Psyllid ID: psy16665

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-
Protein Sequence
MGLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDKNL
Secondary Structure (PSIPRED)
ccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccHHHHHHEEHHHHHEEcccccccc
Coil and Loop (DISEMBL)
MGLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLknsgsdvssiafLPLISVIMFIVMFsipwgdknl
Flexible Loop (DISEMBL)
MGLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDKNL
Low Complexity Region (SEG)
MGLSVVLVDKAGrrlllllSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDKNL
Disordered region (IsUnstruct)
***SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWG****
Disordered Region (DISOPRED)
MGLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDKN*
Disordered Region (DISEMBL)
MGLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDKNL
Disordered Region (DISPRO)
*GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDK**
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDKNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	71	2.2.26 [Sep-21-2011]
Q7PIR5	793	Facilitated trehalose tra	no	N/A	0.901	0.080	0.434	2e-10
B3NSE1	856	Facilitated trehalose tra	N/A	N/A	0.901	0.074	0.449	5e-10
A1Z8N1	857	Facilitated trehalose tra	yes	N/A	0.901	0.074	0.449	6e-10
B4HNS0	857	Facilitated trehalose tra	N/A	N/A	0.901	0.074	0.449	7e-10
B4LPX5	911	Facilitated trehalose tra	N/A	N/A	0.901	0.070	0.420	7e-10
Q17NV8	806	Facilitated trehalose tra	N/A	N/A	0.901	0.079	0.391	1e-09
A5LGM7	504	Facilitated trehalose tra	N/A	N/A	0.887	0.125	0.441	2e-09
B4J913	929	Facilitated trehalose tra	N/A	N/A	0.901	0.068	0.434	2e-09
B4KR05	863	Facilitated trehalose tra	N/A	N/A	0.901	0.074	0.420	2e-09
B4P624	856	Facilitated trehalose tra	N/A	N/A	0.901	0.074	0.434	4e-09

>sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 5/69 (7%)

Query: 3   LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
           ++ VL+D+ GR++LL +S + M + L  LG +F++KN+G DVS I +LPL + ++F+V F
Sbjct: 625 IATVLIDRLGRKILLYISDVAMIITLMTLGTFFYMKNNGDDVSEIGWLPLAAFVVFVVGF 684

Query: 63  S-----IPW 66
           S     IPW
Sbjct: 685 SLGFGPIPW 693

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.
Anopheles gambiae (taxid: 7165)

>sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 5/69 (7%)

Query: 3   LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
           + +VL+D+AGR++LL +S I M L L VLG +F+ K  G DVS++ +LPL   +++I+ F
Sbjct: 688 IGIVLIDRAGRKILLYVSNIAMILTLFVLGGFFYCKAHGPDVSNLGWLPLTCFVIYILGF 747

Query: 63  S-----IPW 66
           S     IPW
Sbjct: 748 SLGFGPIPW 756

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila erecta (taxid: 7220)

>sp|A1Z8N1|TRE11_DROME Facilitated trehalose transporter Tret1-1 OS=Drosophila melanogaster GN=Tret1-1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 5/69 (7%)

Query: 3   LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
           + +VL+D+AGR++LL +S I M L L VLG +F+ K  G DVS + +LPL   +++I+ F
Sbjct: 689 IGIVLIDRAGRKILLYVSDIAMVLTLFVLGGFFYCKTYGPDVSHLGWLPLTCFVIYILGF 748

Query: 63  S-----IPW 66
           S     IPW
Sbjct: 749 SLGFGPIPW 757

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila melanogaster (taxid: 7227)

>sp|B4HNS0|TRE11_DROSE Facilitated trehalose transporter Tret1-1 OS=Drosophila sechellia GN=Tret1-1 PE=3 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 5/69 (7%)

Query: 3   LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
           + +VL+D+AGR++LL +S I M L L VLG +F+ K +G DVS + +LPL   +++I+ F
Sbjct: 689 IGIVLIDRAGRKILLYVSDIAMVLTLFVLGGFFYCKANGPDVSHLGWLPLTCFVIYILGF 748

Query: 63  S-----IPW 66
           S     IPW
Sbjct: 749 SLGFGPIPW 757

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila sechellia (taxid: 7238)

>sp|B4LPX5|TRET1_DROVI Facilitated trehalose transporter Tret1 OS=Drosophila virilis GN=Tret1 PE=3 SV=2

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 49/69 (71%), Gaps = 5/69 (7%)

Query: 3   LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
           ++ +L+D+AGR++LL +S ++M L L VLG +F+ K+SG D S++ +LPL   +++I+ F
Sbjct: 743 IATILIDRAGRKVLLYVSNVMMVLTLFVLGGFFYCKSSGMDTSNVGWLPLSCFVIYILGF 802

Query: 63  S-----IPW 66
           S     IPW
Sbjct: 803 SLGFGPIPW 811

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila virilis (taxid: 7244)

>sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 48/69 (69%), Gaps = 5/69 (7%)

Query: 3   LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
           ++ +L+D+ GR++LL +S + M + L  LG +F++KNSG DVS + +LPL + +++++ F
Sbjct: 638 IATMLIDRLGRKMLLYISDVAMIITLMTLGGFFYVKNSGQDVSQVGWLPLAAFVIYVLGF 697

Query: 63  S-----IPW 66
           S     IPW
Sbjct: 698 SLGFGPIPW 706

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Aedes aegypti (taxid: 7159)

>sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 48/68 (70%), Gaps = 5/68 (7%)

Query: 4   SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFS 63
           + VL+D+ GR++LL +S + M + L  LG +F+ KNSG+DVS+I +LPL S +++++ FS
Sbjct: 337 ATVLIDRLGRKILLYISEVAMVITLLTLGTFFYYKNSGNDVSNIGWLPLASFVIYVIGFS 396

Query: 64  -----IPW 66
                IPW
Sbjct: 397 SGVGPIPW 404

High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Polypedilum vanderplanki (taxid: 319348)

>sp|B4J913|TRET1_DROGR Facilitated trehalose transporter Tret1 OS=Drosophila grimshawi GN=Tret1 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 5/69 (7%)

Query: 3   LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
           + ++L+D+AGR++LL +S I M L L VLG +F+ K +G DVS++  LPL   +++I+ F
Sbjct: 761 IGILLIDRAGRKILLYVSNIAMILTLFVLGGFFYCKANGMDVSNVGLLPLCCFVVYILGF 820

Query: 63  S-----IPW 66
           S     IPW
Sbjct: 821 SLGFGPIPW 829

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila grimshawi (taxid: 7222)

>sp|B4KR05|TRET1_DROMO Facilitated trehalose transporter Tret1 OS=Drosophila mojavensis GN=Tret1 PE=3 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 5/69 (7%)

Query: 3   LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
           ++ VL+D+AGR++LL +S + M L L VLG +F+ K++G D S++ +LPL   +++I+ F
Sbjct: 695 IATVLIDRAGRKILLYVSNVAMILTLFVLGGFFYCKSTGMDTSNVGWLPLSCFVVYILGF 754

Query: 63  S-----IPW 66
           S     IPW
Sbjct: 755 SLGFGPIPW 763

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila mojavensis (taxid: 7230)

>sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 5/69 (7%)

Query: 3   LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
           + ++L+D+AGR++LL  S I M L L VLG +F+ K  G DVS + +LPL   +++I+ F
Sbjct: 688 IGILLIDRAGRKILLYASDIAMVLTLFVLGGFFYCKAHGPDVSHLGWLPLTCFVVYILGF 747

Query: 63  S-----IPW 66
           S     IPW
Sbjct: 748 SVGFGPIPW 756

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila yakuba (taxid: 7245)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
291461567	478	sugar transporter 4 [Nilaparvata lugens]	0.887	0.131	0.602	3e-14
157126364	488	sugar transporter [Aedes aegypti]	0.901	0.131	0.594	3e-12
312385699	529	hypothetical protein AND_00446 [Anophele	0.887	0.119	0.602	6e-12
347969985	480	AGAP003492-PB [Anopheles gambiae str. PE	0.887	0.131	0.588	1e-11
347969989	492	AGAP003492-PA [Anopheles gambiae str. PE	0.887	0.128	0.588	1e-11
195144544	512	GL24034 [Drosophila persimilis] gi|19845	0.845	0.117	0.523	1e-11
390178340	518	GA26484, isoform B [Drosophila pseudoobs	0.845	0.115	0.523	1e-11
170054020	479	sugar transporter [Culex quinquefasciatu	0.901	0.133	0.579	4e-11
357619298	500	hypothetical protein KGM_13187 [Danaus p	0.901	0.128	0.536	4e-11
383858089	472	PREDICTED: facilitated trehalose transpo	0.901	0.135	0.507	1e-10

>gi|291461567|dbj|BAI83418.1| sugar transporter 4 [Nilaparvata lugens]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 5/68 (7%)

Query: 4   SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFS 63
           S VLVDKAGRR+LLL+S  +M LCLG LG+YF L+  G DVS+I  +PL+SV +FIV+FS
Sbjct: 318 SAVLVDKAGRRILLLISSSVMALCLGCLGYYFHLQQKGEDVSNIGMIPLVSVCVFIVVFS 377

Query: 64  -----IPW 66
                IPW
Sbjct: 378 LGFGPIPW 385

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126364|ref|XP_001660877.1| sugar transporter [Aedes aegypti]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 50/69 (72%), Gaps = 5/69 (7%)

Query: 3   LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
           +S VL+DKAGRR+LLL S  IMG CL VLG YF L+N  +DVS I +LPL SV++FI+ F
Sbjct: 336 VSSVLIDKAGRRILLLQSSFIMGSCLVVLGVYFKLQNDKADVSGIGWLPLASVVLFIISF 395

Query: 63  S-----IPW 66
           S     IPW
Sbjct: 396 SLGFGPIPW 404

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385699|gb|EFR30128.1| hypothetical protein AND_00446 [Anopheles darlingi]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 49/68 (72%), Gaps = 5/68 (7%)

Query: 4   SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFS 63
           S VL+DKAGRR+LLL S  IMG CL VLG YF L+N   DVS+I +LPL SV++FI+ FS
Sbjct: 378 SSVLIDKAGRRILLLQSSFIMGSCLVVLGIYFKLQNDKVDVSNIGWLPLASVVLFIISFS 437

Query: 64  -----IPW 66
                IPW
Sbjct: 438 LGFGPIPW 445

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969985|ref|XP_003436493.1| AGAP003492-PB [Anopheles gambiae str. PEST] gi|347969987|ref|XP_003436494.1| AGAP003492-PC [Anopheles gambiae str. PEST] gi|347969991|ref|XP_003436495.1| AGAP003492-PD [Anopheles gambiae str. PEST] gi|333466667|gb|EGK96332.1| AGAP003492-PB [Anopheles gambiae str. PEST] gi|333466668|gb|EGK96333.1| AGAP003492-PC [Anopheles gambiae str. PEST] gi|333466669|gb|EGK96334.1| AGAP003492-PD [Anopheles gambiae str. PEST]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 49/68 (72%), Gaps = 5/68 (7%)

Query: 4   SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFS 63
           S VL+DKAGRR+LLL S  IMG CL VLG YF ++N   DVS+I +LPL SV++FI+ FS
Sbjct: 329 SSVLIDKAGRRILLLQSSFIMGACLIVLGVYFKMQNDKVDVSNIGWLPLASVVLFIISFS 388

Query: 64  -----IPW 66
                IPW
Sbjct: 389 LGFGPIPW 396

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969989|ref|XP_309674.5| AGAP003492-PA [Anopheles gambiae str. PEST] gi|333466666|gb|EAA05397.6| AGAP003492-PA [Anopheles gambiae str. PEST]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 49/68 (72%), Gaps = 5/68 (7%)

Query: 4   SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFS 63
           S VL+DKAGRR+LLL S  IMG CL VLG YF ++N   DVS+I +LPL SV++FI+ FS
Sbjct: 341 SSVLIDKAGRRILLLQSSFIMGACLIVLGVYFKMQNDKVDVSNIGWLPLASVVLFIISFS 400

Query: 64  -----IPW 66
                IPW
Sbjct: 401 LGFGPIPW 408

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195144544|ref|XP_002013256.1| GL24034 [Drosophila persimilis] gi|198452802|ref|XP_002137541.1| GA26484, isoform A [Drosophila pseudoobscura pseudoobscura] gi|194102199|gb|EDW24242.1| GL24034 [Drosophila persimilis] gi|198132083|gb|EDY68099.1| GA26484, isoform A [Drosophila pseudoobscura pseudoobscura]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 49/65 (75%), Gaps = 5/65 (7%)

Query: 7   LVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFS--- 63
           L+D+AGR++LLL S  +M +CL +LG YF +K+SG DVSSI +LPL+ V++F++ FS   
Sbjct: 365 LIDRAGRKILLLFSSTVMSICLAILGAYFDMKDSGKDVSSIGWLPLLCVVLFMITFSVGY 424

Query: 64  --IPW 66
             IPW
Sbjct: 425 GPIPW 429

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390178340|ref|XP_003736628.1| GA26484, isoform B [Drosophila pseudoobscura pseudoobscura] gi|388859411|gb|EIM52701.1| GA26484, isoform B [Drosophila pseudoobscura pseudoobscura]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 49/65 (75%), Gaps = 5/65 (7%)

Query: 7   LVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFS--- 63
           L+D+AGR++LLL S  +M +CL +LG YF +K+SG DVSSI +LPL+ V++F++ FS   
Sbjct: 371 LIDRAGRKILLLFSSTVMSICLAILGAYFDMKDSGKDVSSIGWLPLLCVVLFMITFSVGY 430

Query: 64  --IPW 66
             IPW
Sbjct: 431 GPIPW 435

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170054020|ref|XP_001862938.1| sugar transporter [Culex quinquefasciatus] gi|167874408|gb|EDS37791.1| sugar transporter [Culex quinquefasciatus]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 49/69 (71%), Gaps = 5/69 (7%)

Query: 3   LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
           +S VL+DKAGRR+LLL S  IMG CL VLG YF L+   +DVS I +LPL SV++FI+ F
Sbjct: 328 VSSVLIDKAGRRILLLQSSFIMGSCLVVLGVYFKLQADKADVSGIGWLPLASVVLFIISF 387

Query: 63  S-----IPW 66
           S     IPW
Sbjct: 388 SLGFGPIPW 396

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357619298|gb|EHJ71927.1| hypothetical protein KGM_13187 [Danaus plexippus]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 52/69 (75%), Gaps = 5/69 (7%)

Query: 3   LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
           +S +L++KAGRR+LLL S IIMG+CL VLG YF L+ SG++V +  +LPL+ +++FIV F
Sbjct: 347 ISSLLIEKAGRRILLLQSCIIMGICLIVLGTYFKLQESGANVGTFGWLPLVCLVLFIVSF 406

Query: 63  S-----IPW 66
           S     IPW
Sbjct: 407 SLGFGPIPW 415

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858089|ref|XP_003704535.1| PREDICTED: facilitated trehalose transporter Tret1-like [Megachile rotundata]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 51/69 (73%), Gaps = 5/69 (7%)

Query: 3   LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
           LS ++VD+ GR++LLLLS I M L    LG YF+L+N+G DVS++++LPL++V +FI +F
Sbjct: 322 LSTLVVDRLGRKILLLLSAIFMCLTTCALGIYFYLQNNGEDVSAVSWLPLVAVCIFITVF 381

Query: 63  S-----IPW 66
           S     IPW
Sbjct: 382 SFGFGPIPW 390

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	71
UNIPROTKB|A5LGM7	504	Tret1 "Facilitated trehalose t	0.887	0.125	0.397	2e-07
UNIPROTKB|Q7PIR5	793	Tret1 "Facilitated trehalose t	0.915	0.081	0.384	2.3e-07
UNIPROTKB|B0WC46	517	Tret1 "Facilitated trehalose t	0.915	0.125	0.384	4.4e-07
UNIPROTKB|B4LPX5	911	Tret1 "Facilitated trehalose t	0.915	0.071	0.369	1.2e-06
UNIPROTKB|B4HNS0	857	Tret1-1 "Facilitated trehalose	0.915	0.075	0.4	1.8e-06
UNIPROTKB|Q17NV8	806	Tret1 "Facilitated trehalose t	0.915	0.080	0.338	2.1e-06
UNIPROTKB|B3NSE1	856	Tret1 "Facilitated trehalose t	0.915	0.075	0.4	2.3e-06
FB|FBgn0050035	857	Tret1-1 "Trehalose transporter	0.915	0.075	0.4	2.3e-06
FB|FBgn0036316	539	CG10960 [Drosophila melanogast	0.915	0.120	0.393	2.6e-06
FB|FBgn0037386	502	CG1208 [Drosophila melanogaste	0.887	0.125	0.415	3e-06

UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)]

 Score = 128 (50.1 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 27/68 (39%), Positives = 42/68 (61%)

Query:     4 SVVLVDKAGXXXXXXXSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFS 63
             + VL+D+ G       S + M + L  LG +F+ KNSG+DVS+I +LPL S +++++ FS
Sbjct:   337 ATVLIDRLGRKILLYISEVAMVITLLTLGTFFYYKNSGNDVSNIGWLPLASFVIYVIGFS 396

Query:    64 -----IPW 66
                  IPW
Sbjct:   397 SGVGPIPW 404

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|Q7PIR5 Tret1 "Facilitated trehalose transporter Tret1" [Anopheles gambiae (taxid:7165)]

 Score = 130 (50.8 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 25/65 (38%), Positives = 42/65 (64%)

Query:     3 LSVVLVDKAGXXXXXXXSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
             ++ VL+D+ G       S + M + L  LG +F++KN+G DVS I +LPL + ++F+V F
Sbjct:   625 IATVLIDRLGRKILLYISDVAMIITLMTLGTFFYMKNNGDDVSEIGWLPLAAFVVFVVGF 684

Query:    63 SIPWG 67
             S+ +G
Sbjct:   685 SLGFG 689

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)]

 Score = 125 (49.1 bits), Expect = 4.4e-07, P = 4.4e-07
 Identities = 25/65 (38%), Positives = 42/65 (64%)

Query:     3 LSVVLVDKAGXXXXXXXSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
             ++ +L+D+ G       S I M + L  LG +F++KN+G DVS I +LPL S ++F++ F
Sbjct:   349 IATLLIDRLGRKMLLYISDIAMIITLMTLGGFFYVKNNGGDVSHIGWLPLASFVIFVLGF 408

Query:    63 SIPWG 67
             S+ +G
Sbjct:   409 SLGFG 413

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

UNIPROTKB|B4LPX5 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila virilis (taxid:7244)]

 Score = 124 (48.7 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 24/65 (36%), Positives = 43/65 (66%)

Query:     3 LSVVLVDKAGXXXXXXXSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
             ++ +L+D+AG       S ++M L L VLG +F+ K+SG D S++ +LPL   +++I+ F
Sbjct:   743 IATILIDRAGRKVLLYVSNVMMVLTLFVLGGFFYCKSSGMDTSNVGWLPLSCFVIYILGF 802

Query:    63 SIPWG 67
             S+ +G
Sbjct:   803 SLGFG 807

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4HNS0 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila sechellia (taxid:7238)]

 Score = 122 (48.0 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 26/65 (40%), Positives = 41/65 (63%)

Query:     3 LSVVLVDKAGXXXXXXXSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
             + +VL+D+AG       S I M L L VLG +F+ K +G DVS + +LPL   +++I+ F
Sbjct:   689 IGIVLIDRAGRKILLYVSDIAMVLTLFVLGGFFYCKANGPDVSHLGWLPLTCFVIYILGF 748

Query:    63 SIPWG 67
             S+ +G
Sbjct:   749 SLGFG 753

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)]

 Score = 121 (47.7 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 22/65 (33%), Positives = 42/65 (64%)

Query:     3 LSVVLVDKAGXXXXXXXSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
             ++ +L+D+ G       S + M + L  LG +F++KNSG DVS + +LPL + +++++ F
Sbjct:   638 IATMLIDRLGRKMLLYISDVAMIITLMTLGGFFYVKNSGQDVSQVGWLPLAAFVIYVLGF 697

Query:    63 SIPWG 67
             S+ +G
Sbjct:   698 SLGFG 702

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

UNIPROTKB|B3NSE1 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila erecta (taxid:7220)]

 Score = 121 (47.7 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 26/65 (40%), Positives = 41/65 (63%)

Query:     3 LSVVLVDKAGXXXXXXXSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
             + +VL+D+AG       S I M L L VLG +F+ K  G DVS++ +LPL   +++I+ F
Sbjct:   688 IGIVLIDRAGRKILLYVSNIAMILTLFVLGGFFYCKAHGPDVSNLGWLPLTCFVIYILGF 747

Query:    63 SIPWG 67
             S+ +G
Sbjct:   748 SLGFG 752

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

FB|FBgn0050035 Tret1-1 "Trehalose transporter 1-1" [Drosophila melanogaster (taxid:7227)]

 Score = 121 (47.7 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query:     3 LSVVLVDKAGXXXXXXXSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
             + +VL+D+AG       S I M L L VLG +F+ K  G DVS + +LPL   +++I+ F
Sbjct:   689 IGIVLIDRAGRKILLYVSDIAMVLTLFVLGGFFYCKTYGPDVSHLGWLPLTCFVIYILGF 748

Query:    63 SIPWG 67
             S+ +G
Sbjct:   749 SLGFG 753

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0008643 "carbohydrate transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015771 "trehalose transport" evidence=IDA

GO:0016020 "membrane" evidence=IDA

FB|FBgn0036316 CG10960 [Drosophila melanogaster (taxid:7227)]

 Score = 118 (46.6 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query:     3 LSVVLVDKAGXXXXXXXSVIIMGLCLGVLGFYFFL-KNSGSDVSSIAFLPLISVIMFIVM 61
             +S ++VDK G       S I M +    +G YFFL K   + V S+ +LP+ S+ +FI+M
Sbjct:   376 VSTLVVDKLGRRILLLASGISMAISTTAIGVYFFLQKQDAAQVVSLGWLPVASLCLFIIM 435

Query:    62 FSIPWG 67
             FSI +G
Sbjct:   436 FSIGYG 441

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

FB|FBgn0037386 CG1208 [Drosophila melanogaster (taxid:7227)]

 Score = 117 (46.2 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query:     4 SVVLVDKAGXXXXXXXSVIIMGLCLGVLGFYFFLKNSGSDVS-SIAFLPLISVIMFIVMF 62
             S +L++KAG       S  IM +CL +LG Y  + N  +D+S SI +LPL+ +++FIV F
Sbjct:   353 SSLLIEKAGRKILLIFSSTIMTVCLAMLGAYNTI-NRHTDLSQSIGWLPLLCIVLFIVSF 411

Query:    63 SIPWG 67
             S+ +G
Sbjct:   412 SVGYG 416

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	71
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	2e-05
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	0.001
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	0.004

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 3   LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
           +++ LVD+ GRR LLL+    M +CL VLG       +GS   S   + ++ +++FI  F
Sbjct: 338 VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS-KSSGNVAIVFILLFIAFF 396

Query: 63  SIPWG 67
           ++ WG
Sbjct: 397 AMGWG 401

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 4   SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFS 63
           ++ LVD+ GRR LLLL    M +C  VLG                 + ++ +++FI  F+
Sbjct: 306 AIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAK---SKGAGIVAIVFILLFIAFFA 362

Query: 64  IPWG 67
           + WG
Sbjct: 363 LGWG 366

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 33.5 bits (77), Expect = 0.004
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 3   LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
           L+++ VDK GR+ L ++  + M + +  LG  F+ +  G        + L+S++ ++  F
Sbjct: 325 LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-------VALLSMLFYVAAF 377

Query: 63  SIPWG 67
           ++ WG
Sbjct: 378 AMSWG 382

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	71
KOG0569|consensus	485		99.37
KOG0254|consensus	513		99.2
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.04
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.01
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.79
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.52
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.19
PRK10406	432	alpha-ketoglutarate transporter; Provisional	96.92
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.87
PRK10642	490	proline/glycine betaine transporter; Provisional	96.8
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	96.78
PRK10077	479	xylE D-xylose transporter XylE; Provisional	96.77
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.76
PRK15075	434	citrate-proton symporter; Provisional	96.75
TIGR00900	365	2A0121 H+ Antiporter protein.	96.75
PRK05122	399	major facilitator superfamily transporter; Provisi	96.68
PRK09952	438	shikimate transporter; Provisional	96.66
TIGR00891	405	2A0112 putative sialic acid transporter.	96.63
TIGR00898	505	2A0119 cation transport protein.	96.54
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.54
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	96.52
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	96.51
PRK09705	393	cynX putative cyanate transporter; Provisional	96.51
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	96.5
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	96.48
TIGR00898	505	2A0119 cation transport protein.	96.44
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	96.39
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	96.38
PRK03699	394	putative transporter; Provisional	96.35
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	96.32
PRK12382	392	putative transporter; Provisional	96.32
KOG0253|consensus	528		96.3
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	96.3
TIGR00895	398	2A0115 benzoate transport.	96.27
PRK15462	493	dipeptide/tripeptide permease D; Provisional	96.24
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	96.23
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	96.23
KOG0255|consensus	521		96.22
PRK11195	393	lysophospholipid transporter LplT; Provisional	96.22
PRK15403	413	multidrug efflux system protein MdtM; Provisional	96.2
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	96.18
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	96.17
TIGR00893	399	2A0114 d-galactonate transporter.	96.16
PRK03545	390	putative arabinose transporter; Provisional	96.15
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	96.14
PRK11663	434	regulatory protein UhpC; Provisional	96.12
PRK10642	490	proline/glycine betaine transporter; Provisional	96.09
PRK10473	392	multidrug efflux system protein MdtL; Provisional	96.08
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.05
PRK12307	426	putative sialic acid transporter; Provisional	96.04
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	96.03
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	96.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	95.97
PRK10213	394	nepI ribonucleoside transporter; Reviewed	95.95
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	95.93
PRK10133	438	L-fucose transporter; Provisional	95.93
PRK09952	438	shikimate transporter; Provisional	95.9
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	95.88
PRK14995	495	methyl viologen resistance protein SmvA; Provision	95.85
PRK11646	400	multidrug resistance protein MdtH; Provisional	95.83
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	95.81
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	95.79
PRK10054	395	putative transporter; Provisional	95.76
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	95.72
PRK11652	394	emrD multidrug resistance protein D; Provisional	95.7
PRK03633	381	putative MFS family transporter protein; Provision	95.69
TIGR00901	356	2A0125 AmpG-related permease.	95.66
PRK10091	382	MFS transport protein AraJ; Provisional	95.63
KOG0252|consensus	538		95.62
KOG0254|consensus	513		95.59
PRK03893	496	putative sialic acid transporter; Provisional	95.57
PLN00028	476	nitrate transmembrane transporter; Provisional	95.53
TIGR00897	402	2A0118 polyol permease family. This family of prot	95.47
PRK09584	500	tppB putative tripeptide transporter permease; Rev	95.47
PRK11043	401	putative transporter; Provisional	95.46
KOG0252|consensus	538		95.41
PRK09874	408	drug efflux system protein MdtG; Provisional	95.34
TIGR00892	455	2A0113 monocarboxylate transporter 1.	95.3
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	95.29
PRK10504	471	putative transporter; Provisional	95.21
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	95.16
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	95.11
TIGR00896	355	CynX cyanate transporter. This family of proteins	95.09
PRK10489	417	enterobactin exporter EntS; Provisional	95.08
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	95.07
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	95.01
PRK10473	392	multidrug efflux system protein MdtL; Provisional	95.0
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	94.95
PRK09528	420	lacY galactoside permease; Reviewed	94.76
KOG2615|consensus	451		94.76
PRK14995	495	methyl viologen resistance protein SmvA; Provision	94.68
PTZ00207	591	hypothetical protein; Provisional	94.62
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	94.55
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	94.47
PRK12307	426	putative sialic acid transporter; Provisional	94.4
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	94.38
PRK05122	399	major facilitator superfamily transporter; Provisi	94.37
TIGR00891	405	2A0112 putative sialic acid transporter.	94.32
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	94.21
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	94.17
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	94.16
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	94.04
PRK09874	408	drug efflux system protein MdtG; Provisional	94.0
PRK11010	491	ampG muropeptide transporter; Validated	93.98
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	93.96
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	93.93
PRK09528	420	lacY galactoside permease; Reviewed	93.74
PRK15011	393	sugar efflux transporter B; Provisional	93.73
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	93.7
PRK10406	432	alpha-ketoglutarate transporter; Provisional	93.63
PRK15075	434	citrate-proton symporter; Provisional	93.62
PRK11902	402	ampG muropeptide transporter; Reviewed	93.61
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	93.54
PRK03893	496	putative sialic acid transporter; Provisional	93.54
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	93.41
KOG0569|consensus	485		93.37
COG2211	467	MelB Na+/melibiose symporter and related transport	93.34
PRK10504	471	putative transporter; Provisional	93.29
PF13347	428	MFS_2: MFS/sugar transport protein	93.25
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	93.24
PRK10091	382	MFS transport protein AraJ; Provisional	93.11
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	93.09
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	92.95
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	92.32
PRK03699	394	putative transporter; Provisional	92.27
PRK12382	392	putative transporter; Provisional	92.2
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	92.19
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	92.12
TIGR00900	365	2A0121 H+ Antiporter protein.	92.12
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	92.01
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	91.82
PRK10429	473	melibiose:sodium symporter; Provisional	91.82
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	91.65
TIGR00895	398	2A0115 benzoate transport.	91.34
TIGR00897	402	2A0118 polyol permease family. This family of prot	91.27
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	91.23
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	91.14
PRK11902	402	ampG muropeptide transporter; Reviewed	90.77
TIGR00901	356	2A0125 AmpG-related permease.	90.65
PRK10429	473	melibiose:sodium symporter; Provisional	90.61
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	90.58
PRK09848	448	glucuronide transporter; Provisional	90.52
PRK03633	381	putative MFS family transporter protein; Provision	90.51
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	90.19
PRK10133	438	L-fucose transporter; Provisional	90.07
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	89.87
PRK11043	401	putative transporter; Provisional	89.69
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	89.59
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	89.59
PRK09669	444	putative symporter YagG; Provisional	89.49
KOG3764|consensus	464		89.17
PF12832	77	MFS_1_like: MFS_1 like family	88.5
PLN00028	476	nitrate transmembrane transporter; Provisional	88.48
TIGR00805	633	oat sodium-independent organic anion transporter.	87.81
PRK11010	491	ampG muropeptide transporter; Validated	87.57
KOG2504|consensus	509		86.94
PRK09705	393	cynX putative cyanate transporter; Provisional	86.88
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	86.82
PRK09669	444	putative symporter YagG; Provisional	86.12
PF13347	428	MFS_2: MFS/sugar transport protein	85.96
PRK15011	393	sugar efflux transporter B; Provisional	85.65
TIGR00896	355	CynX cyanate transporter. This family of proteins	85.64
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	85.0
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	84.83
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	84.7
TIGR00893	399	2A0114 d-galactonate transporter.	83.93
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	83.7
KOG0255|consensus	521		83.7
PRK11462	460	putative transporter; Provisional	83.18
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	82.51
PF01788	40	PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynt	82.26
PRK03545	390	putative arabinose transporter; Provisional	81.88
PF06898	385	YqfD: Putative stage IV sporulation protein YqfD;	81.08

>KOG0569|consensus

Probab=99.37  E-value=7.2e-13  Score=84.30  Aligned_cols=68  Identities=34%  Similarity=0.515  Sum_probs=57.8

Q ss_pred             chhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccHHHHHHHHHHHHHhhcccccccC
Q psy16665          2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDKNL   71 (71)
Q Consensus         2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   71 (71)
                      +++.+++||.|||++++.+..++.++.+.+.+.....+..  .....+..+++.++|.++|+.|+||+||
T Consensus       323 ~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~--~~~~~y~~i~~~~~~~~~f~~G~gpi~~  390 (485)
T KOG0569|consen  323 LVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF--GSWLSYLCIAAIFLFIISFAIGPGPIPW  390 (485)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhhhcCCCchhH
Confidence            5678999999999999999999999999998776554432  1356677889999999999999999997

>KOG0254|consensus

Probab=99.20  E-value=7.6e-11  Score=75.07  Aligned_cols=70  Identities=29%  Similarity=0.470  Sum_probs=59.3

Q ss_pred             chhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCC-CcccccHHHHHHHHHHHHHhhcccccccC
Q psy16665          2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGS-DVSSIAFLPLISVIMFIVMFSIPWGDKNL   71 (71)
Q Consensus         2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   71 (71)
                      +++.+++||+|||++++.|...+.++++.++.......++. ......+..++.+++|..+|+.|++|+||
T Consensus       347 ~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w  417 (513)
T KOG0254|consen  347 LVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPW  417 (513)
T ss_pred             HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchh
Confidence            35578999999999999999999999999998766554321 23567899999999999999999999998

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.04  E-value=1.1e-07  Score=59.25  Aligned_cols=68  Identities=34%  Similarity=0.693  Sum_probs=48.2

Q ss_pred             chhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccHHHHHHHHHHHHHhhcccccccC
Q psy16665          2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDKNL   71 (71)
Q Consensus         2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   71 (71)
                      +++.+++||+|||++++.+...+.++...++.......++  +.......+++..++...++.|+++++|
T Consensus       304 ~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~l~~~~~~~g~~~~~~  371 (451)
T PF00083_consen  304 LLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSS--SSWWSILSIVFLALFFAFFSLGWGPLPW  371 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccc--ccccccccceeeeecccccccccccccc
Confidence            3456899999999999999999999888776211121211  1234566666777788888989988775

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.01  E-value=2.6e-05  Score=49.81  Aligned_cols=32  Identities=38%  Similarity=0.613  Sum_probs=26.2

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY   34 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~   34 (71)
                      ++.++.||+|||++++.+..++.++...++..
T Consensus       354 ~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~  385 (502)
T TIGR00887       354 VTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA  385 (502)
T ss_pred             HHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            34579999999999999998888887776643

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.79  E-value=0.00013  Score=45.81  Aligned_cols=60  Identities=27%  Similarity=0.619  Sum_probs=39.7

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccHHHHHHHHHHHHHhhcccccc
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDK   69 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   69 (71)
                      ++.++.||+|||++++.+...+.++.+.++....  .     ..........+.++...++.+++|.
T Consensus       325 ~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~  384 (479)
T PRK10077        325 LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY--T-----QAPGIVALLSMLFYVAAFAMSWGPV  384 (479)
T ss_pred             HHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh--c-----CcccHHHHHHHHHHHHHHhccccch
Confidence            4557889999999999999999888877764321  1     1223344445556666666555554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.52  E-value=0.00077  Score=41.67  Aligned_cols=66  Identities=35%  Similarity=0.613  Sum_probs=40.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccHHHHHHHHHHHHHhhcccccc
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDK   69 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   69 (71)
                      ++.++.||+|||+.+..+.....++.+.+........++. ++...+..+....++..+++.++++.
T Consensus       338 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (481)
T TIGR00879       338 VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS-SKSSGNVAIVFILLFIAFFAMGWGPV  403 (481)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc-ccchhHHHHHHHHHHHHHHHccccCe
Confidence            4567899999999999998888777776663322111110 01224444455555666666666554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.19  E-value=0.0012  Score=44.75  Aligned_cols=31  Identities=29%  Similarity=0.315  Sum_probs=26.1

Q ss_pred             chhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +++.+++||+|||++++.+.++.+++.++++
T Consensus       613 il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~  643 (742)
T TIGR01299       613 IVSALLMDKIGRLRMLAGSMVLSCISCFFLS  643 (742)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999888888877665

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=96.92  E-value=0.0012  Score=41.47  Aligned_cols=30  Identities=33%  Similarity=0.388  Sum_probs=23.6

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.+..+.....++.+..+
T Consensus        82 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~  111 (432)
T PRK10406         82 LFGRIADKHGRKKSMLISVCMMCFGSLVIA  111 (432)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence            456789999999999998888766665543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.87  E-value=0.0086  Score=31.01  Aligned_cols=30  Identities=33%  Similarity=0.556  Sum_probs=23.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.+..+.....++.+...
T Consensus        17 ~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~   46 (141)
T TIGR00880        17 LSGLLTDRFGRKPVLLVGLFIFVLSTAMFA   46 (141)
T ss_pred             hHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence            345678999999999988877777665544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=96.80  E-value=0.0017  Score=41.56  Aligned_cols=31  Identities=29%  Similarity=0.508  Sum_probs=25.1

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      +..++.||+|||+.++.+.....++.+..+.
T Consensus        76 ~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~  106 (490)
T PRK10642         76 FFGMLGDKYGRQKILAITIVIMSISTFCIGL  106 (490)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence            4567899999999999999888877766553

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=96.78  E-value=0.0045  Score=37.26  Aligned_cols=32  Identities=19%  Similarity=0.339  Sum_probs=25.7

Q ss_pred             chhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      .+..++.||+|||+.++.+.....++.+....
T Consensus        48 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   79 (379)
T TIGR00881        48 FVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF   79 (379)
T ss_pred             hhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH
Confidence            34567899999999999999888877766553

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=96.77  E-value=0.0055  Score=38.63  Aligned_cols=30  Identities=17%  Similarity=0.120  Sum_probs=24.4

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.++.+..+..++.+..+
T Consensus        74 ~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~  103 (479)
T PRK10077         74 LGGYCSNRFGRRDSLKIAAVLFFISALGSA  103 (479)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999988777766554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.76  E-value=0.0021  Score=38.95  Aligned_cols=30  Identities=23%  Similarity=0.490  Sum_probs=23.6

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++....+
T Consensus        54 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~   83 (394)
T TIGR00883        54 VFGHFGDRIGRKKTLVITLLMMGIGTLLIG   83 (394)
T ss_pred             HhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            346788999999999999888777665544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK15075 citrate-proton symporter; Provisional

Probab=96.75  E-value=0.0023  Score=40.19  Aligned_cols=30  Identities=23%  Similarity=0.344  Sum_probs=24.4

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++...++
T Consensus        75 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~  104 (434)
T PRK15075         75 VLGAYIDRVGRRKGLIVTLSIMASGTLLIA  104 (434)
T ss_pred             HHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Confidence            346789999999999999988777766655

>TIGR00900 2A0121 H+ Antiporter protein

Probab=96.75  E-value=0.0082  Score=36.04  Aligned_cols=31  Identities=23%  Similarity=0.405  Sum_probs=24.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      +...+.||+|||+.++.+.....++......
T Consensus        53 ~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900        53 IAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             hhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            3457899999999999988877776665543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=96.68  E-value=0.007  Score=37.37  Aligned_cols=29  Identities=10%  Similarity=0.021  Sum_probs=23.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      +...+.||+|||++++.+.....++....
T Consensus        70 ~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~   98 (399)
T PRK05122         70 HAGRYADTLGPKKAVVFGLCGCALSGLLY   98 (399)
T ss_pred             hhHhHHhccCCcchHHHHHHHHHHHHHHH
Confidence            45678999999999999988776664443

>PRK09952 shikimate transporter; Provisional

Probab=96.66  E-value=0.0024  Score=40.28  Aligned_cols=30  Identities=30%  Similarity=0.603  Sum_probs=23.5

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++.+..+
T Consensus        83 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~  112 (438)
T PRK09952         83 VFGHFGDRLGRKRMLMLTVWMMGIATALIG  112 (438)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHh
Confidence            346789999999999998888777655443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=96.63  E-value=0.0086  Score=36.55  Aligned_cols=30  Identities=23%  Similarity=0.337  Sum_probs=23.5

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++.+..+
T Consensus        66 ~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~   95 (405)
T TIGR00891        66 MFGLWGDRYGRRLPMVTSIVLFSAGTLACG   95 (405)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999988877776655544

>TIGR00898 2A0119 cation transport protein

Probab=96.54  E-value=0.0088  Score=38.10  Aligned_cols=30  Identities=27%  Similarity=0.352  Sum_probs=23.8

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++.+..+
T Consensus       146 ~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~  175 (505)
T TIGR00898       146 VFGYLSDRFGRKKVLLLSTLVTAVSGVLTA  175 (505)
T ss_pred             hHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence            456789999999999998887777765544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.54  E-value=0.011  Score=38.84  Aligned_cols=34  Identities=26%  Similarity=0.327  Sum_probs=27.8

Q ss_pred             chhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy16665          2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYF   35 (71)
Q Consensus         2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~   35 (71)
                      .++..+.||+.||++++.+...+.+....+++..
T Consensus        63 l~aG~laDr~drrrili~~~~~~~~~~~~L~~l~   96 (524)
T PF05977_consen   63 LFAGALADRFDRRRILILSQLLRALVALLLAVLA   96 (524)
T ss_pred             HHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            3567799999999999999998887777766554

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=96.52  E-value=0.009  Score=37.82  Aligned_cols=31  Identities=19%  Similarity=0.403  Sum_probs=24.8

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      +..++.||+|||+.++.+.....+..+.++.
T Consensus        82 ~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~  112 (452)
T PRK11273         82 IMGSVSDRSNPRVFLPAGLILAAAVMLFMGF  112 (452)
T ss_pred             hhhhhhhccCCchhHHHHHHHHHHHHHHHHh
Confidence            4567899999999999998877777665553

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=96.51  E-value=0.015  Score=37.69  Aligned_cols=29  Identities=24%  Similarity=0.370  Sum_probs=24.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      ++.++.||+|||+.++++...+.++....
T Consensus       305 lgG~LADRiG~~~vl~~~~i~~~i~~~~~  333 (462)
T PRK15034        305 VGGAISDKFGGVRVTLINFIFMAIFSALL  333 (462)
T ss_pred             hhHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence            56789999999999999998887776543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=96.51  E-value=0.0046  Score=38.47  Aligned_cols=31  Identities=10%  Similarity=0.123  Sum_probs=26.6

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      ....+.||+|||+.+..+.....++.+..+.
T Consensus        63 ~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~   93 (393)
T PRK09705         63 AGSWLHQHVSERRSVAISLLLIAVGALMREL   93 (393)
T ss_pred             hhHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999888887663

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=96.50  E-value=0.0072  Score=38.78  Aligned_cols=30  Identities=30%  Similarity=0.326  Sum_probs=24.1

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.+..+.....++....+
T Consensus        75 ~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~  104 (502)
T TIGR00887        75 FFGWLADKLGRKRVYGMELIIMIIATVASG  104 (502)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999988888777766554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=96.48  E-value=0.0039  Score=37.52  Aligned_cols=30  Identities=30%  Similarity=0.454  Sum_probs=23.4

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....+..+..+
T Consensus        57 ~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~   86 (377)
T TIGR00890        57 VGGLLADKFGPRAVAMLGGILYGLGFTFYA   86 (377)
T ss_pred             hhHHHHHHcCccchhHHhHHHHHHHHHHHH
Confidence            456789999999999988887776665544

>TIGR00898 2A0119 cation transport protein

Probab=96.44  E-value=0.012  Score=37.50  Aligned_cols=30  Identities=30%  Similarity=0.613  Sum_probs=24.3

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ++.++.||+|||+.+..+...+.++.+.+.
T Consensus       374 ~~~~l~dr~grr~~~~~~~~~~~~~~l~~~  403 (505)
T TIGR00898       374 ITLLLIDRLGRRYTMAASLLLAGVALLLLL  403 (505)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999888877766554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=96.39  E-value=0.013  Score=36.31  Aligned_cols=30  Identities=23%  Similarity=0.383  Sum_probs=23.8

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.++.+.....++.....
T Consensus        90 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~  119 (481)
T TIGR00879        90 FAGWLSDRFGRKKSLLIIALLFVIGAILMG  119 (481)
T ss_pred             HhhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999998887777766553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=96.38  E-value=0.01  Score=35.31  Aligned_cols=30  Identities=37%  Similarity=0.535  Sum_probs=24.6

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++.....
T Consensus        53 ~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174          53 LAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             hHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            345688999999999999988888776654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03699 putative transporter; Provisional

Probab=96.35  E-value=0.015  Score=36.13  Aligned_cols=30  Identities=20%  Similarity=0.202  Sum_probs=23.1

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ++..+.||+|||+.++.+.....++.....
T Consensus        61 ~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~   90 (394)
T PRK03699         61 LNAWLMEIIPLKRQLIFGFALMILAVAGLM   90 (394)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999988877766655443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=96.32  E-value=0.0079  Score=36.47  Aligned_cols=30  Identities=30%  Similarity=0.340  Sum_probs=24.2

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++.+.++
T Consensus        56 ~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~   85 (366)
T TIGR00886        56 ILGFLVDKFGPRYTTTLSLLLLAIPCLWAG   85 (366)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            456789999999999998888777766554

>PRK12382 putative transporter; Provisional

Probab=96.32  E-value=0.0066  Score=37.44  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=19.6

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLC   27 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~   27 (71)
                      +...+.||+|||+.++.+.....++
T Consensus        70 ~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         70 YAGRLADQYGAKRSALQGMLACGLA   94 (392)
T ss_pred             hhhHHHHhhcchHHHHHHHHHHHHH
Confidence            4567899999999999887665543

>KOG0253|consensus

Probab=96.30  E-value=0.022  Score=36.90  Aligned_cols=32  Identities=31%  Similarity=0.510  Sum_probs=27.0

Q ss_pred             chhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      ++..+++||+|||+-+-...+.++++++....
T Consensus       399 LIt~~iverlGRKkTMal~l~~f~iflfll~~  430 (528)
T KOG0253|consen  399 LITGVIVERLGRKKTMALSLILFGIFLFLLTT  430 (528)
T ss_pred             hHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence            56788999999999998888888888777653

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=96.30  E-value=0.022  Score=34.76  Aligned_cols=30  Identities=17%  Similarity=0.266  Sum_probs=24.4

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.+..+.....++.....
T Consensus        45 ~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~   74 (377)
T PRK11102         45 FYGPMADSFGRKPVILGGTLVFALAAVACA   74 (377)
T ss_pred             hhchHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999888877766654

>TIGR00895 2A0115 benzoate transport

Probab=96.27  E-value=0.012  Score=35.75  Aligned_cols=30  Identities=23%  Similarity=0.387  Sum_probs=23.8

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.+..+.....++.....
T Consensus        71 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~  100 (398)
T TIGR00895        71 FFGPLADRIGRKRVLLWSILLFSVFTLLCA  100 (398)
T ss_pred             HhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999887777665544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=96.24  E-value=0.0076  Score=39.30  Aligned_cols=31  Identities=35%  Similarity=0.550  Sum_probs=25.2

Q ss_pred             chhhhhhhhh-chhHHHHHHHHHHHHHHHHHH
Q psy16665          2 GLSVVLVDKA-GRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         2 ~~~~~l~d~~-gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +++.++.||+ |||+.++.|...+.+..+.++
T Consensus        63 ligG~LaDRilGrrr~iliG~il~~lg~lll~   94 (493)
T PRK15462         63 ILGGFLADKVLGNRMAVMLGALLMAIGHVVLG   94 (493)
T ss_pred             HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence            3678899999 999999999988887765443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=96.23  E-value=0.022  Score=34.25  Aligned_cols=29  Identities=21%  Similarity=0.271  Sum_probs=22.6

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      +..++.||+|||+.+..+.....++...+
T Consensus       259 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  287 (377)
T TIGR00890       259 FLGALSDKIGRQKTMSIVFGISAVGMAAM  287 (377)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            45678999999999888877777665544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=96.23  E-value=0.022  Score=36.27  Aligned_cols=31  Identities=19%  Similarity=0.326  Sum_probs=25.2

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      +...+.||+|||+++..+.....+....++.
T Consensus        83 ~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~  113 (467)
T PRK09556         83 LVGYYADGKNTKQFLPFLLILSAICMLGFGA  113 (467)
T ss_pred             hhhhHhhccCccchHHHHHHHHHHHHHHHHH
Confidence            4667899999999998888887777766664

>KOG0255|consensus

Probab=96.22  E-value=0.0062  Score=39.14  Aligned_cols=30  Identities=23%  Similarity=0.303  Sum_probs=24.8

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++.+..+
T Consensus       137 i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a  166 (521)
T KOG0255|consen  137 IFGPLSDRFGRKPVLLVSLLLFIIFGILTA  166 (521)
T ss_pred             hheehHhhcccHHHHHHHHHHHHHHHHHHH
Confidence            445688999999999999999888875544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=96.22  E-value=0.0054  Score=38.23  Aligned_cols=28  Identities=11%  Similarity=0.005  Sum_probs=22.2

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGV   30 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~   30 (71)
                      +...+.||+|||++++.+.....+..+.
T Consensus        57 ~~G~laDr~grr~vl~~~~~~~~~~~~~   84 (393)
T PRK11195         57 FVGAFADSFPKGRVMFIANGIKLLGCLL   84 (393)
T ss_pred             hhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence            4567899999999999998877665443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=96.20  E-value=0.0082  Score=37.69  Aligned_cols=30  Identities=30%  Similarity=0.369  Sum_probs=23.1

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++.+...
T Consensus        70 ~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~   99 (413)
T PRK15403         70 LLGPLSDRIGRRPVLITGALIFTLACAATL   99 (413)
T ss_pred             hhhHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence            346789999999999988877766655443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=96.18  E-value=0.021  Score=38.99  Aligned_cols=30  Identities=27%  Similarity=0.284  Sum_probs=23.3

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.++.+.+...++.++.+
T Consensus       221 i~G~LsDR~GRR~~lii~lil~~i~~ll~a  250 (742)
T TIGR01299       221 FWGGLADKLGRKQCLLICLSVNGFFAFFSS  250 (742)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999998877766655544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=96.17  E-value=0.0094  Score=35.66  Aligned_cols=30  Identities=27%  Similarity=0.486  Sum_probs=23.2

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++.+...
T Consensus        51 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen   51 FAGYLSDRFGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence            456789999999999999998888844443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00893 2A0114 d-galactonate transporter

Probab=96.16  E-value=0.015  Score=35.03  Aligned_cols=30  Identities=27%  Similarity=0.390  Sum_probs=23.6

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.+..+.....++....+
T Consensus        48 ~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   77 (399)
T TIGR00893        48 PGGWLLDRFGARKTLAVFIVIWGVFTGLQA   77 (399)
T ss_pred             hHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence            456789999999999988887776665554

>PRK03545 putative arabinose transporter; Provisional

Probab=96.15  E-value=0.0084  Score=37.05  Aligned_cols=29  Identities=17%  Similarity=0.137  Sum_probs=22.5

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      +...+.||+|||+++..+.....++.+..
T Consensus        63 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   91 (390)
T PRK03545         63 PLMLLTSNVERRKLLIGLFVLFIASHVLS   91 (390)
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999887766665544

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=96.14  E-value=0.025  Score=36.36  Aligned_cols=32  Identities=28%  Similarity=0.408  Sum_probs=27.6

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY   34 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~   34 (71)
                      ++.++.||+|.|+.++....++.++....+..
T Consensus       273 ~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~  304 (417)
T COG2223         273 LGGWLSDRIGGRRVTLAVFVGMALAAALLSLF  304 (417)
T ss_pred             ccchhhhhccchhHHHHHHHHHHHHHHHHHcc
Confidence            46789999999999999999999998887744

>PRK11663 regulatory protein UhpC; Provisional

Probab=96.12  E-value=0.02  Score=36.06  Aligned_cols=30  Identities=20%  Similarity=0.410  Sum_probs=24.8

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.+..+.....++.+..+
T Consensus        77 ~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~  106 (434)
T PRK11663         77 VSGIVSDRSNARYFMGIGLIATGIINILFG  106 (434)
T ss_pred             hhhHHHhhcCCchhHHHHHHHHHHHHHHHH
Confidence            456789999999999999888887776554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=96.09  E-value=0.019  Score=36.82  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=17.6

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMG   25 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~   25 (71)
                      ++.++.||+|||+.++.+.....
T Consensus       305 ~~g~l~dr~grr~~~~~~~~~~~  327 (490)
T PRK10642        305 VMGLLSDRFGRRPFVILGSVALF  327 (490)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHH
Confidence            35678999999998887765443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=96.08  E-value=0.01  Score=36.60  Aligned_cols=30  Identities=10%  Similarity=0.217  Sum_probs=23.1

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.++.+.....++.....
T Consensus        57 ~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~   86 (392)
T PRK10473         57 FAGKIADRSGRKPVAIPGAALFIIASLLCS   86 (392)
T ss_pred             hHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            456789999999999988877766655543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.05  E-value=0.011  Score=38.30  Aligned_cols=30  Identities=17%  Similarity=0.324  Sum_probs=25.5

Q ss_pred             hhhhhhhh-hchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDK-AGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~-~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ++.++.|| +|||+.++.|.....++.+.++
T Consensus        69 ~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~   99 (489)
T PRK10207         69 IGGYVGDHLLGTKRTIVLGAIVLAIGYFMTG   99 (489)
T ss_pred             hHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            57789999 9999999999998888766654

>PRK12307 putative sialic acid transporter; Provisional

Probab=96.04  E-value=0.01  Score=36.90  Aligned_cols=30  Identities=33%  Similarity=0.547  Sum_probs=23.7

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++....+
T Consensus        72 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~  101 (426)
T PRK12307         72 LFGLLADKFGRKPLMMWSIVAYSVGTGLSG  101 (426)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999887777665543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=96.03  E-value=0.024  Score=36.50  Aligned_cols=31  Identities=19%  Similarity=0.203  Sum_probs=25.8

Q ss_pred             chhhhhhhh-hchhHHHHHHHHHHHHHHHHHH
Q psy16665          2 GLSVVLVDK-AGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         2 ~~~~~l~d~-~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      .++.++.|| +|||+.++.+.....++...++
T Consensus        66 ~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~   97 (475)
T TIGR00924        66 SVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA   97 (475)
T ss_pred             hhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            356788999 8999999999998888876665

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=96.00  E-value=0.027  Score=34.31  Aligned_cols=30  Identities=40%  Similarity=0.439  Sum_probs=23.5

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++.+...
T Consensus        59 ~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   88 (385)
T TIGR00710        59 LWGPLSDRYGRRPVLLLGLFIFALSSLGLA   88 (385)
T ss_pred             hhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            345689999999999988877777666554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=95.97  E-value=0.035  Score=34.34  Aligned_cols=30  Identities=33%  Similarity=0.499  Sum_probs=22.9

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.+..+.....++.+...
T Consensus        69 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   98 (406)
T PRK11551         69 LGGRLADRIGRKRILIVSVALFGLFSLATA   98 (406)
T ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            456789999999999998877766654443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=95.95  E-value=0.04  Score=34.40  Aligned_cols=29  Identities=14%  Similarity=0.307  Sum_probs=23.5

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ...+.||+|||+.++.+.....++.+..+
T Consensus        75 ~g~l~Dr~grr~~~~~~~~~~~~~~~~~~  103 (394)
T PRK10213         75 ITQTIQATDRRYVVILFAVLLTLSCLLVS  103 (394)
T ss_pred             HHHHhcccCcHHHHHHHHHHHHHHHHHHH
Confidence            35688999999999999998887765544

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=95.93  E-value=0.012  Score=36.58  Aligned_cols=29  Identities=31%  Similarity=0.336  Sum_probs=22.3

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      +...+.||+|||+.++.+.....++....
T Consensus        67 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   95 (406)
T PRK15402         67 LLGPLSDRIGRRPVMLAGVAFFILTCLAI   95 (406)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            34568899999999998887766665544

>PRK10133 L-fucose transporter; Provisional

Probab=95.93  E-value=0.038  Score=35.14  Aligned_cols=29  Identities=10%  Similarity=0.210  Sum_probs=24.3

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      +...+.||+|||+.++.+.....++.+.+
T Consensus        80 ~~g~l~dr~G~r~~l~~g~~~~~~~~~l~  108 (438)
T PRK10133         80 PAGILMKKLSYKAGIITGLFLYALGAALF  108 (438)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999998888887654

>PRK09952 shikimate transporter; Provisional

Probab=95.90  E-value=0.035  Score=35.11  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=18.8

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCL   28 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~   28 (71)
                      ..++.||+|||+.++.+.....++.
T Consensus       306 ~g~l~Dr~grr~~~~~~~~~~~~~~  330 (438)
T PRK09952        306 FAWLADRFGRRRVYITGALIGTLSA  330 (438)
T ss_pred             HHHHHHHhCchHHHHHHHHHHHHHH
Confidence            4678999999998887766554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=95.88  E-value=0.017  Score=36.20  Aligned_cols=30  Identities=13%  Similarity=0.156  Sum_probs=23.6

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.+..+.....+.....+
T Consensus        62 ~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~   91 (412)
T TIGR02332        62 PSNIMLAIIGARRWIAGIMVLWGIASTATM   91 (412)
T ss_pred             hHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999888877776666554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=95.85  E-value=0.048  Score=35.06  Aligned_cols=30  Identities=27%  Similarity=0.268  Sum_probs=25.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++.+..+
T Consensus        60 ~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~   89 (495)
T PRK14995         60 PMGALGDRIGFKRLLMLGGTLFGLASLAAA   89 (495)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            356789999999999999988888776655

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=95.83  E-value=0.05  Score=34.06  Aligned_cols=30  Identities=7%  Similarity=0.317  Sum_probs=24.9

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ++..+.||+|||+.++.+.....+..+.+.
T Consensus        65 ~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~   94 (400)
T PRK11646         65 FGGAIADRFGAKPMIVTGMLMRAAGFATMA   94 (400)
T ss_pred             hhhHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999988888776654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=95.81  E-value=0.037  Score=38.58  Aligned_cols=28  Identities=11%  Similarity=-0.025  Sum_probs=20.7

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGV   30 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~   30 (71)
                      ++..+.||+|||++++.+.....+..+.
T Consensus        66 ~~G~l~Dr~grk~~l~~~~~~~~~~~~~   93 (1146)
T PRK08633         66 PAGFLADKFSKNRVIRIVKLFEVGLTLL   93 (1146)
T ss_pred             hHhhhcccccHHHHHHHHHHHHHHHHHH
Confidence            4567899999999998887655444443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=95.79  E-value=0.013  Score=36.86  Aligned_cols=29  Identities=14%  Similarity=0.235  Sum_probs=23.9

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      ...++.||+|||+.++.+.....++....
T Consensus        57 ~~g~l~~r~G~r~~~~~g~~l~~~g~~l~   85 (410)
T TIGR00885        57 PAAIFMKKLSYKAGILLGLFLYALGAFLF   85 (410)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            45679999999999999998887776553

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10054 putative transporter; Provisional

Probab=95.76  E-value=0.043  Score=34.29  Aligned_cols=30  Identities=17%  Similarity=0.180  Sum_probs=22.8

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++.+.+.
T Consensus        62 ~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~   91 (395)
T PRK10054         62 GFGILADKFDKKRYMLLAITAFASGFIAIP   91 (395)
T ss_pred             HHHHHHhhcCcchhHHHHHHHHHHHHHHHH
Confidence            456789999999999888877766655443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=95.72  E-value=0.019  Score=36.18  Aligned_cols=30  Identities=30%  Similarity=0.352  Sum_probs=23.7

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.++.+.....++.+..+
T Consensus        56 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   85 (485)
T TIGR00711        56 LTGWLAKRFGTRRLFLISTFAFTLGSLLCG   85 (485)
T ss_pred             hHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence            456789999999999999887777665543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=95.70  E-value=0.018  Score=35.55  Aligned_cols=29  Identities=31%  Similarity=0.339  Sum_probs=22.2

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      +...+.||+|||+.++.+.....++.+..
T Consensus        62 ~~G~l~Dr~grr~~~~~~~~~~~~~~~~~   90 (394)
T PRK11652         62 FYGPLSDRVGRRPVILVGMSIFILGTLVA   90 (394)
T ss_pred             hhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            34678999999999988887666665543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=95.69  E-value=0.059  Score=33.28  Aligned_cols=30  Identities=20%  Similarity=0.263  Sum_probs=23.7

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.+..+.....+.....+
T Consensus        60 ~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~   89 (381)
T PRK03633         60 LAGYVIKRIGFNRSYYLASLIFAAGCAGLG   89 (381)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999998887777665544

>TIGR00901 2A0125 AmpG-related permease

Probab=95.66  E-value=0.059  Score=32.80  Aligned_cols=30  Identities=17%  Similarity=0.113  Sum_probs=22.6

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ++.++.||+|||+.+..+.....+....+.
T Consensus       264 ~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~  293 (356)
T TIGR00901       264 IGGIIMQPLNILYALLLFGIVQALTNAGFV  293 (356)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999998888877766655443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=95.63  E-value=0.052  Score=33.56  Aligned_cols=30  Identities=10%  Similarity=0.186  Sum_probs=24.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.+..+.....+..+..+
T Consensus        57 ~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~   86 (382)
T PRK10091         57 IIALFSSRYSLKHILLFLVALCVIGNAMFT   86 (382)
T ss_pred             HHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence            346688999999999999888877766554

>KOG0252|consensus

Probab=95.62  E-value=0.0067  Score=39.73  Aligned_cols=31  Identities=26%  Similarity=0.416  Sum_probs=27.3

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY   34 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~   34 (71)
                      +.+++|++|||+..+-|+..+.+..+.++..
T Consensus       368 tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~  398 (538)
T KOG0252|consen  368 TVYFIDIIGRKYIQLMGFFIMTIFFFVIAGP  398 (538)
T ss_pred             EEEEeehhhhHHHHHhhHHHHHHHHHHHcCC
Confidence            4568999999999999999999999888753

>KOG0254|consensus

Probab=95.59  E-value=0.035  Score=35.93  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=27.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY   34 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~   34 (71)
                      +...+.|++|||+.++.+.+...++.++.+..
T Consensus       108 ~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a  139 (513)
T KOG0254|consen  108 LAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA  139 (513)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            45678999999999999999988888877653

>PRK03893 putative sialic acid transporter; Provisional

Probab=95.57  E-value=0.025  Score=35.89  Aligned_cols=30  Identities=27%  Similarity=0.469  Sum_probs=23.4

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++.+..+
T Consensus        74 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  103 (496)
T PRK03893         74 LLGAMGDRYGRRLAMVISIVLFSVGTLACG  103 (496)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999988877766665544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=95.53  E-value=0.025  Score=36.24  Aligned_cols=30  Identities=10%  Similarity=0.026  Sum_probs=23.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.+..+.....++.+..+
T Consensus        90 ~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~  119 (476)
T PLN00028         90 AMGPVCDLYGPRYGSAFLLMLTAPAVFCMS  119 (476)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            456788999999999888877766655443

>TIGR00897 2A0118 polyol permease family

Probab=95.47  E-value=0.024  Score=35.32  Aligned_cols=28  Identities=11%  Similarity=0.223  Sum_probs=22.3

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGV   30 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~   30 (71)
                      +...+.||+|||+.+..+.....++...
T Consensus        67 ~~g~l~dr~g~k~~l~~~~~~~~~~~~~   94 (402)
T TIGR00897        67 ISGVVAEIIGPLKTMMIGLLLWCVGHAA   94 (402)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            4567899999999999888877766543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=95.47  E-value=0.078  Score=34.41  Aligned_cols=30  Identities=20%  Similarity=0.438  Sum_probs=24.5

Q ss_pred             hhhhhhhh-hchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDK-AGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~-~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ++.++.|| +|||+.++.+.....++...++
T Consensus        76 ~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~  106 (500)
T PRK09584         76 IGGWLGDKVLGTKRVIMLGAIVLAIGYALVA  106 (500)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            46789999 5999999999988887766554

>PRK11043 putative transporter; Provisional

Probab=95.46  E-value=0.021  Score=35.33  Aligned_cols=29  Identities=28%  Similarity=0.282  Sum_probs=21.9

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      +...+.||+|||+.++.+.....++.+..
T Consensus        60 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   88 (401)
T PRK11043         60 LWGPLSDRYGRKPVLLAGLSLFALGSLGM   88 (401)
T ss_pred             hhhhHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence            45678999999999988877666554443

>KOG0252|consensus

Probab=95.41  E-value=0.043  Score=36.13  Aligned_cols=29  Identities=34%  Similarity=0.387  Sum_probs=23.7

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      -.++-||+|||+......+.+.++.++.+
T Consensus       104 FG~lgD~~GRK~vYG~~liImIi~t~~~~  132 (538)
T KOG0252|consen  104 FGWLGDKFGRKKVYGKELIIMIICSALSG  132 (538)
T ss_pred             HHHHHhhhcchhhhhHHHHHHHHHHHHhc
Confidence            35788999999999888888888877444

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=95.34  E-value=0.029  Score=34.53  Aligned_cols=29  Identities=34%  Similarity=0.594  Sum_probs=22.2

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ...+.||+|||+.++.+.....++.....
T Consensus        74 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  102 (408)
T PRK09874         74 WGGLADRKGRKIMLLRSALGMGIVMVLMG  102 (408)
T ss_pred             HHHHhhhhCcHHHHHHHHHHHHHHHHHHH
Confidence            45688999999999988877766655443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=95.30  E-value=0.034  Score=35.43  Aligned_cols=30  Identities=20%  Similarity=0.366  Sum_probs=23.2

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.++.+.....+..+..+
T Consensus        73 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~  102 (455)
T TIGR00892        73 ISSILVNRFGCRPVVIAGGLLASLGMILAS  102 (455)
T ss_pred             HHHHHHHHcCchHHHHhhHHHHHHHHHHHH
Confidence            456799999999999988877766655543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=95.29  E-value=0.085  Score=31.99  Aligned_cols=30  Identities=20%  Similarity=0.203  Sum_probs=21.2

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ++.++.||+|||+.+..+......+...+.
T Consensus       280 ~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~  309 (366)
T TIGR00886       280 LGGAISDRLGGARKLLMSFLGVAMGAFLVV  309 (366)
T ss_pred             ccchHHHhhccchhHHHHHHHHHHHHHHHH
Confidence            455788999999888777766555544443

>PRK10504 putative transporter; Provisional

Probab=95.21  E-value=0.12  Score=32.80  Aligned_cols=29  Identities=21%  Similarity=0.268  Sum_probs=22.1

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      +...+.||+|||+.++.+.....++.+..
T Consensus        64 ~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   92 (471)
T PRK10504         64 ASGWLADRVGVRNIFFTAIVLFTLGSLFC   92 (471)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence            35678999999999998877766665543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=95.16  E-value=0.12  Score=31.28  Aligned_cols=24  Identities=38%  Similarity=0.620  Sum_probs=17.2

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGL   26 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~   26 (71)
                      +..++.||+|||+.++.+.....+
T Consensus       274 ~~g~l~dr~g~~~~~~~~~~~~~~  297 (394)
T TIGR00883       274 LSGALSDRIGRRPVLIIFTVLAAL  297 (394)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHH
Confidence            345789999999987765554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=95.11  E-value=0.0015  Score=40.85  Aligned_cols=33  Identities=24%  Similarity=0.341  Sum_probs=26.2

Q ss_pred             chhhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665          2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY   34 (71)
Q Consensus         2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~   34 (71)
                      +++.++.||+|||+.++.+.....++.++.+..
T Consensus        64 ~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~   96 (451)
T PF00083_consen   64 LIFGFLADRYGRKPALIISALLMIIGSILIAFA   96 (451)
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence            455678899999999999998888777666543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00896 CynX cyanate transporter

Probab=95.09  E-value=0.034  Score=33.86  Aligned_cols=26  Identities=12%  Similarity=0.230  Sum_probs=19.8

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCL   28 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~   28 (71)
                      +...+.||+|||+.++.+.....++.
T Consensus        54 ~~g~l~dr~g~r~~~~~~~~~~~~~~   79 (355)
T TIGR00896        54 LAPWLARRFGEERSVAAGLLLIAAGI   79 (355)
T ss_pred             hHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            45678999999999988876654443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=95.08  E-value=0.018  Score=35.86  Aligned_cols=30  Identities=33%  Similarity=0.359  Sum_probs=22.3

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++...+.
T Consensus        71 ~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~  100 (417)
T PRK10489         71 VGGVLADRYDRKKLILLARGTCGLGFIGLA  100 (417)
T ss_pred             hhHHHhhhcCCceEEEehHHHHHHHHHHHH
Confidence            456789999999998887776666555443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=95.07  E-value=0.054  Score=34.16  Aligned_cols=30  Identities=17%  Similarity=0.192  Sum_probs=23.3

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+++..+.....++...+.
T Consensus       310 ~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~  339 (485)
T TIGR00711       310 IAGRMGDKIDPRKLVTIGLILYAVGFYWRA  339 (485)
T ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHHHHHHh
Confidence            456688999999999888877777666554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=95.01  E-value=0.043  Score=34.61  Aligned_cols=30  Identities=17%  Similarity=0.350  Sum_probs=23.3

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||++++.+.....++.+...
T Consensus        80 ~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~  109 (438)
T TIGR00712        80 IMGSVSDRSNPRVFLPAGLILSAAVMLLMG  109 (438)
T ss_pred             ccchhhhccCCceehHHHHHHHHHHHHHHh
Confidence            456789999999999888877777665543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=95.00  E-value=0.11  Score=32.14  Aligned_cols=30  Identities=17%  Similarity=0.042  Sum_probs=22.5

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.+..+.....+....+.
T Consensus       258 ~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~  287 (392)
T PRK10473        258 STPFALGIFKPRTLMLTSQVLFLAAGITLA  287 (392)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            345688999999999888876666655544

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=94.95  E-value=0.061  Score=33.34  Aligned_cols=23  Identities=26%  Similarity=0.176  Sum_probs=17.3

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMG   25 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~   25 (71)
                      +..++.||+|||+.++.+.....
T Consensus        57 ~~G~l~Dr~grr~~~~~~~~~~~   79 (396)
T TIGR00882        57 LFGLISDKLGLKKHLLWIISGLL   79 (396)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHH
Confidence            45678999999999887655443

>PRK09528 lacY galactoside permease; Reviewed

Probab=94.76  E-value=0.065  Score=33.53  Aligned_cols=23  Identities=26%  Similarity=0.189  Sum_probs=17.2

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMG   25 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~   25 (71)
                      +...+.||+|||+.++.+.....
T Consensus        65 ~~G~l~Dr~g~r~~~~~~~~~~~   87 (420)
T PRK09528         65 LYGLISDKLGLKKHLLWIISGLL   87 (420)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHH
Confidence            45678999999998877655443

>KOG2615|consensus

Probab=94.76  E-value=0.059  Score=34.81  Aligned_cols=29  Identities=28%  Similarity=0.385  Sum_probs=24.4

Q ss_pred             hhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665          6 VLVDKAGRRLLLLLSVIIMGLCLGVLGFY   34 (71)
Q Consensus         6 ~l~d~~gRR~lll~g~~~~~~~~~~~~~~   34 (71)
                      .+.||.|||+.++.+..+.++..++.+..
T Consensus        90 ~~SD~yGRkpvll~c~~~va~s~ll~~~S  118 (451)
T KOG2615|consen   90 CLSDRYGRKPVLLACLIGVALSYLLWALS  118 (451)
T ss_pred             hhhhhhCchHHHHHHHHHHHHHHHHHHHH
Confidence            36799999999999999998887776643

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=94.68  E-value=0.14  Score=33.05  Aligned_cols=30  Identities=23%  Similarity=0.307  Sum_probs=22.5

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.+..+.....++...+.
T Consensus       314 ~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~  343 (495)
T PRK14995        314 IAGILVSRLGLRLVATGGMALSALSFYGLA  343 (495)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence            445688999999998888877766655443

>PTZ00207 hypothetical protein; Provisional

Probab=94.62  E-value=0.067  Score=35.82  Aligned_cols=31  Identities=19%  Similarity=0.273  Sum_probs=26.8

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      ++.++.||+|||++++++.....++.+..+.
T Consensus        80 p~G~L~Dr~G~R~vllig~ll~~iG~ll~al  110 (591)
T PTZ00207         80 PYSFIYDYLGPRPIFVLSMTVFCLGTLLFAL  110 (591)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            4577899999999999999999888877764

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=94.55  E-value=0.16  Score=34.21  Aligned_cols=29  Identities=21%  Similarity=0.190  Sum_probs=24.7

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ...+.|.+|||..++.+.....++.++.+
T Consensus        98 ~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a  126 (599)
T PF06609_consen   98 VGRLSDLFGRRYFFIIGSLLGVVGSIVCA  126 (599)
T ss_pred             hHHHHHHhcchHHHHHHHHHHHhHHHHhh
Confidence            34588999999999999998888887765

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=94.47  E-value=0.07  Score=33.29  Aligned_cols=21  Identities=33%  Similarity=0.346  Sum_probs=15.6

Q ss_pred             hhhhhhhhhchhHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVII   23 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~   23 (71)
                      ...++.||+|||++++.....
T Consensus        45 ~~G~l~Dr~grr~~~~~~~~~   65 (368)
T TIGR00903        45 PSGLLLDRAFKRWFLFGSLAT   65 (368)
T ss_pred             HHHHHHHHccchHHHHHHHHH
Confidence            456799999999987655443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK12307 putative sialic acid transporter; Provisional

Probab=94.40  E-value=0.28  Score=30.57  Aligned_cols=27  Identities=11%  Similarity=0.129  Sum_probs=20.3

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLG   29 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~   29 (71)
                      +..++.||+|||+.+..+.....+..+
T Consensus       285 ~~g~l~dr~~~~~~~~~~~~~~~~~~~  311 (426)
T PRK12307        285 VWGLCADRIGLKKTFSIGLLMSFLFIF  311 (426)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            345688999999998888776655444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=94.38  E-value=0.23  Score=29.49  Aligned_cols=29  Identities=38%  Similarity=0.600  Sum_probs=22.9

Q ss_pred             hhhhhhhhchhH-HHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRL-LLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         4 ~~~l~d~~gRR~-lll~g~~~~~~~~~~~~   32 (71)
                      ...+.||+|||+ .+..+.....++.....
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  260 (352)
T cd06174         231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLA  260 (352)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            455789999999 88888887777766655

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=94.37  E-value=0.27  Score=30.37  Aligned_cols=30  Identities=23%  Similarity=0.221  Sum_probs=22.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.+..+...+.++...+.
T Consensus       268 ~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  297 (399)
T PRK05122        268 LFGNLINRLGGLRVAIVSLLVEILGLLLLW  297 (399)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            345688999999998888776666655443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=94.32  E-value=0.25  Score=30.21  Aligned_cols=22  Identities=27%  Similarity=0.184  Sum_probs=17.3

Q ss_pred             hhhhhhhhhchhHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIM   24 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~   24 (71)
                      +..++.||+|||+.+..+....
T Consensus       293 ~~g~l~dr~g~~~~~~~~~~~~  314 (405)
T TIGR00891       293 VFGFLGDWLGRRKAYVCSLLAG  314 (405)
T ss_pred             HHHHHHHHhCchhhhHHHHHHH
Confidence            4567899999999888776654

>TIGR00899 2A0120 sugar efflux transporter

Probab=94.21  E-value=0.28  Score=29.78  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=18.1

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLC   27 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~   27 (71)
                      ++..+.||+|||+.+..+.....+.
T Consensus       254 ~~g~l~~r~g~~~~~~~~~~~~~~~  278 (375)
T TIGR00899       254 LAGYLIKRFGKRRLMLLAALAGVAF  278 (375)
T ss_pred             hHHHHHHHhcchhHHHHHHHHHHHH
Confidence            3457899999999887776554433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=94.17  E-value=0.09  Score=34.15  Aligned_cols=55  Identities=18%  Similarity=0.307  Sum_probs=44.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccHHHHHHHHHHHHHhhccccc
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGD   68 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   68 (71)
                      +...+.||.+-|..+-.|....+++.+.++..           ..-++..++..+...+.++|+.|
T Consensus        83 ~~G~~sDr~npr~fm~~gLilsai~nil~Gfs-----------~s~~~~~~l~~lng~fQg~Gwpp  137 (448)
T COG2271          83 VMGVLSDRSNPRYFMAFGLILSAIVNILFGFS-----------PSLFLFAVLWVLNGWFQGMGWPP  137 (448)
T ss_pred             HhhhhcccCCCceeehHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHHHhcCCCcH
Confidence            34568899999999999999999999998853           23456666777788888888876

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=94.16  E-value=0.21  Score=31.64  Aligned_cols=29  Identities=10%  Similarity=-0.030  Sum_probs=22.5

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      ++.++.||+|||+.+..+.....+..+..
T Consensus        95 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~  123 (465)
T TIGR00894        95 PVGYLAGKYVFKWSIGIGMFLSSVISIVI  123 (465)
T ss_pred             chHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence            45678999999999988887766665543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=94.04  E-value=0.24  Score=30.92  Aligned_cols=29  Identities=31%  Similarity=0.417  Sum_probs=22.3

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      +..++.||+|||+.+..+.....++.+.+
T Consensus       276 ~~~~l~~r~g~~~~~~~~~~~~~~~~~~~  304 (437)
T TIGR00792       276 LFPRLVKKFGRKILFAGGILLMVLGYLIF  304 (437)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            34568999999999988887776665544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=94.00  E-value=0.28  Score=30.22  Aligned_cols=26  Identities=27%  Similarity=0.233  Sum_probs=19.4

Q ss_pred             hhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665          5 VVLVDKAGRRLLLLLSVIIMGLCLGV   30 (71)
Q Consensus         5 ~~l~d~~gRR~lll~g~~~~~~~~~~   30 (71)
                      .++.||+|||+.+..+.....+..+.
T Consensus       279 g~l~dr~g~~~~~~~~~~~~~~~~~~  304 (408)
T PRK09874        279 GKLGDRIGPEKILITALIFSVLLLIP  304 (408)
T ss_pred             HHHHhccccchhHHHHHHHHHHHHHH
Confidence            46889999999988877765554443

>PRK11010 ampG muropeptide transporter; Validated

Probab=93.98  E-value=0.21  Score=32.33  Aligned_cols=27  Identities=15%  Similarity=0.188  Sum_probs=19.7

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLG   29 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~   29 (71)
                      ++.++.||+|||+.++.+...+.+..+
T Consensus       278 l~G~L~dr~g~~~~l~i~~~l~~l~~l  304 (491)
T PRK11010        278 YGGILMQRLSLFRALMIFGILQGVSNA  304 (491)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            456789999999988776665555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=93.96  E-value=0.38  Score=29.89  Aligned_cols=30  Identities=17%  Similarity=0.081  Sum_probs=22.7

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      ...+.||++||+.+..+.....++...+..
T Consensus       271 ~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~  300 (406)
T PRK15402        271 LARLTSRRPLRSLIRMGLWPMVAGLLLAAL  300 (406)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            356789999999988887777666665554

>TIGR00889 2A0110 nucleoside transporter

Probab=93.93  E-value=0.12  Score=32.68  Aligned_cols=29  Identities=21%  Similarity=0.431  Sum_probs=22.7

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ...+.||+|||++++.+.....++...+.
T Consensus       271 ~g~l~dr~g~r~~l~~~~~~~~v~~~l~~  299 (418)
T TIGR00889       271 IPFFLKRFGIKKVMLLSLVAWALRFGFFA  299 (418)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            44688999999999999887777655443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09528 lacY galactoside permease; Reviewed

Probab=93.74  E-value=0.3  Score=30.56  Aligned_cols=30  Identities=23%  Similarity=0.368  Sum_probs=22.8

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.+..+.....+.....+
T Consensus       281 ~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~  310 (420)
T PRK09528        281 FAPFIINRIGAKNALLLAGTIMAVRIIGSG  310 (420)
T ss_pred             HHHHHHHHhCcchhhHHHHHHHHHHHHHHH
Confidence            456789999999998888777766655543

>PRK15011 sugar efflux transporter B; Provisional

Probab=93.73  E-value=0.31  Score=30.31  Aligned_cols=24  Identities=13%  Similarity=0.296  Sum_probs=17.3

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGL   26 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~   26 (71)
                      +..++.||+|||+.+..+.....+
T Consensus       271 ~~G~l~dr~g~~~~~~~~~~~~~~  294 (393)
T PRK15011        271 IAGYFAKRLGKRFLMRVAAVAGVC  294 (393)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHH
Confidence            456788999999987766554443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=93.70  E-value=0.52  Score=28.70  Aligned_cols=30  Identities=23%  Similarity=0.373  Sum_probs=22.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.+..+.....++...+.
T Consensus       261 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  290 (385)
T TIGR00710       261 LNGRFIKKWGAKSLLRMGLILFAVSAVLLE  290 (385)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            445688999999988888776666655443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=93.63  E-value=0.35  Score=30.54  Aligned_cols=24  Identities=38%  Similarity=0.358  Sum_probs=17.4

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGL   26 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~   26 (71)
                      +..++.||+|||+.++.+.....+
T Consensus       298 ~~G~l~Dr~grr~~~~~~~~~~~~  321 (432)
T PRK10406        298 LIGALSDKIGRRTSMLCFGSLAAL  321 (432)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHH
Confidence            345789999999988776654433

>PRK15075 citrate-proton symporter; Provisional

Probab=93.62  E-value=0.36  Score=30.46  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=16.9

Q ss_pred             hhhhhhhhhchhHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIM   24 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~   24 (71)
                      ++.++.||+|||+.++.+....
T Consensus       293 ~~g~l~Dr~g~r~~~~~~~~~~  314 (434)
T PRK15075        293 IGGALSDRIGRRPVLIAFTVLA  314 (434)
T ss_pred             HHHHHHHHhcchHHHHHHHHHH
Confidence            4567899999999887765544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=93.61  E-value=0.38  Score=29.97  Aligned_cols=29  Identities=14%  Similarity=-0.001  Sum_probs=20.4

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      ++..+.||+|||+.+..+.....+..+.+
T Consensus       265 ~~g~l~~r~g~~~~l~~~~~~~~l~~l~~  293 (402)
T PRK11902        265 AGGTLMVRLGLYRSLMLFGVLQAVSNLGY  293 (402)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            45678899999998877776655554433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=93.54  E-value=0.41  Score=29.64  Aligned_cols=28  Identities=36%  Similarity=0.310  Sum_probs=21.7

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      ...+.||+|+|+.+..+.....+....+
T Consensus       260 ~g~l~~r~~~~~~l~~~~~~~~~~~~~~  287 (382)
T PRK11128        260 SNRLFRRWSARDLLLLSAICGVVRWGLM  287 (382)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence            3468899999999888888777765544

>PRK03893 putative sialic acid transporter; Provisional

Probab=93.54  E-value=0.44  Score=30.33  Aligned_cols=26  Identities=27%  Similarity=0.277  Sum_probs=19.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCL   28 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~   28 (71)
                      ++.++.||+|||+.++.+.....+..
T Consensus       330 ~~g~l~dr~g~~~~~~~~~~~~~~~~  355 (496)
T PRK03893        330 VGGFLGDWLGTRKAYVCSLLISQLLI  355 (496)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            45678999999998887765554443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=93.41  E-value=0.61  Score=28.47  Aligned_cols=24  Identities=17%  Similarity=0.238  Sum_probs=18.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGL   26 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~   26 (71)
                      +..++.||+|||+.+..+...+.+
T Consensus       249 ~~g~l~~r~g~~~~~~~~~~~~~~  272 (377)
T PRK11102        249 INSRFVRRVGALNMLRFGLWIQFI  272 (377)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHH
Confidence            456788999999988877765433

>KOG0569|consensus

Probab=93.37  E-value=0.27  Score=32.34  Aligned_cols=33  Identities=33%  Similarity=0.367  Sum_probs=25.1

Q ss_pred             chhhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665          2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY   34 (71)
Q Consensus         2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~   34 (71)
                      .++..+.||+|||..++.+......+.+.+...
T Consensus        78 ~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s  110 (485)
T KOG0569|consen   78 FSSGLLADRFGRKNALLLSNLLAVLAALLMGLS  110 (485)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            345678899999998888888777776665543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=93.34  E-value=0.56  Score=30.80  Aligned_cols=57  Identities=21%  Similarity=0.256  Sum_probs=33.5

Q ss_pred             hhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccHHHHHHHHHHHHHhhcccccccC
Q psy16665          5 VVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDKNL   71 (71)
Q Consensus         5 ~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   71 (71)
                      ..+.+|+|+|+++..+.....+..+.+-..    +     ....++.++..++..+..+. .++++|
T Consensus       293 p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~----~-----~~~~~l~~~~~~i~~~g~~~-~~~l~w  349 (467)
T COG2211         293 PRLVKKFGKKKLFLIGLLLLAVGYLLLYFT----P-----AGSVVLIVVALIIAGVGTGI-ANPLPW  349 (467)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHHhh----c-----CcchHHHHHHHHHHHHHhhc-cccccH
Confidence            458899999999999977666665544322    1     12234444444555555543 244444

>PRK10504 putative transporter; Provisional

Probab=93.29  E-value=0.35  Score=30.68  Aligned_cols=29  Identities=21%  Similarity=0.269  Sum_probs=22.4

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ...+.||+|||+++..+.....+....+.
T Consensus       317 ~~~l~~r~g~~~~~~~~~~~~~~~~~~~~  345 (471)
T PRK10504        317 VVQVVNRFGYRRVLVATTLGLALVSLLFM  345 (471)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence            45688999999999888877766655544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=93.25  E-value=0.2  Score=31.52  Aligned_cols=31  Identities=16%  Similarity=0.296  Sum_probs=25.5

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY   34 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~   34 (71)
                      ..++.||+|||+.+..+.....++.+.+...
T Consensus       280 ~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~  310 (428)
T PF13347_consen  280 WGRLSKRFGKKKVYIIGLLLAALGFLLLFFL  310 (428)
T ss_pred             HHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence            3568899999999999999888887766543

>TIGR00899 2A0120 sugar efflux transporter

Probab=93.24  E-value=0.17  Score=30.72  Aligned_cols=16  Identities=31%  Similarity=0.262  Sum_probs=11.8

Q ss_pred             hhhhhhhhchhHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLL   19 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~   19 (71)
                      ...+.||+|||+.++.
T Consensus        53 ~g~l~Dr~g~r~~~~~   68 (375)
T TIGR00899        53 LATRSDYQGDRKGLIL   68 (375)
T ss_pred             HHHHHhccCCchHHHH
Confidence            3467899998886554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=93.11  E-value=0.24  Score=30.66  Aligned_cols=29  Identities=24%  Similarity=0.166  Sum_probs=21.4

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      +..++.||+|||+++..+...+.++.+.+
T Consensus       254 ~~g~l~~r~~~~~~~~~~~~~~~i~~~~~  282 (382)
T PRK10091        254 LSGRLSGRYSPLRIAAVTDFIIVLALLML  282 (382)
T ss_pred             HHheeccccCchhHHHHHHHHHHHHHHHH
Confidence            44567899999999888877666665443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=93.09  E-value=0.58  Score=28.95  Aligned_cols=28  Identities=25%  Similarity=0.197  Sum_probs=20.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGV   30 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~   30 (71)
                      +..++.||+|||+.+..+.....++...
T Consensus       274 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~  301 (406)
T PRK11551        274 LIGALMDRLRPRRVVLLIYAGILASLAA  301 (406)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4557899999999888766655555443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=92.95  E-value=0.37  Score=30.47  Aligned_cols=30  Identities=13%  Similarity=-0.093  Sum_probs=23.1

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ++.++.||+++|+++......+.+..+...
T Consensus       288 ~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~  317 (410)
T TIGR00885       288 IGTWLISYLAAHKVLMAYAIIGMALCLGSI  317 (410)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            567889999999988887777776655544

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=92.32  E-value=0.16  Score=33.25  Aligned_cols=29  Identities=21%  Similarity=0.393  Sum_probs=19.7

Q ss_pred             hhhhhh----hhchhHHHHHH-HHHHHHHHHHHH
Q psy16665          4 SVVLVD----KAGRRLLLLLS-VIIMGLCLGVLG   32 (71)
Q Consensus         4 ~~~l~d----~~gRR~lll~g-~~~~~~~~~~~~   32 (71)
                      ..++.|    |+|||+.++.+ .....+++..+.
T Consensus        59 ~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~   92 (477)
T TIGR01301        59 VGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIG   92 (477)
T ss_pred             eeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            346789    59999987764 555556555554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK03699 putative transporter; Provisional

Probab=92.27  E-value=0.87  Score=28.32  Aligned_cols=26  Identities=8%  Similarity=-0.021  Sum_probs=19.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCL   28 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~   28 (71)
                      ++.++.||++||+.+........+..
T Consensus       260 ~~g~l~dr~~~~~~l~~~~~~~~~~~  285 (394)
T PRK03699        260 IFSFIVRFFDLQRILTVLAGLALVLM  285 (394)
T ss_pred             HHHHHHHHhchhhHHHHHHHHHHHHH
Confidence            45678899999998887666555443

>PRK12382 putative transporter; Provisional

Probab=92.20  E-value=0.44  Score=29.44  Aligned_cols=28  Identities=18%  Similarity=0.194  Sum_probs=21.3

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      ...+.||+|||+.+..+.....+....+
T Consensus       269 ~g~l~~r~g~~~~~~~~~~~~~~~~~~~  296 (392)
T PRK12382        269 FGWMPDRFGGVKVAIVSLLVETVGLLLL  296 (392)
T ss_pred             HHHHHHhcCCCeehHHHHHHHHHHHHHH
Confidence            4567899999999888877776665544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=92.19  E-value=0.24  Score=32.74  Aligned_cols=33  Identities=27%  Similarity=0.334  Sum_probs=28.9

Q ss_pred             chhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHH
Q psy16665          2 GLSVVLVDK-AGRRLLLLLSVIIMGLCLGVLGFY   34 (71)
Q Consensus         2 ~~~~~l~d~-~gRR~lll~g~~~~~~~~~~~~~~   34 (71)
                      ++|.|+.|| +|+|+.++.|.+.+.++.++++..
T Consensus        79 i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~  112 (498)
T COG3104          79 IIGGWLADRVLGTRRTIVLGAILMAIGHLVLAIS  112 (498)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc
Confidence            468899998 799999999999999999988754

>TIGR01272 gluP glucose/galactose transporter

Probab=92.12  E-value=0.65  Score=28.36  Aligned_cols=26  Identities=8%  Similarity=0.098  Sum_probs=20.2

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCL   28 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~   28 (71)
                      ++..+.||+|+|+++..+...+.+..
T Consensus       197 ~~~~l~~r~g~~~~l~~~~~l~~~~~  222 (310)
T TIGR01272       197 IGSAVMPMISQGRYLAFNAFLAVLLS  222 (310)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            46678999999998887776666554

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=92.12  E-value=0.98  Score=27.09  Aligned_cols=29  Identities=24%  Similarity=0.304  Sum_probs=21.1

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ..++.||.+||+++..+.....++...+.
T Consensus       267 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  295 (365)
T TIGR00900       267 LGLLGRYFKRMALMTGAIFVIGLAILVVG  295 (365)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence            45678999999998887766666655443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=92.01  E-value=0.89  Score=28.19  Aligned_cols=29  Identities=31%  Similarity=0.311  Sum_probs=23.5

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ...+.||+|+|+++..+.....+....++
T Consensus       260 ~~~l~~r~g~~~~l~~~~~~~~~~~~~~~  288 (382)
T TIGR00902       260 SNKLFQNCSARDLLLISAIACVGRWAIIG  288 (382)
T ss_pred             hHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999888887766654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=91.82  E-value=0.83  Score=28.36  Aligned_cols=27  Identities=19%  Similarity=0.333  Sum_probs=20.9

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGV   30 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~   30 (71)
                      ...+.||+|||+.++.+.....+....
T Consensus       274 ~g~l~~r~g~~~~l~~~~~l~~l~~~~  300 (396)
T TIGR00882       274 APLIINRIGAKNALLIAGTIMSVRIIG  300 (396)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            346899999999998888766665544

>PRK10429 melibiose:sodium symporter; Provisional

Probab=91.82  E-value=1.2  Score=28.62  Aligned_cols=28  Identities=36%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      ...+.||+|||+.++.+.....++.+.+
T Consensus       286 ~~~l~~r~gkk~~~~~~~~~~~~~~~~~  313 (473)
T PRK10429        286 FPRLVKSLSRRILWAGASIFPVLSCGVL  313 (473)
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            3468899999999988877655554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=91.65  E-value=0.9  Score=32.18  Aligned_cols=17  Identities=29%  Similarity=0.270  Sum_probs=13.4

Q ss_pred             hhhhhhhhhchhHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLL   19 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~   19 (71)
                      ++..+.||+|||+++..
T Consensus        71 ~~G~laDr~~rk~~~~~   87 (1140)
T PRK06814         71 LAGQLADKYDKAKLAKI   87 (1140)
T ss_pred             hHHhhhhhccHHHHHHH
Confidence            45678999999997644

>TIGR00895 2A0115 benzoate transport

Probab=91.34  E-value=0.89  Score=27.62  Aligned_cols=18  Identities=33%  Similarity=0.372  Sum_probs=12.8

Q ss_pred             hhhhhhhhhchhHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLS   20 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g   20 (71)
                      +..++.||+|||+..+..
T Consensus       304 ~~~~l~~~~~~~~~~~~~  321 (398)
T TIGR00895       304 IFGWLADRLGPRVTALLL  321 (398)
T ss_pred             HHHHHHhhcchHHHHHHH
Confidence            456789999999554443

>TIGR00897 2A0118 polyol permease family

Probab=91.27  E-value=1.3  Score=27.72  Aligned_cols=16  Identities=19%  Similarity=0.077  Sum_probs=12.2

Q ss_pred             hhhhhhhhhchhHHHH
Q psy16665          3 LSVVLVDKAGRRLLLL   18 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll   18 (71)
                      ...++.||+|||+.+.
T Consensus       276 ~~g~l~dr~~~~~~~~  291 (402)
T TIGR00897       276 IFGIVGDKLGWMNTVR  291 (402)
T ss_pred             HHHHHHHhhcchhHHH
Confidence            3467899999988663

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=91.23  E-value=0.41  Score=31.27  Aligned_cols=30  Identities=23%  Similarity=0.141  Sum_probs=23.7

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ....+.||+|.|+.+..+.....+.....+
T Consensus        89 p~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~  118 (462)
T PRK15034         89 PYSFMVPIFGGRRWTVFSTAILIIPCVWLG  118 (462)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            346789999999999888888777666555

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=91.14  E-value=1.2  Score=28.46  Aligned_cols=23  Identities=26%  Similarity=0.121  Sum_probs=16.4

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMG   25 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~   25 (71)
                      ++.++.||+|||+.++.......
T Consensus       313 ~~G~lsDr~g~r~~~~~~~~~~~  335 (467)
T PRK09556        313 LWGWLSDLANGRRALVACIALAL  335 (467)
T ss_pred             HHHHHHHHHCCCchHHHHHHHHH
Confidence            45678999999987766544333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=90.77  E-value=1.1  Score=27.93  Aligned_cols=29  Identities=28%  Similarity=0.442  Sum_probs=21.4

Q ss_pred             hhhhhhhh-----chhH-HHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKA-----GRRL-LLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         4 ~~~l~d~~-----gRR~-lll~g~~~~~~~~~~~~   32 (71)
                      -..++||+     |||| .++.+..++.+++..+.
T Consensus        52 ~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~   86 (402)
T PRK11902         52 WAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA   86 (402)
T ss_pred             HHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH
Confidence            35688999     7775 68887888877777654

>TIGR00901 2A0125 AmpG-related permease

Probab=90.65  E-value=0.44  Score=29.00  Aligned_cols=29  Identities=38%  Similarity=0.450  Sum_probs=18.7

Q ss_pred             hhhhhhhhh-----chhHH-HHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKA-----GRRLL-LLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~-----gRR~l-ll~g~~~~~~~~~~~   31 (71)
                      +...++||+     ||||. ++.+.....++...+
T Consensus        40 ~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l   74 (356)
T TIGR00901        40 LWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL   74 (356)
T ss_pred             HHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            345688997     89886 455566555554444

>PRK10429 melibiose:sodium symporter; Provisional

Probab=90.61  E-value=0.49  Score=30.35  Aligned_cols=27  Identities=19%  Similarity=0.337  Sum_probs=18.4

Q ss_pred             hhhhh----hhch-hHHHHHHHHHHHHHHHHH
Q psy16665          5 VVLVD----KAGR-RLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         5 ~~l~d----~~gR-R~lll~g~~~~~~~~~~~   31 (71)
                      .++.|    |+|| |+.++.+.+.+.++...+
T Consensus        63 G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ll   94 (473)
T PRK10429         63 GWIVNNTRSRWGKFKPWILIGTLANSVVLFLL   94 (473)
T ss_pred             eeehhcCCCCCCCcchhHhhhhHHHHHHHHHH
Confidence            46789    5598 666777877777765444

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=90.58  E-value=1.5  Score=27.19  Aligned_cols=22  Identities=27%  Similarity=0.232  Sum_probs=17.4

Q ss_pred             hhhhhhhhhchhHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIM   24 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~   24 (71)
                      ++.++.||+|||+.+..+....
T Consensus       263 ~~g~l~~r~g~~~~l~~~~~~~  284 (390)
T TIGR02718       263 GGAWLVRRAGLWRTFILGVGLA  284 (390)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHH
Confidence            4567899999999988776655

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09848 glucuronide transporter; Provisional

Probab=90.52  E-value=1.3  Score=28.05  Aligned_cols=28  Identities=11%  Similarity=0.138  Sum_probs=21.5

Q ss_pred             hhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          5 VVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         5 ~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ..+.||+|+|+.+..+.....++.+.+.
T Consensus       285 ~~l~~r~g~~~~~~~g~~~~~i~~~~~~  312 (448)
T PRK09848        285 PGMVARIGKKNTFLIGALLGTCGYLLFF  312 (448)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999998877766655443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=90.51  E-value=0.46  Score=29.39  Aligned_cols=25  Identities=32%  Similarity=0.336  Sum_probs=18.2

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLC   27 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~   27 (71)
                      ...++.||+|||+.+..+.....++
T Consensus       254 ~~g~l~dr~~~~~~l~~~~~~~~~~  278 (381)
T PRK03633        254 PIGRLADRFGRLLVLRVQVFVVILG  278 (381)
T ss_pred             hhHHHHHHcCcHHHHHHHHHHHHHH
Confidence            3467899999999887666555443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=90.19  E-value=0.66  Score=28.96  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=18.0

Q ss_pred             hhhhhhh----hchhH-HHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDK----AGRRL-LLLLSVIIMGLCLGVL   31 (71)
Q Consensus         4 ~~~l~d~----~gRR~-lll~g~~~~~~~~~~~   31 (71)
                      ..++.||    +|||| .++.+.....++...+
T Consensus        55 ~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~   87 (437)
T TIGR00792        55 MGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL   87 (437)
T ss_pred             heEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence            3567887    67754 5667777666665544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10133 L-fucose transporter; Provisional

Probab=90.07  E-value=0.66  Score=29.61  Aligned_cols=26  Identities=12%  Similarity=0.036  Sum_probs=19.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCL   28 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~   28 (71)
                      .+.++.||+|||+.+..+.....+.+
T Consensus       314 ~~g~l~~r~g~~~~l~~~~~~~~~~~  339 (438)
T PRK10133        314 TGTWLISRFAPHKVLAAYALIAMALC  339 (438)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            45678999999998877765554433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=89.87  E-value=0.58  Score=29.73  Aligned_cols=24  Identities=33%  Similarity=0.404  Sum_probs=17.2

Q ss_pred             hhhhhhhchhHHHHHHHHHHHHHH
Q psy16665          5 VVLVDKAGRRLLLLLSVIIMGLCL   28 (71)
Q Consensus         5 ~~l~d~~gRR~lll~g~~~~~~~~   28 (71)
                      ..+.||+|||+.-+...+...++.
T Consensus        90 G~laD~~Grk~~cl~~cily~~sc  113 (354)
T PF05631_consen   90 GSLADRYGRKKACLLFCILYSLSC  113 (354)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHH
Confidence            457899999997766666554443

>PRK11043 putative transporter; Provisional

Probab=89.69  E-value=3  Score=25.89  Aligned_cols=27  Identities=15%  Similarity=0.196  Sum_probs=18.1

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGV   30 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~   30 (71)
                      +..+.||+|||+.+..+.....++...
T Consensus       258 ~~~l~~r~~~~~~~~~~~~~~~~~~~~  284 (401)
T PRK11043        258 CRAALQKWGGEQLLPWLLVLFAVSVIA  284 (401)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            346779999999776666555554443

>TIGR00889 2A0110 nucleoside transporter

Probab=89.59  E-value=2.7  Score=26.66  Aligned_cols=28  Identities=18%  Similarity=0.049  Sum_probs=17.9

Q ss_pred             hhhhhhhhhch-hHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGR-RLLLLLSVIIMGLCLGV   30 (71)
Q Consensus         3 ~~~~l~d~~gR-R~lll~g~~~~~~~~~~   30 (71)
                      +...+.||+|| |+.+..+.....+....
T Consensus        57 ~~g~l~dr~g~~r~~~~~~~~~~~~~~~~   85 (418)
T TIGR00889        57 LVGIIADKWLSAQKVYAVCHFAGALLLFF   85 (418)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            34568999965 66777666655444433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=89.59  E-value=0.59  Score=30.05  Aligned_cols=29  Identities=21%  Similarity=0.197  Sum_probs=23.5

Q ss_pred             hhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          5 VVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         5 ~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      ..+.||+.||++++.......++.++.+.
T Consensus        69 ~~lt~r~~Rr~lLl~~l~lFi~~n~l~al   97 (394)
T COG2814          69 ALLTGRLERRRLLLGLLALFIVSNLLSAL   97 (394)
T ss_pred             HHHHcccchHHHHHHHHHHHHHHHHHHHH
Confidence            45779999999999988888887776553

>PRK09669 putative symporter YagG; Provisional

Probab=89.49  E-value=2.4  Score=26.87  Aligned_cols=24  Identities=17%  Similarity=0.144  Sum_probs=17.8

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLC   27 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~   27 (71)
                      ..++.||+|||+.+..+.....+.
T Consensus       284 ~~~l~~r~gk~~~~~~~~~~~~~~  307 (444)
T PRK09669        284 SERLLGKFDRVRAFKWTIVAFVIL  307 (444)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHH
Confidence            346899999999988776655443

>KOG3764|consensus

Probab=89.17  E-value=0.62  Score=30.47  Aligned_cols=31  Identities=19%  Similarity=0.300  Sum_probs=26.1

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY   34 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~   34 (71)
                      ...++||+|+|.+++.|...+..+.++++..
T Consensus       126 ~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg  156 (464)
T KOG3764|consen  126 FGNLIDRIGYKIPMVAGLFVMFLSTILFAFG  156 (464)
T ss_pred             chhhHHHhccccHHHHHHHHHHHHHHHHHHc
Confidence            3567899999999999999999888877643

>PF12832 MFS_1_like: MFS_1 like family

Probab=88.50  E-value=0.64  Score=22.91  Aligned_cols=21  Identities=38%  Similarity=0.559  Sum_probs=15.5

Q ss_pred             hhhhhhhhchhHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIM   24 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~   24 (71)
                      -..+.||.+||+..+.....+
T Consensus        55 ~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   55 WGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHCccHHHHHHHHHH
Confidence            356889999999877665443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=88.48  E-value=2.1  Score=27.58  Aligned_cols=12  Identities=42%  Similarity=0.365  Sum_probs=9.7

Q ss_pred             hhhhhhhhhchh
Q psy16665          3 LSVVLVDKAGRR   14 (71)
Q Consensus         3 ~~~~l~d~~gRR   14 (71)
                      ++.++.||++||
T Consensus       307 ~~G~lsDr~~~r  318 (476)
T PLN00028        307 AGGYLSDVAARR  318 (476)
T ss_pred             hhHHHHHHHHHh
Confidence            456899999976

>TIGR00805 oat sodium-independent organic anion transporter

Probab=87.81  E-value=0.16  Score=34.09  Aligned_cols=32  Identities=22%  Similarity=0.232  Sum_probs=27.5

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY   34 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~   34 (71)
                      +..++.||.|||+.+..+.++++++.++.+.-
T Consensus        87 ~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp  118 (633)
T TIGR00805        87 FVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP  118 (633)
T ss_pred             HHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence            45678899999999999999999998887754

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11010 ampG muropeptide transporter; Validated

Probab=87.57  E-value=2.8  Score=27.28  Aligned_cols=29  Identities=28%  Similarity=0.461  Sum_probs=20.4

Q ss_pred             hhhhhhhh-----chhHH-HHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKA-----GRRLL-LLLSVIIMGLCLGVLG   32 (71)
Q Consensus         4 ~~~l~d~~-----gRR~l-ll~g~~~~~~~~~~~~   32 (71)
                      -..+.||+     |||+. ++.+.....++...++
T Consensus        65 ~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a   99 (491)
T PRK11010         65 WSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMG   99 (491)
T ss_pred             HHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence            34688999     99885 6677776666665554

>KOG2504|consensus

Probab=86.94  E-value=2.4  Score=28.08  Aligned_cols=31  Identities=23%  Similarity=0.369  Sum_probs=25.8

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      +...+.||+|.|+..+.|...+.++++.-+.
T Consensus       100 l~s~l~~rfg~R~v~i~G~~v~~~g~~lssF  130 (509)
T KOG2504|consen  100 LVSALCNRFGCRTVMIAGGLVAALGLLLSSF  130 (509)
T ss_pred             HHHHHHhhcCchHHHHHHHHHHHHHHHHHHH
Confidence            3456889999999999999999998776653

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=86.88  E-value=1.2  Score=27.82  Aligned_cols=28  Identities=21%  Similarity=0.311  Sum_probs=20.5

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGV   30 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~   30 (71)
                      +..++.||.|||+....+.....+....
T Consensus       259 ~~g~l~~r~~~~~~~~~~~~l~~~~~~~  286 (393)
T PRK09705        259 LMPAMARHQDRRKLLMLALVLQLVGFCG  286 (393)
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence            3456889999999888877666555443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=86.82  E-value=3.3  Score=27.04  Aligned_cols=31  Identities=13%  Similarity=0.217  Sum_probs=26.4

Q ss_pred             chhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...++++|+|+|+=++.|..++.+...++.
T Consensus        66 lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~   96 (422)
T COG0738          66 LPAGLLIKKLGYKAGIVLGLLLYAVGAALFW   96 (422)
T ss_pred             ccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            4567899999999999999999988877663

>PRK09669 putative symporter YagG; Provisional

Probab=86.12  E-value=1.4  Score=27.92  Aligned_cols=25  Identities=32%  Similarity=0.315  Sum_probs=16.0

Q ss_pred             hhhhhh----hchh-HHHHHHHHHHHHHHH
Q psy16665          5 VVLVDK----AGRR-LLLLLSVIIMGLCLG   29 (71)
Q Consensus         5 ~~l~d~----~gRR-~lll~g~~~~~~~~~   29 (71)
                      .++.||    +||| +.++.+.+...++..
T Consensus        66 G~lsD~~~~r~Grrrp~il~~~~~~~i~~~   95 (444)
T PRK09669         66 GALVDRTRTRHGQFRPYLLWFAIPFGVVCL   95 (444)
T ss_pred             eEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence            456787    7774 556667676666654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=85.96  E-value=0.45  Score=30.00  Aligned_cols=28  Identities=32%  Similarity=0.425  Sum_probs=19.0

Q ss_pred             hhhhh----hhchhHH-HHHHHHHHHHHHHHHH
Q psy16665          5 VVLVD----KAGRRLL-LLLSVIIMGLCLGVLG   32 (71)
Q Consensus         5 ~~l~d----~~gRR~l-ll~g~~~~~~~~~~~~   32 (71)
                      ..+.|    |+|||+. ++.|.+...++...+-
T Consensus        58 G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf   90 (428)
T PF13347_consen   58 GYLSDRTRTRWGRRRPWILIGAILLALSFFLLF   90 (428)
T ss_pred             EEEEeeecccccccceEeehhhHHHHHHHHHhh
Confidence            35678    8997764 5567777777766553

>PRK15011 sugar efflux transporter B; Provisional

Probab=85.65  E-value=1.5  Score=27.29  Aligned_cols=12  Identities=42%  Similarity=0.493  Sum_probs=9.3

Q ss_pred             hhhhhchhHHHH
Q psy16665          7 LVDKAGRRLLLL   18 (71)
Q Consensus         7 l~d~~gRR~lll   18 (71)
                      ..||.|||+.++
T Consensus        74 ~~dr~g~r~~~~   85 (393)
T PRK15011         74 RSDKRGDRKSLI   85 (393)
T ss_pred             HHhcccchhHHH
Confidence            389999998644

>TIGR00896 CynX cyanate transporter

Probab=85.64  E-value=1.6  Score=26.56  Aligned_cols=27  Identities=15%  Similarity=0.181  Sum_probs=17.4

Q ss_pred             hhhhhhhhh-chhHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKA-GRRLLLLLSVIIMGLCLG   29 (71)
Q Consensus         3 ~~~~l~d~~-gRR~lll~g~~~~~~~~~   29 (71)
                      +..++.||+ +||+.+..+...+.++..
T Consensus       251 ~~g~l~dr~~~~~~~~~~~~~~~~~~~~  278 (355)
T TIGR00896       251 LIPALARRVKDQRGIVAVLAVLQLVGLC  278 (355)
T ss_pred             hHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence            345678999 566666666665555544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=85.00  E-value=1.5  Score=30.95  Aligned_cols=30  Identities=23%  Similarity=0.122  Sum_probs=20.6

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||.+||+++..+..+..++.+.+.
T Consensus       288 ~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  317 (1146)
T PRK08633        288 LAGRLSGRHIELGLVPLGALGLALSLFLLP  317 (1146)
T ss_pred             HHHHHhCCceEccchhHHHHHHHHHHHHHH
Confidence            345677888888888777776666655444

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=84.83  E-value=2.5  Score=23.87  Aligned_cols=31  Identities=19%  Similarity=0.508  Sum_probs=18.0

Q ss_pred             hhhhhhchhHHHHHHHHHHHHHHHHHHHHhhc
Q psy16665          6 VLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFL   37 (71)
Q Consensus         6 ~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~   37 (71)
                      .+.||.-||-.+..|.. ..+++..+.++...
T Consensus        56 ~Vs~RM~rRm~~~~GiP-~~lG~~~f~~~y~l   86 (153)
T PF11947_consen   56 VVSNRMLRRMAVFVGIP-TALGVAVFVVFYYL   86 (153)
T ss_pred             HHHHHHHHHHHHHhchH-HHHHHHHHHHHHHH
Confidence            46788888877766654 34444444434333

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=84.70  E-value=2.6  Score=25.20  Aligned_cols=30  Identities=33%  Similarity=0.347  Sum_probs=21.1

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||++||+..........+....+.
T Consensus       262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  291 (352)
T PF07690_consen  262 LAGRLSDRFGRRRRLLIAILLLILGALGLL  291 (352)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            446678999998877777766666555544

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00893 2A0114 d-galactonate transporter

Probab=83.93  E-value=3  Score=25.08  Aligned_cols=13  Identities=38%  Similarity=0.107  Sum_probs=10.4

Q ss_pred             hhhhhhhhhchhH
Q psy16665          3 LSVVLVDKAGRRL   15 (71)
Q Consensus         3 ~~~~l~d~~gRR~   15 (71)
                      +..++.||++||+
T Consensus       270 ~~g~~~~~~~~~~  282 (399)
T TIGR00893       270 LGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHHHHHHhhcc
Confidence            3467889999996

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=83.70  E-value=6.8  Score=23.68  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=26.6

Q ss_pred             chhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      +.+..+.|+.|.|..+++|.....++...+..
T Consensus        54 ~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l   85 (250)
T PF06813_consen   54 ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWL   85 (250)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999888776653

>KOG0255|consensus

Probab=83.70  E-value=2.6  Score=27.36  Aligned_cols=31  Identities=32%  Similarity=0.569  Sum_probs=26.1

Q ss_pred             hhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY   34 (71)
Q Consensus         4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~   34 (71)
                      .....|+.|||..+..+.....++.+..+..
T Consensus       370 ~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~  400 (521)
T KOG0255|consen  370 NGLLLPEFGRRPPLFLSLFLAGIGLLLFGWL  400 (521)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHh
Confidence            3467899999999999999988888877754

>PRK11462 putative transporter; Provisional

Probab=83.18  E-value=4.2  Score=26.24  Aligned_cols=22  Identities=14%  Similarity=0.173  Sum_probs=15.7

Q ss_pred             hhhhhhhhhchhHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIM   24 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~   24 (71)
                      ++..+.||+|||+.+..+....
T Consensus       282 l~~~l~~r~gkk~~~~~~~~~~  303 (460)
T PRK11462        282 LAKPLTDWKCKVTIFWWTNALL  303 (460)
T ss_pred             HHHHHHHHhChHHHHHHHHHHH
Confidence            3567889999998876555433

>TIGR00806 rfc RFC reduced folate carrier

Probab=82.51  E-value=6.6  Score=26.36  Aligned_cols=32  Identities=16%  Similarity=0.068  Sum_probs=25.2

Q ss_pred             chhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      +++.++.||+|-|+.+..+.+.-.+...+++.
T Consensus        80 Ip~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f  111 (511)
T TIGR00806        80 VPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL  111 (511)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999998888877777666653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=82.26  E-value=3.1  Score=18.10  Aligned_cols=28  Identities=25%  Similarity=0.547  Sum_probs=17.1

Q ss_pred             hhhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy16665          8 VDKAGRRLLLLLSVIIMGLCLGVLGFYF   35 (71)
Q Consensus         8 ~d~~gRR~lll~g~~~~~~~~~~~~~~~   35 (71)
                      .|..||-|+.+++.+.-......+++++
T Consensus         2 ~~ttGRIPLWlVgtv~G~~vi~lvglFf   29 (40)
T PF01788_consen    2 ANTTGRIPLWLVGTVAGIAVIGLVGLFF   29 (40)
T ss_dssp             ---TTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccchHHHHHHHHHHHHHHHHhe
Confidence            3567999999888876666655666554

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....

>PRK03545 putative arabinose transporter; Provisional

Probab=81.88  E-value=7.9  Score=23.99  Aligned_cols=17  Identities=24%  Similarity=0.233  Sum_probs=11.9

Q ss_pred             hhhhhhhhhchhHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLL   19 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~   19 (71)
                      +..++.||.|||++.+.
T Consensus       260 ~~g~l~dr~~~~~~~~~  276 (390)
T PRK03545        260 LFSRLGNRHPSGFLLIA  276 (390)
T ss_pred             HHHHHhhccchhHHHHH
Confidence            34568899998875433

>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins

Probab=81.08  E-value=2.5  Score=26.99  Aligned_cols=31  Identities=13%  Similarity=0.252  Sum_probs=25.8

Q ss_pred             hhhhhhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy16665          5 VVLVDKAGRRLLLLLSVIIMGLCLGVLGFYF   35 (71)
Q Consensus         5 ~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~   35 (71)
                      .++..|..||+.++.|.+++.+.+..++-+.
T Consensus        78 pF~~~r~~~R~~~~~G~~~f~~~l~~lS~fI  108 (385)
T PF06898_consen   78 PFFLKRLRRRKGFVAGIVLFLALLYILSSFI  108 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCeE
Confidence            4678899999999999999888888887543

YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	71
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.55
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.21
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	96.75
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	96.73
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	96.18
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	96.05
2xut_A	524	Proton/peptide symporter family protein; transport	95.87
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	95.71
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.3
2cfq_A	417	Lactose permease; transport, transport mechanism,	94.62
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	94.17
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	91.74
3arc_J	40	Photosystem II reaction center protein J; PSII, me	85.99

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.55  E-value=1.7e-07  Score=57.46  Aligned_cols=63  Identities=25%  Similarity=0.549  Sum_probs=48.8

Q ss_pred             chhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccHHHHHHHHHHHHHhhcccccccC
Q psy16665          2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDKNL   71 (71)
Q Consensus         2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   71 (71)
                      +++.+++||+|||+.++.+...+.++++.++.....       ....+..+..++++..+++.+++|++|
T Consensus       330 ~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (491)
T 4gc0_A          330 VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-------QAPGIVALLSMLFYVAAFAMSWGPVCW  392 (491)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-------TCCHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHHHHhHHHHHHH
Confidence            356788999999999999999999988877754322       234566777777888889988888754

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.21  E-value=0.00028  Score=43.25  Aligned_cols=30  Identities=17%  Similarity=0.097  Sum_probs=24.6

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +..++.||+|||+.++.+.....++.+..+
T Consensus        74 ~~G~laDr~GRk~~l~~~~~l~~i~~i~~a  103 (491)
T 4gc0_A           74 LGGYCSNRFGRRDSLKIAAVLFFISGVGSA  103 (491)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999988887766554

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=96.75  E-value=0.0054  Score=36.88  Aligned_cols=30  Identities=10%  Similarity=0.159  Sum_probs=25.4

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++.+...
T Consensus        80 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~  109 (438)
T 3o7q_A           80 PAGILMKKLSYKAGIITGLFLYALGAALFW  109 (438)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999998888877663

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=96.73  E-value=0.0045  Score=37.31  Aligned_cols=31  Identities=19%  Similarity=0.403  Sum_probs=26.2

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      +...+.||+|||+.++.+.....++.+..+.
T Consensus        81 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~  111 (451)
T 1pw4_A           81 IMGSVSDRSNPRVFLPAGLILAAAVMLFMGF  111 (451)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence            4567899999999999999988888777664

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=96.18  E-value=0.02  Score=35.02  Aligned_cols=30  Identities=20%  Similarity=0.272  Sum_probs=24.9

Q ss_pred             hhhhhhhh-hchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDK-AGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~-~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ++.++.|| +|||+.++.+.....++.+..+
T Consensus        73 ~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~  103 (491)
T 4aps_A           73 IGGFVADRIIGARPAVFWGGVLIMLGHIVLA  103 (491)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence            45678999 8999999999988887776654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=96.05  E-value=0.0066  Score=35.95  Aligned_cols=31  Identities=26%  Similarity=0.283  Sum_probs=24.8

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      +..++.||+|||+.++.+.....++.+....
T Consensus        54 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   84 (375)
T 2gfp_A           54 FYGPISDRVGRRPVILVGMSIFMLATLVAVT   84 (375)
T ss_dssp             THHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence            4567899999999999988888777666543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=95.87  E-value=0.03  Score=34.62  Aligned_cols=30  Identities=20%  Similarity=0.227  Sum_probs=24.4

Q ss_pred             hhhhhhhhh-chhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKA-GRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~-gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ++.++.||+ |||+.++.+.....++.+..+
T Consensus        73 ~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~  103 (524)
T 2xut_A           73 LGGWIADRFFGKYNTILWLSLIYCVGHAFLA  103 (524)
T ss_dssp             HHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            456789999 999999998888777766654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=95.71  E-value=0.026  Score=33.88  Aligned_cols=30  Identities=10%  Similarity=-0.001  Sum_probs=23.5

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      ++.++.||+|||+++..+.....++.+.+.
T Consensus       314 ~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  343 (438)
T 3o7q_A          314 TGTWLISRFAPHKVLAAYALIAMALCLISA  343 (438)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            456788999999999988887777655543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.30  E-value=0.019  Score=34.79  Aligned_cols=29  Identities=21%  Similarity=0.319  Sum_probs=22.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL   31 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~   31 (71)
                      +..++.||+|||+++..+.....+..+.+
T Consensus       278 ~~g~l~dr~g~~~~l~~~~~~~~~~~~~~  306 (417)
T 2cfq_A          278 FAPLIINRIGGKNALLLAGTIMSVRIIGS  306 (417)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999988877776665444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=94.62  E-value=0.011  Score=35.81  Aligned_cols=23  Identities=39%  Similarity=0.289  Sum_probs=18.4

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMG   25 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~   25 (71)
                      +..++.||+|||+.++.+.....
T Consensus        62 ~~G~lsDr~Grr~~l~~~~~~~~   84 (417)
T 2cfq_A           62 LFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHTT
T ss_pred             HHHHHHHHhcchHHHHHHHHHHH
Confidence            45678999999999988776553

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=94.17  E-value=0.082  Score=32.33  Aligned_cols=30  Identities=10%  Similarity=0.081  Sum_probs=18.5

Q ss_pred             hhhhhhhhchhHHHH-----HHHHHHHHHHHHHHH
Q psy16665          4 SVVLVDKAGRRLLLL-----LSVIIMGLCLGVLGF   33 (71)
Q Consensus         4 ~~~l~d~~gRR~lll-----~g~~~~~~~~~~~~~   33 (71)
                      ..++.||+|||+...     .+...+.++...+..
T Consensus       339 ~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~  373 (491)
T 4aps_A          339 FAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI  373 (491)
T ss_dssp             HHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH
T ss_pred             HHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Confidence            456889999987655     666666666555544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=91.74  E-value=0.39  Score=28.79  Aligned_cols=27  Identities=19%  Similarity=0.080  Sum_probs=19.4

Q ss_pred             hhhhhhhhh--chhHHHHHHHHHHH-HHHH
Q psy16665          3 LSVVLVDKA--GRRLLLLLSVIIMG-LCLG   29 (71)
Q Consensus         3 ~~~~l~d~~--gRR~lll~g~~~~~-~~~~   29 (71)
                      +..++.||+  |||+.+..+..... ++.+
T Consensus       307 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  336 (451)
T 1pw4_A          307 LCGWMSDKVFRGNRGATGVFFMTLVTIATI  336 (451)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            456788999  99998887776555 4433

>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*

Probab=85.99  E-value=1.1  Score=18.90  Aligned_cols=28  Identities=18%  Similarity=0.422  Sum_probs=18.5

Q ss_pred             hhhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy16665          8 VDKAGRRLLLLLSVIIMGLCLGVLGFYF   35 (71)
Q Consensus         8 ~d~~gRR~lll~g~~~~~~~~~~~~~~~   35 (71)
                      +|..||-|+.+++.+.-....-.+++++
T Consensus         2 m~~tGRiPLWlvgtv~G~~vi~~~giFf   29 (40)
T 3arc_J            2 MSEGGRIPLWIVATVAGMGVIVIVGLFF   29 (40)
T ss_dssp             -CCTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCcccEEeeeeehhhhhhheeeEEE
Confidence            4667999998888876555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	71
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.02
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	96.89
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	95.17
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	87.79

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00062  Score=39.34  Aligned_cols=31  Identities=19%  Similarity=0.403  Sum_probs=26.0

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF   33 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~   33 (71)
                      +...+.||+|||+.++.+.....++.+..+.
T Consensus        78 ~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~  108 (447)
T d1pw4a_          78 IMGSVSDRSNPRVFLPAGLILAAAVMLFMGF  108 (447)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHHhhccc
Confidence            4567899999999999999888888776654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00037  Score=39.33  Aligned_cols=30  Identities=30%  Similarity=0.204  Sum_probs=23.4

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||+|||+.++.+.....++.....
T Consensus        62 ~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~   91 (417)
T d1pv7a_          62 LFGLLSDKLGLRKYLLWIITGMLVMFAPFF   91 (417)
T ss_dssp             HHHHHHHHHTTCTHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            456799999999999988877776655544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.051  Score=30.17  Aligned_cols=30  Identities=20%  Similarity=0.313  Sum_probs=23.9

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG   32 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~   32 (71)
                      +...+.||.|||+.+..+.....++.+.+.
T Consensus       278 ~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~  307 (417)
T d1pv7a_         278 FAPLIINRIGGKNALLLAGTIMSVRIIGSS  307 (417)
T ss_dssp             THHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcccccccchhhhHHHHHHhhhccc
Confidence            345688999999999999888877766654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=87.79  E-value=0.93  Score=25.47  Aligned_cols=24  Identities=29%  Similarity=0.105  Sum_probs=15.7

Q ss_pred             hhhhhhhhhchhHHHHHHHHHHHH
Q psy16665          3 LSVVLVDKAGRRLLLLLSVIIMGL   26 (71)
Q Consensus         3 ~~~~l~d~~gRR~lll~g~~~~~~   26 (71)
                      ++.++.||.+||+...........
T Consensus       304 ~~g~~~~~~~~~~~~~~~~~~~~~  327 (447)
T d1pw4a_         304 LCGWMSDKVFRGNRGATGVFFMTL  327 (447)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             hhhhhhhhccccccccccchhHHH
Confidence            456788999988765555444333