Psyllid ID: psy16666

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MIKNSPTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQYSSPSLTPFYYYCNNKGRTD
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHcHcEEEEEEccccccc
Coil and Loop (DISEMBL)
miknsptsgigepsVYHALVVIFLEFFAWGLLTMPIISvlnrtfpdhtfLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTclpiplmtldTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLvssetnqysspsltpfyyycnnkgrtd
Flexible Loop (DISEMBL)
miknsptsgigepSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVssetnqysspsltpfyyycnnkgrtd
Low Complexity Region (SEG)
MIKNSPTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQYSSPSLTPFYYYCNNKGRTD
Disordered region (IsUnstruct)
*************SVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSS*******PSLTPFYYYCN******
Disordered Region (DISOPRED)
****************HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQYSSPSLTPFYY*********
Disordered Region (DISEMBL)
**********GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQYSSPSLTPFYYYCNNKGRTD
Disordered Region (DISPRO)
*****PTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQYSSPSLTPFYYYCNNK****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIKNSPTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQYSSPSLTPFYYYCNNKGRTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
P70187	490	Hippocampus abundant tran	yes	N/A	0.856	0.291	0.756	3e-59
Q96MC6	490	Hippocampus abundant tran	yes	N/A	0.856	0.291	0.756	3e-59
A4IF94	502	Hippocampus abundant tran	no	N/A	0.892	0.296	0.708	1e-56
Q5SR56	506	Hippocampus abundant tran	no	N/A	0.892	0.294	0.701	2e-56
Q8CIA9	507	Hippocampus abundant tran	no	N/A	0.874	0.287	0.709	7e-56
B2RYH9	507	Hippocampus abundant tran	no	N/A	0.940	0.309	0.664	1e-55
Q5VZR4	134	Hippocampus abundant tran	no	N/A	0.556	0.694	0.741	2e-34
P02981	396	Tetracycline resistance p	yes	N/A	0.670	0.282	0.310	2e-08
P02982	399	Tetracycline resistance p	yes	N/A	0.670	0.280	0.275	8e-07
Q07282	405	Tetracycline resistance p	yes	N/A	0.772	0.318	0.291	3e-05

>sp|P70187|HIAT1_MOUSE Hippocampus abundant transcript 1 protein OS=Mus musculus GN=Hiat1 PE=2 SV=3

 Score =  227 bits (579), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/144 (75%), Positives = 126/144 (87%), Gaps = 1/144 (0%)

Query: 1   MIKNSPT-SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIK 59
           +IK+  T  GIG PSVYHA++VIFLEFFAWGLLT P + VL+ TFP HTFLMNGLI G+K
Sbjct: 22  IIKDGGTPQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVK 81

Query: 60  GFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFS 119
           G LSFLSAPLIGALSD+WGRK FLL+TVF TC PIPLM +  WW+FA+IS+SGVFAVTFS
Sbjct: 82  GLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISVSGVFAVTFS 141

Query: 120 VVFAYVADVTEEHERSLAYGLVSS 143
           VVFAYVAD+T+EHERS+AYGLVS+
Sbjct: 142 VVFAYVADITQEHERSMAYGLVSA 165

Mus musculus (taxid: 10090)

>sp|Q96MC6|HIAT1_HUMAN Hippocampus abundant transcript 1 protein OS=Homo sapiens GN=HIAT1 PE=2 SV=2

 Score =  227 bits (578), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/144 (75%), Positives = 126/144 (87%), Gaps = 1/144 (0%)

Query: 1   MIKNSPT-SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIK 59
           +IK+  T  GIG PSVYHA++VIFLEFFAWGLLT P + VL+ TFP HTFLMNGLI G+K
Sbjct: 22  IIKDGGTPQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVK 81

Query: 60  GFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFS 119
           G LSFLSAPLIGALSD+WGRK FLL+TVF TC PIPLM +  WW+FA+IS+SGVFAVTFS
Sbjct: 82  GLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISVSGVFAVTFS 141

Query: 120 VVFAYVADVTEEHERSLAYGLVSS 143
           VVFAYVAD+T+EHERS+AYGLVS+
Sbjct: 142 VVFAYVADITQEHERSMAYGLVSA 165

Homo sapiens (taxid: 9606)

>sp|A4IF94|HIAL1_BOVIN Hippocampus abundant transcript-like protein 1 OS=Bos taurus GN=HIATL1 PE=2 SV=1

 Score =  218 bits (555), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 107/151 (70%), Positives = 124/151 (82%), Gaps = 2/151 (1%)

Query: 8   SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSA 67
            G G PSVYHA +VIFLEFFAWGLLT  +++VL+ TFP HTFLMNGLI G+KG LSFLSA
Sbjct: 35  QGFGRPSVYHAAIVIFLEFFAWGLLTTSMLTVLHETFPQHTFLMNGLIQGVKGLLSFLSA 94

Query: 68  PLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVAD 127
           PLIGALSD+WGRK FLL TVF TC PIPLM +  WW+FAMISISGVF+VTFSV+FAYVAD
Sbjct: 95  PLIGALSDVWGRKPFLLGTVFFTCFPIPLMRISPWWYFAMISISGVFSVTFSVIFAYVAD 154

Query: 128 VTEEHERSLAYGLVSS--ETNQYSSPSLTPF 156
           VT+EHERS AYG VS+    +  SSP++  +
Sbjct: 155 VTQEHERSTAYGWVSATFAASLVSSPAIGAY 185

Bos taurus (taxid: 9913)

>sp|Q5SR56|HIAL1_HUMAN Hippocampus abundant transcript-like protein 1 OS=Homo sapiens GN=HIATL1 PE=2 SV=3

 Score =  218 bits (554), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 124/151 (82%), Gaps = 2/151 (1%)

Query: 8   SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSA 67
            G G PSVYHA +VIFLEFFAWGLLT P+++VL+ TF  HTFLMNGLI G+KG LSFLSA
Sbjct: 38  QGFGRPSVYHAAIVIFLEFFAWGLLTTPMLTVLHETFSQHTFLMNGLIQGVKGLLSFLSA 97

Query: 68  PLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVAD 127
           PLIGALSD+WGRK FLL TVF TC PIPLM +  WW+FAMIS+SGVF+VTFSV+FAYVAD
Sbjct: 98  PLIGALSDVWGRKPFLLGTVFFTCFPIPLMRISPWWYFAMISVSGVFSVTFSVIFAYVAD 157

Query: 128 VTEEHERSLAYGLVSS--ETNQYSSPSLTPF 156
           VT+EHERS AYG VS+    +  SSP++  +
Sbjct: 158 VTQEHERSTAYGWVSATFAASLVSSPAIGAY 188

Homo sapiens (taxid: 9606)

>sp|Q8CIA9|HIAL1_MOUSE Hippocampus abundant transcript-like protein 1 OS=Mus musculus GN=Hiatl1 PE=2 SV=3

 Score =  216 bits (549), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 105/148 (70%), Positives = 122/148 (82%), Gaps = 2/148 (1%)

Query: 8   SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSA 67
            G G PSVYHA  VIFLEFFAWGLLT P+++VL+ TFP HTFLMNGLI G+KG LSFLSA
Sbjct: 40  QGFGHPSVYHAAFVIFLEFFAWGLLTTPMLTVLHETFPQHTFLMNGLIQGVKGLLSFLSA 99

Query: 68  PLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVAD 127
           PLIGALSD+WGRK FLL TVF TC PIPLM ++ WW+F MIS+SGVF+VTFSV+FAYVAD
Sbjct: 100 PLIGALSDVWGRKPFLLGTVFFTCFPIPLMRINPWWYFGMISVSGVFSVTFSVIFAYVAD 159

Query: 128 VTEEHERSLAYGLVSS--ETNQYSSPSL 153
            T+EHERS AYG VS+    +  SSP++
Sbjct: 160 FTQEHERSTAYGWVSATFAASLVSSPAI 187

Mus musculus (taxid: 10090)

>sp|B2RYH9|HIAL1_RAT Hippocampus abundant transcript-like protein 1 OS=Rattus norvegicus GN=Hiatl1 PE=2 SV=1

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 107/161 (66%), Positives = 126/161 (78%), Gaps = 4/161 (2%)

Query: 8   SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSA 67
            G G+PSVYHA  VIF EFFAWGLLT P+++VL+ TFP HTFLMNGLI G+KG LSFLSA
Sbjct: 40  QGFGQPSVYHAAFVIFFEFFAWGLLTTPMLTVLHETFPQHTFLMNGLIQGVKGLLSFLSA 99

Query: 68  PLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVAD 127
           PLIGALSD+WGRK FLL TVF TC PIPLM +  WW+F MIS+SGVF+VTFSV+FAYVAD
Sbjct: 100 PLIGALSDVWGRKPFLLGTVFFTCFPIPLMRISPWWYFGMISVSGVFSVTFSVIFAYVAD 159

Query: 128 VTEEHERSLAYGLVSS--ETNQYSSPSLTPFYYYCNNKGRT 166
            T+EHERS AYG VS+    +  SSP++    Y  +N G +
Sbjct: 160 FTQEHERSTAYGWVSATFAASLVSSPAIG--TYLSSNYGDS 198

Rattus norvegicus (taxid: 10116)

>sp|Q5VZR4|HIAL2_HUMAN Hippocampus abundant transcript-like protein 2 OS=Homo sapiens GN=HIATL2 PE=2 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/93 (74%), Positives = 77/93 (82%)

Query: 8   SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSA 67
            G G PSVYHA +VIFLEFFAWGLLT P+++VL+ TF  HTFLMNGLI G+KG LSFLSA
Sbjct: 38  QGFGPPSVYHAAIVIFLEFFAWGLLTTPMLTVLHETFSQHTFLMNGLIQGVKGLLSFLSA 97

Query: 68  PLIGALSDLWGRKLFLLITVFVTCLPIPLMTLD 100
           PLIGALSD+WGRK FLL TVF TC PIPLM + 
Sbjct: 98  PLIGALSDVWGRKPFLLGTVFFTCFPIPLMRIS 130

Homo sapiens (taxid: 9606)

>sp|P02981|TCR3_ECOLX Tetracycline resistance protein, class C OS=Escherichia coli GN=tetA PE=1 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 4/116 (3%)

Query: 32  LTMPIISVLNRTF--PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 89
           L MP++  L R     D      G+++ +   + FL AP++GALSD +GR+  LL ++  
Sbjct: 23  LVMPVLPGLLRDIVHSDSIASHYGVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLG 82

Query: 90  TCLPIPLM--TLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSS 143
             +   +M  T   W  +A   ++G+   T +V  AY+AD+T+  +R+  +GL+S+
Sbjct: 83  ATIDYAIMATTPVLWILYAGRIVAGITGATGAVAGAYIADITDGEDRARHFGLMSA 138

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|P02982|TCR1_ECOLX Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 4/116 (3%)

Query: 32  LTMPIISVLNRTF--PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 89
           L MP++  L R     +      G+++ +   + F  AP++GALSD +GR+  LL+++  
Sbjct: 23  LIMPVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAG 82

Query: 90  TCLPIPLMTLD--TWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSS 143
             +   +M      W  +    ++G+   T +V  AY+AD+T+  ER+  +G +S+
Sbjct: 83  AAVDYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSA 138

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|Q07282|TCR5_ECOLX Tetracycline resistance protein, class E OS=Escherichia coli GN=tetA PE=3 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 5/134 (3%)

Query: 14  SVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMN--GLIMGIKGFLSFLSAPLIG 71
           +V  ALV+IFL+    G++ MP++  L R F     +    G+++ +   +  + APL+G
Sbjct: 4   TVMMALVIIFLDAMGIGII-MPVLPALLREFVGKANVAENYGVLLALYAMMQVIFAPLLG 62

Query: 72  ALSDLWGRKLFLLITVFVTCLPIPLMTLDT--WWFFAMISISGVFAVTFSVVFAYVADVT 129
             SD  GR+  LL+++    L   LM   +  W  +    I+G+   T +V  + +ADVT
Sbjct: 63  RWSDRIGRRPVLLLSLLGATLDYALMATASVVWVLYLGRLIAGITGATGAVAASTIADVT 122

Query: 130 EEHERSLAYGLVSS 143
            E  R+  +G++ +
Sbjct: 123 PEESRTHWFGMMGA 136

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
242008091	399	Hippocampus abundant transcript 1 protei	0.802	0.335	0.910	7e-65
270008667	532	hypothetical protein TcasGA2_TC015216 [T	0.850	0.266	0.852	2e-63
357602333	455	hypothetical protein KGM_14170 [Danaus p	0.892	0.327	0.821	4e-63
170031034	660	hippocampus abundant 1 protein [Culex qu	0.820	0.207	0.854	5e-63
24656463	680	CG11537, isoform A [Drosophila melanogas	0.820	0.201	0.854	5e-63
307205753	524	Hippocampus abundant transcript 1 protei	0.844	0.269	0.858	6e-63
386770446	680	CG11537, isoform F [Drosophila melanogas	0.820	0.201	0.854	6e-63
195374620	676	GJ12706 [Drosophila virilis] gi|19415325	0.820	0.202	0.854	6e-63
195442368	712	GK18034 [Drosophila willistoni] gi|19416	0.820	0.192	0.854	6e-63
161080924	705	CG11537, isoform D [Drosophila melanogas	0.820	0.194	0.854	6e-63

>gi|242008091|ref|XP_002424846.1| Hippocampus abundant transcript 1 protein, putative [Pediculus humanus corporis] gi|212508396|gb|EEB12108.1| Hippocampus abundant transcript 1 protein, putative [Pediculus humanus corporis]

 Score =  251 bits (641), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/134 (91%), Positives = 129/134 (96%)

Query: 7   TSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLS 66
           TSGIGEP+VYHALVVIFLEFFAWGLLTMPII+VLN TFPDHTFLMNG+IMGIKGFLSFLS
Sbjct: 30  TSGIGEPNVYHALVVIFLEFFAWGLLTMPIIAVLNETFPDHTFLMNGIIMGIKGFLSFLS 89

Query: 67  APLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVA 126
           APLIGALSD+WGRK FLLITVF TC PIPLMT++TWWFFAMISISG+FAVTFSVVFAYVA
Sbjct: 90  APLIGALSDVWGRKFFLLITVFFTCAPIPLMTVNTWWFFAMISISGIFAVTFSVVFAYVA 149

Query: 127 DVTEEHERSLAYGL 140
           DVTEE ERSLAYGL
Sbjct: 150 DVTEESERSLAYGL 163

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008667|gb|EFA05115.1| hypothetical protein TcasGA2_TC015216 [Tribolium castaneum]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 121/142 (85%), Positives = 134/142 (94%)

Query: 2   IKNSPTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGF 61
           +K  PTSGIG PS+YHALVVIFLEFFAWGLLTMP+ISVLN TFPDHTFLMNGLIMGIKG 
Sbjct: 72  LKYPPTSGIGMPSLYHALVVIFLEFFAWGLLTMPVISVLNTTFPDHTFLMNGLIMGIKGL 131

Query: 62  LSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVV 121
           LSFLSAPL+GALSD+ GRKLFLLITVF TCLPIPLMT++T+WFFAM+SISGVFAVTFSVV
Sbjct: 132 LSFLSAPLVGALSDVCGRKLFLLITVFFTCLPIPLMTINTFWFFAMVSISGVFAVTFSVV 191

Query: 122 FAYVADVTEEHERSLAYGLVSS 143
           FAYVADVT++ +RSLAYGLVS+
Sbjct: 192 FAYVADVTDQKDRSLAYGLVSA 213

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357602333|gb|EHJ63356.1| hypothetical protein KGM_14170 [Danaus plexippus]

 Score =  245 bits (626), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 124/151 (82%), Positives = 134/151 (88%), Gaps = 2/151 (1%)

Query: 8   SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSA 67
           SGIGEPSV+HALVVIFLEFFAWGLLTMPIISVLN TFPDHTFLMNGLIMGIKG LSFLSA
Sbjct: 2   SGIGEPSVFHALVVIFLEFFAWGLLTMPIISVLNATFPDHTFLMNGLIMGIKGILSFLSA 61

Query: 68  PLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVAD 127
           PLIGALSD+WGRK FLL+TVF TC PIPLMT++TWWFFAMISISGVFAVTFS+VFAYVAD
Sbjct: 62  PLIGALSDVWGRKFFLLVTVFFTCAPIPLMTINTWWFFAMISISGVFAVTFSIVFAYVAD 121

Query: 128 VTEEHERSLAYGLVSS--ETNQYSSPSLTPF 156
           VT E ERS AYGLVS+    +   SP+L  +
Sbjct: 122 VTTEAERSRAYGLVSATFAASMVISPALGAY 152

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170031034|ref|XP_001843392.1| hippocampus abundant 1 protein [Culex quinquefasciatus] gi|167868872|gb|EDS32255.1| hippocampus abundant 1 protein [Culex quinquefasciatus]

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 117/137 (85%), Positives = 129/137 (94%)

Query: 7   TSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLS 66
           +SGIGEPSVYHALVVIFLEFFAWGLLTMP+I+VLN+TFPDHTFLMNGL+MGIKG LSFLS
Sbjct: 281 SSGIGEPSVYHALVVIFLEFFAWGLLTMPVINVLNQTFPDHTFLMNGLVMGIKGILSFLS 340

Query: 67  APLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVA 126
           APLIGALSD+WGRK FLLITVF TC PIPLM++++WWFFAMISISGVFAVTFSVVFAYVA
Sbjct: 341 APLIGALSDVWGRKFFLLITVFFTCAPIPLMSINSWWFFAMISISGVFAVTFSVVFAYVA 400

Query: 127 DVTEEHERSLAYGLVSS 143
           DVT   +RS AYGLVS+
Sbjct: 401 DVTTVEDRSRAYGLVSA 417

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24656463|ref|NP_728811.1| CG11537, isoform A [Drosophila melanogaster] gi|24656468|ref|NP_728812.1| CG11537, isoform B [Drosophila melanogaster] gi|7292310|gb|AAF47717.1| CG11537, isoform A [Drosophila melanogaster] gi|7292311|gb|AAF47718.1| CG11537, isoform B [Drosophila melanogaster]

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 117/137 (85%), Positives = 127/137 (92%)

Query: 7   TSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLS 66
           +SGIGEPSV+HALVVIFLEFFAWGLLTMPIIS LN+TFPDHTFLMNGL+MGIKG LSFLS
Sbjct: 220 SSGIGEPSVHHALVVIFLEFFAWGLLTMPIISTLNQTFPDHTFLMNGLVMGIKGILSFLS 279

Query: 67  APLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVA 126
           APLIGALSD+WGRK FLL+TVF TCLPIPLM+++TWWFFAMISISG FAVTFSVVFAYVA
Sbjct: 280 APLIGALSDIWGRKFFLLVTVFFTCLPIPLMSINTWWFFAMISISGAFAVTFSVVFAYVA 339

Query: 127 DVTEEHERSLAYGLVSS 143
           DVT   ERS AYGL S+
Sbjct: 340 DVTTPEERSKAYGLASA 356

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205753|gb|EFN83983.1| Hippocampus abundant transcript 1 protein [Harpegnathos saltator]

 Score =  245 bits (625), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 121/141 (85%), Positives = 128/141 (90%)

Query: 3   KNSPTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFL 62
           K+  +SGIGE SVYHALVVIFLEFFAWGLLTMPIISVLN TFPDHTFLMNGLIMGIKG L
Sbjct: 42  KHLKSSGIGEASVYHALVVIFLEFFAWGLLTMPIISVLNETFPDHTFLMNGLIMGIKGIL 101

Query: 63  SFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVF 122
           SFLSAPLIGALSD+WGRK FL ITV  TC PIPLM+ +TWWFFAMISISGVFA TFSVVF
Sbjct: 102 SFLSAPLIGALSDVWGRKFFLFITVAFTCAPIPLMSFNTWWFFAMISISGVFACTFSVVF 161

Query: 123 AYVADVTEEHERSLAYGLVSS 143
           AYVADVTEEH+RS AYGLVS+
Sbjct: 162 AYVADVTEEHQRSPAYGLVSA 182

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386770446|ref|NP_001246588.1| CG11537, isoform F [Drosophila melanogaster] gi|383291712|gb|AFH04259.1| CG11537, isoform F [Drosophila melanogaster]

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 117/137 (85%), Positives = 127/137 (92%)

Query: 7   TSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLS 66
           +SGIGEPSV+HALVVIFLEFFAWGLLTMPIIS LN+TFPDHTFLMNGL+MGIKG LSFLS
Sbjct: 220 SSGIGEPSVHHALVVIFLEFFAWGLLTMPIISTLNQTFPDHTFLMNGLVMGIKGILSFLS 279

Query: 67  APLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVA 126
           APLIGALSD+WGRK FLL+TVF TCLPIPLM+++TWWFFAMISISG FAVTFSVVFAYVA
Sbjct: 280 APLIGALSDIWGRKFFLLVTVFFTCLPIPLMSINTWWFFAMISISGAFAVTFSVVFAYVA 339

Query: 127 DVTEEHERSLAYGLVSS 143
           DVT   ERS AYGL S+
Sbjct: 340 DVTTPEERSKAYGLASA 356

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195374620|ref|XP_002046101.1| GJ12706 [Drosophila virilis] gi|194153259|gb|EDW68443.1| GJ12706 [Drosophila virilis]

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 117/137 (85%), Positives = 126/137 (91%)

Query: 7   TSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLS 66
           +SGIGEPSV+HALVVIFLEFFAWGLLTMPIIS LNRTFPDHTFLMNGL+MGIKG LSFLS
Sbjct: 218 SSGIGEPSVHHALVVIFLEFFAWGLLTMPIISTLNRTFPDHTFLMNGLVMGIKGILSFLS 277

Query: 67  APLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVA 126
           APLIGALSD+WGRK FLL+TVF TC+PIPLM ++TWWFFAMISISG FAVTFSVVFAYVA
Sbjct: 278 APLIGALSDIWGRKFFLLVTVFFTCMPIPLMCVNTWWFFAMISISGAFAVTFSVVFAYVA 337

Query: 127 DVTEEHERSLAYGLVSS 143
           DVT   ERS AYGL S+
Sbjct: 338 DVTTPEERSKAYGLASA 354

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195442368|ref|XP_002068930.1| GK18034 [Drosophila willistoni] gi|194165015|gb|EDW79916.1| GK18034 [Drosophila willistoni]

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 117/137 (85%), Positives = 127/137 (92%)

Query: 7   TSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLS 66
           +SGIGEPSV+HALVVIFLEFFAWGLLTMPIIS LN+TFPDHTFLMNGL+MGIKG LSFLS
Sbjct: 254 SSGIGEPSVHHALVVIFLEFFAWGLLTMPIISTLNQTFPDHTFLMNGLVMGIKGILSFLS 313

Query: 67  APLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVA 126
           APLIGALSD+WGRK FLL+TVF TCLPIPLM+++TWWFFAMISISG FAVTFSVVFAYVA
Sbjct: 314 APLIGALSDIWGRKFFLLVTVFFTCLPIPLMSINTWWFFAMISISGAFAVTFSVVFAYVA 373

Query: 127 DVTEEHERSLAYGLVSS 143
           DVT   ERS AYGL S+
Sbjct: 374 DVTTPEERSKAYGLASA 390

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161080924|ref|NP_001097489.1| CG11537, isoform D [Drosophila melanogaster] gi|161080926|ref|NP_001097490.1| CG11537, isoform E [Drosophila melanogaster] gi|442629880|ref|NP_001261354.1| CG11537, isoform G [Drosophila melanogaster] gi|45825071|gb|AAS77443.1| GH21943p [Drosophila melanogaster] gi|158028420|gb|ABW08449.1| CG11537, isoform D [Drosophila melanogaster] gi|158028421|gb|ABW08450.1| CG11537, isoform E [Drosophila melanogaster] gi|440215232|gb|AGB94049.1| CG11537, isoform G [Drosophila melanogaster]

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 117/137 (85%), Positives = 127/137 (92%)

Query: 7   TSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLS 66
           +SGIGEPSV+HALVVIFLEFFAWGLLTMPIIS LN+TFPDHTFLMNGL+MGIKG LSFLS
Sbjct: 245 SSGIGEPSVHHALVVIFLEFFAWGLLTMPIISTLNQTFPDHTFLMNGLVMGIKGILSFLS 304

Query: 67  APLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVA 126
           APLIGALSD+WGRK FLL+TVF TCLPIPLM+++TWWFFAMISISG FAVTFSVVFAYVA
Sbjct: 305 APLIGALSDIWGRKFFLLVTVFFTCLPIPLMSINTWWFFAMISISGAFAVTFSVVFAYVA 364

Query: 127 DVTEEHERSLAYGLVSS 143
           DVT   ERS AYGL S+
Sbjct: 365 DVTTPEERSKAYGLASA 381

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
FB|FBgn0035400	705	CG11537 [Drosophila melanogast	0.820	0.194	0.854	1.8e-62
ZFIN|ZDB-GENE-030131-834	493	hiat1a "hippocampus abundant t	0.916	0.310	0.717	1.7e-57
UNIPROTKB|Q5ZJK7	492	HCN2 "Uncharacterized protein"	0.868	0.294	0.741	4.6e-57
UNIPROTKB|A6QLP5	490	HIAT1 "Uncharacterized protein	0.916	0.312	0.711	4.6e-57
UNIPROTKB|Q96MC6	490	HIAT1 "Hippocampus abundant tr	0.916	0.312	0.711	4.6e-57
MGI|MGI:1201609	490	Hiat1 "hippocampus abundant ge	0.916	0.312	0.711	4.6e-57
RGD|1305281	490	Hiat1 "hippocampus abundant tr	0.916	0.312	0.711	4.6e-57
UNIPROTKB|F1S559	462	LOC100622510 "Uncharacterized	0.868	0.313	0.734	1.6e-56
ZFIN|ZDB-GENE-040426-2935	485	hiat1b "hippocampus abundant t	0.856	0.294	0.736	2e-56
UNIPROTKB|F1PLI9	506	LOC476363 "Uncharacterized pro	0.868	0.286	0.727	2.3e-55

FB|FBgn0035400 CG11537 [Drosophila melanogaster (taxid:7227)]

 Score = 621 (223.7 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
 Identities = 117/137 (85%), Positives = 127/137 (92%)

Query:     7 TSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLS 66
             +SGIGEPSV+HALVVIFLEFFAWGLLTMPIIS LN+TFPDHTFLMNGL+MGIKG LSFLS
Sbjct:   245 SSGIGEPSVHHALVVIFLEFFAWGLLTMPIISTLNQTFPDHTFLMNGLVMGIKGILSFLS 304

Query:    67 APLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVA 126
             APLIGALSD+WGRK FLL+TVF TCLPIPLM+++TWWFFAMISISG FAVTFSVVFAYVA
Sbjct:   305 APLIGALSDIWGRKFFLLVTVFFTCLPIPLMSINTWWFFAMISISGAFAVTFSVVFAYVA 364

Query:   127 DVTEEHERSLAYGLVSS 143
             DVT   ERS AYGL S+
Sbjct:   365 DVTTPEERSKAYGLASA 381

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-834 hiat1a "hippocampus abundant transcript 1a" [Danio rerio (taxid:7955)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 112/156 (71%), Positives = 134/156 (85%)

Query:     1 MIKNSPT-SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIK 59
             +IK+  T  GIGEPSVYHA+VVIFLEFFAWGLLT P+++VL +TFP HTFLMNGLI G+K
Sbjct:    22 IIKDGGTPQGIGEPSVYHAVVVIFLEFFAWGLLTTPMLAVLRQTFPQHTFLMNGLIHGVK 81

Query:    60 GFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFS 119
             G LSFLSAPLIGALSD+WGRK FLL+TVF TC PIPLM +  WW+FA+IS+SGVFAVTFS
Sbjct:    82 GLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISMSGVFAVTFS 141

Query:   120 VVFAYVADVTEEHERSLAYGLVSSE--TNQYSSPSL 153
             V+FAYVAD+T+EHERS AYGLVS+    +  +SP++
Sbjct:   142 VIFAYVADITQEHERSTAYGLVSATFAASLVTSPAI 177

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|Q5ZJK7 HCN2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 109/147 (74%), Positives = 130/147 (88%)

Query:     9 GIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAP 68
             GIGEPSVYHA+VVIFLEFFAWGLLT P+++VL++TFP HTFLMNGLI G+KG LSFLSAP
Sbjct:    31 GIGEPSVYHAVVVIFLEFFAWGLLTTPMLTVLHQTFPQHTFLMNGLIHGVKGLLSFLSAP 90

Query:    69 LIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADV 128
             LIGALSD+WGRK FLL+TVF TC PIPLM +  WW+FA+IS+SGVFAVTFSV+FAYVAD+
Sbjct:    91 LIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISMSGVFAVTFSVIFAYVADI 150

Query:   129 TEEHERSLAYGLVSSE--TNQYSSPSL 153
             T+EHERS AYGLVS+    +  +SP++
Sbjct:   151 TQEHERSTAYGLVSATFAASLVTSPAI 177

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|A6QLP5 HIAT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 111/156 (71%), Positives = 132/156 (84%)

Query:     1 MIKNSPT-SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIK 59
             +IK+  T  GIG PSVYHA++VIFLEFFAWGLLT P + VL+ TFP HTFLMNGLI G+K
Sbjct:    22 IIKDGGTPQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVK 81

Query:    60 GFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFS 119
             G LSFLSAPLIGALSD+WGRK FLL+TVF TC PIPLM +  WW+FA+IS+SGVFAVTFS
Sbjct:    82 GLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISVSGVFAVTFS 141

Query:   120 VVFAYVADVTEEHERSLAYGLVSSE--TNQYSSPSL 153
             VVFAYVAD+T+EHERS+AYGLVS+    +  +SP++
Sbjct:   142 VVFAYVADITQEHERSMAYGLVSATFAASLVTSPAI 177

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q96MC6 HIAT1 "Hippocampus abundant transcript 1 protein" [Homo sapiens (taxid:9606)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 111/156 (71%), Positives = 132/156 (84%)

Query:     1 MIKNSPT-SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIK 59
             +IK+  T  GIG PSVYHA++VIFLEFFAWGLLT P + VL+ TFP HTFLMNGLI G+K
Sbjct:    22 IIKDGGTPQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVK 81

Query:    60 GFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFS 119
             G LSFLSAPLIGALSD+WGRK FLL+TVF TC PIPLM +  WW+FA+IS+SGVFAVTFS
Sbjct:    82 GLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISVSGVFAVTFS 141

Query:   120 VVFAYVADVTEEHERSLAYGLVSSE--TNQYSSPSL 153
             VVFAYVAD+T+EHERS+AYGLVS+    +  +SP++
Sbjct:   142 VVFAYVADITQEHERSMAYGLVSATFAASLVTSPAI 177

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1201609 Hiat1 "hippocampus abundant gene transcript 1" [Mus musculus (taxid:10090)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 111/156 (71%), Positives = 132/156 (84%)

Query:     1 MIKNSPT-SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIK 59
             +IK+  T  GIG PSVYHA++VIFLEFFAWGLLT P + VL+ TFP HTFLMNGLI G+K
Sbjct:    22 IIKDGGTPQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVK 81

Query:    60 GFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFS 119
             G LSFLSAPLIGALSD+WGRK FLL+TVF TC PIPLM +  WW+FA+IS+SGVFAVTFS
Sbjct:    82 GLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISVSGVFAVTFS 141

Query:   120 VVFAYVADVTEEHERSLAYGLVSSE--TNQYSSPSL 153
             VVFAYVAD+T+EHERS+AYGLVS+    +  +SP++
Sbjct:   142 VVFAYVADITQEHERSMAYGLVSATFAASLVTSPAI 177

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|1305281 Hiat1 "hippocampus abundant transcript 1" [Rattus norvegicus (taxid:10116)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 111/156 (71%), Positives = 132/156 (84%)

Query:     1 MIKNSPT-SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIK 59
             +IK+  T  GIG PSVYHA++VIFLEFFAWGLLT P + VL+ TFP HTFLMNGLI G+K
Sbjct:    22 IIKDGGTPQGIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVK 81

Query:    60 GFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFS 119
             G LSFLSAPLIGALSD+WGRK FLL+TVF TC PIPLM +  WW+FA+IS+SGVFAVTFS
Sbjct:    82 GLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISVSGVFAVTFS 141

Query:   120 VVFAYVADVTEEHERSLAYGLVSSE--TNQYSSPSL 153
             VVFAYVAD+T+EHERS+AYGLVS+    +  +SP++
Sbjct:   142 VVFAYVADITQEHERSMAYGLVSATFAASLVTSPAI 177

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1S559 LOC100622510 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 108/147 (73%), Positives = 127/147 (86%)

Query:     9 GIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAP 68
             GIG PSVYHA++VIFLEFFAWGLLT P + VL+ TFP HTFLMNGLI G+KG LSFLSAP
Sbjct:     3 GIGSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAP 62

Query:    69 LIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADV 128
             LIGALSD+WGRK FLL+TVF TC PIPLM +  WW+FA+IS+SGVFAVTFSVVFAYVAD+
Sbjct:    63 LIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISVSGVFAVTFSVVFAYVADI 122

Query:   129 TEEHERSLAYGLVSSE--TNQYSSPSL 153
             T+EHERS+AYGLVS+    +  +SP++
Sbjct:   123 TQEHERSMAYGLVSATFAASLVTSPAI 149

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

ZFIN|ZDB-GENE-040426-2935 hiat1b "hippocampus abundant transcript 1b" [Danio rerio (taxid:7955)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 106/144 (73%), Positives = 124/144 (86%)

Query:     1 MIKNSPT-SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIK 59
             +IK+  T  G G PSVYHA++VIFLEFFAWGLLT P +  L+ TFP HTFLMNGLI G+K
Sbjct:    20 IIKDGGTPQGFGSPSVYHAVIVIFLEFFAWGLLTAPTLGALDETFPKHTFLMNGLIQGVK 79

Query:    60 GFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFS 119
             G LSFLSAPLIGALSD+WGRK FLL+TVF TC PIPLM +  WW+FAMIS+SGVFAVTFS
Sbjct:    80 GLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAMISVSGVFAVTFS 139

Query:   120 VVFAYVADVTEEHERSLAYGLVSS 143
             V+FAYVAD+T+EHERS+AYG+VS+
Sbjct:   140 VIFAYVADITQEHERSMAYGMVSA 163

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PLI9 LOC476363 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 107/147 (72%), Positives = 124/147 (84%)

Query:     9 GIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAP 68
             G G PSVYHA +VIFLEFFAWGLLT P+++VL+ TFP HTFLMNGLI G+KG LSFLSAP
Sbjct:    39 GFGRPSVYHAAIVIFLEFFAWGLLTTPMLTVLHETFPQHTFLMNGLIQGVKGLLSFLSAP 98

Query:    69 LIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADV 128
             LIGALSD+WGRK FLL TVF TC PIPLM +  WW+FAMIS+SGVF+VTFSV+FAYVADV
Sbjct:    99 LIGALSDVWGRKPFLLGTVFFTCFPIPLMRISPWWYFAMISVSGVFSVTFSVIFAYVADV 158

Query:   129 TEEHERSLAYGLVSSE--TNQYSSPSL 153
             T+EHERS AYG VS+    +  SSP++
Sbjct:   159 TQEHERSTAYGWVSATFAASLVSSPAI 185

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96MC6	HIAT1_HUMAN	No assigned EC number	0.7569	0.8562	0.2918	yes	N/A
P70187	HIAT1_MOUSE	No assigned EC number	0.7569	0.8562	0.2918	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	167
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	5e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-05
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	6e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.001

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 50.5 bits (121), Expect = 5e-08
 Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 4/128 (3%)

Query: 19  LVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG 78
            +  FL      LL   +   L       +    GL++        L+ PL G LSD +G
Sbjct: 2   FLAAFLAGLGRSLLGPALPLYLAEDL-GISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 79  RKLFLLITVFVTCLP--IPLMTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERS 135
           R+  LLI + +  L   + L     W    +  + G+     F    A +AD     ER 
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERG 120

Query: 136 LAYGLVSS 143
            A GL+S+
Sbjct: 121 RALGLLSA 128

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 18  ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW 77
             +  FL     GLL+  +  +        +    GLI+        L + L G LSD +
Sbjct: 4   LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRF 61

Query: 78  GRKLFLLITVFVTCLPIPLMTLDT--WWFFAMISISGVF-AVTFSVVFAYVADVTEEHER 134
           GR+  LL+ + +  L   L+   +  W       + G+     +    A +A+     ER
Sbjct: 62  GRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKER 121

Query: 135 SLAYGLVSS 143
             A GL S+
Sbjct: 122 GRALGLFSA 130

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 53  GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDT--WWFFAMISI 110
           GL++        + +PL G L+D +GRK  LL+ +F+  L   +  L +          +
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 111 SGVFAVTFSV-VFAYVADVTEEHERSLAYGLVSS 143
            G  A    V   A +AD+    ER +A GL+S+
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSA 94

Length = 141

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 8/132 (6%)

Query: 18  ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW 77
            L+ + L  FA+  L   +           + L+ GL++G+ G L  +   L+G LSD  
Sbjct: 207 LLLALLLFGFAFFALLTYLPLYQEVL--GLSALLAGLLLGLAGLLGAIGRLLLGRLSDRL 264

Query: 78  GRK------LFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEE 131
           GR+      L LLI   +    + L     W   A++ +     + F  + A V+D+  +
Sbjct: 265 GRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPK 324

Query: 132 HERSLAYGLVSS 143
            ER  A GL ++
Sbjct: 325 EERGTASGLYNT 336

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 5/135 (3%)

Query: 13  PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGA 72
             +    +  FL  F +  L   +   L       +    GL++ + G    L A L G 
Sbjct: 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVL-GLSAAEAGLLLSLFGLGGILGALLGGL 233

Query: 73  LSDLWGRKLFLLITVFVT----CLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADV 128
           LSD  GR+  LL+   +      L + L         A++ +       F  +    +++
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASEL 293

Query: 129 TEEHERSLAYGLVSS 143
                R  A GL ++
Sbjct: 294 APPEARGTASGLFNT 308

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PRK12382	392	putative transporter; Provisional	99.79
PRK10054	395	putative transporter; Provisional	99.77
PRK05122	399	major facilitator superfamily transporter; Provisi	99.76
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.75
PRK09874	408	drug efflux system protein MdtG; Provisional	99.74
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.74
PRK03633	381	putative MFS family transporter protein; Provision	99.73
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.73
PRK03545	390	putative arabinose transporter; Provisional	99.73
KOG2615|consensus	451		99.72
PRK10504	471	putative transporter; Provisional	99.71
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.71
TIGR00891	405	2A0112 putative sialic acid transporter.	99.71
TIGR00900	365	2A0121 H+ Antiporter protein.	99.71
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.7
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.7
PRK12307	426	putative sialic acid transporter; Provisional	99.69
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.69
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.68
PRK10091	382	MFS transport protein AraJ; Provisional	99.68
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.68
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.67
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.67
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.67
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.66
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.65
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.64
PRK03699	394	putative transporter; Provisional	99.64
PRK10133	438	L-fucose transporter; Provisional	99.64
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.64
PRK10489	417	enterobactin exporter EntS; Provisional	99.64
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.64
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.64
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.63
PRK11663	434	regulatory protein UhpC; Provisional	99.63
TIGR00895	398	2A0115 benzoate transport.	99.63
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.63
PRK03893	496	putative sialic acid transporter; Provisional	99.63
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.62
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.62
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.62
KOG1330|consensus	493		99.61
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.61
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.6
PLN00028	476	nitrate transmembrane transporter; Provisional	99.6
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.6
PRK15075	434	citrate-proton symporter; Provisional	99.6
PRK11043	401	putative transporter; Provisional	99.6
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.59
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.59
PRK09705	393	cynX putative cyanate transporter; Provisional	99.59
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.59
TIGR00893	399	2A0114 d-galactonate transporter.	99.59
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.59
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.58
TIGR00900	365	2A0121 H+ Antiporter protein.	99.57
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.57
PRK10642	490	proline/glycine betaine transporter; Provisional	99.56
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.56
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.55
KOG3764|consensus	464		99.55
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.54
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.54
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.53
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.53
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.53
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.53
TIGR00893	399	2A0114 d-galactonate transporter.	99.52
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.52
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.52
TIGR00891	405	2A0112 putative sialic acid transporter.	99.51
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.51
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.51
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.5
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.5
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.5
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.5
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.49
PRK15011	393	sugar efflux transporter B; Provisional	99.49
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.49
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.49
TIGR00895	398	2A0115 benzoate transport.	99.48
PRK03633	381	putative MFS family transporter protein; Provision	99.48
PRK10504	471	putative transporter; Provisional	99.47
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.47
PRK09952	438	shikimate transporter; Provisional	99.47
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.47
PRK10642	490	proline/glycine betaine transporter; Provisional	99.47
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.46
PRK09952	438	shikimate transporter; Provisional	99.46
PRK03699	394	putative transporter; Provisional	99.46
PRK09528	420	lacY galactoside permease; Reviewed	99.46
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.46
PRK15011	393	sugar efflux transporter B; Provisional	99.46
TIGR00898	505	2A0119 cation transport protein.	99.46
PRK09705	393	cynX putative cyanate transporter; Provisional	99.46
PRK10489	417	enterobactin exporter EntS; Provisional	99.45
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.45
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.45
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.44
PRK03545	390	putative arabinose transporter; Provisional	99.43
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.42
PRK03893	496	putative sialic acid transporter; Provisional	99.42
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.42
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.42
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.41
PRK12382	392	putative transporter; Provisional	99.41
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.4
PRK09874	408	drug efflux system protein MdtG; Provisional	99.4
PRK15075	434	citrate-proton symporter; Provisional	99.4
KOG4686|consensus	459		99.39
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.39
TIGR00901	356	2A0125 AmpG-related permease.	99.39
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.39
PRK05122	399	major facilitator superfamily transporter; Provisi	99.38
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.38
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.37
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.37
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.37
PRK11902	402	ampG muropeptide transporter; Reviewed	99.36
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.36
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.36
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.35
KOG0255|consensus	521		99.35
PRK12307	426	putative sialic acid transporter; Provisional	99.35
PRK09528	420	lacY galactoside permease; Reviewed	99.35
PRK11663	434	regulatory protein UhpC; Provisional	99.35
PRK11010	491	ampG muropeptide transporter; Validated	99.35
TIGR00805	633	oat sodium-independent organic anion transporter.	99.34
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.33
KOG2532|consensus	466		99.33
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.32
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.32
PTZ00207	591	hypothetical protein; Provisional	99.32
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.31
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.31
KOG0254|consensus	513		99.3
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.3
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.3
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.28
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.28
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.27
TIGR00901	356	2A0125 AmpG-related permease.	99.27
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.26
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.26
KOG2325|consensus	488		99.25
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.24
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.24
PRK09848	448	glucuronide transporter; Provisional	99.24
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.24
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.23
PRK11010	491	ampG muropeptide transporter; Validated	99.22
PF13347	428	MFS_2: MFS/sugar transport protein	99.21
PRK10091	382	MFS transport protein AraJ; Provisional	99.2
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.2
KOG0569|consensus	485		99.19
TIGR00898	505	2A0119 cation transport protein.	99.19
PRK10133	438	L-fucose transporter; Provisional	99.18
PRK10054	395	putative transporter; Provisional	99.18
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.18
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.17
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.16
PRK09669	444	putative symporter YagG; Provisional	99.15
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.14
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.14
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.13
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.13
PRK10429	473	melibiose:sodium symporter; Provisional	99.13
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.12
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.1
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.1
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.09
PLN00028	476	nitrate transmembrane transporter; Provisional	99.08
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.07
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.07
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.06
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.05
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.03
KOG2504|consensus	509		99.01
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.0
PRK11902	402	ampG muropeptide transporter; Reviewed	99.0
PRK11043	401	putative transporter; Provisional	98.99
KOG2816|consensus	463		98.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.97
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.96
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.95
PRK10429	473	melibiose:sodium symporter; Provisional	98.95
PRK09669	444	putative symporter YagG; Provisional	98.94
KOG2533|consensus	495		98.93
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.93
PRK11462	460	putative transporter; Provisional	98.92
PF12832	77	MFS_1_like: MFS_1 like family	98.92
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.91
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.9
KOG3762|consensus	618		98.82
KOG0569|consensus	485		98.81
KOG0252|consensus	538		98.8
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.73
COG0477	338	ProP Permeases of the major facilitator superfamil	98.72
COG2211	467	MelB Na+/melibiose symporter and related transport	98.7
KOG0253|consensus	528		98.7
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.69
PRK11462	460	putative transporter; Provisional	98.65
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.64
PRK09848	448	glucuronide transporter; Provisional	98.61
KOG2532|consensus	466		98.57
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.57
KOG2504|consensus	509		98.56
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.55
PF13347	428	MFS_2: MFS/sugar transport protein	98.54
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.52
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.51
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.5
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.45
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.44
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.43
KOG2615|consensus	451		98.36
COG2211	467	MelB Na+/melibiose symporter and related transport	98.34
KOG0254|consensus	513		98.33
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.3
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.26
KOG0637|consensus	498		98.23
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.14
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.11
KOG3764|consensus	464		98.05
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.0
KOG0253|consensus	528		97.93
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.91
KOG2533|consensus	495		97.88
KOG2563|consensus	480		97.86
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.83
KOG2816|consensus	463		97.75
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.72
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.69
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.61
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.6
TIGR00805	633	oat sodium-independent organic anion transporter.	97.58
KOG0255|consensus	521		97.58
KOG3762|consensus	618		97.48
KOG1330|consensus	493		97.44
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.39
KOG4686|consensus	459		97.34
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.33
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.32
PTZ00207	591	hypothetical protein; Provisional	97.15
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.82
KOG0252|consensus	538		96.72
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.71
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.66
KOG3098|consensus	461		96.59
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.53
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.42
KOG3098|consensus	461		96.37
PRK03612	521	spermidine synthase; Provisional	96.32
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.2
KOG2563|consensus	480		96.15
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	94.89
KOG3626|consensus	735		93.27
KOG3574|consensus	510		93.03
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	92.88
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	92.77
KOG4332|consensus	454		92.54
KOG2601|consensus	503		92.42
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	92.24
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	90.57
KOG3626|consensus	735		90.53
KOG4332|consensus	454		89.95
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	89.33
KOG1479|consensus	406		87.84
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	87.21
KOG4830|consensus	412		86.85
KOG3810|consensus	433		85.67
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	83.54
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	81.37

>PRK12382 putative transporter; Provisional

Probab=99.79  E-value=1.3e-17  Score=124.52  Aligned_cols=155  Identities=15%  Similarity=0.160  Sum_probs=120.5

Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHH
Q psy16666          4 NSPTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFL   83 (167)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~   83 (167)
                      +++.+.+.++.++.+.+..++...+.+. ..|.+|.+.++..+.+..+.|++.+...++..++++++|+++||+|||+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l   84 (392)
T PRK12382          6 QTETRSSANFSLFRIAFAVFLTYMTVGL-PLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSA   84 (392)
T ss_pred             cCcCCCcccccHHHHHHHHHHHHHHHHH-HhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHH
Confidence            3445556667777777777777777656 689999887554445556779999999999999999999999999999999


Q ss_pred             HHHHHHHHhhHHh---h-------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhc
Q psy16666         84 LITVFVTCLPIPL---M-------TLDTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSS  150 (167)
Q Consensus        84 ~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~g  150 (167)
                      ..+.+...++...   .       ..+.+.+++.++++|++.+ ..+...+++.|..|+|+|++++++.+...+.  .+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g  164 (392)
T PRK12382         85 LQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAG  164 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHH
Confidence            8886554443221   1       1266778889999998654 5567788999999999999999998887776  889


Q ss_pred             cchhhHhhh
Q psy16666        151 PSLTPFYYY  159 (167)
Q Consensus       151 p~i~g~l~~  159 (167)
                      |.+++.+.+
T Consensus       165 ~~~~~~l~~  173 (392)
T PRK12382        165 APLGLLLHS  173 (392)
T ss_pred             HHHHHHHHh
Confidence            999888764

>PRK10054 putative transporter; Provisional

Probab=99.77  E-value=8.3e-17  Score=120.51  Aligned_cols=149  Identities=16%  Similarity=0.171  Sum_probs=118.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV   89 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (167)
                      +.+|+++.+.+..++...+.+. ..|++|.|+++..+.+..++|+..+...+...+.+++.|+++||+|||+++..+...
T Consensus         4 ~~~~~~~~l~~~~~~~~~g~~~-~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~   82 (395)
T PRK10054          4 SLRRSTSALLASSLLLTIGRGA-TLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITA   82 (395)
T ss_pred             CCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHH
Confidence            4455677777777787777766 699999998766555556779999999999999999999999999999999888766


Q ss_pred             HHhhHHhhhH--HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         90 TCLPIPLMTL--DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        90 ~~~~~~~~~~--~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      ..++...+..  +.+.+++.+.+.+.. +...+...++..|..|+++|+++.++.+...++  .+||.+++.+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~  157 (395)
T PRK10054         83 FASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM  157 (395)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665554443  566666666666653 445677889999999999999999999998888  889999998764

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.76  E-value=4.8e-17  Score=121.66  Aligned_cols=151  Identities=13%  Similarity=0.132  Sum_probs=119.4

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHH
Q psy16666          8 SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV   87 (167)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   87 (167)
                      ..+.++++..+++..++..++.+. ..+.+|.+.++..+.+..+.+++.+...++..+++++.|+++||+|||+++..+.
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~   88 (399)
T PRK05122         10 GLRLTLRIVSIVMFTFISYLTIGL-PLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGL   88 (399)
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHH
Confidence            445667777788888888888766 7999999876554545567799999999999999999999999999999999986


Q ss_pred             HHHHhhHHhhh----------HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666         88 FVTCLPIPLMT----------LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT  154 (167)
Q Consensus        88 ~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~  154 (167)
                      +...++.....          .+.+.+++.+++.|++. ...+...+++.|..|+|+|+++.++.......  .+||.++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~  168 (399)
T PRK05122         89 CGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLG  168 (399)
T ss_pred             HHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHH
Confidence            65554322211          13456788889999865 45577888899999999999999998777766  7889998


Q ss_pred             hHhhh
Q psy16666        155 PFYYY  159 (167)
Q Consensus       155 g~l~~  159 (167)
                      +.+.+
T Consensus       169 ~~l~~  173 (399)
T PRK05122        169 VLLYH  173 (399)
T ss_pred             HHHHH
Confidence            88765

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.75  E-value=1.4e-16  Score=119.17  Aligned_cols=146  Identities=14%  Similarity=0.103  Sum_probs=113.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      +|+++.+++..++..++... .....+...++.+.++ .+.+++.+.+.+...+..+++|+++||+|||+++..+..+..
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~-~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~   79 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNA-LLFAAIALLKELHYPD-WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKL   79 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHH
Confidence            34566777777777776544 3444555666766655 456999999999999999999999999999999999977666


Q ss_pred             hhHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         92 LPIPLMTLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ++......... .++.++++|++. ...|...+++.|++|+|+|++++++.+...+.  .+||.++|.+.+.
T Consensus        80 ~~~~~~~~~~~-~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~  150 (393)
T PRK11195         80 LGCLLMLFGIH-PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP  150 (393)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54444333111 256778899865 56789999999999999999999999988777  8999999988763

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.74  E-value=3.6e-16  Score=117.04  Aligned_cols=149  Identities=21%  Similarity=0.283  Sum_probs=117.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHH----HHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFL----MNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLI   85 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   85 (167)
                      ..++.+..+++..++...+... ..+++|.+.++.+.+..+    ..+++.+...+...++.++.|+++||+|||+.+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   89 (408)
T PRK09874         11 NWKRNLTVAWLGCFLTGAAFSL-VMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLR   89 (408)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHH
Confidence            3344556666666777777655 688999999887655322    34888899999999999999999999999999988


Q ss_pred             HHHHHHhhHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         86 TVFVTCLPIPLMT--LDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        86 ~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      +.....++.....  .+.+.+++.+++.|+.++..+...+++.|..|+++|+++.+..+....+  .++|.+++.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  167 (408)
T PRK09874         90 SALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD  167 (408)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8766666555443  3777888888888887666777888899999999999999999887777  788999888765

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.74  E-value=4.4e-16  Score=116.78  Aligned_cols=143  Identities=17%  Similarity=0.291  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH
Q psy16666         16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP   95 (167)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   95 (167)
                      +.++...++...+... ..|+++.++++..+.+..+.|++.+...+...+.+++.|+++||+|||+++..+.....+...
T Consensus        13 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFV-VFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHH
Confidence            5566667777777655 699999887665555667789999999999999999999999999999999998777777665


Q ss_pred             hhhH--HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         96 LMTL--DTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        96 ~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      ....  +.+.+.+.+++.|+..+ ..+...+++.|..|+|+|+++.++.+...++  .+||.++|.+.+
T Consensus        92 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~  160 (400)
T PRK11646         92 TMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ  160 (400)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5443  67778888889998654 5678889999999999999999999998888  999999998874

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.73  E-value=2.8e-16  Score=117.05  Aligned_cols=147  Identities=11%  Similarity=0.004  Sum_probs=121.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      .+++++.++...++.....+. ..+.+|.+.++.+.++ .++|++.+...++..+++++.|+++||+|||+++..+....
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~-~~~~lp~~~~~~~~s~-~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~   81 (381)
T PRK03633          4 YTRPVLLLLCGLLLLTLAIAV-LNTLVPLWLAQEHLPT-WQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIF   81 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            356677777777787777666 6899999999886654 57799999999999999999999999999999999987777


Q ss_pred             HhhHHhhh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         91 CLPIPLMT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        91 ~~~~~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      .++.....  .+.+.+++.+++.|++. ...+...+.+.|..++++|+++++..+...++  .+||.+++.+.+
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  155 (381)
T PRK03633         82 AAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST  155 (381)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            76655443  37888888999999865 45677777888889999999999999888887  888888887654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.73  E-value=8.4e-16  Score=115.07  Aligned_cols=127  Identities=8%  Similarity=0.108  Sum_probs=107.9

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      ..+.+|.+.++++.++. +.++..+...++..+++++.|+++||+|||+++..+..+..++......  +++.+++.+++
T Consensus        39 ~~~~l~~~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  117 (394)
T PRK10213         39 PVSLLTPMAQDLGISEG-VAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC  117 (394)
T ss_pred             HHhhHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence            45678888888776664 5599999999999999999999999999999999997777766555443  78899999999


Q ss_pred             HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .|+.. ...+...+++.|++|+|+|+++.++.....++  .+||.+++.+.+.
T Consensus       118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~  170 (394)
T PRK10213        118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL  170 (394)
T ss_pred             HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99864 56788999999999999999999999998888  8999999988653

>PRK03545 putative arabinose transporter; Provisional

Probab=99.73  E-value=5.2e-16  Score=115.88  Aligned_cols=127  Identities=13%  Similarity=0.080  Sum_probs=106.4

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  110 (167)
                      ..+.+|.+.++++.+.. +.++..+.+.++..+++++.|+++||+|||+++..+.....++.....  .+.+.+++.+++
T Consensus        28 ~~~~~~~l~~~~~~s~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~  106 (390)
T PRK03545         28 PVGLLSDIAQSFHMQTA-QVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIG  106 (390)
T ss_pred             HHcchHHHHhHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            45567888888776664 669999999999999999999999999999999999777766655544  488888999999


Q ss_pred             HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .|+.. ...+...+++.|.+|+|+|++++++.....++  .+||.+++.+.+.
T Consensus       107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~  159 (390)
T PRK03545        107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY  159 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99865 45678899999999999999999999888887  8899998877643

>KOG2615|consensus

Probab=99.72  E-value=3.8e-17  Score=118.32  Aligned_cols=112  Identities=29%  Similarity=0.406  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16666         48 TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVFAVTFSVVFAYV  125 (167)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~  125 (167)
                      .....|++-+.+++.+++.++.+|.++||+|||+++..|++..+++...++.  ++..++.+|++.|++.+......+++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAii  145 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAII  145 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHH
Confidence            4456699999999999999999999999999999999999988888777765  56566667999999999999999999


Q ss_pred             hccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        126 ADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       126 ~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      +|+.++++|+.+++..+..+++  ++||.+||++.+
T Consensus       146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            9999999999999999999999  999999999987

>PRK10504 putative transporter; Provisional

Probab=99.71  E-value=1.2e-15  Score=116.55  Aligned_cols=147  Identities=10%  Similarity=0.071  Sum_probs=117.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      ++.++.+....++....... ..+.+|.+.++.+.+.. +.+++.+.+.++..++.+++|+++||+|||+++..+..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~g~s~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTI-VNTALPSMAQSLGESPL-HMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            44556666666666666544 68889999988766654 55888899999999999999999999999999888766665


Q ss_pred             hhHHhhh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         92 LPIPLMT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        92 ~~~~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ++.....  .+.+.+++.++++|++. ...+...+++.|.+|+++|+++.++.+...++  .+||.++|.+.+.
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~  160 (471)
T PRK10504         87 LGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY  160 (471)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence            5444433  36778888899999865 56678899999999999999999999988777  8999999988753

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.71  E-value=2.4e-15  Score=110.82  Aligned_cols=149  Identities=15%  Similarity=0.078  Sum_probs=125.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV   89 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (167)
                      .....++.+.+..|...... ++..+.+|...+|++.+.. ..|...+.+.++..++.|+...+.||+.||++++....+
T Consensus        10 ~~~~~l~aLa~~~F~igttE-fv~~gLLp~iA~dl~vs~~-~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l   87 (394)
T COG2814          10 PMWLALLALALAAFAIGTTE-FVPVGLLPPIAADLGVSEG-AAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL   87 (394)
T ss_pred             cchHHHHHHHHHHHHHHhHH-HHHHhchHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            33444555555555555554 4478899999999998886 559999999999999999999999999999999999888


Q ss_pred             HHhhHHhhh--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         90 TCLPIPLMT--LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        90 ~~~~~~~~~--~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ..++....+  .|++.++++|++.|+. +.+++...+...|+.||++|++++++......+  .+|.++|.++-+.
T Consensus        88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~  163 (394)
T COG2814          88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL  163 (394)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            888776654  4999999999999984 678889999999999999999999999999888  9999999888654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.71  E-value=1.6e-15  Score=113.16  Aligned_cols=143  Identities=16%  Similarity=0.160  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH
Q psy16666         16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP   95 (167)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   95 (167)
                      ....+..+...+.... ..+..|.+.++.+.++. +.+++.+...++..++.++.|+++||+|||+++..+.++.+++..
T Consensus        15 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~s~~-~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~   92 (405)
T TIGR00891        15 SAAWLGWLLDAFDFFL-VALVLAEVAGEFGLTTV-DAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTL   92 (405)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            3334444444544433 56777877777766654 669999999999999999999999999999999988776666555


Q ss_pred             hhh--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         96 LMT--LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        96 ~~~--~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ...  .+++.+++.+++.|++ +...+...+++.|++|+++|+++.++.+....+  .++|.+++.+.+.
T Consensus        93 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~  162 (405)
T TIGR00891        93 ACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV  162 (405)
T ss_pred             HHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            543  3788888899999986 456788899999999999999999999988777  8888888877654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.71  E-value=9.7e-16  Score=112.67  Aligned_cols=141  Identities=13%  Similarity=0.199  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh-
Q psy16666         18 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-   96 (167)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-   96 (167)
                      ++...++..++.+. ..+.+|.|..+.+.++ .+.+++.+...++..+++++.|+++||+|||+++..+..+..+.... 
T Consensus         4 l~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAI-TQVALPLYVLAGTGSA-SVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            44556666666655 6788899988876665 46699999999999999999999999999999998886655443333 


Q ss_pred             -hhH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         97 -MTL-----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        97 -~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                       +..     +.+.+++.+++.|+.. ...+...+++.|+.|+++|+++.++.+....+  .+||.+++.+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~  154 (365)
T TIGR00900        82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT  154 (365)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             223     6778888899999865 46678899999999999999999999998888  8999999888653

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.70  E-value=1.6e-15  Score=112.61  Aligned_cols=137  Identities=16%  Similarity=0.160  Sum_probs=111.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--H
Q psy16666         22 IFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--L   99 (167)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~   99 (167)
                      .++...+... ..|.+|.+.++.+.++. +.+++.+...++..+++++.|+++||+|||+.+..+..+..++.....  .
T Consensus        14 ~~~~~~~~~~-~~~~~p~~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~   91 (385)
T TIGR00710        14 SILGPLGIDM-YLPAFPEIAADLSTPAS-IVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN   91 (385)
T ss_pred             HHHHHHHHHH-hcccHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence            3444444444 57888888888776664 669999999999999999999999999999999988776666555544  3


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        100 DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       100 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      +.+.+.+.+++.|++. ...+...+++.|.+|+++|+++.+..+....+  .+||.+++.+.+.
T Consensus        92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  155 (385)
T TIGR00710        92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW  155 (385)
T ss_pred             cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778888889999854 56678899999999999999999999988887  8899999877653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00897 2A0118 polyol permease family

Probab=99.70  E-value=1.2e-15  Score=114.45  Aligned_cols=155  Identities=12%  Similarity=0.065  Sum_probs=119.2

Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHH
Q psy16666          3 KNSPTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLF   82 (167)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~   82 (167)
                      -++.++-..++++....+..++...+.+. ..++++.+.++.+.++ .+.+++.+.+.++..++.++.|+++||+|||++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~   80 (402)
T TIGR00897         3 INNLQKIGIPLNLLWGYIGVVVFMTGDGL-EQGWLSPFLKALGLSP-QQSASAFTLYGIAAAISAWISGVVAEIIGPLKT   80 (402)
T ss_pred             cccHHHcCCCchhhHHHHHHHHHHHhhhh-HHHhHHHHHHHhCCCH-HHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            34444445566777777888888777665 6778888888876655 567999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHhh---h---HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccc
Q psy16666         83 LLITVFVTCLPIPLM---T---LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPS  152 (167)
Q Consensus        83 ~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~  152 (167)
                      +..+..+..++...+   .   .+.+.+++.+++.|++. ...+...+.+.|..|+|+|+++.|+.+...++   .+||.
T Consensus        81 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~  160 (402)
T TIGR00897        81 MMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSY  160 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988876666544322   1   25666777888888754 45566778889999999999999999988776   36888


Q ss_pred             hhhHhhh
Q psy16666        153 LTPFYYY  159 (167)
Q Consensus       153 i~g~l~~  159 (167)
                      +++.+.+
T Consensus       161 ~~~~l~~  167 (402)
T TIGR00897       161 YSSYAIP  167 (402)
T ss_pred             HHHhccc
Confidence            8877653

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.69  E-value=2.1e-15  Score=113.63  Aligned_cols=142  Identities=15%  Similarity=0.171  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhH
Q psy16666         15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPI   94 (167)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   94 (167)
                      +....+..+...+.... ..+.+|.+.++.+.++. +.+++.+...++..+++++.|+++||+|||+++..+.....++.
T Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~-~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~   97 (426)
T PRK12307         20 LFSAWLGYVFDGFDFML-IFYIMYLIKADLGLTDM-EGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGT   97 (426)
T ss_pred             HHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            33333334444444323 46667777777766654 56999999999999999999999999999999999977777765


Q ss_pred             Hhhh--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666         95 PLMT--LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus        95 ~~~~--~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      ....  .+.+.+.+.+++.|++ +...+....++.|.+|+|+|+++.++.+....+  .++|.+.+.+.
T Consensus        98 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~  166 (426)
T PRK12307         98 GLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA  166 (426)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence            5543  3788889999999986 457788899999999999999999998887777  66666655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.69  E-value=2.3e-15  Score=113.30  Aligned_cols=126  Identities=8%  Similarity=-0.029  Sum_probs=103.9

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      .....|...++++.+. .+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++......  +.+.+++.|++
T Consensus        27 ~~~~~~~l~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  105 (412)
T TIGR02332        27 IGFAGLTMGKDLGLSA-TMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRIL  105 (412)
T ss_pred             HHHHHHhhHhhcCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4555565556665554 56799999999999999999999999999999998887777766555443  78888999999


Q ss_pred             HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      .|++. ...+....++.|++|+++|+++.++++....+  .++|.+++++.+
T Consensus       106 ~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  157 (412)
T TIGR02332       106 VGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA  157 (412)
T ss_pred             HHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99865 56678888999999999999999999988877  888888887764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.68  E-value=4.4e-15  Score=111.30  Aligned_cols=125  Identities=16%  Similarity=0.060  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  110 (167)
                      .....|.+.++.+.++ .+.+++.+...++..++.++.|+++||+|||+++..+..+..+......  .+.+.+++.+++
T Consensus        34 ~~~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  112 (406)
T PRK11551         34 AGVAAPRMAQEFGLDV-AQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL  112 (406)
T ss_pred             HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            4556677777766555 5679999999999999999999999999999999988766655544433  377888888999


Q ss_pred             HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      .|+.. ...+...+++.|.+|+++|++++++.+....+  .++|.+++.+.
T Consensus       113 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  163 (406)
T PRK11551        113 TGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA  163 (406)
T ss_pred             HHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99864 56678899999999999999999999887776  67777765543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.68  E-value=4.8e-15  Score=110.49  Aligned_cols=145  Identities=15%  Similarity=0.075  Sum_probs=117.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL   92 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   92 (167)
                      +.++.+....+........ ..+.+|.+.++++.+.. +.++..+...++..++++++|+++||+|||+++..+..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~s~~-~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFG-IMGVLTELAHDVGISIP-AAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHH-HHhChHHHHHHcCCCHH-HHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence            4555566666666666444 68888999888776664 569999999999999999999999999999999999777777


Q ss_pred             hHHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         93 PIPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        93 ~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      +......  +.+.+++.+++.|++. ...+.....+.|+.|+++|+++++.......+  .+||.+++++.+
T Consensus        81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  152 (382)
T PRK10091         81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ  152 (382)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence            6655443  7888899999999864 45667778899999999999999998887777  788999888764

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.68  E-value=3.7e-15  Score=110.08  Aligned_cols=144  Identities=13%  Similarity=0.175  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhH
Q psy16666         15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPI   94 (167)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   94 (167)
                      ++..++..+........ ..+.+|.++++..+.+..+.+++.+...++..+++++.|+++||+|||+.+..+.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFA-FSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHH-hHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            34445555555555433 68888864444444445567999999999999999999999999999999999877777665


Q ss_pred             Hhhh--H-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         95 PLMT--L-DTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        95 ~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      ....  . +++.+++.+++.|+.++..+...+++.|++|+++|+++.++.....++  .+++.+++.+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~  151 (366)
T TIGR00886        82 LWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG  151 (366)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            5543  4 677788889999987666667788999999999999999998876666  666666665543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.67  E-value=3.3e-15  Score=109.45  Aligned_cols=138  Identities=24%  Similarity=0.326  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHhHHHHHHH-HHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh-
Q psy16666         20 VVIFLEFFAWGLLTMPIIS-VLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM-   97 (167)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-   97 (167)
                      +..++....... ..+.+| .+.++.+.+. .+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.... 
T Consensus         3 l~~~~~~~~~~~-~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    3 LAFFLSGFGFSI-ISPALPLYLAEELGLSP-SQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHH-HHHHHH-HHHCCSTTTS-HCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence            445556666545 577888 4555555455 456999999999999999999999999999999998877776663332 


Q ss_pred             -hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         98 -TLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        98 -~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                       +.+.+.+++.+++.|++. ...+...+++.|++|+|+|++++++.+...++  .++|.+++.+.+
T Consensus        81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  146 (352)
T PF07690_consen   81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS  146 (352)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh
Confidence             246678888999999964 67789999999999999999999999998888  899999998863

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.67  E-value=6.2e-15  Score=112.74  Aligned_cols=141  Identities=14%  Similarity=0.151  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh
Q psy16666         17 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL   96 (167)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   96 (167)
                      .+++..++....... ..+.+|.+.++.+.+. .+.+++.+.+.++..++.++.|+++||+|||+++..+..+..++...
T Consensus         6 ~~~~~~~~~~~~~~~-~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   83 (485)
T TIGR00711         6 VLMLGTFMAVLDSTI-VNVAIPTIAGDLGSSL-SQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL   83 (485)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCh-hhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            334444555555444 5778898888877665 45699999999999999999999999999999999987777666555


Q ss_pred             hh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         97 MT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        97 ~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      ..  .+.+.+++.++++|++. ...+...+++.|.+|+++|+++.++.+....+  .+||.+++++.+
T Consensus        84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  151 (485)
T TIGR00711        84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE  151 (485)
T ss_pred             HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence            44  37888889999999865 56678999999999999999999999888877  899999998765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.67  E-value=7.8e-15  Score=112.87  Aligned_cols=142  Identities=16%  Similarity=0.098  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh
Q psy16666         17 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL   96 (167)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   96 (167)
                      .+++..++....... ....+|.+.++++.+.. +.+++.+.+.++...+.+++|+++||+|||+++..+..+..++...
T Consensus        10 ~~~~~~~~~~ld~ti-v~~a~p~i~~~l~~s~~-~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~   87 (495)
T PRK14995         10 IIVLVYIPVAIDATV-LHVAAPTLSMTLGASGN-ELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLA   87 (495)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            333444444444434 57778999888776664 5599999999999999999999999999999999997777776555


Q ss_pred             hh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccc-cchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         97 MT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVT-EEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        97 ~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ..  .+.+.++++++++|++. ...+.....+.+.+ |+++|++++++.....++  .+||.++|++.+.
T Consensus        88 ~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~  157 (495)
T PRK14995         88 AAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH  157 (495)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            44  37888999999999865 45566677676655 789999999999998888  9999999988754

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.66  E-value=4.2e-15  Score=113.78  Aligned_cols=150  Identities=17%  Similarity=0.103  Sum_probs=120.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh-hcchHHHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTF--PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLIT   86 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~   86 (167)
                      ++.+.++.+....++..+++.. ..+++|.|+++.  .+.+..+.+.+.+.+.+...++++++|+++|| +|||+++..+
T Consensus         7 ~~p~~~~~l~~~~~~~~~~~~~-~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         7 GHPKPLFTLFFVELWERFSYYG-MQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             CCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            3445666666777777888755 699999998765  45555677999999999999999999999999 8999999999


Q ss_pred             HHHHHhhHHhhhH--HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchh---hHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666         87 VFVTCLPIPLMTL--DTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHE---RSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus        87 ~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      ..+..++...+..  +.+.+.+.+.+.|++.+ ..+...++++|.+|+++   |+++.++.+...++  .+||.+++++.
T Consensus        86 ~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~  165 (475)
T TIGR00924        86 GIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA  165 (475)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence            8888777666554  45666777788888654 56788899999998754   88899999998888  89999999886


Q ss_pred             hh
Q psy16666        159 YC  160 (167)
Q Consensus       159 ~~  160 (167)
                      +.
T Consensus       166 ~~  167 (475)
T TIGR00924       166 EN  167 (475)
T ss_pred             Hh
Confidence            53

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.65  E-value=6.7e-15  Score=109.31  Aligned_cols=126  Identities=16%  Similarity=0.081  Sum_probs=102.0

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh-hh-HHHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-MT-LDTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~  110 (167)
                      ..+.+|.+.++++.+.. +.|++.+.+.+++.+++++.|+++||+|||+++..+.......... .. .+.+.+++.|++
T Consensus        10 ~~~~lp~i~~~~~~s~~-~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l   88 (368)
T TIGR00903        10 FSPVLSLVAEDIDVSKE-ELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLL   88 (368)
T ss_pred             HHhhHHHHHHHhCcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            57888999988877664 6699999999999999999999999999998876554444333222 22 378889999999


Q ss_pred             HHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        111 SGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       111 ~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      .|++.+...+....++|++|+++|++++++.+....+  .++|.+++.+.+
T Consensus        89 ~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~  139 (368)
T TIGR00903        89 AALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT  139 (368)
T ss_pred             HHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987666666677779999999999999999998888  888888888764

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.64  E-value=2.2e-14  Score=108.09  Aligned_cols=127  Identities=16%  Similarity=0.095  Sum_probs=104.3

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      ..|.+|...++++.+.. +.++..+.+.++..++++++|+++||+|||+++..+..+..++......  +.+.+++++++
T Consensus        35 ~~p~l~~i~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  113 (413)
T PRK15403         35 IQPGIINVVRDFNADVS-LAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFI  113 (413)
T ss_pred             hccCHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            57777777777776654 5588999999999999999999999999999999887776666555443  78888999999


Q ss_pred             HHHHHHH-HHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        111 SGVFAVT-FSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       111 ~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      +|++.+. .+....++.|.+|+++|++++++.+....+  .+||.+++.+.+.
T Consensus       114 ~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~  166 (413)
T PRK15403        114 QGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF  166 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9986543 446678899999999999999999888877  8899999887643

>PRK03699 putative transporter; Provisional

Probab=99.64  E-value=1.9e-14  Score=107.75  Aligned_cols=147  Identities=13%  Similarity=0.024  Sum_probs=109.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      |++-.+..++..++....... ..+.+|.+.++++.++. +.+++.+...++..++.++.|++.||+|||+++..+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~~~~s~~-~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~   82 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIV-TGMVMGPIAEYFNLPVS-SMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM   82 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            333344444444444333222 46677888877766554 6699999999999999999999999999999998887766


Q ss_pred             HhhHHhhh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         91 CLPIPLMT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        91 ~~~~~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      .++.....  .+.+.+.+.+++.|++. ...+...+++.|.+|+++|+++.+..+.....  .++|.+.+.+..
T Consensus        83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  156 (394)
T PRK03699         83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA  156 (394)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66555444  37778888899999865 45567888999999999999999888776666  777887776653

>PRK10133 L-fucose transporter; Provisional

Probab=99.64  E-value=3.4e-14  Score=107.81  Aligned_cols=141  Identities=15%  Similarity=0.090  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH
Q psy16666         16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP   95 (167)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   95 (167)
                      ..+.+..++..+.. ....+.+|.+.++++.++ .+.++..+.+.++..+++++.|++.||+|||+++..+..+..++..
T Consensus        29 ~~~~~~~~~~~~~~-~~~~~~~p~i~~~~~~s~-~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~  106 (438)
T PRK10133         29 ALLCSLFFLWAVAN-NLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA  106 (438)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            33333444444443 335778888877777655 5679999999999999999999999999999999999887777665


Q ss_pred             hh-----hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666         96 LM-----TLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus        96 ~~-----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      .+     ..+++.++++++++|++. ...+..+.++.|..|+++|....+..+..+.+  .+||.+++.+.
T Consensus       107 l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            53     237788889999999964 56678888888987777777788888888877  88888877554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.64  E-value=2.8e-14  Score=106.59  Aligned_cols=142  Identities=15%  Similarity=0.142  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH
Q psy16666         16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP   95 (167)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   95 (167)
                      ...+...+....+... ..+.+|.+.++.+.++. +.++..+...++..++.++.|+++||+|||+.+..+.....++..
T Consensus         6 ~~~~~~~~~~~~~~~~-~~~~lp~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~   83 (392)
T PRK10473          6 LCSFALVLLYPAGIDM-YLVGLPRIAADLNASEA-QLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL   83 (392)
T ss_pred             HHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence            3344445555556545 57788988888776664 669999999999999999999999999999999988776666555


Q ss_pred             hhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         96 LMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        96 ~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      ....  +.+.+++.+++.|+.. ...+...+++.|.+|+++|+++.+..+....+  .++|.+++.+.+
T Consensus        84 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~  152 (392)
T PRK10473         84 LCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML  152 (392)
T ss_pred             HHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5443  6677788888888864 45678899999999999999999999887777  788888887653

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.64  E-value=2.9e-15  Score=112.84  Aligned_cols=149  Identities=17%  Similarity=0.203  Sum_probs=117.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV   89 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (167)
                      ++++.+..++...++..++.+. ..+.+|.+.++.+.++ .+.|++.+...++..+++++.|+++||+|||+++..+..+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~-~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~   91 (417)
T PRK10489         14 KTHPAFRAVFIARFISIFGLGL-LGVAVPVQIQMMTGST-LQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGT   91 (417)
T ss_pred             HhCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHH
Confidence            3466677777777777777666 6888899988877655 5679999999999999999999999999999988777554


Q ss_pred             HHhhHHhh-------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         90 TCLPIPLM-------TLDTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        90 ~~~~~~~~-------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      .+++....       ..+.+.+.+.+++.|++.+ ..+...+++.|..|+++|+++.++.+...++  .+||.++|.+.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~  171 (417)
T PRK10489         92 CGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA  171 (417)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence            44433221       1256777778888888654 5577889999999999999999998887777  899999998765


Q ss_pred             h
Q psy16666        160 C  160 (167)
Q Consensus       160 ~  160 (167)
                      .
T Consensus       172 ~  172 (417)
T PRK10489        172 A  172 (417)
T ss_pred             H
Confidence            3

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.64  E-value=9.7e-15  Score=106.59  Aligned_cols=141  Identities=23%  Similarity=0.302  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh
Q psy16666         18 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM   97 (167)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   97 (167)
                      .....+........ ..+..|.+.++.+.++ .+.++..+...++..++.++.|+++||+|||+.+..+.....+.....
T Consensus         4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~   81 (352)
T cd06174           4 LFLGFFLSGLDRGL-LSPALPLLAEDLGLSA-SQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL   81 (352)
T ss_pred             HHHHHHHHHHhhhh-hHhhHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence            33444555555544 5788888888876555 466999999999999999999999999999999988877777665554


Q ss_pred             hH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         98 TL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        98 ~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ..  +.+.+.+.+++.|++. ...+...+++.|.+|+|+|++..++.+...++  .++|.+++.+.+.
T Consensus        82 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  149 (352)
T cd06174          82 AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES  149 (352)
T ss_pred             HHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43  7788888899999854 56788999999999999999999999988888  8999999988764

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.64  E-value=3.4e-14  Score=113.16  Aligned_cols=125  Identities=17%  Similarity=0.117  Sum_probs=101.3

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  110 (167)
                      ....+|.+.++.+.+. .+.+++.+...++.+++.+++|+++||+|||++++++.++..++..+..  .+.+.+++++++
T Consensus       186 is~ilp~i~~~~gls~-~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l  264 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPD-SGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLL  264 (742)
T ss_pred             HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            4556677777776655 4569999999999999999999999999999999998766666544433  378888899999


Q ss_pred             HHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        111 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       111 ~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      .|++ ++..+...+++.|.+|+++|++.+++.+....+  ++++.++..+.
T Consensus       265 ~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il  315 (742)
T TIGR01299       265 SGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII  315 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9985 467789999999999999999999998887777  66776665543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.63  E-value=1.6e-14  Score=110.95  Aligned_cols=151  Identities=14%  Similarity=0.030  Sum_probs=117.7

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh-hcchHHHHHHH
Q psy16666          9 GIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITV   87 (167)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~   87 (167)
                      .++.+.++.++...+...+++.. ..++++.|+++..+.+..+.+++.+.+........+++|+++|| +|||+++..+.
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~-~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~   88 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYG-VQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA   88 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence            34566777777788888888766 68888888876555555666888888888888888999999999 99999999998


Q ss_pred             HHHHhhHHhhhH--H-HHHHHHHHHHHHHHHH-HHHHHHHHHhccccch--hhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         88 FVTCLPIPLMTL--D-TWWFFAMISISGVFAV-TFSVVFAYVADVTEEH--ERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        88 ~~~~~~~~~~~~--~-~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      ++..++......  + ...+++.+.+++++.+ ..+...+++.|.+|++  +|++++++++...++  .+||.++|++.+
T Consensus        89 ~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~  168 (489)
T PRK10207         89 IVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD  168 (489)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            887776655443  2 2334467788888654 5578889999999877  457789999999888  889999998875


Q ss_pred             h
Q psy16666        160 C  160 (167)
Q Consensus       160 ~  160 (167)
                      .
T Consensus       169 ~  169 (489)
T PRK10207        169 K  169 (489)
T ss_pred             h
Confidence            4

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.63  E-value=1.9e-14  Score=109.06  Aligned_cols=126  Identities=14%  Similarity=0.095  Sum_probs=105.1

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      ....+|.+.++.+.+. .+.+++.+...++..+++++.|+++||+|||+++.++.++..++......  +.+.+.+.+++
T Consensus        42 ~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  120 (434)
T PRK11663         42 FNAAMPEMLADLGLSR-SDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVL  120 (434)
T ss_pred             HHHhhHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4667888888876665 46699999999999999999999999999999999887777776665543  67777778888


Q ss_pred             HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      .|+.. ...+...+++.|++|+++|++++++.+...++  .++|.+++++.+
T Consensus       121 ~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  172 (434)
T PRK11663        121 NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL  172 (434)
T ss_pred             HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88754 45678889999999999999999999998888  888888888764

>TIGR00895 2A0115 benzoate transport

Probab=99.63  E-value=1.7e-14  Score=107.16  Aligned_cols=127  Identities=15%  Similarity=0.108  Sum_probs=103.2

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  110 (167)
                      ..+..|.+.++.+.++ .+.+++.+...++..++.++.|+++||+|||+.+..+..+..++.....  .+.+.+.+.+++
T Consensus        36 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (398)
T TIGR00895        36 MGFAAPAISAEWGLDP-VQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFL  114 (398)
T ss_pred             HHhhHHHHhhccCCCH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            3556677777766554 5669999999999999999999999999999999888766666554443  367777888888


Q ss_pred             HHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        111 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       111 ~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .|++ +...+...+++.|.+|+++|+++.++.+....+  .++|.+++.+.+.
T Consensus       115 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  167 (398)
T TIGR00895       115 AGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV  167 (398)
T ss_pred             HhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence            8885 456788999999999999999999999888877  8888888877643

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.63  E-value=1.6e-14  Score=108.35  Aligned_cols=127  Identities=17%  Similarity=0.065  Sum_probs=102.8

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  110 (167)
                      ..|.+|.+.++++.+. .+.++..+...++..++.++.|+++||+|||+++..+.....+......  .+.+.+++.+++
T Consensus        32 ~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  110 (406)
T PRK15402         32 IQPGMLAVVEDFNAGA-EWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFL  110 (406)
T ss_pred             HhcchHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            5777888888877665 4668999999999999999999999999999999888766666554433  367778888899


Q ss_pred             HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .|+.. ...+...+.+.|.+|+++|.+..++......+  .+||.+++.+.+.
T Consensus       111 ~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~  163 (406)
T PRK15402        111 QGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV  163 (406)
T ss_pred             HHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99865 44567888999999999999999988776665  8899988877653

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.63  E-value=5.2e-14  Score=108.10  Aligned_cols=141  Identities=18%  Similarity=0.248  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh
Q psy16666         17 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL   96 (167)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   96 (167)
                      .+.+..++..+.... ..+.+|.+.++++.+. .+.++..+...++..++.++.|+++||+|||+++..+.++..++...
T Consensus        24 ~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~  101 (496)
T PRK03893         24 AAWLGYLLDGFDFVL-ITLVLTEVQGEFGLTT-VQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLA  101 (496)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            333344444444433 5677788777776555 46689999999999999999999999999999999887766665555


Q ss_pred             hh--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         97 MT--LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        97 ~~--~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      ..  .+.+.+.+.+++.|+. ++..+...+++.|.+|+++|+++.+..+....+  .++|.+++.+.+
T Consensus       102 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  169 (496)
T PRK03893        102 CGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP  169 (496)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44  3778888899999985 456788899999999999999999999888777  788888876654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.62  E-value=4.6e-14  Score=105.48  Aligned_cols=134  Identities=18%  Similarity=0.113  Sum_probs=105.8

Q ss_pred             HHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HH
Q psy16666         24 LEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DT  101 (167)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~  101 (167)
                      +..+.... ..|.+|.+.++.+.++. +.+++.+...++..++++++|+++||+|||+.+..+.....++......  +.
T Consensus        19 ~~~~~~~~-~~p~~~~i~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~   96 (394)
T PRK11652         19 VGQMAQTI-YVPAIADMARDLNVREG-AVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSL   96 (394)
T ss_pred             HHHHHHHH-HhccHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH
Confidence            33434333 57778888888776664 5699999999999999999999999999999998887766665554433  67


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        102 WWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       102 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      +.+++.+++.|++. ...+....+..|.+++++|+++.+..+....+  .++|.+++.+.+
T Consensus        97 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  157 (394)
T PRK11652         97 TVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT  157 (394)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78888899999864 44566778889999999999999988877776  789998888764

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.62  E-value=2.7e-14  Score=109.18  Aligned_cols=125  Identities=15%  Similarity=0.090  Sum_probs=94.4

Q ss_pred             HHHHHHHHHhhC-------CCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH------
Q psy16666         33 TMPIISVLNRTF-------PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL------   99 (167)
Q Consensus        33 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------   99 (167)
                      ..+..|.+.+++       .+.+..+.+++.+...++..++++++|+++||+|||+++..+..+..++....+.      
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~  110 (479)
T PRK10077         31 ISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFT  110 (479)
T ss_pred             ehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            344555554443       1334456699999999999999999999999999999999986666554433221      


Q ss_pred             --------HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666        100 --------DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY  157 (167)
Q Consensus       100 --------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l  157 (167)
                              ..+.+++.|+++|++ ++..+...++++|++|+++|+++++..+.....  .+++.+++.+
T Consensus       111 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~  179 (479)
T PRK10077        111 SIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI  179 (479)
T ss_pred             cccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    235567899999986 467789999999999999999999998877666  5556555544

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.62  E-value=9e-14  Score=104.70  Aligned_cols=144  Identities=14%  Similarity=0.027  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhH
Q psy16666         15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPI   94 (167)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   94 (167)
                      +..++...+...+..+. ..+.+|.+.++++.+. .+.|++.+...++..+++++.|++.||+|||+++..+..+.+++.
T Consensus         5 ~~~~~~~f~~~G~~~~~-~~~l~~~~~~~~~~s~-~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDI-TNPMVPQFQQAFTLTA-FQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHh-HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            44555555666666545 5788999988777665 466999999999999999999999999999999999988777766


Q ss_pred             HhhhH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         95 PLMTL-----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        95 ~~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ..+..     +++.++..+++.|++. ...+..++++.+..|+++|++..++.+...++  .+||.+++.+...
T Consensus        83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~  156 (410)
T TIGR00885        83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS  156 (410)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55432     5777888889999864 56678889999999999999999999998888  8899998877643

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG1330|consensus

Probab=99.61  E-value=3e-15  Score=110.97  Aligned_cols=144  Identities=14%  Similarity=0.137  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh
Q psy16666         17 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL   96 (167)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   96 (167)
                      .+++...+..+--.. +-..++...+.++..+. ..|++.+.+.+.+++++|++|+++||++||+++.+|..+..++.+.
T Consensus        37 il~~vnlmny~Dr~~-iagv~~~v~~~fni~~s-~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~  114 (493)
T KOG1330|consen   37 ILCLVNLMNYADRYT-IAGVLKEVQTYFNISDS-ELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFA  114 (493)
T ss_pred             HHHHHHHHHHhhhhh-hhhhhHHHHHhcCCCch-hccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHH
Confidence            333334444433222 33344444455555555 4499999999999999999999999999999999998887776666


Q ss_pred             hh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhcc
Q psy16666         97 MT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCNN  162 (167)
Q Consensus        97 ~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~  162 (167)
                      -.  ..+|.+.++|.+.|++. ...+..+++++|.+|+++|++++++++.+..+  .+|-+.++.+.....
T Consensus       115 ~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  115 SGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             HHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            44  47899999999999974 67789999999999999999999999999888  777777776665544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.61  E-value=9.1e-14  Score=105.26  Aligned_cols=103  Identities=14%  Similarity=0.174  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--H--------HHHHHHHHHHHHHH-HHHHHHH
Q psy16666         53 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--D--------TWWFFAMISISGVF-AVTFSVV  121 (167)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~g~~-~~~~~~~  121 (167)
                      +...+...++..++++++|+++||+|||+++..+.....++....+.  +        ...+++.|+++|++ ++..+..
T Consensus        66 ~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~  145 (432)
T PRK10406         66 AGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTS  145 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhH
Confidence            34455556666699999999999999999999997777666555432  2        24578899999986 4678899


Q ss_pred             HHHHhccccchhhHHHHHHHHHHHhh--hhccchhh
Q psy16666        122 FAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTP  155 (167)
Q Consensus       122 ~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g  155 (167)
                      .+++.|++|+++|++..+..+.....  .+++.+..
T Consensus       146 ~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~  181 (432)
T PRK10406        146 ATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVV  181 (432)
T ss_pred             HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998887665555  44444433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.60  E-value=8.2e-14  Score=105.53  Aligned_cols=133  Identities=14%  Similarity=0.215  Sum_probs=101.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHh-hCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNR-TFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      |.++...+..++.+..+ .+..+..+.+.+ +++.+. .+.+++.+...++..+..++.|++.||+|.|+++.++.++..
T Consensus        34 r~l~~s~~~f~~~F~~w-~~~~~l~~~~~~~~~~ls~-~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWISVSCLLLAFCVW-MLFSAVTVNLNKIGFNFTT-DQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            44454444444555554 335666666665 455554 566999999999999999999999999999999988877666


Q ss_pred             hhHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666         92 LPIPLMT-------LDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus        92 ~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      +......       .+++.+++.+++.|+.++.++.....+++++|+++|++++|+.....++
T Consensus       112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~  174 (462)
T PRK15034        112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNL  174 (462)
T ss_pred             HHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhh
Confidence            6555443       3778899999999998778889999999999999999999998544433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.60  E-value=1.1e-13  Score=106.07  Aligned_cols=124  Identities=17%  Similarity=0.147  Sum_probs=95.3

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      ..+.+|.+.++++.+.. +.+++.+...++..+++++.|+++||+|||+++..+.+...+...+...  +.+.+++.+++
T Consensus        55 ~~~~~~~l~~~~gls~~-~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l  133 (476)
T PLN00028         55 AAPLLPIIRDNLNLTKS-DIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFF  133 (476)
T ss_pred             HHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            56777888888776654 5688888899999999999999999999999988887666665554443  67777788888


Q ss_pred             HHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666        111 SGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY  157 (167)
Q Consensus       111 ~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l  157 (167)
                      .|++.+.......+++|++|+++|+++.++.+...++  .+++.+.+.+
T Consensus       134 ~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i  182 (476)
T PLN00028        134 IGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV  182 (476)
T ss_pred             HHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8986554455667889999999999999998765555  4554444433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.60  E-value=1.3e-13  Score=106.24  Aligned_cols=151  Identities=15%  Similarity=0.210  Sum_probs=121.8

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHH
Q psy16666          8 SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV   87 (167)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   87 (167)
                      ...++|.+..++....+..++..+ ....++.+..+..+++ ...+++.+...+..++.++++|.++||++||++++.+-
T Consensus         5 aplr~~~Fr~lw~a~~iS~lG~~~-~~va~~wlv~~lt~S~-~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~   82 (524)
T PF05977_consen    5 APLRNRNFRRLWIAQLISNLGDWM-QTVALAWLVTQLTGSP-LMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQ   82 (524)
T ss_pred             ccccCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence            457888899999988888888755 5666677777766665 46699999999999999999999999999999999985


Q ss_pred             HHHHhhHHh---hhH----HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666         88 FVTCLPIPL---MTL----DTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY  157 (167)
Q Consensus        88 ~~~~~~~~~---~~~----~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l  157 (167)
                      +..++....   +..    +.|.+++..++.|++.. ..|..++.+.|+.|+++..+++++.+...++  .+||.++|.+
T Consensus        83 ~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~L  162 (524)
T PF05977_consen   83 LLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGIL  162 (524)
T ss_pred             HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            444332222   111    67778888888888664 5689999999999999999999999998888  9999999988


Q ss_pred             hhh
Q psy16666        158 YYC  160 (167)
Q Consensus       158 ~~~  160 (167)
                      ...
T Consensus       163 va~  165 (524)
T PF05977_consen  163 VAF  165 (524)
T ss_pred             HHH
Confidence            653

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15075 citrate-proton symporter; Provisional

Probab=99.60  E-value=6.8e-14  Score=106.02  Aligned_cols=141  Identities=18%  Similarity=0.167  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHH-----HHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         17 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIK-----GFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      ..++..++....... .....|...++++.++.++..+..+..     .+...+++++.|+++||+|||+++..+..+..
T Consensus        19 ~~~~~~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~   97 (434)
T PRK15075         19 RVTSGNFLEMFDFFL-FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMA   97 (434)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence            333444455544433 577778888887665544433332222     23335788999999999999999999977776


Q ss_pred             hhHHhhhH--HHH--------HHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666         92 LPIPLMTL--DTW--------WFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus        92 ~~~~~~~~--~~~--------~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      ++......  +.+        .+++.|+++|++. ...+....+++|++|+++|+++.++.+...+.  .+++.+++.+.
T Consensus        98 ~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~  177 (434)
T PRK15075         98 SGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLN  177 (434)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66555543  433        3577889999865 45677789999999999999999998887766  66777776653

>PRK11043 putative transporter; Provisional

Probab=99.60  E-value=1.5e-13  Score=102.98  Aligned_cols=136  Identities=17%  Similarity=0.131  Sum_probs=106.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--H
Q psy16666         23 FLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--D  100 (167)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~  100 (167)
                      .+..++... ..|.+|.+.++.+.++ .+.++..+...++..++++++|+++||+|||+++..+..+..++......  +
T Consensus        16 ~~~~~~~~~-~~p~~~~i~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   93 (401)
T PRK11043         16 MLGFLATDM-YLPAFKAIQADLQTSA-SAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES   93 (401)
T ss_pred             HHHHHHHHH-HHhhHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence            333444333 5777888787777665 46699999999999999999999999999999999887666665554433  6


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        101 TWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       101 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .+.+++.+++.|++. ...+...+++.|.+|++++++..+..+....+  .++|.+++.+.+.
T Consensus        94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~  156 (401)
T PRK11043         94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH  156 (401)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            778888889988754 44566788999999999999988888776666  7899999887653

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.59  E-value=5.5e-14  Score=104.32  Aligned_cols=127  Identities=17%  Similarity=0.158  Sum_probs=106.5

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      ..|.+|.+.++.+.++ .+.+++.+...++..++.+++|+++||+|||+++..+..+..+.......  +.+.+.+.+++
T Consensus        10 ~~p~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l   88 (377)
T PRK11102         10 YLPALPVIAADFGVSA-GSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFL   88 (377)
T ss_pred             HhccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            5788999998876655 46699999999999999999999999999999999987777666555443  67778888899


Q ss_pred             HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .|++. ...+...+++.|.+|+|+|+++.++.+....+  .++|.+++.+.+.
T Consensus        89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  141 (377)
T PRK11102         89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW  141 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99865 55678889999999999999999999888777  8889888877653

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.59  E-value=1.9e-13  Score=102.91  Aligned_cols=121  Identities=12%  Similarity=0.063  Sum_probs=101.4

Q ss_pred             HHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHHH
Q psy16666         38 SVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVFA  115 (167)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~  115 (167)
                      |.+.++.+.+..+..|.+.+.+..++.+..++.|+++||+|.|+++..+.+...+...+...  +.+.+.+.+++.|++.
T Consensus        50 p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaE  129 (511)
T TIGR00806        50 PYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTM  129 (511)
T ss_pred             HHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445556555542799999999999999999999999999999999998887776666554  7888999999999976


Q ss_pred             HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        116 VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      +.......++.+++|+++|+++.++.+++..+  ++++++++++.
T Consensus       130 A~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~  174 (511)
T TIGR00806       130 AARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV  174 (511)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54449999999999999999999999999888  88888888743

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.59  E-value=7.2e-14  Score=104.63  Aligned_cols=125  Identities=13%  Similarity=0.080  Sum_probs=104.1

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      ..+.+|...++++.++. +.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++......  +++.+++.|++
T Consensus        28 ~~~~lp~i~~~~~~s~~-~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l  106 (393)
T PRK09705         28 VGPLLPQLRQASGMSFS-VAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALL  106 (393)
T ss_pred             cchhHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence            47788888888877665 5699999999999999999999999999999999998888887776554  78888999999


Q ss_pred             HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      +|++. ...+....++.|.+| ++|+++++.+......  .+|+.+++.+.+
T Consensus       107 ~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~  157 (393)
T PRK09705        107 GGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQ  157 (393)
T ss_pred             HHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99965 455677888899886 7799999998877666  777777776654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.59  E-value=9.1e-14  Score=106.20  Aligned_cols=149  Identities=11%  Similarity=0.106  Sum_probs=112.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-cchHHHHHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-GRKLFLLITVF   88 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   88 (167)
                      ++.+.++.++...+...+.+.. ...++|.|+++..+.+..+.+.+.+.+.....++.+++|+++||+ |||+++..+.+
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg-~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~i   84 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYG-MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGAL   84 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence            3666777777777777777655 588899998776555666778888999999999999999999999 99999999877


Q ss_pred             HHHhhHHhhhH---HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccch--hhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         89 VTCLPIPLMTL---DTWWFFAMISISGVFAV-TFSVVFAYVADVTEEH--ERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        89 ~~~~~~~~~~~---~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      +..++...+..   +.....+...+..++.+ ..+...++++|.+|++  +|.++.++.+...++  .++|.+.|++.+
T Consensus        85 l~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~  163 (493)
T PRK15462         85 LMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE  163 (493)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh
Confidence            77776555443   11223333333333333 3466788999999875  699999999998888  899999998864

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.59  E-value=3e-14  Score=105.44  Aligned_cols=126  Identities=13%  Similarity=0.087  Sum_probs=103.7

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      .....|.+.++.+.++ .+.+++.+...++..++.++.|+++||+|||+++..+.++..++......  +.+.+.+.+++
T Consensus        13 ~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   91 (399)
T TIGR00893        13 LSFAAPMLQEDLGLSA-AQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVL   91 (399)
T ss_pred             hhHhHHHHHHhhCCCh-hhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence            3455566666666555 46699999999999999999999999999999998887766665555443  78888899999


Q ss_pred             HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      .|++. ...+...+++.|.+|+|+|+++.++.+...++  .++|.+++.+.+
T Consensus        92 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  143 (399)
T TIGR00893        92 LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI  143 (399)
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            99864 56678999999999999999999999988888  888888887654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.59  E-value=3.8e-15  Score=113.81  Aligned_cols=124  Identities=15%  Similarity=0.093  Sum_probs=98.1

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh-------HHHHHHHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT-------LDTWWFFA  106 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~  106 (167)
                      ....|.+.++++.++. +.|++.+.+.+++.+++++.|+++||+|||+++..+.+..++....++       .+.+.+++
T Consensus        49 ~~~~~~i~~~~~~s~~-~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  127 (467)
T PRK09556         49 KAAQNDMISTYGLSTT-ELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIA  127 (467)
T ss_pred             hhhhHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            4567888888776665 569999999999999999999999999999998887665554433322       37788888


Q ss_pred             HHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        107 MISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       107 ~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      .|++.|++. ...+...++++|++|+++|++++|+.+...++  ++++.+..++.
T Consensus       128 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~  182 (467)
T PRK09556        128 LWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA  182 (467)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence            999999864 45678889999999999999999998877766  55555554443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.58  E-value=4.8e-13  Score=99.81  Aligned_cols=148  Identities=15%  Similarity=0.092  Sum_probs=117.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      ++|+++...+..++....... ...+.|.|.++.+. +..++|...+...+...+..+..+++.||+|+|+.+.++.+..
T Consensus       203 ~~~~~~~~l~~~~l~~~~~~~-~~~~~~~~l~~~g~-s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~  280 (382)
T TIGR00902       203 KNPMNLRFLAAVCLIQGAHAA-YYGFSAIYWQAAGI-SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIAC  280 (382)
T ss_pred             cChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHH
Confidence            456666666666666666545 57788999988554 4457799999999999999999999999999999999888887


Q ss_pred             HhhHHhhhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHH-HHhh--hhccchhhHhhhhc
Q psy16666         91 CLPIPLMTL--DTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSS-ETNQ--YSSPSLTPFYYYCN  161 (167)
Q Consensus        91 ~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~--~~gp~i~g~l~~~~  161 (167)
                      .+....+..  +.+.++...++.|+ .+...+....++.+. |+++|++++++++. ..++  .+||.++|++.+..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~  356 (382)
T TIGR00902       281 VGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL  356 (382)
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            776666543  66777778899998 456777888899988 99999999999874 4455  88999999998764

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.57  E-value=4.2e-13  Score=98.66  Aligned_cols=149  Identities=15%  Similarity=0.110  Sum_probs=110.7

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      ++.++......++.............|.+.++..+.+..+.+.......++..++.+..+++.||++||+.+..+.....
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  288 (365)
T TIGR00900       209 NPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIG  288 (365)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence            44455555544444444333223677888877545555677999999999999999999999999999998887755555


Q ss_pred             hhHHhhhH--H-HHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         92 LPIPLMTL--D-TWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        92 ~~~~~~~~--~-~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      +.......  + .+...+..++.|++. ...+...+++.|..|+++|+++.++.+....+  .++|.++|.+.+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       289 LAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54444332  2 555666677778754 56678889999999999999999999998888  8999999998764

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.57  E-value=2.3e-13  Score=100.79  Aligned_cols=140  Identities=16%  Similarity=0.224  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHH-HHHHHHhhHHhhh
Q psy16666         20 VVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLI-TVFVTCLPIPLMT   98 (167)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~~~   98 (167)
                      +..++..++.+. ..|.+|.+.++..+.+..+.|++.+...+...+.+++.|+++||+|||+.++. +.....+......
T Consensus         4 ~~~~~~~~~~~~-~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         4 LVAFLTGIAGAL-QFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHH-HhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence            345666666666 68999998765555555677999999999999999999999999998887554 4444444333333


Q ss_pred             --HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHH--HHHHHHHHhh--hhccchhhHhhhh
Q psy16666         99 --LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLA--YGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        99 --~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                        .+++.+++.+++.+.. +...|...++..|..|+++|+++  .+......++  .+||.+++.+.+.
T Consensus        83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~  151 (375)
T TIGR00899        83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG  151 (375)
T ss_pred             hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh
Confidence              3667677777777654 45667788888998887777654  4666666666  8899998888653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.56  E-value=2.3e-13  Score=104.60  Aligned_cols=136  Identities=15%  Similarity=0.196  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhhCCCch-H--HHHHH--HHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh
Q psy16666         18 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHT-F--LMNGL--IMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL   92 (167)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~--~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   92 (167)
                      ..+..++..+-... .....|...+++.... .  ...+.  ..+...++..+++++.|+++||+|||+++..+.++..+
T Consensus        21 ~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i   99 (490)
T PRK10642         21 ASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSI   99 (490)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            33444555544333 3444555555553221 1  11122  24677788999999999999999999999999888777


Q ss_pred             hHHhhhH--HHH--------HHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666         93 PIPLMTL--DTW--------WFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT  154 (167)
Q Consensus        93 ~~~~~~~--~~~--------~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~  154 (167)
                      +....+.  +++        .++++|+++|++ ++..+...++++|++|+++|++..++......+  .+|+.+.
T Consensus       100 ~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642        100 STFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            6666554  433        377889999985 567789999999999999999999887766555  4444443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.56  E-value=2.2e-13  Score=113.83  Aligned_cols=152  Identities=15%  Similarity=0.168  Sum_probs=111.1

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCc-hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHH
Q psy16666          9 GIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDH-TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV   87 (167)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   87 (167)
                      ..+++.+..+++..++..++.........+....++... +....+++.+++.++..++++++|+++||+|||++++.+.
T Consensus         5 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~   84 (1146)
T PRK08633          5 LLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVK   84 (1146)
T ss_pred             hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHH
Confidence            455666666666666655554332233333333333322 3344588889999999999999999999999999998876


Q ss_pred             HHHHhhHHhh-----hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         88 FVTCLPIPLM-----TLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        88 ~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      ++..+...+.     ..+.+.+++.+++.|+.. ...+...+++.|++|+++|++++++.....++  ++||.+++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633         85 LFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5443332221     126778888999999865 45678899999999999999999999998888  899999998876


Q ss_pred             h
Q psy16666        160 C  160 (167)
Q Consensus       160 ~  160 (167)
                      .
T Consensus       165 ~  165 (1146)
T PRK08633        165 S  165 (1146)
T ss_pred             h
Confidence            4

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.55  E-value=5.2e-13  Score=103.00  Aligned_cols=112  Identities=11%  Similarity=0.043  Sum_probs=91.6

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--H------HHHHHHHHHHHHHH-HHH
Q psy16666         47 HTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--D------TWWFFAMISISGVF-AVT  117 (167)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~g~~-~~~  117 (167)
                      .+..+.+++.+...++..++.+++|+++||+|||+++..+.++..++......  +      .+.+++.|++.|++ ++.
T Consensus        53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~  132 (502)
T TIGR00887        53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGD  132 (502)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhh
Confidence            34445588999999999999999999999999999998887666665444332  2      56788999999986 456


Q ss_pred             HHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        118 FSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       118 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      .+....+++|.+|+++|+++.++.+....+  .+++.++..+.
T Consensus       133 ~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~  175 (502)
T TIGR00887       133 YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL  175 (502)
T ss_pred             hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999888777  77777776554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG3764|consensus

Probab=99.55  E-value=5.2e-14  Score=102.79  Aligned_cols=116  Identities=23%  Similarity=0.310  Sum_probs=102.5

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHHHH-HHHHHHH
Q psy16666         47 HTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVFAV-TFSVVFA  123 (167)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~  123 (167)
                      .+..++|++++...+.+.+.+|+.|.+.||+|+|..+++++..+..+..++++  +++.++++|.++|++++ ......+
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla  182 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA  182 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence            34457799999999999999999999999999999999998888888777776  88999999999999764 5568899


Q ss_pred             HHhccccchh-hHHHHHHHHHHHhh--hhccchhhHhhhhcc
Q psy16666        124 YVADVTEEHE-RSLAYGLVSSETNQ--YSSPSLTPFYYYCNN  162 (167)
Q Consensus       124 ~~~~~~~~~~-r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~  162 (167)
                      +++|.+|+|+ |++++|..-.+.++  .+||.+||.+++...
T Consensus       183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G  224 (464)
T KOG3764|consen  183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG  224 (464)
T ss_pred             HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC
Confidence            9999999655 79999999988888  999999999998643

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.54  E-value=6.7e-13  Score=99.54  Aligned_cols=127  Identities=16%  Similarity=0.060  Sum_probs=98.6

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      ...++|.+.++.+.++ .+.+...+...++..++.+..|++.||+|||+.+..+.....+....+..  +.+.+.+..++
T Consensus       239 ~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK11551        239 LLNWLPSLLVGQGLSR-SQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA  317 (406)
T ss_pred             HHHHHHHHHHhCCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            4567788888765444 56688999999999999999999999999999887765544444333332  44555555566


Q ss_pred             HHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        111 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       111 ~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .|+. .+..+...++..|.+|+++|+++.|+.+....+  .+||.++|.+.+.
T Consensus       318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~  370 (406)
T PRK11551        318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL  370 (406)
T ss_pred             HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc
Confidence            6664 456678889999999999999999999998888  8999999988764

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.54  E-value=1.1e-12  Score=100.43  Aligned_cols=147  Identities=9%  Similarity=-0.027  Sum_probs=100.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      ++.++...+..++....... ...++|.|+++..+.+..+.++..+...++..++.+.+|+++||+|||+.+........
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~  335 (467)
T PRK09556        257 NPVIWLLCFANIFLYIVRIG-IDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALAL  335 (467)
T ss_pred             ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence            34455555544444444333 46788999877666666677888888999999999999999999998887655433222


Q ss_pred             hhH--HhhhH--HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhh
Q psy16666         92 LPI--PLMTL--DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYY  159 (167)
Q Consensus        92 ~~~--~~~~~--~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~  159 (167)
                      +..  ..+..  +.+...+..++.|.. .+........+.|..|+++|+++.|+.+...++   +++|.+.|.+.+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        336 IIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            221  11221  344444555556643 233333446777999999999999999988774   789999999987

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.53  E-value=4e-13  Score=99.13  Aligned_cols=113  Identities=12%  Similarity=0.155  Sum_probs=91.3

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      ..+..|.+.++.+.++ .+.+++.+...++..+++++.|+++||+|||+++..+..+..++......  +.+.+++.+.+
T Consensus        22 ~~~~~~~~~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (377)
T TIGR00890        22 WTLLAPPLGRYFGVGV-TAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGL  100 (377)
T ss_pred             hhhHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667787877776665 46699999999999999999999999999999999987777766655443  77888888888


Q ss_pred             HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666        111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      .|++. ...+.....+.|++| |+|+++.++.....++
T Consensus       101 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  137 (377)
T TIGR00890       101 ASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGL  137 (377)
T ss_pred             HhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcch
Confidence            88865 455667777888886 5699999998887766

>TIGR00889 2A0110 nucleoside transporter

Probab=99.53  E-value=7.2e-13  Score=100.07  Aligned_cols=148  Identities=13%  Similarity=0.035  Sum_probs=106.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHH
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDH-------TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLI   85 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   85 (167)
                      ++++...+..++....... ...+.+.+.++.+.+       .....+...+...+...++.++.|+++||+|+|+++..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~  286 (418)
T TIGR00889       208 KRMAIFFFFSMLLGAPLQI-TNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLL  286 (418)
T ss_pred             CCeeeHHHHHHHHHhHHHH-HHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            3344444444554444333 456667777765532       22456888899999999999999999999999999999


Q ss_pred             HHHHHHhhHHhhhH------HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHH-HHHhh--hhccchhh
Q psy16666         86 TVFVTCLPIPLMTL------DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVS-SETNQ--YSSPSLTP  155 (167)
Q Consensus        86 ~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~--~~gp~i~g  155 (167)
                      +.++..+....+..      +.+.+++..++.|+.. ...+....++.|.+|+++|++++|+.+ ...++  ++||.++|
T Consensus       287 ~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G  366 (418)
T TIGR00889       287 SLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSG  366 (418)
T ss_pred             HHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            87777665444332      1234455667777754 455677889999999999999999997 45555  89999999


Q ss_pred             Hhhhhc
Q psy16666        156 FYYYCN  161 (167)
Q Consensus       156 ~l~~~~  161 (167)
                      .+.+..
T Consensus       367 ~l~~~~  372 (418)
T TIGR00889       367 VMVEKM  372 (418)
T ss_pred             HHHHHh
Confidence            998753

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.53  E-value=4e-13  Score=101.96  Aligned_cols=106  Identities=22%  Similarity=0.229  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-----HHHHHHHHHHHHHHHH-HHHHHHH
Q psy16666         49 FLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-----DTWWFFAMISISGVFA-VTFSVVF  122 (167)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~  122 (167)
                      ..+.+++.+...++..++++++|+++||+|||+++..+.++..++..+...     +.+.+++.+++.|++. ...+...
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  149 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVP  149 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHH
Confidence            456699999999999999999999999999999998887766665544421     4457888999999864 5667889


Q ss_pred             HHHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666        123 AYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT  154 (167)
Q Consensus       123 ~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~  154 (167)
                      +++.|.+|+++|+++.++.+....+  .++|.++
T Consensus       150 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       150 MYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888777  7777766

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.53  E-value=1.1e-12  Score=104.69  Aligned_cols=107  Identities=10%  Similarity=0.156  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHhcccc
Q psy16666         54 LIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGV-FAVTFSVVFAYVADVTE  130 (167)
Q Consensus        54 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~  130 (167)
                      ....+..++.+++.++.|+++||+|||+++..+.++.+++..++..  +.+.+++.+++.++ .++..+...++++|++|
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P  678 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP  678 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3455677889999999999999999999999887777776655544  44455555556665 45677888999999999


Q ss_pred             chhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        131 EHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       131 ~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      +++|++++|+.+....+  ++||.+++.+...
T Consensus       679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~  710 (742)
T TIGR01299       679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGI  710 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999888  9999999877653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.52  E-value=6.7e-13  Score=98.27  Aligned_cols=149  Identities=17%  Similarity=0.169  Sum_probs=102.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchH--HHHHH--
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKL--FLLIT--   86 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~~--   86 (167)
                      ++++++..++..++....... ...+.|.|.++..+.+..+.++..+...+...++.+..|+++||++||+  .....  
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  291 (399)
T TIGR00893       213 KDRRVWGLALGQFLVNIGLGF-FLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKT  291 (399)
T ss_pred             cCHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Confidence            345566666666666555544 5778898887766666667788999999999999999999999999886  11111  


Q ss_pred             ----HHHHHhhHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666         87 ----VFVTCLPIPLMTL--DTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus        87 ----~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                          .....+.......  +.+.......+.+...+..+...+++.|..|+++|+++.++.+...++  .++|.+.|.+.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~  371 (399)
T TIGR00893       292 AIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIA  371 (399)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhc
Confidence                1111111111111  222222223333334456788999999999999999999999998888  89999999887


Q ss_pred             hh
Q psy16666        159 YC  160 (167)
Q Consensus       159 ~~  160 (167)
                      +.
T Consensus       372 ~~  373 (399)
T TIGR00893       372 AT  373 (399)
T ss_pred             cC
Confidence            64

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.52  E-value=1.5e-12  Score=95.08  Aligned_cols=145  Identities=20%  Similarity=0.284  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchH-HHHHHHHHHHhh
Q psy16666         15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKL-FLLITVFVTCLP   93 (167)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~   93 (167)
                      ++...+..+........ ...+.|.+.++..+.+..+.+...+...++..++.++.+++.||+|||+ .+..+.....++
T Consensus       177 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  255 (352)
T cd06174         177 LLLLALAFFLLSFGYYG-LLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALG  255 (352)
T ss_pred             HHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            33444444444444434 5777888888764555567799999999999999999999999999999 888887766666


Q ss_pred             HHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         94 IPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        94 ~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ......  +.+...+..++.|++. ...+...+++.|..|+++|++..+..+...++  .++|.+.|.+.+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~  327 (352)
T cd06174         256 LLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT  327 (352)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            555543  4566677777888754 56789999999999999999999999998888  8999999988753

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.52  E-value=9.4e-13  Score=97.14  Aligned_cols=147  Identities=16%  Similarity=0.193  Sum_probs=102.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      +++++......+........ .....+.+.++.+.++ .+.+...+...+...++.+..|+++||+|||+.+..+.....
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~  281 (377)
T TIGR00890       204 TPQFWVLYLSFFLNAVSGLL-LIGLYKPYGQSLGLSD-GFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISA  281 (377)
T ss_pred             CccHHHHHHHHHHHhHHHHH-HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            34444444444444333322 3455666766665444 456888899999999999999999999999999888766666


Q ss_pred             hhHHhhhH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         92 LPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        92 ~~~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ++......    +...++...++.++. +...+...+++.|.+|+++|+++.|+.+....+  .++|.+.|.+.+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~  357 (377)
T TIGR00890       282 VGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE  357 (377)
T ss_pred             HHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            65544332    122233334455553 344556778899999999999999999988888  8999999988754

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.51  E-value=1.2e-12  Score=97.63  Aligned_cols=129  Identities=10%  Similarity=0.088  Sum_probs=96.5

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhH-Hhhh--HHHHHHHHHHHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPI-PLMT--LDTWWFFAMISI  110 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~  110 (167)
                      ..++|.|.++..+.+..+.+.+.+...++..++.+..|+++||+|||+.+..+.....+.. ..+.  .+.+.+.+..++
T Consensus       258 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (405)
T TIGR00891       258 QDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFF  337 (405)
T ss_pred             hhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            5567877766555555677889999999999999999999999999998887755443222 2222  244444444455


Q ss_pred             HHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhcc
Q psy16666        111 SGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCNN  162 (167)
Q Consensus       111 ~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~  162 (167)
                      .+. ..+..+...+++.|..|+++|+++.|+.+...++  .++|.++|.+.+..+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            554 3455667788999999999999999999888877  999999999987543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.51  E-value=7.5e-14  Score=103.04  Aligned_cols=125  Identities=15%  Similarity=0.132  Sum_probs=100.1

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      ..+..|.+.++.+.+. .+.+++.+...++..++.++.|+++||+|||+++..+..+..++..+...  +.+.+++.+++
T Consensus        14 ~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (379)
T TIGR00881        14 FALAMPYLVEEIGLSK-TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWAL   92 (379)
T ss_pred             hhhhhHHHHHHhCCCH-hHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3555676666666555 46699999999999999999999999999999999987777666555443  77888888999


Q ss_pred             HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhcc-chhhHhh
Q psy16666        111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSP-SLTPFYY  158 (167)
Q Consensus       111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp-~i~g~l~  158 (167)
                      .|++. ...+...+++.|++|+++|+++.++.+....+  .++| .+++.+.
T Consensus        93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  144 (379)
T TIGR00881        93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA  144 (379)
T ss_pred             HHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH
Confidence            99864 46678899999999999999999998888777  7777 3554443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.51  E-value=3.3e-13  Score=99.20  Aligned_cols=146  Identities=17%  Similarity=0.323  Sum_probs=111.7

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHH
Q psy16666          8 SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV   87 (167)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   87 (167)
                      ++.++++++.-.+...+.+..+ .++.+..+.+.++++.++ .|.+++.+...+...+...+.|.+.||+|.|++...+.
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW-~l~s~l~~~i~~~~~LS~-~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~   86 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVW-TLFSPLGVFIKSDFGLSE-GQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSM   86 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHH-HHHHHHHhhhccccCCCH-HHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHH
Confidence            3344555555555555555555 435666666666666555 56699999999999999999999999999999999887


Q ss_pred             HHHHhhHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh------hhccchhhH
Q psy16666         88 FVTCLPIPLMTL-----DTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ------YSSPSLTPF  156 (167)
Q Consensus        88 ~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~------~~gp~i~g~  156 (167)
                      ++..+.......     ++|.++++.++.|+.++.+.....++++++|||++|.++|++. ..|+      .++|.+...
T Consensus        87 ~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~  165 (417)
T COG2223          87 LLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA  165 (417)
T ss_pred             HHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH
Confidence            777765555443     5678999999999999999999999999999999999999988 5555      556655443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.50  E-value=9.1e-13  Score=97.76  Aligned_cols=147  Identities=16%  Similarity=0.164  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH-hh
Q psy16666         15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC-LP   93 (167)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~-~~   93 (167)
                      ++......++....... ...++|.|.++..+.+..+.+.......+...++.++.|+++||+|||+.+.....+.. ..
T Consensus       221 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~  299 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYL-ITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLA  299 (394)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            34344444444444333 46778888866555555566888888999999999999999999999997765433222 22


Q ss_pred             HHh---hh--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHH-Hhh--hhccchhhHhhhhcc
Q psy16666         94 IPL---MT--LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSE-TNQ--YSSPSLTPFYYYCNN  162 (167)
Q Consensus        94 ~~~---~~--~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~--~~gp~i~g~l~~~~~  162 (167)
                      ...   +.  .+.+......++.++. +...+..++++.|.+|+++|+++.++.+.. ..+  .++|.++|.+.+..+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       300 VPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            111   11  1344455555666664 456778899999999999999999985443 334  689999999987543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.50  E-value=7.5e-13  Score=110.72  Aligned_cols=153  Identities=14%  Similarity=0.103  Sum_probs=108.4

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhHHH--HHHHHHH--hhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHH
Q psy16666          9 GIGEPSVYHALVVIFLEFFAWGLLTM--PIISVLN--RTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLL   84 (167)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~   84 (167)
                      ..+++++..++...++..++......  ..+..+.  .+.........++..+++.+...+.++++|+++||+|||+++.
T Consensus         7 l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~   86 (1140)
T PRK06814          7 LMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAK   86 (1140)
T ss_pred             hhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHH
Confidence            34556666666666666665433111  2222221  2223333455688888999999999999999999999999764


Q ss_pred             HH----HHHHHhhHHhhh-HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhH
Q psy16666         85 IT----VFVTCLPIPLMT-LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPF  156 (167)
Q Consensus        85 ~~----~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~  156 (167)
                      ..    ..........+. .+.+.++++++++|++. ...|...+++.|++|+++|++++|+.+...++  ++||+++|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~  166 (1140)
T PRK06814         87 ILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGL  166 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            32    111222222222 37888999999999975 46689999999999999999999999999998  999999999


Q ss_pred             hhhhc
Q psy16666        157 YYYCN  161 (167)
Q Consensus       157 l~~~~  161 (167)
                      +....
T Consensus       167 l~~~~  171 (1140)
T PRK06814        167 ATISG  171 (1140)
T ss_pred             HHhcc
Confidence            87643

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.50  E-value=1.4e-12  Score=100.50  Aligned_cols=148  Identities=14%  Similarity=0.068  Sum_probs=108.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh-hcchHHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITVFVT   90 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~   90 (167)
                      ++.++..+...+...+++.. ..++++.|+++..+.+..+.+...+.+........+++|+++|| +|||+++..+..+.
T Consensus        20 p~~~~~~~~~~~~~~~~~y~-~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~   98 (500)
T PRK09584         20 PKAFYLIFSIELWERFGYYG-LQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVL   98 (500)
T ss_pred             CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            34577777777888888655 57888999865555554555666666665555666789999999 59999999997777


Q ss_pred             HhhHHhhhH---HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchh--hHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         91 CLPIPLMTL---DTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHE--RSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        91 ~~~~~~~~~---~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .++...+..   +.+.+.+.+.+.|++.+ ..+...+++.|++|+++  |..+.++.+...++  .+||.++|++.+.
T Consensus        99 ~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~  176 (500)
T PRK09584         99 AIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK  176 (500)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            766555543   23445566777888665 45677889999998643  45678888888888  8899999988753

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.50  E-value=3.3e-12  Score=94.57  Aligned_cols=147  Identities=14%  Similarity=0.124  Sum_probs=100.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      +++++......++....... ....+|.+.++..+.+..+.+...........++.+..|++.||+|||+.+..+.....
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~  276 (375)
T TIGR00899       198 SRDTRLLFVACTLMWGCNIL-YIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGV  276 (375)
T ss_pred             CcchHHHHHHHHHHHHHHHH-HHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHH
Confidence            34444444444444333323 35566777765545555566888777777778888999999999999998887755544


Q ss_pred             hhHHhhh--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         92 LPIPLMT--LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        92 ~~~~~~~--~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      +......  .+.+......++.|++ +...+....+..|..|++ |+++.++++...++  .++|.++|.+.+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~  349 (375)
T TIGR00899       277 AFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAER  349 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4433322  2555555666777764 345567778889988764 67999999888777  8999999988764

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.49  E-value=7.7e-13  Score=100.78  Aligned_cols=111  Identities=14%  Similarity=0.102  Sum_probs=87.0

Q ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH------HHHHHHHHH
Q psy16666         35 PIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL------DTWWFFAMI  108 (167)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  108 (167)
                      ..+|.+.+ . +.+..+.+++.+...++..+++++.|+++||+|||+++..+..+.++....+..      +.+.+++.+
T Consensus        50 ~~~p~l~~-~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  127 (452)
T PRK11273         50 LAMPYLVE-Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL  127 (452)
T ss_pred             HhhHHHHH-c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence            44565554 4 445567799999999999999999999999999999999887766665554432      455667778


Q ss_pred             HHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666        109 SISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       109 ~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      ++.|++.+ ..+.....+.|++|+++|++++++.+...++
T Consensus       128 ~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  167 (452)
T PRK11273        128 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV  167 (452)
T ss_pred             HHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence            88888654 4566778889999999999999998877776

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.49  E-value=4.8e-12  Score=94.78  Aligned_cols=127  Identities=10%  Similarity=0.119  Sum_probs=90.7

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh--hHHHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM--TLDTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  110 (167)
                      ...+.|.|.++..+.+..+.+.+.+...+...++.+++|+++||+|||+.+..+.....+.....  ..+.+..++.+++
T Consensus       235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  314 (393)
T PRK15011        235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL  314 (393)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            35678888866555555667888777778888899999999999999998776644443333222  2345555555665


Q ss_pred             HHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        111 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       111 ~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .++. +...+....+..|..|+ +|+++.++++...++  .+||.++|.+.+.
T Consensus       315 ~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~  366 (393)
T PRK15011        315 NAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI  366 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5553 33445566778898875 589999998887777  8999999988764

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.49  E-value=3e-12  Score=97.96  Aligned_cols=148  Identities=13%  Similarity=0.035  Sum_probs=111.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      ++++++...+..++..+.... ...++|.|.++..+.+..+.++......++..++.++.|++.||+|||+.+..+..+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~  331 (485)
T TIGR00711       253 KYRNFTIGCVYMSLLGLGLYG-SFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILY  331 (485)
T ss_pred             cCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            345555555555555555433 4667899988876667778899999999999999999999999999999988887666


Q ss_pred             HhhHHhhh--H----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         91 CLPIPLMT--L----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        91 ~~~~~~~~--~----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      .++...+.  .    +.+......++.|++. ...++......+..|+++|+++.++.+....+  .+|+.+.|.+.+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       332 AVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66555443  1    3455555667777754 44556667777888999999999999998888  899999888875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.49  E-value=1.4e-12  Score=97.73  Aligned_cols=146  Identities=16%  Similarity=0.197  Sum_probs=99.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      +|.++......++...+++. ..|++|.|.++..+.+..+.+++.+...+...+++++.|+++||+|||+.+..+....+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~   79 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSA-YFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLL   79 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            35677777777888887766 69999999887655566677999999999999999999999999999999887644443


Q ss_pred             hhHHh---hhH------H-HHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666         92 LPIPL---MTL------D-TWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus        92 ~~~~~---~~~------~-~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      +....   +..      + .+...+.+++.|+. +...+....+..|..+  ++++..+......++  ++||.++|.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~  157 (396)
T TIGR00882        80 VLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILF  157 (396)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhh
Confidence            32221   111      1 11223344555553 3445566666666533  234455666555566  78888888775


Q ss_pred             hh
Q psy16666        159 YC  160 (167)
Q Consensus       159 ~~  160 (167)
                      +.
T Consensus       158 ~~  159 (396)
T TIGR00882       158 SI  159 (396)
T ss_pred             cc
Confidence            43

>TIGR00895 2A0115 benzoate transport

Probab=99.48  E-value=6.1e-12  Score=93.53  Aligned_cols=124  Identities=14%  Similarity=0.130  Sum_probs=92.4

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  110 (167)
                      ...++|.+.++.+.++ .+.+...+...++..++.++.|+++||+|||+.................  .+.+......++
T Consensus       269 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (398)
T TIGR00895       269 LTNWLPKLMVELGFSL-SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAI  347 (398)
T ss_pred             HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            4566776666655544 4668888999999999999999999999998554443333333222222  245555666677


Q ss_pred             HHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666        111 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY  157 (167)
Q Consensus       111 ~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l  157 (167)
                      .|++ +...+...+++.|.+|+++|+++.|+.+....+  .+||.++|.+
T Consensus       348 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       348 AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            7774 456778899999999999999999999998888  8999998875

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.48  E-value=8.5e-12  Score=93.04  Aligned_cols=127  Identities=20%  Similarity=0.177  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhHHHHHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISG  112 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  112 (167)
                      ...++|.|.++.+.++ .+.+...+...++..+++.+.|++.||+|+|+++..+.....++...+. +.........+.|
T Consensus       219 ~~~~lp~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~g  296 (381)
T PRK03633        219 LYGLMPLYLNHQGMSD-ASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQAAMAPALFILG  296 (381)
T ss_pred             HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHH
Confidence            4667898988765444 4668888889999999999999999999999988877655555443332 2222333445556


Q ss_pred             HH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666        113 VF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN  161 (167)
Q Consensus       113 ~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~  161 (167)
                      .. ....|...+++.|..|+++++...+..+...++  .+||.++|++.+..
T Consensus       297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~  348 (381)
T PRK03633        297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY  348 (381)
T ss_pred             HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            53 356788889999999988888888888777777  89999999997653

>PRK10504 putative transporter; Provisional

Probab=99.47  E-value=5.5e-12  Score=96.44  Aligned_cols=150  Identities=13%  Similarity=0.044  Sum_probs=109.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      +++++...+...++....... .....|.|.++..+.+..+.++......++..++.++.|++.||+|||+++..+..+.
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~  337 (471)
T PRK10504        259 RTRTFSLGLAGSFAGRIGSGM-LPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGL  337 (471)
T ss_pred             cccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            556666666666666665433 4566788887655566667788888888888889999999999999999988876655


Q ss_pred             HhhHHhhhH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666         91 CLPIPLMTL-----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN  161 (167)
Q Consensus        91 ~~~~~~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~  161 (167)
                      .+....+..     +.+......++.|++. ...+..+.++.+..|+++|+++.++.+....+  .+||.++|.+.+..
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        338 ALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             HHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            554333322     2223334455666643 45677888999999999999999999998888  99999999887643

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.47  E-value=2.8e-12  Score=95.68  Aligned_cols=143  Identities=15%  Similarity=0.172  Sum_probs=105.0

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHH----HHHHHH
Q psy16666         14 SVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFL----LITVFV   89 (167)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----~~~~~~   89 (167)
                      ..+.+....+....+.+. ..|++|.|.++.+.+. .++|++.+...+...++++++|+++||+||+...    ..+..+
T Consensus         5 ~~~~l~~~~~~~~~~~~~-~~p~l~~~l~~~g~s~-~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l   82 (382)
T TIGR00902         5 PFRWLALGFFGYFCAYGI-FLPFFPAWLKGIGLGE-EMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAI   82 (382)
T ss_pred             cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            334566667777777666 7999999999876655 5779999999999999999999999999985433    222222


Q ss_pred             HHhhHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         90 TCLPIPLMTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ..+.......+.+.+++.+.+.+.+ +...|...++..|.  +++|++..|......++  ++||.++|.+.+.
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~  154 (382)
T TIGR00902        83 FAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM  154 (382)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222344788888888877764 45567777777654  56788999998888887  8999999988765

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09952 shikimate transporter; Provisional

Probab=99.47  E-value=2.9e-12  Score=97.30  Aligned_cols=100  Identities=16%  Similarity=0.223  Sum_probs=76.5

Q ss_pred             HHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHH--------HHHHHHHHHHHHH-HHHHHHHHHHh
Q psy16666         58 IKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTW--------WFFAMISISGVFA-VTFSVVFAYVA  126 (167)
Q Consensus        58 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~g~~~-~~~~~~~~~~~  126 (167)
                      ...++..+++++.|+++||+|||+++..+..+..++......  +++        .+++.|+++|++. +..+....++.
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~  151 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV  151 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence            445667788899999999999999999998777776655443  433        4778899999964 56788889999


Q ss_pred             ccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666        127 DVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY  157 (167)
Q Consensus       127 ~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l  157 (167)
                      |++|+++|++..+..+....+  .+++.+...+
T Consensus       152 e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l  184 (438)
T PRK09952        152 ESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI  184 (438)
T ss_pred             HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888776666  4444444433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.47  E-value=6.7e-12  Score=96.72  Aligned_cols=148  Identities=11%  Similarity=0.076  Sum_probs=111.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      ++.+....+..+........ ...++|.|+++..+.+..+.|.......++..++.++.|++.||+|+|+.+..+..+..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~  336 (495)
T PRK14995        258 HRIILSGVVMAMTAMITLVG-FELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSA  336 (495)
T ss_pred             CcccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            44444444444444444333 35678889988877777888999999999999999999999999999998887766665


Q ss_pred             hhHHhhhH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         92 LPIPLMTL-----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        92 ~~~~~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ++...+..     +.+......++.|++. ...++....+.+..|+++++.+.+..+...++  .+|+.+.|.+.+.
T Consensus       337 ~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        337 LSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55443321     4444555667778754 45567788888889999999999999998888  8999999988753

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.47  E-value=8.3e-12  Score=96.10  Aligned_cols=128  Identities=16%  Similarity=0.138  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh-hHHhh--hH--HHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL-PIPLM--TL--DTWWFFAM  107 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~-~~~~~--~~--~~~~~~~~  107 (167)
                      ...++|.|+++..+.+....++......++..++.+..|+++||+|||+.+..+.+...+ +...+  ..  +...+.+.
T Consensus       269 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (490)
T PRK10642        269 LLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAG  348 (490)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            466889888665444444556677778888999999999999999999988777543322 22211  11  34455556


Q ss_pred             HHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        108 ISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       108 ~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      +++.++. +...+....+++|.+|++.|+++.+..+.....  .++|.+.+++.+.
T Consensus       349 ~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~  404 (490)
T PRK10642        349 LLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES  404 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666654 344556778888999999999999975444434  7888888887654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.46  E-value=4.4e-12  Score=96.80  Aligned_cols=124  Identities=15%  Similarity=0.203  Sum_probs=94.9

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHH-HHHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFA-MISI  110 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~  110 (167)
                      ..++|.+.++++.+.. +.+++.+...+...++.++.|+++||+|||++++.+..+..+.......  +.+.+.. .+++
T Consensus        39 ~~~~~~i~~~~g~s~~-~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  117 (455)
T TIGR00892        39 TVFFKELQQIFQATYS-ETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFI  117 (455)
T ss_pred             hhhHHHHHHHhCcchh-HHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4456777777776665 5589999998999999999999999999999998887666665555433  5565544 4577


Q ss_pred             HHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        111 SGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       111 ~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      .|++.+ ..++..+++.|+++ ++|+++.++.+....+  .++|.+++.+.+
T Consensus       118 ~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~  168 (455)
T TIGR00892       118 TGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE  168 (455)
T ss_pred             HHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            787544 34666778888885 7899999999988877  788888887765

>PRK09952 shikimate transporter; Provisional

Probab=99.46  E-value=1.3e-11  Score=93.73  Aligned_cols=129  Identities=15%  Similarity=0.085  Sum_probs=87.4

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh--hH----HHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM--TL----DTWWFFA  106 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~----~~~~~~~  106 (167)
                      ...+.|.|.++..+.+......+.....+...++.+..|+++||+|||+.+..+.++..+....+  ..    +.+.+..
T Consensus       269 ~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (438)
T PRK09952        269 VTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFF  348 (438)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            46678888765544444443444455667778888999999999999998887755544432211  11    2233333


Q ss_pred             HHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHh-h--hhccchhhHhhhhc
Q psy16666        107 MISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETN-Q--YSSPSLTPFYYYCN  161 (167)
Q Consensus       107 ~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~--~~gp~i~g~l~~~~  161 (167)
                      ..++.++. +...+..+++++|.+|+++|+++.++.+.... +  .++|.+.+++.+..
T Consensus       349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~  407 (438)
T PRK09952        349 SIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF  407 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34444554 34566788999999999999999998765544 3  78999999987644

>PRK03699 putative transporter; Provisional

Probab=99.46  E-value=9.7e-12  Score=93.16  Aligned_cols=146  Identities=8%  Similarity=0.009  Sum_probs=103.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL   92 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   92 (167)
                      +.++...+..++....... ...++|.|.++..+.+..+.+...+...++..++.+..|+++||++||+.+.....+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLT-FISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence            4444444444554444433 577899999776566666778888999999999999999999999999988776555544


Q ss_pred             hHHhhhH--HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         93 PIPLMTL--DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        93 ~~~~~~~--~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ....+..  +.+...+..++.|+. ++.++...++..|..|+ ++++..+......++  .++|.+.|.+.+.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~  355 (394)
T PRK03699        284 LMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAH  355 (394)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            4433332  444455555667764 45667777778887754 466777877777766  8999999999875

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.46  E-value=2.7e-12  Score=96.85  Aligned_cols=149  Identities=15%  Similarity=0.252  Sum_probs=96.0

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHH
Q psy16666          9 GIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVF   88 (167)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (167)
                      ..++++++.+.+..++...+.+. ..|++|.|+++..+.+..+.|++.+...++..++++++|+++||+|||+++..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~   84 (420)
T PRK09528          6 YLKNPNYWIFSLFFFFFFFIWSS-WFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIIS   84 (420)
T ss_pred             hhcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            34567788777778888887766 79999999988555566678999999999999999999999999999999877644


Q ss_pred             HHHhhHH-hhhH---HHHH--HHHHHHHHHHH-HH----HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhh
Q psy16666         89 VTCLPIP-LMTL---DTWW--FFAMISISGVF-AV----TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTP  155 (167)
Q Consensus        89 ~~~~~~~-~~~~---~~~~--~~~~~~~~g~~-~~----~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g  155 (167)
                      +..+... .+..   +.+.  ......+.++. +.    ..+....+..+.  +++++..++..+...++  .++|.++|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g  162 (420)
T PRK09528         85 GLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAG  162 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHH
Confidence            4333221 1111   1111  11111222221 11    122223332221  24456667777666666  88999988


Q ss_pred             Hhhhh
Q psy16666        156 FYYYC  160 (167)
Q Consensus       156 ~l~~~  160 (167)
                      .+.+.
T Consensus       163 ~l~~~  167 (420)
T PRK09528        163 ILFNI  167 (420)
T ss_pred             HHHhc
Confidence            88653

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.46  E-value=9.9e-13  Score=100.43  Aligned_cols=114  Identities=13%  Similarity=0.118  Sum_probs=95.0

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH----HHHHHHHHHHHHHHHH-HHHHHH
Q psy16666         47 HTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL----DTWWFFAMISISGVFA-VTFSVV  121 (167)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~-~~~~~~  121 (167)
                      .+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++..+...+...    +.+.+++.++++|+.. ...+..
T Consensus        73 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~  152 (465)
T TIGR00894        73 WSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPAT  152 (465)
T ss_pred             CCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhH
Confidence            34456699999999999999999999999999999999887766665544322    3567788899999864 567889


Q ss_pred             HHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        122 FAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       122 ~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ..+++|++|+++|+++.++.+....+  .++|.+++.+.+.
T Consensus       153 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~  193 (465)
T TIGR00894       153 HKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES  193 (465)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999988877  8899998887653

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.46  E-value=1.5e-11  Score=92.08  Aligned_cols=148  Identities=16%  Similarity=0.178  Sum_probs=97.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHH-HHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLL-ITVFV   89 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~   89 (167)
                      -+.+.+..++..++...+... ..|.+|.+.++..+.+..++|++.+...+...+.+++.+.++||+|||+.++ .+.+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~   91 (393)
T PRK15011         13 FDLTSTAFLIVAFLTGIAGAL-QTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLL   91 (393)
T ss_pred             ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence            356667777778888888766 6899999887655555567799877665655555455544499999988754 44444


Q ss_pred             HHhhHHhhh--HHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccchhhH--HHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         90 TCLPIPLMT--LDTWWFFAMISI-SGVFAVTFSVVFAYVADVTEEHERS--LAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        90 ~~~~~~~~~--~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      ..+......  .+.+.+++...+ .+..+...+...++..|..++++|.  ...+..+...++  .+||.+++.+.+
T Consensus        92 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~  168 (393)
T PRK15011         92 GVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM  168 (393)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            434333333  356655544444 4445556677788888877666553  344666666666  899999998875

>TIGR00898 2A0119 cation transport protein

Probab=99.46  E-value=4.2e-13  Score=103.38  Aligned_cols=123  Identities=17%  Similarity=0.123  Sum_probs=98.6

Q ss_pred             HHHHHHhhCCCc--hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHHH
Q psy16666         36 IISVLNRTFPDH--TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISIS  111 (167)
Q Consensus        36 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  111 (167)
                      ..|...++++..  +..+.++..+...++..++.++.|+++||+|||+++..+.++..++.....  .+++.+++.+++.
T Consensus       111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~  190 (505)
T TIGR00898       111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV  190 (505)
T ss_pred             ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            445555665554  134669999999999999999999999999999999998777766555444  3788899999999


Q ss_pred             HHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        112 GVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       112 g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      |++. +..+...+++.|.+|+++|+++.++......+  +++|.+++.+.
T Consensus       191 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  240 (505)
T TIGR00898       191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP  240 (505)
T ss_pred             HhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9865 56889999999999999999999998777666  66777666543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.46  E-value=1.3e-11  Score=92.57  Aligned_cols=147  Identities=9%  Similarity=0.027  Sum_probs=102.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      ++++.+.+.+..++....+.. ...++|.+.++. +.+..+.+...+...++..++.+..|++.||++||+.+..+..+.
T Consensus       203 ~~~~~~~l~~~~~~~~~~~~~-~~~~lp~~l~~~-g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~  280 (393)
T PRK09705        203 FTPRAWTLGVYFGLINGGYAS-LIAWLPAFYIEI-GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ  280 (393)
T ss_pred             cCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            455555555555555555434 577888888885 455567799999999999999999999999999999888876555


Q ss_pred             HhhHHhhhH---HHHHHHHHHHHHHHH-HHHHHHHHHHHhcccc-chhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666         91 CLPIPLMTL---DTWWFFAMISISGVF-AVTFSVVFAYVADVTE-EHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN  161 (167)
Q Consensus        91 ~~~~~~~~~---~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~  161 (167)
                      .++...+..   +....  ..++.|++ +...+.......|..+ +++|++..++.+....+  .++|.+.|++.+..
T Consensus       281 ~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~  356 (393)
T PRK09705        281 LVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS  356 (393)
T ss_pred             HHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            554443321   22222  12334543 3445656666667664 67899999999888777  89999999998764

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.45  E-value=9.9e-12  Score=93.70  Aligned_cols=128  Identities=13%  Similarity=0.062  Sum_probs=98.6

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      ...++|.|.++..+.+..+.+++.+...++..++.++.+++.||.++++.+..+..+..+....+..  +.+...+..++
T Consensus       242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (417)
T PRK10489        242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL  321 (417)
T ss_pred             HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            3567788888855555567799999999999999999999999988777777776555555444432  44445555666


Q ss_pred             HHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        111 SGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       111 ~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .|++.+ ..+...+++.|..|+++|+++.|+++....+  .+||.+.|.+.+.
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~  374 (417)
T PRK10489        322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM  374 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Confidence            676544 4456778999999999999999999888777  9999999998865

>TIGR00897 2A0118 polyol permease family

Probab=99.45  E-value=1.5e-11  Score=92.33  Aligned_cols=146  Identities=10%  Similarity=0.054  Sum_probs=96.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHH-HHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLL-ITVFVT   90 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~   90 (167)
                      +|+++...+..++....... ...+.|.|.++.+.+. .+.+...+...++..++.+..|+++||+|||+.+. .+....
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~  298 (402)
T TIGR00897       221 NPNVLLGGMVRIINTIGLFG-FAVFLPMFVAELGFST-SEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGC  298 (402)
T ss_pred             ChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence            34444444444444444333 4667898988765444 45588888889999999999999999999887653 222222


Q ss_pred             HhhHHh---hh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         91 CLPIPL---MT----LDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        91 ~~~~~~---~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .+....   ..    .+.+...+..++.|+..+...+....+.|.. |++|+++.|+.+...++  .++|.++|.+.+.
T Consensus       299 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  376 (402)
T TIGR00897       299 GIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF  376 (402)
T ss_pred             HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            221111   11    1344455566667764433344456667764 56899999999998888  8999999988865

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.45  E-value=2e-12  Score=98.15  Aligned_cols=121  Identities=14%  Similarity=0.114  Sum_probs=92.1

Q ss_pred             HHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh------HHHHHHHHHHH
Q psy16666         36 IISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT------LDTWWFFAMIS  109 (167)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~  109 (167)
                      ..|. .++. +.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++.....      .+.+.+.+.++
T Consensus        49 ~~p~-~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  126 (438)
T TIGR00712        49 AMPY-LVEQ-GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLF  126 (438)
T ss_pred             hhHH-HHHc-CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence            3444 4455 55556779999999999999999999999999999998888666665544332      13455666778


Q ss_pred             HHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        110 ISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       110 ~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      +.|++. ...+.....+.|++|+++|++++++.+...++  .++|.+.+...
T Consensus       127 l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~  178 (438)
T TIGR00712       127 LNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGM  178 (438)
T ss_pred             HHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            888754 45577788899999999999999999888777  66776665443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00896 CynX cyanate transporter

Probab=99.44  E-value=3.1e-11  Score=89.11  Aligned_cols=150  Identities=10%  Similarity=0.047  Sum_probs=99.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc-chHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG-RKLFLLITVFV   89 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~~~   89 (167)
                      +++..+...+..++....+.. ...++|.|.++.+. +..+.+...+...++..++++..|++.||++ ||+.+..+..+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~-~~~~lp~~~~~~g~-~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~  272 (355)
T TIGR00896       195 RSPLAWQVTVFFGLQSGLYYS-LIGWLPAILISHGA-SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVL  272 (355)
T ss_pred             cCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Confidence            345555444444444444333 46788999887644 4556799999999999999999999999995 66666666555


Q ss_pred             HHhhHHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhcccc-chhhHHHHHHHHHHHhh--hhccchhhHhhhhccc
Q psy16666         90 TCLPIPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTE-EHERSLAYGLVSSETNQ--YSSPSLTPFYYYCNNK  163 (167)
Q Consensus        90 ~~~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~~  163 (167)
                      .+++...+..  +.... ...++.|++. ..++...+.+.+..+ +++++...++.+....+  .++|.+.|++.+..++
T Consensus       273 ~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       273 QLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN  351 (355)
T ss_pred             HHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5444433332  22222 2345567654 455666666665544 56778888888777666  8899999999876543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.43  E-value=1.7e-11  Score=91.61  Aligned_cols=146  Identities=12%  Similarity=0.090  Sum_probs=97.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      ++.++..+...++....... ...+++.+.++..+.+..+.+.+.+...++..++.++.|+++||++||+....... ..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~-~~  281 (390)
T PRK03545        204 RPALVSLYLLTVVVVTAHFT-AYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIAL-LL  281 (390)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH-HH
Confidence            34444444444433333322 34566777766555555677888899999999999999999999998875443333 22


Q ss_pred             hhHHhh---hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         92 LPIPLM---TLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        92 ~~~~~~---~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ......   ..+.+.+.+..++.|+.. ...+...+.+.|..| ++|+++.|.++....+  .+||.++|.+.+.
T Consensus       282 ~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~  355 (390)
T PRK03545        282 VCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH  355 (390)
T ss_pred             HHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            222221   224555666667777754 344566777888766 5789999999887777  8899999998864

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.42  E-value=2.5e-11  Score=92.85  Aligned_cols=155  Identities=15%  Similarity=0.195  Sum_probs=121.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcch--HHHHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRK--LFLLITV   87 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~   87 (167)
                      ++.|+....++..++..-+... +......|.++..+.+..+...+.....+...++...+|++.||+|.|  +++..++
T Consensus       278 ~~~~~~~~fLia~~l~~dg~~t-i~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l  356 (477)
T PF11700_consen  278 RKLRQLFLFLIAYFLYSDGVNT-IISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISL  356 (477)
T ss_pred             HhChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            3456677777777777777666 577778888866666666667788889999999999999999999988  7877775


Q ss_pred             HHHH-hhHH-hh--------hHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666         88 FVTC-LPIP-LM--------TLDTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT  154 (167)
Q Consensus        88 ~~~~-~~~~-~~--------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~  154 (167)
                      .... +... ++        ..+.+.+++..++.|+ .++..+...++.+|+.|+++.+..+|++......  .+||.+.
T Consensus       357 ~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~  436 (477)
T PF11700_consen  357 ILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLF  436 (477)
T ss_pred             HHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5442 2222 22        2267778888888887 4678899999999999999999999999988877  9999999


Q ss_pred             hHhhhhcccCC
Q psy16666        155 PFYYYCNNKGR  165 (167)
Q Consensus       155 g~l~~~~~~~~  165 (167)
                      |.+.+..++.|
T Consensus       437 g~i~~~tg~~r  447 (477)
T PF11700_consen  437 GLITDATGSQR  447 (477)
T ss_pred             HHHHHHhCCch
Confidence            99988765443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.42  E-value=6.3e-12  Score=96.62  Aligned_cols=128  Identities=11%  Similarity=0.099  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh-H---HHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT-L---DTWWFFAMI  108 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~  108 (167)
                      ...++|.|.++..+.+..+.+.+.+...++..++.++.|+++||+|||+++..+..+..+...... .   +.+......
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL  373 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            356789998655455556779999999999999999999999999999988877554444332221 1   223333333


Q ss_pred             HHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        109 SISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       109 ~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ++.+. ..+..+...++++|.+|+++|++++++.+....+  .+||.++|.+.+.
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~  428 (496)
T PRK03893        374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR  428 (496)
T ss_pred             HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence            44333 3344566778899999999999999998888777  8899999988764

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.42  E-value=4.1e-11  Score=89.42  Aligned_cols=147  Identities=16%  Similarity=0.132  Sum_probs=106.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      +|+++...+..++....... ...+.|.|.++.+.++ .+.|...+...+...+..++.|++.||+|+|+.+..+....+
T Consensus       204 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~  281 (382)
T PRK11128        204 EPTVWRFLLCVSLLQGSHAA-YYGFSAIYWQAAGYSA-STIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGV  281 (382)
T ss_pred             ChhHHHHHHHHHHHHHHhHh-HHHHHHHHHHHCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            44555555555555444433 4667788887765544 566999898989999999999999999999999888877666


Q ss_pred             hhHHhhh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHH-Hhh--hhccchhhHhhhhc
Q psy16666         92 LPIPLMT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSE-TNQ--YSSPSLTPFYYYCN  161 (167)
Q Consensus        92 ~~~~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~--~~gp~i~g~l~~~~  161 (167)
                      +......  .+.+.+++..++.|+.. ...+....++.+. +++++++..+..+.. .+.  .+||.++|.+.+..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~  356 (382)
T PRK11128        282 VRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL  356 (382)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6554443  36676777778888854 4566777888886 566678889887644 333  78999999998753

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.42  E-value=5.9e-12  Score=93.96  Aligned_cols=136  Identities=20%  Similarity=0.206  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcch----HHHHHHHHHHHhhHHh
Q psy16666         21 VIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRK----LFLLITVFVTCLPIPL   96 (167)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~   96 (167)
                      ..+....+.+. ..|++|.|.++.+.+. .++|+..+...+...++++++|+++||+|||    +.+.+...........
T Consensus        12 ~~~~~~~~~g~-~~p~l~~~l~~~g~s~-~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~   89 (382)
T PRK11128         12 SYFGYFFAYGV-FLPFWSVWLKGQGYTP-ETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWF   89 (382)
T ss_pred             HHHHHHHHHHH-HhhhHHHHHHhcCCCH-HHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            35555566566 7999999999886655 5779999999999999999999999999984    3332222222222222


Q ss_pred             hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         97 MTLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        97 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ...+.|.+++.+.+.|+.. ...+...++..++  +++|+++.+......++  .+||.+++++.+.
T Consensus        90 ~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~  154 (382)
T PRK11128         90 GAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW  154 (382)
T ss_pred             hcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            2236777778888888754 4566667777765  35577777777777777  9999999988754

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.41  E-value=2.7e-11  Score=89.64  Aligned_cols=148  Identities=17%  Similarity=0.184  Sum_probs=113.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV   89 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (167)
                      .++++++..++..++...+. +..++++.+++++..+.+...++++...++++..+++...|+++|| +.|+.+.....+
T Consensus       208 l~~p~v~~~l~~t~l~~~g~-F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l  285 (394)
T COG2814         208 LRRPGVLLGLLATFLFMTGH-FALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLL  285 (394)
T ss_pred             hcCchHHHHHHHHHHHHcch-hhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHH
Confidence            46788888888888888775 4368899889998888777888999999999999999999999999 888887777555


Q ss_pred             HHhhHHhhhH---HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         90 TCLPIPLMTL---DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        90 ~~~~~~~~~~---~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .++....+..   +.+...+..+++|+.. ......+..+++ ..||++..+.+++....++  .+|..+||.+.+.
T Consensus       286 ~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~  361 (394)
T COG2814         286 LALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA  361 (394)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5554444433   4555555555555533 233344555555 3367899999999999999  9999999998875

>PRK12382 putative transporter; Provisional

Probab=99.41  E-value=1.6e-11  Score=91.80  Aligned_cols=125  Identities=17%  Similarity=0.154  Sum_probs=95.1

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      ...+.|.|.++.+..+   .++......++..++++..|++.||+|+|+.+..+..+..+....+..  +.+...+..++
T Consensus       235 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (392)
T PRK12382        235 IGTFVSLYFASKGWAM---AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL  311 (392)
T ss_pred             HHHHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            4566777777654432   255666777888899999999999999999888876666555544433  45555666677


Q ss_pred             HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .|++. ...+...+.+.|.+|+++|+++.|+.+....+  .+||.+.|.+.+.
T Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~  364 (392)
T PRK12382        312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS  364 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77754 45677788889999999999999999998887  8999999998764

>TIGR00896 CynX cyanate transporter

Probab=99.40  E-value=6e-12  Score=92.92  Aligned_cols=126  Identities=15%  Similarity=0.091  Sum_probs=98.6

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh-hHHHHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM-TLDTWWFFAMISIS  111 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  111 (167)
                      ..|.+|.+.++++.+.. +.+++.+...++..++.++.|+++||+|||+++..+.....++.... ..+.+.+++.+++.
T Consensus        19 ~~~~lp~l~~~~~~s~~-~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   97 (355)
T TIGR00896        19 VGPLLPQIRSALGMSFS-VAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALI   97 (355)
T ss_pred             CcccHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            46788888888876664 66999999999999999999999999999999988866555544433 23667777888888


Q ss_pred             HHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        112 GVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       112 g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      |++.+ ..+.....+.|.+| ++|+++.+..+...++  .++|.+++.+.+.
T Consensus        98 g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  148 (355)
T TIGR00896        98 GVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQH  148 (355)
T ss_pred             HHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88654 45566777888886 6799999999887777  7788777776543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.40  E-value=1.8e-11  Score=91.73  Aligned_cols=128  Identities=16%  Similarity=0.241  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhhCCCchH---HHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTF---LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAM  107 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~  107 (167)
                      ..+.++.|.++..+...   ...+.+.+...++..++.+..|+++||+|||+.+..+.....+......  .+.+...+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
T PRK09874        238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL  317 (408)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            46777777776543322   2235666677788889999999999999999998888666555444333  255666667


Q ss_pred             HHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        108 ISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       108 ~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .++.|++. ...+...+.+.|..|+++|++.++..+....+  .+||.++|.+.+.
T Consensus       318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~  373 (408)
T PRK09874        318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN  373 (408)
T ss_pred             HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh
Confidence            77778754 56677888889999999999999999888777  8999999988754

>PRK15075 citrate-proton symporter; Provisional

Probab=99.40  E-value=2.8e-11  Score=91.78  Aligned_cols=130  Identities=16%  Similarity=0.181  Sum_probs=88.2

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh-hHHhh---hH--HHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL-PIPLM---TL--DTWWFFA  106 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~-~~~~~---~~--~~~~~~~  106 (167)
                      ...+.|.|.++..+.+..+.++......++..++.+.+|+++||+|||+.+..+.....+ .....   ..  +......
T Consensus       257 ~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (434)
T PRK15075        257 ITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLA  336 (434)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            577789998875455555667788888899999999999999999999987776433322 11111   11  2222222


Q ss_pred             HHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhhhcc
Q psy16666        107 MISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYYCNN  162 (167)
Q Consensus       107 ~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~~~~  162 (167)
                      ...+.++. +...+....+..|.+|+++|+++.++.+.....   .++|.+.|++.+..+
T Consensus       337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            23333443 334455668899999999999999986554432   678999998877543

>KOG4686|consensus

Probab=99.39  E-value=8.9e-12  Score=88.05  Aligned_cols=152  Identities=18%  Similarity=0.237  Sum_probs=116.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHH-HH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT-VF   88 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~-~~   88 (167)
                      .-.+++|.+.+..++...++.- ....-|.+.++..+.++...+.+.+.......+.+|+.|.++||+|++...+.+ ++
T Consensus       261 ~f~ppfw~~~iicv~yyva~fP-Fi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~  339 (459)
T KOG4686|consen  261 TFYPPFWVLVIICVLYYVAWFP-FITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACI  339 (459)
T ss_pred             ccCccHHHHHHHHHHHHHHHHH-HhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHH
Confidence            3457888888888777777522 344446666666666666778888888888999999999999999999877666 44


Q ss_pred             HHHhhHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhcc
Q psy16666         89 VTCLPIPLMTLDTWWFFAMISISGVFAVTFS-VVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCNN  162 (167)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~  162 (167)
                      ....+...+.++.+.-.....+.|......+ ..+..++.+.|+++-|++.|..++.+++  ++.|+++|.+.+.++
T Consensus       340 ~tl~~H~~l~Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  340 LTLLGHSGLFFTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             HHHHHhhhHHhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence            5555655666666666677778887655444 5788899999999999999999999999  999999999986543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.39  E-value=1.1e-12  Score=96.76  Aligned_cols=143  Identities=15%  Similarity=0.192  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHHHHHh---HHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         15 VYHALVVIFLEFFAWGL---LTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        15 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      .+.+++..++.+.++.+   ......|...++.+ .+-.+.|++.+.+.+.+.++..+.|.++||.+.|..+..++++++
T Consensus        27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~-lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa  105 (448)
T COG2271          27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGG-LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA  105 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence            34555666666666544   12334466666555 444577999999999999999999999999999999999999999


Q ss_pred             hhHHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchh--hHhh
Q psy16666         92 LPIPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT--PFYY  158 (167)
Q Consensus        92 ~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~--g~l~  158 (167)
                      +...++.+  +.+.+.+...+.|.+. ...|++...+..++++++||+..++.+++.++  .+.|++.  +++.
T Consensus       106 i~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~  179 (448)
T COG2271         106 IVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence            98888765  6677777788999865 46789999999999999999999999999999  6666666  5554

>TIGR00901 2A0125 AmpG-related permease

Probab=99.39  E-value=4.3e-11  Score=88.34  Aligned_cols=130  Identities=15%  Similarity=0.133  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHH-HHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhh
Q psy16666         15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKG-FLSFLSAPLIGALSDLWGRKLFLLITVFVTCLP   93 (167)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   93 (167)
                      ++...+..++....... ...++|.|.++.+ .+..+.+.+..... +...++.+++|++.||+|||+.+..+.++.++.
T Consensus       211 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g-~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~  288 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSA-ATVLTTLFLLDMG-FSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALT  288 (356)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-CCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            33344444444444434 4678888888844 44456677776655 577899999999999999999888776665554


Q ss_pred             HHhhhH-------------HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHh
Q psy16666         94 IPLMTL-------------DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETN  146 (167)
Q Consensus        94 ~~~~~~-------------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  146 (167)
                      ...+..             +.+.+....++.++. +...+...++..|.+|+|+|++.+|+.++..+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       289 NAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            443221             234445555666775 45778999999999999999999999887664

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.39  E-value=1.8e-12  Score=82.76  Aligned_cols=104  Identities=24%  Similarity=0.316  Sum_probs=84.1

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchh
Q psy16666         57 GIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHE  133 (167)
Q Consensus        57 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~  133 (167)
                      +...++..++.++.|++.||+|||+.+..+.....+......  .+.+.....+++.|+.. ...+...+++.|..|+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            345677888999999999999999998888666665544443  36677777788888754 566788899999999999


Q ss_pred             hHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        134 RSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       134 r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      |++..+..+....+  .++|.+++.+.+.
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  113 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQF  113 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhcc
Confidence            99999999988888  8899999988643

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.38  E-value=7.2e-11  Score=88.44  Aligned_cols=125  Identities=15%  Similarity=0.136  Sum_probs=93.2

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      ...+++.|.++.+..   ..+...+...++..++.+..|++.||+|+|+.+..+..+..++......  +.+...+..++
T Consensus       235 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (399)
T PRK05122        235 IATFITLYYAARGWD---GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAAL  311 (399)
T ss_pred             HHHHHHHHHHHcccc---cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            456677777665432   2356667788888999999999999999999888776655555444332  55556666677


Q ss_pred             HHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        111 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       111 ~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .|++ +...+.......|..|+++|+++.++++.....  .++|.+.|.+.+.
T Consensus       312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  364 (399)
T PRK05122        312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW  364 (399)
T ss_pred             HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7874 456677777888999999999999999988777  6788888888654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.38  E-value=6.5e-11  Score=89.77  Aligned_cols=125  Identities=21%  Similarity=0.183  Sum_probs=81.9

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhH-Hhhh--H---HHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPI-PLMT--L---DTWWFFA  106 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~-~~~~--~---~~~~~~~  106 (167)
                      ...++|.|+++..+.+..+.+...+...+...++.++.|+++||+|||+.+.....+..+.. ....  .   +.+..+.
T Consensus       262 ~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (432)
T PRK10406        262 FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG  341 (432)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            46788998876555555566787888788888999999999999999998776644332221 1111  1   2222222


Q ss_pred             HHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHh
Q psy16666        107 MISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFY  157 (167)
Q Consensus       107 ~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l  157 (167)
                      ...+.... +...+....+++|.+|+|+|+++.|+.+...+.   ...|.+.+.+
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l  396 (432)
T PRK10406        342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL  396 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH
Confidence            22222222 223346778899999999999999998876554   4466666644

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.37  E-value=7.4e-11  Score=90.08  Aligned_cols=143  Identities=18%  Similarity=0.208  Sum_probs=101.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhh----hhcchHHHHHH-H
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD----LWGRKLFLLIT-V   87 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~-~   87 (167)
                      +++..+....+-..+++.. ..++++.|.++.+.+. .+.+++..+..+...+.+|+.|+++|    |+|||+.++.. .
T Consensus         4 ~~li~~~~~~~Giq~~~~l-~~~~l~~yl~~lg~~~-~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~   81 (477)
T TIGR01301         4 RKLLRVASVAAGVQFGWAL-QLSLLTPYVQELGIPH-AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGA   81 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHH
Confidence            3445555555566666656 6888888998877755 56699999999999999999999999    59999988775 4


Q ss_pred             HHHHhhHHhhhH--HH-----------------HHHHHHHHHHHH-HHHHHHHHHHHHhccccchhh--HHHHHHHHHHH
Q psy16666         88 FVTCLPIPLMTL--DT-----------------WWFFAMISISGV-FAVTFSVVFAYVADVTEEHER--SLAYGLVSSET  145 (167)
Q Consensus        88 ~~~~~~~~~~~~--~~-----------------~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~  145 (167)
                      ....++..++..  +.                 +..++...+.-+ .+...++..++++|..|+++|  +.+.++.+...
T Consensus        82 ~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~  161 (477)
T TIGR01301        82 ALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFM  161 (477)
T ss_pred             HHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHH
Confidence            444444444433  21                 112222222223 345667889999999998866  57888888877


Q ss_pred             hh--hhccchhhHh
Q psy16666        146 NQ--YSSPSLTPFY  157 (167)
Q Consensus       146 ~~--~~gp~i~g~l  157 (167)
                      ++  .+|+.+++..
T Consensus       162 ~lG~ilg~~~g~~~  175 (477)
T TIGR01301       162 AIGNVLGYAAGAYS  175 (477)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77  8888888865

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.37  E-value=3.9e-11  Score=91.59  Aligned_cols=146  Identities=15%  Similarity=0.131  Sum_probs=102.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh--cchHHHHHH--HH
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW--GRKLFLLIT--VF   88 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~--~~   88 (167)
                      ++++......++...+... ...++|.|.++.+ .+..+.++..+...++..++++..|+++||.  ++|+.....  .+
T Consensus       241 ~~~~~~~~~~~l~~~~~~~-~~~~l~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  318 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFA-PIIFLVPYAKDKG-VDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALL  318 (455)
T ss_pred             chHHHHHHHHHHHHHHccc-hHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHH
Confidence            3444444444444444333 4667788888764 4456779999999999999999999999973  334333332  22


Q ss_pred             HHHhhHHhh--hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         89 VTCLPIPLM--TLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        89 ~~~~~~~~~--~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ...+.....  ..+.+.+.+..++.|+.. ...+...+++.|.+|++++++.+++++...++  .+||.++|.+.+.
T Consensus       319 ~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~  395 (455)
T TIGR00892       319 FNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA  395 (455)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh
Confidence            222322222  236666777778888754 56678889999999999999999999998888  9999999988764

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.37  E-value=6.2e-11  Score=87.51  Aligned_cols=148  Identities=7%  Similarity=-0.057  Sum_probs=97.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc-chHH-HHHH-HHH
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG-RKLF-LLIT-VFV   89 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~-~~~~-~~~   89 (167)
                      +.++.+.+..++....... ...+.|.|.++..+.+..+.+...+...++..++.+..|+++||.. ||+. +... ...
T Consensus       216 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~  294 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTG-ILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMAL  294 (379)
T ss_pred             chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3444444444444444333 4677888887665555567788999999999999999999999864 3332 2222 111


Q ss_pred             HHhhHHhhh----HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666         90 TCLPIPLMT----LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN  161 (167)
Q Consensus        90 ~~~~~~~~~----~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~  161 (167)
                      .........    .+.+......++.|.. .+..+....+..|..|+++|+++.|+.+....+  .++|.+.|.+.+..
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  373 (379)
T TIGR00881       295 IIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF  373 (379)
T ss_pred             HHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence            122222211    1333444444555553 344456677899999999999999999998888  89999999998753

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.36  E-value=8.2e-11  Score=88.39  Aligned_cols=135  Identities=19%  Similarity=0.150  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----cchH-HHHHHHHHHHhhH
Q psy16666         21 VIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-----GRKL-FLLITVFVTCLPI   94 (167)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~-~~~~~~~~~~~~~   94 (167)
                      ..+.+....++ ..+.+|.|+++.+.+.+ ++|++......  .+..+++|+++||+     |||| .+..+....+++.
T Consensus         7 l~~~~~~~~~~-~~~~~~~~l~~~g~~~~-~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          7 LGFASGLPLAL-TSGTLQAWMTVEGLDIQ-TIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHhhhHHH-HHHHHHHHHHHcCCCHH-HHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence            34455555556 68899999998876664 66888665554  68899999999999     7765 5666655554443


Q ss_pred             HhhhH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         95 PLMTL-----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        95 ~~~~~-----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      .....     +.+.+.+..++.+.. +...++..+++.|+.|+|+|+++.++.....++  .+++.+++.+.+
T Consensus        83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~  155 (402)
T PRK11902         83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD  155 (402)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            33222     345555555555654 456678999999999999999999999887776  777777766654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.36  E-value=5.3e-11  Score=90.08  Aligned_cols=148  Identities=12%  Similarity=0.126  Sum_probs=101.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      ++|+++..++..++...+... .....+.|.++..+.+ ...+.......++..++.+++++++||+|+|+++..+..+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~  297 (437)
T TIGR00792       220 KNDQLLILCLAYLFYNLAFNI-KNGVQVYYFTYVLGDP-ELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLM  297 (437)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HcchhheeEeeecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            345555555555555555433 2334455555444433 34577777788999999999999999999999988886666


Q ss_pred             HhhHHhhhH---HHHHHHHHHHHHHHH-HHHHHHHHHHHhcccc-------chhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666         91 CLPIPLMTL---DTWWFFAMISISGVF-AVTFSVVFAYVADVTE-------EHERSLAYGLVSSETNQ--YSSPSLTPFY  157 (167)
Q Consensus        91 ~~~~~~~~~---~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~--~~gp~i~g~l  157 (167)
                      +++...+..   +.+...+..++.|++ +...+..+++++|..|       +++++...|+.+....+  .+++.+.|.+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l  377 (437)
T TIGR00792       298 VLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI  377 (437)
T ss_pred             HHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555444332   344455555666664 4556778888888865       45678999999988888  8999999988


Q ss_pred             hhh
Q psy16666        158 YYC  160 (167)
Q Consensus       158 ~~~  160 (167)
                      .+.
T Consensus       378 l~~  380 (437)
T TIGR00792       378 LGI  380 (437)
T ss_pred             HHH
Confidence            764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.36  E-value=1.2e-10  Score=88.92  Aligned_cols=148  Identities=7%  Similarity=-0.004  Sum_probs=92.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh--cchHHHH-HHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW--GRKLFLL-ITVF   88 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~-~~~~   88 (167)
                      ++.++...+..++....... ...++|.|+++..+.+..+.+.......++..++.++.|+++||+  +||+... ....
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~-~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~  330 (452)
T PRK11273        252 NKLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT  330 (452)
T ss_pred             ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHH
Confidence            34445444544444444333 467899999876555555668888888899999999999999999  4554322 2222


Q ss_pred             HHHhhHHhhhH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhhh
Q psy16666         89 VTCLPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYYC  160 (167)
Q Consensus        89 ~~~~~~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~~  160 (167)
                      +..++...+..    +.+...+..+..|.. .+.......+..|.+|+++|+++.|+.+....+   ..+|.+.|.+.+.
T Consensus       331 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~  410 (452)
T PRK11273        331 LVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF  410 (452)
T ss_pred             HHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            22222222211    223333333344432 222233445678999999999999999877666   3479999988764

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.35  E-value=9.3e-11  Score=90.69  Aligned_cols=148  Identities=16%  Similarity=0.165  Sum_probs=113.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      ++.+...+...++..+..+. ....+|.+.++..+.++...|++.++.+++..++....+++.+|+++++.+..+.+..+
T Consensus       217 ~~~l~~~l~~~~~~~l~~~a-~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a  295 (524)
T PF05977_consen  217 SPPLRSVLLRSFLFNLFASA-VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFA  295 (524)
T ss_pred             chHHHHHHHHHHHHHHhhhH-HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHH
Confidence            34444444444444443333 45668888877766666677999999999999999999999999999988888877776


Q ss_pred             hhHHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         92 LPIPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        92 ~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ++...++.  +.+...+..++.|++. ......++.+.+..|++.||+++++++.....  .+|..+.|.+.+.
T Consensus       296 ~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~  369 (524)
T PF05977_consen  296 LALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH  369 (524)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66655554  6666667777778754 55667889999999999999999999877666  8889999988764

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG0255|consensus

Probab=99.35  E-value=9.7e-12  Score=96.34  Aligned_cols=113  Identities=22%  Similarity=0.299  Sum_probs=94.2

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHH-HHHHHHHHH
Q psy16666         47 HTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVF-AVTFSVVFA  123 (167)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~-~~~~~~~~~  123 (167)
                      .+.....+..+++.++..+|+.++|+++||+|||+++++++++..++....+.  +++.+.+.|++.|++ ++.......
T Consensus       115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~  194 (521)
T KOG0255|consen  115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFG  194 (521)
T ss_pred             CcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHh
Confidence            34455688899999999999999999999999999999998888776655444  899999999999995 577889999


Q ss_pred             HHhccccchhhHHHHHHHHHHHhh-hhccchhhHhhh
Q psy16666        124 YVADVTEEHERSLAYGLVSSETNQ-YSSPSLTPFYYY  159 (167)
Q Consensus       124 ~~~~~~~~~~r~~~~~~~~~~~~~-~~gp~i~g~l~~  159 (167)
                      +++|+.++++|+.+..+....+.. ..+|+.++++..
T Consensus       195 ~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~  231 (521)
T KOG0255|consen  195 LVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITR  231 (521)
T ss_pred             hheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999994444444 777777776654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.35  E-value=9.1e-11  Score=88.58  Aligned_cols=127  Identities=13%  Similarity=0.049  Sum_probs=90.2

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      ...++|.|.++.+. +..+.+...+...++..++.+..|++.||+|||+.+..+.....+.......  +........++
T Consensus       250 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (426)
T PRK12307        250 IFGLLPTYLAGEGF-DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL  328 (426)
T ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence            35677888887654 4456688888889999999999999999999999988876655544333221  11111122222


Q ss_pred             HHH--H-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        111 SGV--F-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       111 ~g~--~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .+.  . .+..+..+.++.|.+|+++|+++.|+.+....+  .++|.+.|++.+.
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~  383 (426)
T PRK12307        329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT  383 (426)
T ss_pred             HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence            232  1 233455667889999999999999998887777  8999999988754

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.35  E-value=1.6e-11  Score=92.67  Aligned_cols=125  Identities=14%  Similarity=0.069  Sum_probs=90.9

Q ss_pred             HHHHHHhhC---CCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHH
Q psy16666         36 IISVLNRTF---PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISI  110 (167)
Q Consensus        36 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  110 (167)
                      ..|.|..+.   .+.+..+.+.+.+...+...++.+++|+++||+|+|+.+..+..+..+......  .+.+.+....++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l  324 (420)
T PRK09528        245 QFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLL  324 (420)
T ss_pred             HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            445554432   123345668888988999999999999999999999998887666665544443  366666666777


Q ss_pred             HHHHH-HHHHHHHHHHhccccchhhHHHHHH-HHHHHhh--hhccchhhHhhhh
Q psy16666        111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGL-VSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .++.. ...+....++.|..|++.|++..+. ++....+  +++|.+.|++.+.
T Consensus       325 ~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~  378 (420)
T PRK09528        325 HAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS  378 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence            77654 3456677889999999999887665 4555555  8899999998864

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.35  E-value=2e-10  Score=87.25  Aligned_cols=146  Identities=13%  Similarity=0.017  Sum_probs=91.1

Q ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh--cc-hHHHHHH---H
Q psy16666         14 SVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW--GR-KLFLLIT---V   87 (167)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~-r~~~~~~---~   87 (167)
                      .++...+..++....... ...++|.|+++..+.+..+.+...+...++..++.+..|+++||+  ++ |+.....   .
T Consensus       244 ~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~  322 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAA-INDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence            344444433443433333 466889998665555556678888999999999999999999998  33 3322221   1


Q ss_pred             HHHHhhHHhhhH-HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         88 FVTCLPIPLMTL-DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        88 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ....+....... +........+..|+.. +........+.|..|+++|+++.|+.+....+  +++|.+.|++.+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~  399 (434)
T PRK11663        323 LLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI  399 (434)
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh
Confidence            111111111122 2222223333334322 22233456778999999999999999998888  8999999988764

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.35  E-value=9.2e-11  Score=90.39  Aligned_cols=148  Identities=18%  Similarity=0.143  Sum_probs=103.5

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----cchHH
Q psy16666          8 SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-----GRKLF   82 (167)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~   82 (167)
                      +..++|+...++...+........ ..+.+|.+.++.+.+. .+++.. +...... ++++++|+++||+     |||+.
T Consensus         7 ~~~~~~~~~~~~~l~~~~gl~~~~-~~~~l~~~l~~~g~~~-~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~   82 (491)
T PRK11010          7 RIFQQPNSAILLILGFASGLPLAL-TSGTLQAWMTVENIDL-KTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRG   82 (491)
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCH-HHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchH
Confidence            344555666666666666666555 6888999988876555 455765 3333333 6889999999999     98886


Q ss_pred             -HHHHHHHHHhhHHhhhH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccch
Q psy16666         83 -LLITVFVTCLPIPLMTL-----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSL  153 (167)
Q Consensus        83 -~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i  153 (167)
                       +..+.+..+++....+.     +.+.+.+.+++.+++. ...+...+++.|++|+|+|+++.++......+  .+++.+
T Consensus        83 ~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l  162 (491)
T PRK11010         83 WLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGL  162 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             44555555444333322     5666777777777754 55568899999999999999999999888777  777777


Q ss_pred             hhHhhh
Q psy16666        154 TPFYYY  159 (167)
Q Consensus       154 ~g~l~~  159 (167)
                      ++++.+
T Consensus       163 ~~~l~~  168 (491)
T PRK11010        163 ALWLAD  168 (491)
T ss_pred             HHHHHh
Confidence            776654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.34  E-value=1.9e-12  Score=102.28  Aligned_cols=127  Identities=19%  Similarity=0.204  Sum_probs=104.7

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhHH------------
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLD------------  100 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------  100 (167)
                      ..+.++.+.++++.++. +.|++.+.+.++..++.++.+++.||+|||+.+.++.++.+++.++++.+            
T Consensus        52 ~~~~l~~iek~F~lss~-~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~  130 (633)
T TIGR00805        52 VNSSLTTIERRFKLSTS-SSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTT  130 (633)
T ss_pred             HHhhchhhhhhhCCCCC-cceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccc
Confidence            56667777777776665 55999999999999999999999999999999988877777765554321            


Q ss_pred             -----------------------------------------HHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHH
Q psy16666        101 -----------------------------------------TWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAY  138 (167)
Q Consensus       101 -----------------------------------------~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~  138 (167)
                                                               ...++++++++|++. ...+...+++.|.+|+++|+++.
T Consensus       131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~  210 (633)
T TIGR00805       131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYI  210 (633)
T ss_pred             ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHH
Confidence                                                     234567899999965 67788999999999999999999


Q ss_pred             HHHHHHHhh--hhccchhhHhhhh
Q psy16666        139 GLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       139 ~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ++.+....+  .+|+++++.+.+.
T Consensus       211 ~i~~~~~~iG~~lG~llgg~l~~~  234 (633)
T TIGR00805       211 GILESIAVFGPAFGYLLGSFCLQI  234 (633)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhc
Confidence            999998888  8999999988753

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.8e-10  Score=84.72  Aligned_cols=143  Identities=16%  Similarity=0.068  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH
Q psy16666         16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP   95 (167)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   95 (167)
                      ..+....++..+.... ..+.+|.+.+.++.+.. +++++..++..++.+.+++.|++.+|+|+|+-++.++.+++++..
T Consensus        16 v~~t~lFfl~G~~~~l-~diLip~l~~~f~ls~~-~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~   93 (422)
T COG0738          16 VLLTSLFFLWGFITCL-NDILIPHLKEVFDLTYF-EASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA   93 (422)
T ss_pred             HHHHHHHHHHHHHhhc-chhhHHHHHHHhCccHH-HHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3333344444444333 57777877776666664 669999999999999999999999999999999999999999888


Q ss_pred             hhhH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         96 LMTL-----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        96 ~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ++..     ++..++.+.++.+.+- ......+.+++.+.|+++..+-+++.+.+.++  ++||.+++.+..+
T Consensus        94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils  166 (422)
T COG0738          94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS  166 (422)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            7752     5666666777777764 45678999999999998888889999999888  9999999988764

>KOG2532|consensus

Probab=99.33  E-value=1.6e-11  Score=93.49  Aligned_cols=111  Identities=17%  Similarity=0.214  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH----HHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy16666         50 LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAY  124 (167)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~  124 (167)
                      .+-+++.+....++.+++.+.|+++||+|.|+++..+.++.++...+...    +.+.+++.|+++|+. +..+|....+
T Consensus        73 ~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i  152 (466)
T KOG2532|consen   73 TEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSI  152 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhce
Confidence            44599999999999999999999999999999999998888887776654    556778999999985 5688999999


Q ss_pred             HhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        125 VADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       125 ~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .+++.|+++|++..++......+  +++-+++|.+.+.
T Consensus       153 ~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s  190 (466)
T KOG2532|consen  153 LAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES  190 (466)
T ss_pred             eeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence            99999999999999999998877  6666778877655

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.32  E-value=1.6e-10  Score=87.25  Aligned_cols=145  Identities=12%  Similarity=0.085  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHH-HHHHHHHHHhh
Q psy16666         16 YHALVVIFLEFFAWGLLTMPIISVLNRTFP-DHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLF-LLITVFVTCLP   93 (167)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~   93 (167)
                      +...+..++....... ...++|.++++.+ +.+..+.+.......++..++.+.+|+++||++||+. .........+.
T Consensus       245 ~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~  323 (412)
T TIGR02332       245 MLYTLAYFCLTNTLSA-INIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAG  323 (412)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHH
Confidence            3333334444444434 5788999998753 4445666888899999999999999999999997664 33333333332


Q ss_pred             HHhhh-H-HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666         94 IPLMT-L-DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN  161 (167)
Q Consensus        94 ~~~~~-~-~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~  161 (167)
                      ..... . +....+....+.+++. ...+.......|..|+++|+++.|+.+...++  +++|.+.|.+.+..
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~  396 (412)
T TIGR02332       324 WLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDAT  396 (412)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccC
Confidence            22111 1 2222222222222221 12234455567889999999999999999888  89999998887653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.32  E-value=2.6e-10  Score=85.69  Aligned_cols=150  Identities=15%  Similarity=0.168  Sum_probs=116.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      ++|++...++..++.....+. ...+.+.|+++.++.+....+...+...+..++.-...+++..|+|.|+++.++.+..
T Consensus       205 k~~~~~~Fll~~~l~~~~~~~-~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~  283 (400)
T PF03825_consen  205 KNPRFLVFLLAAFLIGISHAA-YYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAY  283 (400)
T ss_pred             cCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            355666666666666666655 6888899999998655556688888888899999999999999999999999998888


Q ss_pred             HhhHHhhhH---HHHHHHHH----HHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHH-hh--hhccchhhHhhh
Q psy16666         91 CLPIPLMTL---DTWWFFAM----ISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSET-NQ--YSSPSLTPFYYY  159 (167)
Q Consensus        91 ~~~~~~~~~---~~~~~~~~----~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~--~~gp~i~g~l~~  159 (167)
                      ++=+.+++.   +.+.....    ..+.|. ++........++.|..|++.|++++++++... ++  .+|..++|++++
T Consensus       284 ~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~  363 (400)
T PF03825_consen  284 AVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYD  363 (400)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            886655543   22332222    345787 56677899999999999999999999998754 44  999999999987


Q ss_pred             hc
Q psy16666        160 CN  161 (167)
Q Consensus       160 ~~  161 (167)
                      ..
T Consensus       364 ~~  365 (400)
T PF03825_consen  364 AF  365 (400)
T ss_pred             Hh
Confidence            54

>PTZ00207 hypothetical protein; Provisional

Probab=99.32  E-value=3.3e-10  Score=88.42  Aligned_cols=121  Identities=12%  Similarity=0.044  Sum_probs=87.8

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--------HHHHHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--------DTWWFF  105 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--------~~~~~~  105 (167)
                      ..+.+...++++.+. .+.+++.+.. .......++.|+++||+|+|+++.++.++..++..+.+.        +.+.+.
T Consensus        47 sv~s~~L~~~lgls~-~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~  124 (591)
T PTZ00207         47 NLISGAMQARYNLTQ-RDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS  124 (591)
T ss_pred             HHHHHHHHHHhCcCH-HHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence            344455556655554 4567777663 344456778999999999999999998877776665543        567778


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHh
Q psy16666        106 AMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFY  157 (167)
Q Consensus       106 ~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l  157 (167)
                      +.+++.|++.+ ..+.....+.+++| ++|+++.|+.....++   +++++..+++
T Consensus       125 l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        125 VYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888654 55677778889986 7799999999998888   3455555544

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.31  E-value=3.2e-10  Score=84.83  Aligned_cols=147  Identities=9%  Similarity=-0.007  Sum_probs=96.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHH-HHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGF-LSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      |.++......++....... ...+.+.|.+|.+. +..+++++...... ...++..+.|++.||+|+|+.+..+.....
T Consensus       208 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~G~-s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~  285 (390)
T TIGR02718       208 PLAWSLLALALLSAMTAVS-GFGLSKLYLVDAGW-PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAG  285 (390)
T ss_pred             cCHHHHHHHHHHHHHHHHH-HHHHhhHHHHhcCC-CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4445555555555554444 46677888888654 44566888777654 566778999999999999998887754442


Q ss_pred             h-hHHhhhH-------HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccc-hhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         92 L-PIPLMTL-------DTWWFFAMISISGVF-AVTFSVVFAYVADVTEE-HERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        92 ~-~~~~~~~-------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      + ....+..       +.+.......+.++. +...+..++...+..++ +++++.++..++..++  .+||.++|.+.+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~  365 (390)
T TIGR02718       286 SLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD  365 (390)
T ss_pred             HHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 1111111       122222333344443 34456667776676665 8899999999998888  999999999987


Q ss_pred             hc
Q psy16666        160 CN  161 (167)
Q Consensus       160 ~~  161 (167)
                      ..
T Consensus       366 ~~  367 (390)
T TIGR02718       366 RF  367 (390)
T ss_pred             HH
Confidence            53

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.31  E-value=6.8e-11  Score=86.61  Aligned_cols=131  Identities=22%  Similarity=0.399  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhCCCch-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh
Q psy16666         20 VVIFLEFFAWGLLTMPIISVLNRTFPDHT-FLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT   98 (167)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   98 (167)
                      ...+...+.... ...++|.|.++..+.+ ..+.+...+...+...++.++.|++.||+++|+..........+....+.
T Consensus       213 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  291 (352)
T PF07690_consen  213 IAFFLFFFVFSG-FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLL  291 (352)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHHHHHHHH-hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            333344334434 5778888854444444 46668889999999999999999999999987776666444444333222


Q ss_pred             ---H--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhcc
Q psy16666         99 ---L--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSP  151 (167)
Q Consensus        99 ---~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp  151 (167)
                         .  +..+.....++.|++. ...+...+++.|..|+++|+++.|+.+...++  .+||
T Consensus       292 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  292 LLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             CSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence               2  3455666667778754 46789999999999999999999999988887  5554

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG0254|consensus

Probab=99.30  E-value=1.3e-10  Score=89.98  Aligned_cols=97  Identities=20%  Similarity=0.251  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Q psy16666         51 MNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVAD  127 (167)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~  127 (167)
                      +.+++.+...++..++++++|+++|++|||+.++++.+...++......  +.+.+.++|++.|++. +.......+++|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE  169 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE  169 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence            3489999999999999999999999999999999998888877666554  8899999999999965 455688999999


Q ss_pred             cccchhhHHHHHHHHHHHhh
Q psy16666        128 VTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       128 ~~~~~~r~~~~~~~~~~~~~  147 (167)
                      ..|++.|+...+..+.....
T Consensus       170 iap~~~RG~l~~~~~l~~~~  189 (513)
T KOG0254|consen  170 IAPAHIRGTLVSLYQLFITI  189 (513)
T ss_pred             cCChhhhHHHHHHHHHHHHH
Confidence            99999999999999888777

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.30  E-value=1e-10  Score=88.77  Aligned_cols=127  Identities=16%  Similarity=0.052  Sum_probs=91.0

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh---H---H------
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT---L---D------  100 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~---~------  100 (167)
                      ...+.|.+.++.+.+. .+.+.......++..++.++.|+++||+|||+.+..+..+..++...+.   .   +      
T Consensus       303 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (481)
T TIGR00879       303 IMYYSPTIFENAGVST-DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSS  381 (481)
T ss_pred             hHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccch
Confidence            3556677777766555 5557888888899999999999999999999998887665555444433   1   1      


Q ss_pred             HHHHHHH-HHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        101 TWWFFAM-ISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       101 ~~~~~~~-~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .+..+.. .++.+..+ +..+....+..|.+|+++|+++.++.+...++  +++|.+.+.+.+.
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~  445 (481)
T TIGR00879       382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES  445 (481)
T ss_pred             hHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222222 22223333 34456677889999999999999999998888  8888888877654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.30  E-value=2.8e-10  Score=85.54  Aligned_cols=127  Identities=10%  Similarity=0.085  Sum_probs=90.3

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhh-hhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD-LWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI  110 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  110 (167)
                      ..++|.|.++.++.+ .+.++..+...+.......+.+++.| |++.++.+..+..+..++...+..  +.+...+...+
T Consensus       228 ~~~~p~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l  306 (400)
T PRK11646        228 MLMLPIMVNDIAGSP-SAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICL  306 (400)
T ss_pred             HHhhhhhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            456788888776654 45688877777766666666666665 466666666665555555444332  44444454555


Q ss_pred             HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666        111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN  161 (167)
Q Consensus       111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~  161 (167)
                      .+.+. ...|...+++.|..|+++|++++|+.+...+.  .+||.++|++.+..
T Consensus       307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG  360 (400)
T ss_pred             HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence            66543 45577889999999999999999999998887  89999999998764

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.28  E-value=4.2e-10  Score=84.58  Aligned_cols=148  Identities=8%  Similarity=-0.020  Sum_probs=94.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      +++++...+...+....... .....|.+.++..+.+..+.+.......++..++.+..|+++||+++|+.+..+.....
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~  292 (406)
T PRK15402        214 NRRFVAGALALGLVSLPLLA-WIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMV  292 (406)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34444444443333333222 34456777655444455566877777778888999999999999999998888765554


Q ss_pred             hhHHhhhH-------HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666         92 LPIPLMTL-------DTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN  161 (167)
Q Consensus        92 ~~~~~~~~-------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~  161 (167)
                      ++...+..       +.+++....++.|++.+ ..+..+..... .++++|++..+..+.....  .+|+.+++.+.+..
T Consensus       293 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~  371 (406)
T PRK15402        293 AGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG  371 (406)
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            44333321       34445556667776544 34444444433 3458899999999888777  88888888876543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.28  E-value=3.5e-10  Score=88.09  Aligned_cols=122  Identities=20%  Similarity=0.272  Sum_probs=95.4

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISIS  111 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  111 (167)
                      ...++....+.+..+. . .|+.+...+...+..++.|+++|.+|||..++.+.++..++.+..+.  +...++.+..+.
T Consensus        64 a~~l~~I~~diG~~~~-~-~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~  141 (599)
T PF06609_consen   64 ASILPYINADIGGSDN-W-SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY  141 (599)
T ss_pred             HHHHHHHHHhcCCCcc-c-hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH
Confidence            3445666677776653 3 78888899999999999999999999999999998888887776554  788888999999


Q ss_pred             HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666        112 GVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY  157 (167)
Q Consensus       112 g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l  157 (167)
                      |++.+........++|..|.+.|..+.++.....-.  ..+|.++..+
T Consensus       142 GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~  189 (599)
T PF06609_consen  142 GVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF  189 (599)
T ss_pred             HHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence            997776667777799999999998877766544333  4566665544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.27  E-value=2.3e-10  Score=95.91  Aligned_cols=145  Identities=12%  Similarity=0.030  Sum_probs=102.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHH-HHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFL-MNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      +.++...+..++....... ...++|.|..+..+.+.. ..+++.+...++.+++.+++|+++||+++++++.++.++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~  310 (1146)
T PRK08633        232 RVLWLAIIGLSYFWFISQL-AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLA  310 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHH
Confidence            3344444434443333333 466778777665555445 67999999999999999999999999999888877766655


Q ss_pred             hhHHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666         92 LPIPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus        92 ~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      ++...+..  +.+..++..++.|++. ...+...+++.+..|+++|++++|+.+....+  .+++.+++.+.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        311 LSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444443  5555666667777754 45667889999999999999999999888777  55666665553

>TIGR00901 2A0125 AmpG-related permease

Probab=99.27  E-value=2.6e-10  Score=84.20  Aligned_cols=125  Identities=14%  Similarity=0.054  Sum_probs=88.2

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----cchHHH-HHHHHHHHhhHHhhhH-----HH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-----GRKLFL-LITVFVTCLPIPLMTL-----DT  101 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~-~~~~~~~~~~~~~~~~-----~~  101 (167)
                      ..+.+|.+.++.+.+.. ++++.... .+...+ .+++|+++||+     ||||.+ +.+.+..++.......     +.
T Consensus         7 ~~~~~~~~~~~~g~s~~-~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l   83 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLK-TIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDL   83 (356)
T ss_pred             HHhHHHHHHHHcCCCHH-HHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence            46778889998877765 56877544 455554 89999999998     888864 4454444443322221     34


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        102 WWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       102 ~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      +.+....++.+.. +...++..+++.|++|+|+|+++.++.....++  .++|.+++.+...
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~  145 (356)
T TIGR00901        84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP  145 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4444444555554 345578899999999999999999999888888  7788888877643

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.26  E-value=3.5e-10  Score=84.75  Aligned_cols=148  Identities=10%  Similarity=0.036  Sum_probs=98.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCC---CchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFP---DHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVF   88 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (167)
                      +|+++...+..+.....+.. .....+.|.++..   +.+....+...+...+...++.+..|++.||+|||+.+.++..
T Consensus       214 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~  292 (396)
T TIGR00882       214 QRKFWMFVLYVVGVACVYDV-FDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGT  292 (396)
T ss_pred             CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            44444444433333333222 2345666665543   2333455888888889999999999999999999999888866


Q ss_pred             HHHhhHHhhh--HHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHH-HHHHHhh--hhccchhhHhhhh
Q psy16666         89 VTCLPIPLMT--LDTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGL-VSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        89 ~~~~~~~~~~--~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      +.++....+.  .+.+.+.+..++.|+... .......+..+..|++.+++..+. .+....+  .++|.++|++.+.
T Consensus       293 l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~  370 (396)
T TIGR00882       293 IMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS  370 (396)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            6665444433  366666667777776543 334556677888888888777665 4555555  8999999999874

>TIGR01272 gluP glucose/galactose transporter

Probab=99.26  E-value=8.7e-10  Score=80.28  Aligned_cols=146  Identities=12%  Similarity=0.052  Sum_probs=98.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTF--PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV   89 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (167)
                      ++.++...+..++....... ...+.+.|+++.  .+.+..+.+...+.+..+..++....+++.||+|+|+++.++..+
T Consensus       139 ~~~~~l~~~~~f~yvg~e~~-~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l  217 (310)
T TIGR01272       139 FTHLVLGALGIFVYVGAEVS-AGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFL  217 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            34444444444444434444 578889999754  355566779999999999999999999999999999988777655


Q ss_pred             HHhhHHhhhH-HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         90 TCLPIPLMTL-DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        90 ~~~~~~~~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ..+...+... +.........+.|++ +..+|...+...|..|++ .+++.++.. ...+  +++|.+.|.+.+.
T Consensus       218 ~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~~-~~~~Gg~i~P~l~G~lad~  290 (310)
T TIGR01272       218 AVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGILC-LAIVGGAIVPLLQGSLADC  290 (310)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHH-HHHhcchHHHHHHHHHHHh
Confidence            5554433322 222222344466664 578888899998888754 455666643 3334  8899989988764

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2325|consensus

Probab=99.25  E-value=7.2e-11  Score=89.38  Aligned_cols=153  Identities=19%  Similarity=0.247  Sum_probs=118.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc-hHHHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRT--FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGR-KLFLLIT   86 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~   86 (167)
                      .+.+.++...+..++..+..+. ..+..-.|.++  .+.... .-|++.+...++..++++..|++..|.++ |+.++.+
T Consensus        31 t~wrsi~l~~~~sfl~~v~~sI-~~~s~wpYl~~lD~~A~~~-ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s  108 (488)
T KOG2325|consen   31 TNWRSIYLALLNSFLVAVQFSI-YLTSMWPYLQKLDPTATAT-FFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS  108 (488)
T ss_pred             CchHhHHHHHHHHHHHhhhheE-EEeecchhhhhcCCCCCcc-hhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence            3445566666666777777655 45555556666  444454 55999999999999999999999999985 6677777


Q ss_pred             HHHHHhhHHhh-hH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666         87 VFVTCLPIPLM-TL------DTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY  157 (167)
Q Consensus        87 ~~~~~~~~~~~-~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l  157 (167)
                      .+..+++..+. +.      ..+.++++|++.|++.+......+|+++...+++|.++++....+..+  ++||.++..+
T Consensus       109 ~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  109 FLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence            77777766665 22      467889999999999888899999999999899999999988886666  8999988877


Q ss_pred             hhhcccC
Q psy16666        158 YYCNNKG  164 (167)
Q Consensus       158 ~~~~~~~  164 (167)
                      .....+|
T Consensus       189 ~~Lg~~G  195 (488)
T KOG2325|consen  189 TPLGEKG  195 (488)
T ss_pred             hhhcCCc
Confidence            6665544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.24  E-value=3.4e-10  Score=86.03  Aligned_cols=147  Identities=6%  Similarity=-0.008  Sum_probs=89.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH---
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV---   89 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~---   89 (167)
                      +.++...+..++....... ...++|.|.++..+.+..+.++......+...++.+.+|+++||+++++....+...   
T Consensus       251 ~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~  329 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYG-VLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTL  329 (438)
T ss_pred             chHHHHHHHHHHHHHHHHH-HHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHH
Confidence            3344444444444433323 467889999886666666678888888899999999999999999643322222111   


Q ss_pred             HHhhHHhhhH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhhh
Q psy16666         90 TCLPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYYC  160 (167)
Q Consensus        90 ~~~~~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~~  160 (167)
                      ..+....+..    +.+......+..|.. .+..........|.+|+++|+++.|+.+.....   .+||.+.|.+.+.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~  408 (438)
T TIGR00712       330 VTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF  408 (438)
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh
Confidence            1111111111    223222223333332 122222335678999999999999999877655   5799999988764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.24  E-value=2.4e-10  Score=84.51  Aligned_cols=155  Identities=15%  Similarity=0.145  Sum_probs=118.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV   89 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (167)
                      ++++++...++..++..-+... +...-..|.....+.+..+...+.....+..++++..+|++.||+|.|+++..+.+.
T Consensus       249 ~~~~~i~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi  327 (438)
T COG2270         249 RGRKNLVLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVI  327 (438)
T ss_pred             hcccchHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHH
Confidence            3455677777777777666555 466667777744444445668888889999999999999999999999999888666


Q ss_pred             HHhhHHh-hh-HHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhcccC
Q psy16666         90 TCLPIPL-MT-LDTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCNNKG  164 (167)
Q Consensus        90 ~~~~~~~-~~-~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~~~  164 (167)
                      ..+.... +. .....++++.++.|. .++..+...++..+..|+++-++.+|+++.....  ..||...+.+.+..++-
T Consensus       328 ~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~  407 (438)
T COG2270         328 LSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS  407 (438)
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch
Confidence            5554333 22 244445555566666 5778899999999999999999999999998887  99999999888776654


Q ss_pred             C
Q psy16666        165 R  165 (167)
Q Consensus       165 ~  165 (167)
                      +
T Consensus       408 r  408 (438)
T COG2270         408 R  408 (438)
T ss_pred             h
Confidence            4

>PRK09848 glucuronide transporter; Provisional

Probab=99.24  E-value=8.3e-10  Score=84.13  Aligned_cols=149  Identities=18%  Similarity=0.121  Sum_probs=102.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      ++|++....+..++...+... .....|.|.++..+.+....++......++..++.++++++.||+|+|+.+..+..+.
T Consensus       226 ~n~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~  304 (448)
T PRK09848        226 RNRPLFMLCIGALCVLISTFA-VSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLG  304 (448)
T ss_pred             CCchHHHHHHHHHHHHHHHHH-HhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            456666666666666555433 3455666777666665555444444446778889999999999999999998887666


Q ss_pred             HhhHHhhhH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccch-------hhHHHHHHHHHHHhh--hhccchhhH
Q psy16666         91 CLPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEH-------ERSLAYGLVSSETNQ--YSSPSLTPF  156 (167)
Q Consensus        91 ~~~~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~--~~gp~i~g~  156 (167)
                      .++...+..    +.+......++.|++ +...+...++.+|..|++       +++...|..+....+  .+|+.+.|.
T Consensus       305 ~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~  384 (448)
T PRK09848        305 TCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF  384 (448)
T ss_pred             HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655444332    445555555666764 355677888888888754       358888888888777  888888888


Q ss_pred             hhhh
Q psy16666        157 YYYC  160 (167)
Q Consensus       157 l~~~  160 (167)
                      +.+.
T Consensus       385 ~l~~  388 (448)
T PRK09848        385 ILGL  388 (448)
T ss_pred             HHHH
Confidence            7654

>TIGR00889 2A0110 nucleoside transporter

Probab=99.24  E-value=4.2e-10  Score=85.13  Aligned_cols=137  Identities=14%  Similarity=0.206  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc-hHHHHHHHHHHHhhH
Q psy16666         16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGR-KLFLLITVFVTCLPI   94 (167)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~   94 (167)
                      ..+....++.+..++. ..|.++.++++..+.+..++|++.+...++..++++++|+++||+|| |+++.++.+...+..
T Consensus         5 ~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~   83 (418)
T TIGR00889         5 AKLKFMSFLQWFIWGS-WLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLL   83 (418)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            3566677888888877 78888888877666666788999999999999999999999999965 777777666555544


Q ss_pred             HhhhH--HHHHHHHHHHHHHHHH-HHHHHHHH----HHh----ccccchhhHHHHHHHHHHHhhhhccchhhHh
Q psy16666         95 PLMTL--DTWWFFAMISISGVFA-VTFSVVFA----YVA----DVTEEHERSLAYGLVSSETNQYSSPSLTPFY  157 (167)
Q Consensus        95 ~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~----~~~----~~~~~~~r~~~~~~~~~~~~~~~gp~i~g~l  157 (167)
                      .....  +++.++..+++.++.. ...+...+    +..    |..+...|.+..|..    +.++||.++|.+
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~l----G~~ig~~l~g~l  153 (418)
T TIGR00889        84 FFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGTI----GFIAAMWAVSLL  153 (418)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehhH----HHHHHHHHHHHh
Confidence            43333  5666666777666632 33333333    322    333333455555432    115566666654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.23  E-value=3.4e-10  Score=84.01  Aligned_cols=98  Identities=17%  Similarity=0.145  Sum_probs=75.2

Q ss_pred             HHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HH--------HHHHHHHHHHHHHH-HHHHHHHHHHhcc
Q psy16666         60 GFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DT--------WWFFAMISISGVFA-VTFSVVFAYVADV  128 (167)
Q Consensus        60 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~g~~~-~~~~~~~~~~~~~  128 (167)
                      .+...+++++.|+++||+|||+++..+.++..++......  +.        +.+++.++++|++. ...+...+++.|.
T Consensus        45 ~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~  124 (394)
T TIGR00883        45 FLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEY  124 (394)
T ss_pred             HHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhc
Confidence            3444578899999999999999999987777666555443  22        24677788999854 5667888999999


Q ss_pred             ccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666        129 TEEHERSLAYGLVSSETNQ--YSSPSLTPFY  157 (167)
Q Consensus       129 ~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l  157 (167)
                      .|+++|++..+..+....+  .++|.+++.+
T Consensus       125 ~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~  155 (394)
T TIGR00883       125 APPGKRGFYGSFQQVGAPVGLLLAALTVLLL  155 (394)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998887776  6666665544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.22  E-value=1.7e-09  Score=83.43  Aligned_cols=145  Identities=10%  Similarity=0.072  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHH-HHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhh
Q psy16666         15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIM-GIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLP   93 (167)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   93 (167)
                      .+..+...++....... ...+.+.|..+..+.+..+.+... ....++..++.+..|+++||+|+|+.+..+..+.++.
T Consensus       224 ~~~~ll~~~l~~~~~~~-~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~  302 (491)
T PRK11010        224 AWLILLLIVLYKLGDAF-AMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVS  302 (491)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            34333333343333333 345566666544455556678876 4566899999999999999999988776654433332


Q ss_pred             HHh---hhH---HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         94 IPL---MTL---DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        94 ~~~---~~~---~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ...   ...   +.+.+....++..+. +...+...++..+..+++.+++..++.+...++  .+++.+.|++.+.
T Consensus       303 ~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~  378 (491)
T PRK11010        303 NAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA  378 (491)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221   111   233333334444443 334456688888999999999999999888777  6677778888764

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.21  E-value=3.2e-10  Score=85.95  Aligned_cols=149  Identities=18%  Similarity=0.285  Sum_probs=112.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV   89 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (167)
                      .++|++..++...++...+... .....+.|.++..+.+. ..+.......+...++.+++++++||+|+|+.+..+..+
T Consensus       222 ~~nr~~~~l~~~~~~~~~~~~~-~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~  299 (428)
T PF13347_consen  222 FRNRPFRILLLAFFLQWLAFAL-MNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLL  299 (428)
T ss_pred             cccchHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHH
Confidence            4677888888888887777655 56677777777666664 447888888999999999999999999999999998777


Q ss_pred             HHhhHHhhhH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchh-------hHHHHHHHHHHHhh--hhccchhh
Q psy16666         90 TCLPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHE-------RSLAYGLVSSETNQ--YSSPSLTP  155 (167)
Q Consensus        90 ~~~~~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~--~~gp~i~g  155 (167)
                      .++....+..    +.+.+++..++.|++ +..+....++++|..+.++       .|...|..+....+  .+++.+.|
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g  379 (428)
T PF13347_consen  300 AALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG  379 (428)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence            7665554332    667777777888875 4566788999999887432       36666666666666  78888888


Q ss_pred             Hhhhh
Q psy16666        156 FYYYC  160 (167)
Q Consensus       156 ~l~~~  160 (167)
                      .+.+.
T Consensus       380 ~~l~~  384 (428)
T PF13347_consen  380 LLLAL  384 (428)
T ss_pred             HHHHH
Confidence            77654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.20  E-value=2.9e-09  Score=79.52  Aligned_cols=125  Identities=13%  Similarity=-0.017  Sum_probs=80.4

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh---HHHHHHHHHHHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT---LDTWWFFAMISI  110 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  110 (167)
                      ..+++.+.++..+.+..+.++..+...++..++.++.|++.||+|+|+.+..+..+..++...+.   .+.+...+..++
T Consensus       219 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  298 (382)
T PRK10091        219 FSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFI  298 (382)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            44556666654455556779999999999999999999999999999988877665555443322   233333343344


Q ss_pred             HHHH-HHHHHHHH-HHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        111 SGVF-AVTFSVVF-AYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       111 ~g~~-~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .+.+ .+..++.. ....+..+++.++.+.+  +....+  .+||.++|++.+.
T Consensus       299 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~Gp~~~G~l~~~  350 (382)
T PRK10091        299 CCAGLFALSAPLQILLLQNAKGGELLGAAGG--QIAFNLGSAIGAYCGGMMLTL  350 (382)
T ss_pred             HHHHHHhhhHHHHHHHHHhCCcchHHHHHHH--HHHHHHHHHHHHHHhHHHHHc
Confidence            4432 23333333 34455555555655533  444455  8999999998874

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.20  E-value=1.1e-09  Score=81.51  Aligned_cols=142  Identities=8%  Similarity=0.168  Sum_probs=87.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcch---HHHHH-H
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRK---LFLLI-T   86 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---~~~~~-~   86 (167)
                      +++.++.+.+..++....... ...++|.|+++.+. +.. .+.......+...++   .++++||..||   +.... .
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~-~~~wlp~~L~~~g~-s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~  263 (368)
T TIGR00903       190 GRKDLWIIGAILGFGVALFDN-LAIWLEAALRPAGL-EDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAA  263 (368)
T ss_pred             cChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCC-ChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHH
Confidence            345566666666666665544 57889999987653 333 355555555544444   57778876543   33222 2


Q ss_pred             HHHHHhhHHhhhH--HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666         87 VFVTCLPIPLMTL--DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus        87 ~~~~~~~~~~~~~--~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      ....++....+..  +.+..+....+.+++ ....+..+++.+|.+|++.|+++.|+.+...++  ..+|.+.+.+.
T Consensus       264 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       264 ALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence            3323333323222  333333333444443 345567889999999999999999999998888  68888777665

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG0569|consensus

Probab=99.19  E-value=3.2e-09  Score=80.88  Aligned_cols=96  Identities=22%  Similarity=0.218  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-----HHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy16666         52 NGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-----DTWWFFAMISISGVFA-VTFSVVFAYV  125 (167)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~  125 (167)
                      .+.+.+++.++.++|+...+.++||+|||..+.++.+...++..++..     ++..++++|++.|+.. ........++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            366778899999999999999999999999988886666555444332     6788899999999865 5667889999


Q ss_pred             hccccchhhHHHHHHHHHHHhh
Q psy16666        126 ADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       126 ~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      .|..|.+.||....+.+....+
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~  163 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVI  163 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHH
Confidence            9999999999999888877776

>TIGR00898 2A0119 cation transport protein

Probab=99.19  E-value=1.9e-09  Score=83.16  Aligned_cols=99  Identities=20%  Similarity=0.311  Sum_probs=74.0

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH---H-HHHHHHHHHHHHH-HHHHHHHHHHHHhccccc
Q psy16666         57 GIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL---D-TWWFFAMISISGV-FAVTFSVVFAYVADVTEE  131 (167)
Q Consensus        57 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~  131 (167)
                      ....+...++.+..+++.||+|||+.+..+.++.+++...+..   . .+......++.++ ....++..+.+..|.+|+
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  441 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT  441 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence            4456777888899999999999999998887766665544432   1 1333333344444 345667888999999999


Q ss_pred             hhhHHHHHHHHHHHhh--hhccchhh
Q psy16666        132 HERSLAYGLVSSETNQ--YSSPSLTP  155 (167)
Q Consensus       132 ~~r~~~~~~~~~~~~~--~~gp~i~g  155 (167)
                      +.|+++.|+.+....+  +++|.+.+
T Consensus       442 ~~r~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       442 VVRNLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             HHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence            9999999999988877  88888877

>PRK10133 L-fucose transporter; Provisional

Probab=99.18  E-value=2.2e-09  Score=81.69  Aligned_cols=147  Identities=7%  Similarity=-0.018  Sum_probs=97.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHH-hhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLN-RTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      +|.++...+..++....... ...+++.|. ++..+.+..+.++......++..++++..|++.||+|+|+++..+..+.
T Consensus       257 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~  335 (438)
T PRK10133        257 IRHWRWAVLAQFCYVGAQTA-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIA  335 (438)
T ss_pred             CchHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            34444444444444433332 345667774 5555666677899999999999999999999999999999988775554


Q ss_pred             HhhHHhhhH-HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh-hhccchhhHhhhh
Q psy16666         91 CLPIPLMTL-DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ-YSSPSLTPFYYYC  160 (167)
Q Consensus        91 ~~~~~~~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~gp~i~g~l~~~  160 (167)
                      .+....... +....+....+.|++ +..+|..++...|..|++ .+.+.++....... .++|.+.|.+.+.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~~~~g~~~~~~i~G~l~~~  407 (438)
T PRK10133        336 MALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMGFVSDA  407 (438)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhHHhccchHHHHHHHHHHHh
Confidence            443333222 112223445667774 567899999999988654 56777766543333 7788888877654

>PRK10054 putative transporter; Provisional

Probab=99.18  E-value=9.9e-10  Score=82.49  Aligned_cols=151  Identities=7%  Similarity=-0.018  Sum_probs=100.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTF--PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVF   88 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (167)
                      ++|+++......++....... .....+.|..+.  ...+....+.......+......+..|++.||.++|+.+..+..
T Consensus       204 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~  282 (395)
T PRK10054        204 QDKALLWFTCSGFLASFVSGA-FASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTL  282 (395)
T ss_pred             cCceehHHHHHHHHHHHHHHH-hhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHH
Confidence            345555555555554444333 233444444322  22334455777777777777888899999999999999888866


Q ss_pred             HHHhhHHhhh---HHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh-hhccchhhHhhhhcc
Q psy16666         89 VTCLPIPLMT---LDTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ-YSSPSLTPFYYYCNN  162 (167)
Q Consensus        89 ~~~~~~~~~~---~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~gp~i~g~l~~~~~  162 (167)
                      +..++...+.   .+.+.+.+...+.+++.+ ..|...+.+.|..|++.|+++.+..+...-. .+||.++|.+.+...
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~Gp~~~G~l~~~~g  361 (395)
T PRK10054        283 CFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSLGWLGAAINPLVSGVILTTLP  361 (395)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6655544433   244445556667776543 4567788999999999999998876543323 899999999987653

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.18  E-value=3.3e-09  Score=78.84  Aligned_cols=120  Identities=13%  Similarity=0.149  Sum_probs=81.9

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-------HHHHHHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-------DTWWFFA  106 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-------~~~~~~~  106 (167)
                      ..+.|.+.++..+.+..+.+.+.+...++..++.++.|++.||+|+|+.+..+.....++...+..       +.+....
T Consensus       226 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (385)
T TIGR00710       226 FSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIG  305 (385)
T ss_pred             HHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            455677776555555567789999999999999999999999999999887775555544333321       1222333


Q ss_pred             HHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchh
Q psy16666        107 MISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLT  154 (167)
Q Consensus       107 ~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~  154 (167)
                      ...+.|++ +...+.......|..| ++|+++.++.+.....   ..+|.++
T Consensus       306 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       306 PMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556664 3456677788888876 5789999988876554   4444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.17  E-value=6.6e-10  Score=93.33  Aligned_cols=146  Identities=10%  Similarity=0.057  Sum_probs=103.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      ++.++...+..++..+.... ...++|.|.++..+.+..+.+++.+...++..++.+..|+++||.++++.+..+.++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~  302 (1140)
T PRK06814        224 DKRIWLAILGISWFWLVGAV-VLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMG  302 (1140)
T ss_pred             CchHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHH
Confidence            44555555555555444434 46678999887766666677999999999999999999999988776665444432222


Q ss_pred             hhHH--hhh--------------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh-
Q psy16666         92 LPIP--LMT--------------------LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ-  147 (167)
Q Consensus        92 ~~~~--~~~--------------------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-  147 (167)
                      +...  .+.                    .+.+.+.+..++.|++. ...+...+++.+.+|+++||+++|..+....+ 
T Consensus       303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~  382 (1140)
T PRK06814        303 LFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAF  382 (1140)
T ss_pred             HHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHH
Confidence            2111  111                    24455566667777754 45668899999999999999999999988777 


Q ss_pred             -hhccchhhHhh
Q psy16666        148 -YSSPSLTPFYY  158 (167)
Q Consensus       148 -~~gp~i~g~l~  158 (167)
                       .+|++++|.+.
T Consensus       383 ~~ig~~~~g~l~  394 (1140)
T PRK06814        383 MVAGTIILALLQ  394 (1140)
T ss_pred             HHHHHHHHHHHH
Confidence             78888888775

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.16  E-value=6.3e-09  Score=78.15  Aligned_cols=147  Identities=12%  Similarity=0.020  Sum_probs=92.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHH-HHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPII-SVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV   89 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (167)
                      ++|.++...+..++....... ...++ |.+.++.+.+ ..+.+.......++..++..+.+++.||.+++..+......
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~g~s-~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~  291 (394)
T PRK10213        214 QRPGVMAGMIAIFMSFAGQFA-FFTYIRPVYMNLAGFG-VDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVL  291 (394)
T ss_pred             cCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            345555544443343333222 23444 6666655444 45668888999999999999999999996544433333322


Q ss_pred             HHhhHHh--hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         90 TCLPIPL--MTLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        90 ~~~~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ......+  ...+.+......++.|++. ...+..++++.+..| +++++..+......++  .+||.++|.+.+.
T Consensus       292 ~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~  366 (394)
T PRK10213        292 AVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN  366 (394)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2222222  2235566666667778754 455677778888887 4456777766666666  8999999999864

>PRK09669 putative symporter YagG; Provisional

Probab=99.15  E-value=3.5e-09  Score=80.63  Aligned_cols=149  Identities=11%  Similarity=0.053  Sum_probs=95.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      ++++++.++...++....... .....+.|.+...+.+ +..+.......+...++.+++++++||+|+|+.+..+....
T Consensus       227 ~n~~~~~l~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~  304 (444)
T PRK09669        227 GNSQWRIMFIFNVVLLTAVVT-RGGATLYYVNYVLLRP-DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAF  304 (444)
T ss_pred             CCchHHHHHHHHHHHHHHHHH-HhhhhheeeeeecCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            456666665555555444433 2333333444433333 34355666667888889999999999999999988775544


Q ss_pred             HhhHH-hhh---HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchh-------hHHHHHHHHHHHhh--hhccchhhH
Q psy16666         91 CLPIP-LMT---LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHE-------RSLAYGLVSSETNQ--YSSPSLTPF  156 (167)
Q Consensus        91 ~~~~~-~~~---~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~--~~gp~i~g~  156 (167)
                      .+... .+.   .+.+.+.+..++.|++ +...+..+++++|..|.++       .+...+..+.+..+  .+||.++|.
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~  384 (444)
T PRK09669        305 VILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW  384 (444)
T ss_pred             HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43222 211   2555566666777775 4566788999999886322       34556777777677  899999998


Q ss_pred             hhhhc
Q psy16666        157 YYYCN  161 (167)
Q Consensus       157 l~~~~  161 (167)
                      +++..
T Consensus       385 ll~~~  389 (444)
T PRK09669        385 ILAWV  389 (444)
T ss_pred             HHHHc
Confidence            87643

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.14  E-value=1.3e-09  Score=80.52  Aligned_cols=149  Identities=19%  Similarity=0.159  Sum_probs=106.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV   89 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (167)
                      .++++.|.+++.++..+-++.. ...++|.|.++..+.+..+++...+.+.+...+..+.+|+++||+|.+|++......
T Consensus       215 ~~~~~~W~lsllY~~tFG~Fvg-fs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~  293 (417)
T COG2223         215 FSNKDTWLLSLLYFATFGGFVG-FSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVG  293 (417)
T ss_pred             hcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHH
Confidence            4577888888887777766644 588899999888777777878999999999999999999999999999998888666


Q ss_pred             HHhhHHhhhH---------HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666         90 TCLPIPLMTL---------DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY  157 (167)
Q Consensus        90 ~~~~~~~~~~---------~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l  157 (167)
                      ++++......         +....+...+..+.+. ......+.+++.++|+ +-+.+.|+.....++  .+-|..-|..
T Consensus       294 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~  372 (417)
T COG2223         294 MALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVS  372 (417)
T ss_pred             HHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHH
Confidence            6665444332         2333333333334433 3445677778888765 568888888888777  4555555555


Q ss_pred             hhh
Q psy16666        158 YYC  160 (167)
Q Consensus       158 ~~~  160 (167)
                      .+.
T Consensus       373 ~~~  375 (417)
T COG2223         373 LDL  375 (417)
T ss_pred             HHh
Confidence            443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.14  E-value=6.3e-09  Score=78.14  Aligned_cols=124  Identities=10%  Similarity=-0.008  Sum_probs=88.7

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISIS  111 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  111 (167)
                      ...+|.+.++..+.+..+.|+..+...++..++++..+++.||.++|+++..+... .+....+.  .+.+......++.
T Consensus       225 ~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~  303 (393)
T PRK11195        225 RFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILI  303 (393)
T ss_pred             HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHH
Confidence            44556666666566667789999999999999999999999999988877776433 22222222  2455555556677


Q ss_pred             HHHH-HHHHHHHHHHhccccchh-hHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        112 GVFA-VTFSVVFAYVADVTEEHE-RSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       112 g~~~-~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      |++. ...++.++.+.|..|+|. ++++.++.+...++  .++..+.+.+.
T Consensus       304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            7754 345677788888766654 79999999988887  77777776553

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.13  E-value=5.5e-09  Score=78.91  Aligned_cols=149  Identities=10%  Similarity=-0.022  Sum_probs=97.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFP-DHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV   89 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (167)
                      ++|+++..++..++....... ...+++.|.++.. +.+....+...+.......++.+..+++.||+++|+++.++...
T Consensus       230 ~~~~~~~~~l~~f~yvg~e~~-~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~  308 (410)
T TIGR00885       230 RIRHYREGVIAQFFYVGVQIM-CWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAII  308 (410)
T ss_pred             hChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            345555555555555444333 4677888887643 23333334455666678889999999999999999988777666


Q ss_pred             HHhhHHhhhH-HHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhhccchhhHhhhh
Q psy16666         90 TCLPIPLMTL-DTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQYSSPSLTPFYYYC  160 (167)
Q Consensus        90 ~~~~~~~~~~-~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~gp~i~g~l~~~  160 (167)
                      ..+....... +.........+.|+ .+..+|..++...+..+++.+....++.....+.++.|.+.|++.+.
T Consensus       309 ~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~~Gga~~p~l~G~~~d~  381 (410)
T TIGR00885       309 GMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAIIGGGIVPPLQGFIIDM  381 (410)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhccchHHHHHHHHHHH
Confidence            6555444433 22223344445555 56788999999999998776544555544432228999999999874

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.13  E-value=6.1e-10  Score=83.24  Aligned_cols=150  Identities=19%  Similarity=0.323  Sum_probs=90.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHH-HHHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLF-LLITVF   88 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~   88 (167)
                      .++++.+......++.++.++. ..|++|.++++..+.+..++|.+.++..+...+.+|+.|.++||.|.||- +.....
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi-~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~   82 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGI-FLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAI   82 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHH-HHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHH
Confidence            4677888888888888888877 79999999987656666788999999999999999999999999995544 333222


Q ss_pred             HHHhhHHhh--hH------HHHH-HHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhH
Q psy16666         89 VTCLPIPLM--TL------DTWW-FFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPF  156 (167)
Q Consensus        89 ~~~~~~~~~--~~------~~~~-~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~  156 (167)
                      +.....+.+  ..      +.+. .++..+..++ ..+..|..-+++.+....  .+.-.|-.....++  +++..++|.
T Consensus        83 l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~--~~feYG~~R~wGSig~ai~s~~~G~  160 (412)
T PF01306_consen   83 LLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR--NGFEYGRARMWGSIGFAIASLLAGI  160 (412)
T ss_dssp             HHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH--HSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH--hcCCcchHHHHhhHHHHHHHHHhhe
Confidence            222222211  11      2111 1111122232 334556666666555422  22333333333334  556677777


Q ss_pred             hhhhcc
Q psy16666        157 YYYCNN  162 (167)
Q Consensus       157 l~~~~~  162 (167)
                      +.+.++
T Consensus       161 L~~i~p  166 (412)
T PF01306_consen  161 LFNINP  166 (412)
T ss_dssp             HHHHHH
T ss_pred             eeeeCc
Confidence            665443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.13  E-value=3.6e-09  Score=81.27  Aligned_cols=148  Identities=9%  Similarity=0.011  Sum_probs=97.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      ++|.++.++...++....... .....+.|.+...+.+ ...+.+.+...+..+++.+++++++||+|+|+.+..+..+.
T Consensus       229 ~n~~~~~ll~~~~~~~~~~~~-~~~~~~y~~~y~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~  306 (473)
T PRK10429        229 KNDQLSCLLGMALAYNIASNI-INGFAIYYFTYVIGDA-DLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFP  306 (473)
T ss_pred             cCHHHHHHHHHHHHHHHHHHH-HhhheeeEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            556666666666666655433 4555555555554444 34477777777889999999999999999999988776554


Q ss_pred             HhhHHhhh------H-HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccc-------hhhHHHHHHHHHHHhh--hhccch
Q psy16666         91 CLPIPLMT------L-DTWWFFAMISISGVF-AVTFSVVFAYVADVTEE-------HERSLAYGLVSSETNQ--YSSPSL  153 (167)
Q Consensus        91 ~~~~~~~~------~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~--~~gp~i  153 (167)
                      +++...+.      . +.+.+++..++.|+. +...+...++++|..|.       +..|...|.......+  .+|+.+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i  386 (473)
T PRK10429        307 VLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF  386 (473)
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence            43322211      1 344555555666664 45567788899998663       2234466766666666  889999


Q ss_pred             hhHhhhh
Q psy16666        154 TPFYYYC  160 (167)
Q Consensus       154 ~g~l~~~  160 (167)
                      .|++.+.
T Consensus       387 ~g~~l~~  393 (473)
T PRK10429        387 IGVVLGL  393 (473)
T ss_pred             HHHHHHH
Confidence            9988754

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.12  E-value=4.3e-09  Score=78.05  Aligned_cols=147  Identities=10%  Similarity=0.020  Sum_probs=107.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh--cchHHHHHH-H
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW--GRKLFLLIT-V   87 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~-~   87 (167)
                      +||.+|.+.+..++.+..=.. +..+.|.|+.|..+.+...+++..+.+..+...+.+++|+++||.  |||...-+. .
T Consensus       250 ~Nk~iW~la~a~vfvYivR~g-i~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~  328 (448)
T COG2271         250 KNKLIWLLALANVFVYVVRYG-INDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFM  328 (448)
T ss_pred             cChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHH
Confidence            577888888887777666333 688999999999998888999999999999999999999999996  566554333 3


Q ss_pred             HHHHhhHHhhhH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhh
Q psy16666         88 FVTCLPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYY  158 (167)
Q Consensus        88 ~~~~~~~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~  158 (167)
                      +...++...+..    +++...++.+..|+. -+..-.......|..|++--|++.|+...+..+   +.+...-|++.
T Consensus       329 ~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~  407 (448)
T COG2271         329 LLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIA  407 (448)
T ss_pred             HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeE
Confidence            333333333322    446666666777764 355567777889999999999999998887776   44444444443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.10  E-value=3e-09  Score=78.62  Aligned_cols=133  Identities=20%  Similarity=0.210  Sum_probs=84.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL   92 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   92 (167)
                      ++++...+..+........ ...+.|.|.++..+.+..+.+...+...+...++.+++|+++||+|||+.+..+......
T Consensus       225 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~  303 (366)
T TIGR00886       225 RHTWILALLYSVTFGSFLG-VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAM  303 (366)
T ss_pred             cchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHH
Confidence            3444444444443333323 466778888776565566778888889999999999999999999998877666444433


Q ss_pred             hHHhhh--H----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666         93 PIPLMT--L----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus        93 ~~~~~~--~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      +...+.  .    +.+..+....+.++. +...+...+.+.|..| ++++++.|+.+...++
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~  364 (366)
T TIGR00886       304 GAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNL  364 (366)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccC
Confidence            332222  1    233333333333332 3344566777888876 6899999998776543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.10  E-value=1.2e-08  Score=75.85  Aligned_cols=110  Identities=12%  Similarity=0.059  Sum_probs=70.4

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH-h--hhH---HHHHHHHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP-L--MTL---DTWWFFAM  107 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~--~~~---~~~~~~~~  107 (167)
                      ....|.+..+..+.+..+.+...+...+...++.++.|++.||+|||+.+..+.....+... .  ...   +.+...+.
T Consensus       214 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (377)
T PRK11102        214 LTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVG  293 (377)
T ss_pred             HHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            44455555554444456779999999999999999999999999999988877554332211 1  111   23333333


Q ss_pred             HHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHH
Q psy16666        108 ISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSE  144 (167)
Q Consensus       108 ~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  144 (167)
                      ..+.+. .+...+.....+.|..| ++|+++.+..+..
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~  330 (377)
T PRK11102        294 VAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTL  330 (377)
T ss_pred             HHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHH
Confidence            333222 23334455667778765 7889999887654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.09  E-value=7e-10  Score=83.66  Aligned_cols=150  Identities=13%  Similarity=0.112  Sum_probs=111.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCC----chHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-cchHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPD----HTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-GRKLFLL   84 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~   84 (167)
                      ++.+.++.+....+...+++.. ....+..|+.....    .+..++.-+.+.+..-.-....++|+++||+ |+|+.+.
T Consensus        18 ~~Pr~l~~if~vE~WERFsyYG-mraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          18 GQPRGLYLIFFVELWERFSYYG-MRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CCCchHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            4567788888889999999866 36666666654444    4444545566666666677889999999995 9999999


Q ss_pred             HHHHHHHhhHHhhhHH----HHHHHHHHHHHHHHHHHH-HHHHHHHhccccchh--hHHHHHHHHHHHhh--hhccchhh
Q psy16666         85 ITVFVTCLPIPLMTLD----TWWFFAMISISGVFAVTF-SVVFAYVADVTEEHE--RSLAYGLVSSETNQ--YSSPSLTP  155 (167)
Q Consensus        85 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~--~~gp~i~g  155 (167)
                      .+.++.+++...++.+    ...+.++..+.+++.+.. +...+++.|++|+++  |..++++++...++  .++|.+.+
T Consensus        97 lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~  176 (498)
T COG3104          97 LGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITG  176 (498)
T ss_pred             HHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHH
Confidence            9999888888776643    456666776666766544 688899999998643  67778888888777  88888888


Q ss_pred             Hhhhh
Q psy16666        156 FYYYC  160 (167)
Q Consensus       156 ~l~~~  160 (167)
                      ++.+.
T Consensus       177 ~~~~~  181 (498)
T COG3104         177 LLAIN  181 (498)
T ss_pred             HHHHh
Confidence            77654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.08  E-value=5.3e-09  Score=80.42  Aligned_cols=124  Identities=18%  Similarity=0.184  Sum_probs=76.6

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcch-----H--HHHHHHHHHHhhHHhhhH--HHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRK-----L--FLLITVFVTCLPIPLMTL--DTWW  103 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~--~~~~~~~~~~~~~~~~~~--~~~~  103 (167)
                      ...++|.|..+..+.+....+...+...++..++.+++|+++||++||     +  .......+..+....+..  +.+.
T Consensus       271 ~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~  350 (476)
T PLN00028        271 MDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGA  350 (476)
T ss_pred             HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            355678887665555556678898999999999999999999999865     1  222222222222222222  3333


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhhccchhhHhhh
Q psy16666        104 FFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQYSSPSLTPFYYY  159 (167)
Q Consensus       104 ~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~gp~i~g~l~~  159 (167)
                      .....++.++. ....+...++..|.. +++|++..|+.+...+  +|+.+++++..
T Consensus       351 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~--lg~~i~~~l~~  404 (476)
T PLN00028        351 AIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGN--VGAVLTQLLFF  404 (476)
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhcccc--HHHHHHHHHHH
Confidence            33334444442 334445666677765 4689999998755444  46666666654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.07  E-value=1.5e-08  Score=77.29  Aligned_cols=147  Identities=14%  Similarity=0.100  Sum_probs=85.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      |+++.|.+.+.++..+..+.. ...++|.|.++.....  ..........+...+..|++|+++||+|+|+++.++....
T Consensus       250 k~~~~Wllslly~~tFG~fvg-~s~~lp~~~~~~~~~~--~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~  326 (462)
T PRK15034        250 QRLHLWLLSLLYLATFGSFIG-FSAGFAMLAKTQFPDV--NILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFM  326 (462)
T ss_pred             CCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHH
Confidence            466777777777666655533 3557788876643221  1122334456888899999999999999999998886655


Q ss_pred             HhhHHh----hhH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccc---------------------hhhHHHHHH
Q psy16666         91 CLPIPL----MTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEE---------------------HERSLAYGL  140 (167)
Q Consensus        91 ~~~~~~----~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~---------------------~~r~~~~~~  140 (167)
                      .+....    ...    +.+.+....+...+. +..+...+.++++++|+                     ++-+.+.|+
T Consensus       327 ~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~  406 (462)
T PRK15034        327 AIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGF  406 (462)
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHH
Confidence            443321    111    233333333222222 22344566666666653                     134556666


Q ss_pred             HHHHHhh--hhccchhhHhhhh
Q psy16666        141 VSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       141 ~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .......  .+-|.+-|...+.
T Consensus       407 v~a~G~~Ggf~~p~~~g~~~~~  428 (462)
T PRK15034        407 ISAIGAVGGFFIPQAFGMSLNM  428 (462)
T ss_pred             HHHHHHcccchhhHHHHHHHHH
Confidence            6665555  5555555555443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.07  E-value=9.4e-09  Score=78.78  Aligned_cols=120  Identities=14%  Similarity=0.053  Sum_probs=80.6

Q ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH----HH--HHHHHHH
Q psy16666         35 PIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL----DT--WWFFAMI  108 (167)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~  108 (167)
                      .+.|.+.++.+.+.. ...+......+...++.+++|+++||+|||++++.+..+.+++...+..    +.  .......
T Consensus       292 ~~~p~i~~~~g~~~~-~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~  370 (479)
T PRK10077        292 YYAPEIFKTLGASTD-IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM  370 (479)
T ss_pred             HHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            345666666554433 3355666677888899999999999999999998887766665544331    11  1222233


Q ss_pred             HHHHHH-H-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhh
Q psy16666        109 SISGVF-A-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTP  155 (167)
Q Consensus       109 ~~~g~~-~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g  155 (167)
                      ++.+.. . ...+..+.+++|.+|+++|+++.|+.+....+  ++++.+.+
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p  421 (479)
T PRK10077        371 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFP  421 (479)
T ss_pred             HHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            333332 2 23367889999999999999999998887776  55544443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.06  E-value=6.1e-09  Score=78.90  Aligned_cols=125  Identities=14%  Similarity=0.211  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hcchH-HHHHHHHHHHhhHHhhhH--------
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRKL-FLLITVFVTCLPIPLMTL--------   99 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~~~~~--------   99 (167)
                      ..++++.+..+..+.+..++|.+.+...+...+..|+.|+++||    +|||| .++.+....+++...+..        
T Consensus        18 ~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~   97 (437)
T TIGR00792        18 VSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATG   97 (437)
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcch
Confidence            56677777776666666678999999999999999999999998    67644 566665555544433322        


Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHhccc-cchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666        100 DTWWFFAMISISGVFA-VTFSVVFAYVADVT-EEHERSLAYGLVSSETNQ--YSSPSLTPFY  157 (167)
Q Consensus       100 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~--~~gp~i~g~l  157 (167)
                      ..+++.+..++.+... ....+..++..|.. ++++|++..++.+....+  .+++.+.+.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l  159 (437)
T TIGR00792        98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPL  159 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1234444445555543 34457788889987 468899998887766555  3444443333

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.05  E-value=3.2e-08  Score=72.26  Aligned_cols=153  Identities=9%  Similarity=0.068  Sum_probs=111.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc-chHHHHHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG-RKLFLLITVF   88 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~~   88 (167)
                      .+++.-|.+.+..-+....+.. ...++|.+..|.+.++. +.|...+...+.+...++....+++|.. +|+.......
T Consensus       205 w~~~~aW~vtLfmGlqS~~~Y~-~~~WLP~ili~~G~sa~-~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~  282 (395)
T COG2807         205 WRSPLAWQVTLFMGLQSLLYYI-VIGWLPAILIDRGLSAA-EAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALL  282 (395)
T ss_pred             ccCchhHHHHHHHHhhHHHHHH-HHHHHHHHHHHcCCCHH-HhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            4566677777766777777655 69999999998887775 5699999999999999999999999765 5666555555


Q ss_pred             HHHhhHHhhhH-HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccc-hhhHHHHHHHHHHHhh--hhccchhhHhhhhccc
Q psy16666         89 VTCLPIPLMTL-DTWWFFAMISISGVF-AVTFSVVFAYVADVTEE-HERSLAYGLVSSETNQ--YSSPSLTPFYYYCNNK  163 (167)
Q Consensus        89 ~~~~~~~~~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~~  163 (167)
                      +..++...+.. +....+...++.|++ ++.++.....+.+..++ ++-++-.++.+....+  ++||.+.|++.+..++
T Consensus       283 ~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gs  362 (395)
T COG2807         283 LMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGS  362 (395)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCC
Confidence            55555554433 111111224788885 67889888888887764 4445666777777666  9999999999887655


Q ss_pred             C
Q psy16666        164 G  164 (167)
Q Consensus       164 ~  164 (167)
                      .
T Consensus       363 w  363 (395)
T COG2807         363 W  363 (395)
T ss_pred             h
Confidence            4

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.03  E-value=4.2e-09  Score=81.45  Aligned_cols=103  Identities=17%  Similarity=0.091  Sum_probs=70.1

Q ss_pred             HHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-----HHHHHHHHHHHHH-HH-HHHHHHHHHHHhcccc
Q psy16666         58 IKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-----DTWWFFAMISISG-VF-AVTFSVVFAYVADVTE  130 (167)
Q Consensus        58 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g-~~-~~~~~~~~~~~~~~~~  130 (167)
                      ...++..++.+.+++++||+|||++++.+..+..+....+..     +.........+.. +. .+..+..+.+.+|.+|
T Consensus       343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p  422 (502)
T TIGR00887       343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP  422 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence            344566678889999999999999988776555544333321     1111111111212 22 2344567788899999


Q ss_pred             chhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        131 EHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       131 ~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ++.|+++.++.+....+  +++|.+.+.+.+.
T Consensus       423 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~  454 (502)
T TIGR00887       423 TRYRSTAHGISAASGKAGAIIGQFGFLYLAQH  454 (502)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence            99999999999988887  8888888887763

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG2504|consensus

Probab=99.01  E-value=3e-08  Score=76.66  Aligned_cols=148  Identities=14%  Similarity=0.260  Sum_probs=110.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc--chHHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG--RKLFLLITVFV   89 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~   89 (167)
                      ++.++.+.+...+..+++.. ...++|.|.++.+..+ .+...+.++.++...++.+..|+++|+..  ++.+..++.+.
T Consensus       297 ~~~fl~~~~~~~~~~~g~~~-p~~~l~~~~~~~g~~~-~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~  374 (509)
T KOG2504|consen  297 DPKFLLLALSNLFAYLGFNV-PFVYLPSYAKSLGLSS-NDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLI  374 (509)
T ss_pred             CchHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCh-hhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHH
Confidence            34444455545555555433 4667888888666555 46689999999999999999999999988  34444555666


Q ss_pred             HHhhHHhhhH--HHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666         90 TCLPIPLMTL--DTWWFFAMISISGVFAVTFS-VVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN  161 (167)
Q Consensus        90 ~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~  161 (167)
                      .+++....+.  +++.+....++.|++.+.+. .....+.|+.+.++-..+.|+...+.++  .+||+++|++.+..
T Consensus       375 ~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t  451 (509)
T KOG2504|consen  375 AGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT  451 (509)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc
Confidence            6665544443  77778888889998765544 5556899999999999999999999888  99999999776544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.00  E-value=2.3e-08  Score=76.53  Aligned_cols=146  Identities=10%  Similarity=0.100  Sum_probs=90.7

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHH--------H
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLF--------L   83 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--------~   83 (167)
                      ++.++...+..+........ ...++|.|+++..+.+..+.++..+...++..++.+..|+++||+++|+.        +
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~-~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~  338 (465)
T TIGR00894       260 SLPVWAIWFAIFGHFWLYTI-LPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKI  338 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            34556566656666555544 57788999887666666777999999999999999999999999764421        1


Q ss_pred             HHHHHHH--HhhHHhhhH---HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhh
Q psy16666         84 LITVFVT--CLPIPLMTL---DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTP  155 (167)
Q Consensus        84 ~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g  155 (167)
                      ..+....  .+.......   +.+..++...+.+... ...+.......|..|+ .++.+.++.+....+  .++|.+.|
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g  417 (465)
T TIGR00894       339 FNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAG  417 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            1111111  111111111   2233333333333332 3334455556677655 799999999988887  77777777


Q ss_pred             Hhhh
Q psy16666        156 FYYY  159 (167)
Q Consensus       156 ~l~~  159 (167)
                      .+.+
T Consensus       418 ~~~~  421 (465)
T TIGR00894       418 NILS  421 (465)
T ss_pred             eeeC
Confidence            7654

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.00  E-value=7.2e-08  Score=72.55  Aligned_cols=143  Identities=12%  Similarity=0.059  Sum_probs=77.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHH-HHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKG-FLSFLSAPLIGALSDLWGRKLFLLITVFVTC   91 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (167)
                      |.++..++..++....... ...+.+.+..+..+.+..+.+++..... .+..++.+.+|++.||+|+|+.+..+.....
T Consensus       209 ~~~~~~l~~~~l~~~~~~~-~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~  287 (402)
T PRK11902        209 RGAWALLLLIVLYKLGDAF-AGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQA  287 (402)
T ss_pred             cCHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3344444443443333222 1223333444433444556688775544 4688999999999999999988776654443


Q ss_pred             hhHHhh---hH---HHHHHHHHHHH----HHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666         92 LPIPLM---TL---DTWWFFAMISI----SGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus        92 ~~~~~~---~~---~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      +....+   ..   +.+.+.....+    .|+. +...+....++.+..|.++++...    ...++  ..++.++|.+.
T Consensus       288 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~G~l~  363 (402)
T PRK11902        288 VSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLS----ALASVGRVYVGPTSGYLV  363 (402)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            332211   11   33444444333    2332 234557777888888876655433    23233  33445788777


Q ss_pred             hh
Q psy16666        159 YC  160 (167)
Q Consensus       159 ~~  160 (167)
                      +.
T Consensus       364 ~~  365 (402)
T PRK11902        364 EA  365 (402)
T ss_pred             HH
Confidence            54

>PRK11043 putative transporter; Provisional

Probab=98.99  E-value=7.4e-08  Score=72.33  Aligned_cols=124  Identities=10%  Similarity=0.016  Sum_probs=81.4

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH---hhh----HHHHHHHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP---LMT----LDTWWFFA  106 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~---~~~----~~~~~~~~  106 (167)
                      ..+.|.+.++.+. +..+.++......++..++....+++.||+++|+..........+...   ...    .+.+..++
T Consensus       223 ~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (401)
T PRK11043        223 LTGSPFILEQMGY-SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLI  301 (401)
T ss_pred             HHHhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence            5567778777554 445668887888888899999999999999988876554333222211   111    13333334


Q ss_pred             HHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        107 MISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       107 ~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      ...+.++ .+...+...+...|..| ++|+++.++.+.....  ..++.+.|.+.+
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        302 PFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            4445555 34566777777777765 5799999999887555  666666666643

>KOG2816|consensus

Probab=98.97  E-value=1.4e-08  Score=77.43  Aligned_cols=151  Identities=42%  Similarity=0.721  Sum_probs=103.0

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHH---HHHHHHHHhhCCCchHHHHHHHHHH----HHHHHHhhhhhhhhhhhhhcchHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLT---MPIISVLNRTFPDHTFLMNGLIMGI----KGFLSFLSAPLIGALSDLWGRKLF   82 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~l~dr~g~r~~   82 (167)
                      .+....+.+....++..++++...   .+..+.-............+.....    .++..++..+..|.++||+|||..
T Consensus        15 ~~~~~~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~   94 (463)
T KOG2816|consen   15 IRLASMRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVV   94 (463)
T ss_pred             cccchhhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhh
Confidence            344455556666677777664411   2222222222222222222333333    368889999999999999999999


Q ss_pred             HHHHHHHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         83 LLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      +........+..+......|++++..-+.|.....+....++++|...+++|...+|+.+.+...  .++|.+++.+.+.
T Consensus        95 L~~~~~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~  174 (463)
T KOG2816|consen   95 LLLPLFGTILPALCLLFQGYWFFLLLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF  174 (463)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhhcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            99987777776666555445555533344445567789999999999999999999999997777  9999999988765

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.97  E-value=7.5e-08  Score=72.08  Aligned_cols=65  Identities=9%  Similarity=-0.027  Sum_probs=48.5

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT   98 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   98 (167)
                      ..+.|.+.++..+.+..+.+...+...++..++.+..+++.||+|||+.+..+..+..++...+.
T Consensus       223 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~  287 (392)
T PRK10473        223 VNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA  287 (392)
T ss_pred             HHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            44456666554444555678888889999999999999999999999998888666555544433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.96  E-value=4.2e-08  Score=73.85  Aligned_cols=113  Identities=20%  Similarity=0.472  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc-chHHHHHHHHHHHhhH
Q psy16666         16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG-RKLFLLITVFVTCLPI   94 (167)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~~~~~~~~   94 (167)
                      .++....++.++.++. ..|+++.|+++.+ .+..++|.+.+...+..++.++++|.++||.+ +|+.+.+..++.++..
T Consensus         5 ~rLs~~~f~~f~~~G~-~~p~~~~~L~~~G-~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~   82 (400)
T PF03825_consen    5 FRLSLMYFLYFFAYGA-FLPYLPLYLESRG-FSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALAL   82 (400)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Confidence            4566667777888777 7999999999988 55567899999999999999999999999986 5666666655555443


Q ss_pred             HhhhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHhcccc
Q psy16666         95 PLMTL--DTWWFFAMISISGV-FAVTFSVVFAYVADVTE  130 (167)
Q Consensus        95 ~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~  130 (167)
                      .....  +++.++...++..+ .....|...++..+..+
T Consensus        83 ~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~  121 (400)
T PF03825_consen   83 LLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG  121 (400)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            33332  66666655555555 34566777777666654

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.95  E-value=2e-07  Score=68.18  Aligned_cols=119  Identities=16%  Similarity=0.122  Sum_probs=82.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-H
Q psy16666         22 IFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-D  100 (167)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~  100 (167)
                      +.+...+... ..|+.-...++.+..+ .+++.++........+..++.|.++||+|||+..+..+++..+++..-.. +
T Consensus        43 Y~La~~aDWL-QGpY~Y~LY~~yg~~~-~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~  120 (354)
T PF05631_consen   43 YLLAMAADWL-QGPYLYALYESYGFSE-HQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSN  120 (354)
T ss_pred             HHHHHHHHHh-hcchhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccc
Confidence            3444444434 5666555555555555 56789999999999999999999999999999988888877777665443 7


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHH-h----ccccchhhHHHHHHHH
Q psy16666        101 TWWFFAMISISGVFA-VTFSVVFAYV-A----DVTEEHERSLAYGLVS  142 (167)
Q Consensus       101 ~~~~~~~~~~~g~~~-~~~~~~~~~~-~----~~~~~~~r~~~~~~~~  142 (167)
                      ++.+++.|++.|+.. ..+....++. .    +-+|++..+...+...
T Consensus       121 ~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~t  168 (354)
T PF05631_consen  121 YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLAT  168 (354)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            889999999999865 4455555543 2    3345554455554333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.95  E-value=5.8e-08  Score=74.67  Aligned_cols=123  Identities=14%  Similarity=0.232  Sum_probs=84.3

Q ss_pred             HHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhh----hhcc-hHHHHHHHHHHHhhHHhhh
Q psy16666         24 LEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD----LWGR-KLFLLITVFVTCLPIPLMT   98 (167)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~-r~~~~~~~~~~~~~~~~~~   98 (167)
                      ...+.+.. ..++++.|..+..+.+...+|.+..+..+...+..|+.|+++|    |+|| |+.++.+....+++..++.
T Consensus        17 ~~~~~~~~-~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf   95 (473)
T PRK10429         17 GKDFAIGI-VYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF   95 (473)
T ss_pred             HHhHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH
Confidence            33444434 5778888888877777778899999999999999999999999    5697 5555666665555533322


Q ss_pred             H----H----HHHHHHHHHHHHH-HHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHhh
Q psy16666         99 L----D----TWWFFAMISISGV-FAVTFSVVFAYVADVT-EEHERSLAYGLVSSETNQ  147 (167)
Q Consensus        99 ~----~----~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~  147 (167)
                      .    +    .+++++..++... .+....+..++..|+. ++++|.+..+......++
T Consensus        96 ~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~i  154 (473)
T PRK10429         96 SAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASL  154 (473)
T ss_pred             cCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHH
Confidence            1    1    2223333344444 3455668889999999 589999988875544443

>PRK09669 putative symporter YagG; Provisional

Probab=98.94  E-value=5.8e-08  Score=74.03  Aligned_cols=115  Identities=15%  Similarity=0.122  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hcch-HHHHHHHHHHHhhHHh-hhH-------
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRK-LFLLITVFVTCLPIPL-MTL-------   99 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r-~~~~~~~~~~~~~~~~-~~~-------   99 (167)
                      ...+++.|..+..+.+..++|.+..+..+...+..|+.|+++||    +||| +.++.+....++...+ +..       
T Consensus        28 ~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~  107 (444)
T PRK09669         28 VMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATG  107 (444)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcch
Confidence            45667777777666777788999999999999999999999998    6764 4455554444433322 211       


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHhh
Q psy16666        100 DTWWFFAMISISGV-FAVTFSVVFAYVADVT-EEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       100 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~  147 (167)
                      ..++..+..++.+. .+....+..++.+|+. ++++|.+..+.......+
T Consensus       108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~  157 (444)
T PRK09669        108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFI  157 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            12334444444443 4455567889999988 468898887776655555

>KOG2533|consensus

Probab=98.93  E-value=3e-08  Score=76.27  Aligned_cols=114  Identities=14%  Similarity=-0.005  Sum_probs=91.6

Q ss_pred             CchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh--hhHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy16666         46 DHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISISGVF-AVTFSVVF  122 (167)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~-~~~~~~~~  122 (167)
                      +....+.+.+.+++.++++++.++++.+.||++..+.+....+...+...+  ..++++.+++.|++.|++ ++.+|...
T Consensus        77 ~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~  156 (495)
T KOG2533|consen   77 KLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVV  156 (495)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHH
Confidence            344456699999999999999999999999999666665554444332222  234889999999999996 57889999


Q ss_pred             HHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        123 AYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       123 ~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      .+++.++.+++|++.++++++..++  ++|.+++..+.+
T Consensus       157 ~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~  195 (495)
T KOG2533|consen  157 AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK  195 (495)
T ss_pred             HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence            9999999999999999999999888  777777776554

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.93  E-value=2.4e-11  Score=92.40  Aligned_cols=105  Identities=17%  Similarity=0.242  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--H---HHHHHHHHHHHHHHH-HHHHHHHHH
Q psy16666         50 LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--L---DTWWFFAMISISGVF-AVTFSVVFA  123 (167)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~g~~-~~~~~~~~~  123 (167)
                      .+.++..+...++..+++++.|+++||+|||+.+..+..+..++..+..  .   +.+.+.++|++.|++ ++..+....
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~  125 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI  125 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3457888999999999999999999999999999999777776655543  3   578888999999995 456789999


Q ss_pred             HHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666        124 YVADVTEEHERSLAYGLVSSETNQ--YSSPSLT  154 (167)
Q Consensus       124 ~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~  154 (167)
                      ++.|..|+++|++..++.+....+  .++..++
T Consensus       126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~  158 (451)
T PF00083_consen  126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIG  158 (451)
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence            999999999999999988887766  4444443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11462 putative transporter; Provisional

Probab=98.92  E-value=2.1e-07  Score=71.44  Aligned_cols=148  Identities=8%  Similarity=0.037  Sum_probs=83.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      ++|.++.+....++....... .......|.+...+.+. ..+.+.....++.+++.+++++++||+|+|++...+....
T Consensus       226 ~Nk~~~~l~~~~~~~~~~~~~-~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~  303 (460)
T PRK11462        226 QNDQWRIVGLLTIFNILAVCV-RGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALL  303 (460)
T ss_pred             CChHHHHHHHHHHHHHHHHHH-HHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            355555554444444444322 23333333333344333 3356677788888999999999999999998876543332


Q ss_pred             Hh-hHHhhh--H-HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccch-----hhHHH--HHHHHHHHhh--hhccchhhH
Q psy16666         91 CL-PIPLMT--L-DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEH-----ERSLA--YGLVSSETNQ--YSSPSLTPF  156 (167)
Q Consensus        91 ~~-~~~~~~--~-~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~-----~r~~~--~~~~~~~~~~--~~gp~i~g~  156 (167)
                      .+ ....+.  . +.+...+..++.|+.. ...+..++++.|..+.+     +|..+  .+.......+  .+|+.++|.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~  383 (460)
T PRK11462        304 AVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW  383 (460)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 222211  1 2223333445556543 34455677777776622     34333  4444455555  888888888


Q ss_pred             hhhh
Q psy16666        157 YYYC  160 (167)
Q Consensus       157 l~~~  160 (167)
                      ++..
T Consensus       384 iL~~  387 (460)
T PRK11462        384 MLAY  387 (460)
T ss_pred             HHHH
Confidence            8754

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.92  E-value=2.4e-08  Score=57.55  Aligned_cols=68  Identities=24%  Similarity=0.454  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHH
Q psy16666         18 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV   87 (167)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   87 (167)
                      +-...++.+.+.+. ..|++|.|.++.+.+. .++|.+.++..+...+++|++|.++||+++++.+....
T Consensus         5 lk~~yf~~f~~~g~-~~Pfl~~~~~~~Gl~~-~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~   72 (77)
T PF12832_consen    5 LKAFYFFYFAALGC-LYPFLPLYLKQLGLSP-SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS   72 (77)
T ss_pred             HHHHHHHHHHHHHH-HHhhhhHhhhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence            33445666666666 7999999999866555 57799999999999999999999999999888776653

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.91  E-value=1.6e-07  Score=70.40  Aligned_cols=124  Identities=10%  Similarity=0.047  Sum_probs=81.1

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHH-HHHHhhHHhhh----HHHHHHHHHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV-FVTCLPIPLMT----LDTWWFFAMI  108 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~  108 (167)
                      ....+.+.++..+.+..+.++......++..++....+++.||++++....... ....+......    .+.+......
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (394)
T PRK11652        227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPA  306 (394)
T ss_pred             HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            445566776644545556688888888888899999999999998443332222 22212111111    1344455555


Q ss_pred             HHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        109 SISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       109 ~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      ++.+++ +...+...++..|..| ++++++.++.+....+  .+++.+++.+.
T Consensus       307 ~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        307 ALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            666664 4467788888888886 5789999998887777  77887777664

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.90  E-value=2.9e-07  Score=68.95  Aligned_cols=142  Identities=13%  Similarity=0.136  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHH--HHHHHHHHHhhhhhhhh-hhhhhcchHHHHHHHHH-HH
Q psy16666         16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLI--MGIKGFLSFLSAPLIGA-LSDLWGRKLFLLITVFV-TC   91 (167)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~-l~dr~g~r~~~~~~~~~-~~   91 (167)
                      ..+...++.+....+. ..|.+|.++++.+.+. .++|+.  .+...+..++..|++++ ..||+||||..++...+ ..
T Consensus         4 ~~~~~ly~~~g~~~~~-~~p~lp~~l~~~g~~~-~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~   81 (390)
T TIGR02718         4 ITLGLLYLSQGIPIGL-AMDALPTLLREDGAPL-TALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVS   81 (390)
T ss_pred             HHHHHHHHHHHhHHHH-HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHH
Confidence            3344455666666656 7999999999987555 566886  45668888888888854 79999988886555322 11


Q ss_pred             ---hhHHhh--hHH-HHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         92 ---LPIPLM--TLD-TWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        92 ---~~~~~~--~~~-~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                         .....+  ..+ ..+.+.......+. +...+...++..|..++++++...+.......+  .+|+...+++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~  158 (390)
T TIGR02718        82 ACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG  158 (390)
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               111111  112 22333333333333 345567778888888888888777777666555  555555555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG3762|consensus

Probab=98.82  E-value=1.2e-08  Score=77.71  Aligned_cols=137  Identities=12%  Similarity=0.124  Sum_probs=112.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--
Q psy16666         22 IFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--   99 (167)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--   99 (167)
                      ..+...+.+. +..++-.++++.+..+... |......-.+-++.-++.+++.+|+|+-+++..++.+...=+..++.  
T Consensus       380 av~mG~g~~l-v~tFLfWHled~~~~~~Lf-Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~  457 (618)
T KOG3762|consen  380 AVVMGAGVGL-VFTFLFWHLEDLGGIKTLF-GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ  457 (618)
T ss_pred             HHHHHHHHHH-HHHHHHHHHhhcCCcceee-eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc
Confidence            3344444445 6888888899988777655 87777788888899999999999999999999988877775555554  


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhhh
Q psy16666        100 DTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYYC  160 (167)
Q Consensus       100 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~~  160 (167)
                      +.|..+..-+++|+ .+..+.+.-+|+++..||+.|+++.++......-   .+|.+|||.+.+.
T Consensus       458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~  522 (618)
T KOG3762|consen  458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER  522 (618)
T ss_pred             CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee
Confidence            88888888899999 5678899999999999999999999998875444   9999999988754

>KOG0569|consensus

Probab=98.81  E-value=2.2e-07  Score=71.00  Aligned_cols=112  Identities=20%  Similarity=0.172  Sum_probs=78.5

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-----H---HHHH-
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-----D---TWWF-  104 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~---~~~~-  104 (167)
                      ..+.....++.+.+ .+++.++....++...+...++..+.||+|||+.++.+..++.+....+..     +   .|.- 
T Consensus       290 ~~Yst~i~~~aG~~-~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y  368 (485)
T KOG0569|consen  290 FFYSTSIFKTAGFT-PEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSY  368 (485)
T ss_pred             HHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            33444455555544 456678888899999999999999999999999999997777665554432     1   1222 


Q ss_pred             --HHHHHHHHH-HH-HHHHHHHHHHhccccchhhHHHHHHHHHHHh
Q psy16666        105 --FAMISISGV-FA-VTFSVVFAYVADVTEEHERSLAYGLVSSETN  146 (167)
Q Consensus       105 --~~~~~~~g~-~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  146 (167)
                        +.+.++..+ ++ |..|..+-+.+|++|++.|..+.++.....-
T Consensus       369 ~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w  414 (485)
T KOG0569|consen  369 LCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNW  414 (485)
T ss_pred             HHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHH
Confidence              222233333 23 5567889999999999999999987655433

>KOG0252|consensus

Probab=98.80  E-value=1.9e-08  Score=75.48  Aligned_cols=101  Identities=12%  Similarity=0.058  Sum_probs=82.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH---------HHHHHHHHHHHHHHH-HH
Q psy16666         47 HTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL---------DTWWFFAMISISGVF-AV  116 (167)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~-~~  116 (167)
                      .++...+.+..+..++.++++++.|++.||+|||++....+++.+++.++...         -.+++...|++.|++ ++
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG  160 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG  160 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence            34445588889999999999999999999999999998887766665544332         235677788999996 67


Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666        117 TFSVVFAYVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       117 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      -+|...+..+|...++.||+-.+.....++.
T Consensus       161 DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~  191 (538)
T KOG0252|consen  161 DYPLSATIMSESANKKTRGAFIAAVFAMQGF  191 (538)
T ss_pred             CCcchHHHhhhhhhhccccceeEEEEEecch
Confidence            8899999999999999999998887776666

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.73  E-value=3.5e-06  Score=63.40  Aligned_cols=149  Identities=13%  Similarity=0.143  Sum_probs=106.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDH---TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV   87 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   87 (167)
                      +.|++|.+.+........+.. .....|.|......+   +....|.+.+...+...+.-.+..++.+|+|.|+.++++.
T Consensus       218 k~~~fw~~~l~v~g~~~~Y~v-fdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag  296 (412)
T PF01306_consen  218 KMRNFWFFVLFVIGVAAIYDV-FDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAG  296 (412)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHH
Confidence            455666555444333333323 344567676655433   3345688999999999999999999999999999999997


Q ss_pred             HHHHhhHHhhh--HHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHH-HHHhh--hhccchhhHhhhh
Q psy16666         88 FVTCLPIPLMT--LDTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVS-SETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        88 ~~~~~~~~~~~--~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~--~~gp~i~g~l~~~  160 (167)
                      .+..+=+...+  .+.+.+.+...+.++ ..........|+++.+|+|..++...+.. ...++  .+.+.++|.+++.
T Consensus       297 ~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~  375 (412)
T PF01306_consen  297 VIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR  375 (412)
T ss_dssp             HHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh
Confidence            77777655544  478888888899998 45667789999999999999888888753 44555  7778888888764

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.72  E-value=2.8e-06  Score=60.23  Aligned_cols=128  Identities=23%  Similarity=0.263  Sum_probs=91.4

Q ss_pred             HHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HH--HHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTF-LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LD--TWWFFAM  107 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~--~~~~~~~  107 (167)
                      ..+..+.+..+...... ...++..+...+...++.++.|+++||+|||+.+..+......+.....  .+  .+.+...
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (338)
T COG0477          21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLIL  100 (338)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            45667777776665553 3458888999999999999999999999999877777543222222221  13  5677777


Q ss_pred             HHHHHHHH-HHHHHHHHHHhccccc-hhhHHHHHHHHHH-Hhh--hhccchhhHhhhh
Q psy16666        108 ISISGVFA-VTFSVVFAYVADVTEE-HERSLAYGLVSSE-TNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       108 ~~~~g~~~-~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~-~~~--~~gp~i~g~l~~~  160 (167)
                      +...|+.. ...+...+++.|..|+ ++|+...+..... ...  .++|.+++.+...
T Consensus       101 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477         101 RLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788754 5677899999999987 6788888887773 444  7777777666543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.70  E-value=8.6e-07  Score=67.43  Aligned_cols=149  Identities=17%  Similarity=0.189  Sum_probs=101.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      +||++...++...+...+... .......|.+...+.++.+..........+..++.+++.++.+|+|+|++...+.++.
T Consensus       234 ~Nrp~~~~l~~~l~~~~~~~i-~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~  312 (467)
T COG2211         234 KNRPLLLLLLMNLLLFIAFNI-RGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLL  312 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHH-HhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHH
Confidence            567777777766666666544 5666677777766666666667777777778888999999999999999999998877


Q ss_pred             HhhHHhhhH----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchh-----h--HHHHHHHHHHHhh--hhccchhhH
Q psy16666         91 CLPIPLMTL----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHE-----R--SLAYGLVSSETNQ--YSSPSLTPF  156 (167)
Q Consensus        91 ~~~~~~~~~----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~-----r--~~~~~~~~~~~~~--~~gp~i~g~  156 (167)
                      +++...+.+    +.+..++..++.+++. ...+..+++++|..+-++     |  |...+.+..+.=.  +++..+.|+
T Consensus       313 ~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~  392 (467)
T COG2211         313 AVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW  392 (467)
T ss_pred             HHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            776655443    4555566667777754 566788889888876432     2  2333333333333  666666676


Q ss_pred             hhhh
Q psy16666        157 YYYC  160 (167)
Q Consensus       157 l~~~  160 (167)
                      ++..
T Consensus       393 ~L~~  396 (467)
T COG2211         393 ILGA  396 (467)
T ss_pred             HHHH
Confidence            6654

>KOG0253|consensus

Probab=98.70  E-value=1.8e-07  Score=68.83  Aligned_cols=97  Identities=19%  Similarity=0.282  Sum_probs=72.3

Q ss_pred             HHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhh
Q psy16666         58 IKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHER  134 (167)
Q Consensus        58 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r  134 (167)
                      ...+..+.|.++.+++.||+|||+.+..++++..+..+....  +........+..-+ ..+.+...+.|.+|.+|+..|
T Consensus       389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR  468 (528)
T KOG0253|consen  389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR  468 (528)
T ss_pred             HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence            345778899999999999999999999998877776554432  22222222222222 345667788999999999999


Q ss_pred             HHHHHHHHHHHhh--hhccchh
Q psy16666        135 SLAYGLVSSETNQ--YSSPSLT  154 (167)
Q Consensus       135 ~~~~~~~~~~~~~--~~gp~i~  154 (167)
                      +++.|....+..+  ++.|.++
T Consensus       469 atgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  469 ATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             hcchhhhhhHHhhhhhhhhHHH
Confidence            9999999998888  7888776

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.69  E-value=8.6e-07  Score=68.35  Aligned_cols=138  Identities=7%  Similarity=0.104  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhhCCCchH----HHHHHHHHHHHHHHHhhhhhhhh----hhhh-hcchHHH--HHH
Q psy16666         18 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTF----LMNGLIMGIKGFLSFLSAPLIGA----LSDL-WGRKLFL--LIT   86 (167)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~----l~dr-~g~r~~~--~~~   86 (167)
                      +++...+....+.. ..+.++.+.++..+.+.    ...+++.+...+..++.+|+..+    +.|| .+.+...  .++
T Consensus       277 l~~~~~~~~~~~~Q-~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G  355 (475)
T TIGR00924       277 LFLEAVVFWVLYAQ-MPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLG  355 (475)
T ss_pred             HHHHHHHHHHHHHH-hhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence            33333444444444 35556776655322211    11367778888888888877554    4554 2223333  555


Q ss_pred             HHHHHhhHHhhh-----------HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccc
Q psy16666         87 VFVTCLPIPLMT-----------LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPS  152 (167)
Q Consensus        87 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~  152 (167)
                      .++.+++.....           .+.++++...++.+++. ...|..++++.|..|++.|++++|++.....+  .+++.
T Consensus       356 ~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~  435 (475)
T TIGR00924       356 MLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGY  435 (475)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665555544432           37888888889999876 56789999999999999999999999877776  44444


Q ss_pred             hhhH
Q psy16666        153 LTPF  156 (167)
Q Consensus       153 i~g~  156 (167)
                      +...
T Consensus       436 ~~~~  439 (475)
T TIGR00924       436 LATF  439 (475)
T ss_pred             HHHH
Confidence            4443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11462 putative transporter; Provisional

Probab=98.65  E-value=2.9e-06  Score=65.18  Aligned_cols=132  Identities=14%  Similarity=0.073  Sum_probs=88.0

Q ss_pred             HHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hcchHH-HHHHHHHHHhhHHhhh-
Q psy16666         25 EFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRKLF-LLITVFVTCLPIPLMT-   98 (167)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~-~~~~~~~~~~~~~~~~-   98 (167)
                      ....+.. ...++..|..+..+.+...+|.+..+.-+...+..|+.|+++||    +||||. ++++....+++..++. 
T Consensus        21 ~~~~~~~-~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~   99 (460)
T PRK11462         21 SHIIFDN-VMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYS   99 (460)
T ss_pred             hhHHHHH-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHh
Confidence            3344334 45667777777777777788999999999999999999999996    687654 4455444444433322 


Q ss_pred             H---H----HHHHHHHHHHHHH-HHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666         99 L---D----TWWFFAMISISGV-FAVTFSVVFAYVADVTE-EHERSLAYGLVSSETNQ--YSSPSLTPFY  157 (167)
Q Consensus        99 ~---~----~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~--~~gp~i~g~l  157 (167)
                      .   +    ..++.+..++... ......+..++.+|+.+ +|+|.+..++.....++  .+++.+...+
T Consensus       100 ~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~pl  169 (460)
T PRK11462        100 TPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPL  169 (460)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   1    2233333344444 44555688899999988 78999999987776665  4554444333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.64  E-value=1.7e-06  Score=64.17  Aligned_cols=149  Identities=13%  Similarity=0.069  Sum_probs=103.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      ++|.++...+..|+..... ..+..+++.|..+..+.+.++.....+.+..+.++|.....++..|+...+.+.+.....
T Consensus       234 ~~~~~~~gvl~~FlYVG~E-va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~  312 (422)
T COG0738         234 QNKHLRLGVLAIFLYVGAE-VAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIA  312 (422)
T ss_pred             hChHHHHHHHHHHHHHhHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence            4555666666666555554 447889999999977777788899999999999999999999999999888887775555


Q ss_pred             HhhHHhhhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh-hhccchhhHhhhhcc
Q psy16666         91 CLPIPLMTL--DTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ-YSSPSLTPFYYYCNN  162 (167)
Q Consensus        91 ~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~gp~i~g~l~~~~~  162 (167)
                      .+.+.....  +.+. +.+..+.|. .+..+|+..+...+..|++ -..+.++.-+..-- ++-|.+-|++.+..+
T Consensus       313 ill~~~~~l~~g~v~-~~~l~~ig~F~simfPTIfslal~~l~~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g  386 (422)
T COG0738         313 ILLLLAVALIGGVVA-LYALFLIGLFNSIMFPTIFSLALKNLGEH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFG  386 (422)
T ss_pred             HHHHHHHHHhcChHH-HHHHHHHHHHhHHHHHHHHHHHHhccCcc-ccccceeeeeheecchHHHHHHHHHHHhhh
Confidence            444333332  4333 333445555 5678999999999999843 33333333222222 778888888876543

>PRK09848 glucuronide transporter; Provisional

Probab=98.61  E-value=2.7e-06  Score=64.99  Aligned_cols=119  Identities=8%  Similarity=0.052  Sum_probs=74.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh----cchHHH-HHHHHHHHh-hHHh
Q psy16666         23 FLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW----GRKLFL-LITVFVTCL-PIPL   96 (167)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----g~r~~~-~~~~~~~~~-~~~~   96 (167)
                      +........ ..++++.|+++..+.+..++|.+.....+...+..|+.|+++||.    |||+.. ..+.+...+ ....
T Consensus        18 ~~~~~~~~~-~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~   96 (448)
T PRK09848         18 VANNFAFAM-GALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLV   96 (448)
T ss_pred             HHhHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHH
Confidence            344444433 567777788887666777889999999999999999999999996    666644 444332222 2222


Q ss_pred             hhH--------HHHHHHHHHHHHHHH-HHHHHHHHHHHhcccc-chhhHHHHHHHH
Q psy16666         97 MTL--------DTWWFFAMISISGVF-AVTFSVVFAYVADVTE-EHERSLAYGLVS  142 (167)
Q Consensus        97 ~~~--------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~-~~~r~~~~~~~~  142 (167)
                      +..        ..+.......+.+.+ +...++..++..|..+ +++|.+..+.-.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~  152 (448)
T PRK09848         97 FWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARG  152 (448)
T ss_pred             HhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHH
Confidence            211        112223333444543 3445567777777665 467887766554

>KOG2532|consensus

Probab=98.57  E-value=1.9e-06  Score=66.14  Aligned_cols=147  Identities=11%  Similarity=0.143  Sum_probs=101.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcch--------HH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRK--------LF   82 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--------~~   82 (167)
                      +++.+|.+.+..+....+... ...++|.|+++..+.+..+.|+..++..+...+...++|+++||.-+|        +.
T Consensus       256 ts~~vwai~~~~f~~~~~~~~-l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rki  334 (466)
T KOG2532|consen  256 TSPPVWAIWISAFGGNWGFYL-LLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKI  334 (466)
T ss_pred             cCHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHH
Confidence            456778888888888888766 699999999999999999999999999999999999999999987552        11


Q ss_pred             -HHHHHHHHHhhHHhhhH----HHHHHHHHH-HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666         83 -LLITVFVTCLPIPLMTL----DTWWFFAMI-SISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT  154 (167)
Q Consensus        83 -~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~  154 (167)
                       -.++....++.+..+..    +.+..+++. +..++.+...+-...-..|.. |++-+..+|+.+....+  .++|.+.
T Consensus       335 fn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~v  413 (466)
T KOG2532|consen  335 FNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLV  413 (466)
T ss_pred             HHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHhe
Confidence             22234444444444433    222222222 222322222233333333434 56679999999998888  8999999


Q ss_pred             hHhhh
Q psy16666        155 PFYYY  159 (167)
Q Consensus       155 g~l~~  159 (167)
                      |.+..
T Consensus       414 g~~~~  418 (466)
T KOG2532|consen  414 GIIVT  418 (466)
T ss_pred             eeEeC
Confidence            98875

>TIGR00788 fbt folate/biopterin transporter

Probab=98.57  E-value=1.5e-07  Score=72.32  Aligned_cols=117  Identities=13%  Similarity=0.061  Sum_probs=90.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh------------HHHHHHHHHHHHHH
Q psy16666         45 PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT------------LDTWWFFAMISISG  112 (167)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g  112 (167)
                      .+.+..+.|.......++.+++....+++.+|++.|+++.++.++.+++.....            .+.+......++.+
T Consensus       283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~  362 (468)
T TIGR00788       283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE  362 (468)
T ss_pred             CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence            444556779999999999999999999999999999999988776666443321            01222333445666


Q ss_pred             HH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666        113 VF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN  161 (167)
Q Consensus       113 ~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~  161 (167)
                      +. +..+.+...++++..|++++++.+++.++..++  .+++.++|.+.+.-
T Consensus       363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~  414 (468)
T TIGR00788       363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI  414 (468)
T ss_pred             HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            64 345567799999999999999999999999988  89999999887653

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2504|consensus

Probab=98.56  E-value=6.8e-07  Score=69.28  Aligned_cols=121  Identities=20%  Similarity=0.301  Sum_probs=91.1

Q ss_pred             HHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHH-HHHH
Q psy16666         36 IISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMI-SISG  112 (167)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~g  112 (167)
                      +.+.+.++++..+.+ ++++.++......+..|+.+.+.||+|.|.+.+.+.++..+++.+-.+  +.|.+++.. ++.|
T Consensus        68 ~~~~~~~~f~~s~~~-~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G  146 (509)
T KOG2504|consen   68 LFEELMDYFGSSSSQ-IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGG  146 (509)
T ss_pred             hHHHHHHHhCCCccH-HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            456666777766654 699999999999999999999999999999999998888887776544  777776655 6777


Q ss_pred             HHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        113 VFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       113 ~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      ++. ..+.+....+..++ +++|+.+.|+.....++  .+-|.+.-.+.
T Consensus       147 ~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~  194 (509)
T KOG2504|consen  147 LGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLL  194 (509)
T ss_pred             ccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence            754 45557777777766 56799999998887777  33344444443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.55  E-value=2.8e-06  Score=65.45  Aligned_cols=137  Identities=15%  Similarity=0.129  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc-----chHHHHHHHHHH-H
Q psy16666         19 LVVIFLEFFAWGLLTMPIISVLNRT-FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG-----RKLFLLITVFVT-C   91 (167)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~~~~~-~   91 (167)
                      ...++..... +. ....++.++++ .+.+. .+++...+...+...+- +++|.++||++     ||+.+.++.++. .
T Consensus        32 ~~~y~~qGl~-~l-~~~~~~~~l~~~lg~s~-~~i~~~~sl~~lpw~~K-~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~  107 (468)
T TIGR00788        32 LQVLFVKGIA-GL-MRLPLSPMLTDDLGLDG-ARYQRLVGLSSLGWALK-PFAGVMSDTFPLFGYTKRWYLVLSGLLGSA  107 (468)
T ss_pred             HHHHHHhhHH-HH-hhhhhhHHHHHhcCCCH-HHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCccchHHHHHHHHHHHH
Confidence            3345555555 44 34445555554 45555 56677888888888885 55999999997     777777765444 2


Q ss_pred             hhHHhhhH--H-HHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHH---HHHHHHhh--hhccchhhHhhhh
Q psy16666         92 LPIPLMTL--D-TWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYG---LVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        92 ~~~~~~~~--~-~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      +....+..  + .....+..++.+++. .......+++.|..+ |++....+   ......++  .+|+.++|.+.+.
T Consensus       108 ~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~  184 (468)
T TIGR00788       108 ILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK  184 (468)
T ss_pred             HHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333332  2 223333455666654 445688999999988 44444332   33333223  7788888877654

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.54  E-value=5.5e-07  Score=68.38  Aligned_cols=125  Identities=20%  Similarity=0.279  Sum_probs=83.1

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhh----hhcchHHH-HHHHHHHHhhHHhhhH------H--
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD----LWGRKLFL-LITVFVTCLPIPLMTL------D--  100 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~-~~~~~~~~~~~~~~~~------~--  100 (167)
                      ..+++.|..+..+.+...+|.+..+..+...+..|+.|.++|    |+||||.. +.+....+++..++..      +  
T Consensus        21 ~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~  100 (428)
T PF13347_consen   21 SSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT  100 (428)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence            445566666665666677899999999999999999999999    79977654 4555555554443321      1  


Q ss_pred             --HHHHHHHHHHHHH-HHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        101 --TWWFFAMISISGV-FAVTFSVVFAYVADVTE-EHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       101 --~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                        ..+..+..++..+ .+....+..++..|+.+ +|+|.+..+..+....+  .+...+.+.+.
T Consensus       101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~  164 (428)
T PF13347_consen  101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILV  164 (428)
T ss_pred             hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence              1222333333344 34455688999999998 57899988887766555  33444444444

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.52  E-value=2.7e-05  Score=51.03  Aligned_cols=103  Identities=11%  Similarity=0.086  Sum_probs=76.9

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh-HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhh
Q psy16666         57 GIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT-LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHER  134 (167)
Q Consensus        57 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r  134 (167)
                      ++......+.+++.+.+.+++|.|+.++++.+...+....+. .+.+.++.+.++.|++. ..+.....++.+..++++|
T Consensus        44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~  123 (156)
T PF05978_consen   44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETI  123 (156)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHH
Confidence            344455667777788889999999999999777776544433 36677788889999865 5667788899999999999


Q ss_pred             HHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        135 SLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       135 ~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      ++..++.....+.  ++|.++.-.+.+
T Consensus       124 ~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen  124 GRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999987777666  555555544443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.51  E-value=3e-06  Score=59.74  Aligned_cols=112  Identities=14%  Similarity=0.125  Sum_probs=77.2

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH---------HHHHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL---------DTWWF  104 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---------~~~~~  104 (167)
                      .+.+..-+++..+.+..+...+.....++..+ .++.|.+.||+|++.++.++.....++...+..         +.|.+
T Consensus        21 Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~   99 (250)
T PF06813_consen   21 FSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM   99 (250)
T ss_pred             hhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence            44444445555556666778888888888876 488899999999999999998877777665442         34445


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666        105 FAMISISGVFAVT-FSVVFAYVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       105 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      .+..++.+.+... .........+.+| ++||++.|+.....++
T Consensus       100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GL  142 (250)
T PF06813_consen  100 CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGL  142 (250)
T ss_pred             HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHh
Confidence            4444554444333 3444455557776 5799999988777766

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.50  E-value=1.1e-05  Score=60.14  Aligned_cols=147  Identities=17%  Similarity=0.156  Sum_probs=109.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhh-hhcchHHHHHHHHHHH
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD-LWGRKLFLLITVFVTC   91 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~~~~~~   91 (167)
                      ++........++..+++.. .-..+=+|-.+..+.+..+..-+......+..++-...|++.. |.++|+...+++..++
T Consensus       208 ~~a~~f~~fl~l~t~a~~~-QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~  286 (403)
T PF03209_consen  208 PQARRFFVFLFLGTLAFFM-QDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGA  286 (403)
T ss_pred             CChhHHHHHHHHHHHHHHh-hHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            3344444445555555433 5556666666666777777788888899999999988898876 6778888778877776


Q ss_pred             hhHHhhhH-----HHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         92 LPIPLMTL-----DTWWFFAMISISGVFAVTFS-VVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        92 ~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ++......     +.+.+-...++.|++++.+. ..-+...|..++++.+..+|.....+..  .+|..++|.+.+.
T Consensus       287 ~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  287 LAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66554432     66777788899999876655 6778889999999999999999999888  8888899988764

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.45  E-value=4e-05  Score=58.10  Aligned_cols=148  Identities=7%  Similarity=-0.006  Sum_probs=79.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      ++|.++...+...+....... .....|.+.++..+.+..+.++.......+..+++...+++.+|..+++.........
T Consensus       216 ~~~~~~~~~l~~~~~~~~~~~-~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~  294 (413)
T PRK15403        216 RNRLFLTGAATLSLSYIPMMS-WVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQ  294 (413)
T ss_pred             cCHHHHHHHHHHHHHHHHHHH-HHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence            344555554444444444322 3556788888876666677788877777888888888888765444433322211111


Q ss_pred             HhhHHh-------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         91 CLPIPL-------MTLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        91 ~~~~~~-------~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .++...       ...+.+...+..++.+++. ...+...+..-+ -.+..++++.+..+.....  ..++..++++.+.
T Consensus       295 ~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~  373 (413)
T PRK15403        295 LVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN  373 (413)
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            111111       1112222344555555543 344544432221 1223468888877776555  6777777776543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.44  E-value=2.6e-05  Score=57.36  Aligned_cols=127  Identities=15%  Similarity=0.125  Sum_probs=101.6

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-HHHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-DTWWFFAMISIS  111 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  111 (167)
                      .-|.++...++.+.+.. .+|++.+...++....+++..+++.|+|.++.+..++++..++..+=.. +.+.++....+.
T Consensus        31 vgPLL~~Ir~~~gls~s-~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l~  109 (395)
T COG2807          31 VGPLLDEIRQDLGLSFS-VAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLLA  109 (395)
T ss_pred             hhhhHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            46777778788777775 5699999999999999999999999999999999998887777666443 566677777888


Q ss_pred             HHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666        112 GVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN  161 (167)
Q Consensus       112 g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~  161 (167)
                      |.+- ..+...++.+-+.+|++ -+..+++|....++  ++++.+.-.+.+..
T Consensus       110 G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~  161 (395)
T COG2807         110 GAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS  161 (395)
T ss_pred             HhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh
Confidence            8754 46678899999999755 68999999988887  77777666665544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.43  E-value=1.6e-05  Score=61.76  Aligned_cols=104  Identities=12%  Similarity=0.174  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHhhhhhh----hhhhhhhcchHHHHHHHHHHHhhHHhhhH-----------HHHHHHHHHHHHHHHH-H
Q psy16666         53 GLIMGIKGFLSFLSAPLI----GALSDLWGRKLFLLITVFVTCLPIPLMTL-----------DTWWFFAMISISGVFA-V  116 (167)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~----g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~-~  116 (167)
                      ++..+...+...+..++.    +++.||.+.++.+.+++++.+++......           +.++.+...++.+++. .
T Consensus       319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~  398 (500)
T PRK09584        319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM  398 (500)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence            455566666666666665    66666776667778887777777665432           2457777888999876 5


Q ss_pred             HHHHHHHHHhccccchhhHHHHHHHHHHHhhhhccchhhHhh
Q psy16666        117 TFSVVFAYVADVTEEHERSLAYGLVSSETNQYSSPSLTPFYY  158 (167)
Q Consensus       117 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~gp~i~g~l~  158 (167)
                      ..|...+++.+..|++.|++.+|........  |+.++|.+.
T Consensus       399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~--g~~~~g~~~  438 (500)
T PRK09584        399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAG--AALIAGYVA  438 (500)
T ss_pred             HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            6789999999999999999999977655544  555555554

>KOG2615|consensus

Probab=98.36  E-value=1.2e-05  Score=59.47  Aligned_cols=118  Identities=11%  Similarity=0.170  Sum_probs=88.1

Q ss_pred             CchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc--chHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHHH-HHHHH
Q psy16666         46 DHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG--RKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVFA-VTFSV  120 (167)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~  120 (167)
                      +.++.+.|-+.+..++...+.+....+..||..  -+-.+..+..++.-.......  ....+..+..+..+.+ ...+.
T Consensus       293 g~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~  372 (451)
T KOG2615|consen  293 GYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTC  372 (451)
T ss_pred             CCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHH
Confidence            344456699999999999999999999999887  565666555544444444433  4445555566666644 45678


Q ss_pred             HHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhccc
Q psy16666        121 VFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCNNK  163 (167)
Q Consensus       121 ~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~~  163 (167)
                      ...++....|+++||+.+|+..+...+  ++||+++|.+..|...
T Consensus       373 Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~  417 (451)
T KOG2615|consen  373 LTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQG  417 (451)
T ss_pred             HHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecC
Confidence            889999999999999999999998888  9999999988776543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.34  E-value=3.7e-05  Score=58.71  Aligned_cols=126  Identities=16%  Similarity=0.207  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hcchHH-HHHHHHHHHhhHH
Q psy16666         21 VIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRKLF-LLITVFVTCLPIP   95 (167)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~-~~~~~~~~~~~~~   95 (167)
                      ..+........ ...++..|..+..+.+...+|.++.+.-+..++..|+.|.+.||    +||+|. ++++.+-.++...
T Consensus        20 gd~~~~~~~~~-~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~   98 (467)
T COG2211          20 GDFASNFAFGI-VVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV   98 (467)
T ss_pred             hhhHHHHHHHH-HHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence            34444444444 57788888888888888888999999999999999999999996    675554 4555444444333


Q ss_pred             -hhhH-------HHHHHHHHHHHHHH-HHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHhh
Q psy16666         96 -LMTL-------DTWWFFAMISISGV-FAVTFSVVFAYVADVTE-EHERSLAYGLVSSETNQ  147 (167)
Q Consensus        96 -~~~~-------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~  147 (167)
                       .+..       +.....+...+.+. .+..+.+..++.+|+.+ +++|.+..++-....++
T Consensus        99 l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~  160 (467)
T COG2211          99 LLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASL  160 (467)
T ss_pred             HHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHH
Confidence             3321       22334444456665 45566688899999887 78899999887766555

>KOG0254|consensus

Probab=98.33  E-value=7.7e-06  Score=63.70  Aligned_cols=125  Identities=15%  Similarity=0.132  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH
Q psy16666         20 VVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL   99 (167)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   99 (167)
                      +..+....+... ...+.+.+.++.+..+..  ........+...++..+...+.||+|||+.++.+.....++..+++.
T Consensus       302 l~~fqq~tG~~~-~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~  378 (513)
T KOG0254|consen  302 LQLFQQLTGINY-VFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAV  378 (513)
T ss_pred             HHHHHHHhCCce-EEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHH
Confidence            333444433333 466677777777766542  33445556777777777899999999999999997777666555442


Q ss_pred             -----H---------HHHHHHHH-HHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666        100 -----D---------TWWFFAMI-SISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       100 -----~---------~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                           .         .+..+... +....+ .+..+..+.+.+|.+|.+.|+++.++.......
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~  442 (513)
T KOG0254|consen  379 VGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWL  442 (513)
T ss_pred             HHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHH
Confidence                 1         11222222 222222 345567778999999999999999887665444

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.30  E-value=2.1e-05  Score=61.02  Aligned_cols=103  Identities=11%  Similarity=0.201  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhcchH-------HHHHHHHHHHhhHHh-------hh-----HHHHHHHHHHHHHHH
Q psy16666         53 GLIMGIKGFLSFLSAPLIGALSDLWGRKL-------FLLITVFVTCLPIPL-------MT-----LDTWWFFAMISISGV  113 (167)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~g~  113 (167)
                      ..+.+...+...+..|+.+++.||.++|+       .+.++.++.+++...       ..     .+.+++....++.|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            34445556677788899999999999886       255554544444321       11     146777777788888


Q ss_pred             HHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhh
Q psy16666        114 FAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTP  155 (167)
Q Consensus       114 ~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g  155 (167)
                      +.. ..++..+++.+..|++.++.++|+.+...++  .+|..++.
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~  436 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVAT  436 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            764 5678899999999999999999999888777  44444443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.26  E-value=9.6e-05  Score=57.12  Aligned_cols=85  Identities=26%  Similarity=0.490  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHH-HHHHHhhHHhhhH---HHHHHHHHH-HHHHH-HHHHHHHHHH
Q psy16666         50 LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT-VFVTCLPIPLMTL---DTWWFFAMI-SISGV-FAVTFSVVFA  123 (167)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~-~~~g~-~~~~~~~~~~  123 (167)
                      ...++..++..+...+..|..|.++|+-++||.++.. ..+..++...+..   +.+...... ++.-. .+......++
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446788899999999999999999999966655544 3444333333332   333333333 33333 3456678899


Q ss_pred             HHhccccchhh
Q psy16666        124 YVADVTEEHER  134 (167)
Q Consensus       124 ~~~~~~~~~~r  134 (167)
                      +++|+.+++++
T Consensus       150 ~LP~la~~~~~  160 (477)
T PF11700_consen  150 YLPDLARPEPR  160 (477)
T ss_pred             HhHhhcCCChh
Confidence            99999998888

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG0637|consensus

Probab=98.23  E-value=5.8e-06  Score=62.33  Aligned_cols=139  Identities=16%  Similarity=0.171  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hcchHHHHHH-HHH
Q psy16666         15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRKLFLLIT-VFV   89 (167)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~~~-~~~   89 (167)
                      +..+....+-..+++.. -..+.++|.++.+.... ..+.+..+.-+...+.+|..|..+||    +||||..+.. ...
T Consensus        34 li~v~~ia~Gvqf~wA~-elsy~tPyl~~lGvphk-~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~  111 (498)
T KOG0637|consen   34 LISVASIAAGVQFGWAL-ELSYLTPYLQSLGVPHK-WSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL  111 (498)
T ss_pred             HHHHHHHHHHHHHHHHH-HhccccHHHHHcCCCcc-cccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence            33333344444555544 57788999998887775 44888888889999999999999995    7888877665 334


Q ss_pred             HHhhHHhhhH--H----------H--HHHHHHHHHHHH------HHHHHHHHHHHHhccccchhhHH-HHHHHHHHHhh-
Q psy16666         90 TCLPIPLMTL--D----------T--WWFFAMISISGV------FAVTFSVVFAYVADVTEEHERSL-AYGLVSSETNQ-  147 (167)
Q Consensus        90 ~~~~~~~~~~--~----------~--~~~~~~~~~~g~------~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~-  147 (167)
                      ..++..++.+  +          .  ...-+...+.|+      ......+..+++.|+..++++.+ +++.+.....+ 
T Consensus       112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG  191 (498)
T KOG0637|consen  112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG  191 (498)
T ss_pred             HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence            4444443321  1          1  112222233332      23566799999999999888877 88887777776 


Q ss_pred             -hhccchhh
Q psy16666        148 -YSSPSLTP  155 (167)
Q Consensus       148 -~~gp~i~g  155 (167)
                       .+|-..++
T Consensus       192 nvLGY~~g~  200 (498)
T KOG0637|consen  192 NVLGYALGS  200 (498)
T ss_pred             ceeeeeccc
Confidence             55555554

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.14  E-value=0.00035  Score=53.98  Aligned_cols=147  Identities=14%  Similarity=0.145  Sum_probs=92.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHh-hCCC-c-----hHHH----HHHHHHHHHHHHHhhhhhhhhhhhhhcc-h
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNR-TFPD-H-----TFLM----NGLIMGIKGFLSFLSAPLIGALSDLWGR-K   80 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-----~~~~----~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r   80 (167)
                      +..+.+++..++..+++.. ...+...+.. +..+ .     ..++    ..+....+.+...+.+...-++.+|+|+ |
T Consensus       258 ~~m~~l~~vqffsW~a~f~-~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k  336 (477)
T TIGR01301       258 RPVWILLLVTCLNWIAWFP-FILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK  336 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            4567788888888887633 2333333432 2211 1     1111    2344555666666777788889999995 6


Q ss_pred             HHHHHHHHHHHhhHHhhhH--H---------------------HHHHHHHHHHHHH-HHHHHHHHHHHHhccccc--hhh
Q psy16666         81 LFLLITVFVTCLPIPLMTL--D---------------------TWWFFAMISISGV-FAVTFSVVFAYVADVTEE--HER  134 (167)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~--~---------------------~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~--~~r  134 (167)
                      ++...+.++.++++....+  +                     .+..++...+.|+ .+..+..-++++++..++  ++.
T Consensus       337 ~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~  416 (477)
T TIGR01301       337 RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQ  416 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCC
Confidence            6667775555554443321  1                     2555666677787 456777888999998885  455


Q ss_pred             HHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        135 SLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       135 ~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      |..+|+.|.+..+  .+..+..|.+.+.
T Consensus       417 G~~mgilN~~I~lpQii~sl~~g~~~~~  444 (477)
T TIGR01301       417 GLSMGVLNLAIVIPQIIVSLGSGPWDQL  444 (477)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888  6666566664443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.11  E-value=0.00017  Score=55.88  Aligned_cols=106  Identities=8%  Similarity=0.022  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhcc--h----H-HHHHHHHHHHhhHHhhh-----------HHHHHHHHHHHHHHHH
Q psy16666         53 GLIMGIKGFLSFLSAPLIGALSDLWGR--K----L-FLLITVFVTCLPIPLMT-----------LDTWWFFAMISISGVF  114 (167)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~--r----~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~  114 (167)
                      ++..+...+..++..|+.+++=.|..|  |    + =+.+++++.+++...+.           .+.++++...++.+++
T Consensus       311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g  390 (493)
T PRK15462        311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA  390 (493)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence            567788888888888887777555522  1    1 13455555555544432           1567777778888887


Q ss_pred             H-HHHHHHHHHHhccccchhhHHHHHHHHHHHhhhhccchhhHhhh
Q psy16666        115 A-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQYSSPSLTPFYYY  159 (167)
Q Consensus       115 ~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~gp~i~g~l~~  159 (167)
                      . ...|...++++++.|++.|+..+|.+..... .+|+.++|.+..
T Consensus       391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~-~~~~~~~g~~~~  435 (493)
T PRK15462        391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSG-AIANYLAGVIAD  435 (493)
T ss_pred             HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            6 4567999999999999999999999854332 346666666654

>KOG3764|consensus

Probab=98.05  E-value=9e-06  Score=60.47  Aligned_cols=135  Identities=11%  Similarity=0.019  Sum_probs=85.4

Q ss_pred             HHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHH--HHHHHHHHhhHHh--hhHH
Q psy16666         25 EFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFL--LITVFVTCLPIPL--MTLD  100 (167)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~--~~~~~~~~~~~~~--~~~~  100 (167)
                      ...+..+ .-|.++.+..+.-.++..+.|..+--..+.+.++..+.|.++||++..+.+  ..+++...++...  ++.+
T Consensus       282 ~n~~laf-LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~  360 (464)
T KOG3764|consen  282 SNSSLAF-LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS  360 (464)
T ss_pred             ccchHHH-hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh
Confidence            3344445 688899987776667766779988889999999999999999999943332  2223333322222  2224


Q ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHhccccch---hhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        101 TWWFFAMISISGVFA----VTFSVVFAYVADVTEEH---ERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       101 ~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ...+++-.+..++..    ...-+...+..|.-..+   .-+...++...++.+  ++||.++|.+.+.
T Consensus       361 ~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~  429 (464)
T KOG3764|consen  361 IAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA  429 (464)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee
Confidence            444444443333322    22223444444443333   567788888888888  9999999998753

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.00  E-value=0.00011  Score=54.88  Aligned_cols=112  Identities=12%  Similarity=0.042  Sum_probs=72.0

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc-----chHHHHHH-HHHHHhhHHhhhH------H--------H--HH-
Q psy16666         47 HTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG-----RKLFLLIT-VFVTCLPIPLMTL------D--------T--WW-  103 (167)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~-~~~~~~~~~~~~~------~--------~--~~-  103 (167)
                      .+....+...+...+.+ +..+.+|+.+|+.+     ||...++. ......+.....+      +        .  +. 
T Consensus        12 vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~   90 (403)
T PF03209_consen   12 VPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLA   90 (403)
T ss_pred             cHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHH
Confidence            33345566666665554 46899999999988     77665554 3333332222211      1        1  11 


Q ss_pred             -HHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        104 -FFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       104 -~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                       ..+...+.|.+ .....+..+++.|..|||+|+++.++...+.-+  +++..+.|.+.+
T Consensus        91 ~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~  150 (403)
T PF03209_consen   91 LAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD  150 (403)
T ss_pred             HHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence             22233455554 345568899999999999999999998887666  777777776654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0253|consensus

Probab=97.93  E-value=0.00012  Score=54.43  Aligned_cols=108  Identities=14%  Similarity=-0.035  Sum_probs=82.2

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh--hHHHHHHHHHHHHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM--TLDTWWFFAMISIS  111 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  111 (167)
                      ...+..-.+...+.+..+..++......+..+++..+|..+|++|||+..........+...+-  ..++.++.+.+.+.
T Consensus        97 ~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~  176 (528)
T KOG0253|consen   97 LSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALW  176 (528)
T ss_pred             HHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHH
Confidence            4444444455555666677999999999999999999999999999999888877666644443  34777888888888


Q ss_pred             HHHHHHHHHHHHHHhccccchhhHHHHHHH
Q psy16666        112 GVFAVTFSVVFAYVADVTEEHERSLAYGLV  141 (167)
Q Consensus       112 g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  141 (167)
                      |++-+..|...++-.|..|..+|..-.-..
T Consensus       177 ~~g~gg~pv~~~~yle~lp~~~r~~~~V~~  206 (528)
T KOG0253|consen  177 GFGVGGLPVDSAIYLEFLPSSHRWLLTVMS  206 (528)
T ss_pred             hccCCCccHhHHHHHHhccCcCCCcchhHH
Confidence            885444888888999999988887655443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.91  E-value=0.00071  Score=53.58  Aligned_cols=145  Identities=13%  Similarity=0.021  Sum_probs=89.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchH---HHHHHHHHHHHHHHHhhhhhhhhhhhhhcchH-HHHHHHH
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTF---LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKL-FLLITVF   88 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~   88 (167)
                      |.+...++..++..+.+.. ...+.|........++.   ...++......++..++..+.|.+..+++|-| .++++..
T Consensus       310 r~~~~~lvi~fi~G~~~~s-~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~  388 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFS-VNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSV  388 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHH
Confidence            3444444555555444423 34556665554433322   23467777788888889999999998887544 4455654


Q ss_pred             HHHhhHHhhhH----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666         89 VTCLPIPLMTL----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus        89 ~~~~~~~~~~~----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      ...+....++.    +....+...++.|++. ....+....++-..|+++-+.+.++..+...+  .+|..+...++
T Consensus       389 ~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  389 LMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             HHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            44444344432    3334445566777754 44446667777788999999999998888777  55655555443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2533|consensus

Probab=97.88  E-value=0.00031  Score=54.48  Aligned_cols=127  Identities=12%  Similarity=0.072  Sum_probs=79.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hcchHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRKLFLLIT   86 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~~~   86 (167)
                      +.+.+|...+..++....... ...++|.++++..+.+..+.+.+.....++.+++.+.+|+++||    ..+|......
T Consensus       271 ~dp~vw~~~l~~~~~~lv~~~-~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~  349 (495)
T KOG2533|consen  271 KDPGVWPFSLCYFFLKLVNYG-FSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVF  349 (495)
T ss_pred             hchhHHHHHHHHHHHhhcccc-HHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            345667676666666665544 58899999998555666677888899999999999999999999    5566555555


Q ss_pred             HHHHH-hhHHhhhH-HHHHHHHHHHHHHH--HHHHHHHHHHHHhccccchhhHHHH
Q psy16666         87 VFVTC-LPIPLMTL-DTWWFFAMISISGV--FAVTFSVVFAYVADVTEEHERSLAY  138 (167)
Q Consensus        87 ~~~~~-~~~~~~~~-~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~r~~~~  138 (167)
                      ..+.. ++...+.. +........++.+.  .....+......++...++.|....
T Consensus       350 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~  405 (495)
T KOG2533|consen  350 LCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTT  405 (495)
T ss_pred             HHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHH
Confidence            33333 33233322 21112222222222  2344556777777777665554443

>KOG2563|consensus

Probab=97.86  E-value=0.00027  Score=53.57  Aligned_cols=145  Identities=14%  Similarity=0.005  Sum_probs=85.0

Q ss_pred             hhHHHHHHHHHHHHHHHHh--HHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666         13 PSVYHALVVIFLEFFAWGL--LTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT   90 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (167)
                      ++-|.+++...+..+..++  +....+..+.+.+.+ +...+-+..-++.+.+.+....+-|+.||+|-|....++....
T Consensus        41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln  119 (480)
T KOG2563|consen   41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN  119 (480)
T ss_pred             hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence            3444444444444444322  122333334444444 3345578888899999999999999999999999999887777


Q ss_pred             HhhHHhhh--H------HHH--HHHHHHHHHHHHHHHHHHH-HHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666         91 CLPIPLMT--L------DTW--WFFAMISISGVFAVTFSVV-FAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY  157 (167)
Q Consensus        91 ~~~~~~~~--~------~~~--~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l  157 (167)
                      .++..+=.  .      ..+  ....+..+.+....+.-.. .-...-++|+++|+.+..+-.....+  ++|-++...+
T Consensus       120 ~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppil  199 (480)
T KOG2563|consen  120 GIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPIL  199 (480)
T ss_pred             HHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcccee
Confidence            66544422  1      222  2222223333222222222 34556689999999999887766555  4444444444


Q ss_pred             h
Q psy16666        158 Y  158 (167)
Q Consensus       158 ~  158 (167)
                      .
T Consensus       200 V  200 (480)
T KOG2563|consen  200 V  200 (480)
T ss_pred             c
Confidence            3

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.83  E-value=0.00034  Score=40.89  Aligned_cols=66  Identities=15%  Similarity=0.134  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL   99 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   99 (167)
                      ..|.+|...++.+.+.. +.+++.+...+++.++.+...++.++..+++.+..+.+...+.....+.
T Consensus        11 yTplLP~M~~~~~ls~~-~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen   11 YTPLLPLMQADGGLSLS-QAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             HHhHhHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            47889988887776665 6699999999999999999999999988888888888777776666554

Note that many members are hypothetical proteins.

>KOG2816|consensus

Probab=97.75  E-value=0.0002  Score=55.14  Aligned_cols=123  Identities=17%  Similarity=0.277  Sum_probs=95.8

Q ss_pred             HHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhh-hhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHH
Q psy16666         38 SVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIG-ALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVF  114 (167)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~  114 (167)
                      +.|.+...+-+..+.+...+.......+++.+.. .+...+|-|+++..++..-.+....+++  +.|.++...++..+.
T Consensus       265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~  344 (463)
T KOG2816|consen  265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA  344 (463)
T ss_pred             EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh
Confidence            3445544455556668788888888888888877 7788889888888887766665555544  778888888777777


Q ss_pred             HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        115 AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ....+...+.++.+.+++++|+++++......+  .++|.+-+.++..
T Consensus       345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            778899999999999999999999999998888  8888877766543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.72  E-value=0.00079  Score=54.09  Aligned_cols=125  Identities=16%  Similarity=0.146  Sum_probs=79.5

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh-hcchHHHHHHHHHHHhhHHhhhHH----------HH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITVFVTCLPIPLMTLD----------TW  102 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~----------~~  102 (167)
                      ...+..|+.+..+.+...+..+...+.....+...++|+++|+ +||++.+.++.++..++..+++.+          ..
T Consensus         7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~   86 (654)
T TIGR00926         7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDL   86 (654)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHH
Confidence            3344555554444444455666677777777888999999996 799999988877777766555431          11


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhccccch---hhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        103 WFFAMISISGVF-AVTFSVVFAYVADVTEEH---ERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       103 ~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      ..+.+..+..++ ++.-+...+...|.++++   +|.+.+.+++.+.++  .+++.+.+++-
T Consensus        87 ~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~  148 (654)
T TIGR00926        87 LDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILR  148 (654)
T ss_pred             HHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122333333333 345578888888888754   356667777777777  55666666554

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.69  E-value=0.0047  Score=46.76  Aligned_cols=126  Identities=11%  Similarity=0.058  Sum_probs=90.5

Q ss_pred             HHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh--hHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTF--PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM--TLDTWWFFAMI  108 (167)
Q Consensus        33 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  108 (167)
                      .-|++..|+.+.  +.++.+...-+.-+..=..+....+...+.|..+.|++++++.+...+...++  ..+.+.+-+.-
T Consensus        22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q  101 (412)
T PF01770_consen   22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQ  101 (412)
T ss_pred             CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence            367787787664  33443333345455555666777888999999999999999877666654443  34777788888


Q ss_pred             HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        109 SISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       109 ~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      ++.|...+...+.++++-...|+++-.++.+....+.-+  .++..+|-.+.
T Consensus       102 ~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv  153 (412)
T PF01770_consen  102 FFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV  153 (412)
T ss_pred             HHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888888999999989998888888877666555  55555554443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.61  E-value=0.011  Score=45.88  Aligned_cols=109  Identities=12%  Similarity=0.168  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHhh-hhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-----------------------------
Q psy16666         50 LMNGLIMGIKGFLSFLS-APLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-----------------------------   99 (167)
Q Consensus        50 ~~~~~~~~~~~~~~~~~-~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----------------------------   99 (167)
                      +.+.++-+...+...+. .+..+++++|++|++++............++..                             
T Consensus        43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~  122 (472)
T TIGR00769        43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF  122 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence            45677777776666666 899999999999999876653333332222211                             


Q ss_pred             ----HHHHHHHHHHHHHHHH-HHHH-HHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        100 ----DTWWFFAMISISGVFA-VTFS-VVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       100 ----~~~~~~~~~~~~g~~~-~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                          +.|..-+..+.....+ ...+ ..++++.|.+.+++-.+-.++.....++  .+|+.+..++.
T Consensus       123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                1222223333344433 3445 7899999999999999999999999888  67776666655

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.60  E-value=1.1e-07  Score=72.42  Aligned_cols=122  Identities=18%  Similarity=0.243  Sum_probs=75.0

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh---H---HH-----H
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT---L---DT-----W  102 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~---~~-----~  102 (167)
                      ..+.+...++.+..+..   .......+...++.+....+.||+|||++++.+.....+....+.   .   +.     .
T Consensus       273 ~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (451)
T PF00083_consen  273 FYYSPSIFENAGISNSF---LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSI  349 (451)
T ss_pred             ccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            33445555554444431   222334466667777888999999999999888666555444332   1   11     1


Q ss_pred             HHHHHHHHHH-HHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        103 WFFAMISISG-VFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       103 ~~~~~~~~~g-~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      ..+....+.. ..+ +..+..+.+.+|.+|++.|+++.++......+  .++|.+...+.
T Consensus       350 ~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~  409 (451)
T PF00083_consen  350 LSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLF  409 (451)
T ss_pred             ccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            1222222222 222 45567778999999999999999998887766  55555544443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.58  E-value=0.00078  Score=54.04  Aligned_cols=81  Identities=9%  Similarity=0.109  Sum_probs=56.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHH-HHHhhhhhhhhhhhhhc--chHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGF-LSFLSAPLIGALSDLWG--RKLFLLITVF   88 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g--~r~~~~~~~~   88 (167)
                      ++.++...+..++....... ...++|.|+++..+.+..+++++.....+ +..++.+..|++.||++  .|+.+.++..
T Consensus       329 n~~f~~~~l~~~~~~~~~~~-~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~  407 (633)
T TIGR00805       329 NPIYMLVILAQVIDSLAFNG-YITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAIC  407 (633)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHH
Confidence            34444455555555555444 57789999998777777787888877666 56789999999999998  4556655544


Q ss_pred             HHHhh
Q psy16666         89 VTCLP   93 (167)
Q Consensus        89 ~~~~~   93 (167)
                      ...++
T Consensus       408 ~~~~~  412 (633)
T TIGR00805       408 LSTLS  412 (633)
T ss_pred             HHHHH
Confidence            44443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0255|consensus

Probab=97.58  E-value=0.011  Score=46.29  Aligned_cols=100  Identities=18%  Similarity=0.316  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH---HHH--HHHHHHHHHHH-HHHHHHHHHHHHhccc
Q psy16666         56 MGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL---DTW--WFFAMISISGV-FAVTFSVVFAYVADVT  129 (167)
Q Consensus        56 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~g~-~~~~~~~~~~~~~~~~  129 (167)
                      ...............+...|++|||.....+.....++......   ...  ...+...+..+ .+..+.....+..|++
T Consensus       356 ~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~  435 (521)
T KOG0255|consen  356 FTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELI  435 (521)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33444466666677789999999999999987777776666554   111  22232333323 3445556699999999


Q ss_pred             cchhhHHHHHHHHHHHhh--hhccchhh
Q psy16666        130 EEHERSLAYGLVSSETNQ--YSSPSLTP  155 (167)
Q Consensus       130 ~~~~r~~~~~~~~~~~~~--~~gp~i~g  155 (167)
                      |+..|..+.+..+....+  +++|.+..
T Consensus       436 pt~~r~~~~~~~~~~~~~~~i~ap~~~~  463 (521)
T KOG0255|consen  436 PTVVRNTAVGAISAAARLGSILAPLFPL  463 (521)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888777  56665543

>KOG3762|consensus

Probab=97.48  E-value=9e-05  Score=57.25  Aligned_cols=72  Identities=21%  Similarity=0.352  Sum_probs=55.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHH-HHHHHhhHH
Q psy16666         22 IFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT-VFVTCLPIP   95 (167)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~-~~~~~~~~~   95 (167)
                      .++.....+. +.|.++.|.++.+.... +.|.++...-+..+++.|++|.++||+.+|+.++++ .+....+.+
T Consensus        20 ~~~~~~~~g~-l~pll~vy~kQLGl~p~-~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~f   92 (618)
T KOG3762|consen   20 YLFFGARFGS-LFPLLAVYFKQLGLNPA-VVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATF   92 (618)
T ss_pred             eeeeeecccc-cchHHHHHHHHcCCCHH-HhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            3444455555 69999999998887775 669999999999999999999999999977766665 444444333

>KOG1330|consensus

Probab=97.44  E-value=0.0015  Score=49.80  Aligned_cols=121  Identities=14%  Similarity=0.056  Sum_probs=71.4

Q ss_pred             HHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcch----HHHHHHHH-------HHHhhHHhhhH---HHHHHH
Q psy16666         40 LNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRK----LFLLITVF-------VTCLPIPLMTL---DTWWFF  105 (167)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~-------~~~~~~~~~~~---~~~~~~  105 (167)
                      +..+..+.+..+..+...+...++.+|..++|.++||+.|+    .......+       .++....++..   +.....
T Consensus       273 ~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~  352 (493)
T KOG1330|consen  273 YSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFG  352 (493)
T ss_pred             HHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHH
Confidence            33344433333334556677788889999999999994321    12222211       11111122221   233334


Q ss_pred             HHHHHHHHHHHH--HHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhhh
Q psy16666        106 AMISISGVFAVT--FSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYYC  160 (167)
Q Consensus       106 ~~~~~~g~~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~~  160 (167)
                      +..++.|....+  .++..-+..|..||++|.++.++.......   +-+|.+.|.+.+.
T Consensus       353 ~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~  412 (493)
T KOG1330|consen  353 LILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK  412 (493)
T ss_pred             HHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence            444555553332  235566778999999999999998887777   7777788888764

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.39  E-value=0.017  Score=44.25  Aligned_cols=113  Identities=13%  Similarity=0.057  Sum_probs=74.3

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH----hhHHh-hhH-HH-HHHHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC----LPIPL-MTL-DT-WWFFA  106 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~----~~~~~-~~~-~~-~~~~~  106 (167)
                      ...+..|+...+.++ ..+|..-+...+....+.....++.+|+|..+.=.++...-.    .+... +.. +. ...-.
T Consensus       278 ~~lmt~yl~~~G~s~-~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~  356 (432)
T PF06963_consen  278 GGLMTAYLKSQGYSP-SVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISA  356 (432)
T ss_pred             cHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Confidence            445566777765554 567999999999999999999999999997777666532211    11111 111 11 11222


Q ss_pred             HHHHHHHH-H--H---HHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666        107 MISISGVF-A--V---TFSVVFAYVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       107 ~~~~~g~~-~--~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      ..++.|+. +  |   +--...-++.|..|+++|+...|..++..++
T Consensus       357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~l  403 (432)
T PF06963_consen  357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSL  403 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHH
Confidence            22333331 1  2   2236778899999999999999999888777

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG4686|consensus

Probab=97.34  E-value=1.6e-05  Score=57.02  Aligned_cols=97  Identities=16%  Similarity=0.145  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhh-hcchHHHHHHHHHHHhhHHhh-----hHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy16666         51 MNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITVFVTCLPIPLM-----TLDTWWFFAMISISGVFA-VTFSVVFA  123 (167)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~-~~~~~~~~  123 (167)
                      +..++.+.++....+.+.+.|++.|| +|-|..-++-+....++-..+     .+++|.+...|++.|+++ ..-...+.
T Consensus        80 kftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~  159 (459)
T KOG4686|consen   80 KFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNK  159 (459)
T ss_pred             eeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcc
Confidence            44788899999999999999999997 565554333333233333333     348899999999999976 45457889


Q ss_pred             HHhccccchhhHHHHHHHHHHHhh
Q psy16666        124 YVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       124 ~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      +..-++..++-..++|+..+...+
T Consensus       160 yav~wFKGKELn~vfGlqlSvAR~  183 (459)
T KOG4686|consen  160 YAVYWFKGKELNFVFGLQLSVARL  183 (459)
T ss_pred             eeEEEecCccccchhhHHHHHHHh
Confidence            999999999999999998877666

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.33  E-value=0.0022  Score=48.39  Aligned_cols=100  Identities=14%  Similarity=0.138  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHH-HHHHHhhHHhhhH----HHHHHHH-HHHHHHHH-HHHHHH
Q psy16666         48 TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT-VFVTCLPIPLMTL----DTWWFFA-MISISGVF-AVTFSV  120 (167)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~-~~~~~~~~~~~~~----~~~~~~~-~~~~~g~~-~~~~~~  120 (167)
                      .....+...++..+...+..|..|.++|+.|+||...-. ..+..+....+..    ++++..+ ...+..++ ......
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            444558889999999999999999999999966654433 3333333333332    3444433 33444553 456668


Q ss_pred             HHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666        121 VFAYVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       121 ~~~~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      ..+++.+..++++.++..+.-.....+
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gyl  162 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYL  162 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccc
Confidence            899999999988777776654444333

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.32  E-value=0.011  Score=45.46  Aligned_cols=126  Identities=13%  Similarity=0.100  Sum_probs=73.4

Q ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----cchHHHHHHHHHHHhhHHhhhH------HHH
Q psy16666         34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-----GRKLFLLITVFVTCLPIPLMTL------DTW  102 (167)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~------~~~  102 (167)
                      .+..|.+.++++.++. +.....+...+.. ...|+.|.++|.+     .||+-++++.++..++...+..      +..
T Consensus        10 ~~~~~~l~~~l~ls~~-~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~   87 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPA-QLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA   87 (433)
T ss_pred             HHHHHHHHHHcCCCHH-HHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence            3444555555665554 4465555554444 4469999999986     3666666666555443333322      333


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHhcccc--chhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666        103 WFFAMISISGVFA-VTFSVVFAYVADVTE--EHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN  161 (167)
Q Consensus       103 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~  161 (167)
                      ...+..++..++. .......+++.|...  ++.|+...+.......+  .++..++|.+.+..
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~  151 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF  151 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence            3333444444433 333467778878773  33367777777666666  77777777776543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PTZ00207 hypothetical protein; Provisional

Probab=97.15  E-value=0.0041  Score=49.45  Aligned_cols=148  Identities=9%  Similarity=-0.005  Sum_probs=87.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCc-hHHHHHH-HHHHHHHHHHhhhhhhhhhhhhhcch--------H
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDH-TFLMNGL-IMGIKGFLSFLSAPLIGALSDLWGRK--------L   81 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~g~l~dr~g~r--------~   81 (167)
                      +..+|.++...++.... +......+.+..+...+. ...+... ..+..+++..+|.+..|.++...-+|        +
T Consensus       352 ~~d~Wll~~~~~cg~g~-gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt  430 (591)
T PTZ00207        352 TARLWCLLWSIFCCVGA-HFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPIT  430 (591)
T ss_pred             chhHHHHHHHHHHhhCc-hheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchh
Confidence            44566665555444433 443456667777777333 2221122 56788899999999999887322221        2


Q ss_pred             HHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhh
Q psy16666         82 FLLITVFVTCLPIPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTP  155 (167)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g  155 (167)
                      ..+....++.++..++..  +...+.+..++.|++. ...+.....++|++. ++-++-+.+.....-+   .+.-.+.|
T Consensus       431 ~~l~~~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G  509 (591)
T PTZ00207        431 IALFIPSVCIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYG  509 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHH
Confidence            222222223344344433  3257788888999865 566789999999999 7778777666555444   44445666


Q ss_pred             Hhhhhc
Q psy16666        156 FYYYCN  161 (167)
Q Consensus       156 ~l~~~~  161 (167)
                      .+++..
T Consensus       510 ~~Yd~e  515 (591)
T PTZ00207        510 EWYTQQ  515 (591)
T ss_pred             HHHHHH
Confidence            666543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.82  E-value=0.14  Score=38.93  Aligned_cols=100  Identities=14%  Similarity=0.179  Sum_probs=59.8

Q ss_pred             CchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh-----hhHHHHHHHHHHHHHHHH-HHHHH
Q psy16666         46 DHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-----MTLDTWWFFAMISISGVF-AVTFS  119 (167)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~-~~~~~  119 (167)
                      ....++..+....+.++-+++.--...+  |+.+.+++.+...+..+.+.+     +..+.|..++..+..|+. +..+.
T Consensus       277 ~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV  354 (402)
T PF02487_consen  277 FSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV  354 (402)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence            3344555677777777776665433222  333323322221111111111     112677777777888884 56677


Q ss_pred             HHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666        120 VVFAYVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       120 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      ..+..+.|..|+++|..++|.....-+.
T Consensus       355 NtF~~I~~~~~~~~REFslg~vsvsds~  382 (402)
T PF02487_consen  355 NTFYRISEEVPPEDREFSLGAVSVSDSL  382 (402)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhH
Confidence            7778888888999999999988777666

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG0252|consensus

Probab=96.72  E-value=0.0026  Score=48.66  Aligned_cols=87  Identities=16%  Similarity=0.159  Sum_probs=60.2

Q ss_pred             HHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhHHHH------HHHHHHHHHHHHH--HHHHHHHHHHhccccch
Q psy16666         61 FLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTW------WFFAMISISGVFA--VTFSVVFAYVADVTEEH  132 (167)
Q Consensus        61 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~  132 (167)
                      .....+..+...+.|++|||+..+.++++..+.....+..+.      -+++...+..+++  +-......+.+|.+|.+
T Consensus       359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar  438 (538)
T KOG0252|consen  359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR  438 (538)
T ss_pred             HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence            334457778889999999999999998888877666554221      2223333333333  33346777889999999


Q ss_pred             hhHHHHHHHHHHHhh
Q psy16666        133 ERSLAYGLVSSETNQ  147 (167)
Q Consensus       133 ~r~~~~~~~~~~~~~  147 (167)
                      .|++..|+...+.-.
T Consensus       439 vR~t~hGIsAA~GK~  453 (538)
T KOG0252|consen  439 VRSTCHGISAASGKA  453 (538)
T ss_pred             HhhhhhhHHHHhccc
Confidence            999999987665544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.71  E-value=0.052  Score=42.08  Aligned_cols=95  Identities=15%  Similarity=0.270  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhcch---H----HHHHHHHHHHhhHHhhhH------------HHHHHHHHHHHHHH
Q psy16666         53 GLIMGIKGFLSFLSAPLIGALSDLWGRK---L----FLLITVFVTCLPIPLMTL------------DTWWFFAMISISGV  113 (167)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r---~----~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~g~  113 (167)
                      .+..+...+..++.+|+..++-.|.+++   +    -+-++..++..++..+..            +.++++...+++++
T Consensus       327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~  406 (498)
T COG3104         327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF  406 (498)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            5677888888888888888777774433   1    123333333333332211            67888888899999


Q ss_pred             HHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666        114 FAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       114 ~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      +.- ..|...+++.+..|++-.+..++.+......
T Consensus       407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~  441 (498)
T COG3104         407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAA  441 (498)
T ss_pred             HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            874 5678999999999999888888877665544

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.66  E-value=0.2  Score=38.56  Aligned_cols=73  Identities=11%  Similarity=0.106  Sum_probs=53.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHH
Q psy16666         13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT   86 (167)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   86 (167)
                      +..+.++..-++...+... +....|.++.+....+-...+..-..-.+..++..+..|.+.||..|.+++..+
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~-w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~   74 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRM-WEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTS   74 (432)
T ss_pred             chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHH
Confidence            3455677777777777665 677778888777544433334444556678889999999999999999987666

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3098|consensus

Probab=96.59  E-value=0.016  Score=44.72  Aligned_cols=92  Identities=10%  Similarity=0.062  Sum_probs=75.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-HHHHHHHHHHHHHHHHHH-HHHHHHHHhccccchh
Q psy16666         56 MGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-DTWWFFAMISISGVFAVT-FSVVFAYVADVTEEHE  133 (167)
Q Consensus        56 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~  133 (167)
                      .++......+.+++.+.+.|+.|.|+.+.++..........+.+ |.+.++....+.|++++. +.....+++|..++|.
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~t  135 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRET  135 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhcCChhh
Confidence            55666777888999999999999999999998877776555544 778888888999997764 6677889999999999


Q ss_pred             hHHHHHHHHHHHhh
Q psy16666        134 RSLAYGLVSSETNQ  147 (167)
Q Consensus       134 r~~~~~~~~~~~~~  147 (167)
                      +.+..++.......
T Consensus       136 ie~Nisi~Wai~~~  149 (461)
T KOG3098|consen  136 IERNISIFWAIGQS  149 (461)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999887776666

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.53  E-value=0.00048  Score=54.14  Aligned_cols=136  Identities=15%  Similarity=0.180  Sum_probs=2.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--
Q psy16666         22 IFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--   99 (167)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--   99 (167)
                      .+......++ ....++..-++++..+ .+.|++.+.+-++..+..++..++.+|..|-+.+-.+.++.+++.++++.  
T Consensus        12 ~~~q~~~~g~-~~~~lttiErRF~l~S-~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPh   89 (539)
T PF03137_consen   12 GLFQMMVSGY-VNSSLTTIERRFGLSS-SQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPH   89 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHH-HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccH
Confidence            3344333333 4555666666666555 46699999999999999999999999987777777776666665544331  


Q ss_pred             -----------H---------------------------------------HHHHHHHHHHHHHHH-HHHHHHHHHHhcc
Q psy16666        100 -----------D---------------------------------------TWWFFAMISISGVFA-VTFSVVFAYVADV  128 (167)
Q Consensus       100 -----------~---------------------------------------~~~~~~~~~~~g~~~-~~~~~~~~~~~~~  128 (167)
                                 +                                       ...++++.++.|+++ ..++...+|+=|.
T Consensus        90 f~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDn  169 (539)
T PF03137_consen   90 FLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDN  169 (539)
T ss_dssp             --------------------------------------------------------------SSS---------------
T ss_pred             hhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccc
Confidence                       0                                       122344557777754 5778999999999


Q ss_pred             ccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        129 TEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       129 ~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      .++++-...+|+.+....+  ++|-.+++....
T Consensus       170 v~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~  202 (539)
T PF03137_consen  170 VSKKNSPLYIGILYAMSILGPALGFLLGSFCLR  202 (539)
T ss_dssp             ---------------------------------
T ss_pred             cccccCccchhhhhHHhhccHHHHHHHHHHHHh
Confidence            9999989999988887777  666667776654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR01272 gluP glucose/galactose transporter

Probab=96.42  E-value=0.011  Score=43.16  Aligned_cols=61  Identities=8%  Similarity=-0.020  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666        100 DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       100 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      +++.++++.++.|.+. ...+..+.+++++.|+|++++.+++.+.++++  .+||.+++.+...
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~   72 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILS   72 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            6788888889999865 56789999999999999999999999999998  9999999988743

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3098|consensus

Probab=96.37  E-value=0.31  Score=37.80  Aligned_cols=134  Identities=15%  Similarity=0.147  Sum_probs=76.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh---hcchHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNR---TFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL---WGRKLFLLI   85 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr---~g~r~~~~~   85 (167)
                      +++...+....+...+...+ +....|....   .....+....++.....+++..++....+.+.+|   +||++.+.+
T Consensus       239 ~~~ml~L~~~f~~tG~~~Sf-~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~  317 (461)
T KOG3098|consen  239 TPKMLLLFPFFFYTGLETSF-WISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLI  317 (461)
T ss_pred             CHhHHHHHHHHHHHHHHHHH-HHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhH
Confidence            34444444444444333333 4444454332   2333444444555566677777777777777754   788988888


Q ss_pred             HHHHHHhhHHhhhH--------------------HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHH
Q psy16666         86 TVFVTCLPIPLMTL--------------------DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSE  144 (167)
Q Consensus        86 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  144 (167)
                      +..+..+...+...                    +.....+..++.|+. .......+..+.+.. +++|.++.++...-
T Consensus       318 ~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfy  396 (461)
T KOG3098|consen  318 GIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFY  396 (461)
T ss_pred             HHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHH
Confidence            75554443333211                    233455555777775 345567888888888 56678777766554


Q ss_pred             Hhh
Q psy16666        145 TNQ  147 (167)
Q Consensus       145 ~~~  147 (167)
                      ..+
T Consensus       397 q~~  399 (461)
T KOG3098|consen  397 QSV  399 (461)
T ss_pred             HHH
Confidence            444

>PRK03612 spermidine synthase; Provisional

Probab=96.32  E-value=0.39  Score=37.97  Aligned_cols=42  Identities=14%  Similarity=0.055  Sum_probs=29.6

Q ss_pred             HHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy16666         36 IISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW   77 (167)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~   77 (167)
                      ....++....+.+....+.+.+++..+..+|+...+++.++.
T Consensus        36 ~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~   77 (521)
T PRK03612         36 LLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA   77 (521)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence            334444444555555668899999999999999888887443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.20  E-value=0.0012  Score=51.88  Aligned_cols=149  Identities=13%  Similarity=0.054  Sum_probs=0.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHH-HHHhhhhhhhhhhhhhc--chHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGF-LSFLSAPLIGALSDLWG--RKLFLLITV   87 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g--~r~~~~~~~   87 (167)
                      +|+.+....+........... ...++|.|++.....++..++++.....+ +..++.+++|++.+|+.  .|..+..+.
T Consensus       303 ~Np~f~~~~la~~~~~~~~~G-~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~  381 (539)
T PF03137_consen  303 TNPVFMCLILAGVFESFIVSG-FATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCI  381 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHH
Confidence            344455555555555554434 58899999998877777776777665444 56688899999999875  444443332


Q ss_pred             HHHHhhHHh----hhH------------HH-------------------------------------HHHH---HHHHHH
Q psy16666         88 FVTCLPIPL----MTL------------DT-------------------------------------WWFF---AMISIS  111 (167)
Q Consensus        88 ~~~~~~~~~----~~~------------~~-------------------------------------~~~~---~~~~~~  111 (167)
                      +...+....    +..            ++                                     ..+.   +..++.
T Consensus       382 v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~  461 (539)
T PF03137_consen  382 VVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFIL  461 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHH
Confidence            222221111    100            11                                     0011   111111


Q ss_pred             HHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhhh
Q psy16666        112 GVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYYC  160 (167)
Q Consensus       112 g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~~  160 (167)
                      .+. .....+.....-+..|+++|+.++|+......+   +-||++-|.+.+.
T Consensus       462 ~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  462 SFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -----------------------------------------------------
T ss_pred             HHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            121 223345556667888999999999999988877   8899999988753

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2563|consensus

Probab=96.15  E-value=0.009  Score=45.60  Aligned_cols=98  Identities=18%  Similarity=0.199  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhcc-hHHHHHHHHHHHhh-HHhhhH-----HHHHHHHHHHHHHH-HHHHHHHH
Q psy16666         50 LMNGLIMGIKGFLSFLSAPLIGALSDLWGR-KLFLLITVFVTCLP-IPLMTL-----DTWWFFAMISISGV-FAVTFSVV  121 (167)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~g~-~~~~~~~~  121 (167)
                      ...|.+.....++.+++..+.|.+.||.++ |.+.++......++ ..+...     ..+.+.....+.|. +.+..|..
T Consensus       301 ~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig  380 (480)
T KOG2563|consen  301 VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIG  380 (480)
T ss_pred             cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcc
Confidence            455888888999999999999999999874 34444444333333 222111     33444455555565 45677888


Q ss_pred             HHHHhccccchhhHHHHHHHHHHHhh
Q psy16666        122 FAYVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       122 ~~~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      .-+-.|..-|..-++..|+.+...++
T Consensus       381 ~ElgvE~TyPv~E~tSsGll~~~gq~  406 (480)
T KOG2563|consen  381 FELGVETTYPVAEGTSSGLLNLSGQI  406 (480)
T ss_pred             eeeeeeeccccCCcccceeEEeehhH
Confidence            88888877666667777776665555

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=94.89  E-value=1.4  Score=34.19  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhcch-HHHHHHHHHHHhhHHhhh--------------HHHHHHHHHHHHHHHHH
Q psy16666         51 MNGLIMGIKGFLSFLSAPLIGALSDLWGRK-LFLLITVFVTCLPIPLMT--------------LDTWWFFAMISISGVFA  115 (167)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~  115 (167)
                      ..-.....+.++..+|..+..+.. .-++| +.+.+..+.-.+..+++.              .+-+..++..++.|+.+
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            335566778888888887554431 11222 122233333333333221              13455666678888877


Q ss_pred             HHH-HHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666        116 VTF-SVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT  154 (167)
Q Consensus       116 ~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~  154 (167)
                      |.. .....+.++..++++|..+-.+...+...  .+|..++
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655 47777888989999888877777666666  5555443

>KOG3626|consensus

Probab=93.27  E-value=0.76  Score=37.74  Aligned_cols=78  Identities=10%  Similarity=0.067  Sum_probs=51.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HHhhhhhhhhhhhhhc--chHHHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFL-SFLSAPLIGALSDLWG--RKLFLLITVF   88 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~g--~r~~~~~~~~   88 (167)
                      ++.+....+...+....+.. ...++|.|++...+.++..+..++....+. ..+|..++|++..|+.  .|....+.++
T Consensus       391 N~if~~~~l~~~~~~~~~~G-~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~  469 (735)
T KOG3626|consen  391 NPIFMLVVLASVIESLAITG-YITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIV  469 (735)
T ss_pred             CchHHHHHHHHHHHHHHHhh-HHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHH
Confidence            34444445555555555544 488999999988888877777777555444 4577788899999875  4555444433


Q ss_pred             HH
Q psy16666         89 VT   90 (167)
Q Consensus        89 ~~   90 (167)
                      ..
T Consensus       470 ~~  471 (735)
T KOG3626|consen  470 CS  471 (735)
T ss_pred             HH
Confidence            33

>KOG3574|consensus

Probab=93.03  E-value=1.1  Score=34.25  Aligned_cols=131  Identities=15%  Similarity=0.124  Sum_probs=66.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhh-----hhcchHHHHHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD-----LWGRKLFLLIT   86 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~g~r~~~~~~   86 (167)
                      ++++..+...+.++..-.+. .. .+|.+++.-+.+-.++ +.....  ---.-..+.|.++.|     |+|||+.-++-
T Consensus        30 ~~~illLl~LYllQGiP~GL-~~-~iP~lL~ak~vSyt~~-a~fS~a--y~P~sLKllWaPiVDs~y~k~~GrrksWvvp  104 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGL-IG-AIPLLLQAKGVSYTSQ-AIFSFA--YWPFSLKLLWAPIVDSVYSKRFGRRKSWVVP  104 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhH-hh-hhHHHhcCCCcchhhh-hhhhhh--hhHHHHHHHHHhhhHHHHHHhhccccceeee
Confidence            44566666666666666655 34 7888887544443333 322211  112234577888888     99999875443


Q ss_pred             -HHHHHhhHHhhhH-------------HHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666         87 -VFVTCLPIPLMTL-------------DTWWFFAMISISGVFAVTF-SVVFAYVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus        87 -~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                       ..+....+..++.             +........++.-+..+.. .+.-.+.-.+..+++-+-+........++
T Consensus       105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~  180 (510)
T KOG3574|consen  105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTA  180 (510)
T ss_pred             hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhh
Confidence             2222222222221             1111111222333333333 25556666666677766665554444444

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=92.88  E-value=0.7  Score=35.63  Aligned_cols=115  Identities=17%  Similarity=0.269  Sum_probs=75.7

Q ss_pred             chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh---hhH---------HHHHHHHHHHHHHHH
Q psy16666         47 HTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL---MTL---------DTWWFFAMISISGVF  114 (167)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~~~~~g~~  114 (167)
                      .+....+.+..+..++..++.....+.-.+..-|+++..+.+...+....   +..         +.+..+.--++....
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            45556677777788888888888877766777777776665544433221   110         111122222444443


Q ss_pred             -HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666        115 -AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN  161 (167)
Q Consensus       115 -~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~  161 (167)
                       ...+-+...+++|+.|+...++.+++..+..++  .++..++..+.+.-
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~  381 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELF  381 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence             334457778899999999999999999999999  77777777766543

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=92.77  E-value=3.6  Score=31.66  Aligned_cols=96  Identities=21%  Similarity=0.265  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH--HhhHHhhhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q psy16666         52 NGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT--CLPIPLMTL--DTWWFFAMISISGV-FAVTFSVVFAYVA  126 (167)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~  126 (167)
                      -|.+-+...+.+.++....|++..++.+..-+..+....  +....++..  +.|...++.++.+. .....+....-++
T Consensus       287 NG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA  366 (412)
T PF01770_consen  287 NGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIA  366 (412)
T ss_pred             chHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            378888888999999999999977777655554442222  222223332  67777777766554 4555565555565


Q ss_pred             ccccchhhHHHHHHHHHHHhh
Q psy16666        127 DVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       127 ~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      ....+|.-+..+|+......+
T Consensus       367 ~~l~~e~yaLVFGiNtf~Al~  387 (412)
T PF01770_consen  367 KNLSEERYALVFGINTFVALV  387 (412)
T ss_pred             HhccccceeeeeeeHHHHHHH
Confidence            555667778888876554333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG4332|consensus

Probab=92.54  E-value=0.089  Score=38.11  Aligned_cols=95  Identities=18%  Similarity=0.114  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh-hhHHHHHHHHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-MTLDTWWFFAMISIS  111 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  111 (167)
                      ..|+.-...+..+... .++|.+.....-..++...+.|-++||-|||+.-..-++...++++- ....+-.++++|++.
T Consensus        56 QgPYvYyLYstYgFgk-G~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LG  134 (454)
T KOG4332|consen   56 QGPYVYYLYSTYGFGK-GDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLG  134 (454)
T ss_pred             cCceeeeeehhcCccC-CccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhh
Confidence            3444333333333333 34466666666667788889999999999999755444444444332 122566778889998


Q ss_pred             HHHH-HHHHHHHHH-Hhcc
Q psy16666        112 GVFA-VTFSVVFAY-VADV  128 (167)
Q Consensus       112 g~~~-~~~~~~~~~-~~~~  128 (167)
                      |+.. -.+...-++ +.|-
T Consensus       135 GiaTsLLFSaFEsWliaEH  153 (454)
T KOG4332|consen  135 GIATSLLFSAFESWLIAEH  153 (454)
T ss_pred             hHHHHHHHHHHHHHHHHHh
Confidence            8864 445555554 3443

>KOG2601|consensus

Probab=92.42  E-value=3.9  Score=31.30  Aligned_cols=75  Identities=12%  Similarity=0.081  Sum_probs=54.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT   86 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~   86 (167)
                      .++....++...++...+.-. +..-...++...++.+-...+.--.+-+....+..+..|...|+..|+|++...
T Consensus        25 ls~~~i~Ly~gy~lt~wgdR~-W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~   99 (503)
T KOG2601|consen   25 LSSTVIFLYLGYFLTTWGDRM-WEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTW   99 (503)
T ss_pred             ccceeehhhHHHHHhHhhHhH-HHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHH
Confidence            455556677777777777655 666677788888776554444444555566778889999999999999987665

>TIGR00806 rfc RFC reduced folate carrier

Probab=92.24  E-value=3.4  Score=32.58  Aligned_cols=92  Identities=16%  Similarity=0.241  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH--hhHHhhh--HHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy16666         53 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC--LPIPLMT--LDTWWFFAMISISGV-FAVTFSVVFAYVAD  127 (167)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~  127 (167)
                      |.+-++..+.+.+..+..|++-.++.+---+.++.+...  ....++.  .+.|...++.++.+. .....+....-+++
T Consensus       301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~  380 (511)
T TIGR00806       301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS  380 (511)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777888888899999998766644333433322222  1222222  277877777766654 45555655555666


Q ss_pred             cccchhhHHHHHHHHHH
Q psy16666        128 VTEEHERSLAYGLVSSE  144 (167)
Q Consensus       128 ~~~~~~r~~~~~~~~~~  144 (167)
                      ....|.-+..+|+.+..
T Consensus       381 ~L~~~~~aLvFGiNtfv  397 (511)
T TIGR00806       381 SLSKELCALVFGINTFV  397 (511)
T ss_pred             HhcccceEEEEecHHHH
Confidence            56566667777765543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=90.57  E-value=7.3  Score=30.80  Aligned_cols=110  Identities=17%  Similarity=0.232  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHH-HHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh-----H------------------------
Q psy16666         50 LMNGLIMGIKGF-LSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT-----L------------------------   99 (167)
Q Consensus        50 ~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-----~------------------------   99 (167)
                      +.+.++=....+ ...+......+++||++|+++.............+++     .                        
T Consensus        58 e~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~  137 (491)
T PF03219_consen   58 EVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGF  137 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHH
Confidence            333444443333 4445567788999999999987655333322222211     0                        


Q ss_pred             ----HHHHHHHHHHHHHHHH-HHHH-HHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        100 ----DTWWFFAMISISGVFA-VTFS-VVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       100 ----~~~~~~~~~~~~g~~~-~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                          +.|...+..+..-..+ ...+ ..+.++.|.++.++-.+..++.....++  +++..+...+.+
T Consensus       138 i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  138 IAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                1122222223333333 3334 5789999999999999999999998888  444444333333

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3626|consensus

Probab=90.53  E-value=0.22  Score=40.76  Aligned_cols=135  Identities=19%  Similarity=0.220  Sum_probs=91.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH---
Q psy16666         23 FLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL---   99 (167)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---   99 (167)
                      +...+..+. ....+...-+.+...+. +.|++.+.+-++..+...+..+..-|..|-+.+-++.++.+++.++.+.   
T Consensus       107 ~~q~l~~~y-~~s~IttiErRF~i~Ss-~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf  184 (735)
T KOG3626|consen  107 FAQGLYVGY-FNSVITTIERRFKISSS-QSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHF  184 (735)
T ss_pred             HHHHhhhhh-hhhhhhhhhhhcCCCCC-cceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHH
Confidence            333333333 34445555555555554 4699999999999999999999999998888777776666554443321   


Q ss_pred             ------------------H--------------------------------HH-HHHHHHHHHHHHH-HHHHHHHHHHhc
Q psy16666        100 ------------------D--------------------------------TW-WFFAMISISGVFA-VTFSVVFAYVAD  127 (167)
Q Consensus       100 ------------------~--------------------------------~~-~~~~~~~~~g~~~-~~~~~~~~~~~~  127 (167)
                                        +                                .+ .++++.++.|++. ..++...+|+=|
T Consensus       185 ~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDD  264 (735)
T KOG3626|consen  185 FSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDD  264 (735)
T ss_pred             hcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccc
Confidence                              0                                12 2334446777764 567888999999


Q ss_pred             cccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        128 VTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       128 ~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      ...+++-...+|+.+....+  ++|-++|++...
T Consensus       265 nvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~  298 (735)
T KOG3626|consen  265 NVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLK  298 (735)
T ss_pred             cccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            99988888888988866666  555556666554

>KOG4332|consensus

Probab=89.95  E-value=4.1  Score=29.91  Aligned_cols=95  Identities=16%  Similarity=0.159  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhcch--HHHHHHHHHHHhhHHh--hhH-------HHHHHHHHH-HHHHHHHHHHHH
Q psy16666         53 GLIMGIKGFLSFLSAPLIGALSDLWGRK--LFLLITVFVTCLPIPL--MTL-------DTWWFFAMI-SISGVFAVTFSV  120 (167)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~-~~~g~~~~~~~~  120 (167)
                      |++++.+.+..++++-...++..|-..|  ..+.+.+........+  ...       +...-+++. .+-...+..+|.
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPS  364 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPS  364 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchH
Confidence            8899999999999999988887765433  3444444443333222  221       222223333 333445667788


Q ss_pred             HHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666        121 VFAYVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       121 ~~~~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      ..-+=++..|++.|++.+.++..=.+.
T Consensus       365 imkmRsqyIPEearstimNfFRvPLni  391 (454)
T KOG4332|consen  365 IMKMRSQYIPEEARSTIMNFFRVPLNI  391 (454)
T ss_pred             HHHHHHhhCCHHHHhhhhhheechhhH
Confidence            888889999999999888775543333

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=89.33  E-value=2.1  Score=32.13  Aligned_cols=78  Identities=22%  Similarity=0.219  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHhhHHhhhH-----------HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccch---hhHHHHHHHHHHH
Q psy16666         81 LFLLITVFVTCLPIPLMTL-----------DTWWFFAMISISGVFAV-TFSVVFAYVADVTEEH---ERSLAYGLVSSET  145 (167)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~  145 (167)
                      +++.++.++..++..++..           +...+.++..+.+++.| .=|...++..|.++++   +|.+.+.+++.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            4556666666666555322           12456666777777655 4478899999999865   4667777788888


Q ss_pred             hh--hhccchhhHhh
Q psy16666        146 NQ--YSSPSLTPFYY  158 (167)
Q Consensus       146 ~~--~~gp~i~g~l~  158 (167)
                      ++  .+++.+.+++-
T Consensus        82 n~G~~~~~~~~~~i~   96 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQ   96 (372)
T ss_dssp             HHHHHHHHHCCCHHH
T ss_pred             hhhhHhhcccchhhc
Confidence            77  55655555554

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG1479|consensus

Probab=87.84  E-value=2.6  Score=32.23  Aligned_cols=103  Identities=19%  Similarity=0.238  Sum_probs=60.7

Q ss_pred             HHHHHHHHH-HHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh----------H-HHHHHHHHHHHHHHHHHH
Q psy16666         50 LMNGLIMGI-KGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT----------L-DTWWFFAMISISGVFAVT  117 (167)
Q Consensus        50 ~~~~~~~~~-~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~g~~~~~  117 (167)
                      ...-..... +.+...+|.+.+.++-++-.|+ . .+..++-.+..+++.          + +.+++++...+.|+..|.
T Consensus       282 ~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~-l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY  359 (406)
T KOG1479|consen  282 WYALLLVFLSFNVFDLIGSILAALLTWPDPRK-L-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY  359 (406)
T ss_pred             hhHHHHHHHHhHHHHHhhhhhhhcccCCCCce-e-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence            333445555 7788888877776665443333 2 333333333333333          1 567777778888888775


Q ss_pred             HH-HHHHHHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666        118 FS-VVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT  154 (167)
Q Consensus       118 ~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~  154 (167)
                      .. ....+.++..|++++..+-.+.......  ..|..++
T Consensus       360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            54 7788889998887765555544443333  4444433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=87.21  E-value=5  Score=24.53  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHH
Q psy16666         53 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLI   85 (167)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   85 (167)
                      +.......++..++....+.+.|..|.+.....
T Consensus        90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  122 (141)
T TIGR00880        90 GLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLF  122 (141)
T ss_pred             HHHHHhHHHHHHHhHHhHHHHhcccchHHHHHH
Confidence            444455556666666666666666655544333

>KOG4830|consensus

Probab=86.85  E-value=1.6  Score=31.72  Aligned_cols=59  Identities=17%  Similarity=0.171  Sum_probs=43.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhh---------hhhcchHHH
Q psy16666         23 FLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALS---------DLWGRKLFL   83 (167)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~---------dr~g~r~~~   83 (167)
                      ++.-...+. +.+++-.|+++.+.++.+. ..++....+...+..++.|..+         ||+|||+..
T Consensus        27 mlNDitASc-WFTYlllfltqiglsp~~~-AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w   94 (412)
T KOG4830|consen   27 MLNDITASC-WFTYLLLFLTQIGLSPSSR-AMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW   94 (412)
T ss_pred             HHhhHHHHH-HHHHHHHHHHHhcCCcchh-HHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence            334344333 7788888888888887665 5888889999999999987544         689988753

>KOG3810|consensus

Probab=85.67  E-value=14  Score=28.19  Aligned_cols=91  Identities=20%  Similarity=0.262  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh--hHHhhhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy16666         53 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL--PIPLMTL--DTWWFFAMISISGV-FAVTFSVVFAYVAD  127 (167)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~  127 (167)
                      |..-++..+.++++.+..|++--++.|..-++++..-...  ..+.++.  +.|+..++.++... ..-..+....-+++
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~  353 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR  353 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence            6666777888889999999998777766444443222222  2222222  66766666655543 44444555555555


Q ss_pred             cccchhhHHHHHHHHH
Q psy16666        128 VTEEHERSLAYGLVSS  143 (167)
Q Consensus       128 ~~~~~~r~~~~~~~~~  143 (167)
                      ...+|.-|..+|+...
T Consensus       354 nL~~e~~gLvFGiNTF  369 (433)
T KOG3810|consen  354 NLSSELFGLVFGINTF  369 (433)
T ss_pred             hhhhhhheeeeehHHH
Confidence            5556666777775543

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=83.54  E-value=4.5  Score=26.52  Aligned_cols=33  Identities=6%  Similarity=0.060  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666        115 AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ  147 (167)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  147 (167)
                      .+.....+..++-..++++.|...|+-..-.+.
T Consensus       109 ~gllGisYGilSaSWD~~r~GSllG~~e~~~N~  141 (153)
T PF11947_consen  109 LGLLGISYGILSASWDPEREGSLLGWEEFKRNW  141 (153)
T ss_pred             HHHHhhhhhhcccccCCCCCCCcccHHHHHHhH
Confidence            456667778888888888889999987766554

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=81.37  E-value=0.58  Score=34.32  Aligned_cols=98  Identities=16%  Similarity=0.220  Sum_probs=2.7

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhh-hcchHHHHHHHHHHHhhHHhh--h-------------HHHHHHHHHHHHHHHHHHHH
Q psy16666         55 IMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITVFVTCLPIPLM--T-------------LDTWWFFAMISISGVFAVTF  118 (167)
Q Consensus        55 ~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~--~-------------~~~~~~~~~~~~~g~~~~~~  118 (167)
                      ....+.++..+|....++.--+ ..+|++...+ +.-.+..+++  .             .+-++.++..++.|+.+|..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s-~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILS-LLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHH-HHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            4567888888888877764211 1344443332 2222222221  1             12344555567777766654


Q ss_pred             -HHHHHHHhccccchhhHHHHHHHHHHHhh--hhccch
Q psy16666        119 -SVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSL  153 (167)
Q Consensus       119 -~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i  153 (167)
                       .....+.++..++++|..+-.+...+...  .+|..+
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l  303 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL  303 (309)
T ss_dssp             -HHHH---------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             47778888888888887776665555444  444433

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 30/128 (23%)

Query: 32  LTMPIISVLNRTFPDH-----TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT 86
             + II+   R              + L   I+  L+ L             RK+F  ++
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMFDRLS 379

Query: 87  VFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEE-HERSLAYGLVSSET 145
           VF     IP + L   W F +I                V  V  + H+ SL       + 
Sbjct: 380 VFPPSAHIPTILLSLIW-FDVIKSD-------------VMVVVNKLHKYSLVEK--QPKE 423

Query: 146 NQYSSPSL 153
           +  S PS+
Sbjct: 424 STISIPSI 431

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.79
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.77
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.71
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.7
2xut_A	524	Proton/peptide symporter family protein; transport	99.69
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.68
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.54
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.49
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.48
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.39
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.31
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.27
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.22
2xut_A	524	Proton/peptide symporter family protein; transport	98.44

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.79  E-value=1.4e-17  Score=124.14  Aligned_cols=136  Identities=16%  Similarity=0.122  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh---
Q psy16666         21 VIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM---   97 (167)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~---   97 (167)
                      ..+...+.... ..+.+|.+.++++.++. +.+++.+...++..++.+++|+++||+|||+++..+.++.+++....   
T Consensus        34 ~~~~~~~~~~~-~~~~~~~~~~~~g~s~~-~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~  111 (438)
T 3o7q_A           34 LFFLWAVANNL-NDILLPQFQQAFTLTNF-QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA  111 (438)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHSCCCSH-HHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-HHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Confidence            33444444333 67888888888877665 56999999999999999999999999999999999987777766655   


Q ss_pred             hH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666         98 TL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus        98 ~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      ..  +.+.+++.+++.|++. ...+...+++.|++|+++|+++.++.+...++  .++|.+++.+.
T Consensus       112 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          112 AEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             cccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33  7888999999999965 56779999999999999999999999999888  99999999887

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.77  E-value=1.4e-17  Score=126.03  Aligned_cols=159  Identities=16%  Similarity=0.097  Sum_probs=120.3

Q ss_pred             CCCCCCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy16666          1 MIKNSPTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTF-----PDHTFLMNGLIMGIKGFLSFLSAPLIGALSD   75 (167)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d   75 (167)
                      |+++++....+++.++..+...+...+.+.. ..+.++.|.++.     .+.+..+.+++.+...++..++++++|+++|
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d   79 (491)
T 4aps_A            1 MEDKGKTFFGQPLGLSTLFMTEMWERFSYYG-MRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVAD   79 (491)
T ss_dssp             ----------CTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhhhccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444444444455666666667777766544 567778887764     4555567799999999999999999999999


Q ss_pred             h-hcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchh--hHHHHHHHHHHHhh--
Q psy16666         76 L-WGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHE--RSLAYGLVSSETNQ--  147 (167)
Q Consensus        76 r-~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~--  147 (167)
                      | +|||+++..+.++..++......  +.+.+++.+++.|++. ...+...+++.|++|+++  |+++.+.++...++  
T Consensus        80 r~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  159 (491)
T 4aps_A           80 RIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA  159 (491)
T ss_dssp             HTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHH
Confidence            9 89999999998777776665543  7788889999999865 567899999999999988  77788888888777  


Q ss_pred             hhccchhhHhhhh
Q psy16666        148 YSSPSLTPFYYYC  160 (167)
Q Consensus       148 ~~gp~i~g~l~~~  160 (167)
                      .+||.+++.+.+.
T Consensus       160 ~~~~~~~~~l~~~  172 (491)
T 4aps_A          160 FIAPLIVGAAQEA  172 (491)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            8999999988653

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.71  E-value=1.7e-16  Score=118.66  Aligned_cols=135  Identities=13%  Similarity=0.048  Sum_probs=110.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh-----
Q psy16666         23 FLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM-----   97 (167)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-----   97 (167)
                      +........ ..+.+|.+.++. .+. .+.+++.+...++..++.+++|+++||+|||+++..+.++.+++....     
T Consensus        38 ~~~~~~~~~-~~~~~~~~~~~~-~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~  114 (451)
T 1pw4_A           38 AAYYLVRKN-FALAMPYLVEQG-FSR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPW  114 (451)
T ss_dssp             HHHHHHHTS-HHHHHHHTTSST-TCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHh-ccH-hHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhh
Confidence            333333333 577888888887 554 456999999999999999999999999999999999977777665554     


Q ss_pred             -hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         98 -TLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        98 -~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                       ..+.+.+++.+++.|++. ...+...+++.|++|+++|++++++.+...++  .+||.+++.+.+.
T Consensus       115 ~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  181 (451)
T 1pw4_A          115 ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  181 (451)
T ss_dssp             HHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             336778888999999865 56789999999999999999999999998888  8999999987654

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.70  E-value=2.8e-16  Score=115.22  Aligned_cols=141  Identities=16%  Similarity=0.117  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh
Q psy16666         17 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL   96 (167)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   96 (167)
                      .+....++....... ..+.+|.+.++.+.++. +.+++.+...++..++.+++|+++||+|||+++..+.....++...
T Consensus         4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            4 MLVLLVAVGQMAQTI-YIPAIADMARDLNVREG-AVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHHHTTSSSTTH-HHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HhhhhHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            344455555666555 68888988888776664 5699999999999999999999999999999999887777766555


Q ss_pred             hh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666         97 MT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus        97 ~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      ..  .+.+.+++.+++.|++. ...+...+++.|..|+|+|+++++..+....+  .++|.+++++.+
T Consensus        82 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  149 (375)
T 2gfp_A           82 AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT  149 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            44  37888888999999865 56788999999999999999999999998888  899999988764

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.69  E-value=8.3e-16  Score=117.27  Aligned_cols=150  Identities=12%  Similarity=0.040  Sum_probs=115.6

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCC------chHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-cchH
Q psy16666          9 GIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPD------HTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-GRKL   81 (167)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~   81 (167)
                      .++++.++.+.+..++..+++.. ..+.++.|+++..+      .+..+.+++.+...++..++.+++|+++||+ |||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~   86 (524)
T 2xut_A            8 PKWPRQIPYIIASEACERFSFYG-MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN   86 (524)
T ss_dssp             -----CCTHHHHHHHHHHHHHHH-HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            34455666677777777777655 57788888766555      5556779999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHhhHHhhh--H-HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHH---HHHHHhh--hhccc
Q psy16666         82 FLLITVFVTCLPIPLMT--L-DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGL---VSSETNQ--YSSPS  152 (167)
Q Consensus        82 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~--~~gp~  152 (167)
                      ++..+.++..++.....  . +.+.+++.+++.|++. ...+...+++.|.+|+++|++..+.   .+...++  .+||.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~  166 (524)
T 2xut_A           87 TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASL  166 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988777766655543  3 6788888899999865 5668999999999999999776665   7776666  88888


Q ss_pred             hhhHhhh
Q psy16666        153 LTPFYYY  159 (167)
Q Consensus       153 i~g~l~~  159 (167)
                      +++.+.+
T Consensus       167 ~~~~l~~  173 (524)
T 2xut_A          167 SMPLLLK  173 (524)
T ss_dssp             TSTHHHH
T ss_pred             HHHHHhc
Confidence            8888764

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.68  E-value=2e-15  Score=114.15  Aligned_cols=109  Identities=15%  Similarity=0.061  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh--------------------hhHHHHHHHHHHH
Q psy16666         50 LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--------------------MTLDTWWFFAMIS  109 (167)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~  109 (167)
                      .+.+++.+.+.++..++++++|+++||+|||+++.++.++..++...                    ++.+.+.++++|+
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~  134 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI  134 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence            45588889999999999999999999999999999987766665443                    2347889999999


Q ss_pred             HHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666        110 ISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus       110 ~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      ++|++ ++..+....+++|..|+++|++..+..+.....  ..++.++....
T Consensus       135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~  186 (491)
T 4gc0_A          135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA  186 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence            99996 467789999999999999999999998888777  55555554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.54  E-value=7e-13  Score=99.02  Aligned_cols=149  Identities=5%  Similarity=-0.013  Sum_probs=114.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh--cchHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW--GRKLFLLITVF   88 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~~~   88 (167)
                      +++.++...+..++....... ...++|.|.++..+.+..+.++..+...++..++.++.|++.||+  |||+.+..+..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~  328 (451)
T 1pw4_A          250 PNKLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFM  328 (451)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHH-HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence            345666666666666666545 578899999886555666779999999999999999999999999  99998877755


Q ss_pred             HHH-hhHHhhhH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhh
Q psy16666         89 VTC-LPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYY  159 (167)
Q Consensus        89 ~~~-~~~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~  159 (167)
                      +.. ++...+..    +.+......++.|++ +...+...+++.|..|+++|+++.|+.+...++   .++|.+.|.+.+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~  408 (451)
T 1pw4_A          329 TLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD  408 (451)
T ss_dssp             HHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444 44443332    455566666677764 456677889999999999999999999887654   889999998876


Q ss_pred             h
Q psy16666        160 C  160 (167)
Q Consensus       160 ~  160 (167)
                      .
T Consensus       409 ~  409 (451)
T 1pw4_A          409 F  409 (451)
T ss_dssp             S
T ss_pred             h
Confidence            4

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.49  E-value=4.2e-12  Score=94.53  Aligned_cols=148  Identities=7%  Similarity=-0.019  Sum_probs=109.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHhHHHHHHHHH-HhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666         11 GEPSVYHALVVIFLEFFAWGLLTMPIISVL-NRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV   89 (167)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (167)
                      +++.++...+..++....... ...++|.| .++..+.+..+.+...+...++..++.++.|+++||+|||+++..+..+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~  334 (438)
T 3o7q_A          256 RIRHWRWAVLAQFCYVGAQTA-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI  334 (438)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hChHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            345666666666666555544 57888999 8887566666779999999999999999999999999999999888776


Q ss_pred             HHhhHHhhhH--HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh-hhccchhhHhhhhc
Q psy16666         90 TCLPIPLMTL--DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ-YSSPSLTPFYYYCN  161 (167)
Q Consensus        90 ~~~~~~~~~~--~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~gp~i~g~l~~~~  161 (167)
                      ..+.......  +.+. ....++.|++ +...+...++..|..|++ |+++.++....... .++|.+.|.+.+..
T Consensus       335 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~l~~~~  408 (438)
T 3o7q_A          335 AMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_dssp             HHHHHHHHHHCCHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6665555443  3333 3334555654 456788899999999876 88888877643322 89999999988754

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.48  E-value=1.7e-12  Score=96.64  Aligned_cols=127  Identities=11%  Similarity=0.013  Sum_probs=91.5

Q ss_pred             HHHHHHHHhhCCCc---hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHH
Q psy16666         34 MPIISVLNRTFPDH---TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMI  108 (167)
Q Consensus        34 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  108 (167)
                      ...+|.|.++....   +....++..+...+...++.++.|+++||+|||+++..+..+.++....+..  +.+.+.+..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (417)
T 2cfq_A          240 DQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILK  319 (417)
T ss_dssp             HHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            34567776654332   2334577777788888899999999999999999988876666665444432  455555555


Q ss_pred             HHHHHH-HHHHHHHHHHHhccccchhhHHHHHHH-HHHHhh--hhccchhhHhhhh
Q psy16666        109 SISGVF-AVTFSVVFAYVADVTEEHERSLAYGLV-SSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       109 ~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~--~~gp~i~g~l~~~  160 (167)
                      ++.++. ....+....++.|.+|++.|+++.+.. +...++  .++|.++|.+.+.
T Consensus       320 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~  375 (417)
T 2cfq_A          320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES  375 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh
Confidence            555554 344556788999999999999999984 666666  8999999988753

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.39  E-value=2.9e-13  Score=100.85  Aligned_cols=151  Identities=16%  Similarity=0.263  Sum_probs=94.9

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHH
Q psy16666          9 GIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVF   88 (167)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (167)
                      ..++|+++......++....++. ..+++|.|+++..+.+..+.|++.+...++..++++++|+++||+|||+++..+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~   81 (417)
T 2cfq_A            3 YLKNTNFWMFGLFFFFYFFIMGA-YFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT   81 (417)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHH-HTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            35677888777777777766655 68889999877545555567999999999999999999999999999999988866


Q ss_pred             HHHhhHH-hh--hHHH---HHHHHHHHHHHHH-HHHHHHHHHHHhccccc--hhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666         89 VTCLPIP-LM--TLDT---WWFFAMISISGVF-AVTFSVVFAYVADVTEE--HERSLAYGLVSSETNQ--YSSPSLTPFY  157 (167)
Q Consensus        89 ~~~~~~~-~~--~~~~---~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~--~~gp~i~g~l  157 (167)
                      ...+... .+  ....   ......+.+.+.. +...+.....+.+..++  ++|+...+..+....+  .++|.+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l  161 (417)
T 2cfq_A           82 GMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIM  161 (417)
T ss_dssp             HTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            5544221 11  1110   0112223333321 11222222223333322  3456566666555555  7888888877


Q ss_pred             hhh
Q psy16666        158 YYC  160 (167)
Q Consensus       158 ~~~  160 (167)
                      .+.
T Consensus       162 ~~~  164 (417)
T 2cfq_A          162 FTI  164 (417)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.31  E-value=2.6e-12  Score=94.04  Aligned_cols=147  Identities=11%  Similarity=0.043  Sum_probs=101.7

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHH-HHH
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV-FVT   90 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~-~~~   90 (167)
                      +|+++...+..++....... ...++|.+.++..+.+..+.+...+...++..++.+..+++.||++++....... ...
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~  276 (375)
T 2gfp_A          198 NSGFNCYLLMLIGGLAGIAA-FEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLA  276 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555444 4677787777754556667799999999999999999999999998833222222 111


Q ss_pred             HhhHHhhhH----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666         91 CLPIPLMTL----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus        91 ~~~~~~~~~----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~  160 (167)
                      .........    +.+...+..++.|++. ...+...+++.|..| |+|+++.++.+...++  .++|.+.|.+.+.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  352 (375)
T 2gfp_A          277 GLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT  352 (375)
T ss_dssp             SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred             HHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            111112221    4455556667777754 456788899999998 8899999999998888  8899999887653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.27  E-value=6.1e-12  Score=95.13  Aligned_cols=144  Identities=10%  Similarity=0.128  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHH-----HHHHH
Q psy16666         15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLL-----ITVFV   89 (167)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-----~~~~~   89 (167)
                      .....+..++....+.. ....+|.+.++..+.+....+...+...+...++.++.|++.||+|||+...     .+..+
T Consensus       285 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          285 YIPLFIAAVLFWAIEEQ-GSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             HHHHHHHHHHHHHHHGG-GGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh-ccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence            34444444444444433 4666777877655444233467777888888999999999999999886543     55555


Q ss_pred             HHhhHHhhhH-----------HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhh
Q psy16666         90 TCLPIPLMTL-----------DTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTP  155 (167)
Q Consensus        90 ~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g  155 (167)
                      ..++...+..           +.+......++.|++.+ ..+..++++.|..|+++|+++.|+.+....+  .++|.+.+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~  443 (491)
T 4aps_A          364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVT  443 (491)
T ss_dssp             HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554444332           44555666677777554 4678899999999999999999999988888  88888888


Q ss_pred             Hhhh
Q psy16666        156 FYYY  159 (167)
Q Consensus       156 ~l~~  159 (167)
                      .+.+
T Consensus       444 ~~~~  447 (491)
T 4aps_A          444 LYNA  447 (491)
T ss_dssp             GGGG
T ss_pred             HHhc
Confidence            7754

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.22  E-value=1.1e-09  Score=82.67  Aligned_cols=120  Identities=13%  Similarity=0.040  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH------HHHHHHH
Q psy16666         33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL------DTWWFFA  106 (167)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~~  106 (167)
                      ...+.|.+.++.+..+. ..........+...++.++.+++.||+|||+.++.+.....++...+..      +.+..++
T Consensus       296 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  374 (491)
T 4gc0_A          296 VLYYAPEVFKTLGASTD-IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  374 (491)
T ss_dssp             HHHHHHHHHHHSSCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHhcchHHHHhcCCCcc-chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence            35555666666665554 3356667778889999999999999999999998886666555444322      2222222


Q ss_pred             HHHH-HHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccch
Q psy16666        107 MISI-SGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSL  153 (167)
Q Consensus       107 ~~~~-~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i  153 (167)
                      ..++ ... ..+..+..+.+.+|++|++.|+++.|+.+....+  .++|.+
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~  425 (491)
T 4gc0_A          375 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWT  425 (491)
T ss_dssp             HHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222 222 2345567889999999999999999998877666  444443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.44  E-value=1.1e-07  Score=72.46  Aligned_cols=107  Identities=7%  Similarity=0.017  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhh----hhhcc----hHHHHHHHHHHHhhHHhhhH-----------HHHHHHHHHHHHHH
Q psy16666         53 GLIMGIKGFLSFLSAPLIGALS----DLWGR----KLFLLITVFVTCLPIPLMTL-----------DTWWFFAMISISGV  113 (167)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~g~l~----dr~g~----r~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~  113 (167)
                      +.......++..+..++.+++.    ||.|+    ++.+..+..+.+++...+..           +.+++.+..++.|+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  417 (524)
T 2xut_A          338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF  417 (524)
T ss_dssp             HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence            4555555566667777777764    55443    24455555555554444322           44556666677777


Q ss_pred             HH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666        114 FA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY  159 (167)
Q Consensus       114 ~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~  159 (167)
                      +. ...+..++++.|..|+++|++++|+.+...++  .+||.+.|.+.+
T Consensus       418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            54 56678899999999999999999999998888  889998887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	167
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	6e-04

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 6e-04
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 1/110 (0%)

Query: 13  PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGA 72
            + +   +  F  FF  G    P   +        +    G+I       S L  PL G 
Sbjct: 7   TNFWMFGLFFFFYFFIMGAY-FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGL 65

Query: 73  LSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVF 122
           LSD  G + +LL  +    +      +  +      +I     V    + 
Sbjct: 66  LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLG 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.73
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.52
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.39
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.34

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=4.4e-17  Score=119.52  Aligned_cols=127  Identities=13%  Similarity=0.059  Sum_probs=102.9

Q ss_pred             HHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH------HHHHHHHHHH
Q psy16666         36 IISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL------DTWWFFAMIS  109 (167)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  109 (167)
                      ....++++.+.++ .+.|++.+...++..++++++|+++||+|||+++..+.++..++..+.+.      +.+.+++.++
T Consensus        46 ~~~p~~~~~g~s~-~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (447)
T d1pw4a_          46 LAMPYLVEQGFSR-GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF  124 (447)
T ss_dssp             HHHHHTTSSTTCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHH
T ss_pred             HHHHHHHHhCcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHH
Confidence            3334556665555 46699999999999999999999999999999999997777666555432      4567888889


Q ss_pred             HHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhccc
Q psy16666        110 ISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCNNK  163 (167)
Q Consensus       110 ~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~~  163 (167)
                      +.|++. ...+...+++.|++|+++|++++++.+....+  .++|.+++.+.....+
T Consensus       125 ~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~  181 (447)
T d1pw4a_         125 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND  181 (447)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred             HHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhc
Confidence            999864 56788999999999999999999999998888  8888888877665443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=2.2e-14  Score=103.08  Aligned_cols=151  Identities=17%  Similarity=0.243  Sum_probs=98.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666         10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV   89 (167)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   89 (167)
                      .|+|++|.+.+..++..+..+. ..|++|.|+++..+.+..++|++.++..++..++++++|+++||+|||++++.+...
T Consensus         4 lkn~~~~~l~~~~f~~~~~~~~-~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~   82 (417)
T d1pv7a_           4 LKNTNFWMFGLFFFFYFFIMGA-YFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITG   82 (417)
T ss_dssp             HHSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            4788999998888888888776 689999988775555556779999999999999999999999999999999888666


Q ss_pred             HHhhHHhhhH--HHHH----HHHHHHHHHHH-HHHHHHHHHHHhccccc--hhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666         90 TCLPIPLMTL--DTWW----FFAMISISGVF-AVTFSVVFAYVADVTEE--HERSLAYGLVSSETNQ--YSSPSLTPFYY  158 (167)
Q Consensus        90 ~~~~~~~~~~--~~~~----~~~~~~~~g~~-~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~--~~gp~i~g~l~  158 (167)
                      ..+....+..  +...    .+....+.+.. +...........+..++  +++....+........  .++|.+++.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  162 (417)
T d1pv7a_          83 MLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF  162 (417)
T ss_dssp             HHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccc
Confidence            6555444332  2111    22223333322 22222222222222222  2333444444444444  77888888776


Q ss_pred             hhc
Q psy16666        159 YCN  161 (167)
Q Consensus       159 ~~~  161 (167)
                      +..
T Consensus       163 ~~~  165 (417)
T d1pv7a_         163 TIN  165 (417)
T ss_dssp             HHC
T ss_pred             ccc
Confidence            543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=2e-11  Score=88.97  Aligned_cols=149  Identities=7%  Similarity=-0.037  Sum_probs=105.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHH---
Q psy16666         12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVF---   88 (167)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~---   88 (167)
                      ++.++......++....... ...+.|.|.++..+.+..+.+.......+...++.+..|++.||++||+.......   
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH-HHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhc-chhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHH
Confidence            44555555555555544434 57788999988877777788999999999999999999999999997654333321   


Q ss_pred             HHHhhHHhhh----HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhhh
Q psy16666         89 VTCLPIPLMT----LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYYC  160 (167)
Q Consensus        89 ~~~~~~~~~~----~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~~  160 (167)
                      +.........    .+.+...+..++.|+. .+..+....+..|.+|+++|+++.|+.+...++   ..+|.+.|.+.+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~  406 (447)
T d1pw4a_         327 LVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF  406 (447)
T ss_dssp             HHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122222211    1455666666667764 456678889999999999999999998876655   6688888888764


Q ss_pred             c
Q psy16666        161 N  161 (167)
Q Consensus       161 ~  161 (167)
                      .
T Consensus       407 ~  407 (447)
T d1pw4a_         407 F  407 (447)
T ss_dssp             S
T ss_pred             h
Confidence            3

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.7e-11  Score=87.70  Aligned_cols=113  Identities=12%  Similarity=0.022  Sum_probs=91.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy16666         48 TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVF-AVTFSVVFAY  124 (167)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~-~~~~~~~~~~  124 (167)
                      +....+.......++..++....+++.||.|+|+.+..+..+..+....+..  +.+...+..++.|+. +...+...++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~  336 (417)
T d1pv7a_         257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            3445567778888999999999999999999999999887777766655543  677777777888875 4567889999


Q ss_pred             HhccccchhhHHHHHHHHH-HHhh--hhccchhhHhhhh
Q psy16666        125 VADVTEEHERSLAYGLVSS-ETNQ--YSSPSLTPFYYYC  160 (167)
Q Consensus       125 ~~~~~~~~~r~~~~~~~~~-~~~~--~~gp~i~g~l~~~  160 (167)
                      +.|.+|+++|+++.+.... ...+  .++|.++|++.+.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~  375 (417)
T d1pv7a_         337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES  375 (417)
T ss_dssp             HHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998654 4445  8899999998764