Psyllid ID: psy16691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MMKNEKNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNHHISALTQ
Secondary Structure (PSIPRED)
cccccccccccccEEEcccEEEEccccccccccccccEEEEEcccccEEEEEEEEEEEcccccccccEEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEccccccccccccEEEEEEEcccccEEEEEEEEEEcccccccEEEEEEEEcccccccccccccccccccccc
Coil and Loop (DISEMBL)
mmkneknpvnantsltgtegfitspafpsnyannlDYWVTIRGPEETRIVLAFLRLdlepqseclYDYVEMYhaasvtpptrlcgnhhisaltq
Flexible Loop (DISEMBL)
mmkneknpvnantsltgtegFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASvtpptrlcgNHHISALTQ
Low Complexity Region (SEG)
MMKNEKNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNHHISALTQ
Disordered region (IsUnstruct)
*******************GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNH*******
Disordered Region (DISOPRED)
****EKNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNHHIS**T*
Disordered Region (DISEMBL)
*********NANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNHHISALTQ
Disordered Region (DISPRO)
*****K*PVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVT***R************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMKNEKNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNHHISALTQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
Q5R1W3	705	Complement C1r subcompone	yes	N/A	0.680	0.090	0.409	3e-07
P00736	705	Complement C1r subcompone	yes	N/A	0.680	0.090	0.409	4e-07
Q5R544	705	Complement C1r subcompone	no	N/A	0.691	0.092	0.402	4e-07
O70244	3623	Cubilin OS=Rattus norvegi	yes	N/A	0.829	0.021	0.337	5e-07
P13497	986	Bone morphogenetic protei	no	N/A	0.893	0.085	0.302	6e-07
P98068	616	Protein SpAN OS=Strongylo	no	N/A	0.840	0.128	0.354	7e-07
P98063	991	Bone morphogenetic protei	yes	N/A	0.765	0.072	0.337	9e-07
Q8QFX6	923	Neuropilin-1a OS=Danio re	no	N/A	0.776	0.079	0.358	1e-06
Q8BQH6	427	CUB domain-containing pro	no	N/A	0.691	0.152	0.352	1e-06
Q5VXM1	449	CUB domain-containing pro	no	N/A	0.702	0.146	0.347	2e-06

>sp|Q5R1W3|C1R_PANTR Complement C1r subcomponent OS=Pan troglodytes GN=C1R PE=2 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP 79
          G +TSP FP  Y NN +    I  P   R+ L F + DLEP   C YDYV++  +A    
Sbjct: 27 GEVTSPLFPKPYPNNFETTTVITVPTGYRVKLVFQQFDLEPSEGCFYDYVKI--SADKKS 84

Query: 80 PTRLCG 85
            R CG
Sbjct: 85 LGRFCG 90

C1r B chain is a serine protease that combines with C1q and C1s to form C1, the first component of the classical pathway of the complement system.
Pan troglodytes (taxid: 9598)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 4EC: 1

>sp|P00736|C1R_HUMAN Complement C1r subcomponent OS=Homo sapiens GN=C1R PE=1 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP 79
          G +TSP FP  Y NN +    I  P   R+ L F + DLEP   C YDYV++  +A    
Sbjct: 27 GEVTSPLFPKPYPNNFETTTVITVPTGYRVKLVFQQFDLEPSEGCFYDYVKI--SADKKS 84

Query: 80 PTRLCG 85
            R CG
Sbjct: 85 LGRFCG 90

C1r B chain is a serine protease that combines with C1q and C1s to form C1, the first component of the classical pathway of the complement system.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q5R544|C1R_PONAB Complement C1r subcomponent OS=Pongo abelii GN=C1R PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP 79
          G +TSP FP  Y NN +    I  P   R+ L F + DLEP   C YDYV++  +A    
Sbjct: 27 GEVTSPLFPKPYPNNFETTTVITVPTGYRVKLVFQQFDLEPSEGCFYDYVKI--SADKKS 84

Query: 80 PTRLCGN 86
            R CG 
Sbjct: 85 LGRFCGQ 91

C1r B chain is a serine protease that combines with C1q and C1s to form C1, the first component of the classical pathway of the complement system.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 4

EC: 1

>sp|O70244|CUBN_RAT Cubilin OS=Rattus norvegicus GN=Cubn PE=1 SV=2

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 9    VNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDY 68
             + N     T G + SP +P NY NNLD  + +R P+   I L F    LE   +C+ D+
Sbjct: 3393 ADCNREYNQTFGNLKSPGWPQNYDNNLDCTIILRAPQNHSISLFFYWFQLEDSRQCMNDF 3452

Query: 69   VEMYHAASVTPP--TRLCGN 86
            +E+ +  S T P   + C N
Sbjct: 3453 LEVRNGGSSTSPLLDKYCSN 3472

Cotransporter which plays a role in lipoprotein, vitamin and iron metabolism, by facilitating their uptake. Binds to ALB, MB, Kappa and lambda-light chains, TF, hemoglobin, GC, SCGB1A1, APOA1, high density lipoprotein, and the GIF-cobalamin complex. The binding of all ligands requires calcium. Serves as important transporter in several absorptive epithelia, including intestine, renal proximal tubules and embryonic yolk sac. Interaction with LRP2 mediates its trafficking throughout vesicles and facilitates the uptake of specific ligands like GC, hemoglobin, ALB, TF and SCGB1A1. Interaction with AMN controls its trafficking to the plasma membrane and facilitates endocytosis of ligands. May play an important role in the development of the peri-implantation embryo through internalization of APOA1 and cholesterol. Binds to LGALS3 at the maternal-fetal interface.

Rattus norvegicus (taxid: 10116)

>sp|P13497|BMP1_HUMAN Bone morphogenetic protein 1 OS=Homo sapiens GN=BMP1 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)

Query: 3   KNEKNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQS 62
           K++      +  +T T G ITSP +P  Y +  +    I      R+ L F+ +D+E Q 
Sbjct: 739 KHDCKEAGCDHKVTSTSGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFMEMDIESQP 798

Query: 63  ECLYDYVEMYHAASVTPPT--RLCGN 86
           EC YD++E++       P   R CG+
Sbjct: 799 ECAYDHLEVFDGRDAKAPVLGRFCGS 824

Cleaves the C-terminal propeptides of procollagen I, II and III. Induces cartilage and bone formation. May participate in dorsoventral patterning during early development by cleaving chordin (CHRD).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 1

EC: 9

>sp|P98068|SPAN_STRPU Protein SpAN OS=Strongylocentrotus purpuratus GN=SPAN PE=2 SV=1

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%)

Query: 8   PVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYD 67
           P + +   T   G ITSP +PSNY +N      I GP  + I L FL +++E ++ C YD
Sbjct: 337 PADCSYRFTEMTGEITSPNYPSNYEDNTACVYEIEGPYGSTIELTFLDMEIETETLCRYD 396

Query: 68  YVEMYHAASVTPPTRLCGN 86
            VE+      +   + CGN
Sbjct: 397 AVEVRKDDINSIGEKFCGN 415

Strongylocentrotus purpuratus (taxid: 7668)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|P98063|BMP1_MOUSE Bone morphogenetic protein 1 OS=Mus musculus GN=Bmp1 PE=1 SV=2

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 15  LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHA 74
           +T T G ITSP +P  Y +  +    I      R+ L F+ +D+E Q EC YD++E++  
Sbjct: 756 VTSTSGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFVEMDIESQPECAYDHLEVFDG 815

Query: 75  ASVTPPT--RLCGN 86
                P   R CG+
Sbjct: 816 RDAKAPVLGRFCGS 829

Cleaves the C-terminal propeptides of procollagen I, II and III. Induces cartilage and bone formation. May participate in dorsoventral patterning during early development by cleaving chordin (CHRD).

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 1

EC: 9

>sp|Q8QFX6|NRP1A_DANRE Neuropilin-1a OS=Danio rerio GN=nrp1a PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 8/81 (9%)

Query: 15  LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSE------CLYDY 68
            T + G I SP FP  Y NNLD    I  P+ + IVL F   +LEP ++      C YD 
Sbjct: 149 FTSSSGVIKSPGFPEKYPNNLDCTFMIFAPKMSEIVLEFESFELEPDTQPPAGVFCRYDR 208

Query: 69  VEMYHAASVTPP--TRLCGNH 87
           +E++       P   R CG +
Sbjct: 209 LEIWDGFPGVGPYIGRYCGQN 229

Receptor involved in the development of the cardiovascular system, in angiogenesis, in the formation of certain neuronal circuits and in organogenesis outside the nervous system. It mediates the chemorepulsant activity of semaphorins. Regulates angiogenesis through a VEGF-dependent pathway.

Danio rerio (taxid: 7955)

>sp|Q8BQH6|CDCP2_MOUSE CUB domain-containing protein 2 OS=Mus musculus GN=Cdcp2 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 36/71 (50%)

Query: 15  LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHA 74
           LTG  G ++SP +P+NY NN++    IR      + L F+   +E   EC+YDYV +  A
Sbjct: 149 LTGLSGVLSSPEYPNNYPNNVECHWLIRASGPAAVKLVFVDFQVEGSDECMYDYVAVLGA 208

Query: 75  ASVTPPTRLCG 85
                    CG
Sbjct: 209 PGPAHGHHYCG 219

Mus musculus (taxid: 10090)

>sp|Q5VXM1|CDCP2_HUMAN CUB domain-containing protein 2 OS=Homo sapiens GN=CDCP2 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%)

Query: 15  LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHA 74
           LTG  G +TSP +P+NY N+++    IR      + L F+   +E   EC YDYV +   
Sbjct: 149 LTGLSGVLTSPEYPNNYPNSMECHWVIRAAGPAHVKLVFVDFQVEGNEECTYDYVAVLGG 208

Query: 75  ASVTPPTRLCGN 86
              T     CG+
Sbjct: 209 PGPTRGHHYCGS 220

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
242019587	1767	neurogenic locus notch, putative [Pedicu	0.840	0.044	0.481	2e-15
189235092	2437	PREDICTED: similar to notch homolog 5 [T	0.776	0.029	0.443	3e-15
270004851	2033	hypothetical protein TcasGA2_TC003136 [T	0.776	0.035	0.443	3e-15
328697272	2340	PREDICTED: hypothetical protein LOC10016	0.617	0.024	0.516	7e-13
241275838	1389	neurogenic locus notch, putative [Ixodes	0.872	0.059	0.439	1e-12
347963839	2504	AGAP000443-PA [Anopheles gambiae str. PE	0.638	0.023	0.5	1e-11
357629211	1751	hypothetical protein KGM_16172 [Danaus p	0.638	0.034	0.466	3e-10
449670264	1193	PREDICTED: cubilin-like [Hydra magnipapi	0.797	0.062	0.402	6e-09
396085024	693	complement component 1S [Leucoraja erina	0.819	0.111	0.405	1e-08
196000326	3339	hypothetical protein TRIADDRAFT_53561 [T	0.776	0.021	0.413	1e-07

>gi|242019587|ref|XP_002430241.1| neurogenic locus notch, putative [Pediculus humanus corporis] gi|212515348|gb|EEB17503.1| neurogenic locus notch, putative [Pediculus humanus corporis]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 52/79 (65%)

Query: 9   VNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDY 68
           +N N ++ GTEG I SP +P++Y NNLDY++ I GP  +RIV+ F ++DLE Q ECLYDY
Sbjct: 159 LNLNKTVNGTEGQIMSPGYPNSYYNNLDYFIRIVGPVWSRIVIVFTKIDLEYQIECLYDY 218

Query: 69  VEMYHAASVTPPTRLCGNH 87
           +E+          R CGN 
Sbjct: 219 IEIVSTGGKKSSVRWCGNK 237

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235092|ref|XP_001809017.1| PREDICTED: similar to notch homolog 5 [Tribolium castaneum]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 54/79 (68%)

Query: 9   VNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDY 68
           +N N ++ G+EG +TSP +P +Y N+LD+ V I GP+ TR+V+ FL++D+E Q ECLYD+
Sbjct: 779 INFNRTVNGSEGSLTSPYYPDHYYNHLDFSVRILGPDRTRLVVKFLKIDIEHQLECLYDF 838

Query: 69  VEMYHAASVTPPTRLCGNH 87
           VE+     +    + CG H
Sbjct: 839 VELSSGGQIGDAVKFCGTH 857

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004851|gb|EFA01299.1| hypothetical protein TcasGA2_TC003136 [Tribolium castaneum]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 54/79 (68%)

Query: 9   VNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDY 68
           +N N ++ G+EG +TSP +P +Y N+LD+ V I GP+ TR+V+ FL++D+E Q ECLYD+
Sbjct: 382 INFNRTVNGSEGSLTSPYYPDHYYNHLDFSVRILGPDRTRLVVKFLKIDIEHQLECLYDF 441

Query: 69  VEMYHAASVTPPTRLCGNH 87
           VE+     +    + CG H
Sbjct: 442 VELSSGGQIGDAVKFCGTH 460

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697272|ref|XP_001943623.2| PREDICTED: hypothetical protein LOC100167178 [Acyrthosiphon pisum]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 47/60 (78%)

Query: 10  NANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYV 69
           N NT++TG +G ITS  +P+NY +NLDYW+ + GP ++RIV  F  +++EPQ++CLYD+V
Sbjct: 877 NLNTTMTGVKGIITSLNYPANYYHNLDYWIHVVGPYQSRIVFQFDSINIEPQADCLYDFV 936

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241275838|ref|XP_002406710.1| neurogenic locus notch, putative [Ixodes scapularis] gi|215496942|gb|EEC06582.1| neurogenic locus notch, putative [Ixodes scapularis]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 51/82 (62%)

Query: 8  PVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYD 67
          P + N++LT   G +TS   P++Y N+L Y V+I GP  +RI L+F RLDLE Q+ CLYD
Sbjct: 2  PTDMNSTLTAPSGTLTSLNHPAHYLNDLRYSVSIVGPPGSRIYLSFSRLDLEWQASCLYD 61

Query: 68 YVEMYHAASVTPPTRLCGNHHI 89
          Y+E+          R+CG H +
Sbjct: 62 YLELVSPGEAKESVRICGQHEL 83

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963839|ref|XP_310650.4| AGAP000443-PA [Anopheles gambiae str. PEST] gi|333467010|gb|EAA06558.5| AGAP000443-PA [Anopheles gambiae str. PEST]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 41/60 (68%)

Query: 12  NTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEM 71
           N +LTGTEG + SP +P+ Y    D+W+ I  PE  RI++ F +LDLE Q ECLYDY+ +
Sbjct: 884 NQTLTGTEGHLLSPGYPNPYPAQTDFWIRIVAPEHRRIIIQFQKLDLEHQDECLYDYISL 943

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357629211|gb|EHJ78130.1| hypothetical protein KGM_16172 [Danaus plexippus]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 43/60 (71%)

Query: 12  NTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEM 71
           NT++ GT G + SP +P  Y N+LDYWV +R   +TR+V  F  ++LE Q++CLYD++E+
Sbjct: 205 NTTVEGTSGTLRSPNYPGLYDNDLDYWVHVRSAPDTRLVFVFTSINLEYQNDCLYDFIEV 264

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449670264|ref|XP_002170427.2| PREDICTED: cubilin-like [Hydra magnipapillata]

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 15  LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHA 74
           + G  G ITSP FP+NY+ N D    +  PE T IVL F+ +D+EP  +C YDY+ +   
Sbjct: 421 MYGRSGMITSPNFPNNYSPNQDCNWYLTSPEGTLIVLTFIEIDIEPAGDCYYDYLIIRDG 480

Query: 75  ASVTPPT--RLCGNHHI 89
              + P   R CGN+ +
Sbjct: 481 LKSSSPLLGRFCGNNRV 497

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|396085024|gb|AFN85001.1| complement component 1S [Leucoraja erinacea]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 8  PVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYD 67
          PV+A  SL G  GFI SP FP  Y+N+L     I  P    I L    +DLE  ++C YD
Sbjct: 12 PVSATISLRGLHGFIRSPGFPQGYSNDLSLSWEISVPPGYGINLRLTEVDLESSAQCAYD 71

Query: 68 YVEMYHAASVTPPTRLCGN 86
          Y+E+      +PP  +CG+
Sbjct: 72 YIEILTDEEHSPP--ICGD 88

Source: Leucoraja erinacea

Species: Leucoraja erinacea

Genus: Leucoraja

Family: Rajidae

Order: Rajiformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|196000326|ref|XP_002110031.1| hypothetical protein TRIADDRAFT_53561 [Trichoplax adhaerens] gi|190588155|gb|EDV28197.1| hypothetical protein TRIADDRAFT_53561 [Trichoplax adhaerens]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 15  LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHA 74
           LT + G I SP +P  Y NN +   TI+ P   RI L +  +D+E Q +C +DYVE+ + 
Sbjct: 695 LTASSGSIVSPNYPGKYPNNAECIWTIQMPVGARITLNWQNIDIEQQDQCNFDYVELRNG 754

Query: 75  ASVTPP--TRLCGNH 87
            S T P   R CGN+
Sbjct: 755 NSTTAPFVGRYCGNN 769

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
UNIPROTKB|Q5VXM1	449	CDCP2 "CUB domain-containing p	0.755	0.158	0.369	4.8e-08
ZFIN|ZDB-GENE-041014-370	487	si:ch211-237l4.5 "si:ch211-237	0.925	0.178	0.372	5.5e-08
ZFIN|ZDB-GENE-060130-154	685	masp2 "mannan-binding lectin s	0.819	0.112	0.392	7e-08
UNIPROTKB|F1P903	705	C1R "Uncharacterized protein"	0.680	0.090	0.439	7.3e-08
UNIPROTKB|F1PNG7	719	C1R "Uncharacterized protein"	0.680	0.089	0.439	7.5e-08
MGI|MGI:3045328	427	Cdcp2 "CUB domain containing p	0.744	0.163	0.361	9.3e-08
UNIPROTKB|F1RMB2	1009	BMP1 "Uncharacterized protein"	0.893	0.083	0.325	1.2e-07
UNIPROTKB|F1PGC4	858	BMP1 "Uncharacterized protein"	0.893	0.097	0.313	1.5e-07
UNIPROTKB|F5H3N3	156	C1R "Complement C1r subcompone	0.542	0.326	0.450	1.8e-07
UNIPROTKB|E2RJJ6	988	BMP1 "Uncharacterized protein"	0.893	0.085	0.313	1.8e-07

UNIPROTKB|Q5VXM1 CDCP2 "CUB domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 4.8e-08, P = 4.8e-08
 Identities = 27/73 (36%), Positives = 39/73 (53%)

Query:    15 LTGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYH 73
             LTG  G +TSP +P+NY N+++ +WV IR      + L F+   +E   EC YDYV +  
Sbjct:   149 LTGLSGVLTSPEYPNNYPNSMECHWV-IRAAGPAHVKLVFVDFQVEGNEECTYDYVAVLG 207

Query:    74 AASVTPPTRLCGN 86
                 T     CG+
Sbjct:   208 GPGPTRGHHYCGS 220

GO:0005576 "extracellular region" evidence=IEA

ZFIN|ZDB-GENE-041014-370 si:ch211-237l4.5 "si:ch211-237l4.5" [Danio rerio (taxid:7955)]

 Score = 133 (51.9 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 35/94 (37%), Positives = 46/94 (48%)

Query:     4 NEKNPV-NANTSLTGTEGFITSPAFPSNYANN--LDYWVTIRGPEETRIVLAFLRLDLEP 60
             N   PV N    L G  GF+ S  FPS Y  N    +++T+  PE   ++L+F   DLE 
Sbjct:    35 NYTRPVFNCGGDLVGDSGFVGSEGFPSFYKPNSKCTWYITV--PEGNVVMLSFRIFDLEA 92

Query:    61 QSECLYDYVEMY--HAASVTPPTRLCGNHHISAL 92
                C YDYV++Y  H+  V    R CG     AL
Sbjct:    93 DPLCRYDYVDVYNGHSNMVQKLGRFCGTFRPGAL 126

GO:0005576 "extracellular region" evidence=IEA

ZFIN|ZDB-GENE-060130-154 masp2 "mannan-binding lectin serine peptidase 2" [Danio rerio (taxid:7955)]

 Score = 134 (52.2 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 31/79 (39%), Positives = 39/79 (49%)

Query:     8 PVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYD 67
             P+     LTG  G  TSP FP+ Y NN      I  PE  R+ L F    LEP   C YD
Sbjct:    13 PLAFGLELTGLFGSFTSPNFPNVYPNNQRVVWNITAPEGHRVRLYFTYFSLEPSHRCEYD 72

Query:    68 YVEMYHAASVTPPTRLCGN 86
             YV+++   + T   R CG+
Sbjct:    73 YVQVFSEGNET--VRFCGD 89

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006956 "complement activation" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1P903 C1R "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 134 (52.2 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 29/66 (43%), Positives = 36/66 (54%)

Query:    20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP 79
             G +TSP +P  Y NNLD    I  P   R+ L F + DLEP   CLYDYV++  +A    
Sbjct:    27 GEVTSPLYPKPYPNNLDKTTVITVPTGFRVKLVFWQFDLEPSEGCLYDYVKI--SADKKT 84

Query:    80 PTRLCG 85
               R CG
Sbjct:    85 LGRFCG 90

GO:0006508 "proteolysis" evidence=IEA

GO:0006956 "complement activation" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1PNG7 C1R "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 134 (52.2 bits), Expect = 7.5e-08, P = 7.5e-08
 Identities = 29/66 (43%), Positives = 36/66 (54%)

Query:    20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP 79
             G +TSP +P  Y NNLD    I  P   R+ L F + DLEP   CLYDYV++  +A    
Sbjct:    41 GEVTSPLYPKPYPNNLDKTTVITVPTGFRVKLVFWQFDLEPSEGCLYDYVKI--SADKKT 98

Query:    80 PTRLCG 85
               R CG
Sbjct:    99 LGRFCG 104

GO:0006508 "proteolysis" evidence=IEA

GO:0006956 "complement activation" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

MGI|MGI:3045328 Cdcp2 "CUB domain containing protein 2" [Mus musculus (taxid:10090)]

 Score = 130 (50.8 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 26/72 (36%), Positives = 39/72 (54%)

Query:    15 LTGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYH 73
             LTG  G ++SP +P+NY NN++ +W+ IR      + L F+   +E   EC+YDYV +  
Sbjct:   149 LTGLSGVLSSPEYPNNYPNNVECHWL-IRASGPAAVKLVFVDFQVEGSDECMYDYVAVLG 207

Query:    74 AASVTPPTRLCG 85
             A         CG
Sbjct:   208 APGPAHGHHYCG 219

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1RMB2 BMP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 134 (52.2 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 28/86 (32%), Positives = 42/86 (48%)

Query:     3 KNEKNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQS 62
             K++      +  +T T G ITSP +P  Y +  +    I      R+ L FL +D+E Q 
Sbjct:   762 KHDCKEAGCDHKVTSTSGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFLEMDIESQP 821

Query:    63 ECLYDYVEMYHAASVTPPT--RLCGN 86
             EC YD++E+Y       P   R CG+
Sbjct:   822 ECAYDHLEVYDGRDAKAPVLGRFCGS 847

GO:0061036 "positive regulation of cartilage development" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1PGC4 BMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 132 (51.5 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 27/86 (31%), Positives = 42/86 (48%)

Query:     3 KNEKNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQS 62
             K++      +  +T T G ITSP +P  Y +  +    I      R+ L F+ +D+E Q 
Sbjct:   611 KHDCKEAGCDHKVTSTSGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFMEMDIESQP 670

Query:    63 ECLYDYVEMYHAASVTPPT--RLCGN 86
             EC YD++E+Y       P   R CG+
Sbjct:   671 ECAYDHLEVYDGRDAKAPVLGRFCGS 696

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

UNIPROTKB|F5H3N3 C1R "Complement C1r subcomponent" [Homo sapiens (taxid:9606)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 23/51 (45%), Positives = 28/51 (54%)

Query:    20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVE 70
             G +TSP FP  Y NN +    I  P   R+ L F + DLEP   C YDYV+
Sbjct:    27 GEVTSPLFPKPYPNNFETTTVITVPTGYRVKLVFQQFDLEPSEGCFYDYVK 77

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E2RJJ6 BMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 132 (51.5 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 27/86 (31%), Positives = 42/86 (48%)

Query:     3 KNEKNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQS 62
             K++      +  +T T G ITSP +P  Y +  +    I      R+ L F+ +D+E Q 
Sbjct:   741 KHDCKEAGCDHKVTSTSGTITSPNWPDKYPSKKECTWAISSTPGHRVKLTFMEMDIESQP 800

Query:    63 ECLYDYVEMYHAASVTPPT--RLCGN 86
             EC YD++E+Y       P   R CG+
Sbjct:   801 ECAYDHLEVYDGRDAKAPVLGRFCGS 826

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	94
cd00041	113	cd00041, CUB, CUB domain; extracellular domain; pr	1e-18
smart00042	102	smart00042, CUB, Domain first found in C1r, C1s, u	6e-17
pfam00431	110	pfam00431, CUB, CUB domain	2e-14

>gnl|CDD|238001 cd00041, CUB, CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast

 Score = 73.2 bits (180), Expect = 1e-18
 Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 16 TGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHA 74
            T G I+SP +P+NY NNL+  W TI  P   RI L F   DLE    C YDY+E+Y  
Sbjct: 7  ASTSGTISSPNYPNNYPNNLNCVW-TIEAPPGYRIRLTFEDFDLESSPNCSYDYLEIYDG 65

Query: 75 ASVTPPT--RLCGNHHISALT 93
           S + P   R CG+     + 
Sbjct: 66 PSTSSPLLGRFCGSTLPPPII 86

Length = 113

>gnl|CDD|214483 smart00042, CUB, Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein

 Score = 69.0 bits (169), Expect = 6e-17
 Identities = 35/70 (50%), Positives = 40/70 (57%), Gaps = 4/70 (5%)

Query: 20 GFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVT 78
          G ITSP +P +Y NNLD  W TIR P   RI L F   DLE    C YDYVE+Y   S +
Sbjct: 1  GTITSPNYPQSYPNNLDCVW-TIRAPPGYRIELQFTDFDLESSDNCEYDYVEIYDGPSAS 59

Query: 79 PPT--RLCGN 86
           P   R CG+
Sbjct: 60 SPLLGRFCGS 69

This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain. Length = 102

>gnl|CDD|215916 pfam00431, CUB, CUB domain

 Score = 62.7 bits (153), Expect = 2e-14
 Identities = 30/59 (50%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 15 LTGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMY 72
          LT + G ITSP +P++Y  N D  W TIR P   RI L F   DLE   EC YDYVE+ 
Sbjct: 5  LTESSGSITSPNYPNSYPPNKDCVW-TIRAPPGYRISLTFQDFDLEDHDECGYDYVEIR 62

Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
PF00431	110	CUB: CUB domain CUB domain entry Spermadhesins fam	99.89
cd00041	113	CUB CUB domain; extracellular domain; present in p	99.88
smart00042	102	CUB Domain first found in C1r, C1s, uEGF, and bone	99.85
KOG4586|consensus	156		99.59
KOG4292|consensus	454		99.34
KOG4292|consensus	454		98.47
PF02408	120	CUB_2: CUB-like domain; InterPro: IPR003366 This d	96.13
PF05428	311	CRF-BP: Corticotropin-releasing factor binding pro	91.46

>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork

Probab=99.89  E-value=9.3e-23  Score=114.81  Aligned_cols=82  Identities=38%  Similarity=0.680  Sum_probs=70.9

Q ss_pred             CCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCC--CeecCCCCc
Q psy16691         11 ANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP--PTRLCGNHH   88 (94)
Q Consensus        11 C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~--~~~~cG~~~   88 (94)
                      |++.++...|.|.||+||..|+.+..|.|.|.++++++|.|+|..|+++....|..|+|+|++|.....  ++++||...
T Consensus         1 Cg~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~~~~c~~d~l~v~~g~~~~~~~~~~~cg~~~   80 (110)
T PF00431_consen    1 CGGRLTNNSGIISSPNYPSNYPSNSDCTWTITAPPGHRIRLTFLSFDLESSDSCCQDYLEVYDGNDESSPLLGRFCGSSP   80 (110)
T ss_dssp             SEEEECSSEEEEESTTTTS-SSSSEEEEEEEE-STTEEEEEEEEEEEB--TTTSTSSEEEEESSSSTTSEEEEEESSSSC
T ss_pred             CcCEEECCeEEEECCCCCCCCCCCCcEeEEEEecccceeeeccccccceeeeeecccceeEEeeccccceeeeeccCCcC
Confidence            889999999999999999999999999999999999999999999999988889999999999987653  679999776


Q ss_pred             CCCC
Q psy16691         89 ISAL   92 (94)
Q Consensus        89 p~~~   92 (94)
                      |..+
T Consensus        81 ~~~i   84 (110)
T PF00431_consen   81 PPSI   84 (110)
T ss_dssp             CEEE
T ss_pred             CccE
Confidence            6554

; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....

>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast

Probab=99.88  E-value=4.5e-22  Score=112.38  Aligned_cols=82  Identities=39%  Similarity=0.707  Sum_probs=74.3

Q ss_pred             CCcEEeCC-eeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCC--CCCeecCCCC
Q psy16691         11 ANTSLTGT-EGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASV--TPPTRLCGNH   87 (94)
Q Consensus        11 C~~~~~~~-~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~--~~~~~~cG~~   87 (94)
                      |++.+... .|.|.||+||..|+++..|.|.|+++++++|.|.|.+|+|+....|..|+|+|+++...  ..++++||..
T Consensus         1 C~~~~~~~~~g~i~Sp~~p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~Cg~~   80 (113)
T cd00041           1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSPNCSYDYLEIYDGPSTSSPLLGRFCGST   80 (113)
T ss_pred             CCCEEccCCCeEEECCCCCCCCCCCCcEEEEEEcCCCCEEEEEEeCcccccCCCCCCcEEEEEcCCCCccccceeeECCC
Confidence            88888888 99999999999999999999999999999999999999999888999999999999764  3478999998


Q ss_pred             cCCCC
Q psy16691         88 HISAL   92 (94)
Q Consensus        88 ~p~~~   92 (94)
                      .|..+
T Consensus        81 ~~~~~   85 (113)
T cd00041          81 LPPPI   85 (113)
T ss_pred             CCCCE
Confidence            86554

>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein

Probab=99.85  E-value=7.5e-21  Score=106.03  Aligned_cols=72  Identities=46%  Similarity=0.777  Sum_probs=64.3

Q ss_pred             eeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCC--CCCeecCCCCcCCC
Q psy16691         20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASV--TPPTRLCGNHHISA   91 (94)
Q Consensus        20 g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~--~~~~~~cG~~~p~~   91 (94)
                      |.|.||+||..|+.+..|.|.|+++++++|.|.|..|+|+....|..|+|+|++|...  ..++++||...|+.
T Consensus         1 G~i~Sp~yP~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~Cg~~~~~~   74 (102)
T smart00042        1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSDNCEYDYVEIYDGPSASSPLLGRFCGSELPPP   74 (102)
T ss_pred             CEEeCCCCCcCCCCCCcEEEEEECCCCeEEEEEEEEEeccCCCCeeEeEEEEEeCCCCCCceeEEEecCcCCCC
Confidence            6899999999999999999999999999999999999999888899999999998752  23579999886653

This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.

>KOG4586|consensus

Probab=99.59  E-value=3.3e-15  Score=85.62  Aligned_cols=76  Identities=26%  Similarity=0.500  Sum_probs=68.2

Q ss_pred             CCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeE-eeeCCCCCCCCcEEEEEeCCCCCC--CeecCCCCcCCCC
Q psy16691         17 GTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLR-LDLEPQSECLYDYVEMYHAASVTP--PTRLCGNHHISAL   92 (94)
Q Consensus        17 ~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~-f~l~~~~~C~~d~l~i~~g~~~~~--~~~~cG~~~p~~~   92 (94)
                      ...+.+.||+||..|+++..|...|.+..-+-|.+.|.+ |.+|++-+|..|.+++.||.-+-+  +++|||...|+.+
T Consensus        47 ~n~~Iftspn~ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEps~EC~fD~iEvrDGpfGFSPlI~rfCG~~nPp~I  125 (156)
T KOG4586|consen   47 QNFNIFTSPNFPSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEPSYECPFDFIEVRDGPFGFSPLIARFCGDRNPPEI  125 (156)
T ss_pred             cccceEecCCccccCCCCcceEEeEecccccceEEeeeeeEEecccccCCCCcccccCCCcCccHHHHHHhccCCChhh
Confidence            345788999999999999999999999998889999987 899999999999999999987765  6899999998854

>KOG4292|consensus

Probab=99.34  E-value=7.9e-12  Score=84.43  Aligned_cols=74  Identities=30%  Similarity=0.522  Sum_probs=66.9

Q ss_pred             CCCCCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCC
Q psy16691          5 EKNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVT   78 (94)
Q Consensus         5 ~~~~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~   78 (94)
                      ....+.|+.+++...|.+.||+||..|+.+..|+|.+.++.++.+.+.|+.|-++.+..|.+||++...+....
T Consensus       286 ~~~~~~C~~~~~~~~G~~~Sp~yp~~y~~~l~Ct~~l~~~~g~~l~v~fh~~~~~~s~~C~~d~l~~r~~~~~~  359 (454)
T KOG4292|consen  286 TYQISDCNRTYHGKFGNLTSPGYPQNYPNNLDCTTHLTVPGGHTLVVFFHEFSIENSRECINDYLVLRNGNSGN  359 (454)
T ss_pred             CccccccccceecceeEEcCCCCcccCCCCCcceEEEEcCCCCEEEEEeecccchhhhhhccceEEeccCCCCC
Confidence            34667899999989999999999999999999999999999999999999999999999999988888776553

>KOG4292|consensus

Probab=98.47  E-value=6.3e-07  Score=61.15  Aligned_cols=67  Identities=24%  Similarity=0.376  Sum_probs=57.7

Q ss_pred             CCCcEEeC-CeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCC-CCCCCcEEEEEeCCC
Q psy16691         10 NANTSLTG-TEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQ-SECLYDYVEMYHAAS   76 (94)
Q Consensus        10 ~C~~~~~~-~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~-~~C~~d~l~i~~g~~   76 (94)
                      .|+.+++. .+|.+.+|++|..|....-|.|.+.+++++++.+++..+++.+. ..|...+|.|+++.+
T Consensus       168 ~~~~t~~~q~sg~~~~~~~p~~~v~s~~c~Wli~t~p~q~l~irv~~~~~~pt~n~c~s~~L~i~m~~~  236 (454)
T KOG4292|consen  168 TYNITFTTQNSGSIPSPNDPDTYVASSICNWLIDTPPGQRLYIRVVHLHLAPTINECESASLTIFMSYK  236 (454)
T ss_pred             ccceeecCcccccccCCCCcccccccchhhhhhhcCCCcceeEEEEeccCCcccccccceeEEEEeccC
Confidence            45556654 44999999999999999999999999999999999999998766 679999999999753

>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins

Probab=96.13  E-value=0.034  Score=31.87  Aligned_cols=41  Identities=12%  Similarity=0.169  Sum_probs=30.8

Q ss_pred             CCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCC
Q psy16691         30 NYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAAS   76 (94)
Q Consensus        30 ~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~   76 (94)
                      .++.+.+|.|.|.+|.|.-++|.+.. ++..     .|.+.|.|...
T Consensus        37 ~~p~n~~C~y~i~iP~G~~a~v~~~~-~~~~-----~d~i~v~D~~g   77 (120)
T PF02408_consen   37 QFPANQNCTYQINIPKGYYAKVTLSA-NLND-----NDSITVTDSNG   77 (120)
T ss_pred             ccCCCCceEEEEEcCCceEEEEEEEE-ecCC-----CCEEEEEecCC
Confidence            36788899999999999988887643 2222     48888888543

The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.

>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP)

Probab=91.46  E-value=1.2  Score=29.77  Aligned_cols=53  Identities=17%  Similarity=0.178  Sum_probs=39.3

Q ss_pred             eCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCC
Q psy16691         16 TGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAA   75 (94)
Q Consensus        16 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~   75 (94)
                      .+.+|.++.-.    -.+...|--.+.+.+++.|.++|..++++-..   .|+|.++||.
T Consensus        64 ~s~~G~f~f~a----~~pq~~Ca~y~iaePd~~IeI~~~~vdidC~~---G~ll~v~DGW  116 (311)
T PF05428_consen   64 LSEEGQFTFTA----SRPQLVCAAYFIAEPDELIEIEFDHVDIDCEG---GDLLKVFDGW  116 (311)
T ss_pred             eccCceEEEec----CCCCceeEEEEEeCCCeEEEEEEEEeeccCCC---CCEEEEEece
Confidence            44556554211    14577898888888889999999999997432   6999999985

Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	94
2qqk_A	579	Neuropilin-2 A1a2b1b2 Domains In Complex With A Sem		3e-06
2qqo_A	460	Crystal Structure Of The A2b1b2 Domains From Human		4e-06
2qqm_A	450	Crystal Structure Of The A2b1b2 Domains From Human		4e-06
2wno_A	149	X-Ray Structure Of Cub_c Domain From Tsg-6 Length =		5e-06
1szb_A	170	Crystal Structure Of The Human Mbl-Associated Prote		5e-06
4gz9_A	577	Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2		2e-05
1nt0_A	286	Crystal Structure Of The Cub1-Egf-Cub2 Region Of Ma		5e-05
1nzi_A	159	Crystal Structure Of The Cub1-Egf Interaction Domai		9e-04

>pdb|2QQK|A Chain A, Neuropilin-2 A1a2b1b2 Domains In Complex With A Semaphorin-Blocking Fab Length = 579

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 10  NANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLE------PQSE 63
           + + + T   G I SP FP  Y +NLD   TI    +  I+L FL  DLE       + +
Sbjct: 126 DCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGD 185
Query: 64  CLYDYVEMYHAASVTPP--TRLCGNHHISAL 92
           C YD+++++       P   + CG    S L
Sbjct: 186 CKYDWLDIWDGIPHVGPLIGKYCGTKTPSEL 216

>pdb|2QQO|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human Neuropilin-2 Length = 460

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 10 NANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLE------PQSE 63
          + + + T   G I SP FP  Y +NLD   TI    +  I+L FL  DLE       + +
Sbjct: 7  DCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGD 66
Query: 64 CLYDYVEMYHAASVTPP--TRLCGNHHISAL 92
          C YD+++++       P   + CG    S L
Sbjct: 67 CKYDWLDIWDGIPHVGPLIGKYCGTKTPSEL 97

>pdb|2QQM|A Chain A, Crystal Structure Of The A2b1b2 Domains From Human Neuropilin-1 Length = 450

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 16 TGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSE------CLYDYV 69
          T   G I SP FP  Y N+L+    +  P+ + I+L F   DLEP S       C YD +
Sbjct: 16 TTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRL 75
Query: 70 EMYHAASVTPP--TRLCG 85
          E++       P   R CG
Sbjct: 76 EIWDGFPDVGPHIGRYCG 93

>pdb|2WNO|A Chain A, X-Ray Structure Of Cub_c Domain From Tsg-6 Length = 149

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 15 LTGTEGFITSPAFPSNYANN-LDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYH 73
           T  +    SP FP+ Y +N + YW  IR     RI L+FL  DLE    CL DYVE+Y 
Sbjct: 11 FTDPKQIFKSPGFPNEYEDNQICYW-HIRLKYGQRIHLSFLDFDLEDDPGCLADYVEIYD 69
Query: 74 AASVTPP--TRLCGN 86
          +         R CG+
Sbjct: 70 SYDDVHGFVGRYCGD 84

>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19 (Map19) Length = 170

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP 79
          G + SP FP  YAN+ +   T+  P   R+ L F   DLE    C YD+V++   A V  
Sbjct: 13 GRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSSGAKVL- 71
Query: 80 PTRLCGN 86
             LCG 
Sbjct: 72 -ATLCGQ 77

>pdb|4GZ9|A Chain A, Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2b1b2) Length = 577

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 16  TGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSE------CLYDYV 69
           T   G I SP FP  Y N+L+    I  P+ + I+L F   DLE  S       C YD +
Sbjct: 134 TAPTGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQDSNPPGGMFCRYDRL 193
Query: 70  EMYHAASVTPP--TRLCG 85
           E++       P   R CG
Sbjct: 194 EIWDGFPEVGPHIGRYCG 211

>pdb|1NT0|A Chain A, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2 Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP 79
          G + SP FP  Y N+ D   T+  P   R+ L F   +LE    C YD+V++     V  
Sbjct: 9  GRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELSYRCEYDFVKLTSGTKVL- 67
Query: 80 PTRLCGN 86
             LCG 
Sbjct: 68 -ATLCGQ 73

>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of Complement Protease C1s Length = 159

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP 79
          G I SP +P  Y + ++    I  PE   I L F  LD+E    C YD V++   +  T 
Sbjct: 6  GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQI--ISGDTE 63
Query: 80 PTRLCG 85
            RLCG
Sbjct: 64 EGRLCG 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	94
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	3e-21
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	1e-19
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	9e-16
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	2e-14
2wno_A	149	Tumor necrosis factor-inducible gene 6 protein; gl	2e-19
3dem_A	278	Complement factor MAsp-3; complement system, innat	6e-19
3dem_A	278	Complement factor MAsp-3; complement system, innat	5e-14
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	8e-19
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	2e-14
1szb_A	170	Mannose binding lectin-associated serine protease-	3e-17
1nzi_A	159	Complement C1S component; calcium, innate immunity	1e-16
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	1e-16
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	1e-14
3poj_A	115	Mannan-binding lectin serine protease 1; CUB domai	6e-16
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	6e-16
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	1e-15
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	2e-15
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	3e-14
1spp_B	116	Major seminal plasma glycoprotein PSP-II; seminal	1e-12
1sfp_A	114	ASFP; spermadhesin, bovine seminal plasma protein,	2e-12
1spp_A	109	Major seminal plasma glycoprotein PSP-I; seminal p	3e-12

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 85.3 bits (211), Expect = 3e-21
 Identities = 26/79 (32%), Positives = 34/79 (43%)

Query: 15 LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHA 74
          LT + G I SP  P+ Y + ++    I       I L F    LE    C  DY+E+Y  
Sbjct: 5  LTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFHYNCTNDYLEVYDT 64

Query: 75 ASVTPPTRLCGNHHISALT 93
           S T   R CG     +LT
Sbjct: 65 DSETSLGRYCGKSIPPSLT 83

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 80.7 bits (199), Expect = 1e-19
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 14  SLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYH 73
           +LT + G   SP +P  Y ++ + +  ++    +   L F    LE    C  DY+ +Y 
Sbjct: 237 NLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHHPNCTLDYLAVYD 296

Query: 74  AASVTPPT--RLCGNHHISALT 93
             S       +LCG+     + 
Sbjct: 297 GPSSNSHLLTQLCGDEKPPLIR 318

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 69.5 bits (170), Expect = 9e-16
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 12  NTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEM 71
              +  T G + S  +P+ Y+ N     TIR      +   FL  DLE    C  DY+E+
Sbjct: 350 VVIVNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLEHHINCSTDYLEL 409

Query: 72  YHAASVTPPTRLCGNH 87
           Y         R CG  
Sbjct: 410 YDGPRQM--GRYCGVD 423

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 66.1 bits (161), Expect = 2e-14
 Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 16  TGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEP-QSECLYDYVEMYHA 74
           T   G  TSP FP+NY NN +    I       I + F    LE        D++E+   
Sbjct: 122 TDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLEEAIGNYYTDFLEIRDG 181

Query: 75  ASVTPPT--RLCGNHHISALT 93
                P      G++    + 
Sbjct: 182 GYEKSPLLGIFYGSNLPPTII 202

>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens} Length = 149

 Score = 76.3 bits (188), Expect = 2e-19
 Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 15 LTGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYH 73
           T  +    SP FP+ Y +N   YW  IR     RI L+FL  DLE    CL DYVE+Y 
Sbjct: 11 FTDPKQIFKSPGFPNEYEDNQICYW-HIRLKYGQRIHLSFLDFDLEDDPGCLADYVEIYD 69

Query: 74 AASVTPPT--RLCGNHHISALT 93
          +         R CG+     + 
Sbjct: 70 SYDDVHGFVGRYCGDELPDDII 91

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} Length = 278

 Score = 77.3 bits (190), Expect = 6e-19
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 15 LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHA 74
          L    G I SP +P +Y ++ +    I  P+  RI L F+  +LE    C YDYV++   
Sbjct: 5  LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVE-- 62

Query: 75 ASVTPPTRLCGNH 87
                   CG  
Sbjct: 63 TEDQVLATFCGRE 75

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} Length = 278

 Score = 64.2 bits (156), Expect = 5e-14
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 15  LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRL-DLE--PQSECLYDYVEM 71
            T   G ITSP FP+ Y  + +   TI   E   + L F  + D+E  P+  C YDY+++
Sbjct: 171 FTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKI 230

Query: 72  YHAASVTPPTRLCGNH 87
                V      CG  
Sbjct: 231 KVGPKV--LGPFCGEK 244

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens} Length = 361

 Score = 78.1 bits (192), Expect = 8e-19
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 14 SLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYH 73
           L    G I SP +P +Y ++ +    I  P+  RI L F+  +LE    C YDYV++  
Sbjct: 4  ELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVET 63

Query: 74 AASVTPPTRLCGNH 87
             V      CG  
Sbjct: 64 EDQVL--ATFCGRE 75

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens} Length = 361

 Score = 65.8 bits (160), Expect = 2e-14
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 15  LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLR---LDLEPQSECLYDYVEM 71
            T   G ITSP FP+ Y  + +   TI   E   + L F     ++  P+  C YDY+++
Sbjct: 171 FTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKI 230

Query: 72  YHAASVTPPTRLCGNH 87
                       CG  
Sbjct: 231 K--VGPKVLGPFCGEK 244

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 170

 Score = 71.1 bits (174), Expect = 3e-17
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 15 LTGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYH 73
               G + SP FP  YAN+ +  W T+  P   R+ L F   DLE    C YD+V++  
Sbjct: 8  PEPVFGRLASPGFPGEYANDQERRW-TLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSS 66

Query: 74 AASVTPPT--RLCGN 86
           A V      +   +
Sbjct: 67 GAKVLATLCGQESTD 81

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 159

 Score = 69.1 bits (169), Expect = 1e-16
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 19 EGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASV 77
           G I SP +P  Y + ++  W  I  PE   I L F  LD+E    C YD V++    + 
Sbjct: 5  YGEILSPNYPQAYPSEVEKSW-DIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTE 63

Query: 78 TPPT--RLCGN 86
                +   N
Sbjct: 64 EGRLCGQRSSN 74

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 Length = 286

 Score = 71.1 bits (174), Expect = 1e-16
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 17 GTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAAS 76
             G + SP FP  Y N+ D   T+  P   R+ L F   +LE    C YD+V++     
Sbjct: 6  PVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELSYRCEYDFVKLTSGTK 65

Query: 77 VTPPTRLCGNH 87
          V     LCG  
Sbjct: 66 VL--ATLCGQE 74

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 Length = 286

 Score = 66.1 bits (161), Expect = 1e-14
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 1   MMKNEKNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLR---LD 57
             K+  + + +    TG  GF++SP +P  Y         IR  E   I L F+    ++
Sbjct: 156 QNKHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVE 215

Query: 58  LEPQSECLYDYVEMYHAASVTPPTRLCGNHHISALT 93
           + P+++C YD +++            CG      + 
Sbjct: 216 MHPEAQCPYDSLKIQ--TDKREYGPFCGKTLPPRIE 249

>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A Length = 115

 Score = 66.2 bits (162), Expect = 6e-16
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 15 LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFL-RLDLEPQSE--CLYDYVEM 71
           T   G ITSP +P+ Y  + +   TI   E   + L F    D+E   E  C YDY+++
Sbjct: 9  FTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPCPYDYIKI 68

Query: 72 YHAASVTPPTRLCGNHHISALT 93
             A        CG      ++
Sbjct: 69 K--AGSKVWGPFCGEKSPEPIS 88

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Length = 579

 Score = 70.4 bits (172), Expect = 6e-16
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 15 LTGTEGFITSPAFPSNYANNLDYWVTIRGPEET-RIVLAFLRLDLEPQSECLYDYVEMYH 73
           +   G+ITSP +P +Y ++ +    +  PE   +IVL F       + +C YD++E+  
Sbjct: 11 NSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEKHDCKYDFIEIRD 70

Query: 74 AASVTPPT--RLCGNHHISALT 93
            S +     + CGN     + 
Sbjct: 71 GDSESADLLGKHCGNIAPPTII 92

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Length = 579

 Score = 69.2 bits (169), Expect = 1e-15
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 15  LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEP------QSECLYDY 68
            T   G I SP FP  Y +NLD   TI    +  I+L FL  DLE       + +C YD+
Sbjct: 131 FTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDW 190

Query: 69  VEMYHAASVTPP--TRLCGNH 87
           ++++       P   + CG  
Sbjct: 191 LDIWDGIPHVGPLIGKYCGTK 211

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 Length = 450

 Score = 68.5 bits (167), Expect = 2e-15
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 15 LTGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSE------CLYD 67
           T   G I SP FP  Y N+L+  +  +  P+ + I+L F   DLEP S       C YD
Sbjct: 15 YTTPSGVIKSPGFPEKYPNSLECTY-IVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYD 73

Query: 68 YVEMYHAASVTPP--TRLCGN 86
           +E++       P   R CG 
Sbjct: 74 RLEIWDGFPDVGPHIGRYCGQ 94

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens} Length = 460

 Score = 65.1 bits (158), Expect = 3e-14
 Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 10/82 (12%)

Query: 15 LTGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEP------QSECLYD 67
           T   G I SP FP  Y +NLD  + TI    +  I+L FL  DLE       + +C YD
Sbjct: 12 FTSPNGTIESPGFPEKYPHNLDCTF-TILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYD 70

Query: 68 YVEMYHAASVTPPT--RLCGNH 87
          +++++       P   + CG  
Sbjct: 71 WLDIWDGIPHVGPLIGKYCGTK 92

>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Length = 116

 Score = 57.8 bits (140), Expect = 1e-12
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 6  KNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECL 65
            P      +  T G I++     N       W TI    + ++ +A   L+L     C 
Sbjct: 4  NGPDECGRVIKDTSGSISNTDRQKNLC----TW-TILMKPDQKVRMAIPYLNL----ACG 54

Query: 66 YDYVEMYHAASVTPPT-RLCGNHHIS 90
           +YVE++      P   +LC    I 
Sbjct: 55 KEYVEVFDGLLSGPSYGKLCAGAAIV 80

>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1 Length = 114

 Score = 57.3 bits (139), Expect = 2e-12
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 15 LTGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYH 73
          L    G I +      Y    +  W TI+ P E  + ++   L L     C  + +E+  
Sbjct: 14 LKEESGVIATY-----YGPKTNCVW-TIQMPPEYHVRVSIQYLQL----NCNKESLEIID 63

Query: 74 AASVTPPT-RLCGN 86
              +P   ++C  
Sbjct: 64 GLPGSPVLGKICEG 77

>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Length = 109

 Score = 56.6 bits (137), Expect = 3e-12
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 15 LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHA 74
          LT   G I +             W T++   + +++++   L+L     C  +YVE+   
Sbjct: 10 LTDDYGTIFTY----KGPKTECVW-TLQVDPKYKLLVSIPTLNL----TCGKEYVEVLEG 60

Query: 75 ASVTPPT-RLCGNHHI 89
          A  +    + C    I
Sbjct: 61 APGSKSLGKFCEGLSI 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	94
2wno_A	149	Tumor necrosis factor-inducible gene 6 protein; gl	99.95
3poj_A	115	Mannan-binding lectin serine protease 1; CUB domai	99.93
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	99.9
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.9
1szb_A	170	Mannose binding lectin-associated serine protease-	99.9
1nzi_A	159	Complement C1S component; calcium, innate immunity	99.89
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	99.88
1spp_A	109	Major seminal plasma glycoprotein PSP-I; seminal p	99.88
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	99.87
1spp_B	116	Major seminal plasma glycoprotein PSP-II; seminal	99.87
1sfp_A	114	ASFP; spermadhesin, bovine seminal plasma protein,	99.87
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	99.87
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	99.87
3dem_A	278	Complement factor MAsp-3; complement system, innat	99.87
3dem_A	278	Complement factor MAsp-3; complement system, innat	99.86
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	99.86
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.86
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	99.86
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	99.86
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.84
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	99.8

>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}

Probab=99.95  E-value=5.2e-27  Score=138.78  Aligned_cols=87  Identities=31%  Similarity=0.521  Sum_probs=79.2

Q ss_pred             CCCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCC--CCeecC
Q psy16691          7 NPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVT--PPTRLC   84 (94)
Q Consensus         7 ~~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~--~~~~~c   84 (94)
                      ....|++.++...|.|.||+||..|+++..|.|.|+++.+++|+|.|.+|+||....|.+|+|+||||....  .+++||
T Consensus         3 ~~~~Cgg~l~~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~L~F~~f~le~~~~C~~D~l~I~dg~~~~~~~~~~~C   82 (149)
T 2wno_A            3 HAKECGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDDPGCLADYVEIYDSYDDVHGFVGRYC   82 (149)
T ss_dssp             CCSCCCEEECSSEEEEECTTTTSCCCTTCEEEEEEECCTTCEEEEEEEEEECCCCTTCCSSEEEEESSSSSSSSEEEEEC
T ss_pred             CCCCCCCEEECCceEEECCCCCcCCCCCCEEEEEEEECCCCEEEEEEEEEEecCCCCCCCCEEEEecCCCCCcceeeeEc
Confidence            467899999999999999999999999999999999999999999999999998889999999999997654  368999


Q ss_pred             CCCcCCCCc
Q psy16691         85 GNHHISALT   93 (94)
Q Consensus        85 G~~~p~~~~   93 (94)
                      |...|..++
T Consensus        83 G~~~p~~~~   91 (149)
T 2wno_A           83 GDELPDDII   91 (149)
T ss_dssp             SSSCCCCEE
T ss_pred             CCCCCCCEE
Confidence            998887653

>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A

Probab=99.93  E-value=6.3e-26  Score=128.74  Aligned_cols=83  Identities=28%  Similarity=0.484  Sum_probs=72.9

Q ss_pred             CCCCcEE-eCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEe-EeeeCCC--CCCCCcEEEEEeCCCCCCCeecC
Q psy16691          9 VNANTSL-TGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFL-RLDLEPQ--SECLYDYVEMYHAASVTPPTRLC   84 (94)
Q Consensus         9 ~~C~~~~-~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~-~f~l~~~--~~C~~d~l~i~~g~~~~~~~~~c   84 (94)
                      ..|++.+ +...|.|.||+||..|+++.+|.|.|.++++++|+|.|. .|+||..  ..|.+|+|+|+||..  .+++||
T Consensus         2 ~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~i~l~f~d~f~le~~~~~~C~~D~l~i~dg~~--~~~~~C   79 (115)
T 3poj_A            2 VECSGNLFTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPCPYDYIKIKAGSK--VWGPFC   79 (115)
T ss_dssp             -CEEEEEECSSEEEEECTTTTSCCCTTCEEEEEEECCTTCCCEEEECSCCBBCCCSSSSSCSCEEEEEETTE--EEEEEC
T ss_pred             eECCCceEcCCCEEEcCCCCCcCCcCCCeEEEEEEcCCCCEEEEEEecceecccCCCCCCCCeEEEEEcCCc--ccccCc
Confidence            4698885 788999999999999999999999999999999999999 5999965  489999999999843  478999


Q ss_pred             CCCcCCCCc
Q psy16691         85 GNHHISALT   93 (94)
Q Consensus        85 G~~~p~~~~   93 (94)
                      |...|..++
T Consensus        80 G~~~p~~~~   88 (115)
T 3poj_A           80 GEKSPEPIS   88 (115)
T ss_dssp             BSSCCCCEE
T ss_pred             CCCCCCCEE
Confidence            998887653

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1

Probab=99.90  E-value=1.3e-23  Score=141.90  Aligned_cols=85  Identities=31%  Similarity=0.567  Sum_probs=76.1

Q ss_pred             CCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCC------CCCCcEEEEEeCCCCC--C
Q psy16691          8 PVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQS------ECLYDYVEMYHAASVT--P   79 (94)
Q Consensus         8 ~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~------~C~~d~l~i~~g~~~~--~   79 (94)
                      ...|++.++...|.|.||+||..||++..|.|.|.++.+++|.|.|.+|+||...      .|.+|||+||||....  .
T Consensus         8 ~~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~~~~~~~C~~D~l~i~dg~~~~~~~   87 (450)
T 2qqm_A            8 GPECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPH   87 (450)
T ss_dssp             -CTTCEEECSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC----CCCSSCSSEEEEESSSTTTSCE
T ss_pred             CCCCCCeEeCCcEEEeCCCCCcCCCCCCeEEEEEEeCCCCEEEEEEEEEEeEeccCCCCCCCCCCcEEEEecCCCCCCcc
Confidence            4579999999999999999999999999999999999999999999999999764      7999999999997653  3


Q ss_pred             CeecCCCCcCCCC
Q psy16691         80 PTRLCGNHHISAL   92 (94)
Q Consensus        80 ~~~~cG~~~p~~~   92 (94)
                      +++|||...|+.+
T Consensus        88 ~~~~CG~~~p~~i  100 (450)
T 2qqm_A           88 IGRYCGQKTPGRI  100 (450)
T ss_dssp             EEEECTTCCCCEE
T ss_pred             ceeecCCcCCCcE
Confidence            6899999888765

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}

Probab=99.90  E-value=2.6e-23  Score=140.83  Aligned_cols=86  Identities=31%  Similarity=0.612  Sum_probs=74.6

Q ss_pred             CCCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCC------CCCCCcEEEEEeCCCCC--
Q psy16691          7 NPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQ------SECLYDYVEMYHAASVT--   78 (94)
Q Consensus         7 ~~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~------~~C~~d~l~i~~g~~~~--   78 (94)
                      ....|++.++...|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||..      ..|.+|||+||||....  
T Consensus         4 ~~~~Cg~~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~~~~~~~~~C~~D~l~i~dg~~~~~~   83 (460)
T 2qqo_A            4 GSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGP   83 (460)
T ss_dssp             ---CCCEEECSSEEEEECTTTTSCCCSSCEEEEEEECCTTCEEEEEEEEEECCCC--------CCSSEEEEESSSTTTSC
T ss_pred             CCCCCCCEEeCCceEEeCCCCCCCCCCCCEEEEEEEcCCCCEEEEEEEEEEcccccccccCCCCCCCEEEEEcCCCCCCc
Confidence            3567999999999999999999999999999999999999999999999999975      47999999999997643  


Q ss_pred             CCeecCCCCcCCCC
Q psy16691         79 PPTRLCGNHHISAL   92 (94)
Q Consensus        79 ~~~~~cG~~~p~~~   92 (94)
                      .+++|||...|..+
T Consensus        84 ~~~~~CG~~~p~~i   97 (460)
T 2qqo_A           84 LIGKYCGTKTPSEL   97 (460)
T ss_dssp             EEEEECTTCCCCCE
T ss_pred             ccceEeCCcCCcCE
Confidence            36899999888765

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=99.90  E-value=2.1e-23  Score=125.34  Aligned_cols=75  Identities=32%  Similarity=0.530  Sum_probs=68.4

Q ss_pred             CcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCCCeecCCCCc
Q psy16691         12 NTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNHH   88 (94)
Q Consensus        12 ~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~~~~~cG~~~   88 (94)
                      +..+++..|.|.||+||..|+++.+|.|.|+++++++|+|.|.+|+||....|.+|||+||||..  .+++|||...
T Consensus         5 ~~~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~C~~D~l~i~dg~~--~~~~~CG~~~   79 (170)
T 1szb_A            5 PKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSSGAK--VLATLCGQES   79 (170)
T ss_dssp             CCCCCCCEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCCTTSCSSEEEEESSSS--EEEEECSBTT
T ss_pred             cceEcCCCeEEECCCCCcCCcCCCcEEEEEEcCCCCEEEEEEEEEEccCCCCCCCCEEEEEeCCc--cccccCCCCC
Confidence            35568889999999999999999999999999999999999999999998899999999999853  4789999873

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=99.89  E-value=1.9e-23  Score=124.20  Aligned_cols=72  Identities=32%  Similarity=0.536  Sum_probs=64.8

Q ss_pred             eCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCCCeecCCCCcC
Q psy16691         16 TGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNHHI   89 (94)
Q Consensus        16 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~~~~~cG~~~p   89 (94)
                      ++..|.|.||+||..|+++..|.|.|.++.+++|+|.|.+|+||....|.+|+|+||||..  .+++|||...|
T Consensus         2 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~C~~D~l~i~dg~~--~~~~~CG~~~~   73 (159)
T 1nzi_A            2 PTMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDT--EEGRLCGQRSS   73 (159)
T ss_dssp             CCSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCGGGCSSEEEEEC-----CCEEECSEECC
T ss_pred             CCCCEEEECCCCccCCCCCCCEEEEEEeCCCCEEEEEEeEEEecCCCCCCCCEEEEEeCCc--hhcccCCCCCC
Confidence            5678999999999999999999999999999999999999999988899999999999863  47899998875

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}

Probab=99.88  E-value=4.5e-23  Score=139.37  Aligned_cols=83  Identities=31%  Similarity=0.458  Sum_probs=76.9

Q ss_pred             CCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCCCeecCCCCcCC
Q psy16691         11 ANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNHHIS   90 (94)
Q Consensus        11 C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~~~~~cG~~~p~   90 (94)
                      |++.+++..|.|.||+||+.|+++..|.|.|.++++++|+|.|.+|+|+...+|.+|||+|+|+.....+++|||...|+
T Consensus         1 CGg~l~~~~G~i~SP~yP~~Y~~~~~C~w~I~~~~g~~i~L~f~~f~le~~~~C~~D~l~i~d~~~~~~l~~~CG~~~p~   80 (457)
T 3kq4_B            1 CGEILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFHYNCTNDYLEVYDTDSETSLGRYCGKSIPP   80 (457)
T ss_dssp             CCCEECSSEEECCCSSTTSCCCSSCCCEEEEECCSSEEEEECCSCCCCCCCSSCCSSEEEEECTTSSSEEEEECSSCCCS
T ss_pred             CCCeEecCCEEEeCCCCCCCCCCCCcEEEEEEcCCCCEEEEEEEeeecccCCCCCccEEEEEcCCCCcccceeCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999889999999999985555578999999887


Q ss_pred             CCc
Q psy16691         91 ALT   93 (94)
Q Consensus        91 ~~~   93 (94)
                      .++
T Consensus        81 ~~~   83 (457)
T 3kq4_B           81 SLT   83 (457)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            653

>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=99.88  E-value=1.6e-22  Score=113.88  Aligned_cols=74  Identities=18%  Similarity=0.219  Sum_probs=65.2

Q ss_pred             CCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCC-CeecCCC
Q psy16691          8 PVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP-PTRLCGN   86 (94)
Q Consensus         8 ~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~-~~~~cG~   86 (94)
                      +..|++.++...|.|.||     |+++.+|.|.|.++++++|.|.|.+|++    +|.+|||+||||..... +++|||.
T Consensus         3 ~~~Cgg~l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l----~C~~D~l~I~dg~~~~~~~~~~CG~   73 (109)
T 1spp_A            3 YHACGGRLTDDYGTIFTY-----KGPKTECVWTLQVDPKYKLLVSIPTLNL----TCGKEYVEVLEGAPGSKSLGKFCEG   73 (109)
T ss_dssp             ECSSCEEEECSEEEEECC-----CSSCSEEEEEEECCTTSEEEEEEEEEEC----CTTTEEEEEESSSTTSCEEEEESEE
T ss_pred             ccCCCCEEeCCcEEEeCC-----CCCCCcEEEEEEcCCCCEEEEEEeeeec----cCCCCEEEEEeCCCCCchhhhhhCC
Confidence            467999999999999998     7789999999999999999999999998    58899999999976433 6899998


Q ss_pred             CcCCC
Q psy16691         87 HHISA   91 (94)
Q Consensus        87 ~~p~~   91 (94)
                      . |..
T Consensus        74 ~-p~~   77 (109)
T 1spp_A           74 L-SIL   77 (109)
T ss_dssp             E-EEE
T ss_pred             C-CCC
Confidence            6 543

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=99.87  E-value=2.5e-22  Score=129.03  Aligned_cols=82  Identities=26%  Similarity=0.478  Sum_probs=69.8

Q ss_pred             CCCcE-EeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEe-EeeeCCC--CCCCCcEEEEEeCCCCCCCeecCC
Q psy16691         10 NANTS-LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFL-RLDLEPQ--SECLYDYVEMYHAASVTPPTRLCG   85 (94)
Q Consensus        10 ~C~~~-~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~-~f~l~~~--~~C~~d~l~i~~g~~~~~~~~~cG   85 (94)
                      .|++. ++...|.|.||+||..|+++..|.|.|+++.+++|.|.|. .|+||..  ..|.+|+|+|+||.  ..+++|||
T Consensus       164 ~Cg~~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~~f~le~~~~~~C~~D~l~i~dg~--~~~~~~CG  241 (286)
T 1nt0_A          164 LCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSLKIQTDK--REYGPFCG  241 (286)
T ss_dssp             CCEEEEECSSSEEEECTTTTSCCCSSCEEEEEEECCSSCEEEEEECSCCBBCCC----C--CEEEEECSS--CEEEEECB
T ss_pred             cccCceecCCceEEeCCCCCCCCCCCCEEEEEEECCCceEEEEEEeceEEeccCCCCCCCCcEEEEEeCC--cceEEEcC
Confidence            58877 7888999999999999999999999999999999999997 7999865  68999999999984  34789999


Q ss_pred             CCcCCCCc
Q psy16691         86 NHHISALT   93 (94)
Q Consensus        86 ~~~p~~~~   93 (94)
                      ...|..++
T Consensus       242 ~~~p~~~~  249 (286)
T 1nt0_A          242 KTLPPRIE  249 (286)
T ss_dssp             SSCCCCEE
T ss_pred             CCCCCCEE
Confidence            99887653

>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=99.87  E-value=1.5e-22  Score=115.15  Aligned_cols=77  Identities=21%  Similarity=0.311  Sum_probs=66.9

Q ss_pred             CCCCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCC-CeecC
Q psy16691          6 KNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP-PTRLC   84 (94)
Q Consensus         6 ~~~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~-~~~~c   84 (94)
                      .....|++.++...|.|.||     |+++.+|.|.|.++++++|.|.|.+|+|    +|.+|+|+||||..... +++||
T Consensus         4 ~~~~~Cgg~l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l----~C~~D~l~i~dg~~~~~~~~~~C   74 (116)
T 1spp_B            4 NGPDECGRVIKDTSGSISNT-----DRQKNLCTWTILMKPDQKVRMAIPYLNL----ACGKEYVEVFDGLLSGPSYGKLC   74 (116)
T ss_dssp             EGGGGTTEEECCSEEEEECC-----SSCCSEEEEEEECCTTCEEEEEEEEEEC----CBTTEEEEEESSSTTSCEEEEES
T ss_pred             CCCCCCCCEEeCCceEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeCcc----cCCCCEEEEEcCCCCCccccccc
Confidence            34568999999999999998     7789999999999999999999999999    58899999999976533 68999


Q ss_pred             CCCcCCCC
Q psy16691         85 GNHHISAL   92 (94)
Q Consensus        85 G~~~p~~~   92 (94)
                      |.. |..+
T Consensus        75 G~~-p~~~   81 (116)
T 1spp_B           75 AGA-AIVF   81 (116)
T ss_dssp             EEE-EEEE
T ss_pred             CcC-CCCE
Confidence            987 5443

>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1

Probab=99.87  E-value=3.2e-22  Score=113.38  Aligned_cols=78  Identities=19%  Similarity=0.302  Sum_probs=67.0

Q ss_pred             CCCCCCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCC-Cee
Q psy16691          4 NEKNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP-PTR   82 (94)
Q Consensus         4 ~~~~~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~-~~~   82 (94)
                      .......|++.++...|.|.||     |+++.+|.|.|.++++++|+|.|.+|+|    .|.+|||+||||..... +++
T Consensus         3 w~~~~~~Cgg~l~~~~G~i~Sp-----y~~~~~C~w~I~~~~g~~I~l~f~~f~l----~C~~D~l~i~dg~~~~~~~~~   73 (114)
T 1sfp_A            3 WLPRNTNCGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQL----NCNKESLEIIDGLPGSPVLGK   73 (114)
T ss_dssp             -CCEECSSCEEECCSEEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEEC----CTTTEEEEEESSSTTSCEEEE
T ss_pred             ccccCCCCCCeEECCcEEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeeee----ecCCCEEEEEcCCCCCcceeE
Confidence            3445678999999999999997     7789999999999999999999999998    58899999999976433 689


Q ss_pred             cCCCCcCCC
Q psy16691         83 LCGNHHISA   91 (94)
Q Consensus        83 ~cG~~~p~~   91 (94)
                      |||.. |..
T Consensus        74 ~CG~~-p~~   81 (114)
T 1sfp_A           74 ICEGS-LMD   81 (114)
T ss_dssp             ESEEE-EEE
T ss_pred             ecCcC-CCC
Confidence            99987 544

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}

Probab=99.87  E-value=4.9e-22  Score=134.30  Aligned_cols=86  Identities=23%  Similarity=0.499  Sum_probs=78.8

Q ss_pred             CCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCC--CeecCC
Q psy16691          8 PVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP--PTRLCG   85 (94)
Q Consensus         8 ~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~--~~~~cG   85 (94)
                      ...|++.++...|.|.||+||..|+++..|.|.|.++++++|.|.|.+|+|+....|.+|+|+||||.....  +++|||
T Consensus       231 ~~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~~~~i~l~f~~f~le~~~~C~~D~l~i~dg~~~~~~~l~~~CG  310 (457)
T 3kq4_B          231 STGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHHPNCTLDYLAVYDGPSSNSHLLTQLCG  310 (457)
T ss_dssp             CCCCEECCCSSEEEEECTTTTSCCCSSCEEEEEECCSTTCCEEEEEEECCCCCCTTCCSSEEEEEESSSTTSEEEEEECS
T ss_pred             cCCCCCeEccCcceeccCCCCCCCCCCCEEEEEEEeCCCCEEEEEEEeeeecCCCCcCCCEEEEEeCCCCCchhhhhhcC
Confidence            467999999999999999999999999999999999999999999999999998999999999999976544  689999


Q ss_pred             CCcCCCCc
Q psy16691         86 NHHISALT   93 (94)
Q Consensus        86 ~~~p~~~~   93 (94)
                      ...|+.++
T Consensus       311 ~~~p~~i~  318 (457)
T 3kq4_B          311 DEKPPLIR  318 (457)
T ss_dssp             SCCCCCEE
T ss_pred             CcCCCCEE
Confidence            99887653

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=99.87  E-value=5.9e-22  Score=137.27  Aligned_cols=86  Identities=30%  Similarity=0.540  Sum_probs=76.9

Q ss_pred             CCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCC------CCCCcEEEEEeCCCCCC--
Q psy16691          8 PVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQS------ECLYDYVEMYHAASVTP--   79 (94)
Q Consensus         8 ~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~------~C~~d~l~i~~g~~~~~--   79 (94)
                      ...|++.++...|.|.||+||..|+++..|.|.|.++++++|.|.|.+|+||...      .|.+|||+||||.....  
T Consensus       126 ~~~C~~~~~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~g~~I~L~F~~F~lE~~~~~~~~~~C~~D~l~I~dG~~~~~~~  205 (577)
T 4gz9_A          126 GPECSQNYTAPTGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQDSNPPGGMFCRYDRLEIWDGFPEVGPH  205 (577)
T ss_dssp             CCEEEEEECSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCCCSCSTTCCCCSSEEEEESSSTTTSCE
T ss_pred             CcccceeecCCCccccCCCCCCCCCCCceEEEEEEECCCCEEEEEEEEEEeeecCCCCCCCccCccEEEEEcCCCCCCce
Confidence            3469999999999999999999999999999999999999999999999998654      39999999999976543  


Q ss_pred             CeecCCCCcCCCCc
Q psy16691         80 PTRLCGNHHISALT   93 (94)
Q Consensus        80 ~~~~cG~~~p~~~~   93 (94)
                      +++|||...|..++
T Consensus       206 lg~~CG~~~P~~i~  219 (577)
T 4gz9_A          206 IGRYCGQKTPGRIR  219 (577)
T ss_dssp             EEEECSSSCCCCEE
T ss_pred             eEEEeCCCCCCCcc
Confidence            68999999988763

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=99.87  E-value=5.8e-22  Score=126.65  Aligned_cols=83  Identities=28%  Similarity=0.510  Sum_probs=72.5

Q ss_pred             CCCCcE-EeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeE-eeeCCC--CCCCCcEEEEEeCCCCCCCeecC
Q psy16691          9 VNANTS-LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLR-LDLEPQ--SECLYDYVEMYHAASVTPPTRLC   84 (94)
Q Consensus         9 ~~C~~~-~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~-f~l~~~--~~C~~d~l~i~~g~~~~~~~~~c   84 (94)
                      ..|++. ++...|.|.||+||..|+++..|.|.|+++.+++|.|.|.+ |+||..  ..|.+|+|+|+||..  .+++||
T Consensus       164 ~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~f~le~~~~~~C~~D~l~i~dg~~--~~~~~C  241 (278)
T 3dem_A          164 VECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGPK--VLGPFC  241 (278)
T ss_dssp             CCCCCCCBCSSEEEEESTTTTSCCCSSCEEEEEEECCTTCCEEEEECSCCBBCCCSSSSSSSCEEEEEETTE--EEEEEC
T ss_pred             ccCCCceecCCccceeCCCCCCCCCCcCeEEEEEEeCCCcEEEEEEccccccccCCCCCCCCCEEEEecCCc--cccccc
Confidence            357764 57889999999999999999999999999999999999998 999864  579999999999853  378999


Q ss_pred             CCCcCCCCc
Q psy16691         85 GNHHISALT   93 (94)
Q Consensus        85 G~~~p~~~~   93 (94)
                      |...|..++
T Consensus       242 G~~~p~~~~  250 (278)
T 3dem_A          242 GEKAPEPIS  250 (278)
T ss_dssp             BSSCCCCEE
T ss_pred             CCCCCCCEE
Confidence            999887653

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=99.86  E-value=7.5e-22  Score=126.15  Aligned_cols=76  Identities=29%  Similarity=0.534  Sum_probs=66.3

Q ss_pred             CcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCCCeecCCCCcC
Q psy16691         12 NTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNHHI   89 (94)
Q Consensus        12 ~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~~~~~cG~~~p   89 (94)
                      +..++...|.|.||+||..|+++..|.|.|.++++++|+|.|.+|+||....|.+|+|+||||..  .+++|||...|
T Consensus         2 g~~lt~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~~~C~~D~l~v~dg~~--~~~~~CG~~~~   77 (278)
T 3dem_A            2 TVELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVETEDQ--VLATFCGRETT   77 (278)
T ss_dssp             -----CCEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCGGGCSSEEEEECSSC--EEEEECSBSSS
T ss_pred             cceeccCCceEeCCCCCCCCcCCCcEEEEEEECCCCEEEEEEEEEEeCCCCCCCCcEEEEecCCc--ccceEcCCcCC
Confidence            35678899999999999999999999999999999999999999999998899999999999854  37899998764

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=128.99  Aligned_cols=75  Identities=31%  Similarity=0.564  Sum_probs=68.2

Q ss_pred             EEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCCCeecCCCCcCC
Q psy16691         14 SLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNHHIS   90 (94)
Q Consensus        14 ~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~~~~~cG~~~p~   90 (94)
                      .|++..|.|+||+||+.|+++.+|.|.|.+++|++|+|+|.+|+||....|.+|||+|++|...  ++++||...+.
T Consensus         4 ~lt~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~l~F~~f~lE~~~~C~~D~l~i~dg~~~--~~~~cG~~~~~   78 (361)
T 4aqb_A            4 ELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVETEDQV--LATFCGRETTD   78 (361)
T ss_dssp             EEESSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCGGGCSSEEEEECSSCE--EEEECSBSSSS
T ss_pred             EEeCCeEEEeCCCCCCCCCCCCeEEEEEEECCCCEEEEEEeEEEecCCCCCCceEEEEccCCcc--cceeeccccCC
Confidence            5788999999999999999999999999999999999999999999999999999999998543  67888876654

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=99.86  E-value=2.1e-21  Score=134.38  Aligned_cols=86  Identities=31%  Similarity=0.612  Sum_probs=71.5

Q ss_pred             CCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCC------CCCCCcEEEEEeCCCCCC--
Q psy16691          8 PVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQ------SECLYDYVEMYHAASVTP--   79 (94)
Q Consensus         8 ~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~------~~C~~d~l~i~~g~~~~~--   79 (94)
                      +..|++.++...|.|.||+||..|+++..|.|.|.++.+++|.|.|.+|+||..      ..|.+|||+||||.....  
T Consensus       124 ~~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~F~~f~le~~~~~~~~~~C~~D~l~I~dg~~~~~~~  203 (579)
T 2qqk_A          124 SEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPL  203 (579)
T ss_dssp             CCCCCCEECCSEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEEC-------------CCEEEEESSSTTTSCE
T ss_pred             cccccceeccCCceecCCCCcccCCCCCeEEEEEEcCCCCEEEEEEEEEEeecccccccCCCCCCEEEEEEeCCCCCCce
Confidence            346999999999999999999999999999999999999999999999999864      579999999999976532  


Q ss_pred             CeecCCCCcCCCCc
Q psy16691         80 PTRLCGNHHISALT   93 (94)
Q Consensus        80 ~~~~cG~~~p~~~~   93 (94)
                      +++|||...|..++
T Consensus       204 ~~~~CG~~~p~~i~  217 (579)
T 2qqk_A          204 IGKYCGTKTPSELR  217 (579)
T ss_dssp             EEEECSSSCCCCEE
T ss_pred             eEEeCCCCCCCcEE
Confidence            68999999887653

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=99.86  E-value=1.4e-21  Score=135.34  Aligned_cols=85  Identities=28%  Similarity=0.531  Sum_probs=73.2

Q ss_pred             CCCCCcEEeCC-eeeEECCCCCcCCCCCCceEEEEEcCCC-CeEEEEEe-EeeeCCCCCCCCcEEEEEeCCCCCC--Cee
Q psy16691          8 PVNANTSLTGT-EGFITSPAFPSNYANNLDYWVTIRGPEE-TRIVLAFL-RLDLEPQSECLYDYVEMYHAASVTP--PTR   82 (94)
Q Consensus         8 ~~~C~~~~~~~-~g~i~SP~~p~~y~~~~~C~w~i~~~~~-~~i~l~f~-~f~l~~~~~C~~d~l~i~~g~~~~~--~~~   82 (94)
                      ...||+.++.. .|.|.||+||..|+++..|.|.|++|.+ ++|.|.|. +|+||. .+|.+|||+|+||.....  +++
T Consensus         6 ~~~CGg~l~~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~~~~~I~L~F~~~f~le~-~~C~~Dyl~I~dG~~~~~~~lg~   84 (577)
T 4gz9_A            6 SDKCGGTIKIENPGYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLED-RDCKYDYVEVIDGENEGGRLWGK   84 (577)
T ss_dssp             -CCSSEEEECSSCEEEECTTTTTCCCSSCEEEEEEECSSTTCCEEEEECSCCBCCC-GGGTSSEEEEEESSSTTSEEEEE
T ss_pred             cCCCCCEEEcCCCEEEeCCCCCCCCCCCCeEEEEEEECCCCcEEEEEEEeeeeecC-CCCCccEEEEEeCCCCCCcEEEE
Confidence            45799999865 5999999999999999999999999866 68999997 799985 469999999999976654  689


Q ss_pred             cCCCCcCCCCc
Q psy16691         83 LCGNHHISALT   93 (94)
Q Consensus        83 ~cG~~~p~~~~   93 (94)
                      |||...|.+++
T Consensus        85 ~CG~~~p~~i~   95 (577)
T 4gz9_A           85 FCGKIAPSPVV   95 (577)
T ss_dssp             ECSSSCCCCEE
T ss_pred             ecCCCCCCCEE
Confidence            99999988764

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=99.86  E-value=1.5e-21  Score=125.44  Aligned_cols=72  Identities=31%  Similarity=0.526  Sum_probs=65.6

Q ss_pred             EEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCCCeecCCCC
Q psy16691         14 SLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNH   87 (94)
Q Consensus        14 ~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~~~~~cG~~   87 (94)
                      .++...|.|.||+||..|+++..|.|.|.++++++|+|.|.+|+||....|.+|||+||||..  .+++|||..
T Consensus         3 ~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~L~F~~f~le~~~~C~~D~l~I~dg~~--~~~~~CG~~   74 (286)
T 1nt0_A            3 WPEPVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELSYRCEYDFVKLTSGTK--VLATLCGQE   74 (286)
T ss_dssp             --CCCEEEEECTTTTSCCCSSCCEEEEEECCTTEEEEEEEEEEECCCCGGGCSSEEEEEETTE--EEEEECSSS
T ss_pred             cccCCCceEeCCCCCccCcCCCcEEEEEEcCCCCEEEEEEEEEEecCCCCCCCcEEEEECCCe--EeceECCCc
Confidence            467888999999999999999999999999999999999999999988899999999999853  478999986

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=99.84  E-value=2e-20  Score=129.54  Aligned_cols=85  Identities=27%  Similarity=0.576  Sum_probs=73.4

Q ss_pred             CCCCCcEEeC-CeeeEECCCCCcCCCCCCceEEEEEcCC-CCeEEEEEe-EeeeCCCCCCCCcEEEEEeCCCCCC--Cee
Q psy16691          8 PVNANTSLTG-TEGFITSPAFPSNYANNLDYWVTIRGPE-ETRIVLAFL-RLDLEPQSECLYDYVEMYHAASVTP--PTR   82 (94)
Q Consensus         8 ~~~C~~~~~~-~~g~i~SP~~p~~y~~~~~C~w~i~~~~-~~~i~l~f~-~f~l~~~~~C~~d~l~i~~g~~~~~--~~~   82 (94)
                      ...|++.++. ..|.|.||+||..|+++..|.|.|.++. +++|.|.|. +|+||. ..|.+|||+|+||.....  +++
T Consensus         3 ~~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~~~~~I~l~F~~~f~le~-~~C~~D~l~i~dg~~~~~~~l~~   81 (579)
T 2qqk_A            3 DPPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEK-HDCKYDFIEIRDGDSESADLLGK   81 (579)
T ss_dssp             --CCCEEEETTSCEEEECTTTTSCCCSSCCEEEEEECSSTTSEEEEEECSCCBCCC-TTSSSSEEEEEESSSTTSEEEEE
T ss_pred             CCCCCCEEEeCCCeEEeCCCCCCCCcCCCEEEEEEEECCCCcEEEEEEeccccccc-CCCCeeEEEEEeCCCCCcceeee
Confidence            3579999986 6799999999999999999999999996 579999999 899986 579999999999976543  689


Q ss_pred             cCCCCcCCCCc
Q psy16691         83 LCGNHHISALT   93 (94)
Q Consensus        83 ~cG~~~p~~~~   93 (94)
                      |||...|+.++
T Consensus        82 ~CG~~~p~~i~   92 (579)
T 2qqk_A           82 HCGNIAPPTII   92 (579)
T ss_dssp             ECTTSCCCCEE
T ss_pred             ECCCCCCCCEE
Confidence            99999887653

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=99.80  E-value=2.7e-19  Score=117.84  Aligned_cols=83  Identities=27%  Similarity=0.476  Sum_probs=72.0

Q ss_pred             CCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeE-eeeCCC--CCCCCcEEEEEeCCCCCCCeecCC
Q psy16691          9 VNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLR-LDLEPQ--SECLYDYVEMYHAASVTPPTRLCG   85 (94)
Q Consensus         9 ~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~-f~l~~~--~~C~~d~l~i~~g~~~~~~~~~cG   85 (94)
                      ..|+..++...|.|.||+||..|+.+..|.|.|.++.+++|.|.|.+ |+++..  ..|.+|||+|++|..  .+++|||
T Consensus       165 ~~c~~~~~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~~~~e~~~~~~C~~D~l~i~dg~~--~~~~~cG  242 (361)
T 4aqb_A          165 ECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGPK--VLGPFCG  242 (361)
T ss_dssp             CCCCCCBCSSEEEEESTTTTSCCCSSCEEEEEEECCTTCEEEEEECSCCBBCCCSSSSSSSSEEEEEETTE--EEEEECB
T ss_pred             ccccceEeCCCcEEecCCCCCCCCCCceeeEEeeeccCcEEEEEEeecccccCCccCccCCCeEEEeeCCe--eEEeeCC
Confidence            45777788999999999999999999999999999999999999987 566643  569999999999853  3789999


Q ss_pred             CCcCCCCc
Q psy16691         86 NHHISALT   93 (94)
Q Consensus        86 ~~~p~~~~   93 (94)
                      ...|..++
T Consensus       243 ~~~p~~~~  250 (361)
T 4aqb_A          243 EKAPEPIS  250 (361)
T ss_dssp             SSCCCCEE
T ss_pred             CCCCCCEe
Confidence            99987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	94
d1nt0a2	114	b.23.1.1 (A:165-278) Mannose-binding protein assoc	4e-09
d1nzia1	117	b.23.1.1 (A:1-117) Complement C1S component {Human	6e-08
d2qqma3	108	b.23.1.1 (A:156-263) Mannose-binding protein assoc	5e-07
d1szba1	121	b.23.1.1 (A:3-123) Mannose-binding protein associa	1e-06

>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 114

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.6 bits (112), Expect = 4e-09
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 15 LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAF---LRLDLEPQSECLYDYVEM 71
           TG  GF++SP +P  Y         IR  E   I L F     +++ P+++C YD +++
Sbjct: 6  FTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSLKI 65

Query: 72 YH 73
            
Sbjct: 66 QT 67

>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 6e-08
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)

Query: 20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP 79
          G I SP +P  Y + ++    I  PE   I L F  LD+E    C YD V++    +   
Sbjct: 6  GEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTEEG 65

Query: 80 P--TRLCGNHHISALTQ 94
              +   N+  S + +
Sbjct: 66 RLCGQRSSNNPHSPIVE 82

>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 5e-07
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQS------ECLYDYVEMYH 73
          G I SP FP  Y N+L+    +  P+ + I+L F   DLEP S       C YD +E++ 
Sbjct: 1  GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWD 60

>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 1e-06
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP 79
          G + SP FP  YAN+ +   T+  P   R+ L F   DLE    C YD+V++   A V  
Sbjct: 11 GRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSSGAKVLA 70

Query: 80 PT--RLCGN 86
              +   +
Sbjct: 71 TLCGQESTD 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	94
d2qqma3	108	Mannose-binding protein associated serine protease	99.91
d1nt0a2	114	Mannose-binding protein associated serine protease	99.9
d1nzia1	117	Complement C1S component {Human (Homo sapiens) [Ta	99.89
d1szba1	121	Mannose-binding protein associated serine protease	99.88
d1sppb_	112	Major seminal plasma glycoprotein PSP-II {Pig (Sus	99.85
d1sppa_	109	Major seminal plasma glycoprotein PSP-I {Pig (Sus	99.81
d1sfpa_	111	Acidic seminal fluid protein (ASFP) {Cow (Bos taur	99.77

>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-24  Score=119.27  Aligned_cols=73  Identities=33%  Similarity=0.634  Sum_probs=64.9

Q ss_pred             eeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCC------CCCCCcEEEEEeCCCCCC--CeecCCCCcCCC
Q psy16691         20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQ------SECLYDYVEMYHAASVTP--PTRLCGNHHISA   91 (94)
Q Consensus        20 g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~------~~C~~d~l~i~~g~~~~~--~~~~cG~~~p~~   91 (94)
                      |.|+||+||..|+++.+|.|.|.++.+++|+|.|.+|+|+..      ..|.+|+|+|++|.....  +++|||...|..
T Consensus         1 G~i~SP~yP~~Y~~~~~C~w~I~~p~~~~I~l~f~~f~l~~~~~~~~~~~C~~D~l~i~dg~~~~~~~~~~~Cg~~~p~~   80 (108)
T d2qqma3           1 GVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGR   80 (108)
T ss_dssp             EEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC----CCCSSCSSEEEEESSSTTTSCEEEEECTTCCCCE
T ss_pred             CEEeCCCCCCCCCCCCeEEEEEEeCCCceeeeEEEEEEeecccccccCCCccccEEEEEeccccCCccccEEeeccCCCC
Confidence            789999999999999999999999999999999999999754      358899999999876543  679999998876


Q ss_pred             C
Q psy16691         92 L   92 (94)
Q Consensus        92 ~   92 (94)
                      +
T Consensus        81 ~   81 (108)
T d2qqma3          81 I   81 (108)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=7.3e-24  Score=118.73  Aligned_cols=81  Identities=26%  Similarity=0.497  Sum_probs=66.9

Q ss_pred             CCcE-EeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEe-EeeeCCC--CCCCCcEEEEEeCCCCCCCeecCCC
Q psy16691         11 ANTS-LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFL-RLDLEPQ--SECLYDYVEMYHAASVTPPTRLCGN   86 (94)
Q Consensus        11 C~~~-~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~-~f~l~~~--~~C~~d~l~i~~g~~~~~~~~~cG~   86 (94)
                      |++. +++..|.|.||+||..|+++.+|.|.|.++++++|+|+|. .|+|+..  ..|.+|+|+|+++..  ..+++||.
T Consensus         1 Cgg~~~~~~~G~i~SP~yP~~Y~~~~~C~w~I~~p~g~~i~l~F~~~f~le~~~~~~c~~d~l~v~~~~~--~~~~~Cg~   78 (114)
T d1nt0a2           1 CSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSLKIQTDKR--EYGPFCGK   78 (114)
T ss_dssp             CEEEEECSSSEEEECTTTTSCCCSSCEEEEEEECCSSCEEEEEECSCCBBCCC----C--CEEEEECSSC--EEEEECBS
T ss_pred             CcCCcCcCCCEEEECCCCCCCCCCCCeEEEEEEeCCCCceeeEEeeeeccccccccccccceeeeeeecc--ceecccCC
Confidence            8885 5688899999999999999999999999999999999996 4888744  569999999998743  36899999


Q ss_pred             CcCCCCc
Q psy16691         87 HHISALT   93 (94)
Q Consensus        87 ~~p~~~~   93 (94)
                      ..|..++
T Consensus        79 ~~p~~~~   85 (114)
T d1nt0a2          79 TLPPRIE   85 (114)
T ss_dssp             SCCCCEE
T ss_pred             cCCCCeE
Confidence            9887653

>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.3e-23  Score=116.91  Aligned_cols=75  Identities=28%  Similarity=0.409  Sum_probs=65.1

Q ss_pred             CeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCC--CeecCCCCcCCCC
Q psy16691         18 TEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP--PTRLCGNHHISAL   92 (94)
Q Consensus        18 ~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~--~~~~cG~~~p~~~   92 (94)
                      ..|.|+||+||..|+++.+|.|.|+++++++|.|.|.+|+|+....|.+|+|+|++|.....  .+++||...+.++
T Consensus         4 ~~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~l~f~~f~le~~~~C~~D~l~I~dg~~~~~~~~~~~~~~~~~~~~   80 (117)
T d1nzia1           4 MYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTEEGRLCGQRSSNNPHSPI   80 (117)
T ss_dssp             SEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCGGGCSSEEEEEC---CCEEECSEECCCCSSCCC
T ss_pred             cEEEEeCCCCCCCCCCCCcEEEEEEcCCCCcEEEEEEeeeEeeecccccceeEEecCCCCCCceeeeecCCCCCCcc
Confidence            45999999999999999999999999999999999999999988889999999999876543  6789998876654

>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.4e-22  Score=114.30  Aligned_cols=75  Identities=29%  Similarity=0.467  Sum_probs=63.7

Q ss_pred             EEeCC-eeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCC--CeecCCCCc
Q psy16691         14 SLTGT-EGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP--PTRLCGNHH   88 (94)
Q Consensus        14 ~~~~~-~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~--~~~~cG~~~   88 (94)
                      .+++. .|.|+||+||..|+++.+|.|.|.++.+++|.|+|.+|+|+....|.+|+|+|++|.....  .+++|+...
T Consensus         4 ~~~~~~~G~i~SP~yP~~Yp~~~~C~W~I~~p~g~~I~l~f~~fdle~~~~C~~D~l~i~dg~~~~~~~~g~~~~~~~   81 (121)
T d1szba1           4 KWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSSGAKVLATLCGQESTDTE   81 (121)
T ss_dssp             CCCCCCEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCCTTSCSSEEEEESSSSEEEEECSBTTTTCS
T ss_pred             CCCCCCCeEEeCCCCCCCCCCCCeEEEEEEeCCCceeEEEeeeeeeeeeccccccceeeecCCccccceeccccCCCc
Confidence            34444 6999999999999999999999999999999999999999998899999999999865432  456665543

>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-II
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.85  E-value=1.3e-21  Score=109.32  Aligned_cols=73  Identities=23%  Similarity=0.364  Sum_probs=63.8

Q ss_pred             CCCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCC-CeecCC
Q psy16691          7 NPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP-PTRLCG   85 (94)
Q Consensus         7 ~~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~-~~~~cG   85 (94)
                      .+..|++.++...|.|.||+||+.|     |.|.|.++++++|+|+|.+|+++    |..|+|+||||..... ++++||
T Consensus         5 ~~~~CGg~l~~~~G~i~SP~~P~~~-----C~W~I~~p~~~~I~l~f~~f~~~----C~~d~l~I~dg~~~~~~l~~~Cg   75 (112)
T d1sppb_           5 GPDECGRVIKDTSGSISNTDRQKNL-----CTWTILMKPDQKVRMAIPYLNLA----CGKEYVEVFDGLLSGPSYGKLCA   75 (112)
T ss_dssp             GGGGTTEEECCSEEEEECCSSCCSE-----EEEEEECCTTCEEEEEEEEEECC----BTTEEEEEESSSTTSCEEEEESE
T ss_pred             CCCcCCCEEeCCcceEeCCCCCCCc-----eEEEEecCCcEEEEEEEEehhcc----cccceeEEEeccCcceeeeeecC
Confidence            3568999999999999999998765     99999999999999999999985    7789999999875543 689999


Q ss_pred             CCc
Q psy16691         86 NHH   88 (94)
Q Consensus        86 ~~~   88 (94)
                      ...
T Consensus        76 ~~~   78 (112)
T d1sppb_          76 GAA   78 (112)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            654

>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-I
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.81  E-value=2e-19  Score=99.73  Aligned_cols=69  Identities=20%  Similarity=0.300  Sum_probs=61.1

Q ss_pred             CCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCC-CeecCCC
Q psy16691          9 VNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP-PTRLCGN   86 (94)
Q Consensus         9 ~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~-~~~~cG~   86 (94)
                      ..|++.+++..|.|.||+||+     .+|.|.|.+|++++|+|.|.+|+++    |..|+|+||+|..... ++++||.
T Consensus         4 ~~Cgg~l~~~~G~i~Sp~yP~-----~~C~W~I~~p~g~~I~l~f~~f~~~----c~~d~l~i~~g~~~~~~~~~~c~~   73 (109)
T d1sppa_           4 HACGGRLTDDYGTIFTYKGPK-----TECVWTLQVDPKYKLLVSIPTLNLT----CGKEYVEVLEGAPGSKSLGKFCEG   73 (109)
T ss_dssp             CSSCEEEECSEEEEECCCSSC-----SEEEEEEECCTTSEEEEEEEEEECC----TTTEEEEEESSSTTSCEEEEESEE
T ss_pred             ccCCCEEeCCCEEEeCCCCCC-----CcEEEEEEEccCceeEEEEeccccc----cceeeeeeecCCCccceeeeecCC
Confidence            569999999999999999983     5899999999999999999999975    6699999999876554 5799985

>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Acidic seminal fluid protein (ASFP)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=9.4e-19  Score=97.19  Aligned_cols=72  Identities=21%  Similarity=0.360  Sum_probs=62.6

Q ss_pred             CCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCC-CeecCCCC
Q psy16691          9 VNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP-PTRLCGNH   87 (94)
Q Consensus         9 ~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~-~~~~cG~~   87 (94)
                      +.|++.++...|.|.||     |+++.+|.|.|.++.+++|+|.|.+|+++    |..|+|+|+||..... +.++||..
T Consensus         5 ~~Cgg~lt~~~G~i~SP-----y~~~~~C~w~I~~p~g~~I~l~f~~f~~~----c~~d~v~i~dg~~~~~~~~~~cg~~   75 (111)
T d1sfpa_           5 TNCGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQLN----CNKESLEIIDGLPGSPVLGKICEGS   75 (111)
T ss_dssp             CSSCEEECCSEEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEECC----TTTEEEEEESSSTTSCEEEEESEEE
T ss_pred             cCCCcEEECCceeEcCC-----CCCCCcEEEEEEcCCCceeeEEEeecccc----cceeeeeecCCccceeeeccccCCC
Confidence            68999999999999998     55678999999999999999999999975    7789999999875543 67999976


Q ss_pred             cC
Q psy16691         88 HI   89 (94)
Q Consensus        88 ~p   89 (94)
                      .+
T Consensus        76 ~~   77 (111)
T d1sfpa_          76 LM   77 (111)
T ss_dssp             EE
T ss_pred             cC
Confidence            43