Psyllid ID: psy16695

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MWSWNYLVPSLRWNEYHPVDNTHLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH
Secondary Structure (PSIPRED)
cccccEEEEccccccccccccEEEEEEccEEEEEEEcccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHEccccccccccccccccHHHHHHHHccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mwswnylvpslrwneyhpvdnthliqqqeqhrhidvaptnyqrsgsnepgrnlaSSGLDLILKKIYELYADyalknpfyslempircELFDTHLQNLLQQH
Flexible Loop (DISEMBL)
MWSWNYLVPSLRWNEYHPVDNTHLIQQQEQHRHIDVAPTnyqrsgsnepgrNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH
Low Complexity Region (SEG)
MWSWNYLVPSLRWNEYHPVDNTHLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH
Disordered region (IsUnstruct)
*WSWNYLVPSLRWNEYHPVDNTHLIQ******************************GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNL****
Disordered Region (DISOPRED)
*WSWNYLVPSLRWNEYHPVDNTHLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ*
Disordered Region (DISEMBL)
MWSWNYLVPSLRWNEYHPVDNTHLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH
Disordered Region (DISPRO)
*WSWNYLVPSLRWNEYHPVDNTHLIQQQEQHRHIDVAPTNY*************SSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWSWNYLVPSLRWNEYHPVDNTHLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q5R9J9	219	Trafficking protein parti	yes	N/A	0.435	0.200	0.681	1e-12
Q9Y296	219	Trafficking protein parti	yes	N/A	0.435	0.200	0.681	1e-12
Q2TBL9	219	Trafficking protein parti	yes	N/A	0.435	0.200	0.681	1e-12
Q69BT7	219	Trafficking protein parti	yes	N/A	0.435	0.200	0.681	1e-12
Q9ES56	219	Trafficking protein parti	yes	N/A	0.435	0.200	0.681	1e-12
O43041	132	Transport protein particl	yes	N/A	0.396	0.303	0.625	1e-09
Q54UU1	135	Trafficking protein parti	yes	N/A	0.405	0.303	0.609	5e-08
Q03784	219	Trafficking protein parti	yes	N/A	0.475	0.219	0.479	3e-07

>sp|Q5R9J9|TPPC4_PONAB Trafficking protein particle complex subunit 4 OS=Pongo abelii GN=TRAPPC4 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 40/44 (90%)

Query: 56  SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
           +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Pongo abelii (taxid: 9601)

>sp|Q9Y296|TPPC4_HUMAN Trafficking protein particle complex subunit 4 OS=Homo sapiens GN=TRAPPC4 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 40/44 (90%)

Query: 56  SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
           +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4 OS=Bos taurus GN=TRAPPC4 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 40/44 (90%)

Query: 56  SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
           +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|Q69BT7|TPPC4_RAT Trafficking protein particle complex subunit 4 OS=Rattus norvegicus GN=Trappc4 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 40/44 (90%)

Query: 56  SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
           +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Rattus norvegicus (taxid: 10116)

>sp|Q9ES56|TPPC4_MOUSE Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 40/44 (90%)

Query: 56  SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
           +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

May play a role in vesicular transport from endoplasmic reticulum to Golgi. May play a role in dendrite postsynaptic membrane trafficking.

Mus musculus (taxid: 10090)

>sp|O43041|TRS23_SCHPO Transport protein particle subunit trs23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 62  LKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
           L+K YELY+DY LKNPFY+LEMPI+C+LFD  L+  +  H
Sbjct: 93  LQKFYELYSDYVLKNPFYTLEMPIKCQLFDEQLKRYIDSH 132

TRAPP plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 30/41 (73%)

Query: 58  LDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLL 98
           L+ +L  +YELY DY LKNPFY +EM IRC+LFD  L  LL
Sbjct: 91  LEELLHGVYELYTDYVLKNPFYEIEMQIRCDLFDYKLNRLL 131

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Dictyostelium discoideum (taxid: 44689)

>sp|Q03784|TRS23_YEAST Trafficking protein particle complex subunit 23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRS23 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 34/48 (70%)

Query: 52  NLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
           NLA    D  L+K+Y LY+DY +K+P YS+EMPIR  LFD  ++ +++
Sbjct: 169 NLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216

Component of the TRAPP I, TRAPP II and TRAPP III complexes which act as guanine nucleotide exchange factors (GEF) for YPT1. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II plays a role in intra-Golgi transport. TRAPP III plays a role in autophagosome formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
170059349	217	synbindin [Culex quinquefasciatus] gi|16	0.435	0.202	0.795	2e-14
157115413	179	synbindin [Aedes aegypti]	0.435	0.245	0.795	2e-14
403183523	158	AAEL007185-PA, partial [Aedes aegypti]	0.435	0.278	0.795	2e-14
157112838	115	synbindin [Aedes aegypti] gi|108877918|g	0.435	0.382	0.795	4e-14
242022136	217	trafficking protein particle complex sub	0.445	0.207	0.8	4e-14
195443456	219	GK18753 [Drosophila willistoni] gi|19416	0.445	0.205	0.777	5e-14
31223771	217	AGAP008106-PA [Anopheles gambiae str. PE	0.435	0.202	0.795	5e-14
66558617	217	PREDICTED: trafficking protein particle	0.435	0.202	0.772	5e-14
312380841	1402	hypothetical protein AND_06989 [Anophele	0.445	0.032	0.8	5e-14
380012539	217	PREDICTED: trafficking protein particle	0.435	0.202	0.772	6e-14

>gi|170059349|ref|XP_001865324.1| synbindin [Culex quinquefasciatus] gi|167878152|gb|EDS41535.1| synbindin [Culex quinquefasciatus]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 42/44 (95%)

Query: 57  GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
           G+D++L++IYELYADY LKNPFYSLEMPIRCELFDT+LQ LL+Q
Sbjct: 165 GMDVLLRRIYELYADYVLKNPFYSLEMPIRCELFDTNLQGLLEQ 208

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115413|ref|XP_001652597.1| synbindin [Aedes aegypti]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 42/44 (95%)

Query: 57  GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
           G+D++LK+IYELYAD+ LKNPFYSLEMPIRCELFDT+LQ LL+Q
Sbjct: 127 GMDVLLKRIYELYADFVLKNPFYSLEMPIRCELFDTNLQALLEQ 170

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403183523|gb|EAT41144.2| AAEL007185-PA, partial [Aedes aegypti]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 42/44 (95%)

Query: 57  GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
           G+D++LK+IYELYAD+ LKNPFYSLEMPIRCELFDT+LQ LL+Q
Sbjct: 106 GMDVLLKRIYELYADFVLKNPFYSLEMPIRCELFDTNLQALLEQ 149

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112838|ref|XP_001657639.1| synbindin [Aedes aegypti] gi|108877918|gb|EAT42143.1| AAEL006295-PA [Aedes aegypti]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 42/44 (95%)

Query: 57  GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
           G+D++LK+IYELYAD+ LKNPFYSLEMPIRCELFDT+LQ LL+Q
Sbjct: 63  GMDVLLKRIYELYADFVLKNPFYSLEMPIRCELFDTNLQALLEQ 106

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022136|ref|XP_002431497.1| trafficking protein particle complex subunit, putative [Pediculus humanus corporis] gi|212516791|gb|EEB18759.1| trafficking protein particle complex subunit, putative [Pediculus humanus corporis]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 44/45 (97%)

Query: 56  SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
           +G++ +LKKIYELYADYALKNPFYSLEMPIRCELF+++LQNLL+Q
Sbjct: 164 TGMEPLLKKIYELYADYALKNPFYSLEMPIRCELFESNLQNLLEQ 208

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195443456|ref|XP_002069433.1| GK18753 [Drosophila willistoni] gi|194165518|gb|EDW80419.1| GK18753 [Drosophila willistoni]

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/45 (77%), Positives = 41/45 (91%)

Query: 56  SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
           +G+DL+L+K+YELY+DY LKNPFYSLEMPIRCELFDT LQ LL Q
Sbjct: 164 NGMDLLLRKVYELYSDYVLKNPFYSLEMPIRCELFDTKLQELLSQ 208

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|31223771|ref|XP_317351.1| AGAP008106-PA [Anopheles gambiae str. PEST] gi|21300340|gb|EAA12485.1| AGAP008106-PA [Anopheles gambiae str. PEST]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/44 (79%), Positives = 41/44 (93%)

Query: 57  GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
           G+D++L++IYELYADY LKNPFYSLEMPIRCELFDT+LQ LL Q
Sbjct: 165 GIDVLLRRIYELYADYVLKNPFYSLEMPIRCELFDTNLQTLLDQ 208

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66558617|ref|XP_624818.1| PREDICTED: trafficking protein particle complex subunit 4-like [Apis mellifera]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 44/44 (100%)

Query: 56  SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
           SG++++LK++YELYADYALKNPFYSLEMPIRCELF+T+LQ+LL+
Sbjct: 164 SGIEILLKRVYELYADYALKNPFYSLEMPIRCELFETNLQSLLE 207

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312380841|gb|EFR26730.1| hypothetical protein AND_06989 [Anopheles darlingi]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/45 (80%), Positives = 41/45 (91%)

Query: 56  SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
           SG+D +L++IYELYADY LKNPFYSLEMPIRCELFDT+LQ LL Q
Sbjct: 188 SGIDGLLRRIYELYADYVLKNPFYSLEMPIRCELFDTNLQALLDQ 232

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012539|ref|XP_003690337.1| PREDICTED: trafficking protein particle complex subunit 4-like [Apis florea]

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 44/44 (100%)

Query: 56  SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
           SG++++LK++YELYADYALKNPFYSLEMPIRCELF+T+LQ+LL+
Sbjct: 164 SGIEILLKRVYELYADYALKNPFYSLEMPIRCELFETNLQSLLE 207

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
FB|FBgn0260861	219	Trs23 [Drosophila melanogaster	0.445	0.205	0.755	4.2e-15
ZFIN|ZDB-GENE-040426-1734	219	trappc4 "trafficking protein p	0.435	0.200	0.704	7.9e-14
UNIPROTKB|F1NU38	210	TRAPPC4 "Uncharacterized prote	0.435	0.209	0.681	4.4e-13
UNIPROTKB|F1NXY8	218	TRAPPC4 "Uncharacterized prote	0.435	0.201	0.681	4.4e-13
UNIPROTKB|Q2TBL9	219	TRAPPC4 "Trafficking protein p	0.435	0.200	0.681	5.6e-13
UNIPROTKB|E2RSA9	219	TRAPPC4 "Uncharacterized prote	0.435	0.200	0.681	5.6e-13
UNIPROTKB|B4DME1	165	TRAPPC4 "Trafficking protein p	0.435	0.266	0.681	5.6e-13
UNIPROTKB|E9PKS9	126	TRAPPC4 "Trafficking protein p	0.435	0.349	0.681	5.6e-13
UNIPROTKB|E9PQE8	176	TRAPPC4 "Trafficking protein p	0.435	0.25	0.681	5.6e-13
UNIPROTKB|Q9Y296	219	TRAPPC4 "Trafficking protein p	0.435	0.200	0.681	5.6e-13

FB|FBgn0260861 Trs23 [Drosophila melanogaster (taxid:7227)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 34/45 (75%), Positives = 40/45 (88%)

Query:    56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
             +G+DL+L+K+YELY+DY LKNPFYSLEMPIRCELFD  LQ LL Q
Sbjct:   164 NGIDLLLRKVYELYSDYVLKNPFYSLEMPIRCELFDNKLQELLAQ 208

GO:0030008 "TRAPP complex" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

ZFIN|ZDB-GENE-040426-1734 trappc4 "trafficking protein particle complex 4" [Danio rerio (taxid:7955)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 31/44 (70%), Positives = 41/44 (93%)

Query:    56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
             SG+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L++ L+
Sbjct:   164 SGIDALLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKSALE 207

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1NU38 TRAPPC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 30/44 (68%), Positives = 40/44 (90%)

Query:    56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
             +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+
Sbjct:   155 AGIDALLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 198

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1NXY8 TRAPPC4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 30/44 (68%), Positives = 40/44 (90%)

Query:    56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
             +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+
Sbjct:   163 AGIDALLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 206

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

UNIPROTKB|Q2TBL9 TRAPPC4 "Trafficking protein particle complex subunit 4" [Bos taurus (taxid:9913)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 30/44 (68%), Positives = 40/44 (90%)

Query:    56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
             +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+
Sbjct:   164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|E2RSA9 TRAPPC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 30/44 (68%), Positives = 40/44 (90%)

Query:    56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
             +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+
Sbjct:   164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

GO:0030425 "dendrite" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005795 "Golgi stack" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|B4DME1 TRAPPC4 "Trafficking protein particle complex subunit 4" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 30/44 (68%), Positives = 40/44 (90%)

Query:    56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
             +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+
Sbjct:   110 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 153

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|E9PKS9 TRAPPC4 "Trafficking protein particle complex subunit 4" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 30/44 (68%), Positives = 40/44 (90%)

Query:    56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
             +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+
Sbjct:    71 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 114

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|E9PQE8 TRAPPC4 "Trafficking protein particle complex subunit 4" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 30/44 (68%), Positives = 40/44 (90%)

Query:    56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
             +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+
Sbjct:   121 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 164

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q9Y296 TRAPPC4 "Trafficking protein particle complex subunit 4" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 30/44 (68%), Positives = 40/44 (90%)

Query:    56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
             +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+
Sbjct:   164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005795 "Golgi stack" evidence=ISS

GO:0008021 "synaptic vesicle" evidence=ISS

GO:0016358 "dendrite development" evidence=ISS

GO:0030425 "dendrite" evidence=ISS

GO:0045202 "synapse" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ES56	TPPC4_MOUSE	No assigned EC number	0.6818	0.4356	0.2009	yes	N/A
Q69BT7	TPPC4_RAT	No assigned EC number	0.6818	0.4356	0.2009	yes	N/A
Q9Y296	TPPC4_HUMAN	No assigned EC number	0.6818	0.4356	0.2009	yes	N/A
Q54UU1	TPPC4_DICDI	No assigned EC number	0.6097	0.4059	0.3037	yes	N/A
Q2TBL9	TPPC4_BOVIN	No assigned EC number	0.6818	0.4356	0.2009	yes	N/A
Q5R9J9	TPPC4_PONAB	No assigned EC number	0.6818	0.4356	0.2009	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	101
pfam04099	135	pfam04099, Sybindin, Sybindin-like family	1e-19
COG5122	134	COG5122, TRS23, Transport protein particle (TRAPP)	3e-15
pfam04628	127	pfam04628, Sedlin_N, Sedlin, N-terminal conserved	0.002

>gnl|CDD|146632 pfam04099, Sybindin, Sybindin-like family

 Score = 77.0 bits (190), Expect = 1e-19
 Identities = 28/45 (62%), Positives = 33/45 (73%)

Query: 57  GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
             D +L+K YELY+DY LKNPFYSLEMPIRCELFD  L   ++  
Sbjct: 91  NRDSLLRKYYELYSDYVLKNPFYSLEMPIRCELFDEKLDQYVRSL 135

Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Length = 135

>gnl|CDD|227451 COG5122, TRS23, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

 Score = 66.1 bits (161), Expect = 3e-15
 Identities = 25/40 (62%), Positives = 31/40 (77%)

Query: 62  LKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
           L+KIY LY+DY  KNPFYS EMPI+C LFD HL+ + + H
Sbjct: 95  LQKIYSLYSDYVTKNPFYSPEMPIQCSLFDEHLKRMFEGH 134

Length = 134

>gnl|CDD|218183 pfam04628, Sedlin_N, Sedlin, N-terminal conserved region

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 55  SSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNL 97
              +    ++++ELY    + NPFY    PIR   FD  ++ L
Sbjct: 83  DDDIKQFFREVHELYIKTLM-NPFYEPNDPIRSPAFDAKVRRL 124

Mutations in this protein are associated with the X-linked spondyloepiphyseal dysplasia tarda syndrome (OMIM:313400). This family represents an N-terminal conserved region. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	99.83
KOG3369|consensus	199		99.75
PF04628	132	Sedlin_N: Sedlin, N-terminal conserved region; Int	99.69
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	99.66
KOG3368|consensus	140		99.66
COG5603	136	TRS20 Subunit of TRAPP, an ER-Golgi tethering comp	99.41
KOG3487|consensus	139		99.22
KOG3444|consensus	121		97.97

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=99.83  E-value=3.3e-21  Score=138.82  Aligned_cols=74  Identities=42%  Similarity=0.680  Sum_probs=56.9

Q ss_pred             hhhhhhcccceeeecccccccCCCCCCCCCCCchHH-HHHHHHHHHHHHhhHhcCCCCCCCCcccchhHHHHHHHHHhh
Q psy16695         23 HLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGL-DLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ  100 (101)
Q Consensus        23 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~~~~I-r~~fq~VYeLYVdYVvKNPFY~~d~PI~SelFd~~V~~lvrk  100 (101)
                      ..++.....+|+++|||.+||+    +.+|++.+.. ..+++.+|++|+|||+|||||++||||+|++||.+|++++++
T Consensus        68 ~~~~T~~yklh~~eT~TGlKFv----l~td~~~~~~~~~l~~~~~~lY~dyV~KNPfy~~~~pI~~~lF~~~l~~~~~~  142 (142)
T PF04099_consen   68 ESFETDTYKLHCFETPTGLKFV----LITDPNVPSLRDELLRIYYELYVDYVVKNPFYSLEMPIRCELFDTKLDQYVKS  142 (142)
T ss_dssp             EEEEESS-EEEEEE-TTS-EEE----EEE-TTCCHCHHHHHHHHHHHHHHHHHS-TTS-TTS----HHHHHHHHHHHHC
T ss_pred             EEEEeCCEEEEEEEcCcCcEEE----EEecCCCccHHHHHHHHHHHHHHHHHhhCCCCCCCCcEehHHHHHHHHHHHhC
Confidence            6678889999999999999999    9999999444 556677779999999999999999999999999999999874

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>KOG3369|consensus

Probab=99.75  E-value=1.1e-18  Score=133.73  Aligned_cols=74  Identities=47%  Similarity=0.747  Sum_probs=69.8

Q ss_pred             hhhhhhcccceeeecccccccCCCCCCCCCCCchHHHHHHHHHHHHHHhhHhcCCCCCCCCcccchhHHHHHHHHHhh
Q psy16695         23 HLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ  100 (101)
Q Consensus        23 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~~~~Ir~~fq~VYeLYVdYVvKNPFY~~d~PI~SelFd~~V~~lvrk  100 (101)
                      -++|...-..|||-|=|-.|||    ..+++....++.+|+++|++|+|||+|||||+++|||||++||.+++.++.+
T Consensus       124 e~LetdtF~l~~~QTlTG~KFV----vis~~~~~~aD~lLrKiYelYsDyvlKNPfYSlEMPIRc~lFDe~lk~~le~  197 (199)
T KOG3369|consen  124 EVLETDTFTLHIFQTLTGTKFV----VIAEPGTQGADSLLRKIYELYSDYVLKNPFYSLEMPIRCELFDEKLKFLLES  197 (199)
T ss_pred             EEEEeccEEEEEEEccCCcEEE----EEecCCchhHHHHHHHHHHHHHHHhhcCCccCcccceeHHHhhHHHHHHHhh
Confidence            5777788899999999999999    8899999999999999999999999999999999999999999999998865

>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport

Probab=99.69  E-value=1.2e-17  Score=118.17  Aligned_cols=77  Identities=23%  Similarity=0.347  Sum_probs=62.9

Q ss_pred             hhhhhhcccceeeecccccccCCCCC-CCCCCCchHHHHHHHHHHHHHHhhHhcCCCCCCCCcccchhHHHHHHHHHhh
Q psy16695         23 HLIQQQEQHRHIDVAPTNYQRSGSNE-PGRNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ  100 (101)
Q Consensus        23 ~~~~~~~~~~~~~~~p~~~~~~~~~~-~~s~~~~~~Ir~~fq~VYeLYVdYVvKNPFY~~d~PI~SelFd~~V~~lvrk  100 (101)
                      .|-.+++.-++-|+|+|.+|++--.+ .....++++||.||++||++|++ +++||||.+++||+|+.|+++|+++++|
T Consensus        55 ~l~~~~~~~vygyvT~t~~Kfvl~~~~~~~~~~d~~ik~fF~~vh~~Y~~-~~~NPF~~~~~~I~S~~Fd~~v~~l~~k  132 (132)
T PF04628_consen   55 LLDPFEDYKVYGYVTNTGIKFVLVHDMSDNSIRDEDIKQFFKEVHELYVK-ALCNPFYQPGTPIKSPKFDSRVRALAKK  132 (132)
T ss_dssp             EEEEETTEEEEEEETTT--EEEEEECGGG-S--HHHHHHHHHHHHHHHHH-HHTSTTCGCT-HHHHHHHHHHHHHHHHH
T ss_pred             ceehhhhHHHHhhhccCceeEEEEEecccCCcchHHHHHHHHHHHHHHHH-HccCCCCCCCCCcCCHHHHHHHHHHhcC
Confidence            56777999999999999999983222 23358999999999999999999 8899999999999999999999999986

Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=99.66  E-value=6.9e-17  Score=117.40  Aligned_cols=75  Identities=36%  Similarity=0.549  Sum_probs=68.6

Q ss_pred             hhhhhhcccceeeecccccccCCCCCCCCCCCchHHHHHHHHHHHHHHhhHhcCCCCCCCCcccchhHHHHHHHHHhhC
Q psy16695         23 HLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH  101 (101)
Q Consensus        23 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~~~~Ir~~fq~VYeLYVdYVvKNPFY~~d~PI~SelFd~~V~~lvrk~  101 (101)
                      -++++..-+.||+-|-|-.|||    ..+.-+..+.+--+|++|++|+|||+|||||+++|||+|.+||.+|++++..|
T Consensus        60 ~~l~~~~f~m~I~qT~TG~kFV----~~~~k~t~na~~ql~kiY~lYsdYV~knPfys~EMPI~c~lFde~lkrm~e~~  134 (134)
T COG5122          60 LVLYFRNFVMTIFQTTTGTKFV----FVAEKRTVNALFQLQKIYSLYSDYVTKNPFYSPEMPIQCSLFDEHLKRMFEGH  134 (134)
T ss_pred             EEEEeccEEEEEEEecCCcEEE----EEecCCchhHHHHHHHHHHHHHHHhhcCCCCCcccceehhhhhHHHHHHhcCC
Confidence            5678888899999999999999    77777777888889999999999999999999999999999999999998764

>KOG3368|consensus

Probab=99.66  E-value=1.2e-16  Score=117.45  Aligned_cols=67  Identities=30%  Similarity=0.541  Sum_probs=64.1

Q ss_pred             ccceeeecccccccCCCCCCCCCCCchHHHHHHHHHHH-HHHhhHhcCCCCC--CCCcccchhHHHHHHHHHhh
Q psy16695         30 QHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYE-LYADYALKNPFYS--LEMPIRCELFDTHLQNLLQQ  100 (101)
Q Consensus        30 ~~~~~~~~p~~~~~~~~~~~~s~~~~~~Ir~~fq~VYe-LYVdYVvKNPFY~--~d~PI~SelFd~~V~~lvrk  100 (101)
                      --.|.|||||..|++    +++|++..++|++||+||. +|||||+|||+|+  +++||+||.|..++++++++
T Consensus        69 YklhfyeTptglk~v----l~Tdpk~~~ir~vLq~IYs~lyVE~Vvknpl~~~~~~~~i~~E~fr~~ld~~vrs  138 (140)
T KOG3368|consen   69 YKLHFYETPTGLKFV----LNTDPKAGSIRDVLQYIYSHLYVEYVVKNPLYTYDPGSPIRSELFRKILDRFVRS  138 (140)
T ss_pred             eEEEEEEcCCCcEEE----EecCCCcccHHHHHHHHHHHHHHHHHHcCcccccCCCCccchHHHHHHHHhhhcc
Confidence            457999999999999    9999999999999999996 9999999999999  99999999999999999875

>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

Probab=99.41  E-value=3.6e-13  Score=98.33  Aligned_cols=75  Identities=23%  Similarity=0.320  Sum_probs=63.5

Q ss_pred             hhhhhhcccceeeecccccccCCCCCCCCCCCchHHHHHHHHHHHHHHhhHhcCCCCCCCCcccchhHHHHHHHHHhhC
Q psy16695         23 HLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH  101 (101)
Q Consensus        23 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~~~~Ir~~fq~VYeLYVdYVvKNPFY~~d~PI~SelFd~~V~~lvrk~  101 (101)
                      +|=+|-+--|--|+||+..||.--   --+.+++++|.||++||++|++ .++||||++++||+|++||.+|+++.|++
T Consensus        61 ~~d~f~~l~IsAYi~pSgmkf~~i---H~n~s~~N~rsF~qevHely~k-tLmspfy~~~~pirsqafd~~Vr~~ar~~  135 (136)
T COG5603          61 CLDSFGDLRISAYIMPSGMKFLFI---HQNQSRKNARSFLQEVHELYAK-TLMSPFYEPDEPIRSQAFDDGVREAARVC  135 (136)
T ss_pred             HHHhhCCeEEEEEEccCCceEEEE---eccchhhhHHHHHHHHHHHHHH-HhhCcccCCCccccchhhhhhHHHHHHhh
Confidence            444555666888999999999832   2233688999999999999999 88999999999999999999999998864

>KOG3487|consensus

Probab=99.22  E-value=1.8e-11  Score=90.13  Aligned_cols=75  Identities=27%  Similarity=0.417  Sum_probs=63.6

Q ss_pred             hhhhhhcccceeeecccccccCCCCCCCCCCCchHHHHHHHHHHHHHHhhHhcCCCCCCCCcccchhHHHHHHHHHhhC
Q psy16695         23 HLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH  101 (101)
Q Consensus        23 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~~~~Ir~~fq~VYeLYVdYVvKNPFY~~d~PI~SelFd~~V~~lvrk~  101 (101)
                      |.=.|-|-=|-.|+|+....|.-   +-.+-.+++++.||+++|++|++ .++||||.+++||+|++||.+|+.+.++|
T Consensus        62 tVDkfne~~VSAyvTas~i~f~m---lh~~~~~~~ik~Ffqev~elyik-~lmnpFy~~~dpirs~afd~kv~~~~rkh  136 (139)
T KOG3487|consen   62 TVDKFNELFVSAYVTASHIRFIM---LHINRADDNIKLFFQEVHELYIK-TLMNPFYEINDPIRSPAFDHKVRGLARKH  136 (139)
T ss_pred             HHHhhcceeEEEEEccCcEEEEE---EeeccccccHHHHHHHHHHHHHH-HHhCcccccCCccccHHHHHHHHHHHHHH
Confidence            44466777788999999997762   23344588999999999999999 77899999999999999999999998875

>KOG3444|consensus

Probab=97.97  E-value=8.4e-06  Score=59.06  Aligned_cols=55  Identities=16%  Similarity=0.129  Sum_probs=45.8

Q ss_pred             hhcccceeeecccccccCCCC-CCCCCCCchHHHHHHHHHHHHHHhhHhcCCCCCCC
Q psy16695         27 QQEQHRHIDVAPTNYQRSGSN-EPGRNLASSGLDLILKKIYELYADYALKNPFYSLE   82 (101)
Q Consensus        27 ~~~~~~~~~~~p~~~~~~~~~-~~~s~~~~~~Ir~~fq~VYeLYVdYVvKNPFY~~d   82 (101)
                      -+.+.+--|+|-|.+||.--. ..+.+.++.++|++||.+|-+|++ ++|||||.|+
T Consensus        65 ted~kvYgfvtNTkVKFIlvvdssd~avreteiRsv~r~~h~l~td-~~~npfy~pg  120 (121)
T KOG3444|consen   65 TEDYKVYGFVTNTKVKFILVVDSSDYAVRETEIRSVFRILHLLYTD-LSCNPFYLPG  120 (121)
T ss_pred             ccceeEEEEEeccEEEEEEEEcCCcceehhHHHHHHHHHHHHHHHH-heecceeccC
Confidence            356677788999999985211 146788999999999999999999 9999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	101
2j3t_D	219	The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23		8e-14
2zmv_A	227	Crystal Structure Of Synbindin Length = 227		8e-14
3cue_A	219	Crystal Structure Of A Trapp Subassembly Activating		3e-08

>pdb|2J3T|D Chain D, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex Length = 219

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56  SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
           +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

>pdb|2ZMV|A Chain A, Crystal Structure Of Synbindin Length = 227

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56  SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
           +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

>pdb|3CUE|A Chain A, Crystal Structure Of A Trapp Subassembly Activating The Rab Ypt1p Length = 219

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 52  NLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
           NLA    D  L+K+Y LY+DY +K+P YS+EMPIR  LFD  ++ +++
Sbjct: 169 NLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
3cue_A	219	Transport protein particle 23 kDa subunit; membran	1e-20
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	5e-20
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	1e-17
2j3w_A	142	Sedlin, trafficking protein particle complex prote	2e-13
3cue_C	159	Transport protein particle 18 kDa subunit; membran	6e-11

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 219

 Score = 81.6 bits (200), Expect = 1e-20
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 37  APTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 96
                 +    +   NLA    D  L+K+Y LY+DY +K+P YS+EMPIR  LFD  ++ 
Sbjct: 154 TIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKK 213

Query: 97  LLQQ 100
           +++ 
Sbjct: 214 MVEN 217

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A Length = 219

 Score = 79.4 bits (195), Expect = 5e-20
 Identities = 30/47 (63%), Positives = 40/47 (85%)

Query: 55  SSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
            +G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+  L+  
Sbjct: 163 QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVA 209

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Length = 145

 Score = 71.4 bits (175), Expect = 1e-17
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 55  SSGLDLILKKIYE-LYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
              +  +L  IY  LY ++ +KNP   L   ++ ELF + L + ++ 
Sbjct: 90  VGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRS 136

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Length = 142

 Score = 60.4 bits (146), Expect = 2e-13
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 56  SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
            G+      +Y+LY  +A+ NPFY    PIR   FD  +Q L ++H
Sbjct: 95  DGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKH 139

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 159

 Score = 54.5 bits (131), Expect = 6e-11
 Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 14/62 (22%)

Query: 52  NLASSGLDLILKKIY-ELYADYALKNPFYSLEMP-------------IRCELFDTHLQNL 97
           +        +L+ IY  +Y  Y   N     +               I    F + L++ 
Sbjct: 93  DFKQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLESF 152

Query: 98  LQ 99
           L 
Sbjct: 153 LA 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	99.89
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	99.84
3cue_A	219	Transport protein particle 23 kDa subunit; membran	99.83
3cue_C	159	Transport protein particle 18 kDa subunit; membran	99.83
2j3w_A	142	Sedlin, trafficking protein particle complex prote	99.82
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	98.72

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=99.89  E-value=1.6e-24  Score=155.26  Aligned_cols=75  Identities=24%  Similarity=0.429  Sum_probs=72.1

Q ss_pred             hhhhhhcccceeeecccccccCCCCCCCCCCCchHHHHHHHHHH-HHHHhhHhcCCCCCCCCcccchhHHHHHHHHHhhC
Q psy16695         23 HLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIY-ELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH  101 (101)
Q Consensus        23 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~~~~Ir~~fq~VY-eLYVdYVvKNPFY~~d~PI~SelFd~~V~~lvrk~  101 (101)
                      .+++.++..+|.|+|||.+||+    +.+|++++++|.+|++|| ++|+|||||||||++||||+|++||.+|++++++.
T Consensus        62 ~~~~t~~ykl~~~~T~TgiKFv----l~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~  137 (145)
T 2j3t_C           62 LSFQTSRYKLHYYETPTGIKVV----MNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL  137 (145)
T ss_dssp             EEEECSSCEEEEEECTTSCEEE----EEECTTCCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTS
T ss_pred             EEEecCCEEEEEEEcCCCCEEE----EEecCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhC
Confidence            6778999999999999999999    999999999999999999 89999999999999999999999999999999874

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=99.84  E-value=1.8e-21  Score=149.71  Aligned_cols=74  Identities=43%  Similarity=0.729  Sum_probs=71.6

Q ss_pred             hhhhhhcccceeeecccccccCCCCCCCCCCCchHHHHHHHHHHHHHHhhHhcCCCCCCCCcccchhHHHHHHHHHhh
Q psy16695         23 HLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ  100 (101)
Q Consensus        23 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~~~~Ir~~fq~VYeLYVdYVvKNPFY~~d~PI~SelFd~~V~~lvrk  100 (101)
                      ..++.++..+|.|+|||.+||+    +.+|++++++|.+|++||++|+|||||||||.++|||+|++|+.+|++++++
T Consensus       135 ~~~~T~~ykl~~y~T~TgiKFV----Lltd~~~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s~~Fd~~v~~l~~~  208 (219)
T 2j3t_D          135 EMLETDTFKLHCYQTLTGIKFV----VLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEV  208 (219)
T ss_dssp             SEEEESSCEEEEEECTTSCEEE----EEECTTCCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCCHHHHHHHHHHHHH
T ss_pred             eEEecCceEEEEEEcCCCCEEE----EEecCCchHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHHHHHHHHHHHH
Confidence            6778999999999999999999    9999999999999999999999999999999999999999999999999986

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=99.83  E-value=1.9e-21  Score=149.87  Aligned_cols=74  Identities=30%  Similarity=0.485  Sum_probs=69.6

Q ss_pred             hhhhhhcccceeeecccccccCCCCCCCCCCCc------------------------hHHHHHHHHHHHHHHhhHhcCCC
Q psy16695         23 HLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLAS------------------------SGLDLILKKIYELYADYALKNPF   78 (101)
Q Consensus        23 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~~------------------------~~Ir~~fq~VYeLYVdYVvKNPF   78 (101)
                      .+++.+.--+|.|+|||.+||+    +.+|++.                        +++|.||++||++||||||||||
T Consensus       120 ~~~~Td~y~l~~f~T~TGiKFV----lltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPF  195 (219)
T 3cue_A          120 RQLCTDQFTMFIYQTLTGLKFV----AISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPS  195 (219)
T ss_dssp             CEEEESSCEEEEEECTTSCEEE----EEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             EEEEeCCEEEEEEEcCCCCEEE----EEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            7788888999999999999998    7777776                        88999999999999999999999


Q ss_pred             CCCCCcccchhHHHHHHHHHhh
Q psy16695         79 YSLEMPIRCELFDTHLQNLLQQ  100 (101)
Q Consensus        79 Y~~d~PI~SelFd~~V~~lvrk  100 (101)
                      |.++|||+|++||.+|++++++
T Consensus       196 Y~~~~pI~S~~Fd~~V~~~~~~  217 (219)
T 3cue_A          196 YSMEMPIRSNLFDEKVKKMVEN  217 (219)
T ss_dssp             CCTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCccccHHHHHHHHHHHHh
Confidence            9999999999999999999986

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=99.83  E-value=3.5e-21  Score=140.24  Aligned_cols=78  Identities=18%  Similarity=0.225  Sum_probs=73.0

Q ss_pred             CcchhhhhhcccceeeecccccccCCCCCCCCCCCchHHHHHHHHHHH-HHHhhHhcCC-----CCCCC--------Ccc
Q psy16695         20 DNTHLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYE-LYADYALKNP-----FYSLE--------MPI   85 (101)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~~~~Ir~~fq~VYe-LYVdYVvKNP-----FY~~d--------~PI   85 (101)
                      |.=.+++.+...+|.|+|||.+||+    +.+|++++++|.+|++||+ +|||||+|||     ||.++        |||
T Consensus        65 ~~f~~~~T~~ykl~~~eT~TgiKFv----l~td~~~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~~~~~~~~~~pI  140 (159)
T 3cue_C           65 NDIRSISTGKYRVHTYCTASGLWFV----LLSDFKQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKI  140 (159)
T ss_dssp             CCEEEEECSSCBEEEECCSSCCEEE----EECCSSSSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSCTTTTTSCCCCC
T ss_pred             CCeEEEeeCCEEEEEEEeCCCCEEE----EEeCCCcchHHHHHHHHHHHHHHHHHHhCCCccccccccccccccccCcCc
Confidence            3347788889999999999999999    9999999999999999997 9999999999     99999        999


Q ss_pred             cchhHHHHHHHHHhhC
Q psy16695         86 RCELFDTHLQNLLQQH  101 (101)
Q Consensus        86 ~SelFd~~V~~lvrk~  101 (101)
                      +|++||.+|+++++++
T Consensus       141 ~s~~Fd~~l~~~~~~~  156 (159)
T 3cue_C          141 TNRNFISVLESFLAPM  156 (159)
T ss_dssp             CCHHHHHHHHHHTSCC
T ss_pred             ccHHHHHHHHHHHHhc
Confidence            9999999999999864

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=99.82  E-value=6.9e-21  Score=135.34  Aligned_cols=69  Identities=26%  Similarity=0.443  Sum_probs=63.9

Q ss_pred             hhcccceeeecccccccCCCCCCCCCC-CchHHHHHHHHHHHHHHhhHhcCCCCCCCCcccchhHHHHHHHHHhh
Q psy16695         27 QQEQHRHIDVAPTNYQRSGSNEPGRNL-ASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ  100 (101)
Q Consensus        27 ~~~~~~~~~~~p~~~~~~~~~~~~s~~-~~~~Ir~~fq~VYeLYVdYVvKNPFY~~d~PI~SelFd~~V~~lvrk  100 (101)
                      +++.-+|.|+|||.+||+    +.+|+ +++++|.+|++||++|+|||+ ||||++++||+|++||.+|++++++
T Consensus        69 ~~~y~v~~~~T~tg~Kfv----l~~d~~~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~pI~s~~Fd~~v~~~~~~  138 (142)
T 2j3w_A           69 FNEWFVSAFVTAGHMRFI----MLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKK  138 (142)
T ss_dssp             ETTEEEEEEECTTCCEEE----EEESSCCHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCCCHHHHHHHHHHHHH
T ss_pred             ccceEEEEEEcCCCcEEE----EEeCCCCcHHHHHHHHHHHHHHHHHhc-CCCCCCCCceecHHHHHHHHHHHHH
Confidence            345559999999999999    88998 599999999999999999877 9999999999999999999999986

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}

Probab=98.72  E-value=3.9e-09  Score=78.18  Aligned_cols=60  Identities=12%  Similarity=0.111  Sum_probs=47.9

Q ss_pred             hhhhhhcccceeee-cccccccCCCCCCC--CCCCc--hHHHHHHHHHHHHHHhhHhcCCCCCCCC
Q psy16695         23 HLIQQQEQHRHIDV-APTNYQRSGSNEPG--RNLAS--SGLDLILKKIYELYADYALKNPFYSLEM   83 (101)
Q Consensus        23 ~~~~~~~~~~~~~~-~p~~~~~~~~~~~~--s~~~~--~~Ir~~fq~VYeLYVdYVvKNPFY~~d~   83 (101)
                      .|-.+++.-+.-|+ |+|.+||+--.+..  ++.++  ++||.||++||++|++ ++|||||.++.
T Consensus        70 lL~~~e~~~VYGy~iTnt~vKfVl~~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk-~l~NPFy~~~d  134 (162)
T 3pr6_A           70 SIFQLEGVSVFAMLIKQTGLKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIR-VKCNPLLVSGD  134 (162)
T ss_dssp             EEEEETTEEEEEEECTTTCCEEEEEEEGGGCCCCHHHHHHHHHHHHHHHHHHHH-HHTCTTGGGSC
T ss_pred             eEeecCCeEEEEEEEcCCceEEEEEEccCCcccccchHHHHHHHHHHHHHHHHH-HhcCCCCCCCc
Confidence            56667888888887 99999997322111  24567  8999999999999999 88999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d2j3wa1	140	d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musc	9e-10

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.9 bits (119), Expect = 9e-10
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 56  SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
            G+      +Y+LY  +A+ NPFY    PIR   FD  +Q L ++H
Sbjct: 93  DGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKH 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	99.8

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.2e-20  Score=133.26  Aligned_cols=74  Identities=26%  Similarity=0.434  Sum_probs=66.5

Q ss_pred             hhhhhhcccceeeecccccccCCCCCCCCCCC-chHHHHHHHHHHHHHHhhHhcCCCCCCCCcccchhHHHHHHHHHhhC
Q psy16695         23 HLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLA-SSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH  101 (101)
Q Consensus        23 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~-~~~Ir~~fq~VYeLYVdYVvKNPFY~~d~PI~SelFd~~V~~lvrk~  101 (101)
                      .|-.+.+.-+|.|+|||.+||+    +.++++ ++.++.||+++|++|++||+ ||||.+++||+|++||++|+++++++
T Consensus        63 ~l~~~~~~~v~~y~T~tg~Kfv----l~td~~~~~~i~~~~~~v~~lYv~~v~-NPfy~~~~pI~s~~Fd~~v~~~~~~~  137 (140)
T d2j3wa1          63 TVDKFNEWFVSAFVTAGHMRFI----MLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKH  137 (140)
T ss_dssp             EEEEETTEEEEEEECTTCCEEE----EEESSCCHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred             eEEecCCEEEEEEEcCCCcEEE----EEeCCCcchHHHHHHHHHHHHHHHHhh-CccCCCCCcccCHHHHHHHHHHHHHH
Confidence            4456788999999999999999    888885 55589999999999999887 99999999999999999999999873