Psyllid ID: psy1672

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600
Protein Sequence
MYLVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGGHINGISLALFFLIILILIIIIYLLIRMRTITYPNSKNPAQIEVMANGNAHAVVNKTPSLTPVIETSSFTERKQFPPPSYHSTEMISPNGQLPNKTLHSVINISNPDLINDTRKPEGLSPEPHNDDVLFQNNYWNQNIRQPTNSELGFDSNDKTPIIDGVSIGGELDDNYPPDYGLPIVGQGQNELLPNNIHPNAKTLRVWQRGVPVLPPVNALKRVLSRGSPDEGYQEGSGTDV
Secondary Structure (PSIPRED)
cEEEEHHHHHHccccccccccEEcccccccEEEccccccccccccccccccEEEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccEEcHHHHcccccccccccccccccccccccccccccccEEEccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccEEEEccccEEEcccccEEEEEEEEcccccEEEEEEccEEEccccccccccEEEEEccccccEEEEEEEccccccccEEEEEEEEEcccEEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHEEEEEEEEEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEcccccccccccEEEEEccccEEEEEccccccEcccccccccEEEEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccEEccHHHHHHHHHHHHcccEEcccEEEEcHHHcccEHHHccHHHcccccccccccccccccccccEEEEEEEccccccccEEEEcccEEEcccccccccEEEEEccccEEEEEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEcccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MYLVIVFFVLVVSvsscpstcickwkggkqwmECRDKFLItipeapeseltQVLDmsgnnlqilpKEAFRRAGLLNLQKLFLARChigqidsgaldgltnlieidlsdnlltsipsltfqSVRFLRdlnlarnpiskiekgafqfvpglvkldmsesrlehispeaftgaksLESIklngnrlshfpvrsvePLLKLMMIElhdnpwvcdcnmRSIKMWLadkknvpvqpactgperlsgkvfsdlhaddfackpeirmdSRYVEavssenatvvcrvdsippaaiswywnGRLLLNNTAFSSYQRIFVIEQgeyerksslvltnaqesdsgrfycvaenragiadanfTLQVTyrgvglpflggghiNGISLALFFLIILILIIIIYLLIRMRtitypnsknpaQIEVMANGNAHavvnktpsltpvietssfterkqfpppsyhstemispngqlpnktlhsvinisnpdlindtrkpeglspephnddvlfqnnywnqnirqptnselgfdsndktpiidgvsiggelddnyppdyglpivgqgqnellpnnihpnaktlrvwqrgvpvlppvNALKRVlsrgspdegyqegsgtdv
Flexible Loop (DISEMBL)
MYLVIVFFVLVVsvsscpstcickwkggkqwMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLArnpiskiekgafqfVPGLVKLDMSESRLEHISPEAFTGAKSLESIKlngnrlshfpVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSslvltnaqesdsGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGGHINGISLALFFLIILILIIIIYLLIRMRTITYPNSKNPAQIEVMANGNAHAVVNKTPSLTPVIETSSFTERKQFPPPSYHSTEMISPNGQLPNKTLHSVINISNPDLINDTRKPEGLSPEPHNDDVLFQNNYWNQNIRQPTNSELGFDSNDKTPIIDGVSIGGELDDNYPPDYGLPIVGQGQNELLPNNIHPNAKTLRVWQRGVPVLPPVNALKrvlsrgspdegyqegsgtdv
Low Complexity Region (SEG)
MYlvivffvlvvsvssCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGGHINGislalffliililiiiiylliRMRTITYPNSKNPAQIEVMANGNAHAVVNKTPSLTPVIETSSFTERKQFPPPSYHSTEMISPNGQLPNKTLHSVINISNPDLINDTRKPEGLSPEPHNDDVLFQNNYWNQNIRQPTNSELGFDSNDKTPIIDGVSIGGELDDNYPPDYGLPIVGQGQNELLPNNIHPNAKTLRVWQRGVPVLPPVNALKRVLSRGSPDEGYQEGSGTDV
Disordered region (IsUnstruct)
*YLVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM******************LESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ*SDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGGHINGISLALFFLIILILIIIIYLLIRMRTITYPNS****QIEVMANGNAHAVV************************************************************************VLFQNNYWNQNI***************TPIIDGVSIGGELDDNYPPDYGLPIVGQGQNELLPNNIHPNAKTLRVWQRGVPVLPPVNALKR*******************
Disordered Region (DISOPRED)
MYLVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLL*************VIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGGHINGISLALFFLIILILIIIIYLLIRMRT******************************************************************************I**************************************************************************************************LPPVNALK********************
Disordered Region (DISEMBL)
MYLVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGGHINGISLALFFLIILILIIIIYLLIRMRTITYPNSKNPAQIEVMANGNAHAVVNKTPSLTPVIETSSFTERKQFPPPSYHSTEMISPNGQLPNKTLHSVINISNPDLINDTRKPEGLSPEPHNDDVLFQNNYWNQNIRQPTNSELGFDSNDKTPIIDGVSIGGELDDNYPPDYGLPIVGQGQNELLPNNIHPNAKTLRVWQRGVPVLPPVNALKRVL*****************
Disordered Region (DISPRO)
MYLVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGGHINGISLALFFLIILILIIIIYLLIRMRTI********************************************************P**QLPNKTLHSVINISNPDLINDTRKPEGLSPEPHNDDVLFQNNYWNQNIRQPTNSELGFDSNDKTPIIDGVSIGGELDDNYPPDYGLPIVGQGQNELLPNNIHPNAKTLRVWQRGVPVLPPVNALKRVLSR***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGGHINGISLALFFLIILILIIIIYLLIRMRTITYPNSKNPAQIEVMANGNAHAVVNKTPSLTPVIETSSFTERKQFPPPSYHSTEMISPNGQLPNKTLHSVINISNPDLINDTRKPEGLSPEPHNDDVLFQNNYWNQNIRQPTNSELGFDSNDKTPIIDGVSIGGELDDNYPPDYGLPIVGQGQNELLPNNIHPNAKTLRVWQRGVPVLPPVNALKRVLSRGSPDEGYQEGSGTDV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	600	2.2.26 [Sep-21-2011]
P0C192	709	Leucine-rich repeat-conta	yes	N/A	0.543	0.459	0.266	1e-27
P0CC10	709	Leucine-rich repeat-conta	yes	N/A	0.543	0.459	0.266	1e-27
Q9HCJ2	640	Leucine-rich repeat-conta	yes	N/A	0.545	0.510	0.268	1e-27
Q8C031	640	Leucine-rich repeat-conta	no	N/A	0.545	0.510	0.268	2e-27
Q9NT99	713	Leucine-rich repeat-conta	no	N/A	0.543	0.457	0.266	4e-27
O75093	1534	Slit homolog 1 protein OS	no	N/A	0.486	0.190	0.288	1e-26
O88279	1531	Slit homolog 1 protein OS	no	N/A	0.486	0.190	0.282	3e-26
Q80TR4	1531	Slit homolog 1 protein OS	no	N/A	0.486	0.190	0.282	3e-26
A6NDA9	550	Leucine-rich repeat, immu	no	N/A	0.548	0.598	0.280	3e-25
Q9VZZ4	1527	Peroxidasin OS=Drosophila	no	N/A	0.471	0.185	0.270	4e-25

>sp|P0C192|LRC4B_MOUSE Leucine-rich repeat-containing protein 4B OS=Mus musculus GN=Lrrc4b PE=1 SV=1

 Score =  125 bits (313), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 179/416 (43%), Gaps = 90/416 (21%)

Query: 14  VSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAG 73
            +SCP+ C C  +  +  + C  + L  +P +     T+ L++  N++Q++  + F+   
Sbjct: 56  ATSCPAACSCSNQASR--VICTRRELAEVPASIPVN-TRYLNLQENSIQVIRTDTFKH-- 110

Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           L +L+ L L++  + +I+ GA +GL +L  ++L DN LT++P+  F+ +  LR+L L  N
Sbjct: 111 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 170

Query: 134 PISKIEKGAFQFVPGLVKLDMSE-SRLEHISPEAFTGAKS-------------------- 172
           PI  I   AF  VP L +LD+ E  RLE+IS  AF G  +                    
Sbjct: 171 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 230

Query: 173 --LESIKLNGNRLS-------------------HFPVRSVE------------------- 192
             LE ++L+GNRL                    H  V ++E                   
Sbjct: 231 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNN 290

Query: 193 ----------PLLKLMMIELHDNPWVCDCNMRSIKMWLADK--KNVPVQPACTGPERLSG 240
                     PL +L  + L+ NPW C+C++  +  WL +    N      C  P  L G
Sbjct: 291 LMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKG 350

Query: 241 KVFSDLHADDFAC-KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW-NGRLLLNN 298
           +   +L    F C  P I      +       A + CR  +    +++W   NG L+   
Sbjct: 351 RYIGELDQSHFTCYAPVIVEPPTDLNVTEGMAAELKCRTGT-SMTSVNWLTPNGTLM--- 406

Query: 299 TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           T  S   RI V+  G      +L  TN    D+G++ C+  N AG   A+ TL V+
Sbjct: 407 THGSYRVRISVLHDG------TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVS 456

Synaptic adhesion protein. Regulates the formation of excitatory synapses. The trans-synaptic adhesion between LRRC4B and PTPRF regulates the formation of excitatory synapses in a bidirectional manner.
Mus musculus (taxid: 10090)

>sp|P0CC10|LRC4B_RAT Leucine-rich repeat-containing protein 4B OS=Rattus norvegicus GN=Lrrc4b PE=1 SV=1

 Score =  125 bits (313), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 179/416 (43%), Gaps = 90/416 (21%)

Query: 14  VSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAG 73
            +SCP+ C C  +  +  + C  + L  +P +     T+ L++  N++Q++  + F+   
Sbjct: 56  ATSCPAACSCSNQASR--VICTRRELAEVPASIPVN-TRYLNLQENSIQVIRTDTFKH-- 110

Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           L +L+ L L++  + +I+ GA +GL +L  ++L DN LT++P+  F+ +  LR+L L  N
Sbjct: 111 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 170

Query: 134 PISKIEKGAFQFVPGLVKLDMSE-SRLEHISPEAFTGAKS-------------------- 172
           PI  I   AF  VP L +LD+ E  RLE+IS  AF G  +                    
Sbjct: 171 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 230

Query: 173 --LESIKLNGNRLS-------------------HFPVRSVE------------------- 192
             LE ++L+GNRL                    H  V ++E                   
Sbjct: 231 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNN 290

Query: 193 ----------PLLKLMMIELHDNPWVCDCNMRSIKMWLADK--KNVPVQPACTGPERLSG 240
                     PL +L  + L+ NPW C+C++  +  WL +    N      C  P  L G
Sbjct: 291 LMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKG 350

Query: 241 KVFSDLHADDFAC-KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW-NGRLLLNN 298
           +   +L    F C  P I      +       A + CR  +    +++W   NG L+   
Sbjct: 351 RYIGELDQSHFTCYAPVIVEPPTDLNVTEGMAAELKCRTGT-SMTSVNWLTPNGTLM--- 406

Query: 299 TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           T  S   RI V+  G      +L  TN    D+G++ C+  N AG   A+ TL V+
Sbjct: 407 THGSYRVRISVLHDG------TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVS 456

Synaptic adhesion protein. Regulates the formation of excitatory synapses. The trans-synaptic adhesion between LRRC4B and PTPRF regulates the formation of excitatory synapses in a bidirectional manner.

Rattus norvegicus (taxid: 10116)

>sp|Q9HCJ2|LRC4C_HUMAN Leucine-rich repeat-containing protein 4C OS=Homo sapiens GN=LRRC4C PE=1 SV=1

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 174/421 (41%), Gaps = 94/421 (22%)

Query: 11  VVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFR 70
           +V   +CPS C C  +  K  + C  K L  +P+   +  T++L++  N +QI+   +F+
Sbjct: 41  LVRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTN-TRLLNLHENQIQIIKVNSFK 97

Query: 71  RAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLT------------------ 112
              L +L+ L L+R HI  I+ GA +GL NL  ++L DN LT                  
Sbjct: 98  H--LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 155

Query: 113 ------SIPSLTFQSVRFLR---------------------------------------- 126
                 SIPS  F  +  LR                                        
Sbjct: 156 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL 215

Query: 127 -------DLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLN 179
                  +L+L+ N +S I  G+FQ +  L KL M +S+++ I   AF   +SL  I L 
Sbjct: 216 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 275

Query: 180 GNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADK--KNVPVQPACTGPER 237
            N L+  P     PL  L  I LH NPW C+C++  +  W+ D    N      C  P  
Sbjct: 276 HNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPN 335

Query: 238 LSGKVFSDLHADDFACKPEIRM----DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGR 293
           L G+   +L  + F C   + +    D    E +++E   + CR  S    ++SW     
Sbjct: 336 LKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAE---LKCRA-STSLTSVSWITPNG 391

Query: 294 LLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
            ++ + A+    RI V+  G      +L  TN    D+G + C+  N  G   A+ TL V
Sbjct: 392 TVMTHGAYKV--RIAVLSDG------TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 443

Query: 354 T 354
           T
Sbjct: 444 T 444

May promote neurite outgrowth of developing thalamic neurons.

Homo sapiens (taxid: 9606)

>sp|Q8C031|LRC4C_MOUSE Leucine-rich repeat-containing protein 4C OS=Mus musculus GN=Lrrc4c PE=1 SV=2

 Score =  124 bits (311), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 174/421 (41%), Gaps = 94/421 (22%)

Query: 11  VVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFR 70
           +V   +CPS C C  +  K  + C  K L  +P+   +  T++L++  N +QI+   +F+
Sbjct: 41  LVRAQTCPSVCSCSNQFSK--VICVRKNLREVPDGISTN-TRLLNLHENQIQIIKVNSFK 97

Query: 71  RAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLT------------------ 112
              L +L+ L L+R HI  I+ GA +GL NL  ++L DN LT                  
Sbjct: 98  H--LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 155

Query: 113 ------SIPSLTFQSVRFLR---------------------------------------- 126
                 SIPS  F  +  LR                                        
Sbjct: 156 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL 215

Query: 127 -------DLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLN 179
                  +L+L+ N +S I  G+FQ +  L KL M +S+++ I   AF   +SL  I L 
Sbjct: 216 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 275

Query: 180 GNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADK--KNVPVQPACTGPER 237
            N L+  P     PL  L  I LH NPW C+C++  +  W+ D    N      C  P  
Sbjct: 276 HNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIRDMAPSNTACCARCNTPPN 335

Query: 238 LSGKVFSDLHADDFACKPEIRM----DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGR 293
           L G+   +L  + F C   + +    D    E +++E   + CR  S    ++SW     
Sbjct: 336 LKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAE---LKCRA-STSLTSVSWITPNG 391

Query: 294 LLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
            ++ + A+    RI V+  G      +L  TN    D+G + C+  N  G   A+ TL V
Sbjct: 392 TVMTHGAYKV--RIAVLSDG------TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 443

Query: 354 T 354
           T
Sbjct: 444 T 444

May promote neurite outgrowth of developing thalamic neurons.

Mus musculus (taxid: 10090)

>sp|Q9NT99|LRC4B_HUMAN Leucine-rich repeat-containing protein 4B OS=Homo sapiens GN=LRRC4B PE=2 SV=3

 Score =  123 bits (308), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 177/416 (42%), Gaps = 90/416 (21%)

Query: 14  VSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAG 73
            +SCP  C C  +  +  + C  + L  +P +     T+ L++  N +Q++  + F+   
Sbjct: 54  ATSCPVACSCSNQASR--VICTRRDLAEVPASIPVN-TRYLNLQENGIQVIRTDTFKH-- 108

Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           L +L+ L L++  + +I+ GA +GL +L  ++L DN LT++P+  F+ +  LR+L L  N
Sbjct: 109 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 168

Query: 134 PISKIEKGAFQFVPGLVKLDMSE-SRLEHISPEAFTGAKS-------------------- 172
           PI  I   AF  VP L +LD+ E  RLE+IS  AF G  +                    
Sbjct: 169 PIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTAL 228

Query: 173 --LESIKLNGNRLS-------------------HFPVRSVE------------------- 192
             LE ++L+GNRL                    H  V ++E                   
Sbjct: 229 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNN 288

Query: 193 ----------PLLKLMMIELHDNPWVCDCNMRSIKMWLADK--KNVPVQPACTGPERLSG 240
                     PL +L  + L+ NPW C+C++  +  WL +    N      C  P  L G
Sbjct: 289 LMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKG 348

Query: 241 KVFSDLHADDFAC-KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW-NGRLLLNN 298
           +   +L    F C  P I      +       A + CR  +    +++W   NG L+   
Sbjct: 349 RYIGELDQSHFTCYAPVIVEPPTDLNVTEGMAAELKCRTGT-SMTSVNWLTPNGTLM--- 404

Query: 299 TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           T  S   RI V+  G      +L  TN    D+G++ C+  N AG   A+ TL V+
Sbjct: 405 THGSYRVRISVLHDG------TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVS 454

Synaptic adhesion protein. Regulates the formation of excitatory synapses. The trans-synaptic adhesion between LRRC4B and PTPRF regulates the formation of excitatory synapses in a bidirectional manner.

Homo sapiens (taxid: 9606)

>sp|O75093|SLIT1_HUMAN Slit homolog 1 protein OS=Homo sapiens GN=SLIT1 PE=2 SV=4

 Score =  121 bits (304), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 149/319 (46%), Gaps = 27/319 (8%)

Query: 12  VSVSSCPSTCICKWKGGKQWMECRDKFLITIPE-APESELTQVLDMSGNNLQILPKEAFR 70
           +  S+CP+ C C        ++C    L  IP+  P +  T+ L+++GNN+  + K  F 
Sbjct: 29  LGASACPALCTCTGT----TVDCHGTGLQAIPKNIPRN--TERLELNGNNITRIHKNDF- 81

Query: 71  RAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL 130
            AGL  L+ L L    IG ++ GA D +  L  + L+ N L  +P L FQ+ + L  L+L
Sbjct: 82  -AGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLHMLPELLFQNNQALSRLDL 140

Query: 131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRS 190
           + N I  I + AF+    L  L + ++++  I   AF   + LE + LN N ++  PV S
Sbjct: 141 SENAIQAIPRKAFRGATDLKNLQLDKNQISCIEEGAFRALRGLEVLTLNNNNITTIPVSS 200

Query: 191 VEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADD 250
              + KL    LH N   CDC++  +  WL  +  + +   C+GP  L G   +++   +
Sbjct: 201 FNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPASLRGLNVAEVQKSE 260

Query: 251 FACK--------PEIRMDSRYVEAV-SSENATVVCR---VDSIPPAAISWYWNGRLLLNN 298
           F+C         P   + S    A+ +  N  V CR   + +IP          RL LN 
Sbjct: 261 FSCSGQGEAGRVPTCTLSSGSCPAMCTCSNGIVDCRGKGLTAIPANLPETMTEIRLELNG 320

Query: 299 T------AFSSYQRIFVIE 311
                  AFS Y+++  I+
Sbjct: 321 IKSIPPGAFSPYRKLRRID 339

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions (By similarity). SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Homo sapiens (taxid: 9606)

>sp|O88279|SLIT1_RAT Slit homolog 1 protein OS=Rattus norvegicus GN=Slit1 PE=1 SV=1

 Score =  120 bits (301), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 149/319 (46%), Gaps = 27/319 (8%)

Query: 12  VSVSSCPSTCICKWKGGKQWMECRDKFLITIPE-APESELTQVLDMSGNNLQILPKEAFR 70
           +  ++CP+ C C        ++C    L  IP+  P +  T+ L+++GNN+  + K  F 
Sbjct: 29  LGATACPALCTCTGT----TVDCHGTGLQAIPKNIPRN--TERLELNGNNITRIHKNDF- 81

Query: 71  RAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL 130
            AGL  L+ L L    IG ++ GA D +  L  + L+ N L  +P L FQ+ + L  L+L
Sbjct: 82  -AGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLQVLPELLFQNNQALSRLDL 140

Query: 131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRS 190
           + N +  + + AF+    L  L + ++++  I   AF   + LE + LN N ++  PV S
Sbjct: 141 SENSLQAVPRKAFRGATDLKNLQLDKNQISCIEEGAFRALRGLEVLTLNNNNITTIPVSS 200

Query: 191 VEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADD 250
              + KL    LH N   CDC++  +  WL  +  + +   C+GP  L G   +++   +
Sbjct: 201 FNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPASLRGLNVAEVQKSE 260

Query: 251 FACK--------PEIRMDSRYVEAV-SSENATVVCR---VDSIPPAAISWYWNGRLLLNN 298
           F+C         P   + S    A+ S  N  V CR   + +IP          RL LN 
Sbjct: 261 FSCSGQGEAAQVPACTLSSGSCPAMCSCSNGIVDCRGKGLTAIPANLPETMTEIRLELNG 320

Query: 299 T------AFSSYQRIFVIE 311
                  AFS Y+++  I+
Sbjct: 321 IKSIPPGAFSPYRKLRRID 339

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Rattus norvegicus (taxid: 10116)

>sp|Q80TR4|SLIT1_MOUSE Slit homolog 1 protein OS=Mus musculus GN=Slit1 PE=1 SV=2

 Score =  120 bits (301), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 151/319 (47%), Gaps = 27/319 (8%)

Query: 12  VSVSSCPSTCICKWKGGKQWMECRDKFLITIPE-APESELTQVLDMSGNNLQILPKEAFR 70
           +  ++CP+ C C        ++C    L  IP+  P +  T+ L+++GNN+  + K  F 
Sbjct: 29  LGATACPALCTCTGT----TVDCHGTGLQAIPKNIPRN--TERLELNGNNITRIHKNDF- 81

Query: 71  RAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL 130
            AGL  L+ L L    IG ++ GA D +  L  + L+ N L  +P L FQ+ + L  L+L
Sbjct: 82  -AGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLQVLPELLFQNNQALSRLDL 140

Query: 131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRS 190
           + N +  + + AF+    L  L + ++R+  I   AF   + LE + LN N ++  PV S
Sbjct: 141 SENFLQAVPRKAFRGATDLKNLQLDKNRISCIEEGAFRALRGLEVLTLNNNNITTIPVSS 200

Query: 191 VEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADD 250
              + KL    LH N   CDC++  +  WL  +  + +   C+GP  L G   +++   +
Sbjct: 201 FNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPASLRGLNVAEVQKGE 260

Query: 251 FACK--------PEIRMDSRYVEAVSSENATVV-CR---VDSIPPAAISWYWNGRLLLNN 298
           F+C         P   + S    A+ S ++ +V CR   + +IP          RL LN 
Sbjct: 261 FSCSGQGEAAGAPACTLSSGSCPAMCSCSSGIVDCRGKGLTAIPANLPETMTEIRLELNG 320

Query: 299 T------AFSSYQRIFVIE 311
                  AFS Y+++  I+
Sbjct: 321 IKSIPPGAFSPYRKLRRID 339

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions (By similarity). SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Mus musculus (taxid: 10090)

>sp|A6NDA9|LRIT2_HUMAN Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2 OS=Homo sapiens GN=LRIT2 PE=2 SV=1

 Score =  117 bits (292), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 160/357 (44%), Gaps = 28/357 (7%)

Query: 3   LVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQ 62
           LV+VF     +   C   C C  +   + ++C    L  IP     E  QV  +  + L 
Sbjct: 10  LVLVFLDTHAAQPFCLPGCTCSEESFGRTLQCTSVSLGKIPGNLSEEFKQV-RIENSPLF 68

Query: 63  ILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSV 122
            +P+ +F    +  L+ L+L   +I  I  GAL+ L  L E+ L  N L S+P   F++ 
Sbjct: 69  EMPQGSF--INMSTLEYLWLNFNNISVIHLGALEHLPELRELRLEGNKLCSVPWTAFRAT 126

Query: 123 RFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNR 182
             LR L+L RN I  + + A QF+  L  LD+S +RL  +S   F    + +  +     
Sbjct: 127 PLLRVLDLKRNKIDALPELALQFLVSLTYLDLSSNRLTVVSKSVFLNWPAYQKCRQ---- 182

Query: 183 LSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPV-----QPACTGPER 237
               P    E +L  +++ LHDNPWVCDC +R +  ++     +PV        C GP  
Sbjct: 183 ----PDCGAE-ILSSLVVALHDNPWVCDCRLRGLVQFV-KSITLPVILVNSYLICQGPLS 236

Query: 238 LSGKVFSDLHADDFAC-KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLL 296
            +G++F +      AC KP+I   S  +   + +N T+ C   + P  +I+W +   +  
Sbjct: 237 KAGQLFHETELS--ACMKPQISTPSANITIRAGQNVTLRCLAQASPSPSIAWTYPLSMWR 294

Query: 297 NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                +S         GE    S L +  A   DSG + C+A N  G ++   +L V
Sbjct: 295 EFDVLTS-------STGEDTALSELAIPAAHLVDSGNYTCMASNSIGKSNLVISLHV 344

Homo sapiens (taxid: 9606)

>sp|Q9VZZ4|PXDN_DROME Peroxidasin OS=Drosophila melanogaster GN=Pxn PE=1 SV=1

 Score =  117 bits (292), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 154/333 (46%), Gaps = 50/333 (15%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
           CP+ C C     ++ + C    L  +P+ P+   TQ LD+  N+++ LP  AF  +GL  
Sbjct: 26  CPAGCTCL----ERTVRCIRAKLSAVPKLPQD--TQTLDLRFNHIEELPANAF--SGLAQ 77

Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
           L  LFL    +  +  GAL+GLT L  + L++N L+ +P+  FQ +  L  + L  N I 
Sbjct: 78  LTTLFLNDNELAYLQDGALNGLTALRFVYLNNNRLSRLPATIFQRMPRLEAIFLENNDIW 137

Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
           ++  G F  +P L +L M  ++L  +  + F    +L+ ++L+GN +             
Sbjct: 138 QLPAGLFDNLPRLNRLIMYNNKLTQLPVDGFNRLNNLKRLRLDGNAID------------ 185

Query: 197 LMMIELHDNPWVCDCNMRSI-KMWLAD--KKNVPVQPACTGPERLSGKVFSDLHADDFAC 253
                       C+C + S+ + W  D  ++ V +   C  P+ L  + FS L    F C
Sbjct: 186 ------------CNCGVYSLWRRWHLDVQRQLVSISLTCAAPQMLQNQGFSSLGEHHFKC 233

Query: 254 -KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
            KP+  +  +  +  + E   + C V  +P   I+W       ++NT     Q + + EQ
Sbjct: 234 AKPQFLVAPQDAQVAAGEQVELSCEVTGLPRPQITW-------MHNT-----QELGLEEQ 281

Query: 313 GEYE--RKSSLVLTNAQESDSGRFYCVAENRAG 343
            + E     SL++ +A  SD G + C+A N  G
Sbjct: 282 AQAEILPSGSLLIRSADTSDMGIYQCIARNEMG 314

Plays a role in extracellular matrix consolidation, phagocytosis and defense.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	600
91081765	605	PREDICTED: similar to kek1 [Tribolium ca	0.936	0.928	0.536	1e-157
383858349	627	PREDICTED: leucine-rich repeat-containin	0.946	0.905	0.441	1e-133
380012878	612	PREDICTED: leucine-rich repeat-containin	0.945	0.926	0.434	1e-133
307168694	635	Leucine-rich repeat, immunoglobulin-like	0.958	0.905	0.439	1e-133
193700114	669	PREDICTED: leucine-rich repeat-containin	0.95	0.852	0.416	1e-132
66499167	630	PREDICTED: leucine-rich repeat-containin	0.95	0.904	0.429	1e-131
340728941	626	PREDICTED: peroxidasin homolog [Bombus t	0.945	0.905	0.434	1e-131
307206922	613	Leucine-rich repeat-containing protein 4	0.956	0.936	0.448	1e-130
350412265	627	PREDICTED: peroxidasin homolog [Bombus i	0.945	0.904	0.428	1e-130
170061371	777	kek1 [Culex quinquefasciatus] gi|1678796	0.765	0.590	0.506	1e-121

>gi|91081765|ref|XP_973226.1| PREDICTED: similar to kek1 [Tribolium castaneum] gi|270006351|gb|EFA02799.1| kekkon-1 [Tribolium castaneum]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 327/609 (53%), Positives = 407/609 (66%), Gaps = 47/609 (7%)

Query: 16  SCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLL 75
           +CPS C CKWKGGKQ +EC ++ LITIPE+ + E TQVLD+SGNNLQILP+E F R+GLL
Sbjct: 20  NCPSPCTCKWKGGKQTVECTERGLITIPESVDPE-TQVLDLSGNNLQILPRETFVRSGLL 78

Query: 76  NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
           NLQ++FL RC IGQID  A  GLTNLIE+DLS NLLT++PS TF+ V FLRDL LA NPI
Sbjct: 79  NLQRVFLRRCRIGQIDDLAFRGLTNLIELDLSHNLLTAVPSGTFRDVPFLRDLVLAYNPI 138

Query: 136 SKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL 195
            KI+  AF+ +PGL+KLD+S   ++ I+ +AF G + LES+KLNGNRLS   +R+VE L 
Sbjct: 139 QKIDSQAFKTIPGLIKLDLSNCEIQVIASKAFEGIEMLESLKLNGNRLSELRLRTVETLN 198

Query: 196 KLMMIELHDNPWVCDCNMRSIKMWLADKK-NVPVQPACTG-PERLSGKVFSDLHADDFAC 253
           +L  IE+HDNPW CDC +R++K WL +     P+ P C+G PERL  K F++LH DDFAC
Sbjct: 199 RLHGIEMHDNPWHCDCRLRAVKEWLVNNNIPYPISPICSGGPERLIDKTFTELHIDDFAC 258

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           KPEI   +RY+EA S  NAT++CR ++IP A I+WYWNGR LLNN+AFSS+QRI V E+G
Sbjct: 259 KPEILPVNRYIEATSGSNATILCRANAIPVANINWYWNGRPLLNNSAFSSHQRIHVFEEG 318

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGGHINGISL 373
           + E++S LVLTN QE +S  FYCVAENRAG A+ANFTL V+ R  G+  LG G I G+S+
Sbjct: 319 KQEKRSVLVLTNVQEINSSEFYCVAENRAGNAEANFTLHVSMRAAGITTLGSGQIAGLSV 378

Query: 374 ALFFLIILILIIIIYLLIRMRTITYPNSKNPAQIEVMANGNAHAVVNKTPSLTPVIETS- 432
           AL  LII IL++I  LL+R+R I +  SK   QIEV+   N  + V + PS      T  
Sbjct: 379 ALIILIIFILLVIFVLLVRLRRIPFSESKTSGQIEVVTVVNGTSKVEE-PSHEHTKPTEL 437

Query: 433 SFTERKQFPPPSYHST----EMISPNGQLPNKTLHSVINISNPDLINDTR---KPEGL-- 483
           +F    Q PP    ST      +SP+    N          NPDLINDT+    PEGL  
Sbjct: 438 NFCNPVQKPPRLSDSTIPASCFVSPSSASGN----------NPDLINDTKPSEDPEGLER 487

Query: 484 ---SPEPHNDDVLFQNNYWNQNIRQPTNSELGFDSNDKTPIIDGVSIGGELDD------N 534
                   N D L+ +  W  +  +  N       +DKTPI+DG+S GG L++       
Sbjct: 488 PASGEYSRNADSLYPSGLWETDYSRQVNF-----YDDKTPIMDGMSGGGSLEELAFRAQG 542

Query: 535 YPPDYGLPIVGQGQNELLPNNIHPNAKTLRVWQR-GVPVLPPVNALKRVL--SRGSPDEG 591
           YP DYGLPI  + Q   LP     NAKTLRVWQ+ GVPVLPPV ALKR L  SR SPDEG
Sbjct: 543 YPADYGLPIADKQQT--LPT----NAKTLRVWQKGGVPVLPPVTALKRALTHSRNSPDEG 596

Query: 592 YQEGSGTDV 600
           YQEG GTDV
Sbjct: 597 YQEGCGTDV 605

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858349|ref|XP_003704664.1| PREDICTED: leucine-rich repeat-containing protein 4-like [Megachile rotundata]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 287/650 (44%), Positives = 377/650 (58%), Gaps = 82/650 (12%)

Query: 3   LVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQ 62
           L +  F+ +V+   C   C CKWK GK+ +EC ++ L +IPE  + E TQVLD SGN+++
Sbjct: 8   LYVTTFLGIVTSDKCADECSCKWKSGKRTVECINRALTSIPEWVDPE-TQVLDTSGNDIR 66

Query: 63  ILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSV 122
            LP   F R  L NLQ+L+L  C I +IDS AL GLTNL+E+DLS NLLT +PS +F   
Sbjct: 67  TLPSNIFVRVRLTNLQRLYLRECRIDRIDSEALAGLTNLVELDLSHNLLTVVPSASFTDT 126

Query: 123 RFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNR 182
            FLRDL L+ NP+ +I   AF+  P LVKLD+S ++L  I  + F G + LES+KLN N+
Sbjct: 127 PFLRDLVLSNNPLKRIHSHAFKSTPNLVKLDLSNTQLVEIESKGFRGLELLESLKLNNNQ 186

Query: 183 LSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPV--QPACTGPERLSG 240
           LS     + EPL KL  IELHDNPW+CDC++R +KMWL  K N+P    P C GP+ L  
Sbjct: 187 LSTLHPGTFEPLNKLTSIELHDNPWICDCHLREMKMWLV-KHNLPTLQAPICHGPKPLLN 245

Query: 241 KVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTA 300
           + F+DL  DDFAC+P + + SRY EA   ENA++VCRV +IPPA + WYWNGRLL N++A
Sbjct: 246 RTFTDLGIDDFACRPILLIASRYAEATIGENASIVCRVSAIPPAKVKWYWNGRLLTNHSA 305

Query: 301 FSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGL 360
           FSSYQ+I + E+G++ ++S+LVLTNAQESDS  FYCVAENRAG  +ANFTL V+ R  G+
Sbjct: 306 FSSYQKILIFEEGQFRKRSTLVLTNAQESDSSEFYCVAENRAGSVEANFTLHVSLRTAGM 365

Query: 361 PFLGGGHINGISLALFFLIILILIIIIYLLIRMRTITYPNSKNPAQIEVMANGNAHAVVN 420
             LG G I GIS AL  LI+ IL+II+ L IR R +   + K+    E  +  N     +
Sbjct: 366 STLGSGQIAGISAALVVLILFILLIILVLFIRFRKMPLKDVKSAVPAEGASADNTGGNND 425

Query: 421 KTPSLTPV-------IETSSF--------------TERKQ---------------FPPPS 444
             PS T         IET+SF               +R Q               F   S
Sbjct: 426 NPPSATSTTRRKHEEIETTSFGVDSKPPVSLNLSYVQRPQAATLQTENEYGSISRFDDQS 485

Query: 445 YHSTEMISPNGQLPNKTLHSVINISNPDLINDTRKPEGLSPEPHN----------DD--V 492
              + M++P+    + T  S++ I NPDLI DTR+       P+           DD  +
Sbjct: 486 QQPSVMVAPSACFSSTT--SLMPIDNPDLIRDTRRGSAEDITPYGGADYSRMEVVDDAKI 543

Query: 493 LFQNNYWNQNIRQPTNSELGFDSNDKTPIIDGVSIGGELDDNYPPDYGLPIVGQGQNELL 552
           L+ +  W              D+ D       VS        YP    L +V       +
Sbjct: 544 LYSSCLW--------------DARDTCRTAVPVS-------TYPSKEALAVVAP-----M 577

Query: 553 PNNIHPNAKTLRVWQRGVPVLPPVNALKRVL--SRGSPDEGYQEGSGTDV 600
                P AK +RVWQ+GVPVLPPV+ALKRVL  +R SPDEGYQEG+GTDV
Sbjct: 578 VEQFPPGAKQIRVWQKGVPVLPPVSALKRVLGSTRSSPDEGYQEGTGTDV 627

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012878|ref|XP_003690501.1| PREDICTED: leucine-rich repeat-containing protein 4B-like [Apis florea]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 278/640 (43%), Positives = 376/640 (58%), Gaps = 73/640 (11%)

Query: 1   MYLVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNN 60
            +L +   + +V+   C   C CKWK GK+ +EC ++ L +IPE  + E TQVLD SGN+
Sbjct: 6   FFLYVTTLLGIVTSDKCAVECSCKWKSGKRTVECVNRALTSIPEWVDPE-TQVLDTSGND 64

Query: 61  LQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQ 120
           ++ LP   F R  L NLQ+L+L  C I +IDS AL GLTNL+E+DLS NLLT +P+ +F 
Sbjct: 65  IRTLPSNIFVRVRLTNLQRLYLRECRIDRIDSEALAGLTNLVELDLSHNLLTVVPTASFL 124

Query: 121 SVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNG 180
              FLRDL L+ NP+ ++   AF+  P LVKLD+S ++L  I  + F G + LES+KLN 
Sbjct: 125 DTPFLRDLVLSYNPLKRVHSHAFKSTPNLVKLDLSHTQLVEIEAKGFRGLELLESLKLNN 184

Query: 181 NRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPV--QPACTGPERL 238
           N+LS     + EPL KL  IELHDNPW+CDC++R +KMWL  K N+P    P C GP++L
Sbjct: 185 NQLSTLHPGTFEPLNKLTSIELHDNPWICDCHLREMKMWLV-KHNLPTLQAPLCHGPKQL 243

Query: 239 SGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNN 298
             + F+DL  DDFAC+P + + SRY EA   ENA++VC+V +IPPA + WYWNGRLL N+
Sbjct: 244 MNRTFTDLGIDDFACRPILLIASRYAEATIGENASIVCKVSAIPPAKVKWYWNGRLLTNH 303

Query: 299 TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
           +AFSSYQ+I + E G++ ++S+LVLTNAQE+DS  FYCVAENRAG  +ANFTL V+ R  
Sbjct: 304 SAFSSYQKILIFEDGQFRKRSTLVLTNAQEADSSEFYCVAENRAGTVEANFTLHVSLRTA 363

Query: 359 GLPFLGGGHINGISLALFFLIILILIIIIYLLIRMRTITYPNSKNPAQIEVMAN------ 412
           G+  LG GHI GIS AL  LI+ IL++I+ L +R R +   + K+    E  +       
Sbjct: 364 GMSTLGSGHIAGISAALVVLILFILLVILVLFVRFRRMPLKDVKSAVPAEATSTTRRKHE 423

Query: 413 ---GNAHAVVNKTPSLTPVIETSSFTERKQ---------------FPPPSYHSTEMISPN 454
                +  V +K P   PV  T S+ +R Q               F   S   + M++P 
Sbjct: 424 EIETTSFGVESKPP---PVSLTLSYVQRPQAAVLQTENEYGSIGRFDDQSQQPSVMVAPG 480

Query: 455 GQLPNKTLHSVINISNPDLINDTRKPEGLSPEPHN----------DD--VLFQNNYWNQN 502
               + T  S++ I NPDLI DTR+       P+           DD  +L+ +  W   
Sbjct: 481 ACFSSTT--SLMPIDNPDLIRDTRRGSAEDITPYGGADYSRMEVVDDAKILYSSCMW--- 535

Query: 503 IRQPTNSELGFDSNDKTPIIDGVSIGGELDDNYPPDYGLPIVGQGQNELLPNNIHPNAKT 562
                      ++ D       VS        YP    L +V       +     P AK 
Sbjct: 536 -----------EARDTCRTTVPVS-------TYPSKETLAVVAP-----MVEQFPPGAKQ 572

Query: 563 LRVWQRGVPVLPPVNALKRVL--SRGSPDEGYQEGSGTDV 600
           +RVWQ+GVPVLPPV+ALKRVL  +R SPDEGYQEG+GTDV
Sbjct: 573 IRVWQKGVPVLPPVSALKRVLGSTRSSPDEGYQEGTGTDV 612

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168694|gb|EFN61726.1| Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2 [Camponotus floridanus]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 288/656 (43%), Positives = 383/656 (58%), Gaps = 81/656 (12%)

Query: 1   MYLVIVFFVLVVSVS--SCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSG 58
           ++L+    VL V+ S   C + C CKWK GK+ +EC D+ L +IP+  + E TQVLDMS 
Sbjct: 5   VFLLYAVTVLGVTASGDKCANQCSCKWKSGKRTVECVDRSLTSIPDGIDPE-TQVLDMSN 63

Query: 59  NNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLT 118
           N++++L    F    L NLQ+L+L  CHI QID  AL GLTNL+E+DLS N LT++PS +
Sbjct: 64  NDIRLLRSNLFIHVQLTNLQRLYLRECHIDQIDDEALAGLTNLVELDLSRNRLTAVPSSS 123

Query: 119 FQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKL 178
           F    FLRDL LA NP+ KI   AF+  P LVKLD+S ++L  I  +   G + LES+KL
Sbjct: 124 FTDTPFLRDLVLAYNPLEKIHLHAFKSTPNLVKLDLSYTQLVEIESKGLIGLELLESLKL 183

Query: 179 NGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVP--VQPACTGPE 236
           N N+LS     + +PL KL  IELHDNPW CDC++R +K+WL  K NVP  V P C GP 
Sbjct: 184 NNNQLSTLHPGTFDPLKKLTSIELHDNPWTCDCHLREMKIWLV-KHNVPTLVAPVCHGPH 242

Query: 237 RLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLL 296
           +L  + F+DL  DDFAC+P + + SRY EA   ENA++VCRV +IPPA + WYWN RLL 
Sbjct: 243 QLLERAFTDLDIDDFACRPVLLIASRYAEATIGENASIVCRVSAIPPAKVKWYWNNRLLT 302

Query: 297 NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
           N +AFSSYQ+I + E+G++ ++S+LVLTNAQE+DS  FYCVAENRAG  +ANFTL V+ R
Sbjct: 303 NQSAFSSYQKILIFEEGQFRKRSTLVLTNAQEADSSEFYCVAENRAGSVEANFTLHVSLR 362

Query: 357 GVGLPFLGGGHINGISLALFFLIILILIIIIYLLIRMRTITYPNSKNPAQIEVMA---NG 413
             G+  LG G I GIS AL  LI++IL+II+ L +R+R +   + K+ A +E  +    G
Sbjct: 363 TAGMSTLGSGQIAGISAALVVLILIILLIILVLFVRLRRMPLKDVKSSAPMETTSGDGTG 422

Query: 414 NAHAVVNKTPSLTPV-------IETSSFTERKQFPPPSYHSTEMISPNGQLPNKTLHSVI 466
           N  A  N   S T         IET+SF    + PP S H + +  P   +  +T +S I
Sbjct: 423 NGSAGDNNPSSATLTTRRKHEEIETTSFALESK-PPASLHLSYVQRPQAAVVQETEYSTI 481

Query: 467 N---------------------------ISNPDLINDTRKPEGLSPEPHN---------- 489
           +                           I NPDLI DTR+        +           
Sbjct: 482 SRFDDQNQSAVAAIPGAGCFSSTTSLMPIDNPDLIRDTRRGSAEDIASYGVADYSRVGTM 541

Query: 490 DD---VLFQNNYWNQNIRQPTNSELGFDSNDKTPIIDGVSIGGELDDNYPPDYGLPIVGQ 546
           DD   +L+ +  W     +  ++  G  S    P+            +YP    L +V  
Sbjct: 542 DDAGKMLYSSCLW-----EARDTTCGRTS--AVPV-----------SSYPSKDQLAVVAA 583

Query: 547 GQNELLPNNIHPNAKTLRVWQRGVPVLPPVNALKRVL--SRGSPDEGYQEGSGTDV 600
              E  P    P AK +RVWQ+GVPVLPPV+ALKRVL  +R SPDEGYQEG+GTDV
Sbjct: 584 PIVEQFP----PGAKQMRVWQKGVPVLPPVSALKRVLGSTRSSPDEGYQEGTGTDV 635

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193700114|ref|XP_001942665.1| PREDICTED: leucine-rich repeat-containing protein 4B-like [Acyrthosiphon pisum]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 278/667 (41%), Positives = 380/667 (56%), Gaps = 97/667 (14%)

Query: 12  VSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRR 71
           V   +CP  C CKWKGGKQ +ECRDK LIT+P   ++  TQVLD+SGNNLQILP+ AF R
Sbjct: 22  VRADTCPEACQCKWKGGKQSVECRDKSLITVPTGIDAA-TQVLDVSGNNLQILPESAFAR 80

Query: 72  AGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLA 131
            GLLNLQ+++++RC IGQID  AL GLTN +EIDLS N+LT++P+ T   V  LRDL+LA
Sbjct: 81  LGLLNLQRVYMSRCRIGQIDGRALWGLTNAVEIDLSRNMLTAVPTATLADVPLLRDLSLA 140

Query: 132 RNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSV 191
            NPI ++   AF+   GLV+LD+S   L  I+  AF G   LE++KLN NRL+     +V
Sbjct: 141 GNPIQRVGPEAFRQCTGLVRLDLSGCELHEIAASAFVGIDRLETLKLNDNRLTELMAGTV 200

Query: 192 EPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVP--VQPAC-TGPERLSGKVFSDLHA 248
             L K+  +ELH+NPW CDC MR +K+WL D  NVP  V PAC +GP R++ + FS L A
Sbjct: 201 ATLHKVHGVELHENPWHCDCRMRPVKVWLTD-NNVPTAVDPACASGPGRVANRTFSALAA 259

Query: 249 DDFACKPEI-RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRI 307
           DDFAC+P+I + D + V+A + +NA+V CRV S P A +SWYWNGR L NNTAF  +QR+
Sbjct: 260 DDFACQPDILQQDDQTVQAATGDNASVSCRVHSSPAAKVSWYWNGRPLANNTAFGPFQRV 319

Query: 308 FVIEQ----GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFL 363
           F+ +     G     SSL+LTN Q SDSG+F CVAENRAG A+ANFTL VT  G GL FL
Sbjct: 320 FMTDDRTATGGGTGHSSLLLTNVQPSDSGQFLCVAENRAGRAEANFTLVVTRLG-GLAFL 378

Query: 364 GGGHINGISLALFFLIILILIIIIYLLIRMRTITYPNSKNPAQ--------IEVMANGNA 415
             G + G+S+ L FLI+ IL++I+YLL+R++ +   ++++  +            +NG A
Sbjct: 379 ANGQVAGLSVFLVFLIVTILLVIVYLLVRIKRLPPSSTRSDGKPQHLVTTAASATSNGTA 438

Query: 416 HAVVN---------KTPSLTPVIET-------------SSFTERKQFPP----------- 442
             VV           +P+ T V+ +             + F +     P           
Sbjct: 439 AVVVQVKQPVAGQATSPATTTVVSSMAVAVGGPYGGLDAGFDQATATEPVVGGVRRPAKL 498

Query: 443 ------PSYHSTEMISPNGQL-PNKTLHSVINISNPDLINDT-------RKPEGLSPEPH 488
                   ++ +      G L   +T+      SNPDLI D         +P G +   H
Sbjct: 499 TELSFATDHYDSGGFGHGGVLDAGRTVLYRSQPSNPDLIVDAPEQHSPQSQPPGAAHSQH 558

Query: 489 N---------------DDVLFQNNYWNQNIRQPTNSELGFDSNDKTPIIDGVSIGGELDD 533
           +               DD L+   +W      P+++     + D+TPII       E   
Sbjct: 559 HQQARRSASGEYRRTADDSLYSPGFWT-----PSDAA----ATDRTPII-------EKSP 602

Query: 534 NYPPDYGLPIVGQGQNELLPNNIHPNAKTLRVWQRGVPVLPPVNALKRVLSRGSPDEGYQ 593
             P      +    +  ++     P A +LRVW+ GV V+PP++ALKR L++GSPDEGYQ
Sbjct: 603 PLPAQSVAAVCSARETVMVAAAPDPKAASLRVWKHGVQVMPPLSALKRALNKGSPDEGYQ 662

Query: 594 EGSGTDV 600
           EG GTDV
Sbjct: 663 EGCGTDV 669

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66499167|ref|XP_624568.1| PREDICTED: leucine-rich repeat-containing protein 24 [Apis mellifera]

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 281/655 (42%), Positives = 376/655 (57%), Gaps = 85/655 (12%)

Query: 1   MYLVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNN 60
            +L +   + +V+   C   C CKWK GK+ +EC ++ L +IPE  + E TQVLD SGN+
Sbjct: 6   FFLYVTTLLGIVTSDKCAVECSCKWKSGKRTVECVNRALTSIPEWVDPE-TQVLDTSGND 64

Query: 61  LQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQ 120
           ++ LP   F R  L NLQ+L+L  C I +IDS AL GLTNL+E+DLS NLLT +P+ +F 
Sbjct: 65  IRTLPSNIFVRVRLTNLQRLYLRECRIDRIDSEALAGLTNLVELDLSHNLLTVVPTASFL 124

Query: 121 SVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNG 180
              FLRDL L+ NP+ ++   AF+  P LVKLD+S ++L  I  + F G   LES+KLN 
Sbjct: 125 DTPFLRDLVLSYNPLKRVHSHAFKSTPNLVKLDLSHTQLVEIEAKGFRGLDLLESLKLNN 184

Query: 181 NRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPV--QPACTGPERL 238
           N+LS     + EPL KL  IELHDNPW+CDC++R +KMWL  K N+P    P C GP +L
Sbjct: 185 NQLSTLHPGTFEPLNKLTSIELHDNPWICDCHLREMKMWLV-KHNLPTLQAPLCRGPRQL 243

Query: 239 SGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNN 298
             + F+DL  DDFAC+P + + SRY EA   ENA++VCRV +IPPA + WYWNGRLL N+
Sbjct: 244 MNRTFTDLGIDDFACRPILLIASRYAEATIGENASIVCRVSAIPPAKVKWYWNGRLLTNH 303

Query: 299 TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
           +AFSSYQ+I + E G++ ++S+LVLTNAQE+DS  FYCVAENRAG  +ANFTL V+ R  
Sbjct: 304 SAFSSYQKILIFEDGQFRKRSTLVLTNAQEADSSEFYCVAENRAGTVEANFTLHVSLRTA 363

Query: 359 GLPFLGGGHINGISLALFFLIILILIIIIYLLIRMRTITYPNSKNPAQIEVMANGNAHAV 418
           G+  LG GHI GIS AL  LI+ IL++I+ L +R R +   + K+    E ++  +A   
Sbjct: 364 GMSTLGSGHIAGISAALVVLILFILLVILVLFVRFRRMPVKDVKSAVPAEGVSGDSAGGN 423

Query: 419 VNKTPSLTPV--------IETSSFTERKQFPPPSY------------------------- 445
               PS            IET+SF    + PP S                          
Sbjct: 424 NENNPSSATSTTRRKHEEIETTSFGVESKPPPVSLTLSYVQRPQAALLQTENEYGASIGR 483

Query: 446 ---HSTE---MISPNGQLPNKTLHSVINISNPDLINDTRKPEGLSPEPHN---------- 489
              HS +   M++P     + T  S++ I NPDLI DTR+       P+           
Sbjct: 484 FDDHSQQPSVMVAPGACFSSTT--SLMPIDNPDLIRDTRRGSAEDITPYGGADYSRMEVV 541

Query: 490 DD--VLFQNNYWNQNIRQPTNSELGFDSNDKTPIIDGVSIGGELDDNYPPDYGLPIVGQG 547
           DD  +L+ +  W              ++ D       VS        YP    L +V   
Sbjct: 542 DDAKILYSSCMW--------------EARDTCRTTVPVS-------TYPSKETLAVVAP- 579

Query: 548 QNELLPNNIHPNAKTLRVWQRGVPVLPPVNALKRVL--SRGSPDEGYQEGSGTDV 600
               +     P AK +RVWQ+GVPVLPPV+ALKRVL  +R SPDEGYQEG+GTDV
Sbjct: 580 ----MVEQFPPGAKQIRVWQKGVPVLPPVSALKRVLGSTRSSPDEGYQEGTGTDV 630

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728941|ref|XP_003402770.1| PREDICTED: peroxidasin homolog [Bombus terrestris]

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 283/652 (43%), Positives = 381/652 (58%), Gaps = 85/652 (13%)

Query: 4   VIVFFVL----VVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGN 59
           V +F+V     +V+   C   C CKWK GK+ +EC ++ L +IPE  + E TQVLD SGN
Sbjct: 5   VFLFYVTTLLGIVTSDKCAVECSCKWKSGKRTVECVNRALTSIPEWIDPE-TQVLDTSGN 63

Query: 60  NLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTF 119
           +++ LP   F+R  L NLQ+L+L  CHI +IDS AL GLTNL+E+DLS+NLLT +P+ +F
Sbjct: 64  DIRTLPSNIFKRVRLTNLQRLYLRECHIDRIDSEALAGLTNLVELDLSNNLLTVVPTASF 123

Query: 120 QSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLN 179
               FLRDL L+ N + +I   AF+  P LVKLD+S ++L  I  + F G + LES+KLN
Sbjct: 124 LDTPFLRDLVLSNNLLKRIHSHAFKSTPNLVKLDLSHTQLVEIEAKGFRGLELLESLKLN 183

Query: 180 GNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPV--QPACTGPER 237
            N+LS     + EPL KL  IELHDNPW+CDC++R +KMWL  K N+P    P C  P++
Sbjct: 184 NNQLSTLHPGTFEPLNKLTSIELHDNPWICDCHLREMKMWLV-KHNLPTLQAPLCHSPKQ 242

Query: 238 LSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLN 297
           L  + F+DL  DDFAC+P + + SRY EA   ENA++VCRV +IPPA + WYWNGRLL N
Sbjct: 243 LLNRTFTDLSIDDFACRPILLIASRYAEATIGENASIVCRVSAIPPAKVKWYWNGRLLTN 302

Query: 298 NTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
           ++AFS YQ+I + E+G++ ++S+LVLTNAQE+DS  FYCVAENRAG  +ANFTL V+ R 
Sbjct: 303 HSAFSGYQKILIFEEGQFRKRSTLVLTNAQEADSSEFYCVAENRAGSVEANFTLHVSLRT 362

Query: 358 VGLPFLGGGHINGISLALFFLIILILIIIIYLLIRMRTITYPNSKNPAQIEVMA------ 411
            G+  LG G I GIS AL  LI+ IL++I+ L IR+R +   + K+    E ++      
Sbjct: 363 AGMSTLGSGQIAGISAALVVLILFILLVILVLFIRLRRMPLKDVKSSVPAEGVSVDSTGG 422

Query: 412 -NGNAHAVVNKTPSLTPVIETSSF-TERK----------QFPPPSYHSTE---------- 449
            N N  +  + T      IET+SF  E K          Q P  +   TE          
Sbjct: 423 NNENPSSATSTTRRKHEEIETTSFGVESKPPVSLNLSYVQRPQAAALQTENEYGSIGRFD 482

Query: 450 -------MISPNGQLPNKTLHSVINISNPDLINDTRKPEGLSPEPHN----------DD- 491
                  M++P     + T  S++ I NPDLI DTR+       P+           DD 
Sbjct: 483 DQSQQPSMVAPGACFSSTT--SLMPIDNPDLIRDTRRGSAEDITPYGGADYSRMEVVDDA 540

Query: 492 -VLFQNNYWNQNIRQPTNSELGFDSNDKTPIIDGVSIGGELDDNYPPDYGLPIVGQGQNE 550
            +L+ +  W              ++ D       VS        YP    L +V      
Sbjct: 541 KILYTSCMW--------------EARDTCRTTVPVS-------TYPSKEALAVVAP---- 575

Query: 551 LLPNNIHPNAKTLRVWQRGVPVLPPVNALKRVL--SRGSPDEGYQEGSGTDV 600
            +     P AK +RVWQ+GVPVLPPV+ALKRVL  +R SPDEGYQEG+GTDV
Sbjct: 576 -MVEQFPPGAKQIRVWQKGVPVLPPVSALKRVLGSTRSSPDEGYQEGTGTDV 626

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206922|gb|EFN84768.1| Leucine-rich repeat-containing protein 4B [Harpegnathos saltator]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 280/624 (44%), Positives = 370/624 (59%), Gaps = 50/624 (8%)

Query: 4   VIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQI 63
           V V  V   +   C   C CKWK GK+ +EC D+ L +IPE  + E TQVLD SGN+++ 
Sbjct: 13  VTVLGVAASAGDKCADECSCKWKSGKRTVECVDRALTSIPEWIDPE-TQVLDTSGNDIRH 71

Query: 64  LPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVR 123
           LP   F R  L NLQ+L+L  C I +IDS AL GLTNL+E+DLS+NLLT++PS +F    
Sbjct: 72  LPSNIFVRVSLTNLQRLYLRECRIDRIDSEALAGLTNLVELDLSNNLLTAVPSSSFTDTP 131

Query: 124 FLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRL 183
           FLRDL LA NP+ KI    F+  P LVKLD+S ++L  I  + F G   LES+KLN NRL
Sbjct: 132 FLRDLVLAYNPLEKIRSHTFESTPNLVKLDLSHTQLLEIESKGFRGLDLLESLKLNNNRL 191

Query: 184 SHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVP--VQPACTGPERLSGK 241
           S     + EPL KL  IELHDNPW+C+C++R +KMWL  K N+P  V P C GPE+L  +
Sbjct: 192 STLHPGTFEPLNKLTSIELHDNPWICNCHLREMKMWLV-KHNLPTLVAPVCHGPEQLLKR 250

Query: 242 VFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAF 301
            F+DL  DDFAC+P + + SRY EA   ENA++VCRV +IP   + WYWNGRLL N++AF
Sbjct: 251 AFTDLGVDDFACRPVMLIASRYAEATIGENASIVCRVSAIPAPRVKWYWNGRLLTNHSAF 310

Query: 302 SSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLP 361
           SSYQ+I + E+G++ ++S+L+LTNAQE+DS  FYCVAEN+AG A+ANFTL V+ R  G+ 
Sbjct: 311 SSYQKILIFEEGQFRKRSTLILTNAQEADSSEFYCVAENQAGSAEANFTLHVSLRTAGMS 370

Query: 362 FLGGGHINGISLALFFLIILILIIIIYLLIRMRTITYPNSKNPAQIEVMANGNAHAVVNK 421
            LG G I GIS AL  LI+ IL+II+ L IR+R +   + K+   +E       H  +  
Sbjct: 371 TLGSGQIAGISAALVVLILFILLIILVLFIRLRRMPLKDVKSSMPME----ATKHEEIET 426

Query: 422 TPSLT-----PVIETSSFTERKQFPPPSYHSTEMISPNGQLPNK------------TLHS 464
           T S       P     S+ +R Q      +    IS     P++            +  S
Sbjct: 427 TTSFGLESKPPASLHLSYVQRPQAAVVRDNEYATISRFDDQPSQPAVAMPAGACFSSTTS 486

Query: 465 VINISNPDLINDTRKPEGLSPEPHNDDVLFQNNYWNQNIRQPTNSELGFDSNDKTPIIDG 524
           ++ I NPD+I DTR+       P+   V         +  +   S   +++ D      G
Sbjct: 487 LMPIDNPDIIRDTRRGSAEDITPYG--VADYGRVETMDDGKMLYSSCLWEARDACR-TSG 543

Query: 525 VSIGGELDDNYPPDYGL------PIVGQGQNELLPNNIHPNAKTLRVWQRGVPVLPPVNA 578
           VS+       YP    L      P+V Q           P AK +RVWQ+GVPVLPPV+A
Sbjct: 544 VSVSA-----YPSKETLGVAVVAPVVEQ---------FPPGAKQMRVWQKGVPVLPPVSA 589

Query: 579 LKRVL--SRGSPDEGYQEGSGTDV 600
           LKRVL  +R SPDEGYQEG+GTDV
Sbjct: 590 LKRVLGSTRSSPDEGYQEGTGTDV 613

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412265|ref|XP_003489589.1| PREDICTED: peroxidasin homolog [Bombus impatiens]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 280/653 (42%), Positives = 376/653 (57%), Gaps = 86/653 (13%)

Query: 4   VIVFFVL----VVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGN 59
           V +F+V     +V+   C   C CKWK GK+ +EC ++ L +IPE  + E TQVLD SGN
Sbjct: 5   VFLFYVTTLLGIVTSDKCAVECSCKWKSGKRTVECVNRALTSIPEWIDPE-TQVLDTSGN 63

Query: 60  NLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTF 119
           +++ LP   F+R  L NLQ+L+L  C I +IDS AL GLTNL+E+DLS NLLT +P+ +F
Sbjct: 64  DIRTLPSNIFKRVRLTNLQRLYLRECRIDRIDSEALAGLTNLVELDLSHNLLTVVPTASF 123

Query: 120 QSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLN 179
               FLRDL L+ N + +I   AF+  P LVKLD+S ++L  I  + F G + LES+KLN
Sbjct: 124 LDTPFLRDLVLSNNLLKRIHSHAFKSTPNLVKLDLSHTQLVEIEAKGFRGLELLESLKLN 183

Query: 180 GNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPV--QPACTGPER 237
            N+LS     + EPL KL  IELHDNPW+CDC++R +KMWL  K N+P    P C GP++
Sbjct: 184 NNQLSTLHPGTFEPLNKLTSIELHDNPWICDCHLREMKMWLV-KHNLPTLQAPLCHGPKQ 242

Query: 238 LSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLN 297
           L  + F+DL  DDFAC+P + + SRY EA   ENA++VCRV +IPPA + WYWNGRLL N
Sbjct: 243 LLNRTFTDLSIDDFACRPILLIASRYAEATIGENASIVCRVSAIPPAKVKWYWNGRLLTN 302

Query: 298 NTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
           ++AFS YQ+I + E+G++ ++S+LVLTNAQE+DS  FYCVAENRAG  +ANFTL V+ R 
Sbjct: 303 HSAFSGYQKILIFEEGQFRKRSTLVLTNAQEADSSEFYCVAENRAGSVEANFTLHVSLRT 362

Query: 358 VGLPFLGGGHINGISLALFFLIILILIIIIYLLIRMRTITYPNSKNPAQIEVMA------ 411
            G+  LG G I GIS AL  LI+ IL+II+ L IR+R +   + K+    E ++      
Sbjct: 363 AGMSTLGSGQIAGISAALVVLILFILLIILVLFIRLRRMPLKDVKSSVPAEGVSADSTGG 422

Query: 412 -NGNAHAVVNKTPSLTPVIETSSF--------------TERKQ---------------FP 441
            N N  +  + T      IET+SF               +R Q               F 
Sbjct: 423 NNENPSSATSTTRRKHEEIETTSFGVESKPPVSLNLSYVQRPQAAALQTENEYGSIGRFD 482

Query: 442 PPSYHSTEMISPNGQLPNKTLHSVINISNPDLINDTRKPEGLSPEPHN----------DD 491
             S   + M++P     + T  S++ I NPDLI DTR+       P+           DD
Sbjct: 483 DQSQQPSVMVAPGACFSSTT--SLMPIDNPDLIRDTRRGSAEDITPYGGADYSRMEVVDD 540

Query: 492 --VLFQNNYWNQNIRQPTNSELGFDSNDKTPIIDGVSIGGELDDNYPPDYGLPIVGQGQN 549
             +L+ +  W       T   +                       YP    L +V     
Sbjct: 541 AKILYTSCMWEARDTCRTTVPMS---------------------TYPSKEALAVVAP--- 576

Query: 550 ELLPNNIHPNAKTLRVWQRGVPVLPPVNALKRVL--SRGSPDEGYQEGSGTDV 600
             +     P AK +RVWQ+GVPVLPPV+ALKRVL  +R SPDEGYQEG+GTDV
Sbjct: 577 --MVEQFPPGAKQIRVWQKGVPVLPPVSALKRVLGSTRSSPDEGYQEGTGTDV 627

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170061371|ref|XP_001866205.1| kek1 [Culex quinquefasciatus] gi|167879632|gb|EDS43015.1| kek1 [Culex quinquefasciatus]

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/486 (50%), Positives = 322/486 (66%), Gaps = 27/486 (5%)

Query: 16  SCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLL 75
           SCP++C CKWKGGKQ +EC DK LI IPE  +   TQVLDMSGNNLQILP+E F R  LL
Sbjct: 63  SCPASCQCKWKGGKQAVECIDKQLIIIPEHIDYS-TQVLDMSGNNLQILPRETFIRTNLL 121

Query: 76  NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
           NLQKL+L  C +GQID GA  GLTNL+E+DLS NLLT++PS +F  +  LRDL LARN I
Sbjct: 122 NLQKLYLRNCRLGQIDDGAFAGLTNLVELDLSLNLLTAVPSASFLHIASLRDLTLARNHI 181

Query: 136 SKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL 195
            KIE  AF+ V  L KLD+S   ++ I+P+AF G  SL S+KLNGN+LS    +++E L 
Sbjct: 182 QKIESHAFRNVSSLTKLDLSYCEIQTIAPQAFEGLTSLHSLKLNGNQLSELRPKTIETLS 241

Query: 196 KLMMIELHDNPWVCDCNMRSIKMWLADKK-NVPVQPACT-GPERLSGKVFSDLHADDFAC 253
           KL  +ELH+NPWVCDC +R+ K+W+ D     P+ P C  GPER+ GK F++LH DDFAC
Sbjct: 242 KLHGVELHENPWVCDCRLRATKVWITDNNIPYPIAPICAGGPERIIGKTFAELHVDDFAC 301

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           KPE+    RY++A + ENA++ CR  ++P A ++WYWNG+LL NN+ FSSYQR++V EQG
Sbjct: 302 KPEMLPVRRYIQAYTGENASIECRTSAVPSANVNWYWNGKLLANNSQFSSYQRVYVYEQG 361

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGGHINGISL 373
            +E++S LVLTNAQE+DS  FYCV ENRAG A+ANFTL V  R +G   +    I G+S 
Sbjct: 362 LFEKRSRLVLTNAQETDSNEFYCVVENRAGTAEANFTLHVVMRDIGFA-IENKQIIGLSA 420

Query: 374 ALFFLIILILIIIIYLLIRMRTITYPNSKNPAQIEVMANGNAHAVVNKTPSLTPVIETSS 433
           AL  LI+ IL+II++LL+R+R I    +K P Q+EV+ + +  + VN   S TP+ +  S
Sbjct: 421 ALVILILFILLIILFLLVRLRRIPMTETKTPGQVEVITSVSPSSNVNGKVS-TPINDVHS 479

Query: 434 FTERK-----------QFPP---------PSYHSTEMISPNGQLPNKTLHSVINISNPDL 473
             +RK           Q PP           Y +   +   G       HS    +NPDL
Sbjct: 480 -PDRKNSGDLKCANPVQKPPRLTDLPYSTSHYDAGGSLIAAGNCFVSPTHSSAG-NNPDL 537

Query: 474 INDTRK 479
           INDT++
Sbjct: 538 INDTKR 543

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	600
FB|FBgn0015399	880	kek1 "kekkon-1" [Drosophila me	0.68	0.463	0.502	3.4e-131
FB|FBgn0015400	894	kek2 "kekkon-2" [Drosophila me	0.555	0.372	0.387	4e-68
FB|FBgn0028370	1021	kek3 "kekkon-3" [Drosophila me	0.573	0.336	0.407	1.9e-65
FB|FBgn0031016	931	kek5 "kekkon5" [Drosophila mel	0.556	0.358	0.324	2.9e-44
FB|FBgn0032484	649	kek4 "kekkon4" [Drosophila mel	0.535	0.494	0.325	9.2e-39
FB|FBgn0039862	836	kek6 "kek6" [Drosophila melano	0.553	0.397	0.288	3e-38
UNIPROTKB|F1P2C4	423	LRRC4C "Uncharacterized protei	0.511	0.725	0.305	9e-27
UNIPROTKB|E2REC5	639	LRRC4C "Uncharacterized protei	0.516	0.485	0.300	7.3e-26
UNIPROTKB|F1SHH6	640	LRRC4C "Uncharacterized protei	0.516	0.484	0.303	2e-25
UNIPROTKB|F1MXH5	640	LRRC4C "Uncharacterized protei	0.516	0.484	0.300	2.7e-25

FB|FBgn0015399 kek1 "kekkon-1" [Drosophila melanogaster (taxid:7227)]

 Score = 1044 (372.6 bits), Expect = 3.4e-131, Sum P(4) = 3.4e-131
 Identities = 209/416 (50%), Positives = 273/416 (65%)

Query:    17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
             C + C CKWKGGKQ +EC D+ LI IPE  +   TQVLDMSGN LQ L  E F RA LLN
Sbjct:    90 CQTVCACKWKGGKQTVECIDRHLIQIPEHIDPN-TQVLDMSGNKLQTLSNEQFIRANLLN 148

Query:    77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
             LQKL+L  C IG+I+     GLTNL+E+DLS NLL ++PSL    +  LR+L LA N I 
Sbjct:   149 LQKLYLRNCKIGEIERETFKGLTNLVELDLSHNLLVTVPSLALGHIPSLRELTLASNHIH 208

Query:   137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
             KIE  AF   P L KLD+S   ++ IS +AF G + L  ++LNGN+LS    +++E L +
Sbjct:   209 KIESQAFGNTPSLHKLDLSHCDIQTISAQAFGGLQGLTLLRLNGNKLSELLPKTIETLSR 268

Query:   197 LMMIELHDNPWVCDCNMRSIKMWLADKKNVP--VQPACTG-PERLSGKVFSDLHADDFAC 253
             L  IELHDNPW+CDC +R  K+WL  K+N+P  V P C+G PER+  + F+DLH D+FAC
Sbjct:   269 LHGIELHDNPWLCDCRLRDTKLWLM-KRNIPYPVAPVCSGGPERIIDRSFADLHVDEFAC 327

Query:   254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ- 312
             +PE+   S YVEA   ENA++ CR  ++P A I+WYWNGRLL NN+AF++YQRI ++EQ 
Sbjct:   328 RPEMLPISHYVEAAMGENASITCRARAVPAANINWYWNGRLLANNSAFTAYQRIHMLEQV 387

Query:   313 -GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGGHINGX 371
              G +E++S LVLTNAQE+DS  FYCVAENRAG+A+ANFTL V+ R  G+  LG G I G 
Sbjct:   388 EGGFEKRSKLVLTNAQETDSSEFYCVAENRAGMAEANFTLHVSMRAAGMASLGSGQIVGL 447

Query:   372 XXXXXXXXXXXXXXXXXXXXRMRTITYPNSKNPAQIEVMANGN-AHAVVNKTPSLT 426
                                 R++   Y +SK P  +EV+ + N  +++ NKT   T
Sbjct:   448 SAALVALIVFALGVIMCLLLRVKRQPYVDSKTPNHMEVITSVNHQNSITNKTQPAT 503

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0048477 "oogenesis" evidence=IMP

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IGI;IMP;TAS

GO:0005154 "epidermal growth factor receptor binding" evidence=IPI

GO:0007175 "negative regulation of epidermal growth factor-activated receptor activity" evidence=IDA;TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0048019 "receptor antagonist activity" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0015400 kek2 "kekkon-2" [Drosophila melanogaster (taxid:7227)]

 Score = 646 (232.5 bits), Expect = 4.0e-68, Sum P(3) = 4.0e-68
 Identities = 133/343 (38%), Positives = 197/343 (57%)

Query:    18 PSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNL 77
             P  C+CKWKGGKQ +EC  + L  +PE  +   TQVL+ SGN LQ+L  E F R  LLNL
Sbjct:    22 PEVCVCKWKGGKQTVECGGQQLSNLPEGMDPG-TQVLNFSGNALQVLQSERFLRMDLLNL 80

Query:    78 QKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISK 137
             QK++L+R  + +I   A  GLTNL+E+DLS+N L ++PS TFQ    L  L+L+ NPI +
Sbjct:    81 QKIYLSRNQLIRIHEKAFRGLTNLVELDLSENALQNVPSETFQDYSSLMRLSLSGNPIRE 140

Query:   138 IEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKL 197
             ++  AF+ +  L  L++S  ++E I  EAF G  +LE ++L+GNR+       + P   L
Sbjct:   141 LKTSAFRHLSFLTTLELSNCQVERIENEAFVGMDNLEWLRLDGNRIGFIQGTHILPK-SL 199

Query:   198 MMIELHDNPWVCDCNMRSIKMWLADKKNVPV--QPACTGPERLSGKVFSDLHADDFACKP 255
               I LH N W CDC +  I  WL +  N P+  +P C  P RL G+V   L  +  AC P
Sbjct:   200 HGISLHSNRWNCDCRLLDIHFWLVNY-NTPLAEEPKCMEPARLKGQVIKSLQREQLACLP 258

Query:   256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ--- 312
             E+   S Y E     N ++ C V +IP   + W +NG+++ N++   +    + I++   
Sbjct:   259 EVSPQSSYTEVSEGRNMSITCLVRAIPEPKVLWLFNGQVMSNDSLMDNLHMYYYIDETIG 318

Query:   313 --GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
               G  E++S + + N    D+G F CV +N AG   +N+TL+V
Sbjct:   319 VSGAEEKRSEIFIYNVGAEDNGTFSCVGQNIAGTTFSNYTLRV 361

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

FB|FBgn0028370 kek3 "kekkon-3" [Drosophila melanogaster (taxid:7227)]

 Score = 671 (241.3 bits), Expect = 1.9e-65, P = 1.9e-65
 Identities = 147/361 (40%), Positives = 208/361 (57%)

Query:    17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
             CP+ C CKWK GK+ + C +  L  IP+ P    TQ+LD+SGN +Q++P ++F  A LLN
Sbjct:    79 CPAVCECKWKSGKESVLCLNANLTHIPQ-PLDAGTQLLDLSGNEIQLIPDDSFATAQLLN 137

Query:    77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
             LQK++LARCH+  I+  A   L NL+E+DLS NLL++IPSL    V  LR+L L+ NPI 
Sbjct:   138 LQKVYLARCHLRLIERHAFRKLINLVELDLSQNLLSAIPSLALYHVSELRELRLSGNPIL 197

Query:   137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKS-LESIKLNGNRLSHFPVRSVEPLL 195
             ++   AF  VP LVKL++S+ RL HI+  AF G +S LE +KL+GNRLS     ++  L 
Sbjct:   198 RVPDDAFGHVPQLVKLELSDCRLSHIAVRAFAGLESSLEWLKLDGNRLSEVRSGTITSLA 257

Query:   196 KLMMIELHDNPWVCDCNMRSIKMWLADKKNVP--VQPACTGPERLSGKVFSDLHADDFAC 253
              L  +EL  N W C C++R ++ W+  ++N+P  + P C  P RLSG+ +  L  DDFAC
Sbjct:   258 SLHGLELARNTWNCSCSLRPLRAWML-QQNIPSGIPPTCESPPRLSGRAWDKLDVDDFAC 316

Query:   254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTA-----FSSYQRIF 308
              P+I         V   N T+ C V+ +P  A+ W    RL+ N +A       S  R  
Sbjct:   317 VPQIVATDTTAHGVEGRNITMSCYVEGVPQPAVKWLLKNRLIANLSAGGDGDSDSEPRTA 376

Query:   309 VIEQGE--Y-----ERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLP 361
                QG   Y        S+L +  A   D+G + C AEN+AG  +A+ TL V+ R    P
Sbjct:   377 AATQGRKTYVVNMLRNASNLTILTADMQDAGIYTCAAENKAGKVEASVTLAVSRRPPEAP 436

Query:   362 F 362
             +
Sbjct:   437 W 437

GO:0005886 "plasma membrane" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISM

FB|FBgn0031016 kek5 "kekkon5" [Drosophila melanogaster (taxid:7227)]

 Score = 475 (172.3 bits), Expect = 2.9e-44, P = 2.9e-44
 Identities = 112/345 (32%), Positives = 180/345 (52%)

Query:    20 TCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQK 79
             TC C+W  GK+  +C++K L  IP+   +E+ QVLD + N +  L +E F  AGL N+ K
Sbjct:    45 TCHCQWNSGKKSADCKNKALTKIPQDMSNEM-QVLDFAHNQIPELRREEFLLAGLPNVHK 103

Query:    80 LFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIE 139
             +FL  C I ++   A  GL  LIE+DLS N +  +   TF  +  LR++ +  N I  + 
Sbjct:   104 IFLRNCTIQEVHREAFKGLHILIELDLSGNRIRELHPGTFAGLEKLRNVIINNNEIEVLP 163

Query:   140 KGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMM 199
                F  +  L +++   +RL  +    F G  +L +I L  NRLSH    + + L KLM 
Sbjct:   164 NHLFVNLSFLSRIEFRNNRLRQVQLHVFAGTMALSAISLEQNRLSHLHKETFKDLQKLMH 223

Query:   200 IELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACKPEIRM 259
             + L  N W C C ++  + +   K+       C  P +L GK++S++ +++FAC+P I  
Sbjct:   224 LSLQGNAWNCSCELQDFRDFAISKRLYTPPTDCQEPPQLRGKLWSEVPSENFACRPRILG 283

Query:   260 DSR-YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNT----AFSSYQRIFVIEQGE 314
               R ++EA + +N ++ CR+   P   ++W +N R L          +S +++   EQ  
Sbjct:   284 SVRSFIEA-NHDNISLPCRIVGSPRPNVTWVYNKRPLQQYDPRVRVLTSVEQM--PEQPS 340

Query:   315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT--YRG 357
                 S L +   + SD G + CVA+NR G A+A F L V+  Y G
Sbjct:   341 QVLTSELRIVGVRASDKGAYTCVADNRGGRAEAEFQLLVSGDYAG 385

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0030510 "regulation of BMP signaling pathway" evidence=IDA

FB|FBgn0032484 kek4 "kekkon4" [Drosophila melanogaster (taxid:7227)]

 Score = 418 (152.2 bits), Expect = 9.2e-39, P = 9.2e-39
 Identities = 110/338 (32%), Positives = 174/338 (51%)

Query:    21 CICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKL 80
             C CKW  GK+  +CR+  L  +PE    E+ QVLD+S N++  L + AF    L NLQKL
Sbjct:    45 CHCKWNSGKKTADCRNLSLSGVPEYLSPEV-QVLDLSHNHIFYLEENAFLTTHLQNLQKL 103

Query:    81 FLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEK 140
              +    +  ++  +   L  LIE+DLS+NLL  +    F  +  +R + L  N +  +  
Sbjct:   104 LIRNGTLKYLNQRSFTQLQILIELDLSNNLLVDLLPNVFDCLSKVRAIFLNGNLLQALRH 163

Query:   141 GAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMI 200
             G F+ +  L K+++  +RL  I  +AF G   L  I L+ N L+   V S + L KL  +
Sbjct:   164 GVFRNLKYLHKIELKRNRLVSIDAKAFVGVPLLSQIYLDNNELTKLRVESFQDLTKLTAL 223

Query:   201 ELHDNPWVCDCNMRSIKMWLADKKNVPVQP-ACTGPERLSGKVFSDLHADDFACKPEIRM 259
              L +NPW C C+++  + ++    N+   P +C  P +L G+++ +   + FACKP+I  
Sbjct:   224 SLVENPWNCTCDLQMFRDFVIGM-NLYTPPTSCHYPLQLRGRLWIEDQPEAFACKPKIVY 282

Query:   260 DSRYVEA-VSSENATVVCRVDSIPPAAISW-YWNGRLLLNNTAFSSYQ--RIFV--IEQG 313
              +       S EN T++CRV   P   I+W Y N      +    S Q  RI++  + + 
Sbjct:   283 PTLSTSINTSKENVTLICRVHGSPNTVIAWDYTNQVYESRSKPVKSLQKQRIYIELLRED 342

Query:   314 EYE-RK-------SSLVLTNAQESDSGRFYCVAENRAG 343
             E + RK       S L + NA++SD G + C+AEN  G
Sbjct:   343 ESKIRKFGHDVFVSRLTIVNARKSDEGVYTCLAENPGG 380

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

FB|FBgn0039862 kek6 "kek6" [Drosophila melanogaster (taxid:7227)]

 Score = 418 (152.2 bits), Expect = 3.0e-38, P = 3.0e-38
 Identities = 98/340 (28%), Positives = 156/340 (45%)

Query:    17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
             C S C CKW  GK+   C    L TIP    +EL QVL ++ N++  L +E F   GLLN
Sbjct:    38 CASNCTCKWTNGKKSAICSSLQLTTIPNTLSTEL-QVLVLNDNHIPYLNREEFSTLGLLN 96

Query:    77 LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
             LQ+++L +  +  I   +   L  L+EIDLSDN L  +   TF     LR L L  NP+ 
Sbjct:    97 LQRIYLKKSEVQYIHKESFRNLKILVEIDLSDNKLEMLDKDTFMGNDRLRILYLNGNPLK 156

Query:   137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
             ++    F  +P L  LDM +  + +I P +      LE + L  N L        + +  
Sbjct:   157 RLAAYQFPILPHLRTLDMHDCLISYIDPMSLANLNLLEFLNLKNNLLESLSEYVFQHMAN 216

Query:   197 LMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACKPE 256
             L  + L +NPW C+C +R  + W  + +   V   C GP     + +  +  + F C P 
Sbjct:   217 LKTLSLEENPWQCNCKLRKFRGWYVNSRLSSVSLVCKGPPAQKDRTWDSVDDELFGCPPR 276

Query:   257 IRM-DSRYVEAVS-SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
             + + ++  V+ +    N T  C V   P   ++W  NG++L N+      + I       
Sbjct:   277 VEIFNNEEVQNIDIGSNTTFSCLVYGDPLPEVAWELNGKILDNDNVLFESESI-----AS 331

Query:   315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
              +  S+L + N    D+G + C   N  G    N ++ ++
Sbjct:   332 DKLWSNLTVFNVTSLDAGTYACTGSNSIGSMTQNISIYLS 371

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|F1P2C4 LRRC4C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 310 (114.2 bits), Expect = 9.0e-27, P = 9.0e-27
 Identities = 101/331 (30%), Positives = 159/331 (48%)

Query:    32 MECRDKFLITIPEAPESELTQVLDM--SGNNLQILPKEAFRRAGLLNLQKLFLARC-HIG 88
             +E  D  L TIP      L+++ ++    N ++ +P  AF R  + +L++L L     + 
Sbjct:   106 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR--IPSLRRLDLGELKRLS 163

Query:    89 QIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG 148
              I  GA +GL+NL  ++L+   L  IP+LT   V+ L +L+L+ N ++ I  G+FQ +  
Sbjct:   164 YISEGAFEGLSNLRYLNLAMCNLREIPNLT-PLVK-LDELDLSGNHLTAIRPGSFQGLMH 221

Query:   149 LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV 208
             L KL M +S+++ I   AF   +SL  I L  N L+  P     PL +L  I LH NPW 
Sbjct:   222 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL-RLERIHLHHNPWN 280

Query:   209 CDCNMRSIKMWLADK--KNVPVQPACTGPERLSGKVFSDLHADDFAC-KPEIRMDSRYVE 265
             C+C++  +  W+ DK   N      C  P  L G+   +L  + F C  P I      + 
Sbjct:   281 CNCDILWLSWWIKDKAPSNTACCARCHTPPSLKGRYIGELDLNYFTCYAPVIVEPPADLN 340

Query:   266 AVSSENATVVCRVDSIPPAAISWYW-NGRLLLNNTAFSSYQ-RIFVIEQGEYERKSSLVL 323
                   A + CR  S    ++SW   NG ++ +     +Y+ RI V+  G      +L  
Sbjct:   341 VTEGMAAEMKCRA-STSLTSVSWITPNGSVMTHG----AYRVRIAVLSDG------TLNF 389

Query:   324 TNAQESDSGRFYCVAENRAGIADANFTLQVT 354
             T     D+G + C+  N  G   A+ TL VT
Sbjct:   390 TKVTVQDTGLYTCMVSNSVGNTTASATLNVT 420

GO:0016021 "integral to membrane" evidence=IEA

GO:0050770 "regulation of axonogenesis" evidence=IEA

UNIPROTKB|E2REC5 LRRC4C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 320 (117.7 bits), Expect = 7.3e-26, P = 7.3e-26
 Identities = 99/329 (30%), Positives = 155/329 (47%)

Query:    32 MECRDKFLITIPEAPESELTQVLDM--SGNNLQILPKEAFRRAGLLNLQKLFLARC-HIG 88
             +E  D  L TIP      L+++ ++    N ++ +P  AF R  + +L++L L     + 
Sbjct:   129 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR--IPSLRRLDLGELKRLS 186

Query:    89 QIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG 148
              I  GA +GL+NL  ++L+   L  IP+LT   ++ L +L+L+ N +S I  G+FQ +  
Sbjct:   187 YISEGAFEGLSNLRYLNLAMCNLREIPNLT-PLIK-LDELDLSGNHLSAIRPGSFQGLMH 244

Query:   149 LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV 208
             L KL M +S+++ I   AF   +SL  I L  N L+  P     PL  L  I LH NPW 
Sbjct:   245 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 304

Query:   209 CDCNMRSIKMWLADK--KNVPVQPACTGPERLSGKVFSDLHADDFAC-KPEIRMDSRYVE 265
             C+C++  +  W+ D    N      C  P  L G+   +L  + F C  P I      + 
Sbjct:   305 CNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLN 364

Query:   266 AVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTN 325
                   A + CR  S    ++SW      ++ + A+    RI V+  G      +L  TN
Sbjct:   365 VTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKV--RIAVLSDG------TLNFTN 415

Query:   326 AQESDSGRFYCVAENRAGIADANFTLQVT 354
                 D+G + C+  N  G   A+ TL VT
Sbjct:   416 VTVQDTGMYTCMVSNSVGNTTASATLNVT 444

GO:0050770 "regulation of axonogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SHH6 LRRC4C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 321 (118.1 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
 Identities = 100/329 (30%), Positives = 155/329 (47%)

Query:    32 MECRDKFLITIPEAPESELTQVLDM--SGNNLQILPKEAFRRAGLLNLQKLFLARC-HIG 88
             +E  D  L TIP      L+++ ++    N ++ +P  AF R  + +L++L L     + 
Sbjct:   129 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR--IPSLRRLDLGELKRLS 186

Query:    89 QIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG 148
              I  GA +GL+NL  ++L+   L  IP+LT   V+ L +L+L+ N +S I  G+FQ +  
Sbjct:   187 YISEGAFEGLSNLRYLNLAMCNLREIPNLT-PLVK-LDELDLSGNHLSAIRPGSFQGLMH 244

Query:   149 LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV 208
             L KL M +S+++ I   AF   +SL  I L  N L+  P     PL  L  I LH NPW 
Sbjct:   245 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 304

Query:   209 CDCNMRSIKMWLADK--KNVPVQPACTGPERLSGKVFSDLHADDFAC-KPEIRMDSRYVE 265
             C+C++  +  W+ D    N      C  P  L G+   +L  + F C  P I      + 
Sbjct:   305 CNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLN 364

Query:   266 AVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTN 325
                   A + CR  S    ++SW      ++ + A+    RI V+  G      +L  TN
Sbjct:   365 VTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKV--RIAVLSDG------TLNFTN 415

Query:   326 AQESDSGRFYCVAENRAGIADANFTLQVT 354
                 D+G + C+  N  G   A+ TL VT
Sbjct:   416 VTVQDTGMYTCMVSNSVGNTTASATLNVT 444

GO:0050770 "regulation of axonogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MXH5 LRRC4C "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 320 (117.7 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
 Identities = 99/329 (30%), Positives = 155/329 (47%)

Query:    32 MECRDKFLITIPEAPESELTQVLDM--SGNNLQILPKEAFRRAGLLNLQKLFLARC-HIG 88
             +E  D  L TIP      L+++ ++    N ++ +P  AF R  + +L++L L     + 
Sbjct:   129 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR--IPSLRRLDLGELKRLS 186

Query:    89 QIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG 148
              I  GA +GL+NL  ++L+   L  IP+LT   ++ L +L+L+ N +S I  G+FQ +  
Sbjct:   187 YISEGAFEGLSNLRYLNLAMCNLREIPNLT-PLIK-LDELDLSGNHLSAIRPGSFQGLMH 244

Query:   149 LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV 208
             L KL M +S+++ I   AF   +SL  I L  N L+  P     PL  L  I LH NPW 
Sbjct:   245 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 304

Query:   209 CDCNMRSIKMWLADK--KNVPVQPACTGPERLSGKVFSDLHADDFAC-KPEIRMDSRYVE 265
             C+C++  +  W+ D    N      C  P  L G+   +L  + F C  P I      + 
Sbjct:   305 CNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLN 364

Query:   266 AVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTN 325
                   A + CR  S    ++SW      ++ + A+    RI V+  G      +L  TN
Sbjct:   365 VTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKV--RIAVLSDG------TLNFTN 415

Query:   326 AQESDSGRFYCVAENRAGIADANFTLQVT 354
                 D+G + C+  N  G   A+ TL VT
Sbjct:   416 VTVQDTGMYTCMVSNSVGNTTASATLNVT 444

GO:0050770 "regulation of axonogenesis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	600
smart00410	85	smart00410, IG_like, Immunoglobulin like	9e-15
smart00409	85	smart00409, IG, Immunoglobulin	9e-15
cd00096	74	cd00096, Ig, Immunoglobulin domain	4e-13
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-11
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-11
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-09
smart00082	51	smart00082, LRRCT, Leucine rich repeat C-terminal	3e-09
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	4e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-08
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	7e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	1e-06
cd05758	98	cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (I	2e-06
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	2e-06
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	3e-06
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	3e-06
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	5e-06
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	5e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-06
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	1e-05
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	4e-05
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	4e-05
pfam00047	62	pfam00047, ig, Immunoglobulin domain	5e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	8e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	1e-04
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	2e-04
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	3e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	4e-04
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	4e-04
cd04975	101	cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)	4e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	5e-04
cd04979	89	cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like	7e-04
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	0.001
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	0.001
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
cd05892	75	cd05892, Ig_Myotilin_C, C-terminal immunoglobulin	0.002
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	0.003
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	0.004
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	0.004
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 69.5 bits (170), Expect = 9e-15
 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 8/93 (8%)

Query: 261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSS 320
              V     E+ T+ C     PP  ++WY  G  LL  +      R  V   G     S+
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAES-----GRFSVSRSG---STST 52

Query: 321 LVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           L ++N    DSG + C A N +G A +  TL V
Sbjct: 53  LTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 69.5 bits (170), Expect = 9e-15
 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 8/93 (8%)

Query: 261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSS 320
              V     E+ T+ C     PP  ++WY  G  LL  +      R  V   G     S+
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAES-----GRFSVSRSG---STST 52

Query: 321 LVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           L ++N    DSG + C A N +G A +  TL V
Sbjct: 53  LTISNVTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 64.4 bits (156), Expect = 4e-13
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS 331
            T+ C     PP  I+W  NG+ L ++              G     S+L ++N    DS
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSR-----GTSSGSSTLTISNVTLEDS 55

Query: 332 GRFYCVAENRAGIADANFT 350
           G + CVA N AG   A+ T
Sbjct: 56  GTYTCVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 76  NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
           NL+ L L+   +  I  GA  GL NL  +DLS N LTSI    F  +  LR L+L+ N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 58.7 bits (143), Expect = 3e-11
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query: 125 LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRL 183
           L+ L+L+ N ++ I  GAF+ +P L  LD+S + L  ISPEAF+G  SL S+ L+GN L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + LD+S N L ++P  AF+  GL NL+ L L+  ++  I   A  GL +L  +DLS N L
Sbjct: 3   KSLDLSNNRLTVIPDGAFK--GLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|214507 smart00082, LRRCT, Leucine rich repeat C-terminal domain

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 205 NPWVCDCNMRSIKMWLADKKNVPVQPA--CTGPERLSGKVFSDLHADDFACK 254
           NP++CDC +R +  WL   +++       C  P  L G +   LH+ +F C 
Sbjct: 1   NPFICDCELRWLLRWLQANEHLQDPVDLRCASPSSLRGPLLELLHS-EFKCP 51

Length = 51

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 11/87 (12%)

Query: 269 SENATVV--CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA 326
            E  +    C V   P   +SW+ +G+ L ++  F         E G Y    +L ++N 
Sbjct: 13  QEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFK-----VTYEGGTY----TLTISNV 63

Query: 327 QESDSGRFYCVAENRAGIADANFTLQV 353
           Q  D G++ CVA N AG A+A+  L V
Sbjct: 64  QPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.6 bits (122), Expect = 2e-08
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRL 159
           NL  +DLS+N LT IP   F+ +  L+ L+L+ N ++ I   AF  +P L  LD+S + L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.6 bits (131), Expect = 7e-08
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 4/147 (2%)

Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           LL L  L L    +   +   L  LTNL  +DL +N +T IP L       L++L+L+ N
Sbjct: 92  LLPLPSLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN 150

Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP 193
            I  +     + +P L  LD+S + L  +     +   +L ++ L+GN++S  P      
Sbjct: 151 KIESLP-SPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNLNNLDLSGNKISDLPPEIELL 208

Query: 194 LLKLMMIELHDNPWVCDCNMRSIKMWL 220
              L  ++L +N  +   +  S    L
Sbjct: 209 -SALEELDLSNNSIIELLSSLSNLKNL 234

Length = 394

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 13/74 (17%)

Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
           ++ T+ C  +  P   I+W        +        R            S+L + +    
Sbjct: 3   QSVTLTCPAEGNPVPNITWL------KDGKPLPESNRF-------VASGSTLTIKSVSLE 49

Query: 330 DSGRFYCVAENRAG 343
           DSG + CVAEN AG
Sbjct: 50  DSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 148 GLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
            L  LD+S +RL  I   AF G  +L+ + L+GN L+     +   L  L  ++L  N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 27/101 (26%), Positives = 34/101 (33%), Gaps = 22/101 (21%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           KP +      V     E+ T+ C     PP   +WY       +    SS Q  F     
Sbjct: 1   KPVLTPSPTVVFE--GEDVTLTCSAPGNPPPNYTWY------KDGVPLSSSQNGFFT--- 49

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQV 353
                      N    DSG + CVA N  G   +N  TL V
Sbjct: 50  ----------PNVSAEDSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           P I        A+  +   V C + S PP   I W W    L       S  R + +E  
Sbjct: 2   PPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENEL----ESGSSGR-YTVETD 56

Query: 314 EYER--KSSLVLTNAQESD-SGRFYCVAENRAGIADANFTLQ 352
                  S+L ++N QESD    + C A N  G   A  +L+
Sbjct: 57  PSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAIISLE 98

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 98

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 12/78 (15%)

Query: 276 CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY 335
           C+  + P   ISW     LL N++      RI +   G      SL + N  +SD G++ 
Sbjct: 8   CKPKAAPKPTISWSKGTELLTNSS------RICIWPDG------SLEILNVTKSDEGKYT 55

Query: 336 CVAENRAGIADANFTLQV 353
           C AEN  G A++  +L V
Sbjct: 56  CFAENFFGKANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 22/106 (20%)

Query: 255 PEIRMDSRYVEAVS--SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           P IR     V A +   ++ T+ C  D  P   ++W  +G                 IE 
Sbjct: 2   PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGE---------------PIES 46

Query: 313 GE-----YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           GE      E  S + + +  + D   + C+AEN+AG  +A   L+V
Sbjct: 47  GEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
           E   + C  + IP   I+W  NG  +         +R+            +L+L+N Q +
Sbjct: 2   ETGRLDCEAEGIPQPTITWRLNGVPI-EELPPDPRRRVD---------GGTLILSNVQPN 51

Query: 330 DSGRFYCVAENRAGIADANFTLQV 353
           D+  + C A N  G   AN  + V
Sbjct: 52  DTAVYQCNASNVHGYLLANAFVHV 75

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 276 CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS-SLVLTNAQESDSGRF 334
           C     P   I+W  +G+           ++   I   +  +K  +L+L +   SDSG++
Sbjct: 16  CPASGNPRPTITWLKDGKPF---------KKEHRIGGYKVRKKKWTLILESVVPSDSGKY 66

Query: 335 YCVAENRAGIADANFTLQV 353
            C+ EN+ G  +  + + V
Sbjct: 67  TCIVENKYGSINHTYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 15/88 (17%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           KP I +        S    T+ C  +  PP   ISWY NG +   +    S         
Sbjct: 1   KPVITVSPSPSV-TSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSG------- 52

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAEN 340
                 S+L L++    DSG + CVA N
Sbjct: 53  ------STLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 44/137 (32%), Positives = 61/137 (44%), Gaps = 7/137 (5%)

Query: 50  LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHI--GQIDSGALDGLTNLIEIDLS 107
           L   LD+S NNLQ   +   R+  + +LQ L LAR     G  DS     L NL   DLS
Sbjct: 429 LVYFLDISNNNLQ--GRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENL---DLS 483

Query: 108 DNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAF 167
            N  +        S+  L  L L+ N +S            LV LD+S ++L    P +F
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Query: 168 TGAKSLESIKLNGNRLS 184
           +    L  + L+ N+LS
Sbjct: 544 SEMPVLSQLDLSQNQLS 560

Length = 968

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 99  TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
            +L  I +  ++ TSI    F     L+ + L  + ++ I   AF     L  + +  S 
Sbjct: 11  CSLTSITIPSSV-TSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITIPSS- 67

Query: 159 LEHISPEAFTGAKSLESIKLNGN 181
           L  I   AF+   SL SI +  N
Sbjct: 68  LTSIGEYAFSNCSSLTSITIPSN 90

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 254 KPEIRMDSRYVE---AVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI 310
           +P+I     Y+E   AV  E  T+ C  +  P   I+W        +    S   RI V 
Sbjct: 2   QPKIT----YLENQTAVELEQITLTCEAEGDPIPEITWR-RATRNFSEGDKSLDGRIVVR 56

Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAG 343
                 R SSL L + Q +D+GR+ C A NR G
Sbjct: 57  GH---ARVSSLTLKDVQLTDAGRYDCEASNRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
           E+A   C VD  P   ++W   G+++       S QR   I   EY  KS+  ++  Q S
Sbjct: 19  ESARFSCDVDGEPAPTVTWMREGQII------VSSQR-HQITSTEY--KSTFEISKVQMS 69

Query: 330 DSGRFYCVAENRAGIADANFTL 351
           D G +  V EN  G  +A FTL
Sbjct: 70  DEGNYTVVVENSEGKQEAQFTL 91

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 269 SENATVVCRVDSIPPAAISWY-WNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ 327
             + T+ C V   P   ++W+     L  + T  +   R+            +L ++N  
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVS---------SITLTISNVT 51

Query: 328 ESDSGRFYCVA 338
             DSG + CV 
Sbjct: 52  PEDSGTYTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 39.8 bits (94), Expect = 8e-05
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 76  NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLT 118
           NL+ L L+   I  +    L  L NL  +DLS N +T +  L+
Sbjct: 2   NLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSPLS 42

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + LD+S N+L  LPK     + L NL  L L+   I  +    ++ L+ L E+DLS+N +
Sbjct: 166 KNLDLSFNDLSDLPKL---LSNLSNLNNLDLSGNKISDL-PPEIELLSALEELDLSNNSI 221

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
             + S +  +++ L  L L+ N +  + +     +  L  LD+S +++  IS        
Sbjct: 222 IELLS-SLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNNQISSISSLG--SLT 277

Query: 172 SLESIKLNGNRLSHFP 187
           +L  + L+GN LS+  
Sbjct: 278 NLRELDLSGNSLSNAL 293

Length = 394

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 8/86 (9%)

Query: 270 ENATVVCRVDSIPPAAISW--YWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ 327
           E A+  C V   PP  I+W    +G+  L          + V   G+      LV+ NAQ
Sbjct: 2   ETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQ------LVIYNAQ 55

Query: 328 ESDSGRFYCVAENRAGIADANFTLQV 353
             D+G + C A N  G+  ANF L V
Sbjct: 56  PQDAGLYTCTARNSGGLLRANFPLSV 81

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 12/78 (15%)

Query: 276 CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY 335
           C+  + P    SW     LL+NN+      RI + + G      SL + N  + D G + 
Sbjct: 8   CKPKAAPKPKFSWSKGTELLVNNS------RISIWDDG------SLEILNITKLDEGSYT 55

Query: 336 CVAENRAGIADANFTLQV 353
           C AEN  G A++   L V
Sbjct: 56  CFAENNRGKANSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 20/90 (22%)

Query: 260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
           D+ + E       ++ CR    PP    W      L+N T          I+     R S
Sbjct: 10  DTIFPEESDEGKVSLNCRARGSPPPTYRW------LMNGTE---------IDDEPDSRYS 54

Query: 320 ----SLVLTNAQES-DSGRFYCVAENRAGI 344
               +LV++N  ++ D+GR+ C+A N  G 
Sbjct: 55  LVGGNLVISNPSKAKDAGRYQCLASNIVGT 84

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 99  TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIE 139
           TNL  +DLS+N +T +P L   ++  L  L+L+ N I+ + 
Sbjct: 1   TNLETLDLSNNQITDLPPL--SNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 276 CRVDSIPPAAISWY-WNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF 334
           C  + +P   ISW    G L  + T F ++ +             +L + N  E D G +
Sbjct: 5   CIAEGLPTPEISWIKIGGELPADRTKFENFNK-------------TLKIDNVSEEDDGEY 51

Query: 335 YCVAENRAGIADANFTLQV 353
            C A N  G A    ++ V
Sbjct: 52  RCTASNSLGSARHTISVTV 70

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143176 cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 282 PPAAISWYWNGRLLLNNTAFSSYQRIFV--IEQGEYERKSSLVLTNAQESDSGRFYCVAE 339
           PP  I+W ++ R L N           V    + EY   S L L   +ES++G +  +A 
Sbjct: 32  PPPHINWTYDNRTLTNK------LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLAS 85

Query: 340 NRAGIADANFTLQVTY 355
           N        F L V  
Sbjct: 86  NSDASKSLTFELYVNV 101

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta, binds only to PDGF-B. In mice, PDGFR alpha, and PDGFR beta, are essential for normal development. Length = 101

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 12/81 (14%)

Query: 264 VEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
            +    E A + C      P   +SW  +G+ L         +R+ +++ G      +L+
Sbjct: 6   TQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLN-----LDNERVRIVDDG------NLL 54

Query: 323 LTNAQESDSGRFYCVAENRAG 343
           +  A++SD G + CVA N  G
Sbjct: 55  IAEARKSDEGTYKCVATNMVG 75

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143180 cd04979, Ig_Semaphorin_C, Immunoglobulin (Ig)-like domain of semaphorin

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 12/72 (16%)

Query: 270 ENATVV--CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ 327
           E  +V   C   S   A++ W + G  L          R+ V E G       L++ +  
Sbjct: 10  EGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEE--RLLVTEDG-------LLIRSVS 59

Query: 328 ESDSGRFYCVAE 339
            +D+G + C + 
Sbjct: 60  PADAGVYTCQSV 71

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. Length = 89

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 28/78 (35%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 276 CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY 335
           CRV +IPP  I W  N  +L  NT      RI  + Q    R   L++ NA + D+G + 
Sbjct: 5   CRVSAIPPPQIFWKKNNEMLTYNT-----DRI-SLYQDNCGR-ICLLIQNANKEDAGWYT 57

Query: 336 CVAENRAGIADANFTLQV 353
             A N AG+   N  L V
Sbjct: 58  VSAVNEAGVVSCNARLDV 75

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 14/81 (17%)

Query: 276 CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYE---RKSSLVLTNAQESDSG 332
           C     P   + W  NG+       F    RI     G Y+   +  SL++ +   SD G
Sbjct: 16  CPAAGNPTPTMRWLKNGK------EFKQEHRI-----GGYKVRNQHWSLIMESVVPSDKG 64

Query: 333 RFYCVAENRAGIADANFTLQV 353
            + CV EN  G  +  + L V
Sbjct: 65  NYTCVVENEYGSINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 281 IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN 340
            P   ++W  +G+ L  +           IE       +SLV+ NA+ SDSG++    +N
Sbjct: 11  RPTPTVTWSKDGKPLKLSGRVQ-------IETTAS--STSLVIKNAERSDSGKYTLTLKN 61

Query: 341 RAGIADANFTLQV 353
            AG   A   ++V
Sbjct: 62  PAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           Q+L ++ N       ++F       L+ L L+R          L  L+ L+++ LS+N L
Sbjct: 455 QMLSLARNKFFGGLPDSFGSK---RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL 511

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
           +        S + L  L+L+ N +S     +F  +P L +LD+S+++L    P+     +
Sbjct: 512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571

Query: 172 SLESIKLNGNRL 183
           SL  + ++ N L
Sbjct: 572 SLVQVNISHNHL 583

Length = 968

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
           E A + C+V+ IP   I+W  NG  +               +   +    +L+LT+ Q S
Sbjct: 2   ETARLDCQVEGIPTPNITWSINGAPIEGTDP----------DPRRHVSSGALILTDVQPS 51

Query: 330 DSGRFYCVAENRAGIADANFTLQV 353
           D+  + C A NR G   AN  + V
Sbjct: 52  DTAVYQCEARNRHGNLLANAHVHV 75

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 48/199 (24%), Positives = 71/199 (35%), Gaps = 36/199 (18%)

Query: 35  RDKFLITIPEAPESELT--------QVLDMSGNNLQIL---PKEAFRRAGLLNLQKLFLA 83
                  IP   +S L         Q LD+S N L        E+  R+   +LQ+L L 
Sbjct: 59  SLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSS--SLQELKLN 116

Query: 84  RCHIGQIDSGAL--DGLT----NLIEIDLSDNLLTSIP----SLTFQSVRFLRDLNLARN 133
              +G      L   GL      L ++ L  N L        +   ++ R L++LNLA N
Sbjct: 117 NNGLG-DRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175

Query: 134 PISKIEKG------AFQFVPGLVKLDMSESRLEHISPEAFTGA----KSLESIKLNGNRL 183
            I   + G        +    L  LD++ + L      A        KSLE + L  N L
Sbjct: 176 GIG--DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233

Query: 184 SHFPVRSVEPLLKLMMIEL 202
           +     ++   L    I L
Sbjct: 234 TDAGAAALASALLSPNISL 252

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|143300 cd05892, Ig_Myotilin_C, C-terminal immunoglobulin (Ig)-like domain of myotilin

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 7/78 (8%)

Query: 276 CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY 335
           C++ +IPP  I W  N  ++  NT      RI + +  +   + +L++ N  + D+G + 
Sbjct: 5   CQISAIPPPKIFWKRNNEMVQYNT-----DRISLYQ--DNSGRVTLLIKNVNKKDAGWYT 57

Query: 336 CVAENRAGIADANFTLQV 353
             A N AG+A  +  L V
Sbjct: 58  VSAVNEAGVATCHARLDV 75

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. Length = 75

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 8/86 (9%)

Query: 271 NATVVCRVDSIPPAAISWYWNGR--LLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE 328
             T  C     P  AI W   G   LL +     S  R  V + G+      L +TN Q 
Sbjct: 3   TVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGD------LTITNVQR 56

Query: 329 SDSGRFYCVAENRAGIADANFTLQVT 354
           SD G + C   N AG       L+VT
Sbjct: 57  SDVGYYICQTLNVAGSILTKAYLEVT 82

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 13/78 (16%)

Query: 276 CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY 335
           C+    P  A  W  NG+ L      +S  RI V E G+      L +T    SDSG + 
Sbjct: 21  CKASGNPRPAYRWLKNGQPL------ASENRIEV-EAGD------LRITKLSLSDSGMYQ 67

Query: 336 CVAENRAGIADANFTLQV 353
           CVAEN+ G   A+  L V
Sbjct: 68  CVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 21/85 (24%), Positives = 27/85 (31%), Gaps = 19/85 (22%)

Query: 272 ATVVCRVDSIPPAAISWYWN-GRLLLNNTAFSSYQRIFVIEQGEYE--RKSSLVLTNAQE 328
               C V   P   + W    G L                  G  E     SL + N   
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPK----------------GRAEILDDKSLKIRNVTA 44

Query: 329 SDSGRFYCVAENRAGIADANFTLQV 353
            D G + C AEN  G  +A+ +L V
Sbjct: 45  GDEGSYTCEAENMVGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 114 IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSL 173
           IP+     +R L+ +NL+ N I      +   +  L  LD+S +      PE+     SL
Sbjct: 434 IPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492

Query: 174 ESIKLNGNRLS 184
             + LNGN LS
Sbjct: 493 RILNLNGNSLS 503

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	600
KOG4194|consensus	873		100.0
KOG4237|consensus	498		99.97
KOG4194|consensus	873		99.9
KOG4237|consensus	498		99.69
KOG0617|consensus	264		99.5
KOG0444|consensus	1255		99.46
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.45
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.43
KOG0617|consensus	264		99.4
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.39
KOG0444|consensus	1255		99.36
KOG0618|consensus	1081		99.31
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.3
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.3
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.29
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.29
KOG0472|consensus	565		99.28
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.27
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.27
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.26
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.26
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.26
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.26
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.26
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.24
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.24
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.24
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.23
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.23
KOG0472|consensus	565		99.21
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.21
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.21
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.21
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.21
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.2
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.2
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.2
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.2
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.19
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.19
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.18
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.18
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.18
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.18
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.17
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.17
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.17
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.16
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.16
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.14
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.14
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.13
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.13
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.13
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.13
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.11
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.1
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.1
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.1
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.09
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.09
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.09
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.09
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.08
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.08
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.08
KOG0618|consensus	1081		99.06
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.06
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.05
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.05
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.05
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.04
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.03
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.02
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.02
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.01
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.01
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.01
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.0
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.0
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.0
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.0
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.97
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.97
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.96
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.93
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.93
KOG1259|consensus	490		98.91
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.91
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.9
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.9
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.89
KOG1259|consensus	490		98.88
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.86
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.83
KOG0532|consensus	722		98.82
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.81
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.81
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.79
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.78
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.78
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.74
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.68
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.67
KOG0532|consensus	722		98.66
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.66
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.64
KOG3513|consensus	1051		98.64
PLN03150	623	hypothetical protein; Provisional	98.62
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.6
PLN03150	623	hypothetical protein; Provisional	98.6
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.59
KOG1859|consensus	1096		98.59
KOG3513|consensus	1051		98.58
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.57
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.56
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.55
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.54
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.53
KOG3207|consensus	505		98.53
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.5
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.47
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.47
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.45
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.42
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.42
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.39
KOG0531|consensus	414		98.38
KOG1644|consensus	233		98.37
KOG3207|consensus	505		98.35
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.35
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.34
smart00409	86	IG Immunoglobulin.	98.33
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.33
KOG4579|consensus	177		98.33
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.31
KOG4221|consensus	1381		98.3
KOG0531|consensus	414		98.3
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.29
PHA02785	326	IL-beta-binding protein; Provisional	98.27
KOG1644|consensus	233		98.24
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.23
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.18
KOG1859|consensus	1096		98.16
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.13
KOG4658|consensus	889		98.13
PHA02826	227	IL-1 receptor-like protein; Provisional	98.1
KOG4579|consensus	177		98.09
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.09
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.08
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.07
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.05
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.97
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.95
KOG1909|consensus	382		97.94
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.93
PHA02826	227	IL-1 receptor-like protein; Provisional	97.89
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.88
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	97.87
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	97.87
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	97.86
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.85
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.85
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	97.8
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.8
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.76
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.75
PHA02785	326	IL-beta-binding protein; Provisional	97.73
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.72
KOG4658|consensus	889		97.71
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.67
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.66
KOG4221|consensus	1381		97.66
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.65
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.65
KOG1909|consensus	382		97.64
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.63
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.62
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.61
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.61
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.6
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.59
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.58
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.52
KOG4222|consensus	1281		97.48
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	97.47
KOG2982|consensus	418		97.42
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.4
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.4
KOG3665|consensus	699		97.38
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.37
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.37
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.33
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.32
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.3
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.29
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.27
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.13
KOG2982|consensus	418		97.1
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.08
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.08
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.03
smart00407	75	IGc1 Immunoglobulin C-Type.	96.99
PRK15386	426	type III secretion protein GogB; Provisional	96.99
KOG2123|consensus	388		96.98
PHA02987	189	Ig domain OX-2-like protein; Provisional	96.96
PRK15386	426	type III secretion protein GogB; Provisional	96.96
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	96.94
KOG2739|consensus	260		96.9
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	96.9
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	96.85
KOG2739|consensus	260		96.83
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	96.81
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	96.79
KOG4222|consensus	1281		96.73
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	96.7
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.67
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	96.56
KOG3665|consensus	699		96.55
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	96.52
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	96.48
KOG2120|consensus	419		96.43
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	96.38
KOG2123|consensus	388		96.36
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	96.35
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	96.31
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.26
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.23
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.16
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.16
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.15
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	95.94
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	95.94
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	95.91
smart00406	81	IGv Immunoglobulin V-Type.	95.9
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	95.9
PHA03376	221	BARF1; Provisional	95.82
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	95.8
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	95.79
KOG1026|consensus	774		95.59
cd05770	93	IgC_beta2m Class I major histocompatibility comple	95.59
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	95.45
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	95.08
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	95.07
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	94.6
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	94.47
KOG4597|consensus	560		94.46
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	94.33
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	94.09
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.05
PHA02633	63	hypothetical protein; Provisional	93.98
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	93.86
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	93.21
KOG2120|consensus	419		92.91
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.47
smart00370	26	LRR Leucine-rich repeats, outliers.	92.47
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.21
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.75
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	91.33
KOG1480|consensus	909		91.03
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	90.5
PF06365	202	CD34_antigen: CD34/Podocalyxin family; InterPro: I	90.41
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	90.32
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.2
smart00370	26	LRR Leucine-rich repeats, outliers.	90.2
PF14991	118	MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P	89.95
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	89.6
PHA03042	286	CD47-like protein; Provisional	89.49
KOG0473|consensus	326		89.3
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	89.18
KOG0473|consensus	326		88.21
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	87.99
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	87.69
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	87.5
PHA03286	492	envelope glycoprotein E; Provisional	86.95
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	86.93
PHA02982	251	hypothetical protein; Provisional	86.91
KOG3515|consensus	741		86.62
PF15050	133	SCIMP: SCIMP protein	83.61
KOG3515|consensus	741		83.4
KOG3864|consensus	221		82.3
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	81.11

>KOG4194|consensus

Probab=100.00  E-value=6.6e-35  Score=301.52  Aligned_cols=302  Identities=26%  Similarity=0.447  Sum_probs=205.9

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      |+.|+|+.|.|..|..+.+.  ..++|++|+|++|+|+.+++++|..|..|++|+|++|.|..+..+.|..+.+|++|+|
T Consensus       295 L~~L~lS~NaI~rih~d~Ws--ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL  372 (873)
T KOG4194|consen  295 LEQLDLSYNAIQRIHIDSWS--FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL  372 (873)
T ss_pred             hhhhccchhhhheeecchhh--hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence            45555555555554444443  3455555555555555555555555555555555555555555555555666666666


Q ss_pred             cCCCCCccCc---ccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcC
Q psy1672         131 ARNPISKIEK---GAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       131 s~N~i~~l~~---~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~  207 (600)
                      ++|.+.....   .+|.+|++|+.|.|.+|+|+.|+..+|.++++|++|+|.+|.|.++.+..|+.+ .|+.|.+..-.|
T Consensus       373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            6665543322   346666667777777777777777777777777777777777777777777776 677777777778


Q ss_pred             ccccccccchhhhcccCCCC--CCCCCCCCccccccccccccccccCc----ccccccccccccccccccceeeeEeec-
Q psy1672         208 VCDCNMRSIKMWLADKKNVP--VQPACTGPERLSGKVFSDLHADDFAC----KPEIRMDSRYVEAVSSENATVVCRVDS-  280 (600)
Q Consensus       208 ~C~C~l~~l~~w~~~~~~~~--~~~~C~~p~~l~g~~l~~l~~~~~~C----~p~i~~~~~~~~v~~G~~v~L~C~v~g-  280 (600)
                      .|||.+.|+.+|+.+ ....  ....|+.|..+.++.+..++..+|.|    +|.+...+..+.+..|.+++++|.+.+ 
T Consensus       452 lCDCql~Wl~qWl~~-~~lq~sv~a~CayPe~Lad~~i~svd~~~lvC~DspkpqI~~qPe~~~al~g~nirftC~a~ss  530 (873)
T KOG4194|consen  452 LCDCQLKWLAQWLYR-RKLQSSVIAKCAYPEPLADQSIVSVDTANLVCDDSPKPQIVTQPETVSALIGENIRFTCNAYSS  530 (873)
T ss_pred             EEeccHHHHHHHHHh-cccccceeeeccCCcccccceeEeechhhceecCCCCcceecCchHhhhhhccceEEEEEeccC
Confidence            899999999999984 3333  45689999999999999999999999    577788888888999999999999986 


Q ss_pred             -CCCCeeEEEEcCeeccCCcccCccceE-EEeeCC----ceeeeeeEEEecCCCCCCeEEEEEEecCCCce-eEEEEEEE
Q psy1672         281 -IPPAAISWYWNGRLLLNNTAFSSYQRI-FVIEQG----EYERKSSLVLTNAQESDSGRFYCVAENRAGIA-DANFTLQV  353 (600)
Q Consensus       281 -~P~p~i~W~~~g~~l~~~~~~~~~~~~-~~~~~g----~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~-~~~v~L~V  353 (600)
                       ..+-.+.|-+++..+...... .+-.+ ....+|    ..+..+.|.+.||+..|.|.|+|++.|.+|+. +..+.+.|
T Consensus       531 sasplsi~WR~dnevq~rv~ve-d~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV  609 (873)
T KOG4194|consen  531 SASPLSIEWRKDNEVQPRVDVE-DFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTV  609 (873)
T ss_pred             CCCCceeEeeeccccCcccchh-cchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCcchhheeEEEe
Confidence             445589999976643322110 00000 001111    12356789999999999999999999999987 44566766


Q ss_pred             EEcc
Q psy1672         354 TYRG  357 (600)
Q Consensus       354 ~~~~  357 (600)
                      ...|
T Consensus       610 ~~~P  613 (873)
T KOG4194|consen  610 NQAP  613 (873)
T ss_pred             eccC
Confidence            5443

>KOG4237|consensus

Probab=99.97  E-value=6.9e-32  Score=268.48  Aligned_cols=239  Identities=31%  Similarity=0.560  Sum_probs=211.3

Q ss_pred             hhcCCCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCccc
Q psy1672          11 VVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI   90 (600)
Q Consensus        11 ~~~~~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i   90 (600)
                      .++...||.+|.|...+ ..+|+|+.++|++||..+|.+ +..|+|..|+|+.||+.+|.  .+++|+.|+|++|+|+.|
T Consensus        31 ~~~~~~CP~pC~Cs~~~-g~~VdCr~~GL~eVP~~LP~~-tveirLdqN~I~~iP~~aF~--~l~~LRrLdLS~N~Is~I  106 (498)
T KOG4237|consen   31 AHSASACPAPCTCSDVE-GGIVDCRGKGLTEVPANLPPE-TVEIRLDQNQISSIPPGAFK--TLHRLRRLDLSKNNISFI  106 (498)
T ss_pred             hhccccCCCCcccCCCC-CceEEccCCCcccCcccCCCc-ceEEEeccCCcccCChhhcc--chhhhceecccccchhhc
Confidence            34467999999999876 678999999999999999998 99999999999999999998  899999999999999999


Q ss_pred             CccccCCCCCccEEEccC-CCCCCCCcccc--------------------------------------------------
Q psy1672          91 DSGALDGLTNLIEIDLSD-NLLTSIPSLTF--------------------------------------------------  119 (600)
Q Consensus        91 ~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~f--------------------------------------------------  119 (600)
                      .+++|.+++.|..|-+-+ |+|+.++.+.|                                                  
T Consensus       107 ~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~  186 (498)
T KOG4237|consen  107 APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQG  186 (498)
T ss_pred             ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccc
Confidence            999999998887766554 77666555333                                                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy1672         120 --------------------------------------------------------------------------------  119 (600)
Q Consensus       120 --------------------------------------------------------------------------------  119 (600)
                                                                                                      
T Consensus       187 l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP  266 (498)
T KOG4237|consen  187 LAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICP  266 (498)
T ss_pred             hhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcCh
Confidence                                                                                            


Q ss_pred             ----CCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccc
Q psy1672         120 ----QSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL  195 (600)
Q Consensus       120 ----~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  195 (600)
                          ..+++|+.|+|++|+|+.+.+.+|.++..+++|.|..|+|..+....|.++..|+.|+|.+|+|+.+.+..|..+.
T Consensus       267 ~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  267 AKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             HHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence                3567788888888888888888888888888888888888888888888999999999999999999999999999


Q ss_pred             cccEEEccCCcCccccccccchhhhcccCCCCCCCCCCCCccccccccccccccccCcc
Q psy1672         196 KLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACK  254 (600)
Q Consensus       196 ~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~~~C~  254 (600)
                      .|..|++-.|||.|+|++.|+..|+..+. ......|..|..+++..++++...+|.|.
T Consensus       347 ~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~-~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~  404 (498)
T KOG4237|consen  347 SLSTLNLLSNPFNCNCRLAWLGEWLRKKS-VVGNPRCQSPGFVRQIPISDVAFGDFRCG  404 (498)
T ss_pred             eeeeeehccCcccCccchHHHHHHHhhCC-CCCCCCCCCCchhccccchhccccccccC
Confidence            99999999999999999999999999544 55788999999999999999999999996

>KOG4194|consensus

Probab=99.90  E-value=9.5e-25  Score=226.60  Aligned_cols=296  Identities=25%  Similarity=0.411  Sum_probs=214.6

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCC---CccccCCCCCCCE
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSI---PSLTFQSVRFLRD  127 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l---~~~~f~~l~~L~~  127 (600)
                      |++|+|++|+|+.+++..|.  .|..|+.|+|++|.+..|...+|.++.+|+.|||++|.|...   ....|.+|++|+.
T Consensus       319 L~~LdLs~N~i~~l~~~sf~--~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk  396 (873)
T KOG4194|consen  319 LKELDLSSNRITRLDEGSFR--VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK  396 (873)
T ss_pred             ceeEeccccccccCChhHHH--HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence            99999999999999999998  899999999999999999999999999999999999988732   3346888999999


Q ss_pred             EEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcC------CCcCCCCCc---------ccc-
Q psy1672         128 LNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLN------GNRLSHFPV---------RSV-  191 (600)
Q Consensus       128 L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls------~N~l~~l~~---------~~~-  191 (600)
                      |.|.+|++..++..+|.++.+|++|+|.+|.|..|.+++|..+ .|+.|.+.      +|+|.-+..         ... 
T Consensus       397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a  475 (873)
T KOG4194|consen  397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIA  475 (873)
T ss_pred             eeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceee
Confidence            9999999999999999999999999999999999999999988 88887764      344432210         000 


Q ss_pred             -----cccccccEEEccCCcCccccccc------------------------------cc-hhhhcccCCCC-----CCC
Q psy1672         192 -----EPLLKLMMIELHDNPWVCDCNMR------------------------------SI-KMWLADKKNVP-----VQP  230 (600)
Q Consensus       192 -----~~l~~L~~L~l~~N~~~C~C~l~------------------------------~l-~~w~~~~~~~~-----~~~  230 (600)
                           +.+.....+.++.-.++|+-..+                              ++ ..|-.++...+     ...
T Consensus       476 ~CayPe~Lad~~i~svd~~~lvC~DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a  555 (873)
T KOG4194|consen  476 KCAYPEPLADQSIVSVDTANLVCDDSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFA  555 (873)
T ss_pred             eccCCcccccceeEeechhhceecCCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcch
Confidence                 01112223334444455542221                              11 34544332221     000


Q ss_pred             CCCC-------------CccccccccccccccccCc--------------------ccccccccccccccccccceeeeE
Q psy1672         231 ACTG-------------PERLSGKVFSDLHADDFAC--------------------KPEIRMDSRYVEAVSSENATVVCR  277 (600)
Q Consensus       231 ~C~~-------------p~~l~g~~l~~l~~~~~~C--------------------~p~i~~~~~~~~v~~G~~v~L~C~  277 (600)
                      +-..             ...+.-.++.-.+...+.|                    .|.+...+..++...|+.+.|.|.
T Consensus       556 ~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~Ca  635 (873)
T KOG4194|consen  556 TFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECA  635 (873)
T ss_pred             hhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeee
Confidence            0000             0011111222223334445                    366666788888999999999999


Q ss_pred             eecCCCCeeEEEEcCee-ccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEEEEEEc
Q psy1672         278 VDSIPPAAISWYWNGRL-LLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       278 v~g~P~p~i~W~~~g~~-l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      +.|.|.|+|.|.++|.. .....    ..|+++..+++     .+.|.|++.+|.|.|+|+|.|.+|..+++++|.|.+.
T Consensus       636 AtG~P~PeIawqkdggtdFPAA~----eRRl~Vmpedd-----~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~  706 (873)
T KOG4194|consen  636 ATGHPRPEIAWQKDGGTDFPAAR----ERRLHVMPEDD-----VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLET  706 (873)
T ss_pred             ccCCCCcceeehhcCCCCCchhh----hheeeecCCCC-----EEEEecccccccceeEEeeeccccceeeceEEEEecC
Confidence            99999999999997643 22221    23455544332     5789999999999999999999999999999999877


Q ss_pred             cC
Q psy1672         357 GV  358 (600)
Q Consensus       357 ~~  358 (600)
                      |.
T Consensus       707 p~  708 (873)
T KOG4194|consen  707 PS  708 (873)
T ss_pred             Cc
Confidence            53

>KOG4237|consensus

Probab=99.69  E-value=1.2e-18  Score=174.40  Aligned_cols=198  Identities=26%  Similarity=0.396  Sum_probs=176.3

Q ss_pred             eEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEcc
Q psy1672          52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLA  131 (600)
Q Consensus        52 ~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls  131 (600)
                      -..+-++-.|++||.+.     -..-..|+|..|+|+.|++++|..+++|+.||||+|+|+.|.+.+|+++.+|..|.+-
T Consensus        49 ~~VdCr~~GL~eVP~~L-----P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvly  123 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANL-----PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLY  123 (498)
T ss_pred             ceEEccCCCcccCcccC-----CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhh
Confidence            45677888899999775     3477899999999999999999999999999999999999999999999998887766


Q ss_pred             C-CCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCccc
Q psy1672         132 R-NPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCD  210 (600)
Q Consensus       132 ~-N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~  210 (600)
                      + |+|+.++.++|.++..|+.|.+.-|++.++..++|..+++|..|.+.+|.+..+....|..+..++.+.+..|++.|+
T Consensus       124 g~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd  203 (498)
T KOG4237|consen  124 GNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD  203 (498)
T ss_pred             cCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence            5 999999999999999999999999999999999999999999999999999999998999999999999999999999


Q ss_pred             cccccchhhhcccCCCCCCCCCCCCccccccccccccccccCcc
Q psy1672         211 CNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACK  254 (600)
Q Consensus       211 C~l~~l~~w~~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~~~C~  254 (600)
                      |.+.|+...+....-...-..|..|.++..+.+..++...|.|.
T Consensus       204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~  247 (498)
T KOG4237|consen  204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS  247 (498)
T ss_pred             cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh
Confidence            99999877665332222446788999888888888888777775

>KOG0617|consensus

Probab=99.50  E-value=8.2e-16  Score=137.98  Aligned_cols=164  Identities=23%  Similarity=0.340  Sum_probs=143.1

Q ss_pred             CCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCcc
Q psy1672          38 FLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSL  117 (600)
Q Consensus        38 ~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~  117 (600)
                      ...++|..+..++++.|-|++|+++.+|+.+-   .+.+|+.|++.+|+|+.++.. ++.+++|++|++..|++..+|. 
T Consensus        22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia---~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lpr-   96 (264)
T KOG0617|consen   22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIA---ELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPR-   96 (264)
T ss_pred             cHhhcccccchhhhhhhhcccCceeecCCcHH---HhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCcc-
Confidence            34567777777889999999999999999876   699999999999999999665 8999999999999999998887 


Q ss_pred             ccCCCCCCCEEEccCCCCCc-cCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCccccccccc
Q psy1672         118 TFQSVRFLRDLNLARNPISK-IEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK  196 (600)
Q Consensus       118 ~f~~l~~L~~L~Ls~N~i~~-l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  196 (600)
                      .|+.++.|+.|+|.+|.+.. ..++.|..+..|+-|+|+.|.+.-+++ .++++.+|+.|.+.+|.+-+++. .+..+..
T Consensus        97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~lpk-eig~lt~  174 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLSLPK-EIGDLTR  174 (264)
T ss_pred             ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhhCcH-HHHHHHH
Confidence            69999999999999998764 335667788999999999999998855 57889999999999999999984 5688889


Q ss_pred             ccEEEccCCcCc
Q psy1672         197 LMMIELHDNPWV  208 (600)
Q Consensus       197 L~~L~l~~N~~~  208 (600)
                      |+.|.+.+|.+.
T Consensus       175 lrelhiqgnrl~  186 (264)
T KOG0617|consen  175 LRELHIQGNRLT  186 (264)
T ss_pred             HHHHhcccceee
Confidence            999999999754

>KOG0444|consensus

Probab=99.46  E-value=7.4e-15  Score=154.33  Aligned_cols=186  Identities=21%  Similarity=0.318  Sum_probs=93.2

Q ss_pred             EEEccCCCCCccCCCCCC-CCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCC
Q psy1672          31 WMECRDKFLITIPEAPES-ELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN  109 (600)
Q Consensus        31 ~v~C~~~~L~~ip~~~~~-~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N  109 (600)
                      +++.++++|+++|..+.. .++-+|+|++|+|..||...|.  ++..|-.|+|++|++..++|. +..|..|+.|+|++|
T Consensus       107 ~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi--nLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  107 ILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFI--NLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNN  183 (1255)
T ss_pred             eeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHH--hhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCC
Confidence            344444444444443321 2244455555555555554444  444455555555555444443 344444444444444


Q ss_pred             CCCCCCccccCCCCCCCEEEccCCCCC-ccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         110 LLTSIPSLTFQSVRFLRDLNLARNPIS-KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       110 ~l~~l~~~~f~~l~~L~~L~Ls~N~i~-~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      .+....-..+..+.+|++|.+++.+-+ .-.+..+..+.+|..++|+.|.+..+ |+.+.++.+|+.|+|++|+|+.+..
T Consensus       184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~iteL~~  262 (1255)
T KOG0444|consen  184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKITELNM  262 (1255)
T ss_pred             hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCceeeeec
Confidence            333211111222333333333332211 11133445566677777777777766 5566677777777777777777653


Q ss_pred             ccccccccccEEEccCCcCc----cccccccchhhhc
Q psy1672         189 RSVEPLLKLMMIELHDNPWV----CDCNMRSIKMWLA  221 (600)
Q Consensus       189 ~~~~~l~~L~~L~l~~N~~~----C~C~l~~l~~w~~  221 (600)
                       ......+|++|+++.|+++    |-|.+..+...+.
T Consensus       263 -~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~  298 (1255)
T KOG0444|consen  263 -TEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYA  298 (1255)
T ss_pred             -cHHHHhhhhhhccccchhccchHHHhhhHHHHHHHh
Confidence             2233456667777777664    4566655544433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.45  E-value=3.4e-13  Score=160.75  Aligned_cols=133  Identities=24%  Similarity=0.199  Sum_probs=66.3

Q ss_pred             CCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCccee
Q psy1672          73 GLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL  152 (600)
Q Consensus        73 ~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L  152 (600)
                      .+.+|+.|+|++|.+....+..|.++++|++|+|++|.+....+..|..+.+|++|+|++|.+....+..|..+++|+.|
T Consensus       162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  241 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL  241 (968)
T ss_pred             cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence            45555555555555544444445555555555555555554333345555555555555555544444444555555555


Q ss_pred             eCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCC
Q psy1672         153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN  205 (600)
Q Consensus       153 ~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N  205 (600)
                      +|++|.+....+..+.++.+|+.|+|++|.+....+..+..+.+|+.|++.+|
T Consensus       242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence            55555554444444444555555555555444332233333444444444444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.43  E-value=5.1e-13  Score=159.28  Aligned_cols=157  Identities=21%  Similarity=0.209  Sum_probs=103.5

Q ss_pred             CceEEEeeCCCCC-CCChhhhcccCCCCccEEEeecccCc----------------------ccCccccCCCCCccEEEc
Q psy1672          50 LTQVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHIG----------------------QIDSGALDGLTNLIEIDL  106 (600)
Q Consensus        50 ~l~~L~Ls~n~L~-~l~~~~f~~~~l~~L~~L~L~~n~l~----------------------~i~~~~f~~l~~L~~L~L  106 (600)
                      .++.|+|++|++. .+|...|.  .+.+|++|+|++|.+.                      ...+..|..+++|++|+|
T Consensus        94 ~L~~L~Ls~n~~~~~ip~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  171 (968)
T PLN00113         94 YIQTINLSNNQLSGPIPDDIFT--TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL  171 (968)
T ss_pred             CCCEEECCCCccCCcCChHHhc--cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEEC
Confidence            4888888888886 67777664  4666666666666554                      333444556666666666


Q ss_pred             cCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCC
Q psy1672         107 SDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF  186 (600)
Q Consensus       107 s~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  186 (600)
                      ++|.+....+..|..+++|++|+|++|.+....+..|..+++|+.|+|++|.+....+..+.++++|+.|+|++|.+...
T Consensus       172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  251 (968)
T PLN00113        172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP  251 (968)
T ss_pred             ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence            66666544444566666666666666666655555566666777777777776665566677777777777777777655


Q ss_pred             CcccccccccccEEEccCCcCc
Q psy1672         187 PVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       187 ~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      .+..+..+++|+.|++.+|.+.
T Consensus       252 ~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        252 IPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             cChhHhCCCCCCEEECcCCeee
Confidence            5566777777888888777643

>KOG0617|consensus

Probab=99.40  E-value=5.8e-15  Score=132.56  Aligned_cols=170  Identities=23%  Similarity=0.384  Sum_probs=141.0

Q ss_pred             EEccCCCCCccCCCCCC-CCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCC
Q psy1672          32 MECRDKFLITIPEAPES-ELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL  110 (600)
Q Consensus        32 v~C~~~~L~~ip~~~~~-~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~  110 (600)
                      +..++++++.+|+.+-. .++++|+|.+|+|+++|.++.   .+++|+.|++.-|++..++ ..|+.++.|+.|||+.|+
T Consensus        38 LtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~is---sl~klr~lnvgmnrl~~lp-rgfgs~p~levldltynn  113 (264)
T KOG0617|consen   38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS---SLPKLRILNVGMNRLNILP-RGFGSFPALEVLDLTYNN  113 (264)
T ss_pred             hhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhh---hchhhhheecchhhhhcCc-cccCCCchhhhhhccccc
Confidence            44567889999886543 459999999999999999887   5999999999999998775 459999999999999999


Q ss_pred             CC--CCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         111 LT--SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       111 l~--~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      +.  .+|. .|..+..|+.|+|++|.+.-++++ ..++++|+.|.+..|.+-.+ |..++.+..|+.|++.+|+++.+++
T Consensus       114 l~e~~lpg-nff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  114 LNENSLPG-NFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             cccccCCc-chhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccceeeecCh
Confidence            87  4555 566788999999999999888665 68999999999999999998 5668889999999999999999986


Q ss_pred             cccccc---ccccEEEccCCcCcc
Q psy1672         189 RSVEPL---LKLMMIELHDNPWVC  209 (600)
Q Consensus       189 ~~~~~l---~~L~~L~l~~N~~~C  209 (600)
                      + +..+   .+-.++.++.|||.-
T Consensus       191 e-l~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  191 E-LANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             h-hhhhhhhhhHHHHhhhhCCCCC
Confidence            4 2222   223456678888863

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.39  E-value=3.6e-12  Score=108.21  Aligned_cols=94  Identities=19%  Similarity=0.296  Sum_probs=77.4

Q ss_pred             ccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      .+...+..+.+..|+.+.|.|.+.|.|++.+.|+++++.+....      ++.+...+   ..+.|.|.++...|+|.|+
T Consensus         2 ~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~------~~~~~~~~---~~s~L~I~~~~~~D~G~Yt   72 (98)
T cd05762           2 QIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGE------GIKIENTE---NSSKLTITEGQQEHCGCYT   72 (98)
T ss_pred             ceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCC------cEEEEecC---CeeEEEECCCChhhCEEEE
Confidence            44555677888999999999999999999999999999886433      23333222   2358999999999999999


Q ss_pred             EEEecCCCceeEEEEEEEEEccC
Q psy1672         336 CVAENRAGIADANFTLQVTYRGV  358 (600)
Q Consensus       336 C~a~N~~G~~~~~v~L~V~~~~~  358 (600)
                      |.|+|..|.+.+++.|.|..++.
T Consensus        73 c~a~N~~G~~~~~~~l~V~~~P~   95 (98)
T cd05762          73 LEVENKLGSRQAQVNLTVVDKPD   95 (98)
T ss_pred             EEEEcCCCceeEEEEEEEecCCC
Confidence            99999999999999999987654

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>KOG0444|consensus

Probab=99.36  E-value=8.7e-14  Score=146.40  Aligned_cols=162  Identities=27%  Similarity=0.379  Sum_probs=109.7

Q ss_pred             ccCCCCCC-CCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCcccc
Q psy1672          41 TIPEAPES-ELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTF  119 (600)
Q Consensus        41 ~ip~~~~~-~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f  119 (600)
                      .||..+.. ..+.+|||++|+|.++|...-   ...++-.|+|++|+|..|+...|.+|..|-+||||+|++..+|+ ..
T Consensus        94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE---~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~  169 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHNQLREVPTNLE---YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP-QI  169 (1255)
T ss_pred             CCCchhcccccceeeecchhhhhhcchhhh---hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH-HH
Confidence            34544332 336667777777777666543   35666677777777777766666677777777777777777766 34


Q ss_pred             CCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCc--CcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccc
Q psy1672         120 QSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR--LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKL  197 (600)
Q Consensus       120 ~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~--l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  197 (600)
                      ..+..|++|.|++|++...--..+-.+++|+.|.+++.+  +..+ |..+..+.+|..+||+.|.|+.+| +.+-++.+|
T Consensus       170 RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~-Ptsld~l~NL~dvDlS~N~Lp~vP-ecly~l~~L  247 (1255)
T KOG0444|consen  170 RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNI-PTSLDDLHNLRDVDLSENNLPIVP-ECLYKLRNL  247 (1255)
T ss_pred             HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcC-CCchhhhhhhhhccccccCCCcch-HHHhhhhhh
Confidence            556667777777776654332333344556666666653  3344 456777889999999999999998 577888999


Q ss_pred             cEEEccCCcCc
Q psy1672         198 MMIELHDNPWV  208 (600)
Q Consensus       198 ~~L~l~~N~~~  208 (600)
                      +.|+|++|.+.
T Consensus       248 rrLNLS~N~it  258 (1255)
T KOG0444|consen  248 RRLNLSGNKIT  258 (1255)
T ss_pred             heeccCcCcee
Confidence            99999999865

>KOG0618|consensus

Probab=99.31  E-value=9.2e-14  Score=152.67  Aligned_cols=185  Identities=23%  Similarity=0.257  Sum_probs=146.3

Q ss_pred             CCCCeecccCCceEEEccCCCCCccCCCCC-CCCceEEEeeCCCCCCCChhhhcc-----------------------cC
Q psy1672          18 PSTCICKWKGGKQWMECRDKFLITIPEAPE-SELTQVLDMSGNNLQILPKEAFRR-----------------------AG   73 (600)
Q Consensus        18 p~~C~C~~~~~~~~v~C~~~~L~~ip~~~~-~~~l~~L~Ls~n~L~~l~~~~f~~-----------------------~~   73 (600)
                      |..|.|.|.-  ..+.|....+..+|.... .+.+++|+|..|+|..+|+..|..                       ..
T Consensus       280 p~ri~~~~~L--~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~  357 (1081)
T KOG0618|consen  280 PLRISRITSL--VSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN  357 (1081)
T ss_pred             HHHHhhhhhH--HHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence            3455555432  446778888999988665 455999999999999888765542                       12


Q ss_pred             CCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceee
Q psy1672          74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLD  153 (600)
Q Consensus        74 l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~  153 (600)
                      +..|+.|++.+|.++.---..|.++++|+.|+|++|+|.++|...+.+++.|++|+|++|+++.++ .....+..|++|.
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLR  436 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHh
Confidence            335666777777776543445788899999999999999999999999999999999999999986 6678889999999


Q ss_pred             CCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcC
Q psy1672         154 MSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       154 Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~  207 (600)
                      ..+|+|..++  .+..++.|+.+|++.|.|+.+.......-++|++|++.+|.+
T Consensus       437 ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  437 AHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hcCCceeech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            9999999985  577899999999999999976543333337899999999985

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.30  E-value=9.3e-12  Score=99.47  Aligned_cols=73  Identities=33%  Similarity=0.567  Sum_probs=61.4

Q ss_pred             cccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEE
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN  348 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~  348 (600)
                      |+.+.|.|.+.|.|.|+|.|++++..+...      .++.+..++      .|.|.+++.+|.|.|+|.|+|..|.++.+
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~------~r~~~~~~g------~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   68 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNN------SRISIWDDG------SLEILNITKLDEGSYTCFAENNRGKANST   68 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccC------CCEEEcCCC------EEEECcCChhHCEEEEEEEECCCCceeEE
Confidence            678999999999999999999988766432      244444444      79999999999999999999999999988


Q ss_pred             EEEEE
Q psy1672         349 FTLQV  353 (600)
Q Consensus       349 v~L~V  353 (600)
                      +.|.|
T Consensus        69 ~~l~~   73 (73)
T cd05852          69 GVLSV   73 (73)
T ss_pred             EEEEC
Confidence            88764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.30  E-value=1.5e-11  Score=99.34  Aligned_cols=77  Identities=21%  Similarity=0.350  Sum_probs=60.1

Q ss_pred             eeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEEE
Q psy1672         273 TVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQ  352 (600)
Q Consensus       273 ~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L~  352 (600)
                      .+.|.+.|.|.|+|+|+++|+.+....    .....+...+.....+.|.|.+++..|.|.|+|+|+|..|.+++++.++
T Consensus         2 ~i~~~v~G~P~Pti~W~kng~~l~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEGAILNESE----YICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             eEEEEEeEeCCCceEEEECCEECCCCc----ceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            367999999999999999999886543    1112222222223457899999999999999999999999999998886


Q ss_pred             E
Q psy1672         353 V  353 (600)
Q Consensus       353 V  353 (600)
                      +
T Consensus        78 f   78 (79)
T cd05855          78 F   78 (79)
T ss_pred             c
Confidence            5

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.29  E-value=1.1e-11  Score=99.35  Aligned_cols=74  Identities=23%  Similarity=0.441  Sum_probs=61.1

Q ss_pred             ccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeE
Q psy1672         268 SSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADA  347 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~  347 (600)
                      +|+.+.|.|.+.|.|.|.|.|++++..+....      +..+..+      +.|.|.+++..|.|.|+|.|.|.+|..+.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~------~~~~~~~------~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   68 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDR------RHLVLSS------GTLRISRVALHDQGQYECQAVNIVGSQRT   68 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCC------CeEEccC------CeEEEeeCCHHhCEEEEEEEEeCCCceeE
Confidence            58899999999999999999999988765322      2222222      37999999999999999999999999998


Q ss_pred             EEEEEE
Q psy1672         348 NFTLQV  353 (600)
Q Consensus       348 ~v~L~V  353 (600)
                      .+.|.|
T Consensus        69 ~~~L~V   74 (74)
T cd05745          69 VAQLTV   74 (74)
T ss_pred             EEEEeC
Confidence            887764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.29  E-value=2.2e-11  Score=101.25  Aligned_cols=86  Identities=24%  Similarity=0.313  Sum_probs=69.6

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+........+..|+.+.|.|.+.|.|.|.+.|++++..+....      ++.  ..+     +.|.|.+++.+|.|.|
T Consensus         2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~------~~~--~~~-----~~L~I~~v~~~D~G~Y   68 (88)
T cd05851           2 ADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATA------EIS--MSG-----AVLKIFNIQPEDEGTY   68 (88)
T ss_pred             CceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCC------EEe--cCC-----CEEEECcCChhhCEEE
Confidence            455566677788899999999999999999999999887554321      221  111     3799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V  353 (600)
                      +|.|.|..|.....+.|.|
T Consensus        69 ~C~A~N~~G~~~~~~~l~V   87 (88)
T cd05851          69 ECEAENIKGKDKHQARVYV   87 (88)
T ss_pred             EEEEEcCCCceEEEEEEEE
Confidence            9999999999998888876

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>KOG0472|consensus

Probab=99.28  E-value=9.6e-14  Score=139.70  Aligned_cols=165  Identities=25%  Similarity=0.451  Sum_probs=122.9

Q ss_pred             cCCCCCccCCCCCC-CCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCC
Q psy1672          35 RDKFLITIPEAPES-ELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTS  113 (600)
Q Consensus        35 ~~~~L~~ip~~~~~-~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~  113 (600)
                      .++++.++|..+.. ..+..|++.+|++..+++...   .++.|++|+...|-++.++++ ++++.+|..|+|.+|.|..
T Consensus       145 ~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i---~m~~L~~ld~~~N~L~tlP~~-lg~l~~L~~LyL~~Nki~~  220 (565)
T KOG0472|consen  145 TNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI---AMKRLKHLDCNSNLLETLPPE-LGGLESLELLYLRRNKIRF  220 (565)
T ss_pred             cccccccCchHHHHHHHHHHhhccccchhhCCHHHH---HHHHHHhcccchhhhhcCChh-hcchhhhHHHHhhhccccc
Confidence            34555555554322 125556677777777666655   367777777777777777654 6777777778888888887


Q ss_pred             CCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccc
Q psy1672         114 IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP  193 (600)
Q Consensus       114 l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~  193 (600)
                      +|.  |.++..|.+|+++.|.|..++.....++.+|..|||..|+++.. |+.++.+.+|.+||+++|.|+.++. .+++
T Consensus       221 lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL~rLDlSNN~is~Lp~-sLgn  296 (565)
T KOG0472|consen  221 LPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSLERLDLSNNDISSLPY-SLGN  296 (565)
T ss_pred             CCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC-chHHHHhhhhhhhcccCCccccCCc-cccc
Confidence            773  77777788888888888878777777888899999999999988 4556678889999999999999885 4677


Q ss_pred             cccccEEEccCCcCc
Q psy1672         194 LLKLMMIELHDNPWV  208 (600)
Q Consensus       194 l~~L~~L~l~~N~~~  208 (600)
                      + .|+.|.+.+||+.
T Consensus       297 l-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  297 L-HLKFLALEGNPLR  310 (565)
T ss_pred             c-eeeehhhcCCchH
Confidence            7 8888999999854

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.27  E-value=3.6e-11  Score=99.40  Aligned_cols=84  Identities=18%  Similarity=0.309  Sum_probs=68.0

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..+.+..|+.+.|.|.+.|.|.|.+.|+++++.+....     .++.+...+   ..+.|.|.++..+|+|.|+|.|.|.
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~-----~r~~~~~~~---~~~~L~I~~~~~~D~G~Y~c~a~N~   74 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETE-----GRVRVESYK---DLSSFVIEGAEREDEGVYTITVTNP   74 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCC-----CeEEEEEcC---CeEEEEECCCccCcCEEEEEEEEeC
Confidence            35677899999999999999999999999998876431     233333222   2458999999999999999999999


Q ss_pred             CCceeEEEEEEE
Q psy1672         342 AGIADANFTLQV  353 (600)
Q Consensus       342 ~G~~~~~v~L~V  353 (600)
                      .|.+++++.|.|
T Consensus        75 ~G~~~~~~~l~V   86 (86)
T cd05894          75 VGEDHASLFVKV   86 (86)
T ss_pred             CCcEEEEEEEEC
Confidence            999998887764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.27  E-value=3.4e-11  Score=96.70  Aligned_cols=75  Identities=29%  Similarity=0.573  Sum_probs=59.9

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL  351 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L  351 (600)
                      +.|.|.+.|.|.|.|.|+++++.+....     .++.+..++.  ....|.|.+++.+|.|.|+|.|.|..|.+...+.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~-----~r~~~~~~~~--g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L   73 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNT-----DRISLYQDNS--GRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARL   73 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCC-----CeEEEEEcCC--CcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEE
Confidence            5799999999999999999998876322     2444443321  12379999999999999999999999999988887


Q ss_pred             EE
Q psy1672         352 QV  353 (600)
Q Consensus       352 ~V  353 (600)
                      .|
T Consensus        74 ~V   75 (75)
T cd05892          74 DV   75 (75)
T ss_pred             eC
Confidence            64

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.26  E-value=4.1e-11  Score=100.49  Aligned_cols=89  Identities=28%  Similarity=0.514  Sum_probs=71.9

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+..|+.+.|.|.+.|.|.|.+.|+++++.+....      ++.+...+   ..+.|.|.+++.+|+|.
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~------~~~~~~~~---~~~~L~i~~~~~~D~G~   73 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQ------RHQITSTE---YKSTFEISKVQMSDEGN   73 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCC------cEEEEEcC---CeeEEEECCCCcccCEe
Confidence            3556666778889999999999999999999999999988765322      33333222   24689999999999999


Q ss_pred             EEEEEecCCCceeEEEEE
Q psy1672         334 FYCVAENRAGIADANFTL  351 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L  351 (600)
                      |+|.|+|..|.++..+.|
T Consensus        74 Y~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          74 YTVVVENSEGKQEAQFTL   91 (92)
T ss_pred             EEEEEEcCCCCEeEEEEe
Confidence            999999999998887765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.26  E-value=3.7e-11  Score=102.33  Aligned_cols=87  Identities=29%  Similarity=0.447  Sum_probs=69.5

Q ss_pred             ccccccccccceeeeEeec-CCCCeeEEEEcCeeccCCcccCccceEEEeeC--CceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         262 RYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ--GEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~--g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      ..+++.+|+.+.|.|.+.| .|+|.+.|+++|..+....      +..+...  ......+.|.|..+..+|.|.|+|.|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~------~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A   84 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKL------TEIVTSENESEYRYVSELKLVRLKESEAGTYTFLA   84 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCc------ceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEE
Confidence            4677889999999999999 8999999999999886432      1111111  11223568999999999999999999


Q ss_pred             ecCCCceeEEEEEEEE
Q psy1672         339 ENRAGIADANFTLQVT  354 (600)
Q Consensus       339 ~N~~G~~~~~v~L~V~  354 (600)
                      +|..|.++..+.|.|.
T Consensus        85 ~N~~G~~~~t~~L~V~  100 (101)
T cd04975          85 SNSDASKSLTFELYVN  100 (101)
T ss_pred             ECCCccEEEEEEEEEE
Confidence            9999999998888873

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.26  E-value=3.9e-11  Score=101.67  Aligned_cols=95  Identities=26%  Similarity=0.382  Sum_probs=69.6

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.|...+....+..|+.++|.|.+.|.|.|.++|+++++.+...... ...++.+.+..   ..+.|.|.+++.+|.|.|
T Consensus         3 p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~-~~~~~~v~~~~---~~~~L~I~~v~~~D~G~Y   78 (97)
T cd05869           3 PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKT-LDGHIVVRSHA---RVSSLTLKYIQYTDAGEY   78 (97)
T ss_pred             ceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccc-cCccEEEEcCc---cEEEEEEecCccCcCEEE
Confidence            44444444445556899999999999999999999988766432211 11233332222   236899999999999999


Q ss_pred             EEEEecCCCceeEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V  353 (600)
                      +|.|.|.+|.+++++.|.|
T Consensus        79 ~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          79 LCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEecCCCCeeEEEEEEC
Confidence            9999999999998888764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.26  E-value=3.7e-11  Score=100.75  Aligned_cols=84  Identities=24%  Similarity=0.380  Sum_probs=68.0

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeC-CceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ-GEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~-g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      +..+++.+|+.+.|.|.+.|.|.|++.|+++++.+....      +..+... +   ..+.|.|.+++.+|+|.|+|.|+
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~------~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~   78 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSD------HYNVKVEQG---KYASLTIKGVSSEDSGKYGIVVK   78 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCC------CEEEEEcCC---CEEEEEEccCChhhCEEEEEEEE
Confidence            456788899999999999999999999999998875432      2223222 2   12479999999999999999999


Q ss_pred             cCCCceeEEEEEEE
Q psy1672         340 NRAGIADANFTLQV  353 (600)
Q Consensus       340 N~~G~~~~~v~L~V  353 (600)
                      |..|.++..+.+.|
T Consensus        79 N~~G~~~~~~~v~v   92 (92)
T cd05737          79 NKYGGETVDVTVSV   92 (92)
T ss_pred             ECCCcceEEEEEeC
Confidence            99999988887764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.26  E-value=2.4e-11  Score=137.23  Aligned_cols=143  Identities=22%  Similarity=0.326  Sum_probs=98.8

Q ss_pred             CeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCC
Q psy1672          21 CICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTN  100 (600)
Q Consensus        21 C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~  100 (600)
                      |.|-.. +...++|...+|+.+|..++.. ++.|++.+|+|+.+|.      .+++|+.|+|++|+|+.++.    ..++
T Consensus       196 ~~Cl~~-~~~~LdLs~~~LtsLP~~l~~~-L~~L~L~~N~Lt~LP~------lp~~Lk~LdLs~N~LtsLP~----lp~s  263 (788)
T PRK15387        196 RACLNN-GNAVLNVGESGLTTLPDCLPAH-ITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV----LPPG  263 (788)
T ss_pred             HHHhcC-CCcEEEcCCCCCCcCCcchhcC-CCEEEccCCcCCCCCC------CCCCCcEEEecCCccCcccC----cccc
Confidence            445432 2567999999999999987765 9999999999999885      36799999999999998853    2457


Q ss_pred             ccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCC
Q psy1672         101 LIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNG  180 (600)
Q Consensus       101 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~  180 (600)
                      |+.|+|++|.|+.++. .   ..+|+.|+|++|+++.++.    .+++|+.|+|++|+|+.++. .   ..+|+.|++++
T Consensus       264 L~~L~Ls~N~L~~Lp~-l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~-l---p~~L~~L~Ls~  331 (788)
T PRK15387        264 LLELSIFSNPLTHLPA-L---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA-L---PSELCKLWAYN  331 (788)
T ss_pred             cceeeccCCchhhhhh-c---hhhcCEEECcCCccccccc----cccccceeECCCCccccCCC-C---ccccccccccc
Confidence            7888888888777665 2   2456677777777766543    23567777777777666532 1   12344444444


Q ss_pred             CcCCCCC
Q psy1672         181 NRLSHFP  187 (600)
Q Consensus       181 N~l~~l~  187 (600)
                      |.|..++
T Consensus       332 N~L~~LP  338 (788)
T PRK15387        332 NQLTSLP  338 (788)
T ss_pred             Ccccccc
Confidence            5444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.24  E-value=2e-11  Score=138.46  Aligned_cols=159  Identities=21%  Similarity=0.282  Sum_probs=114.4

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      ...+.+.+.+++.+|..++.. ++.|+|++|+|+.+|...+     .+|+.|+|++|+|+.++.. +  ..+|+.|+|++
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip~~-L~~L~Ls~N~LtsLP~~l~-----~nL~~L~Ls~N~LtsLP~~-l--~~~L~~L~Ls~  250 (754)
T PRK15370        180 KTELRLKILGLTTIPACIPEQ-ITTLILDNNELKSLPENLQ-----GNIKTLYANSNQLTSIPAT-L--PDTIQEMELSI  250 (754)
T ss_pred             ceEEEeCCCCcCcCCcccccC-CcEEEecCCCCCcCChhhc-----cCCCEEECCCCccccCChh-h--hccccEEECcC
Confidence            567888888999999877766 9999999999999997654     4899999999999888653 2  24788889999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      |.|+.+|....   .+|+.|+|++|.++.++...+   .+|+.|+|++|+|+.++.. +  ..+|+.|+|++|.+..++.
T Consensus       251 N~L~~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP~  321 (754)
T PRK15370        251 NRITELPERLP---SALQSLDLFHNKISCLPENLP---EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTALPE  321 (754)
T ss_pred             CccCcCChhHh---CCCCEEECcCCccCccccccC---CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCccccCCc
Confidence            98888876432   468888888888887754322   4788888888888877432 2  1345666666666666553


Q ss_pred             ccccccccccEEEccCCcCc
Q psy1672         189 RSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       189 ~~~~~l~~L~~L~l~~N~~~  208 (600)
                      ...   ++|+.|++.+|.+.
T Consensus       322 ~l~---~sL~~L~Ls~N~Lt  338 (754)
T PRK15370        322 TLP---PGLKTLEAGENALT  338 (754)
T ss_pred             ccc---ccceeccccCCccc
Confidence            221   34555555555544

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.24  E-value=6.2e-11  Score=95.59  Aligned_cols=75  Identities=33%  Similarity=0.546  Sum_probs=61.2

Q ss_pred             cccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEE
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN  348 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~  348 (600)
                      |+.+.|.|.+.|.|.|+++|+++|..+.....   ..+.. ..+      +.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~---~~~~~-~~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   70 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDP---DPRRH-VSS------GALILTDVQPSDTAVYQCEARNRHGNLLAN   70 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCC---CceEE-eeC------CEEEECCCChhhCEEEEEEEECCCCeEEEE
Confidence            67899999999999999999999987754321   11222 222      379999999999999999999999999998


Q ss_pred             EEEEE
Q psy1672         349 FTLQV  353 (600)
Q Consensus       349 v~L~V  353 (600)
                      +.|+|
T Consensus        71 ~~l~V   75 (76)
T cd05867          71 AHVHV   75 (76)
T ss_pred             EEEEE
Confidence            88877

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.24  E-value=3.4e-11  Score=94.20  Aligned_cols=66  Identities=23%  Similarity=0.480  Sum_probs=56.2

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL  351 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L  351 (600)
                      ++|.|.+.|.|.|.++|+++|+.+....                 ..+.|.|.++..+|+|.|+|+|+|..|..++++.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-----------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~   63 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH-----------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISL   63 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC-----------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEE
Confidence            4789999999999999999998875211                 12479999999999999999999999988888877


Q ss_pred             EEE
Q psy1672         352 QVT  354 (600)
Q Consensus       352 ~V~  354 (600)
                      .+.
T Consensus        64 ~l~   66 (67)
T cd05863          64 ELI   66 (67)
T ss_pred             EEE
Confidence            763

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.23  E-value=1e-10  Score=97.17  Aligned_cols=83  Identities=25%  Similarity=0.348  Sum_probs=65.7

Q ss_pred             cccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEe--eCCceeeeeeEEEecCCCCCCeEEEEEEecCCCcee
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI--EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD  346 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~--~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~  346 (600)
                      |+.++|.|.+.|.|++.+.|.++++.+....     .+..+.  ..+ ....+.|.|.++..+|+|.|+|.|.|..|..+
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~-----~r~~~~~~~~~-~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~   74 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEM-----SRYLVSTKEVG-DEVISTLQILPTVREDSGFFSCHAINSYGEDR   74 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCC-----CcEEEEEecCC-CcEEEEEEECCCCcccCEEEEEEEEcCCCcce
Confidence            6789999999999999999999998764321     122222  122 13346899999999999999999999999999


Q ss_pred             EEEEEEEEEcc
Q psy1672         347 ANFTLQVTYRG  357 (600)
Q Consensus       347 ~~v~L~V~~~~  357 (600)
                      ..+.|.|...+
T Consensus        75 ~~~~L~V~~~P   85 (88)
T cd05735          75 GIIQLTVQEPP   85 (88)
T ss_pred             EEEEEEEeCCC
Confidence            99999997543

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.23  E-value=5.6e-12  Score=117.73  Aligned_cols=107  Identities=28%  Similarity=0.458  Sum_probs=22.6

Q ss_pred             CCCccEEEeecccCcccCccccC-CCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCccee
Q psy1672          74 LLNLQKLFLARCHIGQIDSGALD-GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL  152 (600)
Q Consensus        74 l~~L~~L~L~~n~l~~i~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L  152 (600)
                      ..+++.|+|++|.|..|..  +. .+.+|+.|+|++|.|+.+..  +..+++|++|++++|.|+.+.......+++|+.|
T Consensus        18 ~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ------------------S----TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccccc--hhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            3345555555555555432  22 34455555555555555442  4444555555555555554432211234444445


Q ss_pred             eCCCCcCcccCh-hhhcCCCCCCEEEcCCCcCC
Q psy1672         153 DMSESRLEHISP-EAFTGAKSLESIKLNGNRLS  184 (600)
Q Consensus       153 ~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~N~l~  184 (600)
                      +|++|+|..+.. ..+..+++|+.|+|.+|.+.
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            554444443321 22233344444444444433

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.23  E-value=6.6e-11  Score=94.09  Aligned_cols=71  Identities=24%  Similarity=0.507  Sum_probs=57.8

Q ss_pred             cceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEE
Q psy1672         271 NATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFT  350 (600)
Q Consensus       271 ~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~  350 (600)
                      ++.|.|.+.|.|.|.+.|++++..+....      +..+..++      .|.|.+++.+|.|.|+|.|.|..|..++++.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~------~~~~~~~~------~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~   68 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSD------YFKIVKEH------NLQVLGLVKSDEGFYQCIAENDVGNVQASAQ   68 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCC------CEEEEecC------CEEEEcCCcccCEEEEEEEEcCCCEEEEEEE
Confidence            36899999999999999999988765322      33333333      5788899999999999999999999998888


Q ss_pred             EEE
Q psy1672         351 LQV  353 (600)
Q Consensus       351 L~V  353 (600)
                      |.|
T Consensus        69 L~V   71 (71)
T cd05723          69 LII   71 (71)
T ss_pred             EEC
Confidence            764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.23  E-value=5.9e-12  Score=117.60  Aligned_cols=138  Identities=22%  Similarity=0.286  Sum_probs=54.1

Q ss_pred             cCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCC
Q psy1672          35 RDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSI  114 (600)
Q Consensus        35 ~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l  114 (600)
                      +...+.+++.......+++|+|++|.|+.|..-..   .+.+|+.|+|++|.|+.+..  |..+++|+.|++++|.|+++
T Consensus         5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~---~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i   79 (175)
T PF14580_consen    5 TANMIEQIAQYNNPVKLRELNLRGNQISTIENLGA---TLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSI   79 (175)
T ss_dssp             -------------------------------S--T---T-TT--EEE-TTS--S--TT------TT--EEE--SS---S-
T ss_pred             cccccccccccccccccccccccccccccccchhh---hhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCcc
Confidence            34445566665555458999999999998864322   47899999999999999964  88999999999999999999


Q ss_pred             CccccCCCCCCCEEEccCCCCCccCc-ccccCCCCcceeeCCCCcCcccCh---hhhcCCCCCCEEE
Q psy1672         115 PSLTFQSVRFLRDLNLARNPISKIEK-GAFQFVPGLVKLDMSESRLEHISP---EAFTGAKSLESIK  177 (600)
Q Consensus       115 ~~~~f~~l~~L~~L~Ls~N~i~~l~~-~~~~~l~~L~~L~Ls~n~l~~i~~---~~~~~l~~L~~L~  177 (600)
                      .......+++|+.|+|++|+|..+.. ..+..+++|+.|+|.+|.+.....   ..+..+++|+.||
T Consensus        80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            76433468999999999999987654 457789999999999999876532   2345677777766

>KOG0472|consensus

Probab=99.21  E-value=2.7e-13  Score=136.50  Aligned_cols=169  Identities=24%  Similarity=0.363  Sum_probs=135.8

Q ss_pred             EEccCCCCCccCCCCCC-CCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCC
Q psy1672          32 MECRDKFLITIPEAPES-ELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL  110 (600)
Q Consensus        32 v~C~~~~L~~ip~~~~~-~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~  110 (600)
                      .+|....+.++|..+.. ..+..|+..+|++..+|.+.+   .+.+|..|++.+|++..+++..+. ++.|++||...|.
T Consensus       119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~---~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~  194 (565)
T KOG0472|consen  119 LDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMV---NLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNL  194 (565)
T ss_pred             hhccccceeecCchHHHHhhhhhhhccccccccCchHHH---HHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhh
Confidence            44556666666655432 236777778888888888777   477888888888888888777555 8899999999999


Q ss_pred             CCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCccc
Q psy1672         111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRS  190 (600)
Q Consensus       111 l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  190 (600)
                      ++.+|+ .++.+.+|..|+|..|+|..++  .|.++..|.+|+++.|+|.-++.+...++.+|..|||.+|++++.|.+ 
T Consensus       195 L~tlP~-~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde-  270 (565)
T KOG0472|consen  195 LETLPP-ELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE-  270 (565)
T ss_pred             hhcCCh-hhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH-
Confidence            999988 4778888999999999998886  588888899999999999988888888899999999999999999854 


Q ss_pred             ccccccccEEEccCCcCc
Q psy1672         191 VEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       191 ~~~l~~L~~L~l~~N~~~  208 (600)
                      +..+.+|..||+++|.+.
T Consensus       271 ~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  271 ICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             HHHhhhhhhhcccCCccc
Confidence            456677888999998754

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.21  E-value=1.2e-10  Score=98.31  Aligned_cols=84  Identities=24%  Similarity=0.478  Sum_probs=68.2

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ....+..|+.+.|.|.+.|.|.|.+.|+++|..+....     .+.....++     +.|.|.+++.+|.|.|+|.|+|.
T Consensus        11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~-----~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N~   80 (95)
T cd05730          11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGE-----EKYSFNEDG-----SEMTILDVDKLDEAEYTCIAENK   80 (95)
T ss_pred             cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCC-----CEEEEeCCC-----CEEEECCCChhhCEEEEEEEEcC
Confidence            34567899999999999999999999999998775431     122222222     46999999999999999999999


Q ss_pred             CCceeEEEEEEEEE
Q psy1672         342 AGIADANFTLQVTY  355 (600)
Q Consensus       342 ~G~~~~~v~L~V~~  355 (600)
                      .|..+..+.|.|..
T Consensus        81 ~G~~~~~~~L~V~~   94 (95)
T cd05730          81 AGEQEAEIHLKVFA   94 (95)
T ss_pred             CCeEEEEEEEEEEe
Confidence            99999999998853

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.21  E-value=8.6e-11  Score=94.77  Aligned_cols=75  Identities=28%  Similarity=0.482  Sum_probs=60.3

Q ss_pred             cccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEE
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN  348 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~  348 (600)
                      |+.++|.|.+.|.|.|+|.|+++|+.+.....    ...... ++     +.|.|.+++..|.|.|+|.|+|..|...++
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~----~~~~~~-~~-----~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~   70 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPT----DPSRKV-DG-----DTIIFSKVQERSSAVYQCNASNEYGYLLAN   70 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCC----CceEEe-cC-----CEEEECCCCHhhCEEEEEEEEcCCCEEEEE
Confidence            67899999999999999999999988753221    111111 22     268899999999999999999999999999


Q ss_pred             EEEEE
Q psy1672         349 FTLQV  353 (600)
Q Consensus       349 v~L~V  353 (600)
                      +.|.|
T Consensus        71 ~~l~v   75 (76)
T cd05868          71 AFVNV   75 (76)
T ss_pred             EEEEe
Confidence            98876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.21  E-value=4.6e-11  Score=134.97  Aligned_cols=99  Identities=27%  Similarity=0.354  Sum_probs=54.8

Q ss_pred             CccEEEccCCCCCCCCccccCC-----------------CCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCccc
Q psy1672         100 NLIEIDLSDNLLTSIPSLTFQS-----------------VRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI  162 (600)
Q Consensus       100 ~L~~L~Ls~N~l~~l~~~~f~~-----------------l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i  162 (600)
                      +|++|+|++|+|+.+|.. +..                 ..+|+.|+|++|.|+.++..    ..+|+.|++++|.|+.+
T Consensus       343 ~Lq~LdLS~N~Ls~LP~l-p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssI  417 (788)
T PRK15387        343 GLQELSVSDNQLASLPTL-PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSL  417 (788)
T ss_pred             ccceEecCCCccCCCCCC-CcccceehhhccccccCcccccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCC
Confidence            566666666666665531 110                 12345555555555544321    23455566666666555


Q ss_pred             ChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         163 SPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       163 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      +. .   ..+|+.|+|++|+|+.+|. .+..+..|..|++++|+|.
T Consensus       418 P~-l---~~~L~~L~Ls~NqLt~LP~-sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        418 PM-L---PSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             Cc-c---hhhhhhhhhccCcccccCh-HHhhccCCCeEECCCCCCC
Confidence            32 1   2345666666666666653 3556677777777777765

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.21  E-value=9e-11  Score=94.27  Aligned_cols=75  Identities=28%  Similarity=0.464  Sum_probs=59.5

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL  351 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L  351 (600)
                      +.|.|.+.|.|.|.|.|++++..+....     .++.+..++.  ....|.|.+++.+|.|.|+|.|.|..|..+.++.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~-----~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L   73 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNT-----DRVSMHQDNC--GYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARL   73 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCC-----CeEEEEEcCC--CEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEE
Confidence            5799999999999999999998775322     2444433321  12369999999999999999999999999988877


Q ss_pred             EE
Q psy1672         352 QV  353 (600)
Q Consensus       352 ~V  353 (600)
                      .|
T Consensus        74 ~V   75 (75)
T cd05893          74 DV   75 (75)
T ss_pred             eC
Confidence            64

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.20  E-value=4.5e-11  Score=135.61  Aligned_cols=118  Identities=20%  Similarity=0.267  Sum_probs=77.8

Q ss_pred             eEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCC
Q psy1672          30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN  109 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N  109 (600)
                      ..++..+++++.+|..+... |++|+|++|+|+.+|...+     .+|+.|+|++|.+..++.. +  ..+|+.|+|++|
T Consensus       202 ~~L~Ls~N~LtsLP~~l~~n-L~~L~Ls~N~LtsLP~~l~-----~~L~~L~Ls~N~L~~LP~~-l--~s~L~~L~Ls~N  272 (754)
T PRK15370        202 TTLILDNNELKSLPENLQGN-IKTLYANSNQLTSIPATLP-----DTIQEMELSINRITELPER-L--PSALQSLDLFHN  272 (754)
T ss_pred             cEEEecCCCCCcCChhhccC-CCEEECCCCccccCChhhh-----ccccEEECcCCccCcCChh-H--hCCCCEEECcCC
Confidence            45677777888888766654 8888888888888876543     3677888888887777543 2  246777788877


Q ss_pred             CCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCccc
Q psy1672         110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI  162 (600)
Q Consensus       110 ~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i  162 (600)
                      +|+.+|...+   .+|+.|+|++|.++.++....   .+|+.|++++|.+..+
T Consensus       273 ~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp---~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        273 KISCLPENLP---EELRYLSVYDNSIRTLPAHLP---SGITHLNVQSNSLTAL  319 (754)
T ss_pred             ccCccccccC---CCCcEEECCCCccccCcccch---hhHHHHHhcCCccccC
Confidence            7777765322   367777777777776643211   2445555555555544

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.20  E-value=7.8e-11  Score=94.17  Aligned_cols=73  Identities=34%  Similarity=0.581  Sum_probs=60.8

Q ss_pred             cccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEE
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN  348 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~  348 (600)
                      |+.+.|.|.+.|.|.|.+.|+++++.+...      .++.+..++      .|.|.+++..|.|.|+|.|.|..|..+.+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~------~~~~~~~~~------~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   68 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNS------SRICIWPDG------SLEILNVTKSDEGKYTCFAENFFGKANST   68 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccC------CCEEECCCC------eEEEccCChhHCEEEEEEEECCCCceEEE
Confidence            678999999999999999999998876532      234443333      79999999999999999999999999988


Q ss_pred             EEEEE
Q psy1672         349 FTLQV  353 (600)
Q Consensus       349 v~L~V  353 (600)
                      +.|.|
T Consensus        69 ~~l~V   73 (73)
T cd04969          69 GSLSV   73 (73)
T ss_pred             EEEEC
Confidence            88764

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.20  E-value=1.2e-10  Score=95.00  Aligned_cols=77  Identities=22%  Similarity=0.388  Sum_probs=59.7

Q ss_pred             eeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeC--CceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEE
Q psy1672         273 TVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ--GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFT  350 (600)
Q Consensus       273 ~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~--g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~  350 (600)
                      .+.|.+.|.|.|+|+|+++|+.+....    .........  ......+.|.|.+++..|+|.|+|+|+|..|.+++++.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~----~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~   77 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESD----YIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSIS   77 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCC----ceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEE
Confidence            468999999999999999999886543    111222211  12234568999999999999999999999999999888


Q ss_pred             EEE
Q psy1672         351 LQV  353 (600)
Q Consensus       351 L~V  353 (600)
                      +++
T Consensus        78 ~~~   80 (81)
T cd04971          78 AHF   80 (81)
T ss_pred             eee
Confidence            875

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.20  E-value=1.3e-10  Score=98.04  Aligned_cols=87  Identities=30%  Similarity=0.487  Sum_probs=66.6

Q ss_pred             ccccccccccccceeeeEeecCCC-CeeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEE
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPP-AAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCV  337 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~-p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~  337 (600)
                      .+....+..|+.++|.|.+.|.|. |.+.|++ ++..+....     .++.+..++.  ..+.|.|.+++.+|+|.|+|.
T Consensus         6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~-----~r~~v~~~~~--~~~~L~I~~v~~~D~G~YtC~   78 (96)
T cd05865           6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQ-----QRISVVRNDD--YSSTLTIYNANIDDAGIYKCV   78 (96)
T ss_pred             eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccC-----CeEEEEeCCC--CceEEEEeccChhhCEEEEEE
Confidence            345567888999999999999995 7999998 676554321     1333333321  246899999999999999999


Q ss_pred             EecCC-CceeEEEEEEE
Q psy1672         338 AENRA-GIADANFTLQV  353 (600)
Q Consensus       338 a~N~~-G~~~~~v~L~V  353 (600)
                      |.|.+ |..++++.|.|
T Consensus        79 A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          79 VSNEDEGESEATVNVKI   95 (96)
T ss_pred             EEcCCCCcEEEEEEEEE
Confidence            99997 88888888765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.19  E-value=9.4e-11  Score=99.93  Aligned_cols=87  Identities=31%  Similarity=0.434  Sum_probs=68.4

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeC--CceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ--GEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~--g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      ..++..|..+.|.|.+.|.|+|.+.|+++|+.+.....     .......  ......+.|.|.+++.+|+|.|+|.|.|
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~-----~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N   86 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLT-----EITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQN   86 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcc-----eEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEc
Confidence            45677899999999999999999999999998875431     1111010  1123346899999999999999999999


Q ss_pred             CCCceeEEEEEEEE
Q psy1672         341 RAGIADANFTLQVT  354 (600)
Q Consensus       341 ~~G~~~~~v~L~V~  354 (600)
                      ..|.++.++.|.|.
T Consensus        87 ~~g~~~~t~~l~V~  100 (101)
T cd05859          87 EDAVKSYTFALQIQ  100 (101)
T ss_pred             CCceEEEEEEEEEE
Confidence            99999988888773

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.19  E-value=1.6e-10  Score=92.91  Aligned_cols=75  Identities=35%  Similarity=0.580  Sum_probs=59.5

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL  351 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L  351 (600)
                      ++|.|.+.|.|.|.|.|+++++.+....     .++.+..++.  ....|.|.+++.+|.|.|+|.|.|.+|.+...+.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~-----~r~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   73 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNT-----DRISLYQDNC--GRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARL   73 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCC-----CcEEEEEcCC--CeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEE
Confidence            5799999999999999999998875322     2344443321  12369999999999999999999999999988877


Q ss_pred             EE
Q psy1672         352 QV  353 (600)
Q Consensus       352 ~V  353 (600)
                      .|
T Consensus        74 ~v   75 (75)
T cd05744          74 DV   75 (75)
T ss_pred             eC
Confidence            64

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.18  E-value=1.6e-10  Score=95.27  Aligned_cols=81  Identities=27%  Similarity=0.342  Sum_probs=61.1

Q ss_pred             ccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeE
Q psy1672         270 ENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADA  347 (600)
Q Consensus       270 ~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~  347 (600)
                      ++++|.|.+.|.|.|  .+.|+++++.+.....   ..+.......  ...+.|+|.+++..|.|.|+|.|.|.+|..++
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~---~~~~~~~~~~--~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~   75 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKP---NGHYRRMEVK--ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASA   75 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCC---CCcEEEEEec--ceEeEEEEccCChhhCeEEEEEEecCCCCEEE
Confidence            468999999999987  5799999987754321   1111111100  12358999999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy1672         348 NFTLQVTY  355 (600)
Q Consensus       348 ~v~L~V~~  355 (600)
                      ++.|.|..
T Consensus        76 ~~~L~V~~   83 (85)
T cd05854          76 SATLVVRG   83 (85)
T ss_pred             EEEEEEEC
Confidence            99998854

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.18  E-value=1.2e-10  Score=97.16  Aligned_cols=84  Identities=19%  Similarity=0.309  Sum_probs=66.1

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +....+..|+.+.|.|.+.|.|.|.+.|++++..+....      ......   ....+.|.|.++..+|.|.|+|.|.|
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~------~~~~~~---~~~~~~L~I~~v~~~D~g~Y~C~A~N   77 (90)
T cd04972           7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTR------TDTLET---TVDIYNLQLSNITSETQTTVTCTAEN   77 (90)
T ss_pred             CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCc------cEEEEe---cCCEEEEEEecCCcccCEEEEEEEEC
Confidence            455668899999999999999999999999998764322      111111   11235799999999999999999999


Q ss_pred             CCCceeEEEEEEE
Q psy1672         341 RAGIADANFTLQV  353 (600)
Q Consensus       341 ~~G~~~~~v~L~V  353 (600)
                      ..|.+.+.+.|.|
T Consensus        78 ~~G~~~~~~~L~v   90 (90)
T cd04972          78 PVGQANVSVQVTV   90 (90)
T ss_pred             CCCceeEEEEEeC
Confidence            9999998887754

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.18  E-value=1.1e-10  Score=97.25  Aligned_cols=90  Identities=34%  Similarity=0.611  Sum_probs=74.0

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+..+.+..|+.++|.|.+.+.|.+++.|+++++.+....      +..+...+   ..+.|.|.+++..|.|.|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~------~~~~~~~~---~~~~L~I~~v~~~D~G~Y   71 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQ------RYQIESDG---GSSSLTIKNVTREDAGTY   71 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSS------SEEEEEET---TEEEEEESSESGGGSEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeee------eeeeeccc---ceeEEccCCCChhhCEEE
Confidence            345555678889999999999999999999999999998887633      33333332   346899999999999999


Q ss_pred             EEEEecCCCceeEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V  353 (600)
                      +|.|+|..|..++.+.|.|
T Consensus        72 ~C~~~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   72 TCVASNSSGEATASVNLTV   90 (90)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEC
Confidence            9999999999999888865

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.18  E-value=2.1e-10  Score=91.93  Aligned_cols=73  Identities=26%  Similarity=0.454  Sum_probs=59.3

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL  351 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L  351 (600)
                      +.|.|.+.|.|.|.+.|+++|+.+....      ++.+...+   ..+.|.|.+++..|+|.|+|.|.|..|.++..+.|
T Consensus         2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~------~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   72 (74)
T cd05748           2 VRLEVPISGRPTPTVTWSKDGKPLKLSG------RVQIETTA---SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINV   72 (74)
T ss_pred             EEEEeeEeeeCCCeEEEEECCEEcCCCC------eEEEEECC---CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEE
Confidence            6799999999999999999998874322      33333222   24589999999999999999999999999988887


Q ss_pred             EE
Q psy1672         352 QV  353 (600)
Q Consensus       352 ~V  353 (600)
                      .|
T Consensus        73 ~V   74 (74)
T cd05748          73 KV   74 (74)
T ss_pred             EC
Confidence            64

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.17  E-value=1.9e-10  Score=97.15  Aligned_cols=89  Identities=31%  Similarity=0.427  Sum_probs=67.4

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      .....+.+|+.+.|.|.+.|.|.|.+.|++++..+...... ...++.+....   ..+.|.|.+++.+|.|.|+|.|.|
T Consensus         8 ~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N   83 (96)
T cd05732           8 LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKS-LDGRIVVRGHA---RVSSLTLKDVQLTDAGRYDCEASN   83 (96)
T ss_pred             cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCcc-ccceEEEeCCc---cEEEEEECcCCcCcCEEeEEEEEe
Confidence            34567788999999999999999999999988655432211 11233332221   246899999999999999999999


Q ss_pred             CCCceeEEEEEEE
Q psy1672         341 RAGIADANFTLQV  353 (600)
Q Consensus       341 ~~G~~~~~v~L~V  353 (600)
                      ..|.++.++.|.|
T Consensus        84 ~~G~~~~s~~l~v   96 (96)
T cd05732          84 RIGGDQQSMYLEV   96 (96)
T ss_pred             CCCCcEEEEEEeC
Confidence            9999988887764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.17  E-value=1.6e-10  Score=92.97  Aligned_cols=75  Identities=27%  Similarity=0.426  Sum_probs=61.0

Q ss_pred             cccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEE
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN  348 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~  348 (600)
                      |+.+.|.|.+.|.|.|+|.|++++..+......    ......      .+.|.|.+++..|.|.|+|.|.|..|...+.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~----~~~~~~------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~   70 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD----PRRRVD------GGTLILSNVQPNDTAVYQCNASNVHGYLLAN   70 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc----ceEEcc------CCEEEECCCChhhCEEEEEEEEccCCeEEEe
Confidence            678999999999999999999999877643311    111111      2479999999999999999999999999999


Q ss_pred             EEEEE
Q psy1672         349 FTLQV  353 (600)
Q Consensus       349 v~L~V  353 (600)
                      +.|.|
T Consensus        71 ~~l~V   75 (76)
T cd04978          71 AFVHV   75 (76)
T ss_pred             EEEEE
Confidence            88876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.17  E-value=1.5e-10  Score=95.51  Aligned_cols=81  Identities=35%  Similarity=0.441  Sum_probs=66.8

Q ss_pred             ccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      .+....+..|+.+.|.|.+.|.|.|.+.|++++..+....      ++.. .+      +.|.|.+++.+|.|.|+|.|.
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~------~~~~-~~------~~L~i~~~~~~D~G~Y~C~a~   71 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASEN------RIEV-EA------GDLRITKLSLSDSGMYQCVAE   71 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCC------eEEE-eC------CEEEEeeCCHHHCEEEEEEEE
Confidence            4566788899999999999999999999999998765322      3322 22      379999999999999999999


Q ss_pred             cCCCceeEEEEEEE
Q psy1672         340 NRAGIADANFTLQV  353 (600)
Q Consensus       340 N~~G~~~~~v~L~V  353 (600)
                      |..|...+++.|.|
T Consensus        72 N~~G~~~~~~~l~V   85 (85)
T cd05728          72 NKHGTIYASAELAV   85 (85)
T ss_pred             CCCCeEEEEEEEEC
Confidence            99999988877754

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.16  E-value=2.3e-10  Score=97.20  Aligned_cols=89  Identities=29%  Similarity=0.421  Sum_probs=66.0

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEc--CeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      .....+.+|+.++|.|.+.|.|.|.|.|+++  +..+.... .....++.+....   ..+.|.|.+++.+|+|.|+|.|
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~-~~~~~r~~v~~~~---~~~~L~I~~v~~~D~G~Y~C~A   83 (98)
T cd05870           8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGD-KSPDGRIEVKGQH---GESSLHIKDVKLSDSGRYDCEA   83 (98)
T ss_pred             eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCC-cCcCceEEEeecC---CeeEEEEeeCCcCCCEEEEEEE
Confidence            4567888999999999999999999999993  43332211 0112344333221   2357999999999999999999


Q ss_pred             ecCCCceeEEEEEEE
Q psy1672         339 ENRAGIADANFTLQV  353 (600)
Q Consensus       339 ~N~~G~~~~~v~L~V  353 (600)
                      .|..|...+++.|.|
T Consensus        84 ~N~~G~~~~~~~l~~   98 (98)
T cd05870          84 ASRIGGHQKSMYLDI   98 (98)
T ss_pred             eccCCcceeEEEEeC
Confidence            999999988877754

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.16  E-value=2.7e-10  Score=94.63  Aligned_cols=82  Identities=23%  Similarity=0.285  Sum_probs=65.9

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      ..+....+..|+.+.|.|.+.|.|.|++.|++++..+....      ... .      ..+.|.|.+++.+|+|.|+|.|
T Consensus         6 ~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~------~~~-~------~~~~L~i~~v~~~D~G~Y~C~a   72 (88)
T cd04968           6 VFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSA------EIS-M------SGAVLKIPNIQFEDEGTYECEA   72 (88)
T ss_pred             ECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCcc------EEE-E------eCCEEEECCCCcccCEEEEEEE
Confidence            34566778899999999999999999999999776443221      111 1      1247999999999999999999


Q ss_pred             ecCCCceeEEEEEEE
Q psy1672         339 ENRAGIADANFTLQV  353 (600)
Q Consensus       339 ~N~~G~~~~~v~L~V  353 (600)
                      .|..|..+....|.|
T Consensus        73 ~N~~G~~~~~~~l~V   87 (88)
T cd04968          73 ENIKGKDTHQGRIYV   87 (88)
T ss_pred             EECCCcEEEEEEEEE
Confidence            999999988888776

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.14  E-value=3e-10  Score=93.57  Aligned_cols=82  Identities=22%  Similarity=0.416  Sum_probs=64.3

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      ..+..|+.+.|.|.+.|.|.|.+.|+++|..+......   .......     ....|.|.+++.+|.|.|+|.|.|..|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~---~~~~~~~-----~~~~l~i~~~~~~D~G~Y~C~a~N~~G   75 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRI---GGYKVRN-----QHWSLIMESVVPSDKGNYTCVVENEYG   75 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCce---eeeEEeC-----CceEEEEccCCcccCEEEEEEEEeCCC
Confidence            35678999999999999999999999999887643311   1111111     124689999999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy1672         344 IADANFTLQV  353 (600)
Q Consensus       344 ~~~~~v~L~V  353 (600)
                      ..+..+.|.|
T Consensus        76 ~~~~~~~l~v   85 (85)
T cd05857          76 SINHTYHLDV   85 (85)
T ss_pred             EEEEEEEEEC
Confidence            9998888764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.14  E-value=1.8e-10  Score=90.99  Aligned_cols=68  Identities=24%  Similarity=0.519  Sum_probs=55.6

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL  351 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L  351 (600)
                      +.|.|.+.|.|.|.+.|++++..+....      ++.+..+      +.|.|.+++.+|.|.|+|.|.|..|.++.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~------~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESG------KFHISPE------GYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCC------CEEECCC------CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            5789999999999999999988765322      3333222      379999999999999999999999999887765

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.13  E-value=1.8e-10  Score=91.13  Aligned_cols=68  Identities=24%  Similarity=0.458  Sum_probs=55.4

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL  351 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L  351 (600)
                      +.+.|.+.|.|.|.+.|+++|+.+....      +.  ..      ...|.|.++..+|+|.|+|.|.|..|..+...++
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~------~~--~~------~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~   66 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNH------TF--KR------GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTF   66 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCC------EE--cc------CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEE
Confidence            4689999999999999999999886432      11  11      1369999999999999999999999988777666


Q ss_pred             EE
Q psy1672         352 QV  353 (600)
Q Consensus       352 ~V  353 (600)
                      .+
T Consensus        67 ~l   68 (70)
T cd05864          67 QL   68 (70)
T ss_pred             EE
Confidence            65

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.13  E-value=3.9e-10  Score=95.60  Aligned_cols=97  Identities=26%  Similarity=0.394  Sum_probs=67.3

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+..+.+..|+.+.|.|.+.|.|.|.+.|+++|..+........ .+.....++... ...+.+..++..|.|.|
T Consensus         2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~~~~~~~~~~-~~~i~~~~~~~~D~G~Y   79 (100)
T cd07693           2 PRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPR-SHRIVLPSGSLF-FLRVVHGRKGRSDEGVY   79 (100)
T ss_pred             CeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCC-cceEEecCCcEE-EEEeeccCCCcCcCEEE
Confidence            4555667778889999999999999999999999999988765321111 112222333111 11222334478999999


Q ss_pred             EEEEecCCCc-eeEEEEEEE
Q psy1672         335 YCVAENRAGI-ADANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~-~~~~v~L~V  353 (600)
                      +|.|+|..|. .++.+.|.|
T Consensus        80 ~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          80 VCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEccccceecceEEEEe
Confidence            9999999999 567777765

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.13  E-value=2.8e-10  Score=90.41  Aligned_cols=70  Identities=29%  Similarity=0.505  Sum_probs=55.8

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL  351 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L  351 (600)
                      +.|.|.+.|.|.|.+.|++++..+....       .....     ..+.|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-------~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   68 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-------TKKLN-----NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV   68 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCc-------eeEEc-----CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence            4689999999999999999886553211       11111     12489999999999999999999999999988888


Q ss_pred             EE
Q psy1672         352 QV  353 (600)
Q Consensus       352 ~V  353 (600)
                      .|
T Consensus        69 ~V   70 (71)
T cd05876          69 TV   70 (71)
T ss_pred             EE
Confidence            76

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.13  E-value=3.7e-10  Score=94.66  Aligned_cols=84  Identities=23%  Similarity=0.378  Sum_probs=67.1

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEe-eCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI-EQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~-~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      +..+.+.+|+.+.|.|.+.|.|.|.+.|+++++.+....      ++.+. ..+   ..+.|.|.+++.+|+|.|+|.|.
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~------~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~   78 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSE------HYSVKLEQG---KYASLTIKGVTSEDSGKYSINVK   78 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCC------CEEEEEcCC---CEEEEEECCCChhhCEEEEEEEE
Confidence            557788999999999999999999999999988765322      22221 122   12479999999999999999999


Q ss_pred             cCCCceeEEEEEEE
Q psy1672         340 NRAGIADANFTLQV  353 (600)
Q Consensus       340 N~~G~~~~~v~L~V  353 (600)
                      |..|.++..+.|.|
T Consensus        79 N~~G~~~~~~~v~~   92 (92)
T cd05891          79 NKYGGETVDVTVSV   92 (92)
T ss_pred             eCCCceeeEEEEEC
Confidence            99999998887764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.11  E-value=4.6e-10  Score=90.17  Aligned_cols=74  Identities=27%  Similarity=0.495  Sum_probs=56.4

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL  351 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L  351 (600)
                      ++|.|.+.|.|.|++.|++++.......   ...++.+...+     +.|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~---~~~~~~~~~~~-----~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l   72 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAA---RERRMHVMPED-----DVFFIVDVKIEDTGVYSCTAQNTAGSISANATL   72 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcc---cccceEEecCC-----CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEE
Confidence            4789999999999999999875322111   11233332222     378999999999999999999999999988888


Q ss_pred             EE
Q psy1672         352 QV  353 (600)
Q Consensus       352 ~V  353 (600)
                      .|
T Consensus        73 ~V   74 (75)
T cd05763          73 TV   74 (75)
T ss_pred             EE
Confidence            76

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.10  E-value=5.8e-10  Score=93.06  Aligned_cols=83  Identities=30%  Similarity=0.330  Sum_probs=62.6

Q ss_pred             cccceeeeEeecCCCCeeEEEEcCeeccC--CcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCcee
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNGRLLLN--NTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD  346 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g~~l~~--~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~  346 (600)
                      |+.++|.|.+.|.|.|.+.|++++..+..  ........++.+..+      +.|.|.+++.+|+|.|+|.|.|..|...
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   74 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT------GDLTITNVQRSDVGYYICQTLNVAGSIL   74 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC------CeEEEeeCChhhCEEEEEEEEcCCCceE
Confidence            67899999999999999999997753211  000011223333323      3799999999999999999999999999


Q ss_pred             EEEEEEEEEcc
Q psy1672         347 ANFTLQVTYRG  357 (600)
Q Consensus       347 ~~v~L~V~~~~  357 (600)
                      ..+.|.|....
T Consensus        75 ~~~~l~V~~~~   85 (90)
T cd05726          75 TKAYLEVTDVI   85 (90)
T ss_pred             EEEEEEEeecc
Confidence            99999996543

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.10  E-value=4.2e-10  Score=88.80  Aligned_cols=69  Identities=28%  Similarity=0.462  Sum_probs=55.5

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL  351 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L  351 (600)
                      ++|.|.+.|.|+|.+.|++++..+..       .+..+..+      ..|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~-------~~~~~~~~------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   67 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK-------GRAEILDD------KSLKIRNVTAGDEGSYTCEAENMVGKIEASASL   67 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC-------CcEEEeeC------CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence            57899999999999999998764432       12333332      379999999999999999999999999888877


Q ss_pred             EE
Q psy1672         352 QV  353 (600)
Q Consensus       352 ~V  353 (600)
                      .|
T Consensus        68 ~V   69 (69)
T cd05725          68 TV   69 (69)
T ss_pred             EC
Confidence            54

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.10  E-value=5.6e-10  Score=89.38  Aligned_cols=73  Identities=33%  Similarity=0.615  Sum_probs=58.2

Q ss_pred             cccceeeeEeecCCCCeeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeE
Q psy1672         269 SENATVVCRVDSIPPAAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADA  347 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~  347 (600)
                      |+.+.|.|.+.|.|.|.+.|++ +++.+....      +.....+      +.|.|.+++..|.|.|+|+|.|..|.++.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~------~~~~~~~------~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~   68 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSS------RTLVYDN------GTLDILITTVKDTGSFTCIASNAAGEATA   68 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCC------eEEEecC------CEEEEEECChhhCEEEEEEEECCCCeEEE
Confidence            6789999999999999999997 565554321      2223333      37899999999999999999999999988


Q ss_pred             EEEEEE
Q psy1672         348 NFTLQV  353 (600)
Q Consensus       348 ~v~L~V  353 (600)
                      .+.|+|
T Consensus        69 ~~~l~v   74 (74)
T cd05764          69 TVELHI   74 (74)
T ss_pred             EEEEEC
Confidence            887764

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.09  E-value=5.3e-10  Score=88.81  Aligned_cols=69  Identities=26%  Similarity=0.541  Sum_probs=57.0

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL  351 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L  351 (600)
                      +.|.|.+.|.|.|.+.|+++|+.+....      +. ...      ...|.|.+++.+|+|.|+|.|.|..|..++++.+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~------~~-~~~------~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~   67 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKN------RT-KKS------GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTF   67 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCC------EE-EcC------CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEE
Confidence            4689999999999999999998876432      11 111      2479999999999999999999999998888877


Q ss_pred             EE
Q psy1672         352 QV  353 (600)
Q Consensus       352 ~V  353 (600)
                      .+
T Consensus        68 ~~   69 (71)
T cd04976          68 TL   69 (71)
T ss_pred             EE
Confidence            76

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.09  E-value=3.9e-10  Score=94.14  Aligned_cols=81  Identities=21%  Similarity=0.288  Sum_probs=57.5

Q ss_pred             cccceeeeEeecCCCCeeEEEEcC----eeccCCcccCccceEEEeeC----CceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNG----RLLLNNTAFSSYQRIFVIEQ----GEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g----~~l~~~~~~~~~~~~~~~~~----g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      |+.++|.|.+.|.|.|+|+|++++    ..+....    .........    ........|.|.+++.+|.|.|+|.|.|
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   76 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDG----LPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGN   76 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCC----CceEEEEEecCCcccccccceEEEeccccccCcEEEEEeec
Confidence            678999999999999999999953    2221110    011111111    0001124789999999999999999999


Q ss_pred             CCCceeEEEEEEE
Q psy1672         341 RAGIADANFTLQV  353 (600)
Q Consensus       341 ~~G~~~~~v~L~V  353 (600)
                      ..|...+++.|.|
T Consensus        77 ~~G~~~~sa~L~V   89 (90)
T cd04974          77 SIGPSHHSAWLTV   89 (90)
T ss_pred             ccCcccCCEEEEe
Confidence            9999999888876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.09  E-value=5.3e-10  Score=90.61  Aligned_cols=76  Identities=22%  Similarity=0.409  Sum_probs=59.8

Q ss_pred             cccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEE
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN  348 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~  348 (600)
                      |+.+.|.|.+.|.|.|.+.|++++..+....      ++.+...+   ..+.|.|.++..+|.|.|+|.|.|..|.....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~------~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   71 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSA------RVSITSEG---GYGTLTIRDVKESDQGAYTCEAINTRGMVFGI   71 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCC------CEEEEECC---CEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence            6789999999999999999999887664322      33333222   23579999999999999999999999998777


Q ss_pred             EEEEE
Q psy1672         349 FTLQV  353 (600)
Q Consensus       349 v~L~V  353 (600)
                      ..+.+
T Consensus        72 ~~~~~   76 (78)
T cd05743          72 PDGIL   76 (78)
T ss_pred             ccEEE
Confidence            66654

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.09  E-value=6.2e-10  Score=91.80  Aligned_cols=81  Identities=23%  Similarity=0.383  Sum_probs=60.0

Q ss_pred             ccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeE
Q psy1672         270 ENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADA  347 (600)
Q Consensus       270 ~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~  347 (600)
                      +.+.|.|.+.|.|.|  .+.|+++|+.+........+.+....     ...+.|.|.+++..|+|.|+|.|.|..|..++
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~   75 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGK-----DSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSA   75 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecc-----cccceEEEccCCHHhCeeeEEEEecCCCcEEE
Confidence            367899999999988  56899999877543211001111111     12358999999999999999999999999999


Q ss_pred             EEEEEEEE
Q psy1672         348 NFTLQVTY  355 (600)
Q Consensus       348 ~v~L~V~~  355 (600)
                      ++.|.|..
T Consensus        76 ~~~l~V~~   83 (85)
T cd04970          76 SADLIVRG   83 (85)
T ss_pred             EEEEEEEC
Confidence            99988854

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.08  E-value=6.6e-10  Score=89.05  Aligned_cols=72  Identities=33%  Similarity=0.556  Sum_probs=55.8

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCce-eEEEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA-DANFT  350 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~-~~~v~  350 (600)
                      ++|.|.+.|.|.|.|.|++++..+....    ..++....++      .|.|.+++.+|.|.|+|.|.|..|.. +..+.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~----~~~~~~~~~g------~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~   70 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTS----NGRIKQLRSG------ALQIENSEESDQGKYECVATNSAGTRYSAPAN   70 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCC----CCCEEEcCCc------EEEECCCChhhCEEEEEEEECCCCceEcccEE
Confidence            4799999999999999999988765322    2233333333      68999999999999999999999985 55566


Q ss_pred             EEE
Q psy1672         351 LQV  353 (600)
Q Consensus       351 L~V  353 (600)
                      |.|
T Consensus        71 l~v   73 (74)
T cd05738          71 LYV   73 (74)
T ss_pred             EEE
Confidence            654

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.08  E-value=1e-09  Score=93.14  Aligned_cols=89  Identities=28%  Similarity=0.379  Sum_probs=66.7

Q ss_pred             cccccccccccccceeeeEeecCCCC-eeEEEEcCeeccCCcccCccceEEEeeCC-ceeeeeeEEEecCCCCC-CeEEE
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQG-EYERKSSLVLTNAQESD-SGRFY  335 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g-~~~~~s~L~I~~v~~~d-~G~Y~  335 (600)
                      ..+....+..|+.+.|.|.+.|.|.| .|.|+++++.+....    ..++.+.... .....+.|.|.++..+| .|.|+
T Consensus         6 ~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~----~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~   81 (98)
T cd05758           6 TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGS----SGRYTVETDPSPGGVLSTLTISNTQESDFQTSYN   81 (98)
T ss_pred             cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCC----CCCEEEEEecCCCceEEEEEECCccccccceeEE
Confidence            34455667899999999999999999 699999998775432    1233333221 11234689999999855 89999


Q ss_pred             EEEecCCCceeEEEEE
Q psy1672         336 CVAENRAGIADANFTL  351 (600)
Q Consensus       336 C~a~N~~G~~~~~v~L  351 (600)
                      |.|.|..|.++..+.|
T Consensus        82 C~A~N~~G~~~~~~~L   97 (98)
T cd05758          82 CTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEcCCCcccEEEEe
Confidence            9999999999887765

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.08  E-value=8.8e-10  Score=89.07  Aligned_cols=72  Identities=32%  Similarity=0.599  Sum_probs=55.3

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCcee--EEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD--ANF  349 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~--~~v  349 (600)
                      ++|.|.+.|.|.|.+.|+++|..+....     .+..+...     .+.|.|.+++.+|.|.|+|.|.|.+|...  +.+
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~-----~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~   70 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQ-----GNYSVSSK-----ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNF   70 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCC-----ccEEEeCC-----CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceE
Confidence            5799999999999999999998775432     12222221     24799999999999999999999999874  455


Q ss_pred             EEEE
Q psy1672         350 TLQV  353 (600)
Q Consensus       350 ~L~V  353 (600)
                      +|.|
T Consensus        71 ~l~v   74 (77)
T cd05760          71 TLSI   74 (77)
T ss_pred             EEEE
Confidence            5555

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>KOG0618|consensus

Probab=99.06  E-value=4.4e-12  Score=139.65  Aligned_cols=153  Identities=29%  Similarity=0.352  Sum_probs=84.5

Q ss_pred             CCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCc-----------------------ccCccccCCCCCccEEE
Q psy1672          49 ELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIG-----------------------QIDSGALDGLTNLIEID  105 (600)
Q Consensus        49 ~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~-----------------------~i~~~~f~~l~~L~~L~  105 (600)
                      .+++++++++|+++.+|.-+.   .+.+|+.|.+.+|+|.                       .+++ ...+++.|+.|+
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~---~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~-~le~~~sL~tLd  316 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIG---ACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP-FLEGLKSLRTLD  316 (1081)
T ss_pred             ccceeeecchhhhhcchHHHH---hcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC-cccccceeeeee
Confidence            346666666666666663332   3556666665555554                       3333 244577888888


Q ss_pred             ccCCCCCCCCccccC-------------------------CCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCc
Q psy1672         106 LSDNLLTSIPSLTFQ-------------------------SVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE  160 (600)
Q Consensus       106 Ls~N~l~~l~~~~f~-------------------------~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~  160 (600)
                      |..|+|..+|...|.                         .++.|+.|.|.+|.++.-+-..+.+.++|+.|+|++|+|.
T Consensus       317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            888888777664331                         1123444455555555444444555556666666666666


Q ss_pred             ccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCc
Q psy1672         161 HISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP  206 (600)
Q Consensus       161 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~  206 (600)
                      .++...+.+++.|+.|+|++|+|+.++ ..+..+..|++|...+|.
T Consensus       397 ~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~  441 (1081)
T KOG0618|consen  397 SFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQ  441 (1081)
T ss_pred             cCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCc
Confidence            665555666666666666666666555 333333333333333333

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.06  E-value=9.1e-10  Score=91.89  Aligned_cols=81  Identities=25%  Similarity=0.381  Sum_probs=58.4

Q ss_pred             cccceeeeEeecCCCCeeEEEEc----CeeccCCcccCccceEEEeeCCce----eeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         269 SENATVVCRVDSIPPAAISWYWN----GRLLLNNTAFSSYQRIFVIEQGEY----ERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~----g~~l~~~~~~~~~~~~~~~~~g~~----~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      |+.+.|.|.+.|.|.|.|+|++.    +..+....    .....+...+..    ...+.|.|.+++.+|.|.|+|+|.|
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   76 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDG----LPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGN   76 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCC----CeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEe
Confidence            67899999999999999999984    33222111    111111111100    1135899999999999999999999


Q ss_pred             CCCceeEEEEEEE
Q psy1672         341 RAGIADANFTLQV  353 (600)
Q Consensus       341 ~~G~~~~~v~L~V  353 (600)
                      ..|....++.|.|
T Consensus        77 ~~G~~~~~a~L~V   89 (90)
T cd05858          77 SIGISHHSAWLTV   89 (90)
T ss_pred             CCCcccceEEEEE
Confidence            9999998888876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.05  E-value=1.3e-09  Score=91.04  Aligned_cols=80  Identities=24%  Similarity=0.432  Sum_probs=63.3

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +.+..+.+|+.++|.|.+.|. .|.|.|++++..+...       ++.+..++     +.|.|.+++.+|.|.|+|.|.|
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-------~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~N   76 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-------RLQLSNDN-----RTLTFNNVTRSDTGHYQCEASN   76 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-------CEEEeCCC-----CEEEECcCChhhCEEEEEEEEc
Confidence            456788999999999999999 9999999998876432       23332222     3799999999999999999999


Q ss_pred             CCCce-eEEEEEEE
Q psy1672         341 RAGIA-DANFTLQV  353 (600)
Q Consensus       341 ~~G~~-~~~v~L~V  353 (600)
                      ..|.. +..+.|.|
T Consensus        77 ~~G~~~S~~~~L~V   90 (91)
T cd05740          77 EVSNMTSDPYILNV   90 (91)
T ss_pred             CCCCEEeeeEEEEe
Confidence            99985 44566655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.05  E-value=1.2e-09  Score=91.29  Aligned_cols=85  Identities=28%  Similarity=0.524  Sum_probs=64.4

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEE
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCV  337 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~  337 (600)
                      ..+....+..|+.+.|.|.+.|.|. .+.|++ ++..+...      .++.+..++   ..+.|.|.++..+|+|.|+|.
T Consensus         5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~------~r~~~~~~g---~~~~L~I~~v~~~D~G~Y~C~   74 (92)
T cd05866           5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS------QRVVVQKEG---VRSRLTIYNANIEDAGIYRCQ   74 (92)
T ss_pred             EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC------CCEEEEeCC---CeeEEEEecCChHHCEEEEEE
Confidence            3455677889999999999999998 899998 46555332      234443333   134799999999999999999


Q ss_pred             EecCCCce-eEEEEEEE
Q psy1672         338 AENRAGIA-DANFTLQV  353 (600)
Q Consensus       338 a~N~~G~~-~~~v~L~V  353 (600)
                      |.|..|.. .+++.|.+
T Consensus        75 A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          75 ATDAKGQTQEATVVLEI   91 (92)
T ss_pred             EEcCCCcEEEEEEEEEE
Confidence            99999986 55566654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.05  E-value=1.6e-09  Score=93.75  Aligned_cols=84  Identities=27%  Similarity=0.371  Sum_probs=64.6

Q ss_pred             cccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEE--EeeCCceeeeeeEEEecCC-CCCCeEEEEEEecCCC
Q psy1672         267 VSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIF--VIEQGEYERKSSLVLTNAQ-ESDSGRFYCVAENRAG  343 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~--~~~~g~~~~~s~L~I~~v~-~~d~G~Y~C~a~N~~G  343 (600)
                      ..|..++|.|.+.|.|.+.+.|++++..+....     .+..  ....+ ....+.|.|.++. .+|.|.|+|.|.|..|
T Consensus        21 ~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~-----~r~~~~~~~~~-~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G   94 (109)
T cd05773          21 DGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGN-----PRYEETTEHTG-TVHTSILTIINVSAALDYALFTCTAHNSLG   94 (109)
T ss_pred             CCCCEEEEEEECcccCCCEEEEEECCEECCCCC-----CeEEEEeeccC-ccceeEEEECcCCccCCCEEEEEEEEeCCc
Confidence            357889999999999999999999998775322     1221  11221 1224689999997 6999999999999999


Q ss_pred             ceeEEEEEEEEEc
Q psy1672         344 IADANFTLQVTYR  356 (600)
Q Consensus       344 ~~~~~v~L~V~~~  356 (600)
                      .+...+.|.+...
T Consensus        95 ~~~~~i~L~~~~~  107 (109)
T cd05773          95 EDSLDIQLVSTSR  107 (109)
T ss_pred             cCcEEEEEEecCC
Confidence            9999999988644

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.04  E-value=7.4e-10  Score=90.33  Aligned_cols=80  Identities=24%  Similarity=0.417  Sum_probs=62.7

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++++..+.....      ...     ....+.|.|.+++.+|+|.|+|.|.|..
T Consensus         3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~------~~~-----~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   71 (82)
T cd05856           3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEI------GES-----RKKKWTLSLKNLKPEDSGKYTCHVSNRA   71 (82)
T ss_pred             ceeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcc------cee-----cCceEEEEEccCChhhCEEEEEEEEcCC
Confidence            34567899999999999999999999998876643221      000     0123579999999999999999999999


Q ss_pred             CceeEEEEEEE
Q psy1672         343 GIADANFTLQV  353 (600)
Q Consensus       343 G~~~~~v~L~V  353 (600)
                      |..++.+.|.|
T Consensus        72 G~~~~~~~v~v   82 (82)
T cd05856          72 GEINATYKVDV   82 (82)
T ss_pred             ccEEEEEEEeC
Confidence            99888877753

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.03  E-value=1.9e-09  Score=86.75  Aligned_cols=74  Identities=28%  Similarity=0.572  Sum_probs=59.5

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL  351 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L  351 (600)
                      +.|.|.+.|.|.|.+.|+++++.+....    ..++....++     ..|.|.+++.+|.|.|+|.|.|..|.++..+.|
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~----~~~~~~~~~~-----~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   71 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKL----SKQLTLIANG-----SELHISNVRYEDTGAYTCIAKNEAGVDEDISSL   71 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCC----CccEEEeCCC-----CEEEECcCCcccCEEEEEEEEcCCCCcceEEEE
Confidence            4689999999999999999998775432    1233333332     368999999999999999999999999999998


Q ss_pred             EEE
Q psy1672         352 QVT  354 (600)
Q Consensus       352 ~V~  354 (600)
                      .|.
T Consensus        72 ~V~   74 (76)
T cd05736          72 FVE   74 (76)
T ss_pred             EEE
Confidence            874

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.02  E-value=1.8e-09  Score=89.11  Aligned_cols=80  Identities=26%  Similarity=0.496  Sum_probs=62.3

Q ss_pred             cccccccccccceeeeEe-ecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         261 SRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      +....+..|+.+.|.|.+ .|.|.|.+.|++++..+....     .+..+..+      +.|.|.+++.+|+|.|+|.|.
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~-----~~~~~~~~------~~L~I~~~~~~D~G~Y~C~a~   71 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDN-----ERVRIVDD------GNLLIAEARKSDEGTYKCVAT   71 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCC-----CCEEEccC------CEEEEeECCcccCEEEEEEEE
Confidence            456677899999999998 699999999999988765421     22333332      379999999999999999999


Q ss_pred             cCCCcee-EEEEE
Q psy1672         340 NRAGIAD-ANFTL  351 (600)
Q Consensus       340 N~~G~~~-~~v~L  351 (600)
                      |..|... ..+.|
T Consensus        72 N~~G~~~s~~~~l   84 (86)
T cd05724          72 NMVGERESAAARL   84 (86)
T ss_pred             eccCceeeeeEEE
Confidence            9999864 34444

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.02  E-value=1.7e-09  Score=91.18  Aligned_cols=83  Identities=28%  Similarity=0.464  Sum_probs=61.4

Q ss_pred             ccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecC-----CCCCCeEE
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA-----QESDSGRF  334 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v-----~~~d~G~Y  334 (600)
                      .+....+..|+.+.|.|.+.|.|.|.+.|+++|..+....    ..+..+..++      .+.|.++     ...|.|.|
T Consensus         5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~----~~~~~~~~~~------~l~i~~v~~~~~~~~D~G~Y   74 (95)
T cd05722           5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVS----DERRQQLPNG------SLLITSVVHSKHNKPDEGFY   74 (95)
T ss_pred             CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECcccc----CcceEEccCC------eEEEeeeeccCCCCCcCEEE
Confidence            3455667789999999999999999999999998876433    1223333333      4555555     68899999


Q ss_pred             EEEEecC-CCce-eEEEEEE
Q psy1672         335 YCVAENR-AGIA-DANFTLQ  352 (600)
Q Consensus       335 ~C~a~N~-~G~~-~~~v~L~  352 (600)
                      +|.|.|. .|.. ++.+.|.
T Consensus        75 ~C~a~N~~~G~~~s~~~~l~   94 (95)
T cd05722          75 QCVAQNDSLGSIVSRTARLT   94 (95)
T ss_pred             EEEEECCccCcEEEeeeEEe
Confidence            9999999 9986 5555554

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.01  E-value=1.4e-09  Score=88.62  Aligned_cols=79  Identities=33%  Similarity=0.483  Sum_probs=56.3

Q ss_pred             cccceeeeEeecCCCCeeEEEEcCeeccCCcccCc--cceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCcee
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSS--YQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD  346 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~--~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~  346 (600)
                      |+.++|.|.+.|.|.|.+.|++++..-......+.  ..++...      ..+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   74 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVT------NIGQLVIYNAQPQDAGLYTCTARNSGGLLR   74 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEc------cccEEEEccCCcccCEEEEEEEecCCceEE
Confidence            67899999999999999999996321000000000  0111111      124799999999999999999999999999


Q ss_pred             EEEEEEE
Q psy1672         347 ANFTLQV  353 (600)
Q Consensus       347 ~~v~L~V  353 (600)
                      ..+.|.|
T Consensus        75 ~~~~l~v   81 (81)
T cd05765          75 ANFPLSV   81 (81)
T ss_pred             EEEEEeC
Confidence            8888764

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.01  E-value=1.4e-09  Score=86.09  Aligned_cols=70  Identities=26%  Similarity=0.444  Sum_probs=55.4

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL  351 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L  351 (600)
                      +.|.|.+.|.|.|.+.|++++..+....       .....     ..+.|.|.+++.+|.|.|+|.|.|..|..+..+.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-------~~~~~-----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   68 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADR-------TKFEN-----FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV   68 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCc-------eeEec-----CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence            4689999999999999999876553211       11111     12479999999999999999999999999888887


Q ss_pred             EE
Q psy1672         352 QV  353 (600)
Q Consensus       352 ~V  353 (600)
                      .|
T Consensus        69 ~V   70 (71)
T cd05731          69 TV   70 (71)
T ss_pred             EE
Confidence            76

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.01  E-value=1.6e-09  Score=88.09  Aligned_cols=78  Identities=23%  Similarity=0.394  Sum_probs=61.8

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ....+..|+.+.|.|.+.+. .+.+.|+++|..+....      ++.+. .      ..|.|.+++.+|+|.|+|.|.|.
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~------~~~~~-~------~~L~I~~~~~~DsG~Y~C~a~n~   67 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENN------RTRIT-G------EEVQIKDAVPRDSGLYACVTSSP   67 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCc------eEEEe-C------CEEEECCCChhhCEEEEEEEeCC
Confidence            45667899999999999986 56899999998775432      33221 2      26999999999999999999999


Q ss_pred             CCceeEEEEEEE
Q psy1672         342 AGIADANFTLQV  353 (600)
Q Consensus       342 ~G~~~~~v~L~V  353 (600)
                      .|.....+.+.|
T Consensus        68 ~g~~~~~~~v~V   79 (79)
T cd04973          68 SGSDTTYFSVNV   79 (79)
T ss_pred             CCcccEEEEEeC
Confidence            999877776653

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.00  E-value=2.8e-09  Score=89.78  Aligned_cols=93  Identities=30%  Similarity=0.443  Sum_probs=70.7

Q ss_pred             cccccccccccccccccceeeeEeecCCCC-eeEEEEcCeeccCCcccCccceEEEeeC-CceeeeeeEEEecCCCCC-C
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQ-GEYERKSSLVLTNAQESD-S  331 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~-g~~~~~s~L~I~~v~~~d-~  331 (600)
                      |++....+...+..|+.+.|.|.+.+.|+| .|.|.|.+..+...+    ..++.+.+. ......+.|+|.++...| .
T Consensus         2 pP~i~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~----~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~   77 (98)
T cd05898           2 PPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGT----SERYTVERTSTGSGVLSTLTINNIMEADFQ   77 (98)
T ss_pred             CCEEecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCC----CCCEEEEEEccCCCcEEEEEECCCccccCC
Confidence            344455677788899999999999988887 689999887665443    235555432 112356799999998777 6


Q ss_pred             eEEEEEEecCCCceeEEEEE
Q psy1672         332 GRFYCVAENRAGIADANFTL  351 (600)
Q Consensus       332 G~Y~C~a~N~~G~~~~~v~L  351 (600)
                      |.|.|.|.|..|.++..+.|
T Consensus        78 g~Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          78 THYNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             cEEEEEEEeCCccceEEEEe
Confidence            89999999999999988776

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.00  E-value=1.8e-09  Score=85.15  Aligned_cols=68  Identities=25%  Similarity=0.458  Sum_probs=53.0

Q ss_pred             cccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEE
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN  348 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~  348 (600)
                      |+.++|.|.+.|.|.|.|.|+++++.+....      ++..   +    .+.|.|.+++  |+|.|+|.|.|..|..+.+
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~------~~~~---~----~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~   65 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKED------EMPV---G----RNVLELTNIY--ESANYTCVAISSLGMIEAT   65 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCcc------ceec---C----ccEEEEeccc--cCeeEEEEEEeCCCEEEEE
Confidence            6789999999999999999999988764322      1111   1    2368888874  7899999999999998877


Q ss_pred             EEE
Q psy1672         349 FTL  351 (600)
Q Consensus       349 v~L  351 (600)
                      +.|
T Consensus        66 a~l   68 (69)
T cd05739          66 AQV   68 (69)
T ss_pred             EEE
Confidence            655

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.00  E-value=2.1e-09  Score=88.17  Aligned_cols=82  Identities=18%  Similarity=0.343  Sum_probs=60.8

Q ss_pred             ccceeeeEeec--CCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeE
Q psy1672         270 ENATVVCRVDS--IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADA  347 (600)
Q Consensus       270 ~~v~L~C~v~g--~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~  347 (600)
                      +++.|.|.+.+  .+.+.|.|+++|+.+....   ...++.... + ....+.|.|.+++..|+|.|+|.|+|.++..++
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~---~~~~~~~~~-~-~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a   75 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQK---DGDHFERVG-G-QDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSA   75 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccC---CCccEEEec-c-CCCCCcEEEecCCHHHCEEEEEEEEcccCceEE
Confidence            36789999976  4578899999999886321   111222211 1 012358999999999999999999999999999


Q ss_pred             EEEEEEEEc
Q psy1672         348 NFTLQVTYR  356 (600)
Q Consensus       348 ~v~L~V~~~  356 (600)
                      +..|.|...
T Consensus        76 ~a~L~V~~p   84 (85)
T cd05853          76 AADLIVRGP   84 (85)
T ss_pred             EEEEEEecC
Confidence            999988643

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.00  E-value=2.6e-09  Score=89.85  Aligned_cols=68  Identities=24%  Similarity=0.450  Sum_probs=53.4

Q ss_pred             ccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCC-CCCCeEEEEEEecCCCcee
Q psy1672         268 SSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ-ESDSGRFYCVAENRAGIAD  346 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~-~~d~G~Y~C~a~N~~G~~~  346 (600)
                      +|+.+.|.|.+.|.|.|+|+|+++|..+....    ..+.. ..+      +.|.|.++. ..|.|.|+|.|.|.+|...
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~----~~~~~-~~~------g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTES----DYRYS-LID------GNLIISNPSEVKDSGRYQCLATNSIGSIL   86 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCC----CceEE-eeC------CeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence            57899999999999999999999998875332    11222 222      368888875 6999999999999999874

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.97  E-value=3.4e-09  Score=88.76  Aligned_cols=85  Identities=31%  Similarity=0.533  Sum_probs=62.1

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEE
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCV  337 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~  337 (600)
                      ..+....+..|+.+.|.|.+.|.|+ .+.|++ +++.+...      .+..+..++  ...+.|+|.+++.+|+|.|+|.
T Consensus         5 v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~------~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~   75 (92)
T cd04977           5 IVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQ------QQISVVQND--DVRSTLTIYNANIEDAGIYKCV   75 (92)
T ss_pred             EecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccC------CCEEEEeCC--CCEEEEEEecCCcccCEEEEEE
Confidence            3455677889999999999999974 999998 56554431      122222222  1345899999999999999999


Q ss_pred             EecCCCc-eeEEEEEE
Q psy1672         338 AENRAGI-ADANFTLQ  352 (600)
Q Consensus       338 a~N~~G~-~~~~v~L~  352 (600)
                      |.|..|. .++++.|.
T Consensus        76 A~N~~g~~~~~sv~l~   91 (92)
T cd04977          76 ATDAKGTESEATVNLK   91 (92)
T ss_pred             EEcCCCCcceeEEEEE
Confidence            9999754 56666664

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.97  E-value=5.3e-09  Score=88.02  Aligned_cols=83  Identities=28%  Similarity=0.441  Sum_probs=58.6

Q ss_pred             ccccccccccc---cccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCC-CCCCeE
Q psy1672         258 RMDSRYVEAVS---SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ-ESDSGR  333 (600)
Q Consensus       258 ~~~~~~~~v~~---G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~-~~d~G~  333 (600)
                      ...+..+.+.+   |+.++|.|.+.|.|.|.|+|+++|..+....    ..+..+ .+      +.|.|.++. ..|.|.
T Consensus         5 ~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~----~~~~~~-~~------g~L~I~~~~~~~D~G~   73 (94)
T cd05850           5 EEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAP----ESRYTL-VA------GNLVINNPQKARDAGS   73 (94)
T ss_pred             EECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCC----CceEEE-EC------CeEEEccCCccCcCEE
Confidence            33344444433   4689999999999999999999998875322    112222 22      368888865 599999


Q ss_pred             EEEEEecCCCceeE-EEEE
Q psy1672         334 FYCVAENRAGIADA-NFTL  351 (600)
Q Consensus       334 Y~C~a~N~~G~~~~-~v~L  351 (600)
                      |+|.|.|..|.... .+.|
T Consensus        74 Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          74 YQCLAINRCGTVVSREANL   92 (94)
T ss_pred             EEEEEEcCcCcEEEEEEEE
Confidence            99999999998743 4444

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.96  E-value=3.8e-09  Score=88.62  Aligned_cols=71  Identities=25%  Similarity=0.403  Sum_probs=53.8

Q ss_pred             cccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCC-CCCCeEEEEEEecCCCceeE
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ-ESDSGRFYCVAENRAGIADA  347 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~-~~d~G~Y~C~a~N~~G~~~~  347 (600)
                      |..+.|.|.+.|.|.|+|.|++++..+....     .+.. ..+      +.|.|.++. ..|.|.|+|.|+|.+|....
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~-----~~~~-~~~------g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   86 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTN-----DRYS-MVG------GNLVINNPDKYKDAGRYVCIVSNIYGKVRS   86 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCC-----CeEE-EEC------CEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence            4579999999999999999999988764321     1222 222      378998885 68999999999999998743


Q ss_pred             -EEEE
Q psy1672         348 -NFTL  351 (600)
Q Consensus       348 -~v~L  351 (600)
                       .+.|
T Consensus        87 ~~a~l   91 (93)
T cd05849          87 REATL   91 (93)
T ss_pred             ccEEE
Confidence             3443

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.93  E-value=5e-09  Score=86.16  Aligned_cols=81  Identities=20%  Similarity=0.315  Sum_probs=59.2

Q ss_pred             cccceeeeEeecC--CCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCcee
Q psy1672         269 SENATVVCRVDSI--PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD  346 (600)
Q Consensus       269 G~~v~L~C~v~g~--P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~  346 (600)
                      |+.+.|.|.+.+.  |.+.+.|.++++.+......  ..+. ... ......+.|.|.+++.+|+|.|+|.|.|..|..+
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~--~~~~-~~~-~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~   76 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSM--VTRQ-SLS-EATELSSTLTIPNATLKDSGTYTCAASSGTMDQK   76 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEe--eccc-ccc-cceEEEEEEEECCCChhhCEEEEEEEccCCCceE
Confidence            6789999999998  88999999877654322110  0011 111 1112456899999999999999999999999988


Q ss_pred             EEEEEEE
Q psy1672         347 ANFTLQV  353 (600)
Q Consensus       347 ~~v~L~V  353 (600)
                      ++..+.|
T Consensus        77 ~s~~v~v   83 (84)
T cd05742          77 ESTKVNI   83 (84)
T ss_pred             EEEEEEE
Confidence            8877765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.93  E-value=4.8e-09  Score=85.15  Aligned_cols=75  Identities=24%  Similarity=0.445  Sum_probs=52.4

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCc--ccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCce-eEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNT--AFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA-DAN  348 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~-~~~  348 (600)
                      ++|.|.+.|.|.|.+.|++++.......  ......++.+..+      +.|.|.+++.+|+|.|+|.|.|..|.+ ++.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~   74 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN------GSLLIKHVLEEDSGYYLCKVSNDVGADASKS   74 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecC------CeEEECcCCcccCEEEEEEEEeCCCCCCceE
Confidence            5799999999999999999543211100  0011233333333      479999999999999999999999987 555


Q ss_pred             EEEE
Q psy1672         349 FTLQ  352 (600)
Q Consensus       349 v~L~  352 (600)
                      +.|.
T Consensus        75 ~~l~   78 (79)
T cd05734          75 MVLT   78 (79)
T ss_pred             EEEe
Confidence            5554

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>KOG1259|consensus

Probab=98.91  E-value=1.4e-10  Score=113.17  Aligned_cols=129  Identities=21%  Similarity=0.280  Sum_probs=97.7

Q ss_pred             CCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeC
Q psy1672          75 LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM  154 (600)
Q Consensus        75 ~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~L  154 (600)
                      ..|+.|+|++|.|+.|+.. ..-+++++.|++|.|.|..+..  ++.+++|+.|+|++|.++.+.. .-..+-+++.|.|
T Consensus       284 q~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhhhhhh-hhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhh-hHhhhcCEeeeeh
Confidence            4678888888888888543 5677888888888888887765  6678888888888888777632 2335677888888


Q ss_pred             CCCcCcccChhhhcCCCCCCEEEcCCCcCCCCC-cccccccccccEEEccCCcCcc
Q psy1672         155 SESRLEHISPEAFTGAKSLESIKLNGNRLSHFP-VRSVEPLLKLMMIELHDNPWVC  209 (600)
Q Consensus       155 s~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~l~~N~~~C  209 (600)
                      +.|.|..+  ..+.++-+|..||+++|+|..+. ...+.+++-|+.+.+.+||+.-
T Consensus       360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            88888776  45667788888888888888765 3566778888888888888654

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.91  E-value=5.4e-09  Score=85.18  Aligned_cols=71  Identities=18%  Similarity=0.399  Sum_probs=55.8

Q ss_pred             ccccccccccccceeeeEeecCCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      .+..+.+..|+.+.|.|.+.|.|.| +|.|+++|+.+....            .   ...+.|.|..+  .|.|.|.|+|
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~------------~---~~~s~L~i~~~--~d~g~Y~C~A   66 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP------------A---PSPSVLNVPGL--NETSKFSCEA   66 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC------------C---CCCCEEEEccc--cCCeEEEEEE
Confidence            4566788999999999999999999 799999998775310            0   01246778776  4789999999


Q ss_pred             ecCCCceeE
Q psy1672         339 ENRAGIADA  347 (600)
Q Consensus       339 ~N~~G~~~~  347 (600)
                      +|..|....
T Consensus        67 ~N~~G~~~s   75 (81)
T cd05749          67 HNAKGVTTS   75 (81)
T ss_pred             EeccCcEEe
Confidence            999997653

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.90  E-value=7.4e-09  Score=82.16  Aligned_cols=69  Identities=20%  Similarity=0.313  Sum_probs=53.0

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL  351 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L  351 (600)
                      +.|.|.+.|.|.|++.|+++++.+....     .+..  .++     ..|.|.+++.+|+|.|+|.|+|..........+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-----~~~~--~~~-----~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKC-----SRYH--VDG-----YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCC-----cEEE--eCC-----CEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            4689999999999999999998876432     1221  122     269999999999999999999997766555544


Q ss_pred             E
Q psy1672         352 Q  352 (600)
Q Consensus       352 ~  352 (600)
                      .
T Consensus        69 ~   69 (72)
T cd07702          69 T   69 (72)
T ss_pred             E
Confidence            3

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.90  E-value=5.2e-09  Score=83.82  Aligned_cols=73  Identities=25%  Similarity=0.468  Sum_probs=54.6

Q ss_pred             ceeeeEeec-CCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEE
Q psy1672         272 ATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFT  350 (600)
Q Consensus       272 v~L~C~v~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~  350 (600)
                      +.|.|.+.| .|.|.+.|++++..+......   ....+...   ...+.|.|.+++.+|.|.|+|.|.|..|.+...+.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~---~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKP---RNIKIRNK---KKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCc---ceEEEEec---CceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            368999999 999999999999877643311   11112111   12458999999999999999999999999876653

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.89  E-value=7.1e-09  Score=83.73  Aligned_cols=67  Identities=25%  Similarity=0.473  Sum_probs=49.9

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCC----CCCeEEEEEEecCCCceeE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE----SDSGRFYCVAENRAGIADA  347 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~----~d~G~Y~C~a~N~~G~~~~  347 (600)
                      ++|.|.+.|.|.|+++|++++..+....    ..++.+...     .+.|.|.++..    .|.|.|+|.|+|..|.+..
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~----~~~~~~~~~-----~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEK----DPRVTMKPD-----SGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCC----CCCEEEeCC-----CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            4789999999999999999998775332    123332221     24788888753    6899999999999998643

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>KOG1259|consensus

Probab=98.88  E-value=2.1e-10  Score=111.83  Aligned_cols=134  Identities=26%  Similarity=0.354  Sum_probs=95.6

Q ss_pred             CCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCE
Q psy1672          96 DGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLES  175 (600)
Q Consensus        96 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~  175 (600)
                      .....|++||||+|.|+.+.. +..-++.++.|++++|.|..+..  +..+++|+.|+|++|.+..+ ...-.++-+++.
T Consensus       281 dTWq~LtelDLS~N~I~~iDE-SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDE-SVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKT  356 (490)
T ss_pred             chHhhhhhccccccchhhhhh-hhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhh-hhhHhhhcCEee
Confidence            345678889999999888876 56677889999999998887733  77888999999999988877 233346778888


Q ss_pred             EEcCCCcCCCCCcccccccccccEEEccCCcCccccccccchhhhcccCCCCCCCCCCCCccccccccccc
Q psy1672         176 IKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDL  246 (600)
Q Consensus       176 L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~~~~~~~C~~p~~l~g~~l~~l  246 (600)
                      |.|++|.|.+++  .+.++-+|..|++.+|.+.-          +. ..+......|.....+.+..+..+
T Consensus       357 L~La~N~iE~LS--GL~KLYSLvnLDl~~N~Ie~----------ld-eV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  357 LKLAQNKIETLS--GLRKLYSLVNLDLSSNQIEE----------LD-EVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             eehhhhhHhhhh--hhHhhhhheeccccccchhh----------HH-HhcccccccHHHHHhhcCCCcccc
Confidence            999999888875  56677788888888887431          11 111112345665556666665443

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.86  E-value=1.5e-08  Score=81.80  Aligned_cols=67  Identities=22%  Similarity=0.439  Sum_probs=48.2

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCC----CCCeEEEEEEecCCCceeE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE----SDSGRFYCVAENRAGIADA  347 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~----~d~G~Y~C~a~N~~G~~~~  347 (600)
                      +.|.|.+.|.|.|+|+|++++..+....    ..+..+...     .+.|.|..+..    .|.|.|+|.|.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~----~~~~~~~~~-----~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDK----DPKVTMKPN-----TGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcC----CCCEEEeCC-----CceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            4689999999999999999988764322    112222221     23677777664    3789999999999998754

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.86  E-value=8.4e-09  Score=86.68  Aligned_cols=83  Identities=23%  Similarity=0.325  Sum_probs=62.0

Q ss_pred             ccccccccccceeeeEeec-----CCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         262 RYVEAVSSENATVVCRVDS-----IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g-----~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      ....+.+|+.+.|.|.+.+     .|.+.|.|++++..+....  ....++.  ..     .+.|.|.+++.+|+|.|+|
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~--~~~~r~~--~~-----~~~L~I~~~~~~DsG~Y~C   77 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPT--EERSRMH--QQ-----KDLLWFLPAALEDSGLYTC   77 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccc--cccceee--ec-----CCeEEEccCCcccCeEEEE
Confidence            3456678999999999998     6889999999886533211  0011221  11     1379999999999999999


Q ss_pred             EEecCCCceeEEEEEEE
Q psy1672         337 VAENRAGIADANFTLQV  353 (600)
Q Consensus       337 ~a~N~~G~~~~~v~L~V  353 (600)
                      ++.|..|..+..+.|.|
T Consensus        78 ~~~N~~g~~~~~~~L~v   94 (94)
T cd05756          78 VVRNSTYCMKVSISLTV   94 (94)
T ss_pred             EEcCCCccEEEEEEEEC
Confidence            99999999888777654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=1.5e-09  Score=83.50  Aligned_cols=59  Identities=39%  Similarity=0.531  Sum_probs=28.6

Q ss_pred             CccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCC
Q psy1672          76 NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP  134 (600)
Q Consensus        76 ~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~  134 (600)
                      +|++|+|++|+|+.+++.+|.++++|++|+|++|.|+.+++..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444444444444444444444444444444444444444444444444443

...

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.83  E-value=4.3e-08  Score=80.58  Aligned_cols=80  Identities=24%  Similarity=0.309  Sum_probs=57.2

Q ss_pred             cccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC--cee
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG--IAD  346 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G--~~~  346 (600)
                      |+.++|.|.+.+.|.+.+.|+++++......  ..  ......+ .....+.|.|.+++.+|+|.|+|.|.|..+  ...
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~--~~~~~~~-~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~   75 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGI--PE--VEEVKVP-ATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAF   75 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCc--eE--EEEEecC-CcEEEEEEEECCCCcCCCEEEEEEEEECccCccee
Confidence            6789999999999999999998775422111  00  0011111 123457899999999999999999999887  566


Q ss_pred             EEEEEEE
Q psy1672         347 ANFTLQV  353 (600)
Q Consensus       347 ~~v~L~V  353 (600)
                      +++.++|
T Consensus        76 ~sv~i~V   82 (84)
T cd05861          76 KKVNITV   82 (84)
T ss_pred             EEEEEEE
Confidence            6777766

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>KOG0532|consensus

Probab=98.82  E-value=3.2e-10  Score=119.28  Aligned_cols=166  Identities=25%  Similarity=0.400  Sum_probs=95.2

Q ss_pred             cCCCCCccCCCCC---CCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCC
Q psy1672          35 RDKFLITIPEAPE---SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL  111 (600)
Q Consensus        35 ~~~~L~~ip~~~~---~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l  111 (600)
                      +++.|..+|..-.   .......||+.|++.++|..+-.   +..|..|.|..|.+..|+ .++..+..|.+|||+.|++
T Consensus        58 s~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~---f~~Le~liLy~n~~r~ip-~~i~~L~~lt~l~ls~Nql  133 (722)
T KOG0532|consen   58 SGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACA---FVSLESLILYHNCIRTIP-EAICNLEALTFLDLSSNQL  133 (722)
T ss_pred             ccchhhcCCCccccccccchhhhhccccccccCchHHHH---HHHHHHHHHHhccceecc-hhhhhhhHHHHhhhccchh
Confidence            4455555553221   12245566777777666655432   344555555555555442 2344455555555555555


Q ss_pred             CCCCccc---------------------cCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCC
Q psy1672         112 TSIPSLT---------------------FQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA  170 (600)
Q Consensus       112 ~~l~~~~---------------------f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l  170 (600)
                      ..+|...                     ++.+..|..|+.+.|.+..+++ .+.++.+|+.|++..|++..++++ +. .
T Consensus       134 S~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps-ql~~l~slr~l~vrRn~l~~lp~E-l~-~  210 (722)
T KOG0532|consen  134 SHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS-QLGYLTSLRDLNVRRNHLEDLPEE-LC-S  210 (722)
T ss_pred             hcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH-HhhhHHHHHHHHHhhhhhhhCCHH-Hh-C
Confidence            5544421                     2234444444444444444422 234455555555556666555443 33 3


Q ss_pred             CCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         171 KSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       171 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      -.|..||++.|++..||. .|.+|..|++|.|++||+.
T Consensus       211 LpLi~lDfScNkis~iPv-~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  211 LPLIRLDFSCNKISYLPV-DFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             CceeeeecccCceeecch-hhhhhhhheeeeeccCCCC
Confidence            357889999999999985 6888999999999999975

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.81  E-value=2.6e-08  Score=80.45  Aligned_cols=68  Identities=22%  Similarity=0.426  Sum_probs=48.8

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCC----CCCeEEEEEEecCCCceeE
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE----SDSGRFYCVAENRAGIADA  347 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~----~d~G~Y~C~a~N~~G~~~~  347 (600)
                      +.|.|.+.|.|.|.|+|++++..+....    ..++.+...     .+.|.|..+..    .|.|.|+|.|+|..|.+..
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~----~~~~~~~~~-----~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAK----DPRVSMRRR-----SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcC----CCcEEEeCC-----CceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            4689999999999999999998663221    223333222     24788887642    4699999999999998754


Q ss_pred             E
Q psy1672         348 N  348 (600)
Q Consensus       348 ~  348 (600)
                      .
T Consensus        72 ~   72 (77)
T cd05875          72 N   72 (77)
T ss_pred             E
Confidence            3

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.81  E-value=4e-09  Score=112.89  Aligned_cols=148  Identities=30%  Similarity=0.448  Sum_probs=74.7

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCC-CccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEE
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLL-NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLN  129 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~-~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  129 (600)
                      ++.|++.+|.++.|+....   .+. +|+.|++++|.+..++ ..+..+++|+.|++++|+++.++.. ...++.|+.|+
T Consensus       118 l~~L~l~~n~i~~i~~~~~---~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~  192 (394)
T COG4886         118 LTSLDLDNNNITDIPPLIG---LLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLD  192 (394)
T ss_pred             eeEEecCCcccccCccccc---cchhhcccccccccchhhhh-hhhhccccccccccCCchhhhhhhh-hhhhhhhhhee
Confidence            4555555555555554443   122 4555555555555542 1244555555555555555555442 11344455555


Q ss_pred             ccCCCCCccCcc----------------------cccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCC
Q psy1672         130 LARNPISKIEKG----------------------AFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP  187 (600)
Q Consensus       130 Ls~N~i~~l~~~----------------------~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~  187 (600)
                      +++|.++.++..                      .+..+.++..+.+.+|++..+ +..+..+.+|+.|++++|.+..++
T Consensus       193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~  271 (394)
T COG4886         193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSIS  271 (394)
T ss_pred             ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cchhccccccceeccccccccccc
Confidence            555555544332                      233344444444455544443 234455556666666666666665


Q ss_pred             cccccccccccEEEccCCc
Q psy1672         188 VRSVEPLLKLMMIELHDNP  206 (600)
Q Consensus       188 ~~~~~~l~~L~~L~l~~N~  206 (600)
                      .  +..+.+++.|++.+|.
T Consensus       272 ~--~~~~~~l~~L~~s~n~  288 (394)
T COG4886         272 S--LGSLTNLRELDLSGNS  288 (394)
T ss_pred             c--ccccCccCEEeccCcc
Confidence            3  5555666666666654

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.79  E-value=2.8e-08  Score=79.96  Aligned_cols=74  Identities=19%  Similarity=0.432  Sum_probs=53.4

Q ss_pred             ceeeeEeec-CCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEE
Q psy1672         272 ATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFT  350 (600)
Q Consensus       272 v~L~C~v~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~  350 (600)
                      +.|.|.+.+ .|.+.+.|+++++.+.....  ...+..+...   ...+.|.|.+++..|+|.|+|.|.|..|..+.++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~--~~~~~~~~~~---~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNK--PDNKIKIRKK---KKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCC--CCceEEEEeC---CcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            468999874 67789999999887753321  1112222211   12358999999999999999999999998877653

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.78  E-value=3.5e-08  Score=82.45  Aligned_cols=69  Identities=26%  Similarity=0.534  Sum_probs=52.2

Q ss_pred             ccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCC-CCCCeEEEEEEecCCCcee
Q psy1672         268 SSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ-ESDSGRFYCVAENRAGIAD  346 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~-~~d~G~Y~C~a~N~~G~~~  346 (600)
                      .|..+.|.|.+.|.|.|+++|+++++.+....    ..+... .+      +.|.|.++. ..|.|.|+|+|+|..|...
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~----~~~~~~-~~------~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEP----DSRYSL-VG------GNLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEECCCCC----CCCEEE-EC------CEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            34679999999999999999999998774322    112221 22      368888887 4899999999999999764


Q ss_pred             E
Q psy1672         347 A  347 (600)
Q Consensus       347 ~  347 (600)
                      .
T Consensus        87 S   87 (91)
T cd04967          87 S   87 (91)
T ss_pred             e
Confidence            3

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.78  E-value=1.3e-08  Score=82.31  Aligned_cols=74  Identities=24%  Similarity=0.509  Sum_probs=56.2

Q ss_pred             cccccccccccccccceeeeEeecCCC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIPP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      +...+....+.+|+.++|.|.+.+.|. +.+.|+++|+.+...                   ...|.|.++ .+|+|.|+
T Consensus         3 v~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~-------------------~~~l~i~~~-~~dsG~Y~   62 (78)
T cd05752           3 VSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT-------------------TNSYRIRAA-NNDSGEYR   62 (78)
T ss_pred             EEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc-------------------CCeEEEeec-ccCCEEeE
Confidence            445567778889999999999998876 479999999766211                   126889999 99999999


Q ss_pred             EEEecCCCceeEEEEEE
Q psy1672         336 CVAENRAGIADANFTLQ  352 (600)
Q Consensus       336 C~a~N~~G~~~~~v~L~  352 (600)
                      |.|.|.  ..+..+.|.
T Consensus        63 C~a~~~--~~S~~v~l~   77 (78)
T cd05752          63 CQTQGS--SLSDPVHLE   77 (78)
T ss_pred             EECCCC--cCCCCEEEe
Confidence            999986  333334443

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=3.5e-09  Score=81.41  Aligned_cols=60  Identities=40%  Similarity=0.597  Sum_probs=39.3

Q ss_pred             CccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcC
Q psy1672         100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRL  159 (600)
Q Consensus       100 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l  159 (600)
                      +|++|+|++|+|+.+++..|..+++|++|++++|.++.+.+.+|.++++|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            566666666666666666666666666666666666666666666666666666666653

...

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.78  E-value=5e-08  Score=79.87  Aligned_cols=82  Identities=22%  Similarity=0.450  Sum_probs=62.9

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      +.+..|+.++|.|.+.+.|.+.+.|++++..+.....      ......  ......|.|.++..+|.|.|+|.|.|..|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~------~~~~~~--~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g   75 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHR------IGGYKV--RKKKWTLILESVVPSDSGKYTCIVENKYG   75 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCc------eeEEEc--cCcEEEEEEeECCcccCEEEEEEEEECCc
Confidence            4566899999999999999999999998877653321      111111  11234789999999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy1672         344 IADANFTLQV  353 (600)
Q Consensus       344 ~~~~~v~L~V  353 (600)
                      ..+.++.|.|
T Consensus        76 ~~~~~~~l~v   85 (85)
T cd05729          76 SINHTYKVDV   85 (85)
T ss_pred             eEEEEEEEeC
Confidence            9888877754

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.74  E-value=3.5e-08  Score=81.27  Aligned_cols=77  Identities=26%  Similarity=0.413  Sum_probs=60.9

Q ss_pred             ccccccccccccceeeeEeec-CCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         260 DSRYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      .+..+.+..|+.++|.|.+.+ .|.+.+.|++++..+...        . ...      .+.|.|.+++.+|+|.|+|.|
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--------~-~~~------~~~L~I~~v~~~DsG~Y~C~a   71 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--------A-MDF------NGILTIRNVQLSDAGTYVCTG   71 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--------c-ccc------CCEEEECCCCHHHCEEEEEEE
Confidence            356677889999999999974 688899999977543211        0 111      247999999999999999999


Q ss_pred             ecCCCceeEEEEE
Q psy1672         339 ENRAGIADANFTL  351 (600)
Q Consensus       339 ~N~~G~~~~~v~L  351 (600)
                      .|..|..++.+.|
T Consensus        72 ~n~~g~~~~~~~l   84 (85)
T cd05754          72 SNMLDTDEATATL   84 (85)
T ss_pred             eccCCeEeEEEEE
Confidence            9999999887765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.70  E-value=5.5e-08  Score=81.83  Aligned_cols=88  Identities=17%  Similarity=0.252  Sum_probs=59.3

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccC-C-cccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLN-N-TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~-~-~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      ..++.+..|+.+.|.|.+.+.|.+.|.|+++++.+.. . .......++.+....  .....|.|.+++.+|.|.|+|.+
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~L~I~nV~~~D~G~YtC~~   81 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKST--PTELIISISNVQLSDEGEYTCSI   81 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCC--CceEEEEECCCCcccCEEEEEEE
Confidence            4567888999999999999999999999997653211 1 100012233332222  12458999999999999999999


Q ss_pred             ecCCCceeEEEEE
Q psy1672         339 ENRAGIADANFTL  351 (600)
Q Consensus       339 ~N~~G~~~~~v~L  351 (600)
                      ... -..++...|
T Consensus        82 ~t~-~~~~~~~~~   93 (95)
T cd05882          82 FTM-PVRTAKATV   93 (95)
T ss_pred             Eee-ccccEEEEE
Confidence            982 233444443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.68  E-value=8.8e-09  Score=106.62  Aligned_cols=135  Identities=24%  Similarity=0.311  Sum_probs=62.0

Q ss_pred             CCCCccEEEeecccCcccCccccCCCCC---ccEEEccCCCCCCCC----ccccCCC-CCCCEEEccCCCCCccC----c
Q psy1672          73 GLLNLQKLFLARCHIGQIDSGALDGLTN---LIEIDLSDNLLTSIP----SLTFQSV-RFLRDLNLARNPISKIE----K  140 (600)
Q Consensus        73 ~l~~L~~L~L~~n~l~~i~~~~f~~l~~---L~~L~Ls~N~l~~l~----~~~f~~l-~~L~~L~Ls~N~i~~l~----~  140 (600)
                      .+.+|+.|+|++|.+....+..|..+.+   |++|++++|.++...    ...+..+ ++|+.|+|++|.++...    .
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~  158 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA  158 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence            3556666666665554333333333333   666666665554210    0122233 45566666666555211    1


Q ss_pred             ccccCCCCcceeeCCCCcCcccC----hhhhcCCCCCCEEEcCCCcCCCCCc----ccccccccccEEEccCCcC
Q psy1672         141 GAFQFVPGLVKLDMSESRLEHIS----PEAFTGAKSLESIKLNGNRLSHFPV----RSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       141 ~~~~~l~~L~~L~Ls~n~l~~i~----~~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~l~~N~~  207 (600)
                      ..+..+.+|+.|++++|.+....    ...+..+++|+.|+|++|.+.....    ..+..+++|+.|++.+|++
T Consensus       159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL  233 (319)
T ss_pred             HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC
Confidence            22334455566666655555311    1122334455666666555543221    1223344555566655543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.67  E-value=1.8e-07  Score=113.06  Aligned_cols=119  Identities=26%  Similarity=0.339  Sum_probs=77.8

Q ss_pred             EEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecc-cCcccCccccCCCCCccEEEccCC
Q psy1672          31 WMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIGQIDSGALDGLTNLIEIDLSDN  109 (600)
Q Consensus        31 ~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n-~l~~i~~~~f~~l~~L~~L~Ls~N  109 (600)
                      .+...+..+..+|..+...+|+.|+|.+|+|..++....   .+.+|+.|+|+++ .+..++.  +..+++|+.|+|++|
T Consensus       593 ~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~---~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        593 LLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVH---SLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDC  667 (1153)
T ss_pred             EEEecCCCCCCCCCcCCccCCcEEECcCccccccccccc---cCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCC
Confidence            344455667777776666678888888888887776553   5778888888766 3555543  667777888888775


Q ss_pred             -CCCCCCccccCCCCCCCEEEccCC-CCCccCcccccCCCCcceeeCCCC
Q psy1672         110 -LLTSIPSLTFQSVRFLRDLNLARN-PISKIEKGAFQFVPGLVKLDMSES  157 (600)
Q Consensus       110 -~l~~l~~~~f~~l~~L~~L~Ls~N-~i~~l~~~~~~~l~~L~~L~Ls~n  157 (600)
                       .+..+|. .+..+.+|+.|+|++| .+..++...  ++++|+.|+|++|
T Consensus       668 ~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc  714 (1153)
T PLN03210        668 SSLVELPS-SIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGC  714 (1153)
T ss_pred             CCccccch-hhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCC
Confidence             3555554 5667777777777765 344443321  4555555555554

syringae 6; Provisional

>KOG0532|consensus

Probab=98.66  E-value=1.1e-09  Score=115.45  Aligned_cols=164  Identities=20%  Similarity=0.242  Sum_probs=123.6

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      .-+|.|++-++...|...+. ..+..-...+|+.|++..++.. +..+..|+.|.|..|.|..++. .+.++..|.+|+|
T Consensus        52 sg~l~Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~l  128 (722)
T KOG0532|consen   52 SGRLLLSGRRLKEFPRGAAS-YDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPE-AICNLEALTFLDL  128 (722)
T ss_pred             hcccccccchhhcCCCcccc-ccccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceecch-hhhhhhHHHHhhh
Confidence            45688999999999888876 5788888899999999999654 6788899999999999999987 6788889999999


Q ss_pred             cCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccc---------------
Q psy1672         131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL---------------  195 (600)
Q Consensus       131 s~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~---------------  195 (600)
                      +.|+++.++... ..| -|+.|.+++|+++.++. .++.+..|..|+.+.|.+.+++.. +..+.               
T Consensus       129 s~NqlS~lp~~l-C~l-pLkvli~sNNkl~~lp~-~ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~l~~l  204 (722)
T KOG0532|consen  129 SSNQLSHLPDGL-CDL-PLKVLIVSNNKLTSLPE-EIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNHLEDL  204 (722)
T ss_pred             ccchhhcCChhh-hcC-cceeEEEecCccccCCc-ccccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhhhhhC
Confidence            999999886654 344 38888888888888854 455677777777777777766532 11222               


Q ss_pred             -------cccEEEccCCcCc----cccccccchhhhc
Q psy1672         196 -------KLMMIELHDNPWV----CDCNMRSIKMWLA  221 (600)
Q Consensus       196 -------~L~~L~l~~N~~~----C~C~l~~l~~w~~  221 (600)
                             .|..||++.|.+.    |.|+++.++....
T Consensus       205 p~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~L  241 (722)
T KOG0532|consen  205 PEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQL  241 (722)
T ss_pred             CHHHhCCceeeeecccCceeecchhhhhhhhheeeee
Confidence                   3556777777653    6677766654433

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.66  E-value=1.2e-07  Score=78.84  Aligned_cols=84  Identities=20%  Similarity=0.411  Sum_probs=60.3

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +..+.+..|+.+.|.|.+.+ |.+.+.|++++..+.....  ...+....       ...|.|.+++.+|+|.|+|.|.|
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~--~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~a~~   72 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEE--PEERLLVT-------EDGLLIRSVSPADAGVYTCQSVE   72 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccC--cCceEEEc-------CCCEEEccCCHHHCEEEEEEEec
Confidence            34567788999999999987 8889999998875543211  01122221       12589999999999999999997


Q ss_pred             CCC-ceeEEEEEEEE
Q psy1672         341 RAG-IADANFTLQVT  354 (600)
Q Consensus       341 ~~G-~~~~~v~L~V~  354 (600)
                      ..+ ....++.|+|.
T Consensus        73 ~~~~~~~~~~~l~V~   87 (89)
T cd04979          73 HGFKQTLATYSLNVL   87 (89)
T ss_pred             CccceeEeEEEEEEe
Confidence            654 45666777763

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.64  E-value=1.6e-07  Score=77.38  Aligned_cols=69  Identities=25%  Similarity=0.527  Sum_probs=54.8

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +....+..|+++.|.|.+.+ +.++|.|.++|+.+....     .+..+ .++      .|.|.+++.+|+|.|+|.|.+
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~-----~r~~~-~~~------~L~I~nv~~~DsG~Y~C~a~e   69 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPES-----AKYLL-YRD------GLLIFNASEADAGRYQCLSVE   69 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCC-----ceEEE-ECC------cEEEeCCCHHHCEEEEEEEEe
Confidence            45667889999999999865 678999999999876432     23332 223      699999999999999999998


Q ss_pred             CC
Q psy1672         341 RA  342 (600)
Q Consensus       341 ~~  342 (600)
                      ..
T Consensus        70 ~~   71 (87)
T cd05873          70 KS   71 (87)
T ss_pred             cc
Confidence            75

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>KOG3513|consensus

Probab=98.64  E-value=1.6e-07  Score=106.79  Aligned_cols=94  Identities=31%  Similarity=0.478  Sum_probs=78.3

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.........++..|+++++.|++.|.|.|.|.|.+||.++.....   .++..+ .+      +.|.|.+++..|+|.
T Consensus       331 ~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r---~~~~~i-~~------g~L~is~v~~~dsg~  400 (1051)
T KOG3513|consen  331 PPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAER---DPRYKI-DD------GTLIISNVQESDSGV  400 (1051)
T ss_pred             CchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCC---CcceEE-eC------CEEEEEecccccCeE
Confidence            46666667778889999999999999999999999999999875442   122322 23      379999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEcc
Q psy1672         334 FYCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      |+|.|+|..|...+++.|.|....
T Consensus       401 YQC~A~Nk~G~i~anA~L~V~a~~  424 (1051)
T KOG3513|consen  401 YQCIAENKYGTIYANAELKVLASA  424 (1051)
T ss_pred             EEeeeecccceEeeeeEEEEEccC
Confidence            999999999999999999997653

>PLN03150 hypothetical protein; Provisional

Probab=98.62  E-value=1e-07  Score=107.58  Aligned_cols=84  Identities=26%  Similarity=0.284  Sum_probs=46.8

Q ss_pred             ceEEEeeCCCCCC-CChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEE
Q psy1672          51 TQVLDMSGNNLQI-LPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLN  129 (600)
Q Consensus        51 l~~L~Ls~n~L~~-l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  129 (600)
                      ++.|+|++|.+.. +|.. +.  .+.+|+.|+|++|.+....+..|..+++|+.|+|++|+|+...+..+..+++|+.|+
T Consensus       420 v~~L~L~~n~L~g~ip~~-i~--~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPND-IS--KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEECCCCCccccCCHH-Hh--CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence            6667777777763 3333 32  466666666666666544444455566666666666655543333455555555555


Q ss_pred             ccCCCCCc
Q psy1672         130 LARNPISK  137 (600)
Q Consensus       130 Ls~N~i~~  137 (600)
                      |++|.++.
T Consensus       497 Ls~N~l~g  504 (623)
T PLN03150        497 LNGNSLSG  504 (623)
T ss_pred             CcCCcccc
Confidence            55555443

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.60  E-value=2.3e-07  Score=78.12  Aligned_cols=89  Identities=19%  Similarity=0.299  Sum_probs=59.8

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeecc--CCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLL--NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~--~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      ..++.+.+|+.++|.|.+.+.|.+.+.|++.++.+.  .........|+.+....  .....|.|.+++.+|+|.|+|.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~--~~~~sL~I~~v~~~DsG~Y~C~~   81 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRAS--WHELSISISDVSLSDEGQYTCSL   81 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECC--CCcEEEEECcCCcccCEEEEEEe
Confidence            456788999999999999999999999987433211  11101122344332221  13458999999999999999999


Q ss_pred             ecCCCceeEEEEEE
Q psy1672         339 ENRAGIADANFTLQ  352 (600)
Q Consensus       339 ~N~~G~~~~~v~L~  352 (600)
                      .+..+. .....|.
T Consensus        82 ~t~~~~-~~~~~l~   94 (95)
T cd07701          82 FTMPVK-TSKAYLT   94 (95)
T ss_pred             EeecCc-cEEEEEE
Confidence            985433 4444444

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>PLN03150 hypothetical protein; Provisional

Probab=98.60  E-value=9.7e-08  Score=107.79  Aligned_cols=109  Identities=25%  Similarity=0.313  Sum_probs=77.7

Q ss_pred             ccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCC
Q psy1672         101 LIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNG  180 (600)
Q Consensus       101 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~  180 (600)
                      ++.|+|++|.++...+..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|++....+..++++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            67788888887755555677788888888888888766666677788888888888888776677777888888888888


Q ss_pred             CcCCCCCcccccc-cccccEEEccCCcCcc
Q psy1672         181 NRLSHFPVRSVEP-LLKLMMIELHDNPWVC  209 (600)
Q Consensus       181 N~l~~l~~~~~~~-l~~L~~L~l~~N~~~C  209 (600)
                      |.+....+..+.. +.++..+++.+|+..|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcccc
Confidence            8777443333433 2345566777776555

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.59  E-value=1.5e-08  Score=104.83  Aligned_cols=155  Identities=27%  Similarity=0.312  Sum_probs=76.6

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCC---CCccEEEeecccCccc----CccccCCC-CCccEEEccCCCCCCCC----ccc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGL---LNLQKLFLARCHIGQI----DSGALDGL-TNLIEIDLSDNLLTSIP----SLT  118 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l---~~L~~L~L~~n~l~~i----~~~~f~~l-~~L~~L~Ls~N~l~~l~----~~~  118 (600)
                      ++.|++++|.+.......+.  .+   ++|+.|++++|++...    ....+..+ ++|+.|+|++|.++.-.    ...
T Consensus        83 L~~L~l~~~~~~~~~~~~~~--~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLE--SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             eeEEEccCCCCChhHHHHHH--HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            66666666666533322222  12   2366666666665421    11223444 56666666666665211    112


Q ss_pred             cCCCCCCCEEEccCCCCCccC----cccccCCCCcceeeCCCCcCcccCh----hhhcCCCCCCEEEcCCCcCCCCCccc
Q psy1672         119 FQSVRFLRDLNLARNPISKIE----KGAFQFVPGLVKLDMSESRLEHISP----EAFTGAKSLESIKLNGNRLSHFPVRS  190 (600)
Q Consensus       119 f~~l~~L~~L~Ls~N~i~~l~----~~~~~~l~~L~~L~Ls~n~l~~i~~----~~~~~l~~L~~L~Ls~N~l~~l~~~~  190 (600)
                      +..+.+|+.|+|++|.++...    ...+..+++|+.|+|++|.+.....    ..+..+++|+.|++++|.+.......
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            344455666666666655211    1123334566666666666653322    22344566666666666665422111


Q ss_pred             cc-----ccccccEEEccCCcC
Q psy1672         191 VE-----PLLKLMMIELHDNPW  207 (600)
Q Consensus       191 ~~-----~l~~L~~L~l~~N~~  207 (600)
                      +.     ....|+.|++.+|.+
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCC
Confidence            11     124566666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1859|consensus

Probab=98.59  E-value=1e-09  Score=118.13  Aligned_cols=129  Identities=22%  Similarity=0.308  Sum_probs=104.0

Q ss_pred             CccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCC
Q psy1672          76 NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMS  155 (600)
Q Consensus        76 ~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls  155 (600)
                      .|...+++.|.+..++ .++.-++.|+.|||++|+++.+.  .+..++.|+.|||++|.+..++.-....+. |+.|.|+
T Consensus       165 ~L~~a~fsyN~L~~mD-~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMD-ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhHH-HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            4555566667776664 45777889999999999999876  577889999999999999988765555555 9999999


Q ss_pred             CCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc-ccccccccccEEEccCCcCccc
Q psy1672         156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV-RSVEPLLKLMMIELHDNPWVCD  210 (600)
Q Consensus       156 ~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~l~~N~~~C~  210 (600)
                      +|.++.+  ..+.++.+|+.||+++|-|..... ..+..+..|+.|+|++||+-|.
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            9999887  467789999999999998876542 3456678899999999999885

>KOG3513|consensus

Probab=98.58  E-value=1.3e-07  Score=107.40  Aligned_cols=81  Identities=36%  Similarity=0.578  Sum_probs=71.1

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      ..+..|..+.+.|.+.+.|.|.++|.+.++.+.+      ..|+.+.++|      +|.|.+++.+|.|.|+|+|+|..|
T Consensus       436 ~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~------~~r~~i~edG------tL~I~n~t~~DaG~YtC~A~N~~G  503 (1051)
T KOG3513|consen  436 VMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQ------SGRIRILEDG------TLEISNVTRSDAGKYTCVAENKLG  503 (1051)
T ss_pred             EEEEeCCeEEEeeccCCCCcceEEEEcCCccccc------CceEEECCCC------cEEecccCcccCcEEEEEEEcccC
Confidence            4677899999999999999999999997774433      4577788887      899999999999999999999999


Q ss_pred             ceeEEEEEEEEEc
Q psy1672         344 IADANFTLQVTYR  356 (600)
Q Consensus       344 ~~~~~v~L~V~~~  356 (600)
                      .++....|.|...
T Consensus       504 ~a~~~~~L~Vkd~  516 (1051)
T KOG3513|consen  504 KAESTGNLIVKDA  516 (1051)
T ss_pred             ccceEEEEEEecC
Confidence            9999999988654

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.57  E-value=3.7e-07  Score=76.26  Aligned_cols=78  Identities=21%  Similarity=0.364  Sum_probs=59.9

Q ss_pred             ccccccccceeeeEeec-----CCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         264 VEAVSSENATVVCRVDS-----IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g-----~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      ..+..|..+.|.|...+     .|.|.+.|+++++.+....      +. +..+      +.|.|.+++.+|+|.|+|.|
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~------~~-~~~~------~~L~I~~v~~~DsG~YtC~~   71 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDR------KR-FVKG------SKLLIQNVTEEDAGNYTCKL   71 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCc------cE-EecC------CEEEEeeCChhhCEEEEEEE
Confidence            45678999999997753     2578999999998876432      11 1122      47999999999999999999


Q ss_pred             ecCCCceeEEEEEEEE
Q psy1672         339 ENRAGIADANFTLQVT  354 (600)
Q Consensus       339 ~N~~G~~~~~v~L~V~  354 (600)
                      .|..|.....++..+.
T Consensus        72 ~n~~~~~~~~~t~t~~   87 (92)
T cd05757          72 TFTHNGKQYNVTRTIS   87 (92)
T ss_pred             EecCCCEEEEEEEEEE
Confidence            9999988777666553

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>PLN03210 Resistant to P

Probab=98.56  E-value=4.4e-07  Score=109.78  Aligned_cols=152  Identities=19%  Similarity=0.365  Sum_probs=73.7

Q ss_pred             CCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEE-------------------------------eeccc
Q psy1672          38 FLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLF-------------------------------LARCH   86 (600)
Q Consensus        38 ~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~-------------------------------L~~n~   86 (600)
                      .+..+|... . +++.|+|++|.+..+|...    .+.+|+.|.                               |++|.
T Consensus       716 ~L~~~p~~~-~-nL~~L~L~~n~i~~lP~~~----~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~  789 (1153)
T PLN03210        716 RLKSFPDIS-T-NISWLDLDETAIEEFPSNL----RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP  789 (1153)
T ss_pred             Ccccccccc-C-CcCeeecCCCccccccccc----cccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence            355555432 2 3899999999988887643    244444444                               44442


Q ss_pred             C-cccCccccCCCCCccEEEccCC-CCCCCCccccCCCCCCCEEEccCCC-CCccCcccccCCCCcceeeCCCCcCcccC
Q psy1672          87 I-GQIDSGALDGLTNLIEIDLSDN-LLTSIPSLTFQSVRFLRDLNLARNP-ISKIEKGAFQFVPGLVKLDMSESRLEHIS  163 (600)
Q Consensus        87 l-~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~Ls~N~-i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~  163 (600)
                      . ..+ +..|.++++|+.|+|++| .++.+|...  .+++|+.|+|++|. +..+ +.   ...+|+.|+|++|.|+.+ 
T Consensus       790 ~l~~l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~-p~---~~~nL~~L~Ls~n~i~~i-  861 (1153)
T PLN03210        790 SLVEL-PSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTF-PD---ISTNISDLNLSRTGIEEV-  861 (1153)
T ss_pred             Ccccc-ChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCccccc-cc---cccccCEeECCCCCCccC-
Confidence            2 222 233445555555555443 344444321  34455555555443 2111 11   123455555555555554 


Q ss_pred             hhhhcCCCCCCEEEcCC-CcCCCCCcccccccccccEEEccC
Q psy1672         164 PEAFTGAKSLESIKLNG-NRLSHFPVRSVEPLLKLMMIELHD  204 (600)
Q Consensus       164 ~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~l~~  204 (600)
                      |..+..+++|+.|+|++ +.+..++. .+..++.|+.+++.+
T Consensus       862 P~si~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~  902 (1153)
T PLN03210        862 PWWIEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSD  902 (1153)
T ss_pred             hHHHhcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCC
Confidence            23444555555555554 34444432 233444455555443

syringae 6; Provisional

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.55  E-value=3.4e-07  Score=75.57  Aligned_cols=83  Identities=24%  Similarity=0.326  Sum_probs=57.0

Q ss_pred             cccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCcee
Q psy1672         269 SENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD  346 (600)
Q Consensus       269 G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~  346 (600)
                      |+.+.|.|.+.+.+.  ..+.|.++++......... ..+...  .......+.|.|.+++.+|+|.|+|.|+|..|...
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~-~~~~~~--~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~   77 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVS-ENRRSL--QEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK   77 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecc-cccccc--cccceeeeEEEEecCCcccCEEEEEEEeecceEec
Confidence            678999999987654  4779988775432111000 001111  11123457899999999999999999999999888


Q ss_pred             EEEEEEEE
Q psy1672         347 ANFTLQVT  354 (600)
Q Consensus       347 ~~v~L~V~  354 (600)
                      ....|.|.
T Consensus        78 ~~t~~~V~   85 (86)
T cd05862          78 NSTIVIVH   85 (86)
T ss_pred             ccEEEEEe
Confidence            88877773

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.54  E-value=5.3e-08  Score=104.28  Aligned_cols=149  Identities=31%  Similarity=0.401  Sum_probs=115.2

Q ss_pred             EEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCC-CccEEEccCCCCCCCCccccCCCCCCCEEEcc
Q psy1672          53 VLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLT-NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLA  131 (600)
Q Consensus        53 ~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls  131 (600)
                      .|+++.|.+..-.....   .+..++.|.+.+|.+..|++. ...+. +|+.|++++|.+..++. .+..+++|+.|+++
T Consensus        97 ~l~~~~~~~~~~~~~~~---~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~-~~~~l~~L~~L~l~  171 (394)
T COG4886          97 SLDLNLNRLRSNISELL---ELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLS  171 (394)
T ss_pred             eeeccccccccCchhhh---cccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhh-hhhccccccccccC
Confidence            47777777744443443   568899999999999999764 34453 89999999999999863 46789999999999


Q ss_pred             CCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCcc
Q psy1672         132 RNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC  209 (600)
Q Consensus       132 ~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C  209 (600)
                      +|++..++.. ...+++|+.|++++|++..++.. ...+..|+.|.+++|.+..+. ..+..+.++..+.+.+|++.+
T Consensus       172 ~N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~-~~~~~~~~l~~l~l~~n~~~~  246 (394)
T COG4886         172 FNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELL-SSLSNLKNLSGLELSNNKLED  246 (394)
T ss_pred             Cchhhhhhhh-hhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecc-hhhhhcccccccccCCceeee
Confidence            9999998653 23788999999999999999653 345666999999999644443 345666777777788887665

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.53  E-value=9.5e-07  Score=74.13  Aligned_cols=88  Identities=18%  Similarity=0.308  Sum_probs=70.7

Q ss_pred             ccccccccccceeeeEeecCCCCe-eEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      ..++|.+|+.+.|.|.+++.|+|+ +.|.+++..+.....    ........++....+.|.+..+..+|.|.|+|.|.|
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~----~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N   86 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSD----HYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSN   86 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCcccc----ceeEEeccCceEEEEEEEEeecChhhCcEEEEEEEC
Confidence            456789999999999999999997 999998887665442    112222223345778999999999999999999999


Q ss_pred             CCCceeEEEEEEE
Q psy1672         341 RAGIADANFTLQV  353 (600)
Q Consensus       341 ~~G~~~~~v~L~V  353 (600)
                      ..+.++..+.|.|
T Consensus        87 ~~~~~s~tF~l~v   99 (101)
T cd05860          87 SDASASVTFNVYV   99 (101)
T ss_pred             CCCeEEEEEEEEE
Confidence            9999888888876

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>KOG3207|consensus

Probab=98.53  E-value=1.6e-08  Score=103.73  Aligned_cols=156  Identities=19%  Similarity=0.169  Sum_probs=101.6

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCc-cccCCCCCccEEEccCCCCCC--CCccccCCCCCCCE
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS-GALDGLTNLIEIDLSDNLLTS--IPSLTFQSVRFLRD  127 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~  127 (600)
                      ++.|||+.|-+..+..-.--...|++|+.|+|+.|++..... ..-..+..|+.|.|+.+.|+.  +.+ .....++|+.
T Consensus       148 v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~-~~~~fPsl~~  226 (505)
T KOG3207|consen  148 VRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQW-ILLTFPSLEV  226 (505)
T ss_pred             ceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHH-HHHhCCcHHH
Confidence            677777777776544332222367777777777776643321 111245667777777777762  211 2344677888


Q ss_pred             EEccCCCCCccCcccccCCCCcceeeCCCCcCcccCh-hhhcCCCCCCEEEcCCCcCCCCCccc------ccccccccEE
Q psy1672         128 LNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISP-EAFTGAKSLESIKLNGNRLSHFPVRS------VEPLLKLMMI  200 (600)
Q Consensus       128 L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~------~~~l~~L~~L  200 (600)
                      |+|..|....+.......+..|++|+|++|++-.... ...+.++.|+.|+++.+.++++..-.      ...+++|+.|
T Consensus       227 L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L  306 (505)
T KOG3207|consen  227 LYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYL  306 (505)
T ss_pred             hhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceee
Confidence            8888885444434445567788899999988877642 24567888999999999888765322      2456788999


Q ss_pred             EccCCcC
Q psy1672         201 ELHDNPW  207 (600)
Q Consensus       201 ~l~~N~~  207 (600)
                      ++..|++
T Consensus       307 ~i~~N~I  313 (505)
T KOG3207|consen  307 NISENNI  313 (505)
T ss_pred             ecccCcc
Confidence            9998885

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.50  E-value=2.5e-07  Score=77.43  Aligned_cols=74  Identities=18%  Similarity=0.309  Sum_probs=55.7

Q ss_pred             cccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         263 YVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ...+.+|+.+.|.|... |.|.+.+.|++++..+.-.    ...+..+...     .+.|.|.+++.+|+|.|+|.|+|.
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~----~d~r~~~~~~-----~G~L~fs~v~~~D~g~Y~C~A~n~   82 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIP----EDGRRFVSQT-----NGNLYIAKVEASDRGNYSCFVSSP   82 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccc----cCCCeEEeCC-----CCcEEEeecCHhhCceeEEEEEec
Confidence            45678899999999776 8899999999987543211    1223333331     248999999999999999999999


Q ss_pred             CCce
Q psy1672         342 AGIA  345 (600)
Q Consensus       342 ~G~~  345 (600)
                      ++..
T Consensus        83 ~~~~   86 (96)
T cd05727          83 SSTK   86 (96)
T ss_pred             ccCC
Confidence            8654

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.47  E-value=3.3e-07  Score=75.13  Aligned_cols=66  Identities=20%  Similarity=0.234  Sum_probs=52.1

Q ss_pred             cccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         263 YVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ...+.+|+.++|.|.+. +.+.+.+.|+++++.+....                 ..+.|.|.+++.+|+|.|+|.|.|.
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-----------------~~~~l~I~~~~~~dsG~Y~C~~~~~   70 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-----------------SNSNLSIPQATLSDSGSYHCSGIIG   70 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-----------------CCceEEECccCHHHCEEEEEEEEeC
Confidence            34678999999999986 46677899999886553111                 1237999999999999999999999


Q ss_pred             CCce
Q psy1672         342 AGIA  345 (600)
Q Consensus       342 ~G~~  345 (600)
                      .|..
T Consensus        71 ~~~~   74 (83)
T cd05753          71 SYDY   74 (83)
T ss_pred             Ccee
Confidence            8753

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.47  E-value=8.7e-07  Score=73.95  Aligned_cols=84  Identities=23%  Similarity=0.372  Sum_probs=57.0

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe-cC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE-NR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~-N~  341 (600)
                      .+.+.+|+.+.|.|.. +.|.|.+.|++...............+...       ..+.|.|.+++.+|+|.|+|.|. |.
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-------~~~~L~I~~~~~~DsG~Y~C~a~~~~   76 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-------TERGLLLRSLQRSDAGVYTCTAVEHS   76 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-------ecCeEEEeeCChhHCEEEEEEEEccC
Confidence            3456789999999997 478899999983321110000001112211       12469999999999999999998 57


Q ss_pred             CCceeEEEEEEEE
Q psy1672         342 AGIADANFTLQVT  354 (600)
Q Consensus       342 ~G~~~~~v~L~V~  354 (600)
                      .+.....+.|+|.
T Consensus        77 ~~~~~~~~~l~v~   89 (91)
T cd05871          77 FSQTLAKYTLHVI   89 (91)
T ss_pred             CeEEEEEEEEEEe
Confidence            7767777888774

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.45  E-value=8e-07  Score=74.79  Aligned_cols=89  Identities=22%  Similarity=0.309  Sum_probs=58.9

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeec-cCCc-ccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLL-LNNT-AFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l-~~~~-~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      ++.+.+.+|+.++|.|.+.+.+.+.+.|++.++.+ .... ......++.+....  .....|.|.+++.+|+|.|+|.+
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~L~I~~v~~~DsG~Y~C~~   81 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFS--ANELSISISNVSLSDEGRYTCSL   81 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCC--CCeeEEEEccCCcccCEEEEEEE
Confidence            46678889999999999998888999998643221 1000 00012333332211  12357999999999999999999


Q ss_pred             ecCCCceeEEEEEE
Q psy1672         339 ENRAGIADANFTLQ  352 (600)
Q Consensus       339 ~N~~G~~~~~v~L~  352 (600)
                      .+... .++.+.|.
T Consensus        82 ~~~~~-~~~~~~~~   94 (95)
T cd05717          82 YTMPV-QTAKATVT   94 (95)
T ss_pred             ecCCC-ceEEEEEE
Confidence            98753 35555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.42  E-value=1.1e-06  Score=66.69  Aligned_cols=63  Identities=30%  Similarity=0.549  Sum_probs=49.1

Q ss_pred             ccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         268 SSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      +|+.++|.|.+.+.|.+.+.|++++..+..        ......     ....|.|.+++..|.|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--------~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--------SNRLSA-----SGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--------CCEEec-----CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            478899999998889999999998876551        111111     124799999999999999999999865

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.42  E-value=4.7e-07  Score=80.49  Aligned_cols=127  Identities=22%  Similarity=0.392  Sum_probs=73.8

Q ss_pred             CCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCccc
Q psy1672          63 ILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGA  142 (600)
Q Consensus        63 ~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~  142 (600)
                      .|+..+|.  ++.+|+.+.+.+ .+..|...+|.++.+|+.+.+..+ +..+....|.++.+|+.+.+.. .+..+....
T Consensus         2 ~i~~~~F~--~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~   76 (129)
T PF13306_consen    2 SIGNNAFY--NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNA   76 (129)
T ss_dssp             EE-TTTTT--T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTT
T ss_pred             EECHHHHh--CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccc
Confidence            35566676  677888888874 677888888888888888888775 8888888888887788888865 666677777


Q ss_pred             ccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccc
Q psy1672         143 FQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKL  197 (600)
Q Consensus       143 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  197 (600)
                      |..+.+|+.+.+..+ +..+....|.+. +|+.+.+.. .+..++...|..+.+|
T Consensus        77 F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   77 FSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            888888888888765 777777777777 888888775 5677777777766655

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.39  E-value=8.1e-07  Score=74.41  Aligned_cols=82  Identities=15%  Similarity=0.218  Sum_probs=53.7

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcc--c------CccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTA--F------SSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~--~------~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      +.+..|+.|+|.|.+.+.+.+.|.|+++++.......  +      ....++.....+.......|+|.+++.+|+|+|+
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            3567899999999999999999999976533211110  0      0011111111110112357999999999999999


Q ss_pred             EEEecCCCce
Q psy1672         336 CVAENRAGIA  345 (600)
Q Consensus       336 C~a~N~~G~~  345 (600)
                      |.+.|..+..
T Consensus        82 C~v~~~~~~~   91 (94)
T cd07690          82 CEVEDKKEEV   91 (94)
T ss_pred             EEECCccceE
Confidence            9999987653

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>KOG0531|consensus

Probab=98.38  E-value=5.2e-08  Score=104.95  Aligned_cols=149  Identities=29%  Similarity=0.387  Sum_probs=100.7

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      ++.+++..|.|..+....-   .+.+|..|++.+|+|..+... +..+.+|++|+|++|.|+.+..  +..+..|+.|++
T Consensus        74 l~~l~l~~n~i~~~~~~l~---~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l  147 (414)
T KOG0531|consen   74 LKELNLRQNLIAKILNHLS---KLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL  147 (414)
T ss_pred             HHhhccchhhhhhhhcccc---cccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc--hhhccchhhhee
Confidence            5666677777766333222   567888888888888777542 5667788888888888887765  556667888888


Q ss_pred             cCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCcc
Q psy1672         131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC  209 (600)
Q Consensus       131 s~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C  209 (600)
                      ++|.|..+..  |..+..|+.+++++|++..+.......+.+|+.+++.+|.+..+.  .+..+..+..+++.+|.+..
T Consensus       148 ~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~  222 (414)
T KOG0531|consen  148 SGNLISDISG--LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISK  222 (414)
T ss_pred             ccCcchhccC--CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHhhccccccee
Confidence            8888877633  455778888888888888775410356777778888888777664  23333444445666665543

>KOG1644|consensus

Probab=98.37  E-value=3.6e-07  Score=85.06  Aligned_cols=102  Identities=24%  Similarity=0.368  Sum_probs=49.0

Q ss_pred             cEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccCh-hhhcCCCCCCEEEcCC
Q psy1672         102 IEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISP-EAFTGAKSLESIKLNG  180 (600)
Q Consensus       102 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~  180 (600)
                      ..+||++|.|..+..  |..+++|.+|.|++|+|+.+.+..-..+++|..|.|.+|.|..+.. +-+..++.|++|.+-+
T Consensus        45 d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   45 DAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             ceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            344444444444332  3444444444444444444444333334444444444444443321 1233455666666666


Q ss_pred             CcCCCCC---cccccccccccEEEccCC
Q psy1672         181 NRLSHFP---VRSVEPLLKLMMIELHDN  205 (600)
Q Consensus       181 N~l~~l~---~~~~~~l~~L~~L~l~~N  205 (600)
                      |.+....   ...+..+++|++||+..-
T Consensus       123 Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  123 NPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             CchhcccCceeEEEEecCcceEeehhhh
Confidence            6555432   234556677777776653

>KOG3207|consensus

Probab=98.35  E-value=9.6e-08  Score=98.15  Aligned_cols=156  Identities=20%  Similarity=0.264  Sum_probs=111.9

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCc-cccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEE
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS-GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLN  129 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  129 (600)
                      |+.|+|+.|.+..-..+... ..+.+|+.|.|+.|+|+.-+- .....+++|+.|+|..|....+....+.-+..|+.|+
T Consensus       174 Le~LNls~Nrl~~~~~s~~~-~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~Ld  252 (505)
T KOG3207|consen  174 LENLNLSSNRLSNFISSNTT-LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELD  252 (505)
T ss_pred             chhcccccccccCCccccch-hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcc
Confidence            99999999998743332221 257899999999999974322 2245789999999999964434333455677899999


Q ss_pred             ccCCCCCccCc-ccccCCCCcceeeCCCCcCcccChhh------hcCCCCCCEEEcCCCcCCCCCc-ccccccccccEEE
Q psy1672         130 LARNPISKIEK-GAFQFVPGLVKLDMSESRLEHISPEA------FTGAKSLESIKLNGNRLSHFPV-RSVEPLLKLMMIE  201 (600)
Q Consensus       130 Ls~N~i~~l~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~------~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~  201 (600)
                      |++|.+-.... .....++.|+.|+++.+.+..+.--.      ...+++|++|++..|++..++. ..+..+.+|+.+.
T Consensus       253 Ls~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~  332 (505)
T KOG3207|consen  253 LSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR  332 (505)
T ss_pred             ccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence            99999876643 34567899999999999988764221      2467899999999999987652 3334445566665


Q ss_pred             ccCCcC
Q psy1672         202 LHDNPW  207 (600)
Q Consensus       202 l~~N~~  207 (600)
                      +..|++
T Consensus       333 ~~~n~l  338 (505)
T KOG3207|consen  333 ITLNYL  338 (505)
T ss_pred             cccccc
Confidence            555554

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.35  E-value=9.4e-07  Score=73.83  Aligned_cols=73  Identities=25%  Similarity=0.380  Sum_probs=56.8

Q ss_pred             ccccccccccceeeeE-eecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe-EEEEEEe
Q psy1672         262 RYVEAVSSENATVVCR-VDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG-RFYCVAE  339 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~-v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G-~Y~C~a~  339 (600)
                      ..+.+.+|+.+.|.|. ..|.|.|.|.|..++....     ....|+.+..+|      .|.|.+++..|.| .|.|.|+
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i-----~~~~Ri~~~~~G------nL~fs~v~~~D~g~~Y~C~a~   79 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHI-----TQDERVSMGQNG------NLYFANVEEQDSHPDYICHAH   79 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccc-----cccccEEECCCc------eEEEEEEehhhCCCCeEEEEE
Confidence            5577889999999997 6799999999997653321     123455554444      8999999999999 7999999


Q ss_pred             cCCCce
Q psy1672         340 NRAGIA  345 (600)
Q Consensus       340 N~~G~~  345 (600)
                      |.+...
T Consensus        80 ~~~~~~   85 (95)
T cd05845          80 FPGLRT   85 (95)
T ss_pred             cccccc
Confidence            987543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.34  E-value=2.6e-06  Score=68.73  Aligned_cols=67  Identities=16%  Similarity=0.291  Sum_probs=51.5

Q ss_pred             ceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCce
Q psy1672         272 ATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA  345 (600)
Q Consensus       272 v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~  345 (600)
                      +.|.|.+. |.|+++|.|+++++.+.....       ....+..+...+.|.+......|.+.|+|.|.|.++..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-------~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVIS-------QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcc-------cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            67999887 789999999999998864321       01222334456789998888889899999999998764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>smart00409 IG Immunoglobulin

Probab=98.33  E-value=7.2e-06  Score=66.05  Aligned_cols=82  Identities=35%  Similarity=0.648  Sum_probs=62.2

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEc-CeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWN-GRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      .+.+..|+.+.|.|.+.+.+.+.+.|+++ +..+...      .+........   ...|.|.++...|.|.|+|.+.+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~------~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~v~~~   73 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES------GRFSVSRSGS---NSTLTISNVTPEDSGTYTCAATNS   73 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC------CcEEEEEcCC---eeEEEEEeeccccCeEEEEEEEcC
Confidence            45567899999999999888889999997 6665411      1222222221   458999999999999999999999


Q ss_pred             CCceeEEEEEEE
Q psy1672         342 AGIADANFTLQV  353 (600)
Q Consensus       342 ~G~~~~~v~L~V  353 (600)
                      .+.....+.|.|
T Consensus        74 ~~~~~~~~~l~V   85 (86)
T smart00409       74 SGSASSTTTLTV   85 (86)
T ss_pred             CCeEEEEEEEEE
Confidence            888777766655

>smart00410 IG_like Immunoglobulin like

Probab=98.33  E-value=7.2e-06  Score=66.05  Aligned_cols=82  Identities=35%  Similarity=0.648  Sum_probs=62.2

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEc-CeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWN-GRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      .+.+..|+.+.|.|.+.+.+.+.+.|+++ +..+...      .+........   ...|.|.++...|.|.|+|.+.+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~------~~~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~v~~~   73 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES------GRFSVSRSGS---NSTLTISNVTPEDSGTYTCAATNS   73 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC------CcEEEEEcCC---eeEEEEEeeccccCeEEEEEEEcC
Confidence            45567899999999999888889999997 6665411      1222222221   458999999999999999999999


Q ss_pred             CCceeEEEEEEE
Q psy1672         342 AGIADANFTLQV  353 (600)
Q Consensus       342 ~G~~~~~v~L~V  353 (600)
                      .+.....+.|.|
T Consensus        74 ~~~~~~~~~l~V   85 (86)
T smart00410       74 SGSASSTTTLTV   85 (86)
T ss_pred             CCeEEEEEEEEE
Confidence            888777766655

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>KOG4579|consensus

Probab=98.33  E-value=2.4e-08  Score=87.15  Aligned_cols=134  Identities=23%  Similarity=0.242  Sum_probs=76.3

Q ss_pred             ccEEEeecccCcccCc--cccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeC
Q psy1672          77 LQKLFLARCHIGQIDS--GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM  154 (600)
Q Consensus        77 L~~L~L~~n~l~~i~~--~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~L  154 (600)
                      +..++|++|.|..|..  ..+.....|+..+|++|.+..+|+..-...+.+++|+|++|.|+.++.+ +..++.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccc
Confidence            3344455554444321  1123334455556666666666654333444566666666666666544 666666777777


Q ss_pred             CCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCcccccc
Q psy1672         155 SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNM  213 (600)
Q Consensus       155 s~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l  213 (600)
                      +.|.+... +..+..+.+|..|+..+|.+..++.+.|.. ...-.+.+.++||.-.|..
T Consensus       108 ~~N~l~~~-p~vi~~L~~l~~Lds~~na~~eid~dl~~s-~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  108 RFNPLNAE-PRVIAPLIKLDMLDSPENARAEIDVDLFYS-SLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             ccCccccc-hHHHHHHHhHHHhcCCCCccccCcHHHhcc-ccHHHHHhcCCcccccCcc
Confidence            77666655 334444677777777777777777653322 2333345677887766643

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.31  E-value=1.6e-06  Score=69.82  Aligned_cols=71  Identities=27%  Similarity=0.574  Sum_probs=54.3

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+....                   ..+.+.+++..|.|.|+|.|.|..+
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~y~C~~~~~~~   69 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-------------------NGLFIPNVSPEDSGNYTCRASNGSG   69 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-------------------SEEEESSEEGGGTEEEEEEEEETTE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-------------------eeeeeeeeccccCEEEEEEEEeCCC
Confidence            457789999999999999889999999876554211                   1266778889999999999999664


Q ss_pred             -ceeEEEEEEE
Q psy1672         344 -IADANFTLQV  353 (600)
Q Consensus       344 -~~~~~v~L~V  353 (600)
                       ..+..+.|+|
T Consensus        70 ~~~s~~~~v~V   80 (80)
T PF13895_consen   70 SNTSTSVNVTV   80 (80)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CeEeeeEEeeC
Confidence             3455555554

...

>KOG4221|consensus

Probab=98.30  E-value=2.2e-06  Score=97.41  Aligned_cols=91  Identities=25%  Similarity=0.460  Sum_probs=69.9

Q ss_pred             ccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      .+...+....+.+|+.+.|.|.+.|.|+|.|.|.++|..+.-.+     .++.+.      ..+.|.|.+++..|+|.|+
T Consensus       239 ~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-----~rivl~------g~~slliS~a~~~dSg~Yt  307 (1381)
T KOG4221|consen  239 VFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-----YRIVLV------GGSSLLISNATDDDSGKYT  307 (1381)
T ss_pred             eeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecc-----eEEEEe------cccceEEeccccccCceEE
Confidence            34455677888999999999999999999999999998776432     122221      1358999999999999999


Q ss_pred             EEEecCCCceeEEEEEEEEEcc
Q psy1672         336 CVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       336 C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      |.|.|......+.+.+.|...+
T Consensus       308 C~Atn~~D~idasaev~V~a~P  329 (1381)
T KOG4221|consen  308 CRATNTNDSIDASAEVTVLAPP  329 (1381)
T ss_pred             EEecCCCcccccceEEEEEcCC
Confidence            9999966555666666665443

>KOG0531|consensus

Probab=98.30  E-value=1.1e-07  Score=102.46  Aligned_cols=150  Identities=25%  Similarity=0.270  Sum_probs=116.9

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      .+.++..++.+...... ..  .+..++.+.+..|.+..+.. .+..+.+|..|++.+|.|+.+.. .+..+++|+.|+|
T Consensus        51 ~~~~~~~~~~~~~~~~~-~~--~l~~l~~l~l~~n~i~~~~~-~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~l  125 (414)
T KOG0531|consen   51 LEEIDLIFNLDGSDEDL-VE--SLTSLKELNLRQNLIAKILN-HLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDL  125 (414)
T ss_pred             hhhhcchhccccchhhh-HH--HhHhHHhhccchhhhhhhhc-ccccccceeeeeccccchhhccc-chhhhhcchheec
Confidence            66677777665544333 12  46788888899998887432 36788899999999999998875 2667889999999


Q ss_pred             cCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc-ccccccccccEEEccCCcCcc
Q psy1672         131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV-RSVEPLLKLMMIELHDNPWVC  209 (600)
Q Consensus       131 s~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~l~~N~~~C  209 (600)
                      ++|.|+.+..  +..+..|+.|++++|.|..+  ..+..+..|+.+++++|++..+.. . ...+.+++.+++.+|.+..
T Consensus       126 s~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  126 SFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             cccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            9999998854  56777899999999999988  446668899999999999998875 2 4677888889999998665


Q ss_pred             c
Q psy1672         210 D  210 (600)
Q Consensus       210 ~  210 (600)
                      -
T Consensus       201 i  201 (414)
T KOG0531|consen  201 I  201 (414)
T ss_pred             c
Confidence            3

>TIGR00864 PCC polycystin cation channel protein

Probab=98.29  E-value=3.9e-07  Score=111.98  Aligned_cols=78  Identities=28%  Similarity=0.598  Sum_probs=67.4

Q ss_pred             EcCCCcCCCCCcccccccccccEEEccCCcCccccccccchhhhcccCC-C--CCCCCCCCCccccccccccccccccCc
Q psy1672         177 KLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKN-V--PVQPACTGPERLSGKVFSDLHADDFAC  253 (600)
Q Consensus       177 ~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~-~--~~~~~C~~p~~l~g~~l~~l~~~~~~C  253 (600)
                      ||++|+|+.|+...|..+.+|+.|+|.+|||.|||++.||..|+.+... +  .....|..|..++|+.+.++...+|.|
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C   80 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGC   80 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccCCC
Confidence            5789999999999999999999999999999999999999999985532 1  145689999999999999998877666


Q ss_pred             c
Q psy1672         254 K  254 (600)
Q Consensus       254 ~  254 (600)
                      .
T Consensus        81 ~   81 (2740)
T TIGR00864        81 D   81 (2740)
T ss_pred             C
Confidence            3

Note: this model has been restricted to the amino half because for technical reasons.

>PHA02785 IL-beta-binding protein; Provisional

Probab=98.27  E-value=5.6e-06  Score=86.10  Aligned_cols=85  Identities=27%  Similarity=0.355  Sum_probs=60.9

Q ss_pred             cccccccccccceeeeEeecCCC---CeeEEEEcCeeccCCcccCccceEEEee-----CCceeeeeeEEEecCCCCCCe
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPP---AAISWYWNGRLLLNNTAFSSYQRIFVIE-----QGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~---p~i~W~~~g~~l~~~~~~~~~~~~~~~~-----~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      +..+++..|+.+.|.|.+.|.|.   +.+.|.++|..+....... ..+.....     ++.....+.|+|.+++.+|.|
T Consensus       227 p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G  305 (326)
T PHA02785        227 PEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDG-DGRISVANKIYTTDKRRVITSRLNINPVKEEDAT  305 (326)
T ss_pred             CCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCC-ceeEEEecCccccccceeeeEEEEECCcchhcCe
Confidence            45667788999999999998886   4899999998875432111 12222211     111223568999999999999


Q ss_pred             EEEEEEecCCCcee
Q psy1672         333 RFYCVAENRAGIAD  346 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~  346 (600)
                      .|+|.|.|..|...
T Consensus       306 ~Y~C~A~n~~~~~~  319 (326)
T PHA02785        306 TFTCMAFTIPSISK  319 (326)
T ss_pred             eeEEEEEeccCceE
Confidence            99999999986543

>KOG1644|consensus

Probab=98.24  E-value=1.7e-06  Score=80.65  Aligned_cols=135  Identities=20%  Similarity=0.239  Sum_probs=104.5

Q ss_pred             ccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccC
Q psy1672          41 TIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQ  120 (600)
Q Consensus        41 ~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~  120 (600)
                      +.|..+....-+.++|.+.++..+...-.   -+.+...++|++|.+..++.  |..++.|..|.|++|+|+.|.+..-.
T Consensus        11 q~pqy~~~~~e~e~~LR~lkip~ienlg~---~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~   85 (233)
T KOG1644|consen   11 QAPQYINSVRERELDLRGLKIPVIENLGA---TLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDT   85 (233)
T ss_pred             hchhhhhhccccccccccccccchhhccc---cccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhh
Confidence            34444444335778888888877665222   46688899999999988865  88999999999999999999987666


Q ss_pred             CCCCCCEEEccCCCCCccCc-ccccCCCCcceeeCCCCcCcccC---hhhhcCCCCCCEEEcCC
Q psy1672         121 SVRFLRDLNLARNPISKIEK-GAFQFVPGLVKLDMSESRLEHIS---PEAFTGAKSLESIKLNG  180 (600)
Q Consensus       121 ~l~~L~~L~Ls~N~i~~l~~-~~~~~l~~L~~L~Ls~n~l~~i~---~~~~~~l~~L~~L~Ls~  180 (600)
                      .+++|..|.|.+|.|+.+.. .-+..++.|+.|.+-+|.+....   ...+..+++|+.||++.
T Consensus        86 ~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   86 FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            77889999999999887654 34677899999999999876542   23456789999998754

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.23  E-value=9e-06  Score=66.29  Aligned_cols=75  Identities=28%  Similarity=0.492  Sum_probs=51.5

Q ss_pred             ceeeeEeec-CCCCeeEEEEcCeeccCCcccCccceEEEeeCCc-eeeeeeEEEecCCCCCCeEEEEEEecCCCce--eE
Q psy1672         272 ATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE-YERKSSLVLTNAQESDSGRFYCVAENRAGIA--DA  347 (600)
Q Consensus       272 v~L~C~v~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~-~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~--~~  347 (600)
                      +.|.|.+.| .|.+.|.|+++|+.+....    . ...+..++. +...+.|.+......|.|.|+|.|.|.....  ++
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~----~-~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~   76 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGAT----Y-SKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKET   76 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCce----e-eeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEE
Confidence            579999986 6888999999998875432    1 111222332 3345678888777778889999999987544  44


Q ss_pred             EEEE
Q psy1672         348 NFTL  351 (600)
Q Consensus       348 ~v~L  351 (600)
                      +++|
T Consensus        77 s~~l   80 (82)
T cd05759          77 SVTL   80 (82)
T ss_pred             EEEE
Confidence            4444

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.18  E-value=6.3e-06  Score=63.51  Aligned_cols=63  Identities=27%  Similarity=0.518  Sum_probs=44.5

Q ss_pred             cccceeeeEe-ecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         269 SENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       269 G~~v~L~C~v-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      |+.++|.|.+ .+.+...+.|+++++......      .......+.. ....|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~------~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGS------TTNRSTNSVS-STSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEE------EEEEEETTTE-EEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcc------eeEeecccce-eeeEEEEccCCHHHCEEEEEEC
Confidence            6889999999 678888999999876543221      1112222211 1114999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>KOG1859|consensus

Probab=98.16  E-value=3.5e-08  Score=106.71  Aligned_cols=131  Identities=28%  Similarity=0.350  Sum_probs=102.4

Q ss_pred             CCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEE
Q psy1672          49 ELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDL  128 (600)
Q Consensus        49 ~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L  128 (600)
                      ..|...+++.|.|..+....-   -++.|+.|+|++|+++...  ++..+++|++|||+.|.|+.+|......+. |..|
T Consensus       164 n~L~~a~fsyN~L~~mD~SLq---ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L  237 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDESLQ---LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLL  237 (1096)
T ss_pred             hhHhhhhcchhhHHhHHHHHH---HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heee
Confidence            347778888888887765543   4789999999999998886  588899999999999999998875544554 9999


Q ss_pred             EccCCCCCccCcccccCCCCcceeeCCCCcCcccCh-hhhcCCCCCCEEEcCCCcCCCCC
Q psy1672         129 NLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISP-EAFTGAKSLESIKLNGNRLSHFP  187 (600)
Q Consensus       129 ~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~  187 (600)
                      +|++|.++.+.  .+.++.+|+.||++.|-|.+... ..+..+..|+.|+|.+|.+---+
T Consensus       238 ~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  238 NLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             eecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            99999988874  36788999999999997766432 22345678888999999876433

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.13  E-value=1.8e-05  Score=67.14  Aligned_cols=85  Identities=18%  Similarity=0.344  Sum_probs=52.9

Q ss_pred             cccceeeeEeecCC---CCeeEEEEcC--eec---cCCcc-----cCc-cceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         269 SENATVVCRVDSIP---PAAISWYWNG--RLL---LNNTA-----FSS-YQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       269 G~~v~L~C~v~g~P---~p~i~W~~~g--~~l---~~~~~-----~~~-~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |++++|.|......   ...+.|++..  ..+   .....     ... ..|+.+..+.......+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            67899999886221   2368898843  111   00000     000 1233332221111245899999999999999


Q ss_pred             EEEEecCCCceeEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V  353 (600)
                      +|.+.|..+..++.+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998888888787776

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>KOG4658|consensus

Probab=98.13  E-value=2.4e-06  Score=99.03  Aligned_cols=140  Identities=21%  Similarity=0.285  Sum_probs=113.2

Q ss_pred             CCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeeccc--CcccCccccCCCCCccEEEccCC-CCCC
Q psy1672          37 KFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCH--IGQIDSGALDGLTNLIEIDLSDN-LLTS  113 (600)
Q Consensus        37 ~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~--l~~i~~~~f~~l~~L~~L~Ls~N-~l~~  113 (600)
                      .++..+|........+.+.+.+|.+..++...    ..++|++|-+..|.  +..+....|..++.|+.|||++| .+..
T Consensus       511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~----~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~  586 (889)
T KOG4658|consen  511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS----ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK  586 (889)
T ss_pred             cCccccccccchhheeEEEEeccchhhccCCC----CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc
Confidence            46666777666655899999999998887655    45689999999996  78888888999999999999977 5677


Q ss_pred             CCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCc
Q psy1672         114 IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNR  182 (600)
Q Consensus       114 l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~  182 (600)
                      +|. .++.+-+|++|+|++..+..++. .+.++..|.+|++..+.-....+.....+.+|++|.+..-.
T Consensus       587 LP~-~I~~Li~LryL~L~~t~I~~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  587 LPS-SIGELVHLRYLDLSDTGISHLPS-GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             CCh-HHhhhhhhhcccccCCCccccch-HHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            776 67889999999999999998854 57889999999999876555446777779999999987654

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.10  E-value=1.4e-05  Score=78.33  Aligned_cols=71  Identities=24%  Similarity=0.437  Sum_probs=53.9

Q ss_pred             ccccccccceeeeEeec-----CCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         264 VEAVSSENATVVCRVDS-----IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g-----~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      ..+.+|+.+.|.|.+.+     .|.|+|+|+++++.+....      +..+..++     +.|.|.+++.+|+|.|+|.|
T Consensus       139 ~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~------r~~~~~~~-----~~L~I~~V~~~DsG~YtC~a  207 (227)
T PHA02826        139 YQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTD------RIQLRNNN-----STLVIKSATHDDSGIYTCNL  207 (227)
T ss_pred             ceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCC------CEEEeCCC-----CEEEECcCCHHhCEEEEEEE
Confidence            45567999999999863     4578999999999876432      33333222     37999999999999999999


Q ss_pred             ecCCCce
Q psy1672         339 ENRAGIA  345 (600)
Q Consensus       339 ~N~~G~~  345 (600)
                      +...+..
T Consensus       208 ~~~~~g~  214 (227)
T PHA02826        208 RFNKNSN  214 (227)
T ss_pred             EEeECCE
Confidence            9875443

>KOG4579|consensus

Probab=98.09  E-value=3e-07  Score=80.48  Aligned_cols=115  Identities=20%  Similarity=0.272  Sum_probs=93.4

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      +..++|+.+.|-.|++..........|+.++|++|.+...++..-..++.++.|+|++|.|..+|.. +..++.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccc
Confidence            5668888888887777665444667888889999999988877666777899999999999999986 888999999999


Q ss_pred             cCCCCCccCcccccCCCCcceeeCCCCcCcccChhhh
Q psy1672         131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAF  167 (600)
Q Consensus       131 s~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~  167 (600)
                      +.|++...+. .+..+.+|..|+..+|.+..|+.+.|
T Consensus       108 ~~N~l~~~p~-vi~~L~~l~~Lds~~na~~eid~dl~  143 (177)
T KOG4579|consen  108 RFNPLNAEPR-VIAPLIKLDMLDSPENARAEIDVDLF  143 (177)
T ss_pred             ccCccccchH-HHHHHHhHHHhcCCCCccccCcHHHh
Confidence            9999887644 45558889999999999988876644

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.09  E-value=6.9e-06  Score=64.97  Aligned_cols=73  Identities=29%  Similarity=0.586  Sum_probs=47.4

Q ss_pred             cccccccccccccccccceeeeEeecCC-CCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |.+...+.......+. +.|.|.+.+.+ .+.+.|+ ....           .............+.|.|.++..+|.|.
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~-----------~~~~~~~~~~~~~~~L~i~~v~~~~~g~   68 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNP-----------SFNSNSRGSSSSNSTLTISNVTRSDNGT   68 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEE-----------EEEEEEEEEEEEEEEEEESSCCGGGTEE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCC-----------ceeeeeeeccceeeEEEEccCCHHhCcE
Confidence            3444444444443344 99999999877 7899999 1100           0111111122345689999999999999


Q ss_pred             EEEEEec
Q psy1672         334 FYCVAEN  340 (600)
Q Consensus       334 Y~C~a~N  340 (600)
                      |+|+|+|
T Consensus        69 y~C~a~N   75 (75)
T PF13927_consen   69 YTCIASN   75 (75)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            9999987

...

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.08  E-value=2.3e-05  Score=68.43  Aligned_cols=88  Identities=19%  Similarity=0.306  Sum_probs=56.2

Q ss_pred             ccccccccccccceeeeEeecC----CCCeeEEEEcCee-------c--cCCcccC-----ccceEEEeeCCceeeeeeE
Q psy1672         260 DSRYVEAVSSENATVVCRVDSI----PPAAISWYWNGRL-------L--LNNTAFS-----SYQRIFVIEQGEYERKSSL  321 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~----P~p~i~W~~~g~~-------l--~~~~~~~-----~~~~~~~~~~g~~~~~s~L  321 (600)
                      .+..+.+..|+.++|.|.....    +..+|.|.+....       +  .....+.     ..+|+.+..+. ...+.+|
T Consensus         4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~-~~~daSI   82 (116)
T cd05879           4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP-SRKDGSI   82 (116)
T ss_pred             ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC-CcCeeEE
Confidence            3456788899999999998753    3458999552110       0  0001110     01234333322 2356789


Q ss_pred             EEecCCCCCCeEEEEEEecCCCceeEE
Q psy1672         322 VLTNAQESDSGRFYCVAENRAGIADAN  348 (600)
Q Consensus       322 ~I~~v~~~d~G~Y~C~a~N~~G~~~~~  348 (600)
                      .|.+++.+|+|.|+|.+.|..+.....
T Consensus        83 ~I~nv~~sD~G~Y~C~v~n~p~~~~~~  109 (116)
T cd05879          83 VIHNLDYTDNGTFTCDVKNPPDIVGKS  109 (116)
T ss_pred             EEccCCcccCEEEEEEEEcCCCcCCce
Confidence            999999999999999999998754333

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.07  E-value=9.1e-06  Score=72.16  Aligned_cols=117  Identities=18%  Similarity=0.355  Sum_probs=76.3

Q ss_pred             CceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEE
Q psy1672          50 LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLN  129 (600)
Q Consensus        50 ~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  129 (600)
                      .++.+.+.. .+..|....|.  ++.+|+.|.+.++ +..+...+|.++.+|+.+.+.+ .+..++...|..+.+|+.+.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~--~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFS--NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTT--T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCEEEECC-CeeEeChhhcc--ccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            388888875 68899999997  7889999999885 9999999999998999999976 78888888999999999999


Q ss_pred             ccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCC
Q psy1672         130 LARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLE  174 (600)
Q Consensus       130 Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~  174 (600)
                      +..+ +..+....|.++ +|+.+.+.. .+..+....|.++++|+
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            9876 888888889988 999998876 77788888888887764

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.05  E-value=2.5e-05  Score=65.43  Aligned_cols=75  Identities=17%  Similarity=0.347  Sum_probs=53.0

Q ss_pred             cccccccceeeeEe-e----cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         265 EAVSSENATVVCRV-D----SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       265 ~v~~G~~v~L~C~v-~----g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      .+..|....|.|.- .    ..+.+++.|+++++.+....     .+.....+     .+.|.|.++..+|.|.|+|.|.
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~-----~~~~~~~~-----~~~L~I~~v~~~D~G~YtC~~~   75 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDN-----EKFYSLKG-----STYLHIIDVSLNDSGYYTCKLQ   75 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCC-----cceEecCC-----CCEEEEEEcChhhCEEEEEEEE
Confidence            45678888999952 2    34667999999998875332     11111122     2369999999999999999999


Q ss_pred             cCCCceeEEE
Q psy1672         340 NRAGIADANF  349 (600)
Q Consensus       340 N~~G~~~~~v  349 (600)
                      |..|...-.+
T Consensus        76 ~~~~g~~y~v   85 (95)
T cd05897          76 FTHEGKKYNI   85 (95)
T ss_pred             EeeCCEEEEE
Confidence            9987664433

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.97  E-value=4.1e-05  Score=62.69  Aligned_cols=71  Identities=21%  Similarity=0.382  Sum_probs=53.2

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      +.+++..|..+.|.|...+. .+.+.|+++|..+...      .++.....|       |.|..++..|+|.|.|.+. .
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~------~r~~~~~~G-------LlI~~~~~~dsG~Y~C~s~-E   68 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQ------FSYRVGTDG-------LLILVTSPEHSGTYRCYSE-E   68 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCC------cceEEeCCC-------CEEEECCHhhCEEEEEEEe-c
Confidence            45678899999999999864 6799999999876532      233333333       7799999999999999988 3


Q ss_pred             CCceeE
Q psy1672         342 AGIADA  347 (600)
Q Consensus       342 ~G~~~~  347 (600)
                      .|....
T Consensus        69 ~gf~~~   74 (85)
T cd05872          69 EGFQQL   74 (85)
T ss_pred             CCCeEE
Confidence            354443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.95  E-value=6.6e-05  Score=64.42  Aligned_cols=85  Identities=24%  Similarity=0.306  Sum_probs=55.9

Q ss_pred             ccccceeeeEeecCC------CCeeEEEEcC---e---ec-c-CCcc---cCcc-ceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         268 SSENATVVCRVDSIP------PAAISWYWNG---R---LL-L-NNTA---FSSY-QRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P------~p~i~W~~~g---~---~l-~-~~~~---~~~~-~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .|++|+|.|.....+      ...|.|++..   .   .+ . ....   ...+ .++...  .......+|+|.+++.+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~--~~~~~~~sL~I~~v~~s   78 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY--PADPGDASLVITDLRLE   78 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee--CCCCCcceEEECCCCHH
Confidence            388999999987543      4689999952   1   00 0 0000   0000 111111  11124578999999999


Q ss_pred             CCeEEEEEEecCCCceeEEEEEEEE
Q psy1672         330 DSGRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       330 d~G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |+|.|.|.+.+..+..++.+.|.|.
T Consensus        79 D~G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          79 DSGRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             HCEEEEEEEEcCCCceEEEEEEEEE
Confidence            9999999999988888888888875

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>KOG1909|consensus

Probab=97.94  E-value=4.4e-06  Score=83.96  Aligned_cols=157  Identities=23%  Similarity=0.271  Sum_probs=106.2

Q ss_pred             CceEEEeeCCCCCC--CCh--hhhcccCCCCccEEEeecccCcccCccc-------------cCCCCCccEEEccCCCCC
Q psy1672          50 LTQVLDMSGNNLQI--LPK--EAFRRAGLLNLQKLFLARCHIGQIDSGA-------------LDGLTNLIEIDLSDNLLT  112 (600)
Q Consensus        50 ~l~~L~Ls~n~L~~--l~~--~~f~~~~l~~L~~L~L~~n~l~~i~~~~-------------f~~l~~L~~L~Ls~N~l~  112 (600)
                      .+++|+||+|-|..  ++.  ...  ..+..|++|.|.||++.......             ...-++|+.+...+|++.
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll--~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELL--SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHH--HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            38999999998862  222  122  25889999999999886543322             233468899999999887


Q ss_pred             CCCc----cccCCCCCCCEEEccCCCCCcc----CcccccCCCCcceeeCCCCcCcccC----hhhhcCCCCCCEEEcCC
Q psy1672         113 SIPS----LTFQSVRFLRDLNLARNPISKI----EKGAFQFVPGLVKLDMSESRLEHIS----PEAFTGAKSLESIKLNG  180 (600)
Q Consensus       113 ~l~~----~~f~~l~~L~~L~Ls~N~i~~l----~~~~~~~l~~L~~L~Ls~n~l~~i~----~~~~~~l~~L~~L~Ls~  180 (600)
                      .-+.    ..|+..+.|+.+.+..|.|..-    ....|..+++|+.|+|..|-++.-.    ...+..+++|+.|++++
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d  250 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD  250 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence            5443    2466677888888888877532    1245667888888888888776533    34556677888888888


Q ss_pred             CcCCCCCcccc-----cccccccEEEccCCcCc
Q psy1672         181 NRLSHFPVRSV-----EPLLKLMMIELHDNPWV  208 (600)
Q Consensus       181 N~l~~l~~~~~-----~~l~~L~~L~l~~N~~~  208 (600)
                      |.+..-....|     ...+.|+++.+.+|-+.
T Consensus       251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  251 CLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             cccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            87775442222     23467788888777654

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.93  E-value=6.1e-05  Score=65.20  Aligned_cols=88  Identities=20%  Similarity=0.265  Sum_probs=57.1

Q ss_pred             ccccceeeeEeecCC----------CCeeEEEEc--Ceecc-----CCc--ccCcc-ceEEEeeCCceeeeeeEEEecCC
Q psy1672         268 SSENATVVCRVDSIP----------PAAISWYWN--GRLLL-----NNT--AFSSY-QRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P----------~p~i~W~~~--g~~l~-----~~~--~~~~~-~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      .|++++|.|.....+          ...|.|++.  ++...     ...  ..+.+ +|+.+..+........|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            488999999887533          257999994  22111     000  00111 23333221111234679999999


Q ss_pred             CCCCeEEEEEEecCCCceeEEEEEEEEE
Q psy1672         328 ESDSGRFYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      .+|+|.|.|.+.......++.+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999999877788888888853

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=97.89  E-value=2.5e-05  Score=76.57  Aligned_cols=90  Identities=18%  Similarity=0.267  Sum_probs=59.8

Q ss_pred             ccccccccccceeeeEeecCC-----------CCeeEEEEcCeec--cCCcccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         262 RYVEAVSSENATVVCRVDSIP-----------PAAISWYWNGRLL--LNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P-----------~p~i~W~~~g~~l--~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..+.+.+|+.+.|.|.+.+.|           .+.+.|++.+...  ...............+.+  .....|.|.+++.
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~--~r~~~L~I~~v~~  107 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIG--DRSENLWIGNVIN  107 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCcccccccccccee--cCCCeEEECCCCh
Confidence            456788999999999987644           3489999976431  110000000000000000  1134899999999


Q ss_pred             CCCeEEEEEEecCCCceeEEEEEEE
Q psy1672         329 SDSGRFYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      +|+|.|+|.|.|..|..+..+.|.|
T Consensus       108 ~DsG~Y~C~a~N~~~~~~~~i~L~V  132 (227)
T PHA02826        108 IDEGIYICTISSGNICEESTIRLTF  132 (227)
T ss_pred             HHCEEEEEEEEECCcceEEEEEEEE
Confidence            9999999999999988888887777

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.88  E-value=8.3e-05  Score=64.44  Aligned_cols=87  Identities=16%  Similarity=0.275  Sum_probs=55.7

Q ss_pred             ccccceeeeEeecCC------------CCeeEEEEc--Cee---ccC--Cc--ccCcc-ceEEEeeCCceeeeeeEEEec
Q psy1672         268 SSENATVVCRVDSIP------------PAAISWYWN--GRL---LLN--NT--AFSSY-QRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P------------~p~i~W~~~--g~~---l~~--~~--~~~~~-~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      .|++++|.|......            .+.|.|++.  ++.   +..  ..  ..+.+ .|+.+...........|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            488999999887432            468999983  211   100  00  01112 244443211112356899999


Q ss_pred             CCCCCCeEEEEEEecCCCceeEEEEEEEE
Q psy1672         326 AQESDSGRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       326 v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      ++.+|+|.|+|.+.+.....+..+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999999887777777777763

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.87  E-value=8.4e-05  Score=62.26  Aligned_cols=79  Identities=22%  Similarity=0.322  Sum_probs=55.6

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeecc--CCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLL--NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~--~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      ..++++.+|++++|.|.+.+.....+.|++.++.+.  .........|+......  .....|.|.+++.+|.|.|+|.+
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~--~~~~tL~I~~vq~~D~G~Y~Cqv   81 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFS--SNELRVSLSNVSLSDEGRYFCQL   81 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCC--CCEEEEEECcCCcccCEEEEEEE
Confidence            356788999999999999987777899998664431  11111223455444311  12347999999999999999998


Q ss_pred             ecC
Q psy1672         339 ENR  341 (600)
Q Consensus       339 ~N~  341 (600)
                      ...
T Consensus        82 ~t~   84 (95)
T cd05881          82 YTD   84 (95)
T ss_pred             Ecc
Confidence            764

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=97.87  E-value=9.8e-05  Score=63.32  Aligned_cols=85  Identities=22%  Similarity=0.347  Sum_probs=56.5

Q ss_pred             ccccceeeeEeecCC------CCeeEEEEcCe------e--ccCCc---ccCc-cceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         268 SSENATVVCRVDSIP------PAAISWYWNGR------L--LLNNT---AFSS-YQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P------~p~i~W~~~g~------~--l~~~~---~~~~-~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .|++++|.|.....|      ...|.|++...      .  +....   .++. ..|..+...  .....+|.|.+++.+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~--~~~~~sL~I~~v~~~   78 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA--HDLDASLVITDLRLE   78 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC--CCCcEEEEEccCChH
Confidence            378999999887553      35799999421      0  01000   0011 123332211  123568999999999


Q ss_pred             CCeEEEEEEecCCCceeEEEEEEEE
Q psy1672         330 DSGRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       330 d~G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |+|.|+|.+.+..+..+..+.|.|.
T Consensus        79 DsG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          79 DYGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             HCEEEEEEEEecccceEEEEEEEEE
Confidence            9999999999999988888888884

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=97.86  E-value=8.8e-05  Score=62.59  Aligned_cols=84  Identities=15%  Similarity=0.251  Sum_probs=54.7

Q ss_pred             cccccccccceeeeEee-----------cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         263 YVEAVSSENATVVCRVD-----------SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~-----------g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      ...+.+|+.+.|.|...           ......+.|++++..+....... ....++...+     ..|.|.++..+|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~-~~~~Ri~~~~-----~~Lwf~Pa~~eDS   82 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEII-FDGVRMSKEE-----DSIWFRPAELQDS   82 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCccc-ccceeEEEeC-----CEEEEEeCChhhC
Confidence            45677899999999762           11234799999874443322110 1111222222     3799999999999


Q ss_pred             eEEEEEEecCCCceeEEEEEE
Q psy1672         332 GRFYCVAENRAGIADANFTLQ  352 (600)
Q Consensus       332 G~Y~C~a~N~~G~~~~~v~L~  352 (600)
                      |.|+|++.|...-....+.|.
T Consensus        83 G~Y~C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          83 GLYTCVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             eEEEEEECCCCcceEEEEEEE
Confidence            999999999876555555444

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.85  E-value=0.00013  Score=61.88  Aligned_cols=82  Identities=24%  Similarity=0.446  Sum_probs=52.2

Q ss_pred             cceeeeEeecCC---CCeeEEEEc--Ce-e--c---c---CCcccCcc-ceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         271 NATVVCRVDSIP---PAAISWYWN--GR-L--L---L---NNTAFSSY-QRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       271 ~v~L~C~v~g~P---~p~i~W~~~--g~-~--l---~---~~~~~~~~-~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      +++|.|.....+   ...|.|++.  +. .  +   .   ....+..+ +|..+..+. ....+.|+|.+++.+|+|.|+
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~-~~~~~sL~I~nv~~sD~GtY~   80 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPN-PIADGALILRNAVQADEGKYK   80 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCC-CCCceEEEEecCccccceEEE
Confidence            688999887443   448999983  21 1  1   0   11112222 344433221 123568999999999999999


Q ss_pred             EEEec-CCCceeEEEEEEE
Q psy1672         336 CVAEN-RAGIADANFTLQV  353 (600)
Q Consensus       336 C~a~N-~~G~~~~~v~L~V  353 (600)
                      |.+.+ +.|..++.+.|.|
T Consensus        81 C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          81 CRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEEeCCCCCeeeEEEEEe
Confidence            99998 6676777777765

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.85  E-value=0.0001  Score=63.48  Aligned_cols=83  Identities=22%  Similarity=0.268  Sum_probs=55.7

Q ss_pred             ccccccccccccceeeeEeecCCCCeeEEEEcCe--ec----cC--CcccCccceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGR--LL----LN--NTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~--~l----~~--~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      .+..+.+..|++++|.|.+.+.+...+.|++...  ..    ..  ........++.+..+. ......|.|.+++.+|+
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-~~~~~~L~I~~~~~~Ds   82 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDK-SRKSSSLHISAAQLSDS   82 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcc-cCCEEEEEECCCCHHHC
Confidence            4567788999999999999977788999998431  10    00  0000112333333221 11346899999999999


Q ss_pred             eEEEEEEecCCC
Q psy1672         332 GRFYCVAENRAG  343 (600)
Q Consensus       332 G~Y~C~a~N~~G  343 (600)
                      |.|.|.+.+..+
T Consensus        83 G~Y~C~~~~~~~   94 (109)
T cd04983          83 AVYFCALSESGG   94 (109)
T ss_pred             EEEEEEEecCCC
Confidence            999999998654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.80  E-value=0.00011  Score=62.90  Aligned_cols=83  Identities=18%  Similarity=0.203  Sum_probs=53.1

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeecc--------CC---ccc--CccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLL--------NN---TAF--SSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~--------~~---~~~--~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..+.+|+++.|.|.........+.|++......        ..   ...  ...+|..++.+|      +|.|.+++..|
T Consensus         8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng------SL~I~~v~~~D   81 (105)
T cd05774           8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG------SLLIQNVTQKD   81 (105)
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC------cEEEecCCccc
Confidence            446789999999966544445899999421110        00   000  012334444444      89999999999


Q ss_pred             CeEEEEEEecCCC-ceeEEEEEE
Q psy1672         331 SGRFYCVAENRAG-IADANFTLQ  352 (600)
Q Consensus       331 ~G~Y~C~a~N~~G-~~~~~v~L~  352 (600)
                      +|.|+|.+.|... ..+..+.|.
T Consensus        82 ~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          82 TGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             CEEEEEEEEeCCccEEEEEEEEE
Confidence            9999999999874 344444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.80  E-value=8.6e-05  Score=61.74  Aligned_cols=78  Identities=22%  Similarity=0.315  Sum_probs=51.2

Q ss_pred             cccceeeeEeecCCCCeeEEEEcCeeccCCc----------cc--CccceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNGRLLLNNT----------AF--SSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~----------~~--~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      |++|+|.|.........|.|++.........          ..  ....|..+..      .++|.|.+++.+|+|.|+|
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~------~~sL~I~~l~~~DsG~Y~c   74 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP------NGSLLIQNLTKEDSGTYTL   74 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC------CceEEEccCCchhcEEEEE
Confidence            7899999988776667899999543211100          00  0012222222      3589999999999999999


Q ss_pred             EEecCCCc-eeEEEEEE
Q psy1672         337 VAENRAGI-ADANFTLQ  352 (600)
Q Consensus       337 ~a~N~~G~-~~~~v~L~  352 (600)
                      .+....|. ..+.+.|+
T Consensus        75 ~v~~~~~~~~~~~~~l~   91 (92)
T cd05741          75 QIISTNGVTENAKFFLR   91 (92)
T ss_pred             EEEcCCCcEEEEEEEEE
Confidence            99988754 34555554

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.76  E-value=0.00022  Score=60.09  Aligned_cols=82  Identities=16%  Similarity=0.290  Sum_probs=52.0

Q ss_pred             ccceeeeEeecCC---CCeeEEEEcCee----c--cC---CcccCc--cceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         270 ENATVVCRVDSIP---PAAISWYWNGRL----L--LN---NTAFSS--YQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       270 ~~v~L~C~v~g~P---~p~i~W~~~g~~----l--~~---~~~~~~--~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      ++|+|.|.....+   ...|.|++....    +  ..   ...+..  ..|+.+..+.  .....|.|.+++.+|+|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~sL~I~~v~~~D~G~Y~   78 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS--LEDATISISNLRLEDEGNYI   78 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC--CCceEEEEccCCcccCEEEE
Confidence            4689999887644   447999994321    0  00   000000  1222222211  14568999999999999999


Q ss_pred             EEEec-CCCceeEEEEEEE
Q psy1672         336 CVAEN-RAGIADANFTLQV  353 (600)
Q Consensus       336 C~a~N-~~G~~~~~v~L~V  353 (600)
                      |.+.+ ..|..++.+.|.|
T Consensus        79 C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          79 CEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEEEeCCCCcEEEEEEEEe
Confidence            99875 6688888887776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.75  E-value=0.00011  Score=61.23  Aligned_cols=66  Identities=14%  Similarity=0.241  Sum_probs=48.9

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ...+..|++|+|.|... .+...+.|+++|.......          ..  .....+.+.|.+++.+|+|.|+|.+.|.
T Consensus        10 ~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~----------~~--~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          10 SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK----------PP--EPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc----------cC--CCceeEEEEccCCChhHCEEEEEEEECC
Confidence            34677999999999886 6677899999886432110          00  0112357899999999999999999986

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PHA02785 IL-beta-binding protein; Provisional

Probab=97.73  E-value=0.00012  Score=76.27  Aligned_cols=80  Identities=23%  Similarity=0.352  Sum_probs=60.6

Q ss_pred             cccccccccceeeeEe-----ecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEE
Q psy1672         263 YVEAVSSENATVVCRV-----DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCV  337 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v-----~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~  337 (600)
                      ...+..|+.+.+.|.+     .|.|.+++.|+++|....         +.....++     ..|.|.++..+|+|.|+|+
T Consensus        35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---------~~~~~~~g-----~~l~i~~~~~~DsG~Y~C~  100 (326)
T PHA02785         35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND---------RIIPIDNG-----SNMLILNPTQSDSGIYICI  100 (326)
T ss_pred             hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---------eEEEccCC-----ceEEEcccCcccCeEEEEE
Confidence            3445579999999987     688889999999874211         12222233     2477999999999999999


Q ss_pred             EecCCCceeEEEEEEEEEc
Q psy1672         338 AENRAGIADANFTLQVTYR  356 (600)
Q Consensus       338 a~N~~G~~~~~v~L~V~~~  356 (600)
                      |.|..|....++.|.|...
T Consensus       101 a~N~~g~~~~s~~L~V~~~  119 (326)
T PHA02785        101 TKNETYCDMMSLNLTIVSV  119 (326)
T ss_pred             EECCCcceEEEEEEEEEec
Confidence            9999998888888888654

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.72  E-value=0.0001  Score=64.41  Aligned_cols=84  Identities=23%  Similarity=0.440  Sum_probs=52.1

Q ss_pred             ccccccccccccceeeeEeecCC----CCeeEEEEc----Cee--cc---CCcc---cCcc-ceEEEeeCCceeeeeeEE
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIP----PAAISWYWN----GRL--LL---NNTA---FSSY-QRIFVIEQGEYERKSSLV  322 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P----~p~i~W~~~----g~~--l~---~~~~---~~~~-~~~~~~~~g~~~~~s~L~  322 (600)
                      .+..+++..|++++|.|.....+    ...|.|++.    +..  +.   ....   ...+ .|+.+..+ ......+|.
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~-~~~~~~sL~   82 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGN-IMRRDASIL   82 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecC-CcCCceEEE
Confidence            35678889999999999886433    236999862    111  10   0000   0000 12221111 112356799


Q ss_pred             EecCCCCCCeEEEEEEecCCCc
Q psy1672         323 LTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       323 I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      |.+++.+|+|.|+|.+.|..+.
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          83 IWQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             EeeCChhhCEEEEEEEEeCCCC
Confidence            9999999999999999998764

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>KOG4658|consensus

Probab=97.71  E-value=3e-05  Score=90.15  Aligned_cols=140  Identities=21%  Similarity=0.260  Sum_probs=105.6

Q ss_pred             cCCCCCccCCCCCCCCceEEEeeCCC--CCCCChhhhcccCCCCccEEEeecc-cCcccCccccCCCCCccEEEccCCCC
Q psy1672          35 RDKFLITIPEAPESELTQVLDMSGNN--LQILPKEAFRRAGLLNLQKLFLARC-HIGQIDSGALDGLTNLIEIDLSDNLL  111 (600)
Q Consensus        35 ~~~~L~~ip~~~~~~~l~~L~Ls~n~--L~~l~~~~f~~~~l~~L~~L~L~~n-~l~~i~~~~f~~l~~L~~L~Ls~N~l  111 (600)
                      .+.....++.......+++|-+..|.  +..++...|.  .++.|+.|+|++| .+..+ |..++.|.+|++|+|++..+
T Consensus       531 ~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~--~m~~LrVLDLs~~~~l~~L-P~~I~~Li~LryL~L~~t~I  607 (889)
T KOG4658|consen  531 MNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFR--SLPLLRVLDLSGNSSLSKL-PSSIGELVHLRYLDLSDTGI  607 (889)
T ss_pred             eccchhhccCCCCCCccceEEEeecchhhhhcCHHHHh--hCcceEEEECCCCCccCcC-ChHHhhhhhhhcccccCCCc
Confidence            34555566655554459999999997  8889988887  8999999999987 55666 55689999999999999999


Q ss_pred             CCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCc--CcccChhhhcCCCCCCEEEc
Q psy1672         112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR--LEHISPEAFTGAKSLESIKL  178 (600)
Q Consensus       112 ~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~--l~~i~~~~~~~l~~L~~L~L  178 (600)
                      ..+|. .+.++..|.+|++..+......+.....+.+|+.|.+....  .....-..+.++.+|+.|..
T Consensus       608 ~~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  608 SHLPS-GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             cccch-HHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            99998 68899999999999887555556777779999999886543  22222233344555555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.67  E-value=3.9e-05  Score=54.44  Aligned_cols=37  Identities=32%  Similarity=0.496  Sum_probs=14.7

Q ss_pred             CccEEEeecccCcccCccccCCCCCccEEEccCCCCCC
Q psy1672          76 NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTS  113 (600)
Q Consensus        76 ~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~  113 (600)
                      +|++|+|++|+|+.+++ .|.+|++|++|++++|.|++
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence            34444444444444432 23444444444444444443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.66  E-value=3.6e-05  Score=54.57  Aligned_cols=39  Identities=46%  Similarity=0.718  Sum_probs=25.3

Q ss_pred             CCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCcc
Q psy1672          99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI  138 (600)
Q Consensus        99 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l  138 (600)
                      ++|++|+|++|+|+.+++ .+..+++|+.|++++|+|+.+
T Consensus         1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence            356777777777777665 466777777777777776654

...

>KOG4221|consensus

Probab=97.66  E-value=3.1e-05  Score=88.48  Aligned_cols=91  Identities=29%  Similarity=0.456  Sum_probs=73.6

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+.++.++.+.|.+.|.|.|.+.|+++|..+....      .+++..++      .|.|.-+-..|.|.
T Consensus       328 ~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsd------y~ki~~~~------~lrIlgi~~sdeg~  395 (1381)
T KOG4221|consen  328 PPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSD------YFKIVGGG------NLRILGIVKSDEGF  395 (1381)
T ss_pred             CCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCccc------ceEecCCC------CcEEEEEecccchh
Confidence            4666666778888899999999999999999999999998766532      23333333      47888888899999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEc
Q psy1672         334 FYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      |+|+++|.+|.+.+.+.+.+...
T Consensus       396 yQcvaen~~G~a~a~a~l~vv~~  418 (1381)
T KOG4221|consen  396 YQCVAENDAGSAQAAAQLEVVPQ  418 (1381)
T ss_pred             hhhhhccCcccccchhhheeccC
Confidence            99999999999999998877554

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.65  E-value=0.00016  Score=60.40  Aligned_cols=75  Identities=19%  Similarity=0.385  Sum_probs=55.9

Q ss_pred             cccccceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         267 VSSENATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      ..|+.++|.|.+.|. |. .+|+|+++|..+.....   ........++.+...+.|.+......+.+.|+|.|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~---~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT---TTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee---ccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            468899999999987 53 58999999988764431   12233345566677778888777777899999999998654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.65  E-value=0.00056  Score=55.45  Aligned_cols=77  Identities=22%  Similarity=0.379  Sum_probs=50.2

Q ss_pred             ceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe-EEEEEEecCCCc-eeEE
Q psy1672         272 ATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG-RFYCVAENRAGI-ADAN  348 (600)
Q Consensus       272 v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G-~Y~C~a~N~~G~-~~~~  348 (600)
                      +.|.|.+. +.|.++|.|+++++.+.....      ......+.+...+.|.+. ++.+|.| .|+|.|.|+.-. .+..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~------~~~~~~~~~t~~S~L~~~-p~~eDdG~~~~C~a~~~~l~~~~~~   74 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKST------VEETWSRMFTVTSQLMLK-VTKEDDGVPVICLVDHPAVKDLQTQ   74 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCccc------ceeccCCCcEEEEEEEEE-CchhhCCCEEEEEEcCcccCCceee
Confidence            57899998 578899999999988865321      011122234455677774 4555555 899999997632 3555


Q ss_pred             EEEEEEE
Q psy1672         349 FTLQVTY  355 (600)
Q Consensus       349 v~L~V~~  355 (600)
                      +.|.|.+
T Consensus        75 ~~L~V~y   81 (82)
T cd05883          75 RYLEVQY   81 (82)
T ss_pred             EEEEEEE
Confidence            6666643

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>KOG1909|consensus

Probab=97.64  E-value=9.5e-06  Score=81.61  Aligned_cols=160  Identities=21%  Similarity=0.217  Sum_probs=118.8

Q ss_pred             CCceEEEeeCCCCCCCChhh-----hc------ccCCCCccEEEeecccCcccC----ccccCCCCCccEEEccCCCCCC
Q psy1672          49 ELTQVLDMSGNNLQILPKEA-----FR------RAGLLNLQKLFLARCHIGQID----SGALDGLTNLIEIDLSDNLLTS  113 (600)
Q Consensus        49 ~~l~~L~Ls~n~L~~l~~~~-----f~------~~~l~~L~~L~L~~n~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~  113 (600)
                      ..|++|.|.+|.+...--..     |.      .+.-++|+.+...+|++..-.    ..+|...+.|+.+.++.|.|..
T Consensus       120 ~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~  199 (382)
T KOG1909|consen  120 TDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP  199 (382)
T ss_pred             cCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccC
Confidence            34999999999987322211     11      135679999999999986543    3457777899999999998863


Q ss_pred             C----CccccCCCCCCCEEEccCCCCCccC----cccccCCCCcceeeCCCCcCcccChhhh-----cCCCCCCEEEcCC
Q psy1672         114 I----PSLTFQSVRFLRDLNLARNPISKIE----KGAFQFVPGLVKLDMSESRLEHISPEAF-----TGAKSLESIKLNG  180 (600)
Q Consensus       114 l----~~~~f~~l~~L~~L~Ls~N~i~~l~----~~~~~~l~~L~~L~Ls~n~l~~i~~~~~-----~~l~~L~~L~Ls~  180 (600)
                      -    -...|..+++|+.|+|.+|.++.-.    ..++..+++|+.|++++|.+..-...+|     ...++|+.|.|.+
T Consensus       200 eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~g  279 (382)
T KOG1909|consen  200 EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAG  279 (382)
T ss_pred             chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCc
Confidence            2    2235778999999999999887532    2456678899999999999987654443     2478999999999


Q ss_pred             CcCCCCC----cccccccccccEEEccCCcCc
Q psy1672         181 NRLSHFP----VRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       181 N~l~~l~----~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      |.|+.-.    .......+.|..|+|.+|.+-
T Consensus       280 NeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  280 NEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             chhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            9998532    123344678999999999983

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.63  E-value=0.00014  Score=62.90  Aligned_cols=81  Identities=21%  Similarity=0.327  Sum_probs=53.4

Q ss_pred             ccccccccccccceeeeEeecCCCCeeEEEEcC--eeccCC------c--c--cCccceEEEeeCCceeeeeeEEEecCC
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNG--RLLLNN------T--A--FSSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g--~~l~~~------~--~--~~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      .+..+.+.+|++++|.|.+.+ +.+.+.|++..  +.+..-      .  .  .....+.......  .....|.|.+++
T Consensus         4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~L~I~~~~   80 (110)
T cd05899           4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPS--LTRSSLTIKSAE   80 (110)
T ss_pred             CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcC--CCccEEEECCCC
Confidence            456788899999999999987 67889999942  211100      0  0  0001222222211  134589999999


Q ss_pred             CCCCeEEEEEEecCCC
Q psy1672         328 ESDSGRFYCVAENRAG  343 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~~G  343 (600)
                      .+|+|.|.|.+.+..+
T Consensus        81 ~~Dsg~Y~Ca~~~~~~   96 (110)
T cd05899          81 PEDSAVYLCASSLGGG   96 (110)
T ss_pred             hhhCEEEEEEeeCCCC
Confidence            9999999999987643

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.62  E-value=0.00056  Score=59.38  Aligned_cols=86  Identities=21%  Similarity=0.295  Sum_probs=56.0

Q ss_pred             cccceeeeEeecCC-----------CCeeEEEEcC-----eeccCCcc----------c-CccceEEEeeCCceeeeeeE
Q psy1672         269 SENATVVCRVDSIP-----------PAAISWYWNG-----RLLLNNTA----------F-SSYQRIFVIEQGEYERKSSL  321 (600)
Q Consensus       269 G~~v~L~C~v~g~P-----------~p~i~W~~~g-----~~l~~~~~----------~-~~~~~~~~~~~g~~~~~s~L  321 (600)
                      |++++|.|.....|           ...|.|++-.     +.......          . .-.+|+.+..+.......+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            67899999988443           2379998731     11000000          0 00123333322212235789


Q ss_pred             EEecCCCCCCeEEEEEEecCCCceeEEEEEEEE
Q psy1672         322 VLTNAQESDSGRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       322 ~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      .|.+++.+|+|.|.|.+.+.....+..+.|.|.
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            999999999999999999999888888888884

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.61  E-value=0.00041  Score=60.63  Aligned_cols=83  Identities=20%  Similarity=0.404  Sum_probs=52.1

Q ss_pred             cccccccccccceeeeEeecCC----CCeeEEEEcCe------ecc---CCcc----cCcc-ceEEEeeCCceeeeeeEE
Q psy1672         261 SRYVEAVSSENATVVCRVDSIP----PAAISWYWNGR------LLL---NNTA----FSSY-QRIFVIEQGEYERKSSLV  322 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P----~p~i~W~~~g~------~l~---~~~~----~~~~-~~~~~~~~g~~~~~s~L~  322 (600)
                      +..+.+..|+.++|.|......    ...|.|++...      .+.   ....    .+.+ .|+.+..+ ......+|+
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~   83 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGN-PSRKDASIV   83 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecC-CcCCeeEEE
Confidence            5667888999999999886432    24699987221      110   0000    0011 22222211 112346899


Q ss_pred             EecCCCCCCeEEEEEEecCCCc
Q psy1672         323 LTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       323 I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      |.+++.+|+|.|.|.+.|..+.
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCCC
Confidence            9999999999999999998764

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.61  E-value=0.00022  Score=60.24  Aligned_cols=82  Identities=21%  Similarity=0.414  Sum_probs=54.2

Q ss_pred             cccccceeeeEeec-CCCCeeEEEEcCeeccCCcc---------c-Ccc-ceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         267 VSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTA---------F-SSY-QRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       267 ~~G~~v~L~C~v~g-~P~p~i~W~~~g~~l~~~~~---------~-~~~-~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      ..|++|+|.|.... .....+.|++....+.....         + +.+ .|+.+..     ...+|+|.+++.+|+|.|
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~-----~~~sL~I~~~~~~DsG~Y   76 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQ-----NDYSLQISNLKMEDAGSY   76 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecC-----CceeEEECCCchHHCEEE
Confidence            36999999998764 45568999986432211100         0 000 1222211     236899999999999999


Q ss_pred             EEEEecCCCce-eEEEEEEE
Q psy1672         335 YCVAENRAGIA-DANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~-~~~v~L~V  353 (600)
                      .|.+.+..|.. .+.+.|+|
T Consensus        77 ~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          77 RAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             EEEEEcCCCCeEEEEEEEEe
Confidence            99999988765 66677765

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.60  E-value=0.00033  Score=59.24  Aligned_cols=81  Identities=16%  Similarity=0.340  Sum_probs=51.5

Q ss_pred             cceeeeEeecC-CC---CeeEEEEcC--e--ec--cCC----cccC-ccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         271 NATVVCRVDSI-PP---AAISWYWNG--R--LL--LNN----TAFS-SYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       271 ~v~L~C~v~g~-P~---p~i~W~~~g--~--~l--~~~----~~~~-~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      .++|.|..... |.   ..|.|.+..  .  .+  ...    ...+ ...|+.+...  ...+++|.|.+++.+|+|.|+
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~--~~~daSi~i~nl~~~D~G~Y~   79 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNP--SFEDGTISLSRLELEDEGVYI   79 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCC--CCCcceEEEcCCccccCEEEE
Confidence            57899988742 22   268998831  1  11  000    0000 1123333211  124679999999999999999


Q ss_pred             EEEec-CCCceeEEEEEEE
Q psy1672         336 CVAEN-RAGIADANFTLQV  353 (600)
Q Consensus       336 C~a~N-~~G~~~~~v~L~V  353 (600)
                      |.+.| +.|..++.+.|.|
T Consensus        80 C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          80 CEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEEEeCCCCCeEEEEEEEE
Confidence            99999 6788888888876

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.59  E-value=0.00039  Score=60.01  Aligned_cols=87  Identities=21%  Similarity=0.206  Sum_probs=56.1

Q ss_pred             ccccceeeeEeecCC-------CCeeEEEEc--Ceecc-------CC-c--cc-CccceEEEeeCCceeeeeeEEEecCC
Q psy1672         268 SSENATVVCRVDSIP-------PAAISWYWN--GRLLL-------NN-T--AF-SSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P-------~p~i~W~~~--g~~l~-------~~-~--~~-~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      .|+.++|.|...-.|       .+.|.|.+.  +....       .. .  .. .-.+|+.+..+.......+|.|.+++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            378899999866322       368999983  11000       00 0  00 11234444433222346799999999


Q ss_pred             CCCCeEEEEEEecCCCceeEEEEEEEE
Q psy1672         328 ESDSGRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      .+|+|.|.|.+.......+..+.|.|.
T Consensus        81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          81 YSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            999999999999977667788888774

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.58  E-value=0.00027  Score=60.64  Aligned_cols=81  Identities=17%  Similarity=0.351  Sum_probs=52.2

Q ss_pred             ccccccccccccccceeeeEeecCC-CCeeEEEEc--Cee---cc-CC--cccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWN--GRL---LL-NN--TAFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P-~p~i~W~~~--g~~---l~-~~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ...+..+.+.+|+.++|.|.+.+.. ...+.|++.  |+.   +. ..  .......+.....+   .....|.|.+++.
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~---~~~~~L~I~~~~~   80 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGS---GTDFTLTISRVEP   80 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEecc---CCEEEEEECCCCh
Confidence            3446678889999999999997655 567999983  221   11 00  00001112222111   1345799999999


Q ss_pred             CCCeEEEEEEecC
Q psy1672         329 SDSGRFYCVAENR  341 (600)
Q Consensus       329 ~d~G~Y~C~a~N~  341 (600)
                      +|+|.|.|.+.+.
T Consensus        81 ~Dsg~Y~Ca~~~~   93 (106)
T cd04980          81 EDAAVYYCQQYGT   93 (106)
T ss_pred             HHCEEEEEEEeCC
Confidence            9999999998764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.52  E-value=0.00067  Score=55.25  Aligned_cols=69  Identities=19%  Similarity=0.286  Sum_probs=46.8

Q ss_pred             ceeeeEeec-CCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCce
Q psy1672         272 ATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA  345 (600)
Q Consensus       272 v~L~C~v~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~  345 (600)
                      +.|.|.+.+ .|.++|.|+++++.+....     .......++.+...+.|.+......+.+.|+|.|.|.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-----~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-----LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-----eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            579999985 5889999999998875321     11111233445556677775555555569999999987653

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>KOG4222|consensus

Probab=97.48  E-value=0.00017  Score=82.13  Aligned_cols=92  Identities=29%  Similarity=0.450  Sum_probs=71.4

Q ss_pred             ccccccccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         258 RMDSRYVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      ...++.+.+..|+.+.|.|.-. |.|.|.+.|.++|+.+....    ..++.+...|      .|.|.++..+|.|.|.|
T Consensus       135 rv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~----~~~~~lisgG------~LlIsnvrksD~GtY~C  204 (1281)
T KOG4222|consen  135 RVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYD----VPIIALISGG------NLLISNVRKSDEGTYAC  204 (1281)
T ss_pred             ccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccccc----ceeEEEecCC------cEEEeccccCCCceeee
Confidence            4445667788899999999765 89999999999999887221    2233344444      79999999999999999


Q ss_pred             EEecCCCcee-EEEEEEEEEccCC
Q psy1672         337 VAENRAGIAD-ANFTLQVTYRGVG  359 (600)
Q Consensus       337 ~a~N~~G~~~-~~v~L~V~~~~~~  359 (600)
                      +|.|.+|..+ ....|.|.+++..
T Consensus       205 VatNmvG~ReS~~A~lsv~e~P~f  228 (1281)
T KOG4222|consen  205 VATNMVGERESIPARLSVQEKPWF  228 (1281)
T ss_pred             eecccccccccccceeeeccCCcc
Confidence            9999999864 4467777766543

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=97.47  E-value=3.7e-05  Score=56.48  Aligned_cols=48  Identities=31%  Similarity=0.828  Sum_probs=37.9

Q ss_pred             CcCccccccccchhhhcccCCCC--CCCCCCCCccccccccccccccccCc
Q psy1672         205 NPWVCDCNMRSIKMWLADKKNVP--VQPACTGPERLSGKVFSDLHADDFAC  253 (600)
Q Consensus       205 N~~~C~C~l~~l~~w~~~~~~~~--~~~~C~~p~~l~g~~l~~l~~~~~~C  253 (600)
                      |||.|||++.||..|+.+...+.  ..+.|..|..+. ..+.++..+++.|
T Consensus         1 NP~~CdC~l~~~~~w~~~~~~~~~~~~~~C~~P~~~~-~~l~~~~~~~~~C   50 (51)
T smart00082        1 NPFICDCELRWLLRWLQANEHLQDPVSLRCASPSSLR-GPLLELLHSEFKC   50 (51)
T ss_pred             CCccCcCCchHHHHHHHhCCccCCCCCCEeCCcHHHH-hHHHcCCHhhCCC
Confidence            89999999999999998633322  468999999988 5577777767776

>KOG2982|consensus

Probab=97.42  E-value=7.9e-05  Score=73.54  Aligned_cols=109  Identities=21%  Similarity=0.229  Sum_probs=60.0

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCc--cccCCCCCccEEEccCCCCCCCCccccCCCCCCCEE
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS--GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDL  128 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~--~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L  128 (600)
                      ++.|-+.++.|..+.....-......++.|+|.+|.|+....  ..+.+|+.|+.|+|+.|.+.......-..+.+|+.|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            445666666665443322111245667777777777654422  224567777777777777664332111245567777


Q ss_pred             EccCCCCCccCc-ccccCCCCcceeeCCCCcC
Q psy1672         129 NLARNPISKIEK-GAFQFVPGLVKLDMSESRL  159 (600)
Q Consensus       129 ~Ls~N~i~~l~~-~~~~~l~~L~~L~Ls~n~l  159 (600)
                      .|.+..+.+... ..+..++.+++|+++.|.+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            776666544332 2344566666666666633

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.40  E-value=0.00039  Score=59.20  Aligned_cols=78  Identities=21%  Similarity=0.313  Sum_probs=51.4

Q ss_pred             cccccccceeeeEeecC-CCCeeEEEEcCe--e---ccC--Cc----ccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         265 EAVSSENATVVCRVDSI-PPAAISWYWNGR--L---LLN--NT----AFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~-P~p~i~W~~~g~--~---l~~--~~----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      .+..|+.++|.|.+.+. +...+.|++...  .   +..  ..    ......+..+..+. ......|+|.+++.+|+|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~sL~I~~v~~~D~G   80 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDS-SKSSFTLTISSLQPEDSA   80 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEec-cCCEEEEEECCCCHHHCE
Confidence            56789999999999876 667899998332  1   100  00    00111233332222 113468999999999999


Q ss_pred             EEEEEEecCCC
Q psy1672         333 RFYCVAENRAG  343 (600)
Q Consensus       333 ~Y~C~a~N~~G  343 (600)
                      .|.|.+.+..+
T Consensus        81 ~Y~C~v~~~~~   91 (105)
T cd00099          81 VYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEecCCC
Confidence            99999998765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.40  E-value=0.00074  Score=56.96  Aligned_cols=74  Identities=22%  Similarity=0.365  Sum_probs=47.7

Q ss_pred             cccccccceeeeEeecC--CCCeeEEEEc--CeeccC----C--cccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         265 EAVSSENATVVCRVDSI--PPAAISWYWN--GRLLLN----N--TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~--P~p~i~W~~~--g~~l~~----~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      .+..|++++|.|.+.+.  ....+.|++.  ++....    .  .......+.....++   ....|+|.+++.+|+|.|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~---~~~~L~I~~~~~~Dsg~Y   78 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG---NTASLTISGAQTEDEADY   78 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC---CEEEEEECCCChhhCEEE
Confidence            57789999999998765  4567999983  221110    0  000011233322222   345799999999999999


Q ss_pred             EEEEecC
Q psy1672         335 YCVAENR  341 (600)
Q Consensus       335 ~C~a~N~  341 (600)
                      .|.+.+.
T Consensus        79 ~C~~~~~   85 (98)
T cd04984          79 YCQVWDS   85 (98)
T ss_pred             EEEEccC
Confidence            9998753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>KOG3665|consensus

Probab=97.38  E-value=9.7e-05  Score=83.77  Aligned_cols=132  Identities=20%  Similarity=0.200  Sum_probs=95.3

Q ss_pred             CceEEEeeCCCCC--CCChhhhcccCCCCccEEEeecccCcccC-ccccCCCCCccEEEccCCCCCCCCccccCCCCCCC
Q psy1672          50 LTQVLDMSGNNLQ--ILPKEAFRRAGLLNLQKLFLARCHIGQID-SGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLR  126 (600)
Q Consensus        50 ~l~~L~Ls~n~L~--~l~~~~f~~~~l~~L~~L~L~~n~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~  126 (600)
                      +|+.|++++...-  ..+.....  -+++|+.|.+.+-.+..-+ ...+..+++|..||+|+.+++.+.  .++.|++|+
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~--~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~--GIS~LknLq  198 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGT--MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS--GISRLKNLQ  198 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhh--hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH--HHhccccHH
Confidence            4889999987743  55656655  7999999999887653321 233568899999999999999883  478899999


Q ss_pred             EEEccCCCCCcc-CcccccCCCCcceeeCCCCcCcccC------hhhhcCCCCCCEEEcCCCcCCC
Q psy1672         127 DLNLARNPISKI-EKGAFQFVPGLVKLDMSESRLEHIS------PEAFTGAKSLESIKLNGNRLSH  185 (600)
Q Consensus       127 ~L~Ls~N~i~~l-~~~~~~~l~~L~~L~Ls~n~l~~i~------~~~~~~l~~L~~L~Ls~N~l~~  185 (600)
                      .|.+.+=.+..- .-..+.+|++|+.||+|........      -+....+++|+.||.+++.+..
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            998877665542 1134567999999999876544332      1223458999999999876653

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.37  E-value=0.0015  Score=53.31  Aligned_cols=69  Identities=17%  Similarity=0.277  Sum_probs=47.8

Q ss_pred             ceeeeEeec-CCCCeeEEEEcCeeccCCcccCccceEEEeeC-CceeeeeeEEEecCCCCCCeEEEEEEecCCCce
Q psy1672         272 ATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ-GEYERKSSLVLTNAQESDSGRFYCVAENRAGIA  345 (600)
Q Consensus       272 v~L~C~v~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~-g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~  345 (600)
                      +.|.|.+.+ .|.+.|.|+++|+.+....     ..+....+ +.+...+.|.+......+...|+|.|.+.....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~-----~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAP-----TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcc-----eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            579999995 5889999999998875432     12222223 345556777776555666679999999987544

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.37  E-value=0.00041  Score=59.60  Aligned_cols=93  Identities=24%  Similarity=0.367  Sum_probs=56.7

Q ss_pred             ccccccccccccceeeeEee-cCCCCeeEEEEcCe-----ecc--CCc------ccCccceEEEeeCCceeeeeeEEEec
Q psy1672         260 DSRYVEAVSSENATVVCRVD-SIPPAAISWYWNGR-----LLL--NNT------AFSSYQRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~-----~l~--~~~------~~~~~~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      .+..+.+..|+.+.|.|... ......+.|++...     .+.  ...      ......+..+..+.. .....|.|.+
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~sL~i~~   85 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGS-QNNFSLTIKN   85 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETT-TTEEEEEESS
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeeccc-CCeEEEEECC
Confidence            36678899999999999998 45566899999322     111  000      000011122222111 1245799999


Q ss_pred             CCCCCCeEEEEEEecCC-CceeEEEEEEE
Q psy1672         326 AQESDSGRFYCVAENRA-GIADANFTLQV  353 (600)
Q Consensus       326 v~~~d~G~Y~C~a~N~~-G~~~~~v~L~V  353 (600)
                      ++.+|+|.|.|.+.... ......+.|+|
T Consensus        86 l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   86 LQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             ESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             CCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            99999999999999872 22334444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.33  E-value=0.0011  Score=55.70  Aligned_cols=82  Identities=22%  Similarity=0.295  Sum_probs=52.1

Q ss_pred             ccceeeeEeecC-CCCeeEEEEcC----eecc-CCccc-----Cc-cceEEEeeCCceeeeeeEEEecCCCCCCeEEEEE
Q psy1672         270 ENATVVCRVDSI-PPAAISWYWNG----RLLL-NNTAF-----SS-YQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCV  337 (600)
Q Consensus       270 ~~v~L~C~v~g~-P~p~i~W~~~g----~~l~-~~~~~-----~~-~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~  337 (600)
                      ++++|.|..... ....|+|.+..    ..+. ....+     +. ..|+.+...  ...+++|.|.+++.+|+|.|+|.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~--~~~d~sl~i~nv~~~D~G~Y~C~   78 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNY--SLLDATIMLENVGFSDIGVYICK   78 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCC--CCCccEEEEeCCCccccEEEEEE
Confidence            368899988732 33589998832    1111 00000     01 123433321  23467999999999999999999


Q ss_pred             Eec-CCCceeEEEEEEE
Q psy1672         338 AEN-RAGIADANFTLQV  353 (600)
Q Consensus       338 a~N-~~G~~~~~v~L~V  353 (600)
                      +.+ +.|+.++++.|.|
T Consensus        79 v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          79 AVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EEeCCCCCeeEEEEEEE
Confidence            764 6688888888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.32  E-value=0.00093  Score=55.16  Aligned_cols=73  Identities=25%  Similarity=0.464  Sum_probs=47.2

Q ss_pred             cccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCce
Q psy1672         269 SENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA  345 (600)
Q Consensus       269 G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~  345 (600)
                      |+.+.+.|.+. +.|.|.|.|+.++..+....    ........++.+...+.|.+......+...++|.|.+..-..
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~----~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASN----TTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEE----EEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeee----eeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence            77999999777 78999999999887661110    011112223334455678776555455568999999986443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.30  E-value=0.0011  Score=54.05  Aligned_cols=69  Identities=16%  Similarity=0.324  Sum_probs=46.9

Q ss_pred             ceeeeEeec-CCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         272 ATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       272 v~L~C~v~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      ++|.|.+.| .|...|.|+++|+.+....    ........++++...+.|.+......+...|+|.|.+..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~----~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVK----YLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCce----eeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            579999985 6778999999999875432    11122223455566778888644444445899999998644

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.29  E-value=0.0017  Score=54.65  Aligned_cols=83  Identities=17%  Similarity=0.268  Sum_probs=50.9

Q ss_pred             cccceeeeEeecCCC-CeeEEEEcCe----ecc-----CCcc-cCc-cceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         269 SENATVVCRVDSIPP-AAISWYWNGR----LLL-----NNTA-FSS-YQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       269 G~~v~L~C~v~g~P~-p~i~W~~~g~----~l~-----~~~~-~~~-~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      |++++|.|....... -.|.|++...    .+.     .... ... ..+..+...  ....++|.|.+++.+|+|.|+|
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~sL~I~nv~~~D~G~Y~C   78 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSL--GLNSTSITIWNVTLEDEGCYKC   78 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCC--CCCccEEEEeCCceeeeEEEEE
Confidence            688999998764332 3699998321    100     0000 001 112222211  1245789999999999999999


Q ss_pred             EEec-CCCceeEEEEEEE
Q psy1672         337 VAEN-RAGIADANFTLQV  353 (600)
Q Consensus       337 ~a~N-~~G~~~~~v~L~V  353 (600)
                      .... +.|..+..+.|.|
T Consensus        79 ~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          79 IFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EEEeCCCCCeeeEEEEEE
Confidence            9875 5567777777766

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.27  E-value=0.00073  Score=58.89  Aligned_cols=81  Identities=20%  Similarity=0.388  Sum_probs=52.8

Q ss_pred             ccccccccccccceeeeEeec--CCCCeeEEEEc--Ceecc------CCcc-----cCccceEEEeeCCceeeeeeEEEe
Q psy1672         260 DSRYVEAVSSENATVVCRVDS--IPPAAISWYWN--GRLLL------NNTA-----FSSYQRIFVIEQGEYERKSSLVLT  324 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g--~P~p~i~W~~~--g~~l~------~~~~-----~~~~~~~~~~~~g~~~~~s~L~I~  324 (600)
                      .+..+.+..|+.++|.|.+.+  .+.+.+.|++.  +....      ....     .....++.+..+.. .....|+|.
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~L~I~   82 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVG-KSTSTLTIQ   82 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECC-CCEEEEEEE
Confidence            456778899999999999987  67788999993  22110      0000     00112333322210 134579999


Q ss_pred             cCCCCCCeEEEEEEecC
Q psy1672         325 NAQESDSGRFYCVAENR  341 (600)
Q Consensus       325 ~v~~~d~G~Y~C~a~N~  341 (600)
                      +++.+|+|.|.|.+...
T Consensus        83 ~~~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          83 NLEKEDSATYYCAYWES   99 (116)
T ss_pred             ECCHHHCEEEEEEEecC
Confidence            99999999999998753

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.13  E-value=0.0019  Score=58.35  Aligned_cols=90  Identities=17%  Similarity=0.288  Sum_probs=55.3

Q ss_pred             ccccccccccccccccccceeeeEeecC-CC-CeeEEEEcCeeccCC---cccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSI-PP-AAISWYWNGRLLLNN---TAFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~---~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      .|.+...+.......|+.++|.|.+.|. |. .+|.|+++|......   .............++++...+.|.+.....
T Consensus        38 ~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~  117 (139)
T cd05771          38 PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTE  117 (139)
T ss_pred             CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCcc
Confidence            4544444444444468889999999986 44 489999987542210   000001122344567777778888875555


Q ss_pred             CCCeEEEEEEecCCC
Q psy1672         329 SDSGRFYCVAENRAG  343 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G  343 (600)
                      .+.+.|+|.+.+..-
T Consensus       118 ~~g~~ytC~V~H~~l  132 (139)
T cd05771         118 DAGATYTCRVSHVSL  132 (139)
T ss_pred             CCCCEEEEEEEcCCC
Confidence            455589999987643

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>KOG2982|consensus

Probab=97.10  E-value=0.0004  Score=68.72  Aligned_cols=83  Identities=18%  Similarity=0.138  Sum_probs=33.4

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCC-CccccCCCCCCCEEE
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSI-PSLTFQSVRFLRDLN  129 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~  129 (600)
                      ++.|||.+|.|+.+..-......|+.|+.|+|+.|.+..-....-..+.+|+.|-|.+..+..- ....+..++.++.|.
T Consensus        73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH  152 (418)
T KOG2982|consen   73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH  152 (418)
T ss_pred             hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence            4445555555544332211112455555555555544322111002334555555544433211 111223344445555


Q ss_pred             ccCC
Q psy1672         130 LARN  133 (600)
Q Consensus       130 Ls~N  133 (600)
                      ++.|
T Consensus       153 mS~N  156 (418)
T KOG2982|consen  153 MSDN  156 (418)
T ss_pred             hccc
Confidence            5544

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.08  E-value=0.0022  Score=53.70  Aligned_cols=68  Identities=21%  Similarity=0.215  Sum_probs=46.7

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      ....+..|++|+|.|.... ....+.|+++|......         ...........+.+.|..++..|+|.|.|...
T Consensus         8 p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~---------~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           8 PSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVL---------HLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCce---------ecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            4556779999999998864 55679999977542210         00000011234578999999999999999975

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd00096 Ig Immunoglobulin domain

Probab=97.08  E-value=0.0043  Score=46.90  Aligned_cols=67  Identities=33%  Similarity=0.571  Sum_probs=46.5

Q ss_pred             ceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         272 ATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       272 v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      +.|.|.+.+.+...+.|++++.........     ..............|.|.++...|.|.|.|.+.+..+
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~   67 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT-----RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG   67 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccE-----EeccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence            468999988777899999977654432210     0111122233456799999999999999999998763

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.03  E-value=0.0036  Score=52.54  Aligned_cols=79  Identities=16%  Similarity=0.268  Sum_probs=47.8

Q ss_pred             cceeeeEeec-CCCCeeEEEEcCe----eccC-----Cccc-Cc-cceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         271 NATVVCRVDS-IPPAAISWYWNGR----LLLN-----NTAF-SS-YQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       271 ~v~L~C~v~g-~P~p~i~W~~~g~----~l~~-----~~~~-~~-~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      .++|.|.... .....++|.+...    .+.-     ...+ +. ..|+.+....  ..+++|.|.+++.+|+|.|+|..
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~--~~d~sI~i~nvt~~D~G~Y~C~~   79 (96)
T cd05889           2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST--REDMSLSFNNATEEDVGLYCCSL   79 (96)
T ss_pred             CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC--CCccEEEEcCCCcccCEEEEEEE
Confidence            5789998763 2356788998321    1100     0000 01 1233333221  24578999999999999999999


Q ss_pred             ecC-CCceeEEEEE
Q psy1672         339 ENR-AGIADANFTL  351 (600)
Q Consensus       339 ~N~-~G~~~~~v~L  351 (600)
                      ... .|..++.+.+
T Consensus        80 ~t~P~g~~~~~i~~   93 (96)
T cd05889          80 VTYPQGSWEKVIEV   93 (96)
T ss_pred             EeCCCCCeEEEEEE
Confidence            875 5766666554

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=96.99  E-value=0.0049  Score=49.17  Aligned_cols=68  Identities=22%  Similarity=0.449  Sum_probs=46.4

Q ss_pred             ceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         272 ATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       272 v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ++|.|.+.|. |. ..+.|+++|+.+.....   ........+|.+...+.|.+......+...|+|.+....
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~---~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVS---TTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEE---ECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6799999975 44 48999999986543321   111222346677778888887666556668999998764

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.99  E-value=0.0047  Score=65.25  Aligned_cols=131  Identities=18%  Similarity=0.322  Sum_probs=62.5

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecc-cCcccCccccCCCCCccEEEccCC-CCCCCCccccCCCCCCCEE
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIGQIDSGALDGLTNLIEIDLSDN-LLTSIPSLTFQSVRFLRDL  128 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n-~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L  128 (600)
                      ++.|++++|.|+.+|.  +    ..+|+.|.+++| .++.++ +.+  ..+|++|+|++| .+..+|.       .|+.|
T Consensus        54 l~~L~Is~c~L~sLP~--L----P~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~sLP~-------sLe~L  117 (426)
T PRK15386         54 SGRLYIKDCDIESLPV--L----PNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISGLPE-------SVRSL  117 (426)
T ss_pred             CCEEEeCCCCCcccCC--C----CCCCcEEEccCCCCcccCC-chh--hhhhhheEccCccccccccc-------ccceE
Confidence            6667777777776661  1    345777777664 444433 222  246677777766 5554443       35566


Q ss_pred             EccCCCCCccCcccccCCCCcceeeCCCCc-CcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCC
Q psy1672         129 NLARNPISKIEKGAFQFVPGLVKLDMSESR-LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN  205 (600)
Q Consensus       129 ~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N  205 (600)
                      ++..+.+..+..    -.++|+.|.+.+++ ........ .-..+|+.|++++|....++.. +.  .+|+.|.+..+
T Consensus       118 ~L~~n~~~~L~~----LPssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~LP~~-LP--~SLk~L~ls~n  187 (426)
T PRK15386        118 EIKGSATDSIKN----VPNGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNIILPEK-LP--ESLQSITLHIE  187 (426)
T ss_pred             EeCCCCCccccc----CcchHhheecccccccccccccc-ccCCcccEEEecCCCcccCccc-cc--ccCcEEEeccc
Confidence            665554332210    11245555553322 10000000 0124566666666655443321 11  35555665544

>KOG2123|consensus

Probab=96.98  E-value=3.4e-05  Score=75.42  Aligned_cols=100  Identities=22%  Similarity=0.287  Sum_probs=55.8

Q ss_pred             CCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCc-ccccCCCCccee
Q psy1672          74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEK-GAFQFVPGLVKL  152 (600)
Q Consensus        74 l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~-~~~~~l~~L~~L  152 (600)
                      +.+.++|++.+|+|..|.-  ...|+.|+.|.||-|.|+++.+  |..+.+|++|+|..|.|..+.. .-+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            4455666666666666543  3456666666666666666654  5556666666666666655533 224456666666


Q ss_pred             eCCCCcCcccC-----hhhhcCCCCCCEEE
Q psy1672         153 DMSESRLEHIS-----PEAFTGAKSLESIK  177 (600)
Q Consensus       153 ~Ls~n~l~~i~-----~~~~~~l~~L~~L~  177 (600)
                      .|..|....-.     ...+.-+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            66655433222     12344456666554

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=96.96  E-value=0.0034  Score=58.36  Aligned_cols=89  Identities=17%  Similarity=0.320  Sum_probs=60.0

Q ss_pred             ccccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccc---------eEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         262 RYVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQ---------RIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~---------~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      ..++|.+|++++|.|... +...+.+.|.+..+.+.   .+..++         |+.+...+  ...+.|+|.+++.+|+
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~Ia---tY~~~g~~i~~~Fk~Rve~mS~s--~~~StItIknVt~sDe   97 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIA---GYGPCGPVIVDKFKNKIEYLSKS--FNESTILIKNVSLKDN   97 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEE---EEecCCcEEChhhcCeEEEeccC--CCcceEEEEeCChhhC
Confidence            356788999999999985 55678899999543221   111111         22111111  1357899999999999


Q ss_pred             eEEEEEEecC-CC-ceeEEEEEEEEE
Q psy1672         332 GRFYCVAENR-AG-IADANFTLQVTY  355 (600)
Q Consensus       332 G~Y~C~a~N~-~G-~~~~~v~L~V~~  355 (600)
                      |.|+|...-. .| ..+....|.|+.
T Consensus        98 GcY~C~F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987         98 GCYTCIFNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             eEEEEEEEecCCCCCceeEEEEEEEc
Confidence            9999998754 35 667777787754

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.96  E-value=0.0041  Score=65.62  Aligned_cols=132  Identities=20%  Similarity=0.274  Sum_probs=83.0

Q ss_pred             EEEccCCCCCccCCCCCCCCceEEEeeC-CCCCCCChhhhcccCCCCccEEEeecc-cCcccCccccCCCCCccEEEccC
Q psy1672          31 WMECRDKFLITIPEAPESELTQVLDMSG-NNLQILPKEAFRRAGLLNLQKLFLARC-HIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        31 ~v~C~~~~L~~ip~~~~~~~l~~L~Ls~-n~L~~l~~~~f~~~~l~~L~~L~L~~n-~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      .++-.+..|+.+|. ++.. ++.|.+++ +.++.+|...     ..+|+.|.|++| .+..++       ..|+.|+|+.
T Consensus        56 ~L~Is~c~L~sLP~-LP~s-LtsL~Lsnc~nLtsLP~~L-----P~nLe~L~Ls~Cs~L~sLP-------~sLe~L~L~~  121 (426)
T PRK15386         56 RLYIKDCDIESLPV-LPNE-LTEITIENCNNLTTLPGSI-----PEGLEKLTVCHCPEISGLP-------ESVRSLEIKG  121 (426)
T ss_pred             EEEeCCCCCcccCC-CCCC-CcEEEccCCCCcccCCchh-----hhhhhheEccCcccccccc-------cccceEEeCC
Confidence            45555668899984 5554 99999987 4567777533     358999999998 666554       3578888887


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCC-CCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCC
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNP-ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLS  184 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~-i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~  184 (600)
                      +.+..+..  +  .++|+.|.+.++. ........ .-..+|+.|++++|....++ ..+  ..+|+.|+++.+...
T Consensus       122 n~~~~L~~--L--PssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~LP-~~L--P~SLk~L~ls~n~~~  190 (426)
T PRK15386        122 SATDSIKN--V--PNGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNIILP-EKL--PESLQSITLHIEQKT  190 (426)
T ss_pred             CCCccccc--C--cchHhheecccccccccccccc-ccCCcccEEEecCCCcccCc-ccc--cccCcEEEecccccc
Confidence            76554332  1  1357777775432 21110000 11257999999988766443 222  368899998876433

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=96.94  E-value=0.0024  Score=55.64  Aligned_cols=82  Identities=21%  Similarity=0.324  Sum_probs=52.2

Q ss_pred             cccccccccccccceeeeEeecC-CCCeeEEEEc--Ceecc----CCccc--CccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSI-PPAAISWYWN--GRLLL----NNTAF--SSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~~--g~~l~----~~~~~--~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ..+..+.+..|+.++|.|..... ....+.|++.  +..+.    .....  ....|+.+..+. ......|.|.+++.+
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~-~~~~~sL~I~~~~~~   82 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQK-AQKSISLTISALQLE   82 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEec-cCCEEEEEECCCCHH
Confidence            34567888999999999998753 4567999983  22110    00000  111333332111 112457999999999


Q ss_pred             CCeEEEEEEecC
Q psy1672         330 DSGRFYCVAENR  341 (600)
Q Consensus       330 d~G~Y~C~a~N~  341 (600)
                      |+|.|.|.+...
T Consensus        83 Dsg~Y~C~~~~~   94 (116)
T cd07706          83 DSAKYFCALSTL   94 (116)
T ss_pred             HCEEEEEEEECC
Confidence            999999999854

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>KOG2739|consensus

Probab=96.90  E-value=0.0005  Score=67.08  Aligned_cols=60  Identities=23%  Similarity=0.334  Sum_probs=28.4

Q ss_pred             CCCccEEEeecccCcccCccccCCCCCccEEEccCCCCC---CCCccccCCCCCCCEEEccCCCCC
Q psy1672          74 LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLT---SIPSLTFQSVRFLRDLNLARNPIS  136 (600)
Q Consensus        74 l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~---~l~~~~f~~l~~L~~L~Ls~N~i~  136 (600)
                      +.+|+.|.+.+..++.+..  |-.|++|+.|.++.|.+.   .+.. ....+++|++|+|++|+|+
T Consensus        42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccchhhhhhhccceeeccc--CCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccc
Confidence            4455555555555555433  445555566666555222   1111 1122355555555555544

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.90  E-value=0.008  Score=50.14  Aligned_cols=69  Identities=19%  Similarity=0.415  Sum_probs=45.7

Q ss_pred             cccceeeeEeecC-CCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         269 SENATVVCRVDSI-PPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       269 G~~v~L~C~v~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      ++.++|.|.+.|. |.. .+.|.++|..+.....   ........++.+...+.|.+...   +.+.|+|.+.+..-
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~---~~~~~~~~d~ty~~~s~l~v~~~---~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVE---SGEILPNGDGTYQLWVTLEVPPE---DKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECccccc---ccceEECCCCeEEEEEEEEECCC---CCCEEEEEEEeCCC
Confidence            6789999999986 443 8899999864333221   11222334555666667766553   66799999988654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.85  E-value=0.0061  Score=51.45  Aligned_cols=73  Identities=16%  Similarity=0.211  Sum_probs=49.5

Q ss_pred             cccccccceeeeEeec-CCCCe--eEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe-EEEEEEec
Q psy1672         265 EAVSSENATVVCRVDS-IPPAA--ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG-RFYCVAEN  340 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g-~P~p~--i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G-~Y~C~a~N  340 (600)
                      .+.+|+.++|.|.+.| .|.+.  |.|++.++.+...... .      .........+.+.+. +...|.| .|+|.|++
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~-~------~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l   83 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFG-D------NTKSPVNAPATITIT-VDREDHGANFSCETEL   83 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceec-c------ccCCCceeEEEEEEe-cchhhCCcEEEEEEEe
Confidence            3578999999999995 67776  7999998887543210 0      011122344566664 5567777 89999999


Q ss_pred             CCCce
Q psy1672         341 RAGIA  345 (600)
Q Consensus       341 ~~G~~  345 (600)
                      ..+..
T Consensus        84 ~l~~~   88 (100)
T cd05755          84 DLRPE   88 (100)
T ss_pred             ccCcc
Confidence            87653

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>KOG2739|consensus

Probab=96.83  E-value=0.00048  Score=67.18  Aligned_cols=105  Identities=19%  Similarity=0.269  Sum_probs=72.9

Q ss_pred             cCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCC--CCCccCcccccCCCCcceeeCCCCcCcccCh-hhhcCCC
Q psy1672          95 LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN--PISKIEKGAFQFVPGLVKLDMSESRLEHISP-EAFTGAK  171 (600)
Q Consensus        95 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N--~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~  171 (600)
                      +..+..|+.|.+.+..++++..  |..|++|+.|.++.|  ++..-..-....+++|++|+|++|+|+.+.. ..+..+.
T Consensus        39 ~d~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~  116 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE  116 (260)
T ss_pred             cccccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence            3455677788888888777654  667899999999999  4433222223456899999999998875421 2344677


Q ss_pred             CCCEEEcCCCcCCCCC---cccccccccccEEE
Q psy1672         172 SLESIKLNGNRLSHFP---VRSVEPLLKLMMIE  201 (600)
Q Consensus       172 ~L~~L~Ls~N~l~~l~---~~~~~~l~~L~~L~  201 (600)
                      +|..|++.+|..+.+.   ...|.-+++|+.|+
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            8888899888777654   24455567777766

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=96.81  E-value=0.0043  Score=52.18  Aligned_cols=78  Identities=13%  Similarity=0.259  Sum_probs=48.9

Q ss_pred             ccccccccceeeeEeec-CCCCeeEEEEcCe-----ecc-CCccc-CccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         264 VEAVSSENATVVCRVDS-IPPAAISWYWNGR-----LLL-NNTAF-SSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g-~P~p~i~W~~~g~-----~l~-~~~~~-~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      +.+..|++++|.|.... .....+.|++...     .+. ..... ....+..+..+. ......|+|.+++.+|+|.|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~-~~~~~~L~I~~v~~~DsG~Y~   80 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDP-DNGVFTVTLNQLRKEDAGWYW   80 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecC-CCCEEEEEEcCCCHHHCEEEE
Confidence            35678999999998874 3456789998431     111 00000 111233332211 123468999999999999999


Q ss_pred             EEEecCC
Q psy1672         336 CVAENRA  342 (600)
Q Consensus       336 C~a~N~~  342 (600)
                      |.+....
T Consensus        81 C~~~~~~   87 (98)
T cd05716          81 CGVGDDG   87 (98)
T ss_pred             EEcccCC
Confidence            9988764

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=96.79  E-value=0.0056  Score=53.67  Aligned_cols=81  Identities=19%  Similarity=0.244  Sum_probs=50.4

Q ss_pred             ccccccccccccceeeeEeecCC------CCeeEEEEc--Ce---ecc---C-Cccc--CccceEEEeeCCceeeeeeEE
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIP------PAAISWYWN--GR---LLL---N-NTAF--SSYQRIFVIEQGEYERKSSLV  322 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P------~p~i~W~~~--g~---~l~---~-~~~~--~~~~~~~~~~~g~~~~~s~L~  322 (600)
                      .+..+.+..|+.|+|.|......      ...+.|++.  +.   .+.   . ....  ...+|+.+..+ .......|.
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~-~~~~~~sL~   83 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGD-LGKKNCSLL   83 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecC-CCCCEEEEE
Confidence            35667889999999999875221      245899983  21   110   0 0000  01123333211 123456899


Q ss_pred             EecCCCCCCeEEEEEEecC
Q psy1672         323 LTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       323 I~~v~~~d~G~Y~C~a~N~  341 (600)
                      |.+++.+|+|.|.|.+...
T Consensus        84 I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          84 ISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EccCChhhCeEEEEEEEcC
Confidence            9999999999999988764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>KOG4222|consensus

Probab=96.73  E-value=0.007  Score=69.55  Aligned_cols=94  Identities=28%  Similarity=0.378  Sum_probs=65.2

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCee-ccC-CcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRL-LLN-NTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~-l~~-~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      |.+...+....+..|..++|.|.+.|.|+|.+.|.+.|.. +.. ..-+....+..+.-      ++.|+|.+++..|.|
T Consensus       316 P~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~------~g~L~it~v~~~d~g  389 (1281)
T KOG4222|consen  316 PSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSP------TGTLTITNVRQSDEG  389 (1281)
T ss_pred             cccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecC------CCCcccccccccccc
Confidence            3333344555677788999999999999999999996542 222 12222333333333      348999999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEEE
Q psy1672         333 RFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      .|.|...+.+|.......+.++
T Consensus       390 ~Yvcq~~~~~~ss~~~a~~~qt  411 (1281)
T KOG4222|consen  390 YYVCQTQTSAGSSLTKAYLEQT  411 (1281)
T ss_pred             eEeecccccccccccceeEEEE
Confidence            9999999988876555444444

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=96.70  E-value=0.0058  Score=52.20  Aligned_cols=73  Identities=21%  Similarity=0.398  Sum_probs=45.6

Q ss_pred             cccccccceeeeEeecCCCCeeEEEEc--C--eec---cCC----c-ccC----ccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPAAISWYWN--G--RLL---LNN----T-AFS----SYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p~i~W~~~--g--~~l---~~~----~-~~~----~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      .+..|+.|+|.|.+.......+.|++.  |  ..+   ...    . ...    ...+.....+   .....|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~---~~~~~L~I~~~~~   78 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRS---SNSFVLTLKNFQK   78 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEec---CCEEEEEECCCCH
Confidence            367899999999986555567999993  3  211   100    0 000    0112222111   1355799999999


Q ss_pred             CCCeEEEEEEec
Q psy1672         329 SDSGRFYCVAEN  340 (600)
Q Consensus       329 ~d~G~Y~C~a~N  340 (600)
                      +|+|.|.|.+.+
T Consensus        79 sDsgtY~Ca~~~   90 (104)
T cd05720          79 ENEGYYFCSVAS   90 (104)
T ss_pred             HHCEEEEEEEcc
Confidence            999999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.67  E-value=0.0017  Score=63.64  Aligned_cols=159  Identities=25%  Similarity=0.235  Sum_probs=108.3

Q ss_pred             ceEEEeeCCCCCCCChhhhc--ccCCCCccEEEeecccCccc----------CccccCCCCCccEEEccCCCCCCCCcc-
Q psy1672          51 TQVLDMSGNNLQILPKEAFR--RAGLLNLQKLFLARCHIGQI----------DSGALDGLTNLIEIDLSDNLLTSIPSL-  117 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~--~~~l~~L~~L~L~~n~l~~i----------~~~~f~~l~~L~~L~Ls~N~l~~l~~~-  117 (600)
                      +..++|++|.|..--.....  .++-.+|+..+++.-.....          .-.++.++++|+.++||.|.+..-.+. 
T Consensus        32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~  111 (388)
T COG5238          32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE  111 (388)
T ss_pred             eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence            88999999998632111111  12566788888776433221          124577899999999999988743221 


Q ss_pred             ---ccCCCCCCCEEEccCCCCCccCccccc-------------CCCCcceeeCCCCcCcccChhh----hcCCCCCCEEE
Q psy1672         118 ---TFQSVRFLRDLNLARNPISKIEKGAFQ-------------FVPGLVKLDMSESRLEHISPEA----FTGAKSLESIK  177 (600)
Q Consensus       118 ---~f~~l~~L~~L~Ls~N~i~~l~~~~~~-------------~l~~L~~L~Ls~n~l~~i~~~~----~~~l~~L~~L~  177 (600)
                         .+.....|..|.|++|.+..+...-+.             .-+.|+.+....|++..-+...    +..-.+|+.+.
T Consensus       112 L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vk  191 (388)
T COG5238         112 LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVK  191 (388)
T ss_pred             HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEE
Confidence               345567899999999988765433222             3467999999999998765432    23336889999


Q ss_pred             cCCCcCCCCCc-----ccccccccccEEEccCCcCcc
Q psy1672         178 LNGNRLSHFPV-----RSVEPLLKLMMIELHDNPWVC  209 (600)
Q Consensus       178 Ls~N~l~~l~~-----~~~~~l~~L~~L~l~~N~~~C  209 (600)
                      +..|.|.--..     ..+..+++|++|++.+|.|+-
T Consensus       192 i~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         192 IQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             eeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence            99998764322     233456899999999998764

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=96.56  E-value=0.014  Score=47.58  Aligned_cols=71  Identities=20%  Similarity=0.287  Sum_probs=47.2

Q ss_pred             cccccccceeeeEeecCCC--CeeEEEEcCee-ccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         265 EAVSSENATVVCRVDSIPP--AAISWYWNGRL-LLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~--p~i~W~~~g~~-l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      .+..|++++|.|.....+.  +.|+|.-.+.. .....           .+     .-.|.+..+...|+|.++|++.-.
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~-----------~~-----~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN-----------QD-----KKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc-----------CC-----ccEEEeceeCcccCCEEEEEEEEC
Confidence            4568999999999975444  49999874422 11100           01     126889999999999999999733


Q ss_pred             CCceeEEEEEEE
Q psy1672         342 AGIADANFTLQV  353 (600)
Q Consensus       342 ~G~~~~~v~L~V  353 (600)
                        .....+.+.|
T Consensus        74 --~k~~~~~~~V   83 (88)
T cd07694          74 --SSEKTLKLDI   83 (88)
T ss_pred             --ceEEEEEeeE
Confidence              3333444444

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>KOG3665|consensus

Probab=96.55  E-value=0.0016  Score=74.11  Aligned_cols=131  Identities=17%  Similarity=0.137  Sum_probs=85.5

Q ss_pred             CCCccEEEeecccCc--ccCccccCCCCCccEEEccCCCCCCCC-ccccCCCCCCCEEEccCCCCCccCcccccCCCCcc
Q psy1672          74 LLNLQKLFLARCHIG--QIDSGALDGLTNLIEIDLSDNLLTSIP-SLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLV  150 (600)
Q Consensus        74 l~~L~~L~L~~n~l~--~i~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~  150 (600)
                      -.+|++|++++...-  ......-.-||.|+.|.+++-.+..-. .....++++|..||+++..++.+  ..++.+++|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            457888888775432  111122345788888888776554221 12355778899999999988877  4467888888


Q ss_pred             eeeCCCCcCccc-ChhhhcCCCCCCEEEcCCCcCCCCC------cccccccccccEEEccCCc
Q psy1672         151 KLDMSESRLEHI-SPEAFTGAKSLESIKLNGNRLSHFP------VRSVEPLLKLMMIELHDNP  206 (600)
Q Consensus       151 ~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~l~------~~~~~~l~~L~~L~l~~N~  206 (600)
                      .|.+.+=.+..- .-..+-+|.+|+.||+|........      .+....+++|+.||.++..
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence            888877665542 1234457899999999876554433      1233447888888877654

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.52  E-value=0.0018  Score=40.99  Aligned_cols=28  Identities=25%  Similarity=0.731  Sum_probs=22.4

Q ss_pred             CCCCCCeecccCCceEEEccCCCCCccCCCCC
Q psy1672          16 SCPSTCICKWKGGKQWMECRDKFLITIPEAPE   47 (600)
Q Consensus        16 ~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~   47 (600)
                      .||..|.|.    ..+|+|++++|+++|..++
T Consensus         1 ~CP~~C~C~----~~~V~C~~~~L~~vP~~lP   28 (28)
T PF01462_consen    1 ACPRPCTCS----GLTVDCSGRGLTAVPSDLP   28 (28)
T ss_dssp             SSETTSEEE----TTEEEETTSS-SSS-STS-
T ss_pred             CcCCCCEec----CCEeECCCCCCCccCCCCc
Confidence            599999999    5789999999999998653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=96.48  E-value=0.011  Score=50.82  Aligned_cols=75  Identities=12%  Similarity=0.312  Sum_probs=44.5

Q ss_pred             cccccccceeeeEeecCC-CCeeEEEEc--C---eecc----CCc----ccCc---cceEEEeeCCceeeeeeEEEecCC
Q psy1672         265 EAVSSENATVVCRVDSIP-PAAISWYWN--G---RLLL----NNT----AFSS---YQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P-~p~i~W~~~--g---~~l~----~~~----~~~~---~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      .+..|+.++|.|.+.+.. ...+.|++.  |   +.+.    ...    .+..   ..+..+.... ......|+|.+++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~-~~~~~~L~I~~~~   80 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTS-DSSRYRLHINRVK   80 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEEC-CCCEEEEEECCCC
Confidence            467899999999987543 457999983  2   1100    000    0000   0111111100 0123579999999


Q ss_pred             CCCCeEEEEEEec
Q psy1672         328 ESDSGRFYCVAEN  340 (600)
Q Consensus       328 ~~d~G~Y~C~a~N  340 (600)
                      .+|+|.|.|...+
T Consensus        81 ~~Dsg~YyCa~~~   93 (107)
T cd07700          81 PEDSGTYFCMTVG   93 (107)
T ss_pred             HHHCEEEEEeEcC
Confidence            9999999999863

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>KOG2120|consensus

Probab=96.43  E-value=0.00021  Score=70.66  Aligned_cols=150  Identities=19%  Similarity=0.187  Sum_probs=86.7

Q ss_pred             ceEEEeeCCCCCCCC-hhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCC-CCCCCCc-cccCCCCCCCE
Q psy1672          51 TQVLDMSGNNLQILP-KEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN-LLTSIPS-LTFQSVRFLRD  127 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~-~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~~L~~  127 (600)
                      +++|||++..|+.-. ..+..  .+.+|+.|.|.++++..-....++...+|+.|||+.+ .+++..- -.|.++..|..
T Consensus       187 lq~lDLS~s~it~stl~~iLs--~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILS--QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHH--HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            889999998887311 12222  5788999999999887655566788889999999876 4543221 23567788888


Q ss_pred             EEccCCCCCccCccc-cc-CCCCcceeeCCCCc--C--cccChhhhcCCCCCCEEEcCCCc-CCCCCcccccccccccEE
Q psy1672         128 LNLARNPISKIEKGA-FQ-FVPGLVKLDMSESR--L--EHISPEAFTGAKSLESIKLNGNR-LSHFPVRSVEPLLKLMMI  200 (600)
Q Consensus       128 L~Ls~N~i~~l~~~~-~~-~l~~L~~L~Ls~n~--l--~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L  200 (600)
                      |+|+++.+..-.... .. --.+|..|+|+++.  +  ..+ ..-...+++|.+|||++|. |+.--...|.+++.|++|
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            888888654211110 00 12356666666542  1  111 1112356677777777653 222111233344555555


Q ss_pred             Ecc
Q psy1672         201 ELH  203 (600)
Q Consensus       201 ~l~  203 (600)
                      .+.
T Consensus       344 Sls  346 (419)
T KOG2120|consen  344 SLS  346 (419)
T ss_pred             ehh
Confidence            544

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=96.38  E-value=0.018  Score=48.23  Aligned_cols=76  Identities=16%  Similarity=0.303  Sum_probs=48.1

Q ss_pred             ccccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCce
Q psy1672         268 SSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA  345 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~  345 (600)
                      ....++|.|.+.|.-+  ..|.|.++|..+.....   ........++++...+.|.+....-.+...|+|.+.......
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~---~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~   89 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAA---STAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF   89 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCcee---ecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence            4456899999998544  37799999987633211   011122345566667777776443334458999999876544


Q ss_pred             e
Q psy1672         346 D  346 (600)
Q Consensus       346 ~  346 (600)
                      +
T Consensus        90 ~   90 (94)
T cd05847          90 E   90 (94)
T ss_pred             e
Confidence            3

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>KOG2123|consensus

Probab=96.36  E-value=0.00021  Score=70.05  Aligned_cols=97  Identities=27%  Similarity=0.318  Sum_probs=75.7

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCcc-ccCCCCCCCEEE
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSL-TFQSVRFLRDLN  129 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~  129 (600)
                      ++.|++.++.|..|.-.  .  .|+.|+.|.|+-|+|+.+.+  |..+++|++|.|..|.|.++..- .+.++++|+.|-
T Consensus        21 vkKLNcwg~~L~DIsic--~--kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDISIC--E--KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             hhhhcccCCCccHHHHH--H--hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            67788888888877532  2  68999999999999999876  88899999999999999887652 357889999999


Q ss_pred             ccCCCCCccCcc-----cccCCCCcceee
Q psy1672         130 LARNPISKIEKG-----AFQFVPGLVKLD  153 (600)
Q Consensus       130 Ls~N~i~~l~~~-----~~~~l~~L~~L~  153 (600)
                      |..|+.-.-...     .+.-|++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            999986543322     244577777764

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=96.35  E-value=0.035  Score=48.00  Aligned_cols=73  Identities=19%  Similarity=0.335  Sum_probs=48.8

Q ss_pred             cccccccceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeC-CceeeeeeEEEecCCCCCCe-EEEEEEec
Q psy1672         265 EAVSSENATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQ-GEYERKSSLVLTNAQESDSG-RFYCVAEN  340 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~-g~~~~~s~L~I~~v~~~d~G-~Y~C~a~N  340 (600)
                      +...|+.++|.|.+.|. |. ..++|++||+.+....     .......+ +++..++.|.+... ..|.| .|+|.+..
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~-----~~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~ytC~V~H   90 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQ-----PNITPEGDSVSYNVTSTVQVKLT-EDDVHSQVTCEVQH   90 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccc-----cceeeCCCCCcEEEEEEEEEECc-cccccCceEEEEEe
Confidence            34568889999999975 43 4889999999875421     12222233 35666777877753 44444 59999998


Q ss_pred             CCC
Q psy1672         341 RAG  343 (600)
Q Consensus       341 ~~G  343 (600)
                      ...
T Consensus        91 ~~l   93 (111)
T cd05772          91 RTL   93 (111)
T ss_pred             CCC
Confidence            753

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=96.31  E-value=0.013  Score=49.69  Aligned_cols=75  Identities=21%  Similarity=0.340  Sum_probs=50.3

Q ss_pred             cccccccceeeeEeecC-C-CCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         265 EAVSSENATVVCRVDSI-P-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~-P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ....++.++|.|.+.|. | ..+|.|.++|..+.....   ........++++...+.|.+....-.+...|+|.+....
T Consensus        13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~---~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQ---TSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEe---ccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            34456789999999974 4 347899999988754321   112222346777777788776555444568999999764

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.26  E-value=0.033  Score=46.67  Aligned_cols=69  Identities=19%  Similarity=0.215  Sum_probs=43.1

Q ss_pred             ccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe-EEEEEEecCCCcee
Q psy1672         270 ENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG-RFYCVAENRAGIAD  346 (600)
Q Consensus       270 ~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G-~Y~C~a~N~~G~~~  346 (600)
                      ....+.|.+. |.|.++|.|+++.   ....    ........+|.+...+.|.+.. +.+|.| .|+|.|.|..-...
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~----~~~~~~~~~g~~tv~S~l~~~p-~~~d~G~~~tC~v~h~~l~~~   86 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTL---GGEA----ETQSKENPNGTVTVTSEYRLVP-SREANGKELTCVVSHPTLQEP   86 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCC---CCcc----eeEeecCCCCCEEEEEEEEEec-CHHHCCCEEEEEEeCcccCCC
Confidence            3456789985 8999999999861   1110    0112223345455566777644 445555 89999999875443

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.23  E-value=0.012  Score=50.08  Aligned_cols=77  Identities=23%  Similarity=0.337  Sum_probs=47.3

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEe--eCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVI--EQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~--~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      .+..+..++|.|.+.|..+.  .+.|.++|+.+........  .....  .++++...+.|.+..-.-.+...|+|.+..
T Consensus        12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~--~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H   89 (102)
T cd05768          12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTT--APMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGH   89 (102)
T ss_pred             HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCccccccc--CcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEe
Confidence            33456789999999986554  5699999987654321000  00011  146666677787744322333479999997


Q ss_pred             CCC
Q psy1672         341 RAG  343 (600)
Q Consensus       341 ~~G  343 (600)
                      ...
T Consensus        90 ~~l   92 (102)
T cd05768          90 EAL   92 (102)
T ss_pred             CCC
Confidence            643

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.16  E-value=0.016  Score=50.61  Aligned_cols=79  Identities=15%  Similarity=0.287  Sum_probs=47.9

Q ss_pred             cccccccccccceeeeEeecCC--CCeeEEEEc--Ceecc------CC--cc-c--CccceEEEeeCCceeeeeeEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIP--PAAISWYWN--GRLLL------NN--TA-F--SSYQRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P--~p~i~W~~~--g~~l~------~~--~~-~--~~~~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      +..+.+..|+.++|.|...+..  ...+.|++.  |+.+.      ..  .. .  ....+.....+. ......|+|.+
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~-~~~~~~L~I~~   82 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDT-SKSTVYLQLNS   82 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEc-cCCEEEEEECC
Confidence            4567788999999999876433  456999982  22110      00  00 0  001122221111 11234699999


Q ss_pred             CCCCCCeEEEEEEec
Q psy1672         326 AQESDSGRFYCVAEN  340 (600)
Q Consensus       326 v~~~d~G~Y~C~a~N  340 (600)
                      ++.+|+|.|.|.+..
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            999999999998875

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.16  E-value=0.029  Score=45.61  Aligned_cols=71  Identities=20%  Similarity=0.323  Sum_probs=48.9

Q ss_pred             ccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         268 SSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      .+..++|.|.+.+.-+.  .|.|.++|..+.....   ........+|++...+.|.+.   ..+...|+|.+......
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~---~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVE---TTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEE---EEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeee---ecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            48899999999975433  6899999988765431   111122467777778888887   33344899999987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.15  E-value=0.0036  Score=61.38  Aligned_cols=156  Identities=22%  Similarity=0.215  Sum_probs=93.5

Q ss_pred             ceEEEeeCCCCC-CCChhhhc-ccCCCCccEEEeecccCcccCcccc-------------CCCCCccEEEccCCCCCCCC
Q psy1672          51 TQVLDMSGNNLQ-ILPKEAFR-RAGLLNLQKLFLARCHIGQIDSGAL-------------DGLTNLIEIDLSDNLLTSIP  115 (600)
Q Consensus        51 l~~L~Ls~n~L~-~l~~~~f~-~~~l~~L~~L~L~~n~l~~i~~~~f-------------~~l~~L~~L~Ls~N~l~~l~  115 (600)
                      ++.++|+.|.+. ..+..... .....+|.+|.|++|++..+...-+             ..-+.|+.+....|++..-+
T Consensus        94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs  173 (388)
T COG5238          94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS  173 (388)
T ss_pred             ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence            788888888875 22221111 1256788888888888765533222             23467888888888877544


Q ss_pred             cc----ccCCCCCCCEEEccCCCCCccCc-----ccccCCCCcceeeCCCCcCcccCh----hhhcCCCCCCEEEcCCCc
Q psy1672         116 SL----TFQSVRFLRDLNLARNPISKIEK-----GAFQFVPGLVKLDMSESRLEHISP----EAFTGAKSLESIKLNGNR  182 (600)
Q Consensus       116 ~~----~f~~l~~L~~L~Ls~N~i~~l~~-----~~~~~l~~L~~L~Ls~n~l~~i~~----~~~~~l~~L~~L~Ls~N~  182 (600)
                      ..    .|....+|+++.+..|.|..-.-     ..+..+.+|+.|+|..|-++....    .++..++.|+.|.+.+|.
T Consensus       174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            32    23344577888888887653211     112346778888888887765432    345566777888888887


Q ss_pred             CCCCCcccc-c-----ccccccEEEccCCc
Q psy1672         183 LSHFPVRSV-E-----PLLKLMMIELHDNP  206 (600)
Q Consensus       183 l~~l~~~~~-~-----~l~~L~~L~l~~N~  206 (600)
                      ++.-....+ .     ..++|..|-+..|.
T Consensus       254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             hccccHHHHHHHhhhhcCCCccccccchhh
Confidence            765442211 1     12455556565554

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=95.94  E-value=0.01  Score=51.57  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=26.1

Q ss_pred             ccCcchhHHHHHHHHHHHHHHHHHHHHHhHhcCC
Q psy1672         363 LGGGHINGISLALFFLIILILIIIIYLLIRMRTI  396 (600)
Q Consensus       363 ~~~~~i~gi~~g~~l~l~lillii~~~~~rkrr~  396 (600)
                      +..+.|+||++|+++++++++++|+|+++|+||+
T Consensus        61 fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk   94 (122)
T PF01102_consen   61 FSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKK   94 (122)
T ss_dssp             SS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             ccccceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4557899999999999999888888887777654

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=95.94  E-value=0.0091  Score=39.36  Aligned_cols=30  Identities=23%  Similarity=0.682  Sum_probs=26.5

Q ss_pred             CCCCCCeecccCCceEEEccCCCCCccCCCCCCC
Q psy1672          16 SCPSTCICKWKGGKQWMECRDKFLITIPEAPESE   49 (600)
Q Consensus        16 ~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~   49 (600)
                      .||..|.|.    ...|+|.+++|+.||..++..
T Consensus         1 ~CP~~C~C~----~~~V~C~~~~L~~vP~~iP~~   30 (33)
T smart00013        1 ACPAPCNCS----GTAVDCSGRGLTEVPLDLPPD   30 (33)
T ss_pred             CcCCCCEEC----CCEeEeCCCCcCccCCCCCcc
Confidence            499999998    468999999999999988764

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.91  E-value=0.039  Score=46.37  Aligned_cols=76  Identities=12%  Similarity=0.217  Sum_probs=47.0

Q ss_pred             ccccccccceeeeEeecC-CCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         264 VEAVSSENATVVCRVDSI-PPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~-P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      ..+..++.++|.|.+.|. -++  .++|.++++......    ........++++...+.|.+..-.-.+.-.|+|.+..
T Consensus         9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~----~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H   84 (96)
T cd07696           9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKAS----IQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH   84 (96)
T ss_pred             HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEE----ecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence            345568899999999988 333  679999864322111    0111233456666677777765332223379999998


Q ss_pred             CCC
Q psy1672         341 RAG  343 (600)
Q Consensus       341 ~~G  343 (600)
                      ..-
T Consensus        85 ~~l   87 (96)
T cd07696          85 PDL   87 (96)
T ss_pred             CCC
Confidence            653

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>smart00406 IGv Immunoglobulin V-Type

Probab=95.90  E-value=0.015  Score=46.40  Aligned_cols=67  Identities=21%  Similarity=0.431  Sum_probs=39.0

Q ss_pred             cceeeeEeecCCCC--eeEEEEcCe--e---ccC----Cccc---CccceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         271 NATVVCRVDSIPPA--AISWYWNGR--L---LLN----NTAF---SSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       271 ~v~L~C~v~g~P~p--~i~W~~~g~--~---l~~----~~~~---~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      ++.|.|.+.....+  .+.|++...  .   +..    ...+   ....|+.+.... ......|.|.+++.+|+|.|.|
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C   79 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDT-SKNDVSLTISNLRVEDTGTYYC   79 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecC-cCCEEEEEEcCCCHHHCEEEEE
Confidence            36799988755443  789998431  1   110    0000   011233333221 1234679999999999999999


Q ss_pred             EE
Q psy1672         337 VA  338 (600)
Q Consensus       337 ~a  338 (600)
                      .+
T Consensus        80 ~v   81 (81)
T smart00406       80 AV   81 (81)
T ss_pred             cC
Confidence            63

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=95.90  E-value=0.054  Score=45.37  Aligned_cols=75  Identities=19%  Similarity=0.205  Sum_probs=45.9

Q ss_pred             ccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe-EEEEEEecCCCceeE
Q psy1672         270 ENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG-RFYCVAENRAGIADA  347 (600)
Q Consensus       270 ~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G-~Y~C~a~N~~G~~~~  347 (600)
                      ....+.|.+. |.|.++|.|+.+..   ...    ........++++...+.|.+.. +.+|.| .|+|.|+|..-....
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~---g~~----~~~~~~~~~gt~tv~S~l~~~P-~~~d~Gk~ltC~v~h~al~~~~   87 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLG---GNA----NTTSKENGDGTVTVTSEYSLVP-TPEANGKEVTCKVEHETLQEPQ   87 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCC---CCe----eEEEEeCCCCCEEEEEEEEEec-CHHHCCCEEEEEEeCcccCCCe
Confidence            3457899887 89999999998621   100    0111222344555566777644 444555 899999998755554


Q ss_pred             EEEEE
Q psy1672         348 NFTLQ  352 (600)
Q Consensus       348 ~v~L~  352 (600)
                      .+.+.
T Consensus        88 ~~~~~   92 (95)
T cd07703          88 LLPVT   92 (95)
T ss_pred             EEEEE
Confidence            44443

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA03376 BARF1; Provisional

Probab=95.82  E-value=0.06  Score=50.04  Aligned_cols=87  Identities=20%  Similarity=0.206  Sum_probs=52.5

Q ss_pred             cccccccccceeeeEee---cCCCCeeEEEEcCe----ecc-CC------cccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         263 YVEAVSSENATVVCRVD---SIPPAAISWYWNGR----LLL-NN------TAFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~---g~P~p~i~W~~~g~----~l~-~~------~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      .+.+..|+.+.|.|.-.   ..+.-.|.|++.+.    .+. -.      ..+...+++.++.+.   ..-+|.|.+++.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~---gnvsLvI~~l~l   96 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA---NTFFLVVTAANI   96 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC---CeEEEEEEeeee
Confidence            56678899999999665   22345789999431    111 00      011111222222222   245799999999


Q ss_pred             CCCeEEEEEEecCCCceeEEEEEE
Q psy1672         329 SDSGRFYCVAENRAGIADANFTLQ  352 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G~~~~~v~L~  352 (600)
                      +|.|.|+|..+-.-....+.-.|.
T Consensus        97 SDdGtY~C~fQkge~~~~k~ehLt  120 (221)
T PHA03376         97 SHDGNYLCRMKLGETEVTKQEHLS  120 (221)
T ss_pred             cCCceEEEEEEcCCCceeeeeeee
Confidence            999999999997654444443333

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=95.80  E-value=0.074  Score=44.44  Aligned_cols=69  Identities=22%  Similarity=0.439  Sum_probs=46.5

Q ss_pred             ccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         268 SSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      .+..++|.|.+.|.-+.  .++|.++|..+.....   ........++++...+.|.+..-   +...|+|.+....
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~---~~~~~~~~Dgty~~~s~L~v~~~---~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVS---ETRYYPRQDLSFQKFSYLNFTPE---EGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceE---EeeeEeCCCCcEEEEEEEEEECC---CCCeEEEEEEeCC
Confidence            45567999999985443  6799999988754321   12233445677777778877642   3448999998764

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=95.79  E-value=0.093  Score=43.86  Aligned_cols=71  Identities=21%  Similarity=0.301  Sum_probs=47.1

Q ss_pred             ccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         268 SSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      .|+.++|.|.+.|.-++  .+.|.++|+.+.....   .....-..++++...+.|.+..   .+...|+|.+......
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~---~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~l~   85 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVV---STELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCce---ecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCCCC
Confidence            57889999999985443  6799999988765421   1122233445666667776643   3445899999986543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>KOG1026|consensus

Probab=95.59  E-value=0.031  Score=62.96  Aligned_cols=117  Identities=22%  Similarity=0.373  Sum_probs=64.9

Q ss_pred             CCCCEEEcCCCc---CCCCCcccccccccccEEEccCCcCccccccccchhhhcccCCCC-CCCCCCCCccccccccccc
Q psy1672         171 KSLESIKLNGNR---LSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVP-VQPACTGPERLSGKVFSDL  246 (600)
Q Consensus       171 ~~L~~L~Ls~N~---l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~~~-~~~~C~~p~~l~g~~l~~l  246 (600)
                      +.+....+..+.   +..++...++.+.. ..+.+..|++.|.|..+|+..|-......+ ....|.....  +..+...
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~c~~~~~--~~~~~~~  185 (774)
T KOG1026|consen  109 SRLRRDNLSTNDTGVLGSLSTNGFETLSL-TELSLVGNPFTCSCSIRWLDRYREDGFCVPYRGLACLNFLS--NGTVANE  185 (774)
T ss_pred             ccccccccchhhhcccccccccccccccc-chhhhccCCCCcchhhhHHhhhcccCCCCCchhhHHHhhcC--Cceehhh
Confidence            334444444444   33333334444332 333444499999999999886655332222 2334553322  1222211


Q ss_pred             cccccCc-ccccccccccccccccccceeeeEeecCCCCeeEEEEcC
Q psy1672         247 HADDFAC-KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG  292 (600)
Q Consensus       247 ~~~~~~C-~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g  292 (600)
                      ...  .| .+..........+..+..+++.|.+.+.|.+.+.|+.+.
T Consensus       186 ~~~--~~~~~~~~~~~~~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~  230 (774)
T KOG1026|consen  186 SIQ--LCGEIENRIRAANLTVEEGSSITLKCSQAGIPVPCHYWFPNC  230 (774)
T ss_pred             hhh--hhcchhhhhhhhhhhhcccchheeeeecccCCCcceeeeccc
Confidence            111  13 223333334567788999999999999999999998643

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=95.59  E-value=0.11  Score=43.37  Aligned_cols=69  Identities=13%  Similarity=0.201  Sum_probs=47.2

Q ss_pred             cccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         267 VSSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ..|...+|.|.+.|.-++  .++|.++|..+. ...   ........++++...+.|.+..   .+...|+|.+....
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~---~~~~~p~~d~tyq~~s~l~~~~---~~~~~ysC~V~H~~   83 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVE---QSDLSFSKDWTFYLLKSTEFTP---TKGDEYACRVRHNS   83 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcE---ECcEEECCCCCEEEEEEEEECC---CCCCeEEEEEEECC
Confidence            346667899999985544  679999999876 331   2234445567777677776663   34457999999753

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=95.45  E-value=0.074  Score=46.23  Aligned_cols=81  Identities=22%  Similarity=0.371  Sum_probs=52.1

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEee-CCceeeeeeEEEecCCCCC-CeEEEEEEec
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIE-QGEYERKSSLVLTNAQESD-SGRFYCVAEN  340 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~-~g~~~~~s~L~I~~v~~~d-~G~Y~C~a~N  340 (600)
                      +...+..++|.|.+.+.-+.  .|.|.++|+.+......   ....... ++++...+.|.+....-.+ ...|+|.+..
T Consensus        14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~---~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H   90 (115)
T cd05769          14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVAT---DPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQF   90 (115)
T ss_pred             HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCccc---ccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEE
Confidence            33356678999999975443  78999999887654311   0111222 2566777888887654434 3479999998


Q ss_pred             CCCceeEE
Q psy1672         341 RAGIADAN  348 (600)
Q Consensus       341 ~~G~~~~~  348 (600)
                      ........
T Consensus        91 ~g~~~~~~   98 (115)
T cd05769          91 YGGTDTDK   98 (115)
T ss_pred             eCCcccee
Confidence            76555443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=95.08  E-value=0.15  Score=42.77  Aligned_cols=70  Identities=13%  Similarity=0.260  Sum_probs=43.9

Q ss_pred             cccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         267 VSSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ..+..++|.|.|.|.-++  .++|.++|..+.....   ... ....++++...+.|.+..-..  ...|+|.+....
T Consensus        14 ~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~---~~~-~~~~~dty~~~S~L~vt~~~~--~~~ysC~V~H~g   85 (96)
T cd07697          14 EKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQ---KSE-KDKDNDVYSTTSWLTVTKDSL--GKKFRCIYKHEG   85 (96)
T ss_pred             ccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeE---ecc-EecCCCEEEEEEEEEECchhC--CCeEEEEEEECC
Confidence            345678999999985444  6799999987654321   111 122334566677777664422  235999998743

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=95.07  E-value=0.029  Score=50.56  Aligned_cols=37  Identities=24%  Similarity=0.337  Sum_probs=33.4

Q ss_pred             eEEEecCCCCCCeEEEEEEecCCCceeEEEEEEEEEc
Q psy1672         320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       320 ~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      +|.|.+++..|.|.|+|.+.+..|.....+.|.|...
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~   38 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEP   38 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecC
Confidence            6899999999999999999999999988888888644

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=94.60  E-value=0.064  Score=41.10  Aligned_cols=52  Identities=27%  Similarity=0.474  Sum_probs=34.1

Q ss_pred             cccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         267 VSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..|..|+|+|...+   ..+.|.+++..+....                   ..+.+.+-. +++|.|.|.+.+.
T Consensus         5 isGTtVtlTCP~~~---~~i~W~~n~~~~~g~~-------------------~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSG---DDIKWKKNDQVSQGSD-------------------EKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCC---CCceEEeCCccCCCCC-------------------ceEEeeccC-CCCceEEEEeCCC
Confidence            46889999997652   2399999875443211                   023333444 8899999999754

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=94.47  E-value=0.2  Score=41.94  Aligned_cols=71  Identities=21%  Similarity=0.443  Sum_probs=44.8

Q ss_pred             ccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         268 SSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      .++.++|.|.+.|.-+.  .|+|.++|+. ....  ...... ...++++...+.|.+....-.....|+|.+....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~--~~~~~~-~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGV--KTYPAV-LQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCc--EECCCE-eCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            35578999999985443  6789999987 3321  111111 1226777777778776543222346999999864

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG4597|consensus

Probab=94.46  E-value=0.06  Score=56.48  Aligned_cols=90  Identities=16%  Similarity=0.120  Sum_probs=65.9

Q ss_pred             ccccccccccccceeeeEeecCCCCeeEEEE---cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPPAAISWYW---NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~---~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      .+....+..+++..++|-+.|.+.+.|.|.+   ++..+.-   .    ....+++-..+....|.|-+.+..|.|.|+|
T Consensus       202 cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~---~----~nq~~e~p~vtstcql~ic~ewq~~a~w~tC  274 (560)
T KOG4597|consen  202 CPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVM---R----PNQTVENPVVTSTCQLVICNEWQADAGWYTC  274 (560)
T ss_pred             CcchhhcccchhhcccccccCCcCceeeeehhhccccceee---c----CccccCCcceeeeeeEEEcchhhcCCCceee
Confidence            3445567788999999999999999999976   2222110   0    1112222223445689999999999999999


Q ss_pred             EEecCCCceeEEEEEEEEEc
Q psy1672         337 VAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       337 ~a~N~~G~~~~~v~L~V~~~  356 (600)
                      .|.|.+|..++.|.+.+...
T Consensus       275 s~rcg~g~~~rdv~c~s~~g  294 (560)
T KOG4597|consen  275 SARCGAGFLRRDVPCSSVKG  294 (560)
T ss_pred             ccccccceeeccceeeeecc
Confidence            99999999999998887543

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=94.33  E-value=0.1  Score=40.28  Aligned_cols=61  Identities=25%  Similarity=0.429  Sum_probs=40.2

Q ss_pred             ccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeE
Q psy1672         268 SSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADA  347 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~  347 (600)
                      ..+.|.|.|.+.    .+|.|++ |..+....                  ...|.+......-.|.|.|.+++    ...
T Consensus         5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~~------------------~~tlnLGs~~~DPRG~Y~C~~s~----~~~   57 (69)
T cd07691           5 SEGKVFLKCNGA----TNITWKK-GKEILEVS------------------NTLLDLGSRINDPRGTYSCKESE----PNK   57 (69)
T ss_pred             cCceEEEEecCC----CcEEEec-Cccccccc------------------ccEEeccCcccCCCcceEecCcc----CCC
Confidence            345789999662    5699999 54332111                  12577888888889999999887    233


Q ss_pred             EEEEEEEE
Q psy1672         348 NFTLQVTY  355 (600)
Q Consensus       348 ~v~L~V~~  355 (600)
                      ...|.|.+
T Consensus        58 ~~~LQVyY   65 (69)
T cd07691          58 EKTLQVYY   65 (69)
T ss_pred             cEEEEEEE
Confidence            44555543

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=94.09  E-value=0.23  Score=41.62  Aligned_cols=74  Identities=15%  Similarity=0.162  Sum_probs=48.9

Q ss_pred             ccccccccccee-eeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         263 YVEAVSSENATV-VCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       263 ~~~v~~G~~v~L-~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      .+.+.+|..+.+ .|.+. |.|.++|.|+.+..-..       ........+|++...+.+.+......|--.++|.+..
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-------~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H   82 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-------ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSH   82 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-------ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeC
Confidence            345667788888 88776 89999999997532111       1122334456777777787755544444489999998


Q ss_pred             CCC
Q psy1672         341 RAG  343 (600)
Q Consensus       341 ~~G  343 (600)
                      ..-
T Consensus        83 ~al   85 (97)
T cd07704          83 PAL   85 (97)
T ss_pred             ccc
Confidence            754

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.05  E-value=0.017  Score=34.17  Aligned_cols=16  Identities=69%  Similarity=0.744  Sum_probs=7.8

Q ss_pred             ccEEEccCCCCCCCCc
Q psy1672         101 LIEIDLSDNLLTSIPS  116 (600)
Q Consensus       101 L~~L~Ls~N~l~~l~~  116 (600)
                      |++|||++|+|+.+|+
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            4445555555544444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PHA02633 hypothetical protein; Provisional

Probab=93.98  E-value=0.14  Score=38.56  Aligned_cols=38  Identities=26%  Similarity=0.527  Sum_probs=32.0

Q ss_pred             eeEEEecCCCCCCeEEEEEEecCCCceeEEEEEEEEEc
Q psy1672         319 SSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       319 s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      ..|.|-++..+|+|.|.|+.+|..--...++.+.|...
T Consensus        18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~   55 (63)
T PHA02633         18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR   55 (63)
T ss_pred             ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence            37899999999999999999998766777788877544

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=93.86  E-value=0.14  Score=34.34  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=12.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q psy1672         368 INGISLALFFLIILILIIIIY  388 (600)
Q Consensus       368 i~gi~~g~~l~l~lillii~~  388 (600)
                      .++|++|++++++++++.+++
T Consensus         5 ~IaIIv~V~vg~~iiii~~~~   25 (38)
T PF02439_consen    5 TIAIIVAVVVGMAIIIICMFY   25 (38)
T ss_pred             hhhHHHHHHHHHHHHHHHHHH
Confidence            456666666666666555544

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=93.21  E-value=0.28  Score=41.32  Aligned_cols=71  Identities=21%  Similarity=0.339  Sum_probs=45.3

Q ss_pred             ccccccceeeeEeecCC-C--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe-EEEEEEecC
Q psy1672         266 AVSSENATVVCRVDSIP-P--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG-RFYCVAENR  341 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P-~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G-~Y~C~a~N~  341 (600)
                      ...+..++|.|.+.+.- +  ..|.|.++|.. . ..    ........++++...+.|.+.. ..-..| .|+|.+...
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~-~~----~t~~~~~~dgTys~~S~L~v~~-~~W~~g~~ytC~V~H~   88 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E-AV----QTSAESDQCGCYSVSSVLPGCA-EEWNKGEPFACTVTHP   88 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C-cE----EcCcccCCCCCEEEEEEEEeCH-HHhcCCCeEEEEEECC
Confidence            44678899999999754 2  37899998865 1 11    0111123456677777787663 233445 599999987


Q ss_pred             CC
Q psy1672         342 AG  343 (600)
Q Consensus       342 ~G  343 (600)
                      ..
T Consensus        89 ~l   90 (99)
T cd04986          89 EG   90 (99)
T ss_pred             Cc
Confidence            54

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG2120|consensus

Probab=92.91  E-value=0.0027  Score=63.03  Aligned_cols=131  Identities=21%  Similarity=0.150  Sum_probs=83.4

Q ss_pred             CccEEEeecccCcccC-ccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCC-CCccCc-ccccCCCCccee
Q psy1672          76 NLQKLFLARCHIGQID-SGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP-ISKIEK-GAFQFVPGLVKL  152 (600)
Q Consensus        76 ~L~~L~L~~n~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~-i~~l~~-~~~~~l~~L~~L  152 (600)
                      .|++|+|++..|+.-. ...+..+.+|+.|.|.++++..-.-..+..-.+|+.|+|+.+. ++.... -.|..++.|++|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            5888888887764321 2235667788888888888876444456667789999998753 544322 346678889999


Q ss_pred             eCCCCcCcccChhh-hc-CCCCCCEEEcCCCcCC--CCCc-ccccccccccEEEccCCc
Q psy1672         153 DMSESRLEHISPEA-FT-GAKSLESIKLNGNRLS--HFPV-RSVEPLLKLMMIELHDNP  206 (600)
Q Consensus       153 ~Ls~n~l~~i~~~~-~~-~l~~L~~L~Ls~N~l~--~l~~-~~~~~l~~L~~L~l~~N~  206 (600)
                      +|+.+.+..-.... .. --++|..|+|+++.-.  .-.. .....++.|..|||+++.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence            99888664321111 11 1357788888876321  1111 122456889999998865

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.47  E-value=0.096  Score=32.22  Aligned_cols=21  Identities=52%  Similarity=0.776  Sum_probs=11.6

Q ss_pred             CCccEEEccCCCCCCCCcccc
Q psy1672          99 TNLIEIDLSDNLLTSIPSLTF  119 (600)
Q Consensus        99 ~~L~~L~Ls~N~l~~l~~~~f  119 (600)
                      .+|++|+|++|+|+.++...|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            445555555555555555444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.47  E-value=0.096  Score=32.22  Aligned_cols=21  Identities=52%  Similarity=0.776  Sum_probs=11.6

Q ss_pred             CCccEEEccCCCCCCCCcccc
Q psy1672          99 TNLIEIDLSDNLLTSIPSLTF  119 (600)
Q Consensus        99 ~~L~~L~Ls~N~l~~l~~~~f  119 (600)
                      .+|++|+|++|+|+.++...|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            445555555555555555444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.21  E-value=0.061  Score=31.80  Aligned_cols=16  Identities=31%  Similarity=0.293  Sum_probs=8.3

Q ss_pred             ccEEEeecccCcccCc
Q psy1672          77 LQKLFLARCHIGQIDS   92 (600)
Q Consensus        77 L~~L~L~~n~l~~i~~   92 (600)
                      |++|+|++|+|+.|++
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            4555555555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.75  E-value=0.1  Score=28.79  Aligned_cols=13  Identities=62%  Similarity=0.710  Sum_probs=4.4

Q ss_pred             ccEEEccCCCCCC
Q psy1672         101 LIEIDLSDNLLTS  113 (600)
Q Consensus       101 L~~L~Ls~N~l~~  113 (600)
                      |+.|+|++|+|++
T Consensus         3 L~~L~l~~n~L~~   15 (17)
T PF13504_consen    3 LRTLDLSNNRLTS   15 (17)
T ss_dssp             -SEEEETSS--SS
T ss_pred             cCEEECCCCCCCC
Confidence            4444444444443

...

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=91.33  E-value=0.64  Score=40.14  Aligned_cols=75  Identities=17%  Similarity=0.135  Sum_probs=44.4

Q ss_pred             cccccccccceeeeEeecCCC---CeeEEEE--cCeecc------CC--cccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPP---AAISWYW--NGRLLL------NN--TAFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~---p~i~W~~--~g~~l~------~~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ...+..|..++|.|++.|...   -.++|.+  ++ .+.      ..  .......+.....+ .......|+|.+++.+
T Consensus         7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~-~s~ntv~L~l~~L~a~   84 (115)
T cd05721           7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGT-LGNEQVNFTLQNLRAN   84 (115)
T ss_pred             CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEe-CCCCEEEEEEcCCCHH
Confidence            344566778999999976443   3578888  33 211      00  00011122222211 1234568999999999


Q ss_pred             CCeEEEEEEe
Q psy1672         330 DSGRFYCVAE  339 (600)
Q Consensus       330 d~G~Y~C~a~  339 (600)
                      |++.|.|..+
T Consensus        85 DTa~Y~Ca~e   94 (115)
T cd05721          85 QTDIYFCKIE   94 (115)
T ss_pred             HCeEEEEEee
Confidence            9999999653

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>KOG1480|consensus

Probab=91.03  E-value=0.13  Score=57.07  Aligned_cols=71  Identities=23%  Similarity=0.376  Sum_probs=53.4

Q ss_pred             cccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         263 YVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ...+..++...+.|+.. +.|...+.|++++..+....      .....      ....+++..+...|.|.|+|+|.|.
T Consensus       138 ~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~------n~~~~------~d~~li~~~arlsd~~nytc~a~ni  205 (909)
T KOG1480|consen  138 GQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDA------NVIRA------SDHNLIISQARLSDSGNYTCEATNI  205 (909)
T ss_pred             hheecccccccccccCcccchhhhhhccccCCCCCccc------cchhh------hcCCccccchhhhhcccceeeeehh
Confidence            34566677888888765 88999999999887666522      11111      2236889999999999999999999


Q ss_pred             CCce
Q psy1672         342 AGIA  345 (600)
Q Consensus       342 ~G~~  345 (600)
                      ++..
T Consensus       206 ~~~r  209 (909)
T KOG1480|consen  206 VAKR  209 (909)
T ss_pred             hccc
Confidence            9865

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=90.50  E-value=0.49  Score=44.90  Aligned_cols=24  Identities=17%  Similarity=0.383  Sum_probs=13.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHH
Q psy1672         366 GHINGISLALFFLIILILIIIIYL  389 (600)
Q Consensus       366 ~~i~gi~~g~~l~l~lillii~~~  389 (600)
                      .+++||++|++.++++|++++++.
T Consensus        38 ~I~iaiVAG~~tVILVI~i~v~vR   61 (221)
T PF08374_consen   38 KIMIAIVAGIMTVILVIFIVVLVR   61 (221)
T ss_pred             eeeeeeecchhhhHHHHHHHHHHH
Confidence            355666666666555555554443

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins

Probab=90.41  E-value=1.1  Score=42.64  Aligned_cols=48  Identities=17%  Similarity=0.194  Sum_probs=25.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhHhcCCCCCCCCCCCcceeeccCC
Q psy1672         367 HINGISLALFFLIILILIIIIYLLIRMRTITYPNSKNPAQIEVMANGN  414 (600)
Q Consensus       367 ~i~gi~~g~~l~l~lillii~~~~~rkrr~~~~~~~~~~~~~~~~~~~  414 (600)
                      .+|++++.+.+++++++++..|+++.||....+..+-.++.+...++.
T Consensus       101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~~~~~rl~Ee~~~vEng~  148 (202)
T PF06365_consen  101 TLIALVTSGSFLLLAILLGAGYCCHQRRSWSKKGQRLGEELYTVENGY  148 (202)
T ss_pred             EEEehHHhhHHHHHHHHHHHHHHhhhhccCCcchhhhccCceecccCc
Confidence            344555444344444444455555555544455555666666665543

The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=90.32  E-value=0.058  Score=45.17  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             ccCcchhHHHHHHHHHHHHHHHHHHHHHhHhcC
Q psy1672         363 LGGGHINGISLALFFLIILILIIIIYLLIRMRT  395 (600)
Q Consensus       363 ~~~~~i~gi~~g~~l~l~lillii~~~~~rkrr  395 (600)
                      +..+.|+||++|+++++..++.+++++|++|||
T Consensus        63 ls~gaiagi~vg~~~~v~~lv~~l~w~f~~r~k   95 (96)
T PTZ00382         63 LSTGAIAGISVAVVAVVGGLVGFLCWWFVCRGK   95 (96)
T ss_pred             cccccEEEEEeehhhHHHHHHHHHhheeEEeec
Confidence            344678888888776665555444444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.20  E-value=0.21  Score=30.66  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=13.0

Q ss_pred             CCccEEEeecccCcccCccccC
Q psy1672          75 LNLQKLFLARCHIGQIDSGALD   96 (600)
Q Consensus        75 ~~L~~L~L~~n~l~~i~~~~f~   96 (600)
                      .+|+.|+|++|+|+.+++++|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4566666666666666555553

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.20  E-value=0.21  Score=30.66  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=13.0

Q ss_pred             CCccEEEeecccCcccCccccC
Q psy1672          75 LNLQKLFLARCHIGQIDSGALD   96 (600)
Q Consensus        75 ~~L~~L~L~~n~l~~i~~~~f~   96 (600)
                      .+|+.|+|++|+|+.+++++|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4566666666666666555553

>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P

Probab=89.95  E-value=0.063  Score=45.21  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhHhcCCCCC
Q psy1672         378 LIILILIIIIYLLIRMRTITYP  399 (600)
Q Consensus       378 ~l~lillii~~~~~rkrr~~~~  399 (600)
                      +|+.+++++-+||+|||..++.
T Consensus        34 VILgiLLliGCWYckRRSGYk~   55 (118)
T PF14991_consen   34 VILGILLLIGCWYCKRRSGYKT   55 (118)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHhheeeeecchhhh
Confidence            3444455566777776666543

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=89.60  E-value=0.11  Score=39.34  Aligned_cols=26  Identities=19%  Similarity=0.502  Sum_probs=0.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHhc
Q psy1672         369 NGISLALFFLIILILIIIIYLLIRMR  394 (600)
Q Consensus       369 ~gi~~g~~l~l~lillii~~~~~rkr  394 (600)
                      +|+++|+++++++++++|.++.+|.|
T Consensus        12 aavIaG~Vvgll~ailLIlf~iyR~r   37 (64)
T PF01034_consen   12 AAVIAGGVVGLLFAILLILFLIYRMR   37 (64)
T ss_dssp             -------------------------S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444433433333333333443

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PHA03042 CD47-like protein; Provisional

Probab=89.49  E-value=2.1  Score=42.28  Aligned_cols=70  Identities=21%  Similarity=0.460  Sum_probs=44.2

Q ss_pred             cccceeeeEeecC-----CCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         269 SENATVVCRVDSI-----PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       269 G~~v~L~C~v~g~-----P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      .+++.++|.+...     ..-.+.|..+++..-.             .+++  +.++|.+.... .-.|+|+|.|.+...
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~-------------~n~t--n~aSL~~~f~~-~l~GNYTCEv~~l~n   94 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFK-------------KNNT--NTSSLKFNFSK-NLSGNYTCEAINKFN   94 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEE-------------ecCC--cceEEEEeccc-cCCCceeEEEeeccc
Confidence            3567889988642     3456899998765421             1222  23467665544 457999999998765


Q ss_pred             ceeEEEEEEEE
Q psy1672         344 IADANFTLQVT  354 (600)
Q Consensus       344 ~~~~~v~L~V~  354 (600)
                      .....+.|...
T Consensus        95 ~gk~~IeLk~~  105 (286)
T PHA03042         95 KIKNTIELQYV  105 (286)
T ss_pred             CccEEEEEEEE
Confidence            55555555554

>KOG0473|consensus

Probab=89.30  E-value=0.0093  Score=57.31  Aligned_cols=62  Identities=18%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             cCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcC
Q psy1672         144 QFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       144 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~  207 (600)
                      ..++.|..|+++.|++... +..++.+..+.++++..|.++..| ..+..++.++.+++.+|+|
T Consensus        62 s~~t~~~rl~~sknq~~~~-~~d~~q~~e~~~~~~~~n~~~~~p-~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   62 SILTRLVRLDLSKNQIKFL-PKDAKQQRETVNAASHKNNHSQQP-KSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             HHHHHHHHHhccHhhHhhC-hhhHHHHHHHHHHHhhccchhhCC-ccccccCCcchhhhccCcc
Confidence            3344444444444444444 233444444455555555555554 2345555555666666553

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=89.18  E-value=0.73  Score=40.71  Aligned_cols=82  Identities=11%  Similarity=0.309  Sum_probs=44.1

Q ss_pred             cccceeeeEeecC-----CCCeeEEEEcCeeccCC--cc----cCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEE
Q psy1672         269 SENATVVCRVDSI-----PPAAISWYWNGRLLLNN--TA----FSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCV  337 (600)
Q Consensus       269 G~~v~L~C~v~g~-----P~p~i~W~~~g~~l~~~--~~----~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~  337 (600)
                      .++|.++|.+...     +.-.|.|.++|+.+-..  ..    ...+....+  ..-.....+|.+...+.- .|+|+|.
T Consensus        27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i--~~l~kG~aSL~~~~~~a~-~GnYTCe  103 (130)
T PF08204_consen   27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKI--SELLKGNASLKMDKSDAV-EGNYTCE  103 (130)
T ss_dssp             -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BE--GGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred             CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccch--hHhhCCCEEEEEcchhcc-ccceEEE
Confidence            5678899988642     23358999988754211  00    000111111  111123456888876654 8999999


Q ss_pred             EecCCCceeEEEEEEE
Q psy1672         338 AENRAGIADANFTLQV  353 (600)
Q Consensus       338 a~N~~G~~~~~v~L~V  353 (600)
                      +.......+..+.|..
T Consensus       104 Vt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  104 VTELSREGETTIELKY  119 (130)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEecCCCceEEEEEEE
Confidence            9988777777777766

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>KOG0473|consensus

Probab=88.21  E-value=0.015  Score=55.93  Aligned_cols=93  Identities=15%  Similarity=0.193  Sum_probs=76.7

Q ss_pred             CcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhh
Q psy1672          87 IGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEA  166 (600)
Q Consensus        87 l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~  166 (600)
                      +++|+-..+......+.||++.|++..+.. .|+-+..|..|+++.|.+..++ ..+.++..+..+++..|.+... |..
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~~-~d~~q~~e~~~~~~~~n~~~~~-p~s  106 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFLP-KDAKQQRETVNAASHKNNHSQQ-PKS  106 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhCh-hhHHHHHHHHHHHhhccchhhC-Ccc
Confidence            456665666777889999999999888766 5777888999999999998885 4467778888899999998888 567


Q ss_pred             hcCCCCCCEEEcCCCc
Q psy1672         167 FTGAKSLESIKLNGNR  182 (600)
Q Consensus       167 ~~~l~~L~~L~Ls~N~  182 (600)
                      ++..+.++++++.+|.
T Consensus       107 ~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen  107 QKKEPHPKKNEQKKTE  122 (326)
T ss_pred             ccccCCcchhhhccCc
Confidence            8899999999888775

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=87.99  E-value=0.33  Score=26.68  Aligned_cols=15  Identities=33%  Similarity=0.693  Sum_probs=6.4

Q ss_pred             CCCEEEcCCCcCCCC
Q psy1672         172 SLESIKLNGNRLSHF  186 (600)
Q Consensus       172 ~L~~L~Ls~N~l~~l  186 (600)
                      +|+.|+|++|+|+.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555555544

...

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=87.69  E-value=0.35  Score=52.12  Aligned_cols=20  Identities=45%  Similarity=0.494  Sum_probs=15.6

Q ss_pred             eEEEecCCCCCCeEEEEEEe
Q psy1672         320 SLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       320 ~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      .|++.++...++|.|.|++.
T Consensus       270 ~l~f~~a~~~~sGLYv~V~~  289 (439)
T PF02480_consen  270 DLQFTNAPESASGLYVFVVY  289 (439)
T ss_dssp             SEEESS--GGG-EEEEEEEE
T ss_pred             ceEecCCCcccCceEEEEEE
Confidence            68999999999999999987

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=87.50  E-value=0.86  Score=44.81  Aligned_cols=49  Identities=31%  Similarity=0.485  Sum_probs=36.9

Q ss_pred             CCCeeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         282 PPAAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       282 P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ..|.+.|.- +|+.+...+      .+.+.+.|      .|.+.+...+++|.|+|+.+-..
T Consensus        11 iDP~y~W~GP~g~~l~gn~------~~nIT~TG------~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNS------YVNITETG------KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCC------eEEEccCc------eEEeeccccccCCceEEEEEEEe
Confidence            457899998 566555332      45555555      79999999999999999987554

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03286 envelope glycoprotein E; Provisional

Probab=86.95  E-value=0.82  Score=48.10  Aligned_cols=20  Identities=45%  Similarity=0.566  Sum_probs=18.3

Q ss_pred             eEEEecCCCCCCeEEEEEEe
Q psy1672         320 SLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       320 ~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      +|.+.|+...++|.|.|++.
T Consensus       308 nL~f~nA~~s~SGLYVfVl~  327 (492)
T PHA03286        308 SFRLANAQPTDAGLYVVVAL  327 (492)
T ss_pred             ceeecCCCcccCceEEEEEE
Confidence            48899999999999999987

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=86.93  E-value=0.098  Score=46.92  Aligned_cols=24  Identities=13%  Similarity=0.350  Sum_probs=13.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHH
Q psy1672         367 HINGISLALFFLIILILIIIIYLL  390 (600)
Q Consensus       367 ~i~gi~~g~~l~l~lillii~~~~  390 (600)
                      .++|+++|+.+.+++++++++|+|
T Consensus        50 IVIGvVVGVGg~ill~il~lvf~~   73 (154)
T PF04478_consen   50 IVIGVVVGVGGPILLGILALVFIF   73 (154)
T ss_pred             EEEEEEecccHHHHHHHHHhheeE
Confidence            566777666555555444444433

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PHA02982 hypothetical protein; Provisional

Probab=86.91  E-value=1.2  Score=42.15  Aligned_cols=83  Identities=16%  Similarity=0.279  Sum_probs=52.0

Q ss_pred             ccccccccccceeeeEee-cCCCCeeEEEE-cCeeccCCcccC-----------ccce-EEEeeCCceeeeeeEEEecCC
Q psy1672         262 RYVEAVSSENATVVCRVD-SIPPAAISWYW-NGRLLLNNTAFS-----------SYQR-IFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~-g~P~p~i~W~~-~g~~l~~~~~~~-----------~~~~-~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      ..+.+..++.|.|.|... +.......|.. ++..+.....-+           ++.. ..+.-+   ...|+|+|.++.
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~---g~~STLTIkk~~  108 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVS---GNSSTFTMKKPD  108 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEe---ccceeEEeccCC
Confidence            345567799999999864 33445678987 333333211100           0000 111111   246799999999


Q ss_pred             CCCCeEEEEEEecCCCceeE
Q psy1672         328 ESDSGRFYCVAENRAGIADA  347 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~~G~~~~  347 (600)
                      .+..|-|+|.|....+..+.
T Consensus       109 i~N~GCYtc~~ks~~~k~E~  128 (251)
T PHA02982        109 PQNLGCFTCEAKDAEGKEET  128 (251)
T ss_pred             cccCCceEEEEecCCCchhe
Confidence            99999999999998766544

>KOG3515|consensus

Probab=86.62  E-value=0.78  Score=51.99  Aligned_cols=77  Identities=27%  Similarity=0.454  Sum_probs=49.0

Q ss_pred             cccccccceeeeEeecCCC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      .+..|+.|.|.|.+.+.|+ ++++|++.++.+..        +....      ....+.........-+.|.|.|.|..|
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~--------~~~~~------~~~~~~~~~~~~~~~~~~~c~a~ns~~   83 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHG--------RYATI------ADPTLVTTGDVRDTVAELNCRAFNSVG   83 (741)
T ss_pred             hhccCCcceeeeecCCCCCCcceEEEecCccccc--------ccccc------cCCceeeecchhhhhhhhhhhhccccc
Confidence            6788999999999997665 68999997654431        11111      122455666666666678888888766


Q ss_pred             ce-eEEEEEEEEE
Q psy1672         344 IA-DANFTLQVTY  355 (600)
Q Consensus       344 ~~-~~~v~L~V~~  355 (600)
                      .. .....+.+.+
T Consensus        84 ~~~~~~~~l~v~~   96 (741)
T KOG3515|consen   84 MPSRCPMILDVDY   96 (741)
T ss_pred             Cceecceeecccc
Confidence            53 3334444433

>PF15050 SCIMP: SCIMP protein

Probab=83.61  E-value=2.5  Score=36.09  Aligned_cols=29  Identities=7%  Similarity=0.104  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcCCCC
Q psy1672         370 GISLALFFLIILILIIIIYLLIRMRTITY  398 (600)
Q Consensus       370 gi~~g~~l~l~lillii~~~~~rkrr~~~  398 (600)
                      .++++++++-+.+.+|++++|+|+.|.++
T Consensus        11 iLAVaII~vS~~lglIlyCvcR~~lRqGk   39 (133)
T PF15050_consen   11 ILAVAIILVSVVLGLILYCVCRWQLRQGK   39 (133)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            33444333333333344445665555443

>KOG3515|consensus

Probab=83.40  E-value=3.5  Score=46.92  Aligned_cols=77  Identities=23%  Similarity=0.379  Sum_probs=48.5

Q ss_pred             ccccccccceeeeEee--cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         264 VEAVSSENATVVCRVD--SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~--g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      .....+..+.+.|.+.  +.|.+.+.|..+++.......-...... ....+.....+.+.+......+.|.|+|.|.|.
T Consensus       107 ~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~-~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr  185 (741)
T KOG3515|consen  107 IFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGA-GALGSSYTEPSLLKQTVSRKADNGNYTCPANNR  185 (741)
T ss_pred             hhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccc-cccCceeccccceeeEEEEecCCceeEcccccc
Confidence            3445678888999665  6778899999988765443210000000 001111122346778888899999999999995

>KOG3864|consensus

Probab=82.30  E-value=0.25  Score=46.86  Aligned_cols=82  Identities=17%  Similarity=0.239  Sum_probs=44.4

Q ss_pred             CCEEEccCCCCCccCcccccCCCCcceeeCCCCc-CcccChhhhc-CCCCCCEEEcCCC-cCCCCCcccccccccccEEE
Q psy1672         125 LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR-LEHISPEAFT-GAKSLESIKLNGN-RLSHFPVRSVEPLLKLMMIE  201 (600)
Q Consensus       125 L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~-~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~  201 (600)
                      ++.++.++..|....-..+.+++.++.|.+.++. +....-+-++ -.++|+.|+|++| +|++-....+.++++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            5666666666655544445555556665555542 1111111111 2467777777765 45555555666666676666


Q ss_pred             ccCCc
Q psy1672         202 LHDNP  206 (600)
Q Consensus       202 l~~N~  206 (600)
                      +.+=+
T Consensus       183 l~~l~  187 (221)
T KOG3864|consen  183 LYDLP  187 (221)
T ss_pred             hcCch
Confidence            65544

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=81.11  E-value=1  Score=46.40  Aligned_cols=30  Identities=20%  Similarity=0.430  Sum_probs=22.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhHhcC
Q psy1672         366 GHINGISLALFFLIILILIIIIYLLIRMRT  395 (600)
Q Consensus       366 ~~i~gi~~g~~l~l~lillii~~~~~rkrr  395 (600)
                      ..++-|++|++|+.++++++|.|++.|||+
T Consensus       270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~  299 (306)
T PF01299_consen  270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRS  299 (306)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhheeEeccc
Confidence            467888888877777777777777766664

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	600
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-27
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		5e-27
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-25
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-25
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		8e-25
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		2e-23
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-21
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		4e-21
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-20
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		5e-17
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-15
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-15
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		5e-15
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		8e-15
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		1e-14
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		4e-14
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		4e-14
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		2e-13
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-13
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		3e-12
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		4e-11
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		4e-11
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		6e-11
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		7e-11
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		1e-08
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		2e-08
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		2e-08
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		3e-08
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		3e-08
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		3e-08
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		4e-08
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		5e-08
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		5e-08
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		6e-08
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		6e-08
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		7e-08
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		9e-08
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-07
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-07
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		3e-07
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		4e-07
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		5e-07
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		5e-07
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		6e-07
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		9e-07
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		1e-06
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		3e-06
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		4e-06
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		6e-06
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		9e-06
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-05
3rez_A	129	Glycoprotein Gpib Variant Length = 129		1e-05
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		1e-05
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		1e-05
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-05
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		5e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		5e-05
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		5e-05
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		6e-05
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		6e-05
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		9e-05
3rfe_A	130	Crystal Structure Of Glycoprotein Gpib Ectodomain L		1e-04
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		1e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		1e-04
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		1e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		2e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		2e-04
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-04
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		4e-04
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		4e-04
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		4e-04
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		5e-04
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		5e-04
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		6e-04
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		7e-04
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		7e-04

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 180/415 (43%), Gaps = 96/415 (23%)
Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
           CP+ C C  +  +  + C  + L  +P +     T+ L++  N++Q++  + F+   L +
Sbjct: 6   CPAACSCSNQASR--VICTRRELAEVPASIPVN-TRYLNLQENSIQVIRTDTFKH--LRH 60
Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
           L+ L L++  + +I+ GA +GL +L  ++L DN LT++P+  F+ +  LR+L L  NPI 
Sbjct: 61  LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 137 KIEKGAFQFVPGLVKLDMSE-SRLEHISPEAFTGAKS----------------------L 173
            I   AF  VP L +LD+ E  RLE+IS  AF G  +                      L
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRL 180
Query: 174 ESIKLNGNRLS-------------------HFPVRSVE---------------------- 192
           E ++L+GNRL                    H  V ++E                      
Sbjct: 181 EELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Query: 193 -------PLLKLMMIELHDNPWVCDCNMRSIKMWLADK--KNVPVQPACTGPERLSGKVF 243
                  PL +L  + L+ NPW C+C++  +  WL +    N      C  P  L G+  
Sbjct: 241 LPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYI 300
Query: 244 SDLHADDFACKPEIRM----DSRYVEAVSSENATVVCRVDSIPPAAISWYW-NGRLLLNN 298
            +L    F C   + +    D    E +++E   + CR  +    +++W   NG L+   
Sbjct: 301 GELDQSHFTCYAPVIVEPPTDLNVTEGMAAE---LKCRTGT-SMTSVNWLTPNGTLM--- 353
Query: 299 TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           T  S   RI V+  G      +L  TN    D+G++ C+  N AG   A+ TL V
Sbjct: 354 THGSYRVRISVLHDG------TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score =  119 bits (298), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 158/332 (47%), Gaps = 25/332 (7%)
Query: 32  MECRDKFLITIPEAPESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIG 88
           +E  D  L TIP      L+++  L +  N ++ +P  AF R  + +L++L L     + 
Sbjct: 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR--IPSLRRLDLGELKRLS 174
Query: 89  QIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG 148
            I  GA +GL+NL  ++L+   L  IP+LT   +  L +L+L+ N +S I  G+FQ +  
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREIPNLT--PLIKLDELDLSGNHLSAIRPGSFQGLMH 232
Query: 149 LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV 208
           L KL M +S+++ I   AF   +SL  I L  N L+  P     PL  L  I LH NPW 
Sbjct: 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292
Query: 209 CDCNMRSIKMWLADK--KNVPVQPACTGPERLSGKVFSDLHADDFACKPEIRM----DSR 262
           C+C++  +  W+ D    N      C  P  L G+   +L  + F C   + +    D  
Sbjct: 293 CNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLN 352
Query: 263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
             E +++E   + CR  S    ++SW      ++ + A+    RI V+  G      +L 
Sbjct: 353 VTEGMAAE---LKCRA-STSLTSVSWITPNGTVMTHGAYKV--RIAVLSDG------TLN 400
Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            TN    D+G + C+  N  G   A+ TL VT
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 1/202 (0%)
Query: 50  LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
           L + LD+S +N Q+   +     GL  L  L L RC + ++  G   GL  L  + L DN
Sbjct: 81  LLEQLDLS-DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 139
Query: 110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
            L ++P  TF+ +  L  L L  N IS + + AF+ +  L +L + ++R+ H+ P AF  
Sbjct: 140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQ 229
              L ++ L  N LS  P  ++ PL  L  + L+DNPWVCDC  R +  WL   +    +
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE 259
Query: 230 PACTGPERLSGKVFSDLHADDF 251
             C+ P+RL+G+    L A+D 
Sbjct: 260 VPCSLPQRLAGRDLKRLAANDL 281

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 105/202 (51%), Gaps = 1/202 (0%)
Query: 50  LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
           L + LD+S +N Q+   +     GL  L  L L RC + ++  G   GL  L  + L DN
Sbjct: 80  LLEQLDLS-DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN 138
Query: 110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
            L ++P  TF+ +  L  L L  N IS + + AF+ +  L +L + ++R+ H+ P AF  
Sbjct: 139 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 198
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQ 229
              L ++ L  N LS  P  ++ PL  L  + L+DNPWVCDC  R +  WL   +    +
Sbjct: 199 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSE 258
Query: 230 PACTGPERLSGKVFSDLHADDF 251
             C+ P+RL+G+    L A+D 
Sbjct: 259 VPCSLPQRLAGRDLKRLAANDL 280

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 155/337 (45%), Gaps = 30/337 (8%)
Query: 32  MECRDKFLITIPEAPESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCH-IG 88
           +E  D +L  IP      L+++  L +  N ++ +P  AF R    +L +L L     + 
Sbjct: 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP--SLMRLDLGELKKLE 185
Query: 89  QIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG 148
            I  GA +GL NL  ++L    +  +P+LT   +  L +L ++ N   +I  G+F  +  
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNIKDMPNLT--PLVGLEELEMSGNHFPEIRPGSFHGLSS 243
Query: 149 LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV 208
           L KL +  S++  I   AF G  SL  + L  N LS  P     PL  L+ + LH NPW 
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
Query: 209 CDCNMRSIKMWLADKKNVPVQPACTG----PERLSGKVFSDLHADDFACKPEIRMDS-RY 263
           CDC++  +  WL  ++ +P    C G    P  + G+   ++    F C     MD+ R 
Sbjct: 304 CDCDILWLAWWL--REYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRD 361
Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSS---YQRIFVIEQGEYERKSS 320
           +       A + CR    P +++ W     LL N T  S    + RI V+  G      +
Sbjct: 362 LNISEGRMAELKCRTP--PMSSVKW-----LLPNGTVLSHASRHPRISVLNDG------T 408
Query: 321 LVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
           L  ++   SD+G + C+  N AG ++A+  L V+  G
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 3/203 (1%)
Query: 50  LTQVLDMSGN-NLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD 108
           L + LD+S N  L+++    FR  GL +L  L L RC + ++  G   GL  L  + L D
Sbjct: 80  LLEQLDLSDNAQLRVVDPTTFR--GLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFT 168
           N L ++P  TF+ +  L  L L  N I  + + AF+ +  L +L + ++ +  + P AF 
Sbjct: 138 NNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFR 197
Query: 169 GAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPV 228
               L ++ L  N LS  P   + PL  L  + L+DNPWVCDC  R +  WL   +    
Sbjct: 198 DLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS 257
Query: 229 QPACTGPERLSGKVFSDLHADDF 251
           +  C  P+RL+G+    L A D 
Sbjct: 258 EVPCNLPQRLAGRDLKRLAASDL 280

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 134/310 (43%), Gaps = 78/310 (25%)
Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
           CP+ C C  +  +  + C  + L  +P +     T+ L++  N++Q++  + F+   L +
Sbjct: 6   CPAACSCSNQASR--VICTRRELAEVPASIPVN-TRYLNLQENSIQVIRTDTFKH--LRH 60
Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
           L+ L L++  + +I+ GA +GL +L  ++L DN LT++P+  F+ +  LR+L L  NPI 
Sbjct: 61  LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 137 KIEKGAFQFVPGLVKLDMSE-SRLEHISPEAFTGAKS----------------------L 173
            I   AF  VP L +LD+ E  RLE+IS  AF G  +                      L
Sbjct: 121 SIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRL 180
Query: 174 ESIKLNGNRLS-------------------HFPVRSVE---------------------- 192
           E ++L+GNRL                    H  V ++E                      
Sbjct: 181 EELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
Query: 193 -------PLLKLMMIELHDNPWVCDCNMRSIKMWLADK--KNVPVQPACTGPERLSGKVF 243
                  PL +L  + L+ NPW C+C++  +  WL +    N      C  P  L G+  
Sbjct: 241 LPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYI 300
Query: 244 SDLHADDFAC 253
            +L    F C
Sbjct: 301 GELDQSHFTC 310

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 143/318 (44%), Gaps = 29/318 (9%)
Query: 39  LITIPEAPESEL--TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIGQIDSGAL 95
           L +IP    S L    VL +   N+  +   +F+R  L  L+ L ++   ++  +    L
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKR--LYRLKVLEISHWPYLDTMTPNCL 221
Query: 96  DGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMS 155
            GL NL  + ++   LT++P L  + + +LR LNL+ NPIS IE      +  L ++ + 
Sbjct: 222 YGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280
Query: 156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRS 215
             +L  + P AF G   L  + ++GN+L+         +  L  + L  NP  CDC +  
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL-- 338
Query: 216 IKMWLADKK---NV-PVQPACTGPERLSGKVFSD----LHADDFACKPEIRMDSRYVEAV 267
             +W+  ++   N    QP C  PE + GK F D    L  + F C+     D +  +  
Sbjct: 339 --LWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVF 396
Query: 268 SSENATV--VCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTN 325
             E  TV  VCR D  PP AI W    + L+   +  S  R+ V   G  E +       
Sbjct: 397 VDEGHTVQFVCRADGDPPPAILWLSPRKHLV---SAKSNGRLTVFPDGTLEVRY------ 447
Query: 326 AQESDSGRFYCVAENRAG 343
           AQ  D+G + C+A N  G
Sbjct: 448 AQVQDNGTYLCIAANAGG 465

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 115/254 (45%), Gaps = 24/254 (9%)
Query: 22  ICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRR---------- 71
           +C     K  ++C  K L  IP    ++ T+ LD+  N L  LP +AF R          
Sbjct: 11  VCSCNNNKNSVDCSSKKLTAIPSNIPAD-TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN 69
Query: 72  --------AGLL----NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTF 119
                   AG+     NL+ L++    +  +  G  D L NL E+ L  N L S+P   F
Sbjct: 70  DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129
Query: 120 QSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLN 179
            S+  L  L+L  N +  + KG F  +  L +L +  ++L+ +   AF     L+++KL+
Sbjct: 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189
Query: 180 GNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCN-MRSIKMWLADKKNVPVQPACTGPERL 238
            N+L   P  + + L KL M++L +NPW C CN +  +  WL  K +  +    T     
Sbjct: 190 NNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEK 249
Query: 239 SGKVFSDLHADDFA 252
            GK   ++   D A
Sbjct: 250 GGKAVLEITEKDAA 263

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 75/148 (50%), Gaps = 1/148 (0%)
Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           L NL  L L    +  + +G  D LTNL E+ L +N L S+P   F  +  L  LNLA N
Sbjct: 84  LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP 193
            +  + KG F  +  L +LD+S ++L+ +    F     L+ ++L  N+L   P    + 
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203
Query: 194 LLKLMMIELHDNPWVCDC-NMRSIKMWL 220
           L  L  I LHDNPW C C  +R +  W+
Sbjct: 204 LTSLQYIWLHDNPWDCTCPGIRYLSEWI 231

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 99/210 (47%), Gaps = 4/210 (1%)
Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
           C +   C    GK+ ++C+ K L ++P    ++ T+ LD+    L  L    FR  GL  
Sbjct: 4   CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPAD-TEKLDLQSTGLATLSDATFR--GLTK 60
Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
           L  L L    +  + +G  D LT L  + L++N L S+P   F  +  L  L L  N + 
Sbjct: 61  LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
            +  G F  +  L +L ++ ++L+ I   AF    +L+++ L+ N+L   P  + + L K
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180
Query: 197 LMMIELHDNPWVCD-CNMRSIKMWLADKKN 225
           L  I L  N + C  C +  +  W+ +  N
Sbjct: 181 LQTITLFGNQFDCSRCEILYLSQWIRENSN 210

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 4/210 (1%)
Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
           C +   C    GK+ ++C+ K L ++P    ++ T+ LD+    L  L    FR  GL  
Sbjct: 4   CETVTGCTCNEGKKEVDCQGKSLDSVPSGIPAD-TEKLDLQSTGLATLSDATFR--GLTK 60
Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
           L  L L    +  + +G  D LT L  + L++N L S+P   F  +  L  L L  N + 
Sbjct: 61  LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK 120
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
            +  G F  +  L +L ++ ++L+ I   AF    +L+++ L+ N+L   P  + + L K
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK 180
Query: 197 LMMIELHDNPWVCD-CNMRSIKMWLADKKN 225
           L  I L  N + C  C    +  W+ +  N
Sbjct: 181 LQTITLFGNQFDCSRCETLYLSQWIRENSN 210

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 39/241 (16%)
Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
           CP+ C C        ++CR K L  IP      +T++  +  N ++++P           
Sbjct: 5   CPAACTC----SNNIVDCRGKGLTEIPTNLPETITEI-RLEQNTIKVIP----------- 48
Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
                           GA      L  IDLS+N ++ +    FQ +R L  L L  N I+
Sbjct: 49  ---------------PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
           ++ K  F+ +  L  L ++ +++  +  +AF    +L  + L  N+L      +  PL  
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 197 LMMIELHDNPWVCDCNMRSIKMWLADKKNV-PVQPA---CTGPERLSGKVFSDLHADDFA 252
           +  + L  NP++CDC+++    WLAD  +  P++ +   CT P RL+ K    + +  F 
Sbjct: 154 IQTMHLAQNPFICDCHLK----WLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFR 209
Query: 253 C 253
           C
Sbjct: 210 C 210

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 39/241 (16%)
Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
           CP+ C C        ++CR K L  IP      +T++  +  N ++++P           
Sbjct: 5   CPAACTC----SNNIVDCRGKGLTEIPTNLPETITEI-RLEQNTIKVIP----------- 48
Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
                           GA      L  IDLS+N ++ +    FQ +R L  L L  N I+
Sbjct: 49  ---------------PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
           ++ K  F+ +  L  L ++ +++  +  +AF    +L  + L  N+L      +  PL  
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 197 LMMIELHDNPWVCDCNMRSIKMWLADKKNV-PVQPA---CTGPERLSGKVFSDLHADDFA 252
           +  + L  NP++CDC+++    WLAD  +  P++ +   CT P RL+ K    + +  F 
Sbjct: 154 IQTMHLAQNPFICDCHLK----WLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFR 209
Query: 253 C 253
           C
Sbjct: 210 C 210

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 11/205 (5%)
Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
           CP+ C+C        + C  + L  +P++  S  T +LD+S NNL  L  E +    L N
Sbjct: 12  CPANCLC----ASNILSCSKQQLPNVPQSLPS-YTALLDLSHNNLSRLRAE-WTPTRLTN 65
Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
           L  L L+  H+  I S A   + NL  +DLS N L ++    F  ++ L  L L  N I 
Sbjct: 66  LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLES---IKLNGNRLSHFPVRSVEP 193
            +++ AF+ +  L KL +S++++     E       L     + L+ N+L   P+  ++ 
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185
Query: 194 LLKLMM--IELHDNPWVCDCNMRSI 216
           L   +   + LH+NP  CDC +  +
Sbjct: 186 LPAWVKNGLYLHNNPLECDCKLYQL 210

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 32/211 (15%)
Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
           CPS C C        +EC  +   ++P    ++ T  LD+  N+L+ LP           
Sbjct: 1   CPSRCSCSGTT----VECYSQGRTSVPTGIPAQ-TTYLDLETNSLKSLP----------- 44
Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
                          +G  D LT+L ++ L  N L S+P+  F  +  L  LNL+ N + 
Sbjct: 45  ---------------NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
            +  G F  +  L +L ++ ++L+ +    F     L+ ++L  N+L   P    + L  
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 197 LMMIELHDNPWVCDC-NMRSIKMWLADKKNV 226
           L  I LHDNPW C C  +R +  W+     V
Sbjct: 150 LQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 180

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 41/230 (17%)
Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
           CPS C C        ++CR K   ++P    +   Q+L +  N +  L    F    L+N
Sbjct: 13  CPSQCSCSGTT----VDCRSKRHASVPAGIPTN-AQILYLHDNQITKLEPGVFD--SLIN 65
Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
           L++L+L    +G +  G  D LT L  +DL  N LT +PS  F  +  L++L +  N ++
Sbjct: 66  LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125
Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
           ++ +G                RL H           L  + L+ N+L   P  + + L  
Sbjct: 126 ELPRGI--------------ERLTH-----------LTHLALDQNQLKSIPHGAFDRLSS 160
Query: 197 LMMIELHDNPWVCDC-NMRSIKMWLADKKNVPVQPACTGPERLSGKVFSD 245
           L    L  NPW C+C ++  ++ W+AD  ++ +        R  GK  +D
Sbjct: 161 LTHAYLFGNPWDCECRDIMYLRNWVADHTSIAM--------RWDGKAVND 202

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Query: 100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRL 159
           ++ E+ L  N  T +P     + + L  ++L+ N IS +   +F  +  L+ L +S +RL
Sbjct: 32  DVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 160 EHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMW 219
             I P  F G KSL  + L+GN +S  P  +   L  L  + +  NP  CDCNM+ +  W
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDW 150
Query: 220 LADKKNVPVQPACTGPERLSGKVFSDLHADDFAC 253
           +  +   P    C GP  ++ K+     +  F C
Sbjct: 151 VKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTC 184

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           L NL  L L    +  + +G  D LTNL E+ L +N L S+P   F  +  L  L L  N
Sbjct: 84  LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP 193
            +  + KG F  +  L +LD+  ++L+ +    F     L+ + LN N+L   P    + 
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDR 203
Query: 194 LLKLMMIELHDNPWVCDC-NMRSIKMWLA 221
           L  L  I L +NPW C C ++  +  W++
Sbjct: 204 LTSLTHIWLLNNPWDCACSDILYLSRWIS 232

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 25/176 (14%)
Query: 103 EIDLSDNLLTSIPSL-TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
           E+ L++N  T + +   F+ +  LR +N + N I+ IE+GAF+   G+ ++ ++ +RLE+
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN---------------- 205
           +  + F G +SL+++ L  NR++     S   L  + ++ L+DN                
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155
Query: 206 --------PWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFAC 253
                   P+ C+C +  +  WL  K+ V   P C  P  L      D+   DF C
Sbjct: 156 STLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTC 211

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 103 EIDLSDNLLTSIPS-LTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
           E+ L+DN L  I S   F  +  L  L L RN ++ IE  AF+    + +L + E++++ 
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLA 221
           IS + F G   L+++ L  N++S     S E L  L  + L  NP+ C+C++     WL 
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLR 152
Query: 222 DKKNVPVQPACTGPERLSGKVFSDLHADDFACKPE 256
            K        C  P ++      DL   +F C  E
Sbjct: 153 KKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE 187

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 67  EAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLR 126
           ++FR+  LLNL  L      I +ID+ A      + ++ +  N +  +P   FQ+V  L 
Sbjct: 66  DSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120
Query: 127 DLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
            L L RN +S + +G F   P L  L MS + LE I  + F    SL++++L+ NRL+H
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 67  EAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLR 126
           ++FR+  LLNL  L      I +ID+ A      + ++ +  N +  +P   FQ+V  L 
Sbjct: 72  DSFRQVELLNLNDL-----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126
Query: 127 DLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
            L L RN +S + +G F   P L  L MS + LE I  + F    SL++++L+ NRL+H
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 27/175 (15%)
Query: 47  ESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDL 106
           E+   +  D+S + +  L K  F  +   +L++L LA+  I +ID  A  GLT+L++++L
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVF--SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330
Query: 107 SDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEA 166
           S N L SI S  F++             + K+E            LD+S + +  +  ++
Sbjct: 331 SQNFLGSIDSRMFEN-------------LDKLEV-----------LDLSYNHIRALGDQS 366
Query: 167 FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
           F G  +L+ + L+ N+L   P    + L  L  I LH NPW C C  +  +  WL
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 421

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI 162
            ++L  N L S+P   F  +  L  L+L++N I  +  G F  +  L  L + E++L+ +
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 163 SPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
               F     L+ + L+ N+L   P    + L  L  I LH NPW C C  +  +  WL
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 150

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 32/204 (15%)
Query: 43  PEAPESELTQVLDMSGNNLQILPKEAFRRAGLL---NLQKLFLARCHIG--QIDS----- 92
           P+ P+   T +L +S N L       F  A L+    L +L L RC +   Q+D      
Sbjct: 27  PDLPKD--TTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 93  GALD--------------GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
           G LD               L  L  +D+S N LTS+P    + +  L++L L  N +  +
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
             G     P L KL ++ ++L  +      G ++L+++ L  N L   P       L L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LP 198
Query: 199 MIELHDNPWVCDCNMRSIKMWLAD 222
              LH NPW+C+C +   + WL D
Sbjct: 199 FAFLHGNPWLCNCEILYFRRWLQD 222

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 32/204 (15%)
Query: 43  PEAPESELTQVLDMSGNNLQILPKEAFRRAGLL---NLQKLFLARCHIG--QIDS----- 92
           P+ P+   T +L +S N L       F  A L+    L +L L RC +   Q+D      
Sbjct: 27  PDLPKD--TTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 93  GALD--------------GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
           G LD               L  L  +D+S N LTS+P    + +  L++L L  N +  +
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
             G     P L KL ++ ++L  +      G ++L+++ L  N L   P       L L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LP 198
Query: 199 MIELHDNPWVCDCNMRSIKMWLAD 222
              LH NPW+C+C +   + WL D
Sbjct: 199 FAFLHGNPWLCNCEILYFRRWLQD 222

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 128 LNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP 187
           L L  N I+K+E G F  +  L +L  + ++L  I    F     L  + LN N L   P
Sbjct: 38  LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 188 VRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWLADKKNVPVQPACTGPERLSGKVFSD 245
             + + L  L  I L++NPW C+C ++  ++ W+AD  ++ +        R  GK  +D
Sbjct: 98  RGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVM--------RWDGKAVND 148

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 32/204 (15%)
Query: 43  PEAPESELTQVLDMSGNNLQILPKEAFRRAGLL---NLQKLFLARCHIG--QIDS----- 92
           P+ P+   T +L +S N L       F  A L+    L +L L RC +   Q+D      
Sbjct: 27  PDLPKD--TTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 93  GALD--------------GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
           G LD               L  L  +D+S N LTS+P    + +  L++L L  N +  +
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
             G     P L KL ++ ++L  +      G ++L+++ L  N L   P       L L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LP 198
Query: 199 MIELHDNPWVCDCNMRSIKMWLAD 222
              LH NPW+C+C +   + WL D
Sbjct: 199 FAFLHGNPWLCNCEILYFRRWLQD 222

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 32/204 (15%)
Query: 43  PEAPESELTQVLDMSGNNLQILPKEAFRRAGLL---NLQKLFLARCHIG--QIDS----- 92
           P+ P+   T +L +S N L       F  A L+    L +L L RC +   Q+D      
Sbjct: 27  PDLPKD--TTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 93  GALD--------------GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
           G LD               L  L  +D+S N LTS+P    + +  L++L L  N +  +
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
             G     P L KL ++ ++L  +      G ++L+++ L  N L   P       L L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LP 198
Query: 199 MIELHDNPWVCDCNMRSIKMWLAD 222
              LH NPW+C+C +   + WL D
Sbjct: 199 FAFLHGNPWLCNCEILYFRRWLQD 222

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 87/204 (42%), Gaps = 32/204 (15%)
Query: 43  PEAPESELTQVLDMSGNNLQILPKEAFRRAGLL---NLQKLFLARCHIG--QIDS----- 92
           P+ P+   T +L +S N L       F  A L+    L +L L RC +   Q+D      
Sbjct: 28  PDLPKD--TTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 80
Query: 93  GALD--------------GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
           G LD               L  L  +D+S N LTS+P    + +  L++L L  N +  +
Sbjct: 81  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 140
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
             G     P L KL ++ + L  +      G ++L+++ L  N L   P       L L 
Sbjct: 141 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LP 199
Query: 199 MIELHDNPWVCDCNMRSIKMWLAD 222
              LH NPW+C+C +   + WL D
Sbjct: 200 FAFLHGNPWLCNCEILYFRRWLQD 223

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 87/204 (42%), Gaps = 32/204 (15%)
Query: 43  PEAPESELTQVLDMSGNNLQILPKEAFRRAGLL---NLQKLFLARCHIG--QIDS----- 92
           P+ P+   T +L +S N L       F  A L+    L +L L RC +   Q+D      
Sbjct: 27  PDLPKD--TTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 93  GALD--------------GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
           G LD               L  L  +D+S N LTS+P    + +  L++L L  N +  +
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
             G     P L KL ++ + L  +      G ++L+++ L  N L   P       L L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LP 198
Query: 199 MIELHDNPWVCDCNMRSIKMWLAD 222
              LH NPW+C+C +   + WL D
Sbjct: 199 FAFLHGNPWLCNCEILYFRRWLQD 222

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 87/204 (42%), Gaps = 32/204 (15%)
Query: 43  PEAPESELTQVLDMSGNNLQILPKEAFRRAGLL---NLQKLFLARCHIG--QIDS----- 92
           P+ P+   T +L +S N L       F  A L+    L +L L RC +   Q+D      
Sbjct: 27  PDLPKD--TTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL 79
Query: 93  GALD--------------GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
           G LD               L  L  +D+S N LTS+P    + +  L++L L  N +  +
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
             G     P L KL ++ + L  +      G ++L+++ L  N L   P       L L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LP 198
Query: 199 MIELHDNPWVCDCNMRSIKMWLAD 222
              LH NPW+C+C +   + WL D
Sbjct: 199 FAFLHGNPWLCNCEILYFRRWLQD 222

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Query: 89  QIDSGALDG--LTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV 146
           Q+ S  L G  L  L  +D+S N LTS+P    + +  L++L L  N +  +  G     
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 147 PGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
           P L KL ++ + L  +      G ++L+++ L  N L   P       L L    LH NP
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGNP 206
Query: 207 WVCDCNMRSIKMWLAD 222
           W+C+C +   + WL D
Sbjct: 207 WLCNCEILYFRRWLQD 222

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 101 LIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE 160
           L  +D+S N LTS+P    + +  L++L L  N +  +  G     P L KL ++ + L 
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 161 HISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWL 220
            +      G ++L+++ L  N L   P       L L    LH NPW+C+C +   + WL
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGNPWLCNCEILYFRRWL 220
Query: 221 AD 222
            D
Sbjct: 221 QD 222

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 101 LIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE 160
           L  +D+S N LTS+P    + +  L++L L  N +  +  G     P L KL ++ + L 
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 161 HISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWL 220
            +      G ++L+++ L  N L   P       L L    LH NPW+C+C +   + WL
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGNPWLCNCEILYFRRWL 220
Query: 221 AD 222
            D
Sbjct: 221 QD 222

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 6/172 (3%)
Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEIDLSDNL 110
           + LD+S N +  +        GL  L+ L     ++ Q+ +      L NLI +D+S   
Sbjct: 376 KYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISK-IEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
                +  F  +  L  L +A N   +      F  +  L  LD+S+ +LE +SP AF  
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
             SL+ + +  N+L   P    + L  L  I LH NPW C C  +  +  WL
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 544

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 104 IDLSDNLLTSIPS--LTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
           +D S   L S+P+   T   V +L D     N I+K+E G F  +  L +LD+  ++L  
Sbjct: 14  VDCSGKSLASVPTGIPTTTQVLYLYD-----NQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
           +    F     L  + LN N+L   P  + + L  L  I L +NPW C C ++  +  W+
Sbjct: 69  LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 128
Query: 221 A 221
           +
Sbjct: 129 S 129

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 104 IDLSDNLLTSIPSL--TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
           +D S   L S+P+   T   V +L D     N I+K+E G F  +  L +LD+  ++L  
Sbjct: 22  VDCSGKSLASVPTGIPTTTQVLYLYD-----NQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
           +    F     L  + LN N+L   P  + + L  L  I L +NPW C C ++  +  W+
Sbjct: 77  LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 136
Query: 221 A 221
           +
Sbjct: 137 S 137

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 104 IDLSDNLLTSIPSL--TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
           +D S   L S+P+   T   V +L D     N I+K+E G F  +  L +LD+  ++L  
Sbjct: 14  VDCSGKSLASVPTGIPTTTQVLYLYD-----NRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
           +    F     L  + LN N+L   P  + + L  L  I L +NPW C C ++  +  W+
Sbjct: 69  LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSRWI 128
Query: 221 A 221
           +
Sbjct: 129 S 129

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 53  VLDMSGNNL-QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
            LD+SGN   + + K  F       +Q L L+  +    + G+  G TN  + D      
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY----NMGSSFGHTNFKDPD------ 265
Query: 112 TSIPSLTFQSVRF--LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
               + TF+ +    ++  +L+++ I  + K  F     L +L ++++ +  I   AF G
Sbjct: 266 ----NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321
Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWL 220
              L+ + L+ N+L   P    + L  L  I LH NPW C C  +  +  WL
Sbjct: 322 LTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 373

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 41  TIPEAPESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
           TI +     L+ +  L ++GN +Q L   AF  +GL +LQKL     ++  +++  +  L
Sbjct: 67  TIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 99  TNLIEIDLSDNLLTS--IPSLTFQSVRFLRDLNLARNPISKIE----KGAFQFVPGLVKL 152
             L E++++ NL+ S  +P   F ++  L  L+L+ N I  I     +   Q     + L
Sbjct: 125 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 183
Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC- 211
           D+S + +  I P AF   + L+ + L+ N+L   P    + L  L  I LH NPW C C 
Sbjct: 184 DLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Query: 212 NMRSIKMWL 220
            +  +  WL
Sbjct: 243 RIDYLSRWL 251

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 41  TIPEAPESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
           TI +     L+ +  L ++GN +Q L   AF  +GL +LQKL     ++  +++  +  L
Sbjct: 68  TIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASLENFPIGHL 125
Query: 99  TNLIEIDLSDNLLTS--IPSLTFQSVRFLRDLNLARNPISKIE----KGAFQFVPGLVKL 152
             L E++++ NL+ S  +P   F ++  L  L+L+ N I  I     +   Q     + L
Sbjct: 126 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 184
Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC- 211
           D+S + +  I P AF   + L+ + L+ N+L   P    + L  L  I LH NPW C C 
Sbjct: 185 DLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
Query: 212 NMRSIKMWL 220
            +  +  WL
Sbjct: 244 RIDYLSRWL 252

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 41  TIPEAPESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
           TI +     L+ +  L ++GN +Q L   AF  +GL +LQKL     ++  +++  +  L
Sbjct: 67  TIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 99  TNLIEIDLSDNLLTS--IPSLTFQSVRFLRDLNLARNPISKIE----KGAFQFVPGLVKL 152
             L E++++ NL+ S  +P   F ++  L  L+L+ N I  I     +   Q     + L
Sbjct: 125 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 183
Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC- 211
           D+S + +  I P AF   + L+ + L+ N+L   P    + L  L  I LH NPW C C 
Sbjct: 184 DLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Query: 212 NMRSIKMWL 220
            +  +  WL
Sbjct: 243 RIDYLSRWL 251

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 41  TIPEAPESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
           TI +     L+ +  L ++GN +Q L   AF  +GL +LQKL     ++  +++  +  L
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 99  TNLIEIDLSDNLLTS--IPSLTFQSVRFLRDLNLARNPISKIE----KGAFQFVPGLVKL 152
             L E++++ NL+ S  +P   F ++  L  L+L+ N I  I     +   Q     + L
Sbjct: 124 KTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC- 211
           D+S + +  I P AF   + L+ + L+ N+L   P    + L  L  I LH NPW C C 
Sbjct: 183 DLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241
Query: 212 NMRSIKMWL 220
            +  +  WL
Sbjct: 242 RIDYLSRWL 250

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 33/199 (16%)
Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           QVLD+S   +Q +   A++   L +L  L L    I  +  GA  GL++L ++   +  L
Sbjct: 57  QVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNL 114
Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIE-KGAFQFVPGLVKLDMSESRLE---------- 160
            S+ +     ++ L++LN+A N I   +    F  +  L  LD+S ++++          
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 174
Query: 161 ------------------HISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIEL 202
                              I P AF   + L+ + L+ N+L   P    + L  L  I L
Sbjct: 175 HQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWL 233
Query: 203 HDNPWVCDC-NMRSIKMWL 220
           H NPW C C  +  +  WL
Sbjct: 234 HTNPWDCSCPRIDYLSRWL 252

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 128 LNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP 187
           L+L  N I+K+E G F  +  L  L+++ ++L  +    F     L  + L+ N+L   P
Sbjct: 45  LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIP 104
Query: 188 VRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWLADKKNV 226
           +   + L  L  I L +NPW C+C ++  +K W+    ++
Sbjct: 105 MGVFDNLKSLTHIYLFNNPWDCECSDILYLKNWIVQHASI 144

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 14/82 (17%)
Query: 276 CRVD----SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS 331
           CR+D     +P   +SWY NGR + ++       ++ V E+G +    SL+    + SD+
Sbjct: 23  CRMDFKVSGLPAPDVSWYLNGRTVQSD----DLHKMIVSEKGLH----SLIFEVVRASDA 74
Query: 332 GRFYCVAENRAGIADANFTLQV 353
           G + CVA+NRAG  +A FT+Q+
Sbjct: 75  GAYACVAKNRAG--EATFTVQL 94

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 112/289 (38%), Gaps = 83/289 (28%)
Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
           CPS C C    G + + C  K L ++P    S  T+ L++  N LQ LP   F +  L  
Sbjct: 1   CPSRCSC---SGTE-IRCNSKGLTSVPTGIPSSATR-LELESNKLQSLPHGVFDK--LTQ 53
Query: 77  LQKLFLA------RCHIGQIDSGA-----LD--------------GLTNLIEIDLSDNLL 111
           L KL L+      +    Q D G      LD              GL  L  +D   + L
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 113
Query: 112 TSIPSLT-FQSVRFLRDLNLAR-----------NPISKIE-----KGAFQ--FVP----- 147
             +   + F S+R L  L+++            N +S +E       +FQ  F+P     
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173
Query: 148 --GLVKLDMSESRLEHISPEAFTGAKSLESIKLNGN---RLSHFPVRSVEPLL------- 195
              L  LD+S+ +LE +SP AF    SL+ + ++ N    L  FP + +  L        
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 196 ---------------KLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQ 229
                           L  + L  N + C C  +S   W+ D++ + V+
Sbjct: 234 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 282

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 91  DSGALDGL--TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG 148
           D     GL  +++  +DLS   + S+ S  F++++ L+ LNLA N I+KI   AF  +  
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315
Query: 149 LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
           L  L++S + L  +    F G   +  I L  N ++    ++ + L KL  ++L DN 
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 18/191 (9%)
Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
           C    ICK   G          L +IP    +E  + LD+S N +  +     +R   +N
Sbjct: 30  CDRNGICKGSSGS---------LNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRC--VN 77
Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
           LQ L L    I  I+  +   L +L  +DLS N L+++ S  F+ +  L  LNL  NP  
Sbjct: 78  LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 137 KIEKGAFQFVPGLVKLDM----SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVE 192
            +  G       L KL +    +      I  + F G   LE ++++ + L  +  +S++
Sbjct: 138 TL--GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195
Query: 193 PLLKLMMIELH 203
            +  +  + LH
Sbjct: 196 SIQNVSHLILH 206

>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant Length = 129

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 178 LNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADK-KNVPVQP-ACTGP 235
           L GN L+  P  + + L +L    L  NPW CDC++  +++WL D+ +  P +   C  P
Sbjct: 37  LTGNNLTSVPPGAFDHLPQLRTAHLGANPWRCDCSLTYLRLWLEDRPERAPYRDLRCVAP 96
Query: 236 ERLSGKVFSDLHADDF--ACKP 255
             L G++   L  D+   AC P
Sbjct: 97  PALRGRLLPYLAEDELRAACAP 118

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 9/173 (5%)
Query: 35  RDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGA 94
           R +   +IP    + + + LD+S N +  +     R     NLQ L L    I  I+  A
Sbjct: 13  RSRSFTSIPSGLTAAM-KSLDLSFNKITYIGHGDLRACA--NLQVLILKSSRINTIEGDA 69
Query: 95  LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
              L +L  +DLSDN L+S+ S  F  +  L+ LNL  NP   +  G     P L  L  
Sbjct: 70  FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL--GVTSLFPNLTNLQT 127
Query: 155 ----SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELH 203
               +      I    F G  SL  +++    L ++  +S++ +  +  + LH
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 9/173 (5%)
Query: 35  RDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGA 94
           R +   +IP    + + + LD+S N +  +     R     NLQ L L    I  I+  A
Sbjct: 39  RSRSFTSIPSGLTAAM-KSLDLSFNKITYIGHGDLRACA--NLQVLILKSSRINTIEGDA 95
Query: 95  LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
              L +L  +DLSDN L+S+ S  F  +  L+ LNL  NP   +  G     P L  L  
Sbjct: 96  FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL--GVTSLFPNLTNLQT 153
Query: 155 ----SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELH 203
               +      I    F G  SL  +++    L ++  +S++ +  +  + LH
Sbjct: 154 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 206

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 18/191 (9%)
Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
           C    ICK   G          L +IP    +E  + LD+S N +  +     +R   +N
Sbjct: 4   CDRNGICKGSSGS---------LNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRC--VN 51
Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
           LQ L L    I  I+  +   L +L  +DLS N L+++ S  F+ +  L  LNL  NP  
Sbjct: 52  LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 137 KIEKGAFQFVPGLVKLDM----SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVE 192
            +  G       L KL +    +      I  + F G   LE ++++ + L  +  +S++
Sbjct: 112 TL--GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 169
Query: 193 PLLKLMMIELH 203
            +  +  + LH
Sbjct: 170 SIQNVSHLILH 180

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI 310
           +  +PE RMD + +   ++      C     P  +ISW  NGR       F    RI  I
Sbjct: 121 YWTRPE-RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGR------EFRGEHRIGGI 173
Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGG 366
           +     ++ SLV+ +   SD G + CV EN+ G     +TL V  R    P L  G
Sbjct: 174 KL--RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAG 227

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 81  FLARCHIGQIDSGALDGLTNLIE--------IDLSDNLLTSIPSLTFQSVRFLRDLNLAR 132
           F  +CH+  +    L GL  + +        +DL +N +T I    F++++ L  L L  
Sbjct: 27  FRCQCHLRVVQCSDL-GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 133 NPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVE 192
           N ISKI  GAF  +  L +L +S+++L+ + PE     K+L+ ++++ N ++        
Sbjct: 86  NKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKM--PKTLQELRVHENEITKVRKSVFN 142
Query: 193 PLLKLMMIELHDNPW 207
            L +++++EL  NP 
Sbjct: 143 GLNQMIVVELGTNPL 157

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 81  FLARCHIGQIDSGALDGLTNLIE--------IDLSDNLLTSIPSLTFQSVRFLRDLNLAR 132
           F  +CH+  +    L GL  + +        +DL +N +T I    F++++ L  L L  
Sbjct: 27  FRCQCHLRVVQCSDL-GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 133 NPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVE 192
           N ISKI  GAF  +  L +L +S+++L+ + PE     K+L+ ++++ N ++        
Sbjct: 86  NKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKM--PKTLQELRVHENEITKVRKSVFN 142
Query: 193 PLLKLMMIELHDNPW 207
            L +++++EL  NP 
Sbjct: 143 GLNQMIVVELGTNPL 157

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI 310
           +  +PE RMD + +   ++      C     P  +ISW  NGR       F    RI  I
Sbjct: 13  YWTRPE-RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGR------EFRGEHRIGGI 65
Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLGGG 366
           +     ++ SLV+ +   SD G + CV EN+ G     +TL V  R    P L  G
Sbjct: 66  KL--RHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAG 119

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 2/132 (1%)
Query: 90  IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
           I    LD L  L     +   LT IP+     +R L  L L  N I ++    F  +  L
Sbjct: 114 ITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENL 172
Query: 150 VKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC 209
             ++   ++L  +    F     L+ + L  N+L   P    + L  L  I LH NPW C
Sbjct: 173 ESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 232
Query: 210 DC-NMRSIKMWL 220
            C  +  +  WL
Sbjct: 233 SCPRIDYLSRWL 244

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 255 PEIRMDSRYVEAVSS--ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           P ++     V A ++  ++ T+VC  D  P   +SW  +G  + N       + IF    
Sbjct: 195 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEE-DDEKHIF---- 249
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
              +  S L + N  ++D   + C+AEN+AG  DA+  L+V
Sbjct: 250 --SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain Length = 130

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 178 LNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADK-KNVPVQP-ACTGP 235
           L GN L+  P   ++ L  L    L  NPW CDC +  ++ WLA + +  P +   C  P
Sbjct: 38  LTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAP 97
Query: 236 ERLSGKVFSDLHADDF--ACKP 255
             L G++   L  D+   AC P
Sbjct: 98  PALRGRLLPYLAEDELRAACAP 119

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 128 LNLARNPISKIEKGAFQFVPGLVK-LDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF 186
           LNL+ N ++      F+ +P  VK LD+  +R+  I P+  T  ++L+ + +  N+L   
Sbjct: 433 LNLSSNMLTG---SVFRCLPPKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSV 488
Query: 187 PVRSVEPLLKLMMIELHDNPWVCDC-NMRSIKMWLADKKNV 226
           P    + L  L  I LHDNPW C C  +R +  W+     V
Sbjct: 489 PDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV 529

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 84/219 (38%), Gaps = 33/219 (15%)
Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEIDLSDNL 110
           + LD+S N +  +        GL  L+ L     ++ Q+ +      L NLI +D+S   
Sbjct: 400 KYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 456
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISK-IEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
                +  F  +  L  L +A N   +      F  +  L  LD+S+ +LE +SP AF  
Sbjct: 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516
Query: 170 AKSLESIKLNGNR---LSHFPVRSVEPLL----------------------KLMMIELHD 204
             SL+ + ++ N    L  FP + +  L                        L  + L  
Sbjct: 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576
Query: 205 NPWVCDCNMRSIKMWLADKKNVPVQP---ACTGPERLSG 240
           N + C C  +S   W+ D++ + V+     C  P    G
Sbjct: 577 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 615

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 255 PEIRMDSRYVEAVS--SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           P I M  +   A +   E  T  CR    P  AISW+ NG+L+  N  +        I +
Sbjct: 3   PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--------ILK 54
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           G     + L + N   SD G + C A N+AG  +    LQV
Sbjct: 55  GS---NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 92

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           L NL +L L    +  I  G L  LTNL ++DL++N ++++  L+   +  L +L L  N
Sbjct: 220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 275
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVE 192
            IS I   A   +  L  L+++E++LE ISP   +  K+L  + L  N +S   PV S+ 
Sbjct: 276 QISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 331
Query: 193 PLLKLMM 199
            L +L  
Sbjct: 332 KLQRLFF 338

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           L NL +L L    +  I  G L  LTNL ++DL++N ++++  L+   +  L +L L  N
Sbjct: 219 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 274
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVE 192
            IS I   A   +  L  L+++E++LE ISP   +  K+L  + L  N +S   PV S+ 
Sbjct: 275 QISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 330
Query: 193 PLLKLMM 199
            L +L  
Sbjct: 331 KLQRLFF 337

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 84/219 (38%), Gaps = 33/219 (15%)
Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEIDLSDNL 110
           + LD+S N +  +        GL  L+ L     ++ Q+ +      L NLI +D+S   
Sbjct: 376 KYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISK-IEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
                +  F  +  L  L +A N   +      F  +  L  LD+S+ +LE +SP AF  
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 170 AKSLESIKLNGNR---LSHFPVRSVEPLL----------------------KLMMIELHD 204
             SL+ + ++ N    L  FP + +  L                        L  + L  
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
Query: 205 NPWVCDCNMRSIKMWLADKKNVPVQP---ACTGPERLSG 240
           N + C C  +S   W+ D++ + V+     C  P    G
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 591

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           L NL +L L    +  I  G L  LTNL ++DL++N ++++  L+   +  L +L L  N
Sbjct: 215 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 270
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVE 192
            IS I   A   +  L  L+++E++LE ISP   +  K+L  + L  N +S   PV S+ 
Sbjct: 271 QISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 326
Query: 193 PLLKLMM 199
            L +L  
Sbjct: 327 KLQRLFF 333

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           L NL +L L    +  I  G L  LTNL ++DL++N ++++  L+   +  L +L L  N
Sbjct: 216 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 271
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVE 192
            IS I   A   +  L  L+++E++LE ISP   +  K+L  + L  N +S   PV S+ 
Sbjct: 272 QISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 327
Query: 193 PLLKLMM 199
            L +L  
Sbjct: 328 KLQRLFF 334

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           L NL +L L    +  I  G L  LTNL ++DL++N ++++  L+   +  L +L L  N
Sbjct: 216 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 271
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVE 192
            IS I   A   +  L  L+++E++LE ISP   +  K+L  + L  N +S   PV S+ 
Sbjct: 272 QISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 327
Query: 193 PLLKLMM 199
            L +L  
Sbjct: 328 KLQRLFF 334

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           L NL +L L    +  I  G L  LTNL ++DL++N ++++  L+   +  L +L L  N
Sbjct: 215 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 270
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVE 192
            IS I   A   +  L  L+++E++LE ISP   +  K+L  + L  N +S   PV S+ 
Sbjct: 271 QISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 326
Query: 193 PLLKLMM 199
            L +L  
Sbjct: 327 KLQRLFF 333

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           L NL +L L    +  I  G L  LTNL ++DL++N ++++  L+   +  L +L L  N
Sbjct: 216 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGAN 271
Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVE 192
            IS I   A   +  L  L+++E++LE ISP   +  K+L  + L  N +S   PV S+ 
Sbjct: 272 QISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLT 327
Query: 193 PLLKLMM 199
            L +L  
Sbjct: 328 KLQRLFF 334

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 24/108 (22%)
Query: 255 PEIRMDSRYVEAVS--SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           P +R     + A +  S++ T+ C  D  P   ++W  +G                 IEQ
Sbjct: 12  PSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGE---------------PIEQ 56
Query: 313 GEYERK-------SSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
            + E K       S L++    +SD   + C+AEN+AG  DA   L+V
Sbjct: 57  EDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAENKAGEQDATIHLKV 104

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 255 PEIRMDSRYVEAVSS--ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           P I M  +   A +   E  T  CR    P  AISW+ NG+L+  N  +        I +
Sbjct: 97  PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--------ILK 148
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           G     + L + N   SD G + C A N+AG  +    LQV
Sbjct: 149 GS---NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 54  LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL------TNLIEIDLS 107
           LD+S N L+      F+  G     KLF    +  Q++    + L      T++  + L+
Sbjct: 176 LDLSSNPLKEFSPGCFQTIG-----KLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 108 DNLLTSIPSLTFQSVRF--LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPE 165
           +N L +    TF  +++  L  L+L+ N +  +  G+F ++P L  L +  + ++ +SP 
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 166 AFTGAKSLESIKL 178
           +F G  +L  + L
Sbjct: 291 SFYGLSNLRYLSL 303

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
Query: 262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSL 321
            +VEA   E  T+ C+VD  P   I+WY     L +  A+    +  V         +SL
Sbjct: 13  EHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNV---------ASL 63
Query: 322 VLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
           V+     SD G + C AEN  G   ++  L +  R
Sbjct: 64  VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKER 98

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 255 PEIRMDSRYVEAVSS--ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           P I M  +   A +   E  T  CR    P  AISW+ NG+L+  N  +        I +
Sbjct: 193 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY--------ILK 244
Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           G     + L + N   SD G + C A N+AG  +    LQV
Sbjct: 245 GS---NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 53  VLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL-- 110
           +LD+S NNL ++  ++F  A L  L+  FL   +I  + S +L GL N+  ++L  +   
Sbjct: 257 MLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 314
Query: 111 ----LTSIPSL---TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES--RLEH 161
               L S+P +   +FQ ++ L  LN+  N I  I+   F  +  L  L +S S   L  
Sbjct: 315 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 374
Query: 162 ISPEAFTGAKS--LESIKLNGNRLS 184
           ++ E F       L  + L  N++S
Sbjct: 375 LTNETFVSLAHSPLHILNLTKNKIS 399

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 53  VLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL-- 110
           +LD+S NNL ++  ++F  A L  L+  FL   +I  + S +L GL N+  ++L  +   
Sbjct: 262 MLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 319
Query: 111 ----LTSIPSL---TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES--RLEH 161
               L S+P +   +FQ ++ L  LN+  N I  I+   F  +  L  L +S S   L  
Sbjct: 320 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 379
Query: 162 ISPEAFTGAKS--LESIKLNGNRLS 184
           ++ E F       L  + L  N++S
Sbjct: 380 LTNETFVSLAHSPLHILNLTKNKIS 404

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 53  VLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL-- 110
           +LD+S NNL ++  ++F  A L  L+  FL   +I  + S +L GL N+  ++L  +   
Sbjct: 252 MLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Query: 111 ----LTSIPSL---TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES--RLEH 161
               L S+P +   +FQ ++ L  LN+  N I  I+   F  +  L  L +S S   L  
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369
Query: 162 ISPEAFTGAKS--LESIKLNGNRLS 184
           ++ E F       L  + L  N++S
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKIS 394

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	600
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-29
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-77
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-69
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-43
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-33
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-56
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-29
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-48
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-47
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-46
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-42
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-38
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-22
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-37
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-37
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-34
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-35
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-31
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-35
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-28
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-33
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-27
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-29
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-28
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-25
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-20
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-17
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-11
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	8e-17
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	7e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-15
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-06
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-15
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-12
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-15
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-15
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-15
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	4e-15
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	6e-15
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	7e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	6e-15
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	6e-15
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-15
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	8e-14
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-10
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	8e-15
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-07
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	8e-15
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-14
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	9e-12
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-14
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-14
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-13
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-14
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-14
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-12
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-12
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-06
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-14
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-10
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-10
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-09
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-14
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-14
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-12
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-14
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-09
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-14
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	5e-14
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	8e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-10
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-14
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-12
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	9e-09
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-06
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	6e-14
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-13
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	7e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-12
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-13
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-13
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-12
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-13
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-10
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-07
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-13
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-13
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-11
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-08
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-11
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-13
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-13
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-08
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-13
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-11
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-13
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	8e-13
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-10
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-13
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	4e-13
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-13
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-12
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-13
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-06
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-13
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	8e-12
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	7e-11
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-13
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-08
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	8e-08
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	5e-13
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	5e-13
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	5e-13
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	6e-13
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-11
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-06
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	6e-13
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-11
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	6e-13
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-13
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-10
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-09
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-06
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	7e-13
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-13
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-07
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-12
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-12
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	5e-10
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-09
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	1e-12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-06
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-07
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-06
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-12
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-11
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-12
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-09
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-07
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-06
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-12
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	8e-11
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-12
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-12
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-11
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-10
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-12
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-10
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-12
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	3e-12
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-12
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-10
1he7_A	126	High affinity nerve growth factor receptor; transf	6e-12
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	7e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	9e-12
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-11
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	1e-11
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	7e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-11
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-08
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	8e-08
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-11
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-08
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-11
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-08
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-08
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-07
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-11
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	3e-11
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-11
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-09
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-06
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	9e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-07
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-11
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	5e-11
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-04
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	8e-11
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	9e-11
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-09
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	9e-11
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-10
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-08
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-10
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-10
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-10
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-10
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	5e-06
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-10
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-10
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	8e-09
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-10
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-10
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-06
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	8e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-10
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-10
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-09
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	3e-10
2ens_A	96	Advanced glycosylation END product-specific recept	3e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-09
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-09
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	5e-10
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	6e-10
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-05
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	6e-10
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-09
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-09
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-09
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-07
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-09
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	5e-08
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-09
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-09
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-09
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-04
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	3e-09
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	9e-08
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-09
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-06
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	4e-09
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	5e-09
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	6e-09
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	6e-09
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	7e-09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-08
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-07
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-08
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-05
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-08
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-08
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-08
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	9e-07
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-08
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-08
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-08
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-08
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	9e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-08
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	6e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	8e-08
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-07
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-07
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	7e-06
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	3e-07
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	5e-07
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-06
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	6e-07
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	6e-07
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	7e-07
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	8e-07
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	1e-06
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-06
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	6e-05
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-06
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	9e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	2e-06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	4e-06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	3e-06
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-06
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	6e-06
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	9e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	3e-05
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	4e-05
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	1e-04
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	2e-04
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	5e-05
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	6e-05
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	7e-05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	7e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	8e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	1e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-04
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	4e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	6e-04
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	7e-04

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  275 bits (706), Expect = 9e-88
 Identities = 81/353 (22%), Positives = 133/353 (37%), Gaps = 35/353 (9%)

Query: 13  SVSSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRR 71
           SV SCP+ C+C        + C  + L  +P++ P    T +LD+S NNL  L  E    
Sbjct: 8   SVVSCPANCLC----ASNILSCSKQQLPNVPQSLPSY--TALLDLSHNNLSRLRAEWTP- 60

Query: 72  AGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLA 131
             L NL  L L+  H+  I S A   + NL  +DLS N L ++    F  ++ L  L L 
Sbjct: 61  TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120

Query: 132 RNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA---KSLESIKLNGNRLSHFPV 188
            N I  +++ AF+ +  L KL +S++++     E          L  + L+ N+L   P+
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180

Query: 189 RSVEPL--LKLMMIELHDNPWVCDCNMRSIKMWLADKK-----NVPVQPACTGPERLSGK 241
             ++ L       + LH+NP  CDC +  +      ++     +      C   ++L   
Sbjct: 181 TDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNI 240

Query: 242 VFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAF 301
                  D F C           EA   +  T+ C         +    +   +L+    
Sbjct: 241 ----FSLDFFNCSEYK---ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLS---- 289

Query: 302 SSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                   +  G       L     Q  D G + C A         +  L+V 
Sbjct: 290 QGSNGSVSVRNG------DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVY 336

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  262 bits (671), Expect = 2e-81
 Identities = 82/307 (26%), Positives = 137/307 (44%), Gaps = 18/307 (5%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIGQIDSGALDGLTNLIEIDLSDNL 110
           + L +  N ++ +P  AF    + +L +L L     +  I  GA +GL NL  ++L    
Sbjct: 150 RELWLRNNPIESIPSYAFN--RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
           +  +P      +  L +L ++ N   +I  G+F  +  L KL +  S++  I   AF G 
Sbjct: 208 IKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265

Query: 171 KSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKK--NVPV 228
            SL  + L  N LS  P     PL  L+ + LH NPW CDC++  +  WL +    N   
Sbjct: 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTC 325

Query: 229 QPACTGPERLSGKVFSDLHADDFAC-KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAIS 287
              C  P  + G+   ++    F C  P I    R +       A + CR    P +++ 
Sbjct: 326 CGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVK 383

Query: 288 WYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADA 347
           W      +L++   S + RI V+  G      +L  ++   SD+G + C+  N AG ++A
Sbjct: 384 WLLPNGTVLSHA--SRHPRISVLNDG------TLNFSHVLLSDTGVYTCMVTNVAGNSNA 435

Query: 348 NFTLQVT 354
           +  L V+
Sbjct: 436 SAYLNVS 442

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  120 bits (303), Expect = 2e-29
 Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 32/205 (15%)

Query: 3   LVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNL 61
              +         +CPS C C  +     + C  + L  +P+  P +  T+ L++  NN+
Sbjct: 32  CAAIAAAASAGPQNCPSVCSCSNQF--SKVVCTRRGLSEVPQGIPSN--TRYLNLMENNI 87

Query: 62  QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQS 121
           Q++  + FR                           L +L  + L  N +  I    F  
Sbjct: 88  QMIQADTFR--------------------------HLHHLEVLQLGRNSIRQIEVGAFNG 121

Query: 122 VRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKL-NG 180
           +  L  L L  N ++ I  GAF+++  L +L +  + +E I   AF    SL  + L   
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 181 NRLSHFPVRSVEPLLKLMMIELHDN 205
            +L +    + E L  L  + L   
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMC 206

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 3/107 (2%)

Query: 100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRL 159
              ++  +   L+ +P     +    R LNL  N I  I+   F+ +  L  L +  + +
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPSN---TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 160 EHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
             I   AF G  SL +++L  N L+  P  + E L KL  + L +NP
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  250 bits (639), Expect = 8e-77
 Identities = 88/307 (28%), Positives = 139/307 (45%), Gaps = 17/307 (5%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIGQIDSGALDGLTNLIEIDLSDNL 110
           + L +  N ++ +P  AF    + +L++L L     +  I  GA +GL+NL  ++L+   
Sbjct: 139 KELWLRNNPIESIPSYAFN--RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
           L  IP      +  L +L+L+ N +S I  G+FQ +  L KL M +S+++ I   AF   
Sbjct: 197 LREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254

Query: 171 KSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKK--NVPV 228
           +SL  I L  N L+  P     PL  L  I LH NPW C+C++  +  W+ D    N   
Sbjct: 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTAC 314

Query: 229 QPACTGPERLSGKVFSDLHADDFAC-KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAIS 287
              C  P  L G+   +L  + F C  P I      +       A + CR  +    ++S
Sbjct: 315 CARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVS 373

Query: 288 WYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADA 347
           W      ++ +   +   RI V+  G      +L  TN    D+G + C+  N  G   A
Sbjct: 374 WITPNGTVMTHG--AYKVRIAVLSDG------TLNFTNVTVQDTGMYTCMVSNSVGNTTA 425

Query: 348 NFTLQVT 354
           + TL VT
Sbjct: 426 SATLNVT 432

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  117 bits (295), Expect = 2e-28
 Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 32/205 (15%)

Query: 3   LVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNL 61
           L++       S  +CPS C C  +     + C  K L  +P+    +  T++L++  N +
Sbjct: 21  LLMGCVAETGSAQTCPSVCSCSNQF--SKVICVRKNLREVPDGISTN--TRLLNLHENQI 76

Query: 62  QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQS 121
           QI+   +F+                           L +L  + LS N + +I    F  
Sbjct: 77  QIIKVNSFK--------------------------HLRHLEILQLSRNHIRTIEIGAFNG 110

Query: 122 VRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKL-NG 180
           +  L  L L  N ++ I  GAF ++  L +L +  + +E I   AF    SL  + L   
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 181 NRLSHFPVRSVEPLLKLMMIELHDN 205
            RLS+    + E L  L  + L   
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMC 195

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  231 bits (592), Expect = 1e-69
 Identities = 85/333 (25%), Positives = 128/333 (38%), Gaps = 41/333 (12%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLT------------ 99
           + L +   NL  +P EA   + L  L  L L   +I  I   +   L             
Sbjct: 155 EQLTLEKCNLTSIPTEAL--SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 100 ------------NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVP 147
                       NL  + ++   LT++P L  + + +LR LNL+ NPIS IE      + 
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272

Query: 148 GLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW 207
            L ++ +   +L  + P AF G   L  + ++GN+L+         +  L  + L  NP 
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

Query: 208 VCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLH----ADDFACKPEIRMDSR- 262
            CDC +  +            QP C  PE + GK F D       + F C+     D + 
Sbjct: 333 ACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKA 392

Query: 263 -YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSL 321
             V          VCR D  PP AI W    + L++     S  R+ V   G      +L
Sbjct: 393 QQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSA---KSNGRLTVFPDG------TL 443

Query: 322 VLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            +  AQ  D+G + C+A N  G       L V 
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  159 bits (404), Expect = 6e-43
 Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 7/193 (3%)

Query: 15  SSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAG 73
           + CP  C C  +   + + C  K  + +PE  P    T++LD+  N ++ L ++ F  A 
Sbjct: 1   TGCPPRCECSAQD--RAVLCHRKRFVAVPEGIPTE--TRLLDLGKNRIKTLNQDEF--AS 54

Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
             +L++L L    +  ++ GA + L NL  + L  N L  IP   F  +  L  L+++ N
Sbjct: 55  FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP 193
            I  +    FQ +  L  L++ ++ L +IS  AF+G  SLE + L    L+  P  ++  
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174

Query: 194 LLKLMMIELHDNP 206
           L  L+++ L    
Sbjct: 175 LHGLIVLRLRHLN 187

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  133 bits (336), Expect = 1e-33
 Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 4/156 (2%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             LD+S N + IL    F+   L NL+ L +    +  I   A  GL +L ++ L    L
Sbjct: 107 TKLDISENKIVILLDYMFQ--DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES-RLEHISPEAFTGA 170
           TSIP+     +  L  L L    I+ I   +F+ +  L  L++S    L+ ++P    G 
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG- 223

Query: 171 KSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
            +L S+ +    L+  P  +V  L+ L  + L  NP
Sbjct: 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  191 bits (487), Expect = 1e-56
 Identities = 68/203 (33%), Positives = 104/203 (51%), Gaps = 3/203 (1%)

Query: 52  QVLDMSGNN-LQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
           + LD+S N  L+ +    F   GL  L  L L RC + ++  G   GL  L  + L DN 
Sbjct: 83  EQLDLSDNAQLRSVDPATFH--GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA 140

Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
           L ++P  TF+ +  L  L L  N IS + + AF+ +  L +L + ++R+ H+ P AF   
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 171 KSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQP 230
             L ++ L  N LS  P  ++ PL  L  + L+DNPWVCDC  R +  WL   +    + 
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEV 260

Query: 231 ACTGPERLSGKVFSDLHADDFAC 253
            C+ P+RL+G+    L A+D   
Sbjct: 261 PCSLPQRLAGRDLKRLAANDLQG 283

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  115 bits (291), Expect = 5e-29
 Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 31/191 (16%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLL 75
           CP  C+C  +       C  + L  +P   P +  +Q + + GN +  +P  +FR     
Sbjct: 2   CPGACVCYNEPKVT-TSCPQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFR----- 53

Query: 76  NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP- 134
                                   NL  + L  N+L  I +  F  +  L  L+L+ N  
Sbjct: 54  ---------------------ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 135 ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPL 194
           +  ++   F  +  L  L +    L+ + P  F G  +L+ + L  N L   P  +   L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 195 LKLMMIELHDN 205
             L  + LH N
Sbjct: 153 GNLTHLFLHGN 163

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 27/104 (25%)

Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI 162
                   L ++P     +    + + L  N IS +   +F+    L  L          
Sbjct: 15  TTSCPQQGLQAVPVGIPAA---SQRIFLHGNRISHVPAASFRACRNLTILW--------- 62

Query: 163 SPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
                          L+ N L+     +   L  L  ++L DN 
Sbjct: 63  ---------------LHSNVLARIDAAAFTGLALLEQLDLSDNA 91

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  166 bits (422), Expect = 5e-48
 Identities = 57/241 (23%), Positives = 99/241 (41%), Gaps = 32/241 (13%)

Query: 16  SCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGL 74
           +CP  C C+       ++C ++ L  IPE  P+   T  L ++ N   +L      +  L
Sbjct: 4   ACPEKCRCEGT----TVDCSNQKLNKIPEHIPQY--TAELRLNNNEFTVLEATGIFK-KL 56

Query: 75  LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
             L+K+  +   I  I+ GA +G + + EI L+ N L ++    F+ +  L+ L L  N 
Sbjct: 57  PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN- 115

Query: 135 ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPL 194
                                  R+  +  ++F G  S+  + L  N+++     + + L
Sbjct: 116 -----------------------RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 195 LKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACK 254
             L  + L  NP+ C+C +  +  WL  K+ V   P C  P  L      D+   DF C 
Sbjct: 153 HSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCD 212

Query: 255 P 255
            
Sbjct: 213 D 213

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  164 bits (416), Expect = 3e-47
 Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 33/241 (13%)

Query: 16  SCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGL 74
            CP+ C C        ++CR K L  IP   PE+     + +  N ++++P  AF     
Sbjct: 4   HCPAACTCS----NNIVDCRGKGLTEIPTNLPET--ITEIRLEQNTIKVIPPGAFS--PY 55

Query: 75  LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
             L+++ L+   I ++   A  GL +L  + L  N +T +P   F+ +  L+ L L  N 
Sbjct: 56  KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115

Query: 135 ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPL 194
           I+ +   AFQ       L                   +L  + L  N+L      +  PL
Sbjct: 116 INCLRVDAFQ------DL------------------HNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 195 LKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACK 254
             +  + L  NP++CDC+++ +  +L           CT P RL+ K    + +  F C 
Sbjct: 152 RAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCS 211

Query: 255 P 255
            
Sbjct: 212 A 212

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  166 bits (422), Expect = 1e-46
 Identities = 39/254 (15%), Positives = 83/254 (32%), Gaps = 17/254 (6%)

Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP-ISKIEKGAFQFVPGLVKLDMSESRLEH 161
            +  + +               L +L +     +  +E    + +  L  L + +S L  
Sbjct: 12  GLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLA 221
           ++P+AF     L  + L+ N L     ++V+  L L  + L  NP  C C +R    WL 
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPLHCSCALR----WLQ 125

Query: 222 DKKNVPVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSI 281
             +   +        +  G+       +     P +++          ++  + C+V+  
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGR 185

Query: 282 PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR 341
                 W                    V++ G        +     + +     C AEN 
Sbjct: 186 GLEQAGWILTELEQSAT----------VMKSGGLPSLGLTLANVTSDLNRKNVTCWAEND 235

Query: 342 AGIADANFTLQVTY 355
            G A+ +  + V++
Sbjct: 236 VGRAEVSVQVNVSF 249

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  154 bits (391), Expect = 1e-42
 Identities = 49/232 (21%), Positives = 83/232 (35%), Gaps = 36/232 (15%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEIDLSDNL 110
           + LD+S N +  +    F   GL  L+ L     ++ Q+ +      L NLI +D+S   
Sbjct: 81  KYLDLSFNGVITMS-SNFL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 111 LTSIPSLTFQSVRFLRDLNLARNP-ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
                +  F  +  L  L +A N          F  +  L  LD+S+ +LE +SP AF  
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMM-------------------------IELHD 204
             SL+ + ++ N          + L  L +                         + L  
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

Query: 205 NPWVCDCNMRSIKMWLADKKNV---PVQPACTGPERLSGKVFSDLHADDFAC 253
           N + C C  +S   W+ D++ +     +  C  P    G     L   +  C
Sbjct: 258 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL---NITC 306

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  132 bits (335), Expect = 8e-35
 Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 14/194 (7%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLL 75
           CPS C C        + C  K L ++P   P S     L++  N LQ LP   F    L 
Sbjct: 1   CPSRCSCS----GTEIRCNSKGLTSVPTGIPSS--ATRLELESNKLQSLPHGVF--DKLT 52

Query: 76  NLQKLFLARCHI--GQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
            L KL L+   +      S +  G T+L  +DLS N + ++ S  F  +  L  L+   +
Sbjct: 53  QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHS 111

Query: 134 PISKI-EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNR-LSHFPVRSV 191
            + ++ E   F  +  L+ LD+S +         F G  SLE +K+ GN    +F     
Sbjct: 112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

Query: 192 EPLLKLMMIELHDN 205
             L  L  ++L   
Sbjct: 172 TELRNLTFLDLSQC 185

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  151 bits (383), Expect = 3e-39
 Identities = 47/221 (21%), Positives = 83/221 (37%), Gaps = 11/221 (4%)

Query: 40  ITIPEAPESELT--QVLDMSGNNL-QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD 96
             I  A    L   Q LD   + L ++    AF    L  L  L ++  +      G   
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDGIFL 445

Query: 97  GLTNLIEIDLSDN-LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMS 155
           GLT+L  + ++ N    +  S  F +   L  L+L++  + +I  G F  +  L  L+MS
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRS 215
            + L  +    +    SL ++  + NR+             L    L +N   C C  + 
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQK 565

Query: 216 IKMWLADKKNV---PVQPACTGPERLSGKVFSDLHADDFAC 253
              W+ ++K       Q  C  P  ++  +  D   ++  C
Sbjct: 566 FLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDF--NNSTC 604

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  110 bits (278), Expect = 9e-26
 Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 6/165 (3%)

Query: 42  IPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNL 101
           +    E             L  +P +        + + + L+   +  + S +    + L
Sbjct: 4   LNPCIEVVPNITYQCMDQKLSKVPDDIPS-----STKNIDLSFNPLKILKSYSFSNFSEL 58

Query: 102 IEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
             +DLS   + +I    +  +  L +L L  NPI     G+F  +  L  L   E++L  
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSV-EPLLKLMMIELHDN 205
           +         +L+ + +  N +    + +    L  L+ ++L  N
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  101 bits (253), Expect = 1e-22
 Identities = 36/188 (19%), Positives = 69/188 (36%), Gaps = 22/188 (11%)

Query: 39  LITIPEAPESELTQVLDMSGNNLQILPKEAFRR-----------------AGLLNLQKLF 81
           +  + + P+    Q L +    L+  P                         L +L  L 
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356

Query: 82  LARCHIGQIDSGALDGL--TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI- 138
           L+R  +      +   L   +L  +DLS N    + +  F  +  L+ L+   + + ++ 
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVT 415

Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSV-EPLLKL 197
           E  AF  +  L+ LD+S +  +      F G  SL ++K+ GN      + +V      L
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475

Query: 198 MMIELHDN 205
             ++L   
Sbjct: 476 TFLDLSKC 483

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 98.6 bits (246), Expect = 9e-22
 Identities = 38/166 (22%), Positives = 60/166 (36%), Gaps = 15/166 (9%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQID-SGALDGLTNLIEIDLSDNL 110
           + L      L  L         L+ L+KL +A   I           LTNL+ +DLS N 
Sbjct: 107 ENLVAVETKLASLESFPIG--QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164

Query: 111 LTSIPSLTFQSVRFLRD----LNLARNPISKIEKGAFQFVPGLVKLDMSESRL-EHISPE 165
           + +I     Q +R        L+++ NPI  I+  AFQ +  L +L +  +    +I   
Sbjct: 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKT 223

Query: 166 AFTGAKSLESIKLNGNR------LSHFPVRSVEPLLKLMMIELHDN 205
                  L   +L          L  F    +E L  + + E    
Sbjct: 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 83.2 bits (206), Expect = 7e-17
 Identities = 28/180 (15%), Positives = 53/180 (29%), Gaps = 24/180 (13%)

Query: 47  ESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDL 106
              L         NL+I           + + +  L   +    D      L N+  + L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 107 SDNLLTSIPS-------------------LTFQSVRFLRDLNLARNPISKIEKGAFQFVP 147
           +   +  +                          + FL+ L L  N  S         +P
Sbjct: 293 AGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF--KKVALP 350

Query: 148 GLVKLDMSESRLEHISPEAFT--GAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
            L  LD+S + L      +++  G  SL  + L+ N        +   L +L  ++   +
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHS 409

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.6 bits (202), Expect = 2e-16
 Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 17/167 (10%)

Query: 48  SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCH-IGQIDSGALDGLTNLIEIDL 106
            ++   LDMS N +  +  +AF+    + L +L L        I    L  L  L    L
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQ---GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 107 SDNLLTSIPSL------TFQSVRFLR--DLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
                    +L        + +  +   +  L        +   F  +  +  + ++   
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           ++++           +S+ +   +L  FP      L  L  + L  N
Sbjct: 297 IKYLEDVPKHF--KWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMN 338

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 27/105 (25%)

Query: 102 IEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
           I     D  L+ +P     S    ++++L+ NP+  ++  +F     L  LD        
Sbjct: 14  ITYQCMDQKLSKVPDDIPSS---TKNIDLSFNPLKILKSYSFSNFSELQWLD-------- 62

Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
                           L+   +     ++   L  L  + L  NP
Sbjct: 63  ----------------LSRCEIETIEDKAWHGLHHLSNLILTGNP 91

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  141 bits (357), Expect = 3e-38
 Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 10/191 (5%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             L ++GN +Q L   AF  +GL +LQKL     ++  +++  +  L  L E++++ NL+
Sbjct: 79  STLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 112 TSIPSL-TFQSVRFLRDLNLARNPISKIEKGAFQFVPGL----VKLDMSESRLEHISPEA 166
            S      F ++  L  L+L+ N I  I     + +  +    + LD+S + +  I P A
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 167 FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNM-RSIKMWLADKK- 224
           F   + L+ + L+ N+L   P    + L  L  I LH NPW C C     +  WL     
Sbjct: 197 FKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 255

Query: 225 NVPVQPACTGP 235
                  C+G 
Sbjct: 256 KEQGSAKCSGS 266

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 95.8 bits (239), Expect = 3e-22
 Identities = 43/190 (22%), Positives = 68/190 (35%), Gaps = 34/190 (17%)

Query: 18  PSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
           P   +          +C +     IP+  P S  T+ LD+S N L+ L            
Sbjct: 2   PCVEVV----PNITYQCMELNFYKIPDNLPFS--TKNLDLSFNPLRHLG----------- 44

Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
                          S +      L  +DLS   + +I    +QS+  L  L L  NPI 
Sbjct: 45  ---------------SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSV-EPLL 195
            +  GAF  +  L KL   E+ L  +        K+L+ + +  N +  F +      L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 196 KLMMIELHDN 205
            L  ++L  N
Sbjct: 150 NLEHLDLSSN 159

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 102 IEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
           I     +     IP     S    ++L+L+ NP+  +   +F   P L  LD+S   ++ 
Sbjct: 10  ITYQCMELNFYKIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
           I   A+     L ++ L GN +    + +   L  L  +   +  
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  146 bits (370), Expect = 2e-37
 Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 7/192 (3%)

Query: 15  SSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAG 73
           +S    CI K     +   C +  L  IP   P S  T+ L+ S N L  +    F    
Sbjct: 2   TSSDQKCIEKEVN--KTYNCENLGLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFS--R 55

Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           L+NL  L L RC I  I          L  + L+ N L  +        + L+ L   + 
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP 193
            IS I+         L  L +  + +  I        + L+ +    N + +     +  
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS 175

Query: 194 LLKLMMIELHDN 205
           L +   + L+ N
Sbjct: 176 LQQATNLSLNLN 187

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  125 bits (315), Expect = 2e-30
 Identities = 42/256 (16%), Positives = 79/256 (30%), Gaps = 57/256 (22%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + LD+S ++++       +   L +LQ L L+      + + A      L  +DL+   L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 112 TSIPSLT-FQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI---SPEAF 167
               + + FQ++  L+ LNL+ + +    +  F  +P L  L++  +           + 
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472

Query: 168 TGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN---------------------- 205
                LE + L+   LS     +   L  +  ++L  N                      
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLAS 532

Query: 206 -------------------------PWVCDCNMRSIKMWLADKKNV---PVQPACTGPER 237
                                    P  C C+      W  +            C  P  
Sbjct: 533 NHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPL 592

Query: 238 LSGKVFSDLHADDFAC 253
           L G   SD+     +C
Sbjct: 593 LRGVRLSDV---TLSC 605

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  113 bits (285), Expect = 1e-26
 Identities = 32/158 (20%), Positives = 59/158 (37%), Gaps = 7/158 (4%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             L ++ N L  + + A    G   L+ LF  +  I  ID   L     L  + L  N +
Sbjct: 84  DTLVLTANPLIFMAETALS--GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI 141

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL--VKLDMSESRLEHISPEAFTG 169
           +SI          L+ L+   N I  + K     +     + L+++ + +  I P AF  
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201

Query: 170 AKSLESIKLNGNRLSHFPVRSVE--PLLKLMMIELHDN 205
           A   +S+   G +      + ++   +  L +    D 
Sbjct: 202 A-VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  106 bits (267), Expect = 2e-24
 Identities = 24/157 (15%), Positives = 60/157 (38%), Gaps = 4/157 (2%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
            +      + + +    F     ++++ + L + +   I S      + L E+DL+   L
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSE-SRLEHISPEAFTGA 170
           + +PS     +  L+ L L+ N    + + +    P L  L +   ++   +        
Sbjct: 291 SELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

Query: 171 KSLESIKLNGNRLSHFPVRSVE--PLLKLMMIELHDN 205
           ++L  + L+ + +      +++   L  L  + L  N
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  102 bits (255), Expect = 7e-23
 Identities = 32/172 (18%), Positives = 66/172 (38%), Gaps = 5/172 (2%)

Query: 38  FLITIPEAPESELT-QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD 96
            +  I          Q L+  G    ++  +  + + + +L            I     +
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 97  GL--TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
           GL   ++  I+L  +   +I S TF     L++L+L    +S++  G       L KL +
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGL-STLKKLVL 308

Query: 155 SESRLEHISPEAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELHDN 205
           S ++ E++   + +   SL  + + GN          +E L  L  ++L  +
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 27/104 (25%)

Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI 162
             +  +  L  IP              L  +                  L+ S + L  I
Sbjct: 16  TYNCENLGLNEIPG------------TLPNS---------------TECLEFSFNVLPTI 48

Query: 163 SPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
               F+   +L  + L   ++      + +   +L  + L  NP
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  139 bits (353), Expect = 6e-37
 Identities = 48/207 (23%), Positives = 86/207 (41%), Gaps = 10/207 (4%)

Query: 3   LVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNL 61
           ++ V   L    SS  ++  C         +     L +IP    E+   + LD+S N +
Sbjct: 10  VLGVIISLSKEESSNQASLSC---DRNGICKGSSGSLNSIPSGLTEA--VKSLDLSNNRI 64

Query: 62  QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQS 121
             +     +    +NLQ L L    I  I+  +   L +L  +DLS N L+++ S  F+ 
Sbjct: 65  TYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP 122

Query: 122 VRFLRDLNLARNPISKI-EKGAFQFVPGLVKLDMSE-SRLEHISPEAFTGAKSLESIKLN 179
           +  L  LNL  NP   + E   F  +  L  L +        I  + F G   LE ++++
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 180 GNRLSHFPVRSVEPLLKLMMIELHDNP 206
            + L  +  +S++ +  +  + LH   
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQ 209

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  131 bits (331), Expect = 8e-34
 Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 35/218 (16%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCH-IGQIDSGALDGLTNLIEIDLSDNL 110
             L++ GN  + L + +     L  LQ L +       +I      GLT L E+++  + 
Sbjct: 127 TFLNLLGNPYKTLGETSLFS-HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS------- 163
           L S    + +S++ +  L L       + +        +  L++ ++ L+          
Sbjct: 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 164 ------------------------PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMM 199
                                    +       L  ++ + N+L   P    + L  L  
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305

Query: 200 IELHDNPWVCDCNM-RSIKMWLADKK-NVPVQPACTGP 235
           I LH NPW C C     +  WL            C+G 
Sbjct: 306 IWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 343

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 105 DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISP 164
             S   L SIPS   ++   ++ L+L+ N I+ I     Q    L  L ++ + +  I  
Sbjct: 37  KGSSGSLNSIPSGLTEA---VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93

Query: 165 EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC 209
           ++F+   SLE + L+ N LS+      +PL  L  + L  NP+  
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  133 bits (338), Expect = 1e-35
 Identities = 72/262 (27%), Positives = 111/262 (42%), Gaps = 28/262 (10%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEA-PES--------------------ELTQ--V 53
               C C     K  ++C  K L  IP   P                       LT+  +
Sbjct: 8   DGGVCSCN--NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRL 65

Query: 54  LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTS 113
           L ++ N LQ LP   F    L NL+ L++    +  +  G  D L NL E+ L  N L S
Sbjct: 66  LYLNDNKLQTLPAGIF--KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123

Query: 114 IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSL 173
           +P   F S+  L  L+L  N +  + KG F  +  L +L +  ++L+ +   AF     L
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183

Query: 174 ESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNM-RSIKMWLADKKNVPVQPAC 232
           +++KL+ N+L   P  + + L KL M++L +NPW C CN    +  WL  K +  +    
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVD 243

Query: 233 TGPERLSGKVFSDLHADDFACK 254
           T      GK   ++   D A  
Sbjct: 244 TAGCEKGGKAVLEITEKDAASD 265

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.9 bits (151), Expect = 8e-11
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 3/119 (2%)

Query: 87  IGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV 146
           + + D G      N   +D S   LT+IPS         + L+L  N +S +   AF  +
Sbjct: 4   LCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPAD---TKKLDLQSNKLSSLPSKAFHRL 60

Query: 147 PGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
             L  L +++++L+ +    F   K+LE++ +  N+L   P+   + L+ L  + L  N
Sbjct: 61  TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  135 bits (341), Expect = 2e-35
 Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 18/194 (9%)

Query: 15  SSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAG 73
           + CP  C C      + ++C D  L  +P+       T +LD+  N++  L K+ F   G
Sbjct: 25  AMCPFGCHCH----LRVVQCSDLGLKAVPKEISPD--TTLLDLQNNDISELRKDDF--KG 76

Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           L +L  L L    I +I   A   L  L ++ +S N L  IP     S   L +L +  N
Sbjct: 77  LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDN 133

Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEH--ISPEAFTGAKSLESIKLNGNRLSHFPVRSV 191
            I K+ KG F  +  +  ++M  + LE+    P AF G K L  ++++  +L+  P    
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDL- 191

Query: 192 EPLLKLMMIELHDN 205
                L  + L  N
Sbjct: 192 --PETLNELHLDHN 203

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  112 bits (283), Expect = 1e-27
 Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 11/157 (7%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           Q L +S N+L  +P          +L +L +    I ++  G   GL N+  I++  N L
Sbjct: 105 QKLYISKNHLVEIPPNLPS-----SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159

Query: 112 TS--IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
            +       F  ++ L  L ++   ++ I K        L +L +  ++++ I  E    
Sbjct: 160 ENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLR 215

Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
              L  + L  N++      S+  L  L  + L +N 
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  110 bits (276), Expect = 1e-26
 Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 14/162 (8%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             L +S   L  +PK+         L +L L    I  I+   L   + L  + L  N +
Sbjct: 175 NYLRISEAKLTGIPKDLPE-----TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
             I + +   +  LR+L+L  N +S++  G    +  L  + +  + +  +    F    
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVG 288

Query: 172 ------SLESIKLNGNRLSHFPVRSV--EPLLKLMMIELHDN 205
                     I L  N + ++ V+      +   + I+  + 
Sbjct: 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (259), Expect = 2e-24
 Identities = 31/152 (20%), Positives = 60/152 (39%), Gaps = 12/152 (7%)

Query: 39  LITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
           L  IP+     L + L +  N +Q +  E         L +L L    I  I++G+L  L
Sbjct: 184 LTGIPKDLPETLNE-LHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFL 240

Query: 99  TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ------FVPGLVKL 152
             L E+ L +N L+ +P+     ++ L+ + L  N I+K+    F              +
Sbjct: 241 PTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299

Query: 153 DMSESRLEH--ISPEAFTGAKSLESIKLNGNR 182
            +  + + +  + P  F       +I+    +
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.2 bits (219), Expect = 3e-19
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 99  TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
            +   +DL +N ++ +    F+ ++ L  L L  N ISKI + AF  +  L KL +S++ 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
           L  I P       SL  ++++ NR+   P      L  +  IE+  NP
Sbjct: 114 LVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  140 bits (355), Expect = 3e-35
 Identities = 47/220 (21%), Positives = 81/220 (36%), Gaps = 17/220 (7%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           Q L +    L+ +         L NL  L L+  +I  I+   L+GL  L  +DL  N L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 112 TSI--------PSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
             +        P    + +  L  LNL  N   +I    F+ +  L  +D+  + L  + 
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK-LMMIELHDNPWVCDC-NMRSIKMWLA 221
              F    SL+S+ L  N ++    +   P  + L  +++  NP+ C C ++     W+ 
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636

Query: 222 DKKNVPVQPA----CTGPERLSGKVFSDL---HADDFACK 254
           +      + +    C  P    G            D A  
Sbjct: 637 ETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAHH 676

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  126 bits (319), Expect = 9e-31
 Identities = 41/176 (23%), Positives = 71/176 (40%), Gaps = 7/176 (3%)

Query: 34  CRDKFLITIP-EAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS 92
           C    L  +P + P +    VL+++ N L+ LP   F       L  L +    I +++ 
Sbjct: 11  CSHLKLTQVPDDLPTN--ITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEP 66

Query: 93  GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL 152
                L  L  ++L  N L+ +   TF     L +L+L  N I KI+   F     L+ L
Sbjct: 67  ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126

Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVR--SVEPLLKLMMIELHDNP 206
           D+S + L           ++L+ + L+ N++         +     L  +EL  N 
Sbjct: 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  121 bits (305), Expect = 6e-29
 Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 5/159 (3%)

Query: 52  QVLDMSGNNLQI--LPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
           + L +S +   +  L  E F       L  L L +  I +I+S A   L +L  +DL  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 110 LLT-SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI--SPEA 166
            +   +    ++ +  + ++ L+ N   ++ + +F  VP L +L +    L+++  SP  
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 167 FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           F   ++L  + L+ N +++     +E L KL +++L  N
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  119 bits (301), Expect = 2e-28
 Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 5/154 (3%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           +V D S   L  +P +        N+  L L    + ++ +      + L  +D+  N +
Sbjct: 7   EVADCSHLKLTQVPDDLPT-----NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
           + +     Q +  L+ LNL  N +S++    F F   L +L +  + ++ I    F   K
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           +L ++ L+ N LS   + +   L  L  + L +N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  114 bits (287), Expect = 8e-27
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 13/165 (7%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ-IDSGALDGLTNLIEIDLSDNL 110
            +L+++ N +  +  +AF    L +L+ L L    IGQ +      GL N+ EI LS N 
Sbjct: 384 HILNLTKNKISKIESDAFS--WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441

Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEK--GAFQFVPGLVKLDMSESRLEHISPEAFT 168
              +   +F  V  L+ L L R  +  ++     FQ +  L  LD+S + + +I+ +   
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 169 GAKSLESIKLNGNRLSHF--------PVRSVEPLLKLMMIELHDN 205
           G + LE + L  N L+          P+  ++ L  L ++ L  N
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  112 bits (282), Expect = 3e-26
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 5/171 (2%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           Q L +S N +Q L  E        +L+KL L+   I +   G    +  L  + L++  L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

Query: 112 T-SIPSLTFQSVRF--LRDLNLARNPISKIEKGAFQF--VPGLVKLDMSESRLEHISPEA 166
             S+       +    +R+L+L+ + +S      F       L  LD+S + L  +  ++
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 167 FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIK 217
           F     LE   L  N + H    S+  L  +  + L  +      ++ S+ 
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  105 bits (263), Expect = 9e-24
 Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 9/148 (6%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + L +S + L       F      NL  L L+  ++  + + +   L  L    L  N +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

Query: 112 TSIPSLTFQSVRFLRDLNLARN---------PISKIEKGAFQFVPGLVKLDMSESRLEHI 162
             + S +   +  +R LNL R+          + KI+  +FQ++  L  L+M ++ +  I
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344

Query: 163 SPEAFTGAKSLESIKLNGNRLSHFPVRS 190
               FTG  +L+ + L+ +  S   + +
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTN 372

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  104 bits (262), Expect = 1e-23
 Identities = 43/168 (25%), Positives = 73/168 (43%), Gaps = 15/168 (8%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL- 110
            +LD+S NNL ++  ++F    L  L+  FL   +I  + S +L GL N+  ++L  +  
Sbjct: 251 TMLDLSYNNLNVVGNDSFA--WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 111 --------LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE-- 160
                   L  I   +FQ ++ L  LN+  N I  I+   F  +  L  L +S S     
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 161 HISPEAFTG--AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
            ++ E F       L  + L  N++S     +   L  L +++L  N 
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.8 bits (231), Expect = 6e-20
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 3/130 (2%)

Query: 76  NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
           + +    +   + Q+       +T L   +L+ N L  +P+  F     L  L++  N I
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNITVL---NLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 136 SKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL 195
           SK+E    Q +P L  L++  + L  +S + F    +L  + L  N +            
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 196 KLMMIELHDN 205
            L+ ++L  N
Sbjct: 122 NLITLDLSHN 131

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 4e-15
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 3/107 (2%)

Query: 99  TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
            +    D S   LT +P     +   +  LNL  N + ++    F     L  LD+  + 
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           +  + PE       L+ + L  N LS    ++      L  + L  N
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  139 bits (352), Expect = 3e-35
 Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 7/188 (3%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEIDLSDNL 110
           + LD+S N +  +        GL  L+ L     ++ Q+ +      L NLI +D+S   
Sbjct: 376 KYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISK-IEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
                +  F  +  L  L +A N   +      F  +  L  LD+S+ +LE +SP AF  
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNM-RSIKMWLADKKN-VP 227
             SL+ + +  N+L   P    + L  L  I LH NPW C C     +  WL        
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 552

Query: 228 VQPACTGP 235
               C+G 
Sbjct: 553 GSAKCSGS 560

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  125 bits (317), Expect = 7e-31
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 10/179 (5%)

Query: 34  CRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS 92
           C +     IP+  P S  T+ LD+S N L+ L   +F       LQ L L+RC I  I+ 
Sbjct: 14  CMELNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIED 69

Query: 93  GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL 152
           GA   L++L  + L+ N + S+    F  +  L+ L      ++ +E      +  L +L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 153 DMSESRLEHIS-PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKL----MMIELHDNP 206
           +++ + ++    PE F+   +LE + L+ N++       +  L ++    + ++L  NP
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  108 bits (272), Expect = 4e-25
 Identities = 34/158 (21%), Positives = 58/158 (36%), Gaps = 6/158 (3%)

Query: 53  VLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLT 112
                  N   +P          + + L L+   +  + S +      L  +DLS   + 
Sbjct: 11  TYQCMELNFYKIPDNLPF-----STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 113 SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKS 172
           +I    +QS+  L  L L  NPI  +  GAF  +  L KL   E+ L  +        K+
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 173 LESIKLNGNRLSHFPV-RSVEPLLKLMMIELHDNPWVC 209
           L+ + +  N +  F +      L  L  ++L  N    
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.2 bits (237), Expect = 9e-21
 Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 17/188 (9%)

Query: 39  LITIPEAPESELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSG-AL 95
           + ++     S L+  Q L     NL  L         L  L++L +A   I         
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYF 145

Query: 96  DGLTNLIEIDLSDNLLTSIPSLTFQSVRFLR----DLNLARNPISKIEKGAFQFVPGLVK 151
             LTNL  +DLS N + SI     + +  +      L+L+ NP++ I+ GAF+ +  L K
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHK 204

Query: 152 LDMSESRLE-HISPEAFTGAKSLESIKL------NGNRLSHFPVRSVEPLLKLMMIELHD 204
           L +  +    ++      G   LE  +L      N   L  F   ++E L  L + E   
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 205 NPWVCDCN 212
                  +
Sbjct: 265 AYLDYYLD 272

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.4 bits (165), Expect = 6e-12
 Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 25/181 (13%)

Query: 47  ESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQID-SGALDGLTNLIEID 105
              L      +  NL+   K A      L +++  LA       D     + LTN+    
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 106 LSDNLLTSIPSLTFQ-------------------SVRFLRDLNLARNPISKIEKGAFQFV 146
           L    +  +   ++                     ++ L+ L    N        +   +
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDL 346

Query: 147 PGLVKLDMSESRLEHIS--PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHD 204
           P L  LD+S + L       ++  G  SL+ + L+ N +      +   L +L  ++   
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQH 405

Query: 205 N 205
           +
Sbjct: 406 S 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  137 bits (347), Expect = 3e-35
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 2/181 (1%)

Query: 57  SGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPS 116
              N +      F+      ++   L++  I  +        T+L ++ L+ N +  I  
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316

Query: 117 LTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESI 176
             F  +  L  LNL++N +  I+   F+ +  L  LD+S + +  +  ++F G  +L+ +
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376

Query: 177 KLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNM-RSIKMWLADKK-NVPVQPACTG 234
            L+ N+L   P    + L  L  I LH NPW C C     +  WL            C+G
Sbjct: 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG 436

Query: 235 P 235
            
Sbjct: 437 S 437

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  123 bits (311), Expect = 2e-30
 Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 14/245 (5%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
             S C            C ++ L  +PE P       +D+S N++  L + +F    L +
Sbjct: 4   GTSECSV----IGYNAICINRGLHQVPELPAH--VNYVDLSLNSIAELNETSFS--RLQD 55

Query: 77  LQKLFLARCHIGQ-IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
           LQ L + +   G  I +    GL++LI + L  N    + +  F  +  L  L L +  +
Sbjct: 56  LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL 115

Query: 136 --SKIEKGAFQFVPGLVKLDMSESRLEHISPE-AFTGAKSLESIKLNGNRLSHFPVRSVE 192
             + +    F+ +  L  L + ++ ++ I P   F   +    + L  N++       + 
Sbjct: 116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL 175

Query: 193 PLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFA 252
                    L     +   +M    +    K   P +        LSG  F +  A  F 
Sbjct: 176 NFQGKHFTLL-RLSSITLQDMNEYWLGWE-KCGNPFKNTSITTLDLSGNGFKESMAKRFF 233

Query: 253 CKPEI 257
                
Sbjct: 234 DAIAG 238

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.2 bits (198), Expect = 4e-16
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             L++S N L  +    F    L  L+ L L+  HI  +   +  GL NL E+ L  N L
Sbjct: 326 LKLNLSQNFLGSIDSRMFE--NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383

Query: 112 TSIPSLTFQSVRFLRDLNLARNP 134
            S+P   F  +  L+ + L  NP
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 25/180 (13%), Positives = 51/180 (28%), Gaps = 28/180 (15%)

Query: 52  QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLT--NLIEIDLSD 108
           ++L +  NN++ I P   F    +     L L    +  I    L      +   + LS 
Sbjct: 132 EMLVLRDNNIKKIQPASFF--LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189

Query: 109 NLLTSIPSLTFQSVRF--------LRDLNLARNPISKIEKGAFQFVPGLVKL-------- 152
             L  +        +         +  L+L+ N   +     F       K+        
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 153 -----DMSESRLEHISPEAFTG--AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
                    +  +      F G  A  +++  L+ +++             L  + L  N
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  133 bits (337), Expect = 2e-34
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 5/154 (3%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           +++    + ++ LP           ++ L L    I +ID+ A      + ++ +  N +
Sbjct: 48  KIVTFKNSTMRKLPAALL--DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
             +P   FQ+V  L  L L RN +S + +G F   P L  L MS + LE I  + F    
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           SL++++L+ NRL+H  +     +  L    +  N
Sbjct: 166 SLQNLQLSSNRLTHVDLSL---IPSLFHANVSYN 196

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  121 bits (306), Expect = 4e-30
 Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 12/169 (7%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + LD S N++ ++            L  L L   ++       L     L+E+DLS N L
Sbjct: 208 EELDASHNSINVVRGPVNV-----ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL 260

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
             I    F  ++ L  L ++ N +  +     Q +P L  LD+S + L H+         
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQP-QFD 318

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWL 220
            LE++ L+ N +       +     L  + L  N W C+      +   
Sbjct: 319 RLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRALFRNVA 364

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (294), Expect = 1e-28
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 24/170 (14%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL------------- 98
             L MS NNL+ +  + F+     +LQ L L+   +  +D   +  L             
Sbjct: 144 TTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 201

Query: 99  ---TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMS 155
                + E+D S N +  +          L  L L  N ++          PGLV++D+S
Sbjct: 202 AIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDT--AWLLNYPGLVEVDLS 256

Query: 156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
            + LE I    F   + LE + ++ NRL        +P+  L +++L  N
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHN 305

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (291), Expect = 3e-28
 Identities = 30/173 (17%), Positives = 64/173 (36%), Gaps = 12/173 (6%)

Query: 39  LITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
           +  +      ELT  L +  NNL               L ++ L+   + +I       +
Sbjct: 217 INVVRGPVNVELTI-LKLQHNNLTDTA--WL--LNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 99  TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
             L  + +S+N L ++     Q +  L+ L+L+ N +  +E+   QF   L  L +  + 
Sbjct: 272 QRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQF-DRLENLYLDHNS 329

Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDC 211
           +  +         +L+++ L+ N      +R+      +    + D    C  
Sbjct: 330 IVTLKLSTHH---TLKNLTLSHNDWDCNSLRA--LFRNVARPAVDDADQHCKI 377

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (291), Expect = 3e-28
 Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 1/173 (0%)

Query: 33  ECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS 92
           + R      I  +         D+  +         F    L N + +      + ++ +
Sbjct: 4   KPRQPEYKCID-SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62

Query: 93  GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL 152
             LD    +  ++L+D  +  I +  F     ++ L +  N I  +    FQ VP L  L
Sbjct: 63  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
            +  + L  +    F     L ++ ++ N L      + +    L  ++L  N
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  125 bits (317), Expect = 4e-33
 Identities = 37/196 (18%), Positives = 77/196 (39%), Gaps = 13/196 (6%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
               C C     ++      K +  IP  P S  TQ L +   +L+ +P  AF    L N
Sbjct: 4   SSPPCECH---QEEDFRVTCKDIQRIPSLPPS--TQTLKLIETHLRTIPSHAFS--NLPN 56

Query: 77  LQKLFLAR-CHIGQIDSGALDGLTNLIEIDLSDN-LLTSIPSLTFQSVRFLRDLNLARNP 134
           + +++++    + Q++S +   L+ +  I++ +   LT I     + +  L+ L +    
Sbjct: 57  ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG 116

Query: 135 ISKI-EKGAFQFVPGLVKLDMSE-SRLEHISPEAFTG-AKSLESIKLNGNRLSHFPVRSV 191
           +    +            L++++   +  I   AF G      ++KL  N  +     + 
Sbjct: 117 LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176

Query: 192 EPLLKLMMIELHDNPW 207
               KL  + L+ N +
Sbjct: 177 N-GTKLDAVYLNKNKY 191

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 6/126 (4%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLAR-CHIGQIDSGALDGLTN-LIEIDLSDN 109
           + L +    L++ P              L +    ++  I   A  GL N  + + L +N
Sbjct: 108 KFLGIFNTGLKMFPDLTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 110 LLTSIPSLTFQSVRFLRDLNLARNP-ISKIEKGAFQFVP-GLVKLDMSESRLEHISPEAF 167
             TS+    F   + L  + L +N  ++ I+K AF  V  G   LD+S++ +  +  +  
Sbjct: 167 GFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225

Query: 168 TGAKSL 173
              K L
Sbjct: 226 EHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 48  SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIGQIDSGALDGLTNLIEI-D 105
              T  L +  N    +   AF       L  ++L +  ++  ID  A  G+ +   + D
Sbjct: 155 CNETLTLKLYNNGFTSVQGYAFN---GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 106 LSDNLLTSIPSLTFQSVRFLRDLNL 130
           +S   +T++PS   + ++ L   N 
Sbjct: 212 VSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 49  ELTQVLDMSGNN-LQILPKEAFRRAGLLN-LQKLFLARCHIGQIDSGALDGLTNLIEIDL 106
           ++  +L+++ N  +  +P  AF+  GL N    L L       +   A +G T L  + L
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQ--GLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186

Query: 107 SDN-LLTSIPSLTFQSVR-FLRDLNLARNPISKIEKGAFQFVPGLVKLD 153
           + N  LT I    F  V      L++++  ++ +     + +  L+  +
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  132 bits (334), Expect = 5e-33
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 5/154 (3%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           +++    + ++ LP           ++ L L    I +ID+ A      + ++ +  N +
Sbjct: 54  KIVTFKNSTMRKLPAALL--DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
             +P   FQ+V  L  L L RN +S + +G F   P L  L MS + LE I  + F    
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           SL++++L+ NRL+H  +     +  L    +  N
Sbjct: 172 SLQNLQLSSNRLTHVDLSL---IPSLFHANVSYN 202

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (306), Expect = 2e-29
 Identities = 41/204 (20%), Positives = 76/204 (37%), Gaps = 13/204 (6%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + LD S N++ ++            L  L L   ++   D+  L     L+E+DLS N L
Sbjct: 214 EELDASHNSINVVRGPVNV-----ELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNEL 266

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
             I    F  ++ L  L ++ N +  +     Q +P L  LD+S + L H+         
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQP-QFD 324

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPA 231
            LE++ L+ N +    + +      L  + L  N W C+    ++   +A          
Sbjct: 325 RLENLYLDHNSIVTLKLST---HHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQH 380

Query: 232 CTGPERLSGKVFSDLHADDFACKP 255
           C    +L   +        +  + 
Sbjct: 381 CKIDYQLEHGLCCKESDKPYLDRL 404

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (297), Expect = 3e-28
 Identities = 32/184 (17%), Positives = 68/184 (36%), Gaps = 9/184 (4%)

Query: 27  GGKQW--MECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFR---RAGLLNLQKLF 81
           GG+Q   ++ R      I     S L         ++ +  ++ +       L N + + 
Sbjct: 2   GGQQRYNVKPRQPEYKCID----SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVT 57

Query: 82  LARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKG 141
                + ++ +  LD    +  ++L+D  +  I +  F     ++ L +  N I  +   
Sbjct: 58  FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117

Query: 142 AFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIE 201
            FQ VP L  L +  + L  +    F     L ++ ++ N L      + +    L  ++
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177

Query: 202 LHDN 205
           L  N
Sbjct: 178 LSSN 181

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  116 bits (291), Expect = 2e-27
 Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 24/170 (14%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLT------------ 99
             L MS NNL+ +  + F+     +LQ L L+   +  +D   +  L             
Sbjct: 150 TTLSMSNNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 207

Query: 100 ----NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMS 155
                + E+D S N +  +          L  L L  N ++          PGLV++D+S
Sbjct: 208 AIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDT--AWLLNYPGLVEVDLS 262

Query: 156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
            + LE I    F   + LE + ++ NRL        +P+  L +++L  N
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHN 311

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  124 bits (314), Expect = 2e-32
 Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 10/217 (4%)

Query: 14  VSSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRA 72
           + +C +   C    GK+ ++C+ K L ++P   P    T+ LD+    L  L    FR  
Sbjct: 1   MKTCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPAD--TEKLDLQSTGLATLSDATFR-- 56

Query: 73  GLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLAR 132
           GL  L  L L    +  + +G  D LT L  + L++N L S+P   F  +  L  L L  
Sbjct: 57  GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116

Query: 133 NPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVE 192
           N +  +  G F  +  L +L ++ ++L+ I   AF    +L+++ L+ N+L   P  + +
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176

Query: 193 PLLKLMMIELHDNPWVCDCNMRSI---KMWLADKKNV 226
            L KL  I L  N + C      I     W+ +  N 
Sbjct: 177 RLGKLQTITLFGNQFDCSRC--EILYLSQWIRENSNK 211

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  128 bits (324), Expect = 8e-32
 Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 12/186 (6%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           Q L +S N+L+ + K       L NL  L ++R     +          +  ++LS   +
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGI 422

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
             + +   Q+   L  L+++ N +         F+P L +L +S ++L+ +   +     
Sbjct: 423 RVVKTCIPQT---LEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPDASL--FP 473

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRS-IKMWLADKKN-VPVQ 229
            L  +K++ N+L   P    + L  L  I LH NPW C C     +  WL          
Sbjct: 474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS 533

Query: 230 PACTGP 235
             C+G 
Sbjct: 534 AKCSGS 539

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  104 bits (261), Expect = 8e-24
 Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 7/157 (4%)

Query: 51  TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
           + V D    +   +P           ++ L L+   I  I  G L    NL  + L  + 
Sbjct: 7   SGVCDGRSRSFTSIPSGLTA-----AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS-PEAFTG 169
           + +I    F S+  L  L+L+ N +S +    F  +  L  L++  +  + +     F  
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 170 AKSLESIKL-NGNRLSHFPVRSVEPLLKLMMIELHDN 205
             +L+++++ N    S         L  L  +E+   
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  100 bits (252), Expect = 1e-22
 Identities = 37/185 (20%), Positives = 73/185 (39%), Gaps = 5/185 (2%)

Query: 39  LITIPEAPESELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIGQIDSGAL 95
           L ++  +    L+  + L++ GN  Q L   +     L NLQ L +       +I     
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDF 144

Query: 96  DGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMS 155
            GLT+L E+++    L +  S + +S+R +  L L  +  + + +     +  +  L++ 
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC-DCNMR 214
           ++ L           +    +K    R S     S   LLKL+   L  +     DC + 
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264

Query: 215 SIKMW 219
            +  +
Sbjct: 265 GLGDF 269

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.2 bits (224), Expect = 3e-19
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 50  LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
           L  + D + +   ++ +        + +++L + + ++    S     L  +  I + ++
Sbjct: 263 LNGLGDFNPSESDVVSELGKVE--TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 110 LLTSIPSLTFQSVRFLRDLNLARNPISKI---EKGAFQFVPGLVKLDMSESRLEHIS--P 164
            +  +P    Q ++ L  L+L+ N + +            P L  L +S++ L  +    
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380

Query: 165 EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           E     K+L S+ ++ N     P  S +   K+  + L   
Sbjct: 381 EILLTLKNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSST 420

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.8 bits (197), Expect = 8e-16
 Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 105 DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISP 164
           D      TSIPS    +   ++ L+L+ N I+ I  G  +    L  L +  SR+  I  
Sbjct: 11  DGRSRSFTSIPSGLTAA---MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 165 EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
           +AF    SLE + L+ N LS        PL  L  + L  NP
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 21/191 (10%), Positives = 55/191 (28%), Gaps = 25/191 (13%)

Query: 38  FLITIPEAPESELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGAL 95
               + E     L+  + L++   NL                  +         +   + 
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP--VDEVSSPMKKLAFRGSVLTDESF 240

Query: 96  DGLTNLIEI------------------DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISK 137
           + L  L+                    D + +    +  L       +R L++ +  +  
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 138 IEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP---L 194
                +  +  + ++ +  S++  +        KSLE + L+ N +    +++       
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 195 LKLMMIELHDN 205
             L  + L  N
Sbjct: 361 PSLQTLVLSQN 371

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  123 bits (312), Expect = 2e-31
 Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + L +S N L+ LP++  +      LQ+L +    I ++     +GL  +I ++L  N L
Sbjct: 103 ERLYLSKNQLKELPEKMPK-----TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157

Query: 112 TS--IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
            S  I +  FQ ++ L  + +A   I+ I +G     P L +L +  +++  +   +  G
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKG 214

Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
             +L  + L+ N +S     S+     L  + L++N 
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  113 bits (286), Expect = 5e-28
 Identities = 29/162 (17%), Positives = 69/162 (42%), Gaps = 14/162 (8%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             + ++  N+  +P+         +L +L L    I ++D+ +L GL NL ++ LS N +
Sbjct: 174 SYIRIADTNITTIPQGLPP-----SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAF---- 167
           +++ + +  +   LR+L+L  N + K+  G       +  + +  + +  I    F    
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287

Query: 168 --TGAKSLESIKLNGNRLSHFPVRSV--EPLLKLMMIELHDN 205
             T   S   + L  N + ++ ++      +     ++L + 
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  110 bits (276), Expect = 1e-26
 Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 11/139 (7%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             L + GN +  +   + +  GL NL KL L+   I  +D+G+L    +L E+ L++N L
Sbjct: 195 TELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV------PGLVKLDMSESRLEH--IS 163
             +P       ++++ + L  N IS I    F              + +  + +++  I 
Sbjct: 253 VKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 164 PEAFTGAKSLESIKLNGNR 182
           P  F       +++L   +
Sbjct: 312 PSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (264), Expect = 5e-25
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 38/194 (19%)

Query: 15  SSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAG 73
             CP  C C      + ++C D  L  +P+  P    T +LD+  N +  +    F+   
Sbjct: 23  PVCPFRCQC----HLRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKITEIKDGDFK--- 73

Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
                                   L NL  + L +N ++ I    F  +  L  L L++N
Sbjct: 74  -----------------------NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRL--SHFPVRSV 191
            + ++ +        L +L + E+ +  +    F G   +  ++L  N L  S     + 
Sbjct: 111 QLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 192 EPLLKLMMIELHDN 205
           + + KL  I + D 
Sbjct: 168 QGMKKLSYIRIADT 181

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.4 bits (217), Expect = 6e-19
 Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 3/108 (2%)

Query: 99  TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
            +   +DL +N +T I    F++++ L  L L  N ISKI  GAF  +  L +L +S+++
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
           L+ +  +     K+L+ ++++ N ++         L +++++EL  NP
Sbjct: 112 LKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  127 bits (321), Expect = 3e-31
 Identities = 47/226 (20%), Positives = 80/226 (35%), Gaps = 33/226 (14%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDGLTNLIEIDLSDNL 110
           + LD+S N +  +        GL  L+ L     ++    +      L NLI +D+S   
Sbjct: 376 KYLDLSFNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISK-IEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
                +  F  +  L  L +A N   +      F  +  L  LD+S+ +LE +SP AF  
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKL-------------------------MMIELHD 204
             SL+ + ++ N          + L  L                           + L  
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 205 NPWVCDCNMRSIKMWLADKKNVPVQPA---CTGPERLSGKVFSDLH 247
           N + C C  +S   W+ D++ + V+     C  P    G     L+
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  115 bits (290), Expect = 3e-27
 Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 8/187 (4%)

Query: 21  CICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLLNLQK 79
           C+          +C +     IP+  P S  T+ LD+S N L+ L   +F       LQ 
Sbjct: 3   CVEVVPNIT--YQCMELNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSFF--SFPELQV 56

Query: 80  LFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIE 139
           L L+RC I  I+ GA   L++L  + L+ N + S+    F  +  L+ L      ++ +E
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 140 KGAFQFVPGLVKLDMSESRLEHIS-PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLM 198
                 +  L +L+++ + ++    PE F+   +LE + L+ N++       +  L ++ 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 199 MIELHDN 205
           ++ L  +
Sbjct: 177 LLNLSLD 183

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 91.6 bits (228), Expect = 1e-19
 Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 22/175 (12%)

Query: 52  QVLDMSGNNLQILPKEAFRR-----------------AGLLNLQKLFLARCHIGQID--S 92
           Q L++        P    +                    L +L+ L L+R  +      S
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 93  GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISK-IEKGAFQFVPGLVK 151
            +  G T+L  +DLS N + ++ S  F  +  L  L+   + + +  E   F  +  L+ 
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 152 LDMSESRLEHISPEAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELHDN 205
           LD+S +         F G  SLE +K+ GN    +F       L  L  ++L   
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.2 bits (219), Expect = 2e-18
 Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 15/166 (9%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSG-ALDGLTNLIEIDLSDNL 110
           Q L     NL  L         L  L++L +A   I           LTNL  +DLS N 
Sbjct: 103 QKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 111 LTSIPSLTFQSVRFLR----DLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE-HISPE 165
           + SI     + +  +      L+L+ NP++ I+ GAF+ +  L KL +  +    ++   
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKT 219

Query: 166 AFTGAKSLESIKL------NGNRLSHFPVRSVEPLLKLMMIELHDN 205
              G   LE  +L      N   L  F   ++E L  L + E    
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.9 bits (208), Expect = 4e-17
 Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 27/176 (15%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGAL---------------- 95
               +    ++ +   ++        Q L L  C  GQ  +  L                
Sbjct: 285 SSFSLVSVTIERVKDFSY----NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

Query: 96  ---DGLTNLIEIDLSDNLLT--SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLV 150
                L +L  +DLS N L+     S +      L+ L+L+ N +  +    F  +  L 
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE 399

Query: 151 KLDMSESRLEHISP-EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
            LD   S L+ +S    F   ++L  + ++              L  L ++++  N
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 11/157 (7%)

Query: 52  QVLDMSGNNLQILPKEAFRR-AGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
            + +     L     +       L N+    L    I ++   +         ++L +  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCK 315

Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRL--EHISPEAFT 168
               P+L  +S++ L   +            +   +P L  LD+S + L  +    ++  
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAF-----SEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 169 GAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           G  SL+ + L+ N +      +   L +L  ++   +
Sbjct: 371 GTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHS 406

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 28/109 (25%)

Query: 98  LTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES 157
           + N+      +     IP             NL  +                  LD+S +
Sbjct: 7   VPNIT-YQCMELNFYKIPD------------NLPFS---------------TKNLDLSFN 38

Query: 158 RLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
            L H+   +F     L+ + L+   +      + + L  L  + L  NP
Sbjct: 39  PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (307), Expect = 4e-29
 Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 10/179 (5%)

Query: 34  CRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIG-QIDS 92
            R   L  +P+   +  T+ L +S N ++ +   +F    L  LQ L L   +    ID 
Sbjct: 11  YRFCNLTQVPQVLNT--TERLLLSFNYIRTVTASSF--PFLEQLQLLELGSQYTPLTIDK 66

Query: 93  GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISK--IEKGAFQFVPGLV 150
            A   L NL  +DL  + +  +    FQ +  L +L L    +S   ++ G F+ +  L 
Sbjct: 67  EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126

Query: 151 KLDMSESRLEHISPE-AFTGAKSLESIKLNGNRLSHFPVRSVEPL--LKLMMIELHDNP 206
           +LD+S++++  +    +F    SL+SI  + N++       +EPL    L    L  N 
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (288), Expect = 7e-27
 Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 12/178 (6%)

Query: 52  QVLDMSGNNLQILPKEAFRRA----------GLLNLQKLFLARCHIGQIDSGALDGL--T 99
           ++LD+SGN   +     F  A             ++        +I   D     GL  +
Sbjct: 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARS 266

Query: 100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRL 159
           ++  +DLS   + S+ S  F++++ L+ LNLA N I+KI   AF  +  L  L++S + L
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326

Query: 160 EHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIK 217
             +    F G   +  I L  N ++    ++ + L KL  ++L DN       + SI 
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  113 bits (285), Expect = 2e-26
 Identities = 39/234 (16%), Positives = 84/234 (35%), Gaps = 39/234 (16%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHI-----GQIDSGALDGLTNLIEIDL 106
           Q+L ++ N       +    +   +L++LFL    +      ++     +GL++L  + L
Sbjct: 429 QILILNQNRFSSCSGDQTP-SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 107 SDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEA 166
           + N L S+P   F  +  LR L+L  N ++ +                            
Sbjct: 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP---------------------- 525

Query: 167 FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNV 226
                +LE + ++ N+L           + L ++++  N ++C+C + +   WL      
Sbjct: 526 ----ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELSTFINWLNHTNVT 578

Query: 227 ----PVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVC 276
               P    C  P+  SG     L  +    +  ++     +  V +   T+  
Sbjct: 579 IAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFL 632

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  113 bits (284), Expect = 3e-26
 Identities = 29/158 (18%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
                  +N++   +  F      +++ L L+   +  ++S   + L +L  ++L+ N +
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI 302

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
             I    F  +  L+ LNL+ N + ++    F  +P +  +D+ ++ +  I  + F   +
Sbjct: 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC 209
            L+++ L  N L+         +  +  I L  N  V 
Sbjct: 363 KLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVT 395

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  108 bits (272), Expect = 7e-25
 Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 10/158 (6%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           ++      NL  +P+       L   ++L L+  +I  + + +   L  L  ++L     
Sbjct: 7   RIAFYRFCNLTQVPQ------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 112 T-SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH--ISPEAFT 168
             +I    F+++  LR L+L  + I  +   AFQ +  L +L +    L    +    F 
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 169 GAKSLESIKLNGNRLSHFPVRSV-EPLLKLMMIELHDN 205
             K+L  + L+ N++    +      L  L  I+   N
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 93.7 bits (233), Expect = 4e-20
 Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 20/174 (11%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTN------LIEID 105
           + +D S N + ++ +          L    LA   +    S       N      L  +D
Sbjct: 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILD 210

Query: 106 LSDNLLTSIPSLTFQS------------VRFLRDLNLARNPISKIEKGAFQ--FVPGLVK 151
           +S N  T   +  F +               +       + I   ++  F       +  
Sbjct: 211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270

Query: 152 LDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           LD+S   +  ++   F   K L+ + L  N+++     +   L  L ++ L  N
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.8 bits (228), Expect = 2e-19
 Identities = 42/180 (23%), Positives = 68/180 (37%), Gaps = 32/180 (17%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD--- 108
           QVL++S N L  L    F   GL  +  + L + HI  I       L  L  +DL D   
Sbjct: 317 QVLNLSYNLLGELYSSNFY--GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 109 ----------------NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQF-VPGLVK 151
                           N L ++P +          ++L+ N +  ++   F   VP L  
Sbjct: 375 TTIHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYFLLRVPHLQI 430

Query: 152 LDMSESRLEHISPEA-FTGAKSLESIKLNGNRL-----SHFPVRSVEPLLKLMMIELHDN 205
           L ++++R    S +   +   SLE + L  N L     +       E L  L ++ L+ N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  115 bits (289), Expect = 8e-29
 Identities = 45/175 (25%), Positives = 65/175 (37%), Gaps = 28/175 (16%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             LD+S N LQ LP        L  L  L ++   +  +  GAL GL  L E+ L  N L
Sbjct: 80  GTLDLSHNQLQSLP-LLG--QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
            ++P         L  L+LA N ++++  G    +  L  L + E+ L  I    F    
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG--- 193

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNV 226
                                    L    LH NPW+C+C +   + WL D    
Sbjct: 194 ----------------------SHLLPFAFLHGNPWLCNCEILYFRRWLQDNAEN 226

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  113 bits (285), Expect = 8e-28
 Identities = 38/196 (19%), Positives = 73/196 (37%), Gaps = 12/196 (6%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLL 75
           C    IC          C++  +  IP   P +     L      L+++ K AF  +G  
Sbjct: 2   CHH-RICHCSNRV--FLCQESKVTEIPSDLPRN--AIELRFVLTKLRVIQKGAF--SGFG 54

Query: 76  NLQKLFLARCHIGQ-IDSGALDGLTNLIEIDLSD-NLLTSIPSLTFQSVRFLRDLNLARN 133
           +L+K+ +++  + + I++     L  L EI +   N L  I    FQ++  L+ L ++  
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 134 PISKIEKGAFQFVPGLVKLDMSE-SRLEHISPEAFTG-AKSLESIKLNGNRLSHFPVRSV 191
            I  +           V LD+ +   +  I   +F G +     + LN N +      + 
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174

Query: 192 EPLLKLMMIELHDNPW 207
                  +    +N  
Sbjct: 175 NGTQLDELNLSDNNNL 190

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  113 bits (285), Expect = 1e-27
 Identities = 39/232 (16%), Positives = 81/232 (34%), Gaps = 15/232 (6%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLAR-CHIGQIDSGALDGLT-NLIEIDLSDN 109
           Q L +S   ++ LP         L    L +    +I  I+  +  GL+   + + L+ N
Sbjct: 107 QYLLISNTGIKHLPDVHKI--HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164

Query: 110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
            +  I +  F   +         N + ++    F    G V LD+S +R+  +       
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224

Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMW-----LADKK 224
            K L +   +   L   P  ++E L+ LM   L   P  C       +       + +K 
Sbjct: 225 LKKLRA--RSTYNLKKLP--TLEKLVALMEASL-TYPSHCCAFANWRRQISELHPICNKS 279

Query: 225 NVPVQPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVC 276
            +  +       R      ++ +   ++   ++   + +   + +E   V C
Sbjct: 280 ILRQEVDYMTQARGQRSSLAEDNESSYSRGFDM-TYTEFDYDLCNEVVDVTC 330

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (281), Expect = 2e-27
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 13/165 (7%)

Query: 42  IPEAPES-ELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTN 100
           I E  ++    ++  ++ ++L+             N+++L L+   + QI +  L   T 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLR--QSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 101 LIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE 160
           L  ++LS N+L        +S+  LR L+L  N + ++  G     P +  L  + + + 
Sbjct: 60  LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNNIS 112

Query: 161 HISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
            +S          ++I L  N+++           ++  ++L  N
Sbjct: 113 RVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  110 bits (278), Expect = 5e-27
 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 35/192 (18%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + LD++ N +Q L           +++ L  A  +I ++      G  N+    L++N +
Sbjct: 83  RTLDLNNNYVQELLV-------GPSIETLHAANNNISRVSCSRGQGKKNI---YLANNKI 132

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ-----------------------FVPG 148
           T +  L       ++ L+L  N I  +                                 
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK 192

Query: 149 LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV 208
           L  LD+S ++L  +    F  A  +  I L  N+L     +++     L   +L  N + 
Sbjct: 193 LKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFH 250

Query: 209 CDCNMRSIKMWL 220
           C           
Sbjct: 251 CGTLRDFFSKNQ 262

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 113 SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKS 172
           +I  +  Q+    +   +  + + +      Q    + +LD+S + L  IS         
Sbjct: 1   AIHEI-KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 173 LESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           LE + L+ N L       +E L  L  ++L++N
Sbjct: 60  LELLNLSSNVLYETL--DLESLSTLRTLDLNNN 90

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  114 bits (288), Expect = 3e-27
 Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 12/191 (6%)

Query: 51  TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQID--SGALDGLTNLIEIDLSD 108
              LD S N L     E      L  L+ L L    + ++   +     + +L ++D+S 
Sbjct: 326 FLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383

Query: 109 NLLTSI-PSLTFQSVRFLRDLNLARNPISKIEKGAF-QFVPGLVKLDMSESRLEHISPEA 166
           N ++           + L  LN++ N    +    F    P +  LD+  ++++ I  + 
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSN---ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQV 440

Query: 167 FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRS-IKMWLADKK- 224
               ++L+ + +  N+L   P    + L  L  I LH NPW C C     +  WL     
Sbjct: 441 V-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ 499

Query: 225 NVPVQPACTGP 235
                  C+G 
Sbjct: 500 KEQGSAKCSGS 510

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 29/157 (18%), Positives = 66/157 (42%), Gaps = 9/157 (5%)

Query: 53  VLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLT 112
           ++D S N L  +PK+  +         L +++ +I ++ +  +  L+ L  + +S N + 
Sbjct: 4   LVDRSKNGLIHVPKDLSQ-----KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ 58

Query: 113 SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI-SPEAFTGAK 171
            +    F+  + L  L+L+ N + KI   +      L  LD+S +  + +   + F    
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMS 115

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV 208
            L+ + L+   L    V  +  L    ++ +    + 
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
           +D S N L  +P    Q       LN+++N IS++       +  L  L +S +R++++ 
Sbjct: 5   VDRSKNGLIHVPKDLSQKTTI---LNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC 209
              F   + LE + L+ N+L         P + L  ++L  N +  
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDA 104

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 17/133 (12%), Positives = 41/133 (30%), Gaps = 2/133 (1%)

Query: 75  LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
            ++  + L      +    +   L  L    +  ++     S  ++    +   N   + 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 135 ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRS--VE 192
              +       +   + LD S + L     E       LE++ L  N+L      +    
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 193 PLLKLMMIELHDN 205
            +  L  +++  N
Sbjct: 372 QMKSLQQLDISQN 384

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 23/169 (13%), Positives = 49/169 (28%), Gaps = 10/169 (5%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEIDLSDNL 110
           + LD+S N L  +          +NL+ L L+      +        ++ L  + LS   
Sbjct: 72  EYLDLSHNKLVKISCH-----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126

Query: 111 LTSIPSLTFQSVRFLR-DLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTG 169
           L     L    +   +  L L      K +    Q         +      +        
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD---FNTESLHIVFPTNKEFHFILD 183

Query: 170 AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKM 218
                   L  + +      +       ++ +L  NP + +  + +I+ 
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  111 bits (279), Expect = 3e-26
 Identities = 44/296 (14%), Positives = 88/296 (29%), Gaps = 40/296 (13%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + LD++ N +Q L           +++ L  A  +I ++      G  N+    L++N +
Sbjct: 83  RTLDLNNNYVQELL-------VGPSIETLHAANNNISRVSCSRGQGKKNI---YLANNKI 132

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ-----------------------FVPG 148
           T +  L       ++ L+L  N I  +                                 
Sbjct: 133 TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK 192

Query: 149 LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV 208
           L  LD+S ++L  +    F  A  +  I L  N+L     +++     L   +L  N + 
Sbjct: 193 LKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFH 250

Query: 209 CDCNMRSIKMWLADKKNVPVQPA-CTGPERLSGKVFSDLHADDFACKP-EIRMDSRYVEA 266
           C             +          TG       V +  H   + C+        R +  
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 267 VSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
              E+A +  +               R        +  ++   +      RK + +
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQ---REIDALKEQYRTVIDQVTLRKQAKI 363

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (276), Expect = 8e-26
 Identities = 28/156 (17%), Positives = 65/156 (41%), Gaps = 12/156 (7%)

Query: 51  TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
            ++  ++ ++L+       +     N+++L L+   + QI +  L   T L  ++LS N+
Sbjct: 12  YKIEKVTDSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
           L        +S+  LR L+L  N + ++  G     P +  L  + + +  +S       
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNNISRVSCSRGQ-- 120

Query: 171 KSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
              ++I L  N+++           ++  ++L  N 
Sbjct: 121 -GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 113 SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKS 172
           +I  +  Q+    +   +  + + +      Q    + +LD+S + L  IS         
Sbjct: 1   AIHEI-KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 173 LESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           LE + L+ N L       +E L  L  ++L++N
Sbjct: 60  LELLNLSSNVLYETL--DLESLSTLRTLDLNNN 90

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 13/143 (9%), Positives = 38/143 (26%), Gaps = 5/143 (3%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
            +L   G+  + L  E          +++   +     +           I ++     L
Sbjct: 316 ALLSGQGSETERLECERE---NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS-PEAFTGA 170
               S   ++   L           +++  A +    L  L     R E +   +     
Sbjct: 373 DEQVSNGRRAHAELDGTLQQAVGQIELQ-HATEEQSPLQLLRAIVKRYEEMYVEQQSVQN 431

Query: 171 KSLESIKLNGNRLSHFPVRSVEP 193
            ++    +  ++ +     +   
Sbjct: 432 NAIRDWDMYQHKETQLAEENARL 454

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score =  100 bits (252), Expect = 9e-25
 Identities = 54/239 (22%), Positives = 87/239 (36%), Gaps = 58/239 (24%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEA-FRRAGL 74
           CP+ C C+       ++C  + L  IP   P    T  L ++ N L  +  +  F R  L
Sbjct: 2   CPAMCHCE----GTTVDCTGRGLKEIPRDIPLH--TTELLLNDNELGRISSDGLFGR--L 53

Query: 75  LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
            +L KL L R  +  I+  A +G +++ E+ L +N +  I +  F  +  L+ LNL  N 
Sbjct: 54  PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113

Query: 135 ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPL 194
           IS +  G+F                                       L+          
Sbjct: 114 ISCVMPGSF-------------------------------------EHLN---------- 126

Query: 195 LKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFAC 253
             L  + L  NP+ C+C++     WL  K        C  P ++      DL   +F C
Sbjct: 127 -SLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKC 184

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 98.9 bits (247), Expect = 5e-24
 Identities = 54/241 (22%), Positives = 88/241 (36%), Gaps = 58/241 (24%)

Query: 15  SSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAG 73
           S CP+ C C        + C +K L  +P+  P       L + GN   ++P        
Sbjct: 2   SRCPTECTC---LDTV-VRCSNKGLKVLPKGIPRD--VTELYLDGNQFTLVP-------- 47

Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
                                L    +L  IDLS+N ++++ + +F ++  L  L L+ N
Sbjct: 48  -------------------KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88

Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP 193
            +  I    F        L                  KSL  + L+GN +S  P  +   
Sbjct: 89  RLRCIPPRTFD------GL------------------KSLRLLSLHGNDISVVPEGAFND 124

Query: 194 LLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFAC 253
           L  L  + +  NP  CDCNM+ +  W+  +   P    C GP  ++ K+     +  F C
Sbjct: 125 LSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTC 184

Query: 254 K 254
            
Sbjct: 185 A 185

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (262), Expect = 1e-23
 Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 20/195 (10%)

Query: 39  LITIPEAPESELT--QVLDMSGNNLQILPKEAFRR-----AGLLNLQKLFLARCHIGQI- 90
           +   P    +  +    + +S N +  +P+ + +           L  + L    +  + 
Sbjct: 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS 744

Query: 91  DSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLAR------NPISKIEKGAFQ 144
           D      L  L  +D+S N  +S P+    S + L+   +        N I +       
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQ-LKAFGIRHQRDAEGNRILRQWPTGIT 803

Query: 145 FVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELH- 203
             P L++L +  + +  +  +       L  + +  N      V SV P ++  M  L  
Sbjct: 804 TCPSLIQLQIGSNDIRKVDEKLTP---QLYILDIADNPNISIDVTSVCPYIEAGMYVLLY 860

Query: 204 -DNPWVCDCNMRSIK 217
                +  C+   I+
Sbjct: 861 DKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 99.2 bits (247), Expect = 7e-22
 Identities = 28/167 (16%), Positives = 61/167 (36%), Gaps = 15/167 (8%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL-----TNLIEIDL 106
           + L  S N L+ +P     +  +  +  +  +   IG         +      N   + L
Sbjct: 622 EGLGFSHNKLKYIPNIFNAK-SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680

Query: 107 SDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG-------LVKLDMSESRL 159
           S N +   P+  F +   +  + L+ N ++ I + + +   G       L  +D+  ++L
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

Query: 160 EHISPE-AFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
             +S +   T    L ++ ++ N  S FP        +L    +   
Sbjct: 741 TSLSDDFRATTLPYLSNMDVSYNCFSSFP-TQPLNSSQLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.8 bits (246), Expect = 1e-21
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 9/160 (5%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           Q+  M  NNL+  P  A     ++ L  L      +  +++        L ++ L  N +
Sbjct: 551 QIFYMGYNNLEEFPASASL-QKMVKLGLLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQI 607

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKI-EKGAFQFVPGLVKLDMSESRLEHISPEAFTG- 169
             IP         +  L  + N +  I      + V  +  +D S +++           
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 170 ----AKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
                 +  ++ L+ N +  FP         +  I L +N
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.8 bits (202), Expect = 3e-16
 Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 21/165 (12%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD-NL 110
           Q++  + +               ++ +          + +  +   L +L +++L +   
Sbjct: 451 QIIYFANSPFTYDNIA-------VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503

Query: 111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV---------PGLVKLDMSESRLEH 161
           +T +P      +  L+ LN+A N      +    +          P +    M  + LE 
Sbjct: 504 MTQLPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 162 ISPEA-FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
               A       L  +    N++ H    +    +KL  ++L  N
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYN 605

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 14/161 (8%), Positives = 52/161 (32%), Gaps = 11/161 (6%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             L ++G   +    +A  +  L  L+ L               D        +   + +
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQ--LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 112 T-SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS------P 164
                 +     + L   +L ++ I++  +   + +    ++ + ++++ +++       
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKDSRISLKDTQIGNLTNRITFIS 441

Query: 165 EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           +A      L+ I    +  ++  +            + ++N
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 26/159 (16%), Positives = 51/159 (32%), Gaps = 12/159 (7%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           +VL    ++  +  +         ++ +    R  +       LD    L   DL  + +
Sbjct: 350 KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM-HYKKMFLDYDQRLNLSDLLQDAI 408

Query: 112 TSIPSLTF---QSVRFLRDLNLAR--NPISKIEKGAFQFVPGLVKLDMSESRLEHISPEA 166
              P +      S   L+D  +    N I+ I K A Q +  L  +  + S   + +   
Sbjct: 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYDNIAV 467

Query: 167 FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
                  E    +  +       S   L  L  +EL++ 
Sbjct: 468 D-----WEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 16/122 (13%), Positives = 35/122 (28%), Gaps = 3/122 (2%)

Query: 85  CHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ 144
              G      LD    +  + L+              +  L+ L+   +  +   +    
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 145 FVPGLVKLDMSESRLE-HISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELH 203
                   +  + R+  H         + L    L  + ++  P   ++P+ K   I L 
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP--EMKPIKKDSRISLK 426

Query: 204 DN 205
           D 
Sbjct: 427 DT 428

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 9/137 (6%)

Query: 76  NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
            +  L LA          A+  LT L  +    +  T    L              ++ I
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 136 SK-IEKGAFQFVPGLVKLDMSESRLEH------ISPEAFTGAKSLESIKLNGNRLSHFPV 188
               +K    +   L   D+ +  +        I  ++    K  + I    NR++    
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRITFIS- 441

Query: 189 RSVEPLLKLMMIELHDN 205
           ++++ L KL +I   ++
Sbjct: 442 KAIQRLTKLQIIYFANS 458

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 95.1 bits (237), Expect = 6e-22
 Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 9/200 (4%)

Query: 30  QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ 89
             +   +  + ++         + L + GN L  +   A +   L NL  L L    +  
Sbjct: 44  DQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKE--LTNLTYLILTGNQLQS 99

Query: 90  IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
           + +G  D LTNL E+ L +N L S+P   F  +  L  LNLA N +  + KG F  +  L
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159

Query: 150 VKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC 209
            +LD+S ++L+ +    F     L+ ++L  N+L   P    + L  L  I LHDNPW C
Sbjct: 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219

Query: 210 DCNMRSI---KMWLADKKNV 226
            C    I     W+     V
Sbjct: 220 TC--PGIRYLSEWINKHSGV 237

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 97.2 bits (242), Expect = 2e-21
 Identities = 38/210 (18%), Positives = 73/210 (34%), Gaps = 12/210 (5%)

Query: 1   MYLVIVFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGN 59
             +V  F  +        S      +     ++  ++ L  +P+  P    T+ L +S N
Sbjct: 6   KPIVGSFHFVCALALIVGSMTPFSNELESM-VDYSNRNLTHVPKDLPPR--TKALSLSQN 62

Query: 60  NLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTF 119
           ++  L         L  L+ L L+   I  +D        +L  +D+S N L +I     
Sbjct: 63  SISELRMPDISF--LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPM 120

Query: 120 QSVRFLRDLNLARNPISKI-EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK-SLESIK 177
            S   LR L+L+ N    +     F  +  L  L +S ++   +          S   + 
Sbjct: 121 AS---LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177

Query: 178 LNGNRLSHFPVRSVEPLLKLMMIELHDNPW 207
           L    +      S+  +    ++ L  +P 
Sbjct: 178 LVSYHIKGGETESL-QIPNTTVLHLVFHPN 206

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.9 bits (228), Expect = 1e-19
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 12/167 (7%)

Query: 51  TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
              L+ + N       +    + L  LQ L L R  +      A     N+  ++  D  
Sbjct: 355 FTFLNFTQNVFTDSVFQGC--STLKRLQTLILQRNGLKNFFKVA-LMTKNMSSLETLDVS 411

Query: 111 LTSIPSLTF----QSVRFLRDLNLARNPISKIEKGAFQ-FVPGLVKLDMSESRLEHISPE 165
           L S+ S  +         +  LNL+ N    +    F+   P +  LD+  +R+  I P+
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSN---MLTGSVFRCLPPKVKVLDLHNNRIMSI-PK 467

Query: 166 AFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCN 212
             T  ++L+ + +  N+L   P    + L  L  I LHDNPW C C 
Sbjct: 468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 103 EIDLSDNLLTSIPS-LTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH 161
            +D S+  LT +P  L  +     + L+L++N IS++      F+  L  L +S +R+  
Sbjct: 35  MVDYSNRNLTHVPKDLPPR----TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS 90

Query: 162 ISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC 209
           +    F   + LE + ++ NRL +       P+  L  ++L  N +  
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDV 135

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 20/161 (12%), Positives = 45/161 (27%), Gaps = 4/161 (2%)

Query: 30  QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ 89
           Q +E   K  + + +       + L++    +               L+ L +       
Sbjct: 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316

Query: 90  I---DSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV 146
                         +    LS +    I  +   S      LN  +N  +         +
Sbjct: 317 FLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL 376

Query: 147 PGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP 187
             L  L +  + L++    A    K++ S++     L+   
Sbjct: 377 KRLQTLILQRNGLKNFFKVALM-TKNMSSLETLDVSLNSLN 416

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 95.5 bits (238), Expect = 9e-21
 Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 21/185 (11%)

Query: 39  LITIPEAPE-SELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGAL 95
           L T P      ++    +L+   N L+     AF     + L  L LA   I +I +   
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAF--GSEIKLASLNLAYNQITEIPANFC 373

Query: 96  DGLTNLIEIDLSDNLLTSIPSLTF-QSVRFLRDLNLARNPISKIEKGAFQFVPG------ 148
                +  +  + N L  IP++   +SV  +  ++ + N I  ++   F  +        
Sbjct: 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433

Query: 149 -LVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP-------LLKLMMI 200
            +  +++S +++     E F+    L SI L GN L+  P  S++           L  I
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493

Query: 201 ELHDN 205
           +L  N
Sbjct: 494 DLRFN 498

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.0 bits (229), Expect = 1e-19
 Identities = 29/179 (16%), Positives = 62/179 (34%), Gaps = 16/179 (8%)

Query: 52  QVLDMSGNNLQILPKEAFRR-----AGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEID 105
             +++ GN L  +PK + +           L  + L    + ++ D      L  L+ ID
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 106 LSDNLLTSIPS-----LTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE 160
           LS N  +  P+      T +        +   N   +         P L +L +  + + 
Sbjct: 520 LSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

Query: 161 HISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW--VCDCNMRSIK 217
            ++ +      ++  + +  N      +  V P ++  M  L  +    +  C+   IK
Sbjct: 580 KVNEKITP---NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.9 bits (226), Expect = 2e-19
 Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 17/169 (10%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDG-------LTNLIEI 104
           + L  + N L+ +P     +  +  +  +  +   IG +D    D          N+  I
Sbjct: 380 ENLSFAHNKLKYIPNIFDAK-SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 105 DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG-------LVKLDMSES 157
           +LS+N ++  P   F +   L  +NL  N +++I K + +           L  +D+  +
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

Query: 158 RLEHISPE-AFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           +L  +S +   T    L  I L+ N  S FP         L    + + 
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSKFP-TQPLNSSTLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 29/183 (15%), Positives = 63/183 (34%), Gaps = 18/183 (9%)

Query: 37  KFLITIPEAPE--SELTQVLDMSGNN-LQILPKEAFRRAGLLNLQKLFLARCHIGQIDSG 93
           +   T     +   +LT  +++     L  LP        L  +Q + +A       +  
Sbjct: 236 QQYKTEDLKWDNLKDLTD-VEVYNCPNLTKLPTFLKA---LPEMQLINVACNRGISGEQL 291

Query: 94  ALDG--------LTNLIEIDLSDNLLTSIP-SLTFQSVRFLRDLNLARNPISKIEKGAFQ 144
             D            +  I +  N L + P   + Q ++ L  L    N +      AF 
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350

Query: 145 FVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP-VRSVEPLLKLMMIELH 203
               L  L+++ +++  I        + +E++    N+L + P +   + +  +  I+  
Sbjct: 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS 410

Query: 204 DNP 206
            N 
Sbjct: 411 YNE 413

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 22/177 (12%), Positives = 52/177 (29%), Gaps = 17/177 (9%)

Query: 37  KFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD 96
            F+   P    S+L +   ++ +  Q   K++ R    L   ++     +I  +   A+ 
Sbjct: 148 TFVDYDPREDFSDLIK-DCINSDPQQKSIKKSSRI--TLKDTQIGQLSNNITFVSK-AVM 203

Query: 97  GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSE 156
            LT L +  + ++   +                  +    K +      +  L  +++  
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN-----LKDLTDVEVYN 258

Query: 157 SRLEHISPEAFTGAKSLESIKLNGNRLSHFPV--------RSVEPLLKLMMIELHDN 205
                  P        ++ I +  NR                     K+ +I +  N
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 18/142 (12%), Positives = 42/142 (29%), Gaps = 13/142 (9%)

Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLT---------SIPSLTFQSVRF 124
              +  L L           A+  LT L  + L  +             I +      + 
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 125 LRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLS 184
              ++  +  +    +  F     L+K  ++    +    ++         I    N ++
Sbjct: 140 KMRMHYQKTFVDYDPREDF---SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 185 HFPVRSVEPLLKLMMIELHDNP 206
               ++V  L KL    + ++P
Sbjct: 197 FVS-KAVMRLTKLRQFYMGNSP 217

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 7/95 (7%)

Query: 50  LTQVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD 108
           +    D  GN      P+         +L +L +    I +++        N+  +D+ D
Sbjct: 543 IRNQRDAQGNRTLREWPEG-I--TLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKD 596

Query: 109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAF 143
           N   SI               L  +    I     
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 12/154 (7%), Positives = 34/154 (22%), Gaps = 21/154 (13%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           +VL +  +  ++  +  F   G+         +          +D        DL  + +
Sbjct: 108 EVLALGSHGEKV-NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
            S P            L                      ++    + +  +  +A     
Sbjct: 167 NSDPQQKSIKKSSRITLK-------------------DTQIGQLSNNITFV-SKAVMRLT 206

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
            L    +  +      +            + +  
Sbjct: 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 14/127 (11%), Positives = 32/127 (25%), Gaps = 6/127 (4%)

Query: 85  CHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAF- 143
              G     +L+    +  + L     +         +  L  L L  +     E+    
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 144 QFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP-----LLKLM 198
           + +   +  +  +    H            +   L  + ++  P +          LK  
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 199 MIELHDN 205
            I    N
Sbjct: 187 QIGQLSN 193

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 87.8 bits (218), Expect = 5e-20
 Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 36/213 (16%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
           CPS C C        +EC  +   ++P    ++ T  LD+  N+L+ LP   F    L +
Sbjct: 1   CPSRCSC----SGTTVECYSQGRTSVPTGIPAQ-TTYLDLETNSLKSLPNGVFD--ELTS 53

Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
           L +L+L    +  + +G  + LT+L  ++LS N L S+P+  F  +  L++L L  N + 
Sbjct: 54  LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113

Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
            +  G F  +  L  L + +++L+ +    F             +RL+            
Sbjct: 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF-------------DRLT-----------S 149

Query: 197 LMMIELHDNPWVCDCNMRSI---KMWLADKKNV 226
           L  I LHDNPW C C    I     W+     V
Sbjct: 150 LQYIWLHDNPWDCTCP--GIRYLSEWINKHSGV 180

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 87.4 bits (217), Expect = 1e-19
 Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 39/214 (18%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLL 75
           CPS C C        ++CR K   ++P   P +   Q+L +  N +  L    F      
Sbjct: 13  CPSQCSC----SGTTVDCRSKRHASVPAGIPTN--AQILYLHDNQITKLEPGVF------ 60

Query: 76  NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
                               D L NL E+ L  N L ++P   F S+  L  L+L  N +
Sbjct: 61  --------------------DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100

Query: 136 SKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL 195
           + +    F  +  L +L M  ++L  + P        L  + L+ N+L   P  + + L 
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159

Query: 196 KLMMIELHDNPWVCDCNMRSI---KMWLADKKNV 226
            L    L  NPW C+C  R I   + W+AD  ++
Sbjct: 160 SLTHAYLFGNPWDCEC--RDIMYLRNWVADHTSI 191

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 89.5 bits (223), Expect = 1e-19
 Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 12/155 (7%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
                  N +  +       A +  L  L +    I  +    L  L+ L  +++  N +
Sbjct: 202 HYFTAYVNQITDIT--PV--ANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQI 255

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
           + I +   + +  L+ LN+  N IS I       +  L  L ++ ++L +   E   G  
Sbjct: 256 SDINA--VKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
           +L ++ L+ N ++      +  L K+   +  +  
Sbjct: 312 NLTTLFLSQNHITDIR--PLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.4 bits (202), Expect = 7e-17
 Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 33/190 (17%)

Query: 39  LITIPEAPESELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD 96
            ++      S +T    L ++ + ++ +       A L +L  L L    I  I    L 
Sbjct: 144 NLSDLSPL-SNMTGLNYLTVTESKVKDVT--PI--ANLTDLYSLSLNYNQIEDIS--PLA 196

Query: 97  GLTNLIEIDLSDNLLTSIPSLT--------------------FQSVRFLRDLNLARNPIS 136
            LT+L       N +T I  +                       ++  L  L +  N IS
Sbjct: 197 SLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQIS 256

Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
            I   A + +  L  L++  +++  IS         L S+ LN N+L +  +  +  L  
Sbjct: 257 DIN--AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312

Query: 197 LMMIELHDNP 206
           L  + L  N 
Sbjct: 313 LTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.7 bits (195), Expect = 5e-16
 Identities = 33/162 (20%), Positives = 71/162 (43%), Gaps = 15/162 (9%)

Query: 46  PESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIE 103
           P+++L +     +   ++  +  +      L ++ KL +A   +  I    ++ LTNL  
Sbjct: 17  PDADLAEGIRAVLQKASVTDVVTQE----ELESITKLVVAGEKVASIQ--GIEYLTNLEY 70

Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
           ++L+ N +T I  L+  ++  L +L +  N I+ I   A Q +  L +L ++E  +  IS
Sbjct: 71  LNLNGNQITDISPLS--NLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDIS 126

Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           P        + S+ L  N         +  +  L  + + ++
Sbjct: 127 P--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTES 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.0 bits (188), Expect = 4e-15
 Identities = 32/175 (18%), Positives = 69/175 (39%), Gaps = 33/175 (18%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + L+++GN +  +       + L+ L  L++    I  I   AL  LTNL E+ L+++ +
Sbjct: 69  EYLNLNGNQITDIS--PL--SNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNI 122

Query: 112 TSIPSLT---------------------FQSVRFLRDLNLARNPISKIEKGAFQFVPGLV 150
           + I  L                        ++  L  L +  + +  +       +  L 
Sbjct: 123 SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT--PIANLTDLY 180

Query: 151 KLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
            L ++ +++E ISP       SL       N+++      V  + +L  +++ +N
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNN 231

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.4 bits (163), Expect = 5e-12
 Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 8/109 (7%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             L++  N +  +   A     L  L+ L +    I  I    L+ L+ L  + L++N L
Sbjct: 246 TWLEIGTNQISDIN--AV--KDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQL 299

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE 160
            +        +  L  L L++N I+ I       +  +   D +   ++
Sbjct: 300 GNEDMEVIGGLTNLTTLFLSQNHITDIR--PLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 63.3 bits (155), Expect = 6e-11
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           ++L++  N +  +         L  L  LFL    +G  D   + GLTNL  + LS N +
Sbjct: 268 KMLNVGSNQISDIS--VL--NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISK 137
           T I  L   S+  +   + A   I K
Sbjct: 324 TDIRPLA--SLSKMDSADFANQVIKK 347

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 57/223 (25%), Positives = 78/223 (34%), Gaps = 63/223 (28%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLL 75
           CPS C C        + C  K L ++P   P S     L++  N LQ LP   F +  L 
Sbjct: 1   CPSRCSC----SGTEIRCNSKGLTSVPTGIPSS--ATRLELESNKLQSLPHGVFDK--LT 52

Query: 76  NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
            L KL L++  I  +  G  D LT L  + L +N L S+P+  F  +  L++L L  N +
Sbjct: 53  QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112

Query: 136 SKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL 195
             +  G F                                     +RL+           
Sbjct: 113 KSVPDGIF-------------------------------------DRLT----------- 124

Query: 196 KLMMIELHDNPWVCDCNMRSI---KMWLADKKN-VPVQPACTG 234
            L  I LH NPW C C    I     WL            C+G
Sbjct: 125 SLQKIWLHTNPWDCSC--PRIDYLSRWLNKNSQKEQGSAKCSG 165

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 77.2 bits (190), Expect = 3e-17
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 8/113 (7%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           P I   ++   A+  E   + C + S P P  I+W W   +L +     +  R  V    
Sbjct: 15  PIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESG----TSGRYTVETIS 69

Query: 314 -EYERKSSLVLTNAQESDSGRFY-CVAENRAGIADANFTLQVTYRGVGLPFLG 364
            E    S+L ++N   +D    Y C A N  G       L+     +  P  G
Sbjct: 70  TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSSG 122

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.4 bits (206), Expect = 6e-17
 Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 24/168 (14%)

Query: 39  LITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
           L ++P  P   L + L +S N L  LP           L KL+     +  + +      
Sbjct: 173 LTSLPMLPSG-LQE-LSVSDNQLASLPTL------PSELYKLWAYNNRLTSLPAL----P 220

Query: 99  TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
           + L E+ +S N LTS+P L  +    L++L ++ N ++ +         GL+ L +  ++
Sbjct: 221 SGLKELIVSGNRLTSLPVLPSE----LKELMVSGNRLTSLPML----PSGLLSLSVYRNQ 272

Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
           L  + PE+     S  ++ L GN LS   ++++  +        +  P
Sbjct: 273 LTRL-PESLIHLSSETTVNLEGNPLSERTLQALREITSA---PGYSGP 316

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 76.9 bits (189), Expect = 8e-15
 Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 28/185 (15%)

Query: 23  CKWK--GGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKL 80
             W+     +    R   +  +     +    VL++  + L  LP          ++  L
Sbjct: 13  SAWRRAAPAEESRGRAAVVQKMRACLNNGNA-VLNVGESGLTTLPDCLPA-----HITTL 66

Query: 81  FLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEK 140
            +   ++  +          L  +++S N LTS+P L    +  L   +     +  +  
Sbjct: 67  VIPDNNLTSLP----ALPPELRTLEVSGNQLTSLPVL-PPGLLELSIFSNPLTHLPAL-- 119

Query: 141 GAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMI 200
                  GL KL +  ++L  + P        L+ + ++ N+L+  P      L KL   
Sbjct: 120 -----PSGLCKLWIFGNQLTSL-PVLPP---GLQELSVSDNQLASLPA-LPSELCKL--- 166

Query: 201 ELHDN 205
             ++N
Sbjct: 167 WAYNN 171

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.4 bits (180), Expect = 8e-14
 Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 37/184 (20%)

Query: 39  LITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
           L ++P  P   L + L +S N L  LP      A    L KL+     +  +        
Sbjct: 133 LTSLPVLPPG-LQE-LSVSDNQLASLP------ALPSELCKLWAYNNQLTSLP----MLP 180

Query: 99  TNLIEIDLSDNLLTSIP-------SLTFQSVRF---------LRDLNLARNPISKIEKGA 142
           + L E+ +SDN L S+P        L   + R          L++L ++ N ++ +    
Sbjct: 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV-- 238

Query: 143 FQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIEL 202
                 L +L +S +RL  +          L S+ +  N+L+  P  S+  L     + L
Sbjct: 239 --LPSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNL 291

Query: 203 HDNP 206
             NP
Sbjct: 292 EGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 64.5 bits (157), Expect = 5e-11
 Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 15/176 (8%)

Query: 30  QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ 89
             +   +  L ++P  P   L + L +SGN L  LP           L++L ++   +  
Sbjct: 204 YKLWAYNNRLTSLPALPSG-LKE-LIVSGNRLTSLPVL------PSELKELMVSGNRLTS 255

Query: 90  IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
           +        + L+ + +  N LT +P  +   +     +NL  NP+S+    A + +   
Sbjct: 256 LP----MLPSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQALREITSA 310

Query: 150 VKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
                   R +     A    ++L       + L         P  +  M    DN
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHL--AAADWLVPAREGEPAPADRWHMFGQEDN 364

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 76.0 bits (187), Expect = 8e-17
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADK--KNVPVQ 229
               + L GN L+  P   ++ L  L    L  NPW CDC +  ++ WLA +  +     
Sbjct: 32  DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRD 91

Query: 230 PACTGPERLSGKVFSDLHADDFAC 253
             C  P  L G++   L  D+   
Sbjct: 92  LRCVAPPALRGRLLPYLAEDELRA 115

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 23/95 (24%), Positives = 29/95 (30%), Gaps = 33/95 (34%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPE--SELTQVLDMSGNNLQILPKEAFRRAGL 74
           CP+ C C        ++C  + L T    P      T  L ++GNNL  LP         
Sbjct: 2   CPAPCSCA----GTLVDCGRRGL-TWASLPTAFPVDTTELVLTGNNLTALP--------- 47

Query: 75  LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
                             G LD L  L    L  N
Sbjct: 48  -----------------PGLLDALPALRTAHLGAN 65

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 17/163 (10%)

Query: 46  PESELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIE 103
            + EL+  Q  +   +N+Q L           NL++L L+   I  +    L  LT L E
Sbjct: 36  SQKELSGVQNFNGDNSNIQSL--AGM--QFFTNLKELHLSHNQISDLS--PLKDLTKLEE 89

Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
           + ++ N L ++  +       L  L L  N +   +  +   +  L  L +  ++L+ I 
Sbjct: 90  LSVNRNRLKNLNGIPSAC---LSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV 144

Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
                    LE + L+GN +++     +  L K+  I+L    
Sbjct: 145 M--LGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 13/113 (11%)

Query: 95  LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
             GL N ++ +L    +T + S   + +  +++ N   + I  +     QF   L +L +
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQ--KELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHL 70

Query: 155 SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPL--LKLMMIELHDN 205
           S +++  +SP        LE + +N NRL      ++  +    L  + L +N
Sbjct: 71  SHNQISDLSP--LKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNN 116

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             L +  N L+    ++     L NL+ L +    +  I    L  L+ L  +DL  N +
Sbjct: 109 SRLFLDNNELRDT--DSL--IHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEI 162

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEK 140
           T+   L    ++ +  ++L          
Sbjct: 163 TNTGGL--TRLKKVNWIDLTGQKCVNEPV 189

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 9/93 (9%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           ++L +  N L+ +         L  L+ L L    I       L  L  +  IDL+    
Sbjct: 131 EILSIRNNKLKSIVMLG----FLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKC 184

Query: 112 TSIPSLTFQSVRF---LRDLNLARNPISKIEKG 141
            + P      +     ++D +        I  G
Sbjct: 185 VNEPVKYQPELYITNTVKDPDGRWISPYYISNG 217

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.4 bits (199), Expect = 3e-16
 Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 14/154 (9%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + L  + N +  +         L NL +L L    +  I +  L  LTNL ++DL++N +
Sbjct: 202 ESLIATNNQISDIT--PL--GILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQI 255

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
           +++  L+  +   L +L L  N IS I       +  L  L+++E++LE ISP   +  K
Sbjct: 256 SNLAPLSGLT--KLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP--ISNLK 309

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           +L  + L  N +S      V  L KL  +  ++N
Sbjct: 310 NLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNN 341

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 79.6 bits (197), Expect = 7e-16
 Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 16/162 (9%)

Query: 46  PESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIE 103
            ++ L +     +   N+     +      L  +  L   R  I  ID   ++ L NL +
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVSQT----DLDQVTTLQADRLGIKSID--GVEYLNNLTQ 72

Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
           I+ S+N LT I  L   ++  L D+ +  N I+ I       +  L  L +  +++  I 
Sbjct: 73  INFSNNQLTDITPLK--NLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDID 128

Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           P       +L  ++L+ N +S     ++  L  L  +   + 
Sbjct: 129 P--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.9 bits (190), Expect = 5e-15
 Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 15/154 (9%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             L++S N +  +   +    GL +LQ+L          D   L  LT L  +D+S N +
Sbjct: 137 NRLELSSNTISDISALS----GLTSLQQLSFGNQ---VTDLKPLANLTTLERLDISSNKV 189

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
           + I  L    +  L  L    N IS I       +  L +L ++ ++L+ I         
Sbjct: 190 SDISVL--AKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--LASLT 243

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           +L  + L  N++S+     +  L KL  ++L  N
Sbjct: 244 NLTDLDLANNQISNLA--PLSGLTKLTELKLGAN 275

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.0 bits (185), Expect = 2e-14
 Identities = 26/154 (16%), Positives = 55/154 (35%), Gaps = 12/154 (7%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             L +  N +  +       AGL  L  L L    +  I    +  L NL  + L  N +
Sbjct: 268 TELKLGANQISNIS--PL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
           + I  ++  S+  L+ L    N +S +   +   +  +  L    +++  ++P       
Sbjct: 322 SDISPVS--SLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLT 375

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
            +  + LN    ++ PV     +     ++    
Sbjct: 376 RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 11/136 (8%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             L+++ N L+ +       + L NL  L L   +I  I    +  LT L  +   +N +
Sbjct: 290 TNLELNENQLEDIS--PI--SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKV 343

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
           + + SL   ++  +  L+   N IS +       +  + +L +++    +          
Sbjct: 344 SDVSSLA--NLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKANVS 399

Query: 172 SLESIKLNGNRLSHFP 187
              ++K N       P
Sbjct: 400 IPNTVK-NVTGALIAP 414

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 28/116 (24%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           Q L    N +  +   A     L N+  L      I  +    L  LT + ++ L+D   
Sbjct: 334 QRLFFYNNKVSDVSSLA----NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387

Query: 112 TSIPSLTFQSVR----------------------FLRDLNLARNPISKIEKGAFQF 145
           T+ P     +V                          + ++  N  S   + ++ F
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTF 443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 79.6 bits (196), Expect = 8e-16
 Identities = 43/255 (16%), Positives = 80/255 (31%), Gaps = 26/255 (10%)

Query: 39  LITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
           L T+PE P S L   LD+  N L +LP+          L+ +      +  +     +  
Sbjct: 112 LSTLPELPAS-LKH-LDVDNNQLTMLPEL------PALLEYINADNNQLTMLP----ELP 159

Query: 99  TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV---PGLVKLDMS 155
           T+L  + + +N LT +P L       L  L+++ N +  +     +        +     
Sbjct: 160 TSLEVLSVRNNQLTFLPELPES----LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR 215

Query: 156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRS 215
           E+R+ HI PE         +I L  N LS     S+               +      ++
Sbjct: 216 ENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 216 IKMWLADKKNVPVQPACTGPERLS--GKVFSDLHADDFACKPEIRMDSRYVEAVSSENAT 273
                         P     +          + HA+ F+   +   D+      S     
Sbjct: 275 TLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFRE- 333

Query: 274 VVCRVDSIPPAAISW 288
              +V +      + 
Sbjct: 334 ---QVAAWLEKLSAS 345

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 73.1 bits (179), Expect = 8e-14
 Identities = 32/171 (18%), Positives = 71/171 (41%), Gaps = 26/171 (15%)

Query: 35  RDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGA 94
           R++ +  + E   ++ +  L ++  NL  LP           +  L + +  +  +    
Sbjct: 46  RNEAVSLLKECLINQFS-ELQLNRLNLSSLPDNLPP-----QITVLEITQNALISLP--- 96

Query: 95  LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
            +   +L  +D  DN L+++P L       L+ L++  N ++ + +        L  ++ 
Sbjct: 97  -ELPASLEYLDACDNRLSTLPELPAS----LKHLDVDNNQLTMLPEL----PALLEYINA 147

Query: 155 SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
             ++L  + PE  T   SLE + +  N+L+  P    E    L  +++  N
Sbjct: 148 DNNQLTML-PELPT---SLEVLSVRNNQLTFLP----ELPESLEALDVSTN 190

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.5 bits (154), Expect = 9e-11
 Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 18/153 (11%)

Query: 54  LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDG-LTNLIEIDLSDNLLT 112
            +   N +     + F  +     +K  L   +  +  S   +  +    E+ L+   L+
Sbjct: 15  QNSFYNTISGTYADYF--SAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72

Query: 113 SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKS 172
           S+P         +  L + +N +  + +        L  LD  ++RL  + PE      S
Sbjct: 73  SLPDNLPPQ---ITVLEITQNALISLPEL----PASLEYLDACDNRLSTL-PELPA---S 121

Query: 173 LESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           L+ + ++ N+L+  P    E    L  I   +N
Sbjct: 122 LKHLDVDNNQLTMLP----ELPALLEYINADNN 150

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 8/89 (8%)

Query: 102 IEIDLSDNLLTSIPSLTFQSVRFLRDLNLA---RNPISKIEKGAFQFVPGLVKLDMSESR 158
           +  +   N ++   +  F +        L    RN    + K          +L ++   
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLN 70

Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFP 187
           L  + P+       +  +++  N L   P
Sbjct: 71  LSSL-PDNL--PPQITVLEITQNALISLP 96

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 74.8 bits (184), Expect = 1e-15
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 248 ADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRI 307
           A+     P I      V+A+  E AT +C V+S P   ISW  N  L+          R 
Sbjct: 1   AEKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFD-----TRY 55

Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG-IADANFTLQVTYR 356
            + E G       L + + ++SD G + C A N  G   ++   LQV  +
Sbjct: 56  SIRENG-----QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMK 100

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 13/101 (12%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           KP+I      V+ +    A + C     P  ++SW      L  N+      RI V+E G
Sbjct: 100 KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS------RIAVLESG 153

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANF-TLQV 353
                 SL + N Q+ D+G++ CVA+N  G A +    L+V
Sbjct: 154 ------SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 77.5 bits (191), Expect = 2e-15
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P+   +     +       + C V S PPA+I W  +  +L       +   +     G
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVL----PAKNTTNLKTYSTG 155

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
              RK  L +    ++D GR+ C A N  G     + L + 
Sbjct: 156 ---RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA 193

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGR-LLLNNTAFSSYQRIFVIEQ 312
           +P I +  +      +   T+VC  +  P   I+W              S   RI V  Q
Sbjct: 1   QPHI-IQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
                 SSL + + + SDSGR+ C A +R G    +  L + Y 
Sbjct: 60  H---GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA 100

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 70.9 bits (174), Expect = 2e-15
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P I              A + C+    P   ISW   G             R  + EQG
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDP-----RATIQEQG 62

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                 +L + N + SD+G + CVA + +G    +  L VT
Sbjct: 63  ------TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           KP+I   SR ++  +     +       P    +W                  + V  + 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALA------PELLVDAKS 55

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                +S+   +A+ +DSG +    +N  G  +A F + V
Sbjct: 56  S---TTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 70.5 bits (173), Expect = 4e-15
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
              S  +  +   V   P  A+ W++NG +L      S Y    +      E    L L 
Sbjct: 12  SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNE----SKYICTKIHVTNHTEYHGCLQLD 67

Query: 325 NAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
           N    ++G +  +A+N  G  +   +      
Sbjct: 68  NPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           +         +  +V  +P   +SWY NGR + ++       ++ V E+G +    SL+ 
Sbjct: 15  MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLH----KMIVSEKGLH----SLIF 66

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVT 354
              + SD+G + CVA+NRAG A     L V 
Sbjct: 67  EVVRASDAGAYACVAKNRAGEATFTVQLDVL 97

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 73.1 bits (179), Expect = 6e-15
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 2/102 (1%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
            P     S          A + C      PP+  SW+ +G  +L   A    +       
Sbjct: 104 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADA-KKTRAFMNSSF 162

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
               +   L+       DSG +YC A+N  G A  +    + 
Sbjct: 163 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 61.1 bits (148), Expect = 7e-11
 Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 5/103 (4%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           K  +      V+   +E+  + C         + W     +  + TA   Y         
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWK---FVQGSTTALVCYNSQITAPYA 57

Query: 314 EYERKS--SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           +    S   +  ++    D+G + C+     G      ++ +T
Sbjct: 58  DRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 69.8 bits (171), Expect = 6e-15
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEY 315
             +M+ R     ++      C     P   + W  NG+          Y+          
Sbjct: 10  TEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR-------- 61

Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
            +  SL++ +   SD G + CV EN  G  +  + L V
Sbjct: 62  NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 74.4 bits (183), Expect = 7e-15
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 9/99 (9%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P  R     VE +   +  + C +   PP  +SW+ + R L +        +  ++ +  
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK------KYKIMSENF 246

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
               +S+ + N   +D G + C A N  G      ++ +
Sbjct: 247 ---LTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 71.3 bits (175), Expect = 8e-14
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P   +    V+    E+ T  C V    P  I+W  + R +     +            
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLV------- 57

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
             E  ++L +    + D+G++ C A N AG    +  L V
Sbjct: 58  --ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 95

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 66.7 bits (163), Expect = 3e-12
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
           E+    C++   P   + WY +   +  +   S ++  FV           L + N    
Sbjct: 115 EHTRYECKIGGSPEIKVLWYKDETEIQES---SKFRMSFVESVA------VLEMYNLSVE 165

Query: 330 DSGRFYCVAENRAGIADANFTLQV 353
           DSG + C A N AG A ++ +L+V
Sbjct: 166 DSGDYTCEAHNAAGSASSSTSLKV 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.3 bits (183), Expect = 8e-15
 Identities = 34/154 (22%), Positives = 60/154 (38%), Gaps = 12/154 (7%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             L +  N ++ L   +     L  L+ L L    I  I+   L  L  L  + L +N +
Sbjct: 93  GWLFLDENKVKDL--SSL--KDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKI 146

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
           T I  L    +  L  L+L  N IS I       +  L  L +S++ +  +      G K
Sbjct: 147 TDITVL--SRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLRA--LAGLK 200

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           +L+ ++L      + P+     L+    ++  D 
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 28/162 (17%), Positives = 64/162 (39%), Gaps = 16/162 (9%)

Query: 46  PESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIE 103
            +    +    ++   ++     +      L ++ ++      I  +    +  L N+ +
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSVQ--GIQYLPNVTK 72

Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
           + L+ N LT I  L   +++ L  L L  N +  +   + + +  L  L +  + +  I+
Sbjct: 73  LFLNGNKLTDIKPLA--NLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDIN 128

Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
                    LES+ L  N+++   +  +  L KL  + L DN
Sbjct: 129 G--LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDN 166

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 10/133 (7%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + L +  N +  +       + L  L  L L    I  I    L GLT L  + LS N +
Sbjct: 137 ESLYLGNNKITDI--TVL--SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
           + + +L    ++ L  L L               +     +  ++  L  ++PE  +   
Sbjct: 191 SDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDG 246

Query: 172 SLESIKLNGNRLS 184
             E   +  +   
Sbjct: 247 DYEKPNVKWHLPE 259

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 72.0 bits (176), Expect = 8e-15
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 5/104 (4%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
            P ++           E A +VC+ +S+PP    +WY             S  R FV   
Sbjct: 83  PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 142

Query: 313 GEYERKSSLVLTNAQ-ESDSGRFYCVAENRAGIADANFTLQVTY 355
                +S L + N   E+D G++ C   +  G   A  TL+V  
Sbjct: 143 Q---GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 8/88 (9%), Positives = 17/88 (19%), Gaps = 21/88 (23%)

Query: 270 ENATVVCRVDSIPPAAISWYW--NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ 327
               + C ++          W   G +L  +                             
Sbjct: 14  SKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ----------------KTEFKVDS 57

Query: 328 ESDSGRFYCVAENRAGIADANFTLQVTY 355
           +   G + CV             +Q+  
Sbjct: 58  DDQWGEYSCVFLPEPM---GTANIQLHG 82

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 69.7 bits (171), Expect = 8e-15
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 8/100 (8%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           +P        +     +   + C+V  +P   +SW  +G+ +       S  ++ V E G
Sbjct: 9   RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRP----DSAHKMLVRENG 64

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
            +    SL++      D+G + C+A NRAG    +  L V
Sbjct: 65  VH----SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 71.7 bits (176), Expect = 1e-14
 Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 13/102 (12%)

Query: 254 KPEIRMD--SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
            P I M   S    A   E  T  CR    P  AISW+ NG+L+  N      ++  +  
Sbjct: 96  PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN------EKYILKG 149

Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                  + L + N   SD G + C A N+AG  +    LQV
Sbjct: 150 SN-----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 63.3 bits (154), Expect = 9e-12
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 12/92 (13%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
            E    E+A VVCRV S P  A+SW ++   +       S  R  ++         +L +
Sbjct: 12  QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT----ISDNRFAMLANN------NLQI 61

Query: 324 TNAQESDSGRFYCVAENRAG--IADANFTLQV 353
            N  +SD G + C     A   I   +  + V
Sbjct: 62  LNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 93

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 252 ACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
           A  P  + + R +      NAT+VC+V   P   + WY  G+ ++ +       RI   +
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD---GLKYRIQEFK 58

Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
            G +     L++ +  + D+  +   A N+ G      +L+V
Sbjct: 59  GGYH----QLIIASVTDDDATVYQVRATNQGGSVSGTASLEV 96

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 8/101 (7%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P+       V A+  E  ++       P   I+W     L+ NN          VI   
Sbjct: 104 LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNN------GHYQVIVTR 157

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            +   S +     +  D+G +   A+NR GI      L V 
Sbjct: 158 SF--TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P+++     V         + C V + P A ISW+ +G+LL      S+Y  I +     
Sbjct: 20  PKLQGPVA-VYTWEGNQVNITCEVFAYPSATISWFRDGQLL----PSSNYSNIKIYNTPS 74

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
               S L +T   E+D G + C A NR G     F L   
Sbjct: 75  ---ASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA 111

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.5 bits (185), Expect = 2e-14
 Identities = 31/162 (19%), Positives = 66/162 (40%), Gaps = 16/162 (9%)

Query: 46  PESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIE 103
           P+    +    ++   ++     +      L ++ ++      I  +    +  L N+ +
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSVQ--GIQYLPNVTK 69

Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
           + L+ N LT I  LT  +++ L  L L  N I  +   + + +  L  L +  + +  I+
Sbjct: 70  LFLNGNKLTDIKPLT--NLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDIN 125

Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
                    LES+ L  N+++   +  +  L KL  + L DN
Sbjct: 126 G--LVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDN 163

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.1 bits (171), Expect = 9e-13
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 10/156 (6%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + L +  N +  +         L  L+ L+L    I  I    L  LT L  + L DN +
Sbjct: 112 KSLSLEHNGISDI--NGL--VHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI 165

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
           + I  L    +  L++L L++N IS +   A   +  L  L++      +      +   
Sbjct: 166 SDIVPL--AGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW 207
              ++K     L    + S +   +   ++ H   +
Sbjct: 222 VPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEF 257

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 11/104 (10%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P IR               + C     P   I W  +G L+    +     RI  +E G 
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDS-----RIKQLENG- 62

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
                 L +  A+  D+GR+ C+A   +G A  +  ++V   GV
Sbjct: 63  -----VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGV 101

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 75.1 bits (184), Expect = 2e-14
 Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 8/107 (7%)

Query: 254 KPEIR---MDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFV 309
           K  I    M +  V     EN  ++   ++ P P    W +  R   +            
Sbjct: 310 KGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDK----WEDYPKS 365

Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
             +      S L LT  + ++ G +  +  N    A   F + V  +
Sbjct: 366 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK 412

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 68.5 bits (167), Expect = 3e-12
 Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 9/106 (8%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAF---SSYQRIFVI 310
           KPEI      +      N  + C     P   I WY+        +A       Q +   
Sbjct: 412 KPEI------LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSS 465

Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
                +      + ++    +G   C A N  G   A F       
Sbjct: 466 GPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN 511

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 67.4 bits (164), Expect = 5e-12
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           P + +          E  TV C +  +      +W            ++S+         
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH----GDF 267

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
            YER+++L +++A+ +DSG F C A N  G A+   TL+V  +G
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKG 311

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 48.1 bits (114), Expect = 6e-06
 Identities = 11/111 (9%), Positives = 31/111 (27%), Gaps = 13/111 (11%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
            ++ +  R +      +  V C + + P                       R        
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGC----QGKPLPKDLRFI------ 163

Query: 315 YERKSSLVLTNAQESDSGRFY-CVAENRAG-IADANFTLQVTYRGVGLPFL 363
            + K+ +++ + + +       C  +     +    F L+V      +P +
Sbjct: 164 PDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVV 214

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 8/90 (8%), Positives = 29/90 (32%), Gaps = 21/90 (23%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P I      +     +   ++C      P  + W +                   +++ 
Sbjct: 36  PPSIHPGKSDLIVRVGDEIRLLCTD----PGFVKWTFEI-----------------LDET 74

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG 343
              +++  +   A+ +++G++ C  ++   
Sbjct: 75  NENKQNEWITEKAEATNTGKYTCTNKHGLS 104

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 75.6 bits (185), Expect = 2e-14
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 11/100 (11%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P I  +         E+  V C     PP  I W+ +   L+ ++       I + +  
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS------GIVLKDGN 719

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                 +L +   ++ D G + C A +  G A       +
Sbjct: 720 -----RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 754

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 72.5 bits (177), Expect = 2e-13
 Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 17/106 (16%)

Query: 254 KPEIRMDSR---YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI 310
           KP +   S     VEA   E   +  +    PP  I WY NG  L +N            
Sbjct: 327 KPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESN------------ 374

Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
                +    L +    E D+G +  +  N       +  + +   
Sbjct: 375 --HTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY 418

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 65.5 bits (159), Expect = 3e-11
 Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 1/95 (1%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNG-RLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
           +E    E   + C   +     I + W        +    +            +  S+L 
Sbjct: 234 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT 293

Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
           +     SD G + C A +       +  ++V  + 
Sbjct: 294 IDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 328

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 63.2 bits (153), Expect = 2e-10
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 12/112 (10%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLL-----------NNTAFS 302
            PEI +    ++    E+ ++ C  D      ++WY  G   L                +
Sbjct: 550 GPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDT 608

Query: 303 SYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            ++    +          + L NA   D G + C+A++R          Q+T
Sbjct: 609 LWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLT 660

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 61.3 bits (148), Expect = 6e-10
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 10/101 (9%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P + +    +   ++    + CR        + W W            S QR+ V E  
Sbjct: 31  LPRLSIQKDILTIKANTTLQITCRGQ--RD--LDWLWPNNQS------GSEQRVEVTECS 80

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           +     +L +     +D+G + C        +     +Q  
Sbjct: 81  DGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDY 121

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 59.4 bits (143), Expect = 2e-09
 Identities = 12/115 (10%), Positives = 30/115 (26%), Gaps = 14/115 (12%)

Query: 242 VFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLNNT 299
           V+   +   F      +    Y+    ++   + C                  R + +  
Sbjct: 116 VYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGN 175

Query: 300 AFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
             S            ++ K    + +   S +G  +C A+       +   + V 
Sbjct: 176 RIS------------WDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 58.6 bits (141), Expect = 4e-09
 Identities = 27/129 (20%), Positives = 40/129 (31%), Gaps = 28/129 (21%)

Query: 254 KPEIR---MDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNN----------- 298
            P+I    + S           T+ C V +IP P  I WYW       N           
Sbjct: 420 PPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNP 479

Query: 299 ---------TAFSSYQRIFVIEQG----EYERKSSLVLTNAQESDSGRFYCVAENRAGIA 345
                      F    +I V +      E + K+   L     + S  + C A N+ G  
Sbjct: 480 YPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG 539

Query: 346 DANFTLQVT 354
           +   +  VT
Sbjct: 540 ERVISFHVT 548

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 68.2 bits (167), Expect = 3e-14
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 9/111 (8%)

Query: 243 FSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFS 302
               H+        I    R +     E+A   C  D  P   ++W   G++L  +    
Sbjct: 3   HHHHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTS---- 58

Query: 303 SYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
              R  V        KS+  +++ Q SD G +  V EN  G  +A FTL +
Sbjct: 59  --ARHQVTTTKY---KSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 71.0 bits (174), Expect = 4e-14
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 13/113 (11%)

Query: 248 ADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRI 307
               A  P I                + C+    P   I W  N   +  +         
Sbjct: 104 DKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSN------PR 157

Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFT-LQVTYRGVG 359
           + ++ G       L + N++E D G++ CVAEN  G   +  T L V  R VG
Sbjct: 158 YSLKDG------FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVG 204

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 7/101 (6%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           PEI    +         A+  C     PP +I W  NG+ +      S  Q  + + +  
Sbjct: 7   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKV------SGTQSRYTVLEQP 60

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIA-DANFTLQVT 354
                  +       D   + CVAEN  G A  A+ TL + 
Sbjct: 61  GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY 101

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 70.1 bits (172), Expect = 4e-14
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P IR + + V     E A + C++   P   I WY  G+ L+ +      ++  +   G
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS------RKYKMSSDG 60

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
              R  +L +   ++ D G + C+A N  G  + +  L +
Sbjct: 61  ---RTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLL 97

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 13/105 (12%)

Query: 254 KPEIRMDSRY---VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI 310
            P+                    +       P  A++W+   +LL N+      + I + 
Sbjct: 100 TPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNS------ENITIE 153

Query: 311 EQGEYERKSSLVLTNAQ-ESDSGRFYCVAENRAGIADANFTLQVT 354
                   + LV+ N Q ++ +G++     N  G  DA   +++ 
Sbjct: 154 NTE---HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 5e-14
 Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 13/155 (8%)

Query: 39  LITIPEAPESELT--QVLDMSGNNL--QILPKEAFRRAGLLNLQKLFLARCHIGQID--- 91
            +               LD+S N    +     A        LQ L L    +       
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 92  SGALDGLTNLIEIDLSDNLLTSIP-SLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLV 150
           S        L  +DLS N L     + +      L  LNL+   + ++ KG       L 
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---KLS 277

Query: 151 KLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
            LD+S +RL+            + ++ L GN    
Sbjct: 278 VLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 26/146 (17%), Positives = 42/146 (28%), Gaps = 10/146 (6%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLL--NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
            +L++   +              L   L+ L +A+ H        +     L  +DLSDN
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183

Query: 110 LLTSIPSLTFQSVRF----LRDLNLARNPISKIEKGAFQFV---PGLVKLDMSESRLEHI 162
                  L           L+ L L    +                L  LD+S + L   
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

Query: 163 -SPEAFTGAKSLESIKLNGNRLSHFP 187
               +      L S+ L+   L   P
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGLKQVP 269

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 15/163 (9%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHI----GQIDSGALDGLTNLIEIDLS 107
           +VL ++  +      E  R      L  L L+        G I +        L  + L 
Sbjct: 152 KVLSIAQAHSLNFSCEQVRV--FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR 209

Query: 108 DNLLTSIPSLTFQSVRF---LRDLNLARNPISKI-EKGAFQFVPGLVKLDMSESRLEHIS 163
           +  + +   +          L+ L+L+ N +       +  +   L  L++S + L+ + 
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269

Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
                    L  + L+ NRL   P  S + L ++  + L  NP
Sbjct: 270 KGLPA---KLSVLDLSYNRLDRNP--SPDELPQVGNLSLKGNP 307

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.1 bits (135), Expect = 9e-09
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           Q LD+S N+L+              L  L L+   + Q+  G       L  +DLS N L
Sbjct: 231 QGLDLSHNSLRDAAGAPSC-DWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRL 286

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIE 139
              PS     +  + +L+L  NP    E
Sbjct: 287 DRNPS--PDELPQVGNLSLKGNPFLDSE 312

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 30/162 (18%), Positives = 71/162 (43%), Gaps = 16/162 (9%)

Query: 46  PESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIE 103
           P+  L     +    +N+     +A     L  +  L      +  I+   +  L NLI 
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVTQA----DLDGITTLSAFGTGVTTIE--GVQYLNNLIG 67

Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
           ++L DN +T +  L   ++  + +L L+ NP+  +   A   +  +  LD++ +++  ++
Sbjct: 68  LELKDNQITDLAPLK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVT 123

Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           P    G  +L+ + L+ N++++     +  L  L  + + + 
Sbjct: 124 P--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNA 161

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 12/154 (7%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + LD++   +  +       AGL NLQ L+L    I  I    L GLTNL  + + +  +
Sbjct: 110 KTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQV 163

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
           + +  L   ++  L  L    N IS I       +P L+++ +  +++  +SP       
Sbjct: 164 SDLTPL--ANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP--LANTS 217

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           +L  + L    +++ PV     L+   +++    
Sbjct: 218 NLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSG 251

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 70.2 bits (172), Expect = 5e-14
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 7/100 (7%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P I M  +      +  AT++C     P   I+W+ +   +  +      +++     G 
Sbjct: 109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG- 167

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQV 353
                +L +  ++ESD G++ CVA N AG    A   L V
Sbjct: 168 -----ALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 61.0 bits (148), Expect = 8e-11
 Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 7/101 (6%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P           VS   A+ +C+    P   I W   G+ + N        R  VIE  
Sbjct: 6   PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQ-------RFEVIEFD 58

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           +       +       D   + CVA N  G    +  L V 
Sbjct: 59  DGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVL 99

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 14/174 (8%)

Query: 41  TIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTN 100
           +      S   Q+   +G  L+         A       L L    + Q        L++
Sbjct: 48  SAWRQANSNNPQIETRTGRALKATADL-LEDATQPGRVALELRSVPLPQFPD-QAFRLSH 105

Query: 101 LIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSE-SRL 159
           L  + +    L  +P  T Q    L  L LARNP+  +   +   +  L +L +     L
Sbjct: 106 LQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPEL 163

Query: 160 EHI--------SPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
             +        +     G  +L+S++L    +   P  S+  L  L  +++ ++
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNS 216

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.3 bits (147), Expect = 4e-10
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 17/165 (10%)

Query: 52  QVLDMSGNN-LQILPKE------AFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEI 104
           + L +     L  LP+       +    GL+NLQ L L    I  + +  +  L NL  +
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSL 211

Query: 105 DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEK--GAFQFVPGLVKLDMSE-SRLEH 161
            + ++ L+++       +  L +L+L     + +      F     L +L + + S L  
Sbjct: 212 KIRNSPLSALGP-AIHHLPKLEELDLRGC--TALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 162 ISPEAFTGAKSLESIKLNGN-RLSHFPVRSVEPLLKLMMIELHDN 205
           + P        LE + L G   LS  P   +  L    +I +  +
Sbjct: 269 L-PLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCIILVPPH 311

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 71.8 bits (176), Expect = 5e-14
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 254 KPEIRMDSRYVEAVSSENATVV--CRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
            P ++     V A ++   +V   C  D  P   +SW  +G  + N       ++    +
Sbjct: 194 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE--EDDEKHIFSD 251

Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
                  S L + N  ++D   + C+AEN+AG  DA+  L+V  +
Sbjct: 252 DS-----SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 65.7 bits (160), Expect = 7e-12
 Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           K   +      E    E+A +VC V S  P  I W   GR ++         R  V+   
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI----LKKDVRFIVLSNN 155

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG--IADANFTLQV 353
                  L +   +++D G + C     A   I   +  + V
Sbjct: 156 ------YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 56.0 bits (135), Expect = 9e-09
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWY-WNGRLLLNNTAFSSYQRIFVIEQ 312
            ++ +     E    E+   +C+V        ISW+  NG  L  N      QRI V+  
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ-----QRISVVWN 57

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAG-IADANFTLQV 353
            +    S+L + NA   D+G + CV     G  ++A   +++
Sbjct: 58  DD--DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 74.2 bits (182), Expect = 6e-14
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 8/118 (6%)

Query: 246 LHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQ 305
           L        P IR   +        +  + C     P   ISW  +G+ + N    +   
Sbjct: 421 LKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN----NDRY 476

Query: 306 RIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFL 363
           ++        +  S L +T+   +D G + C+A+++ G+A+ +  L V     GLP++
Sbjct: 477 QVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY----GLPYI 530

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 71.9 bits (176), Expect = 3e-13
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P   ++          +A V C+ D  P   ++W                     +E+G 
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEG- 773

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL 351
                +L + N Q+++ G + C A N  G   +   +
Sbjct: 774 -----TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 19/101 (18%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
               ++D           A   C+    P   +SW  +G+ + ++               
Sbjct: 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--------------- 387

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
               +S L + + ++ D G + C   N    A+A+  L++ 
Sbjct: 388 ----ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLG 424

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 63.8 bits (155), Expect = 9e-11
 Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 7/92 (7%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
                S    ++C     P     WY          A     R+        +   +L++
Sbjct: 258 KTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRV-------KQVSGTLII 310

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
            +A   DSG++ CV  N  G       L VT 
Sbjct: 311 KDAVVEDSGKYLCVVNNSVGGESVETVLTVTA 342

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 62.3 bits (151), Expect = 3e-10
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 15/112 (13%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P IR        V+ E   V C V   P  +I W  + R L  N      ++  V   G
Sbjct: 527 LPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPIN------RKQKVFPNG 579

Query: 314 EYERKSSLVLTNAQ-ESDSGRFYCVAENRAG-IADANFTLQVTYRGVGLPFL 363
                 +L++ N +  SD   + CVA+N+ G  A  +  +QV      +PF 
Sbjct: 580 ------TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFA 625

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 61.9 bits (150), Expect = 4e-10
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 264 VEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
             A   +  T+ C V     P  I W  +G+ +  +          V  +G     S L 
Sbjct: 629 GPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISED---LGITTSRVGRRG-----SVLT 680

Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           +   + S +G F C A N AG       L V 
Sbjct: 681 IEAVEASHAGNFTCHARNLAGHQQFTTPLNVY 712

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           ++  +S  A + C+    P   I W  +    + +          +   G+         
Sbjct: 49  IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD----VPGLRQISSDGKLVFPPFRAE 104

Query: 324 TNAQESDSGRFYCVAENRAGIADA-NFTLQVTYR 356
              QE  +  + C+A N+ G   + +  ++    
Sbjct: 105 DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 138

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 11/108 (10%)

Query: 240 GKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSI---PPAAISWYWNGRLLL 296
           G + S               D      +   +A + C + S        +SW+ +     
Sbjct: 124 GSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENY 183

Query: 297 NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS-GRFYCVAENRAG 343
              A     +  V+  G       L +      D    + C  ++R  
Sbjct: 184 FPGAEYD-GKYLVLPSG------ELHIREVGPEDGYKSYQCRTKHRLT 224

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 70.7 bits (173), Expect = 6e-14
 Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 8/106 (7%)

Query: 258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYER 317
           +M+ R     ++      C     P   + W  NG+               V  Q     
Sbjct: 23  KMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE---HRIGGYKVRNQH---- 75

Query: 318 KSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFL 363
             SL++ +   SD G + CV EN  G  +  + L V  R    P L
Sbjct: 76  -WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPIL 120

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 68.0 bits (166), Expect = 4e-13
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 2/93 (2%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEY--ERKSSL 321
              V   +   VC+V S     I W  +     +         + V++           L
Sbjct: 128 ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVL 187

Query: 322 VLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            L N  E+D+G + C   N  G A+ +  L V 
Sbjct: 188 ALFNVTEADAGEYICKVSNYIGQANQSAWLTVL 220

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 66.9 bits (163), Expect = 7e-14
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 9/107 (8%)

Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPA---AISWYWNGRLLLNNTAFSSYQRI 307
           F  +P+        E     + T   RV          + W+    + L++      Q  
Sbjct: 7   FVMRPQD------GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60

Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
              ++        L +T+AQ + +G + C    +     +NF L V 
Sbjct: 61  DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.7 bits (179), Expect = 8e-14
 Identities = 34/192 (17%), Positives = 68/192 (35%), Gaps = 36/192 (18%)

Query: 30  QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ 89
           +++   +  L  +PE         +    N+L+ LP         L+L+ +      + +
Sbjct: 176 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL------PLSLESIVAGNNILEE 229

Query: 90  IDSGALDGLTNLIEIDLSDNLLTSIP-------SLTFQSVRF---------LRDLNLARN 133
           +    L  L  L  I   +NLL ++P       +L  +             L  L+++ N
Sbjct: 230 LPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287

Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEP 193
             S +     +  P L  L+ S + +  +         SLE + ++ N+L   P      
Sbjct: 288 IFSGLS----ELPPNLYYLNASSNEIRSLCDL----PPSLEELNVSNNKLIELP----AL 335

Query: 194 LLKLMMIELHDN 205
             +L  +    N
Sbjct: 336 PPRLERLIASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 29/182 (15%), Positives = 60/182 (32%), Gaps = 35/182 (19%)

Query: 39  LITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
              + E P + L   L+ S N ++ L           +L++L ++   + ++ +      
Sbjct: 289 FSGLSELPPN-LYY-LNASSNEIRSLCDL------PPSLEELNVSNNKLIELPAL----P 336

Query: 99  TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQ-------------- 144
             L  +  S N L  +P L       L+ L++  NP+ +                     
Sbjct: 337 PRLERLIASFNHLAEVPELPQN----LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP 392

Query: 145 -FVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELH 203
                L +L +  + L            S+E +++N  R+      + E   KL      
Sbjct: 393 ELPQNLKQLHVETNPLREFPDIPE----SVEDLRMNSERVVDPYEFAHETTDKLEDDVFE 448

Query: 204 DN 205
            +
Sbjct: 449 HH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 26/169 (15%)

Query: 39  LITIPEAPESELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD 96
           L  +PE P+S L    V + +   L  LP           L+ L ++   + ++    L 
Sbjct: 103 LTELPELPQS-LKSLLVDNNNLKALSDLPP---------LLEYLGVSNNQLEKLPE--LQ 150

Query: 97  GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSE 156
             + L  ID+ +N L  +P L       L  +    N + ++ +   Q +P L  +    
Sbjct: 151 NSSFLKIIDVDNNSLKKLPDLPPS----LEFIAAGNNQLEELPE--LQNLPFLTAIYADN 204

Query: 157 SRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           + L+ +         SLESI    N L   P   ++ L  L  I   +N
Sbjct: 205 NSLKKLPDLPL----SLESIVAGNNILEELP--ELQNLPFLTTIYADNN 247

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 31/162 (19%)

Query: 39  LITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL 98
           + ++ + P S L   L++S N L  LP           L++L  +  H+ ++        
Sbjct: 309 IRSLCDLPPS-LE-ELNVSNNKLIELPAL------PPRLERLIASFNHLAEVPEL----P 356

Query: 99  TNLIEIDLSDNLLTSIPSLTFQ---------------SVRFLRDLNLARNPISKIEKGAF 143
            NL ++ +  N L   P +                    + L+ L++  NP+ +      
Sbjct: 357 QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE 416

Query: 144 QFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH 185
                +  L M+  R+      A      LE      +   H
Sbjct: 417 S----VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 37/192 (19%), Positives = 73/192 (38%), Gaps = 39/192 (20%)

Query: 30  QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ 89
           + +  RD +L  +PE P+S LT  LD+S N    L +         NL  L  +   I  
Sbjct: 260 EALNVRDNYLTDLPELPQS-LTF-LDVSENIFSGLSEL------PPNLYYLNASSNEIRS 311

Query: 90  IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
           +     D   +L E+++S+N L  +P+L  +    L  L  + N ++++ +        L
Sbjct: 312 LC----DLPPSLEELNVSNNKLIELPALPPR----LERLIASFNHLAEVPEL----PQNL 359

Query: 150 VKLDMSESRLEHISPE---------------AFTGAKSLESIKLNGNRLSHFPVRSVEPL 194
            +L +  + L                          ++L+ + +  N L  FP    +  
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP----DIP 415

Query: 195 LKLMMIELHDNP 206
             +  + ++   
Sbjct: 416 ESVEDLRMNSER 427

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.9 bits (156), Expect = 7e-11
 Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 30/177 (16%)

Query: 43  PEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDGL--- 98
           P    +   Q      +NL  +P EA     + +  + + A          G  +     
Sbjct: 5   PRNVSNTFLQEPLRHSSNLTEMPVEAEN---VKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 99  ---------TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
                        E++L++  L+S+P L       L  L  + N ++++ +        L
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPH----LESLVASCNSLTELPEL----PQSL 113

Query: 150 VKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
             L +  + L+ +S         LE + ++ N+L   P   ++    L +I++ +N 
Sbjct: 114 KSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNS 164

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 18/158 (11%)

Query: 48  SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS 107
           SE  +         + +     R        +L L    +  +     +   +L  +  S
Sbjct: 44  SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP----ELPPHLESLVAS 99

Query: 108 DNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAF 167
            N LT +P L  QS++ L   N     +S +        P L  L +S ++LE + PE  
Sbjct: 100 CNSLTELPEL-PQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKL-PE-L 149

Query: 168 TGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
             +  L+ I ++ N L   P    +    L  I   +N
Sbjct: 150 QNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNN 183

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 73.3 bits (180), Expect = 9e-14
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P  R     VE +   +  + C +   PP  +SW+ + R L +        +  ++ + 
Sbjct: 384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK------KYKIMSEN 437

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                +S+ + N   +D G + C A N  G      ++ + 
Sbjct: 438 ---FLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 16/100 (16%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P        +  V  E   +   ++   P +++W+ +   ++  +       I++    
Sbjct: 477 PPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES-----DNIWISYSE 531

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                ++L  + A+ +++G++ C  +N AG  +   TL V
Sbjct: 532 ---NIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 9/108 (8%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P       +VEA   E  T+ C+VD  P   I+WY     L +  A+    +        
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFK-------- 57

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPF 362
               +SLV+     SD G + C AEN  G   ++  L +  R +   F
Sbjct: 58  -NNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSF 104

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 9/104 (8%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P      + V           CR++   P  +SWY +G LL ++       +   I    
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANL----QTSFIHNV- 156

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
               ++L +    +S  G++ C A N  G A ++  L ++   V
Sbjct: 157 ----ATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEV 196

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 67.9 bits (166), Expect = 4e-12
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 9/85 (10%)

Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
           E+    C++   P   + WY +   +  +   S ++  FV      E  + L + N    
Sbjct: 307 EHTRYECKIGGSPEIKVLWYKDETEIQES---SKFRMSFV------ESVAVLEMYNLSVE 357

Query: 330 DSGRFYCVAENRAGIADANFTLQVT 354
           DSG + C A N AG A ++ +L+V 
Sbjct: 358 DSGDYTCEAHNAAGSASSSTSLKVK 382

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 67.1 bits (164), Expect = 6e-12
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 9/108 (8%)

Query: 246 LHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQ 305
           L   +    P   +    V+    E+ T  C V    P  I+W  + R +          
Sbjct: 189 LTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRP----GGNY 244

Query: 306 RIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           ++ ++E       ++L +    + D+G++ C A N AG    +  L V
Sbjct: 245 KMTLVENT-----ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 5/89 (5%)

Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
           E        +   V   PP  + W  NG+ L      S    +   ++GE      L+  
Sbjct: 16  EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRE----SKIIHVEYYQEGEISE-GCLLFN 70

Query: 325 NAQESDSGRFYCVAENRAGIADANFTLQV 353
                ++G +  +A+N  G A+       
Sbjct: 71  KPTHYNNGNYTLIAKNPLGTANQTINGHF 99

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 70.0 bits (171), Expect = 1e-13
 Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           +PE RMD + +   ++      C     P  +ISW  NGR           +        
Sbjct: 16  RPE-RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR------ 68

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFL 363
              ++ SLV+ +   SD G + CV EN+ G     +TL V  R    P L
Sbjct: 69  --HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPIL 116

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 66.1 bits (161), Expect = 3e-12
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERK---SS 320
             AV   +    C+V S     I W  +  +  +         + V++    E       
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183

Query: 321 LVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           L L N  E D G + C A N  G+A+  F L V
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSV 216

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P+I    R       ++A + C+    P     W      +    + SS  R F+I + 
Sbjct: 92  APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSS-GRFFIINKE 150

Query: 314 EYERKSSLVLTNAQ-ESDSGRFYCVAENRAGIADANFTLQV 353
                + L + N Q   D G + C A N  G A  +  L+V
Sbjct: 151 ---NYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 17/102 (16%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLNNTAFSSYQRIFVIE 311
           +P I      +   S    T+ C + S     +  YW  NG  L                
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT------------- 49

Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
             +        +   +  DSG ++CV  +      AN T++V
Sbjct: 50  -RKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEV 89

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 70.5 bits (172), Expect = 1e-13
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
              + +++        EN T++C V         W +  +     +          +   
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRK----ESGRLVEPVTDFLLDM 236

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            Y  +S L + +A+  DSG + C              + +T
Sbjct: 237 PYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 15/95 (15%)

Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
               + C       A + W    +           Q +   + G +   S L LTN    
Sbjct: 16  STFVLTCSGS----APVVWERMSQEPP--------QEMAKAQDGTF--SSVLTLTNLTGL 61

Query: 330 DSGRFYCVAENRAGIADANF-TLQVTYRGVGLPFL 363
           D+G ++C   +  G+       L +      + FL
Sbjct: 62  DTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFL 96

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 11/100 (11%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P I  +         E+  V C     PP  I W+ +   L+ +          V++ G
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED-------SGIVLKDG 62

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                 +L +   ++ D G + C A +  G A       +
Sbjct: 63  N----RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII 98

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 15/100 (15%), Positives = 36/100 (36%), Gaps = 14/100 (14%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
               ++         +   + CR+     + I+W  +G  L  +       R  +     
Sbjct: 4   GSSGVEVESFLVHPGDLLQLRCRLRDDVQS-INWLRDGVQLAES------NRTRI----- 51

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                 + + ++  +DSG + CV  + +G     F++ V+
Sbjct: 52  --TGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 71.6 bits (175), Expect = 2e-13
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 10/99 (10%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
                ++  VE   S + T+   VD+    +  W +    L     F    R        
Sbjct: 49  SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR-------- 100

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                S+V+    E+ +G +    ++ A      FT+ +
Sbjct: 101 --GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 65.9 bits (160), Expect = 1e-11
 Identities = 18/102 (17%), Positives = 28/102 (27%), Gaps = 15/102 (14%)

Query: 254 KPEIRMD--SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
           K  I     S   E    E      R  + P    +W ++ +                 E
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC-------------E 370

Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           Q   +   S+      +   G +   AEN        FTL +
Sbjct: 371 QKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNI 412

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 54.7 bits (131), Expect = 5e-08
 Identities = 10/106 (9%), Positives = 28/106 (26%), Gaps = 7/106 (6%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
               +     +     E   + C+         ++W    + L     F           
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS---TN 283

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
               R     +++   +D+G + C +         +  + +  +G 
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKGF 326

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
                +   Y   + ++   +VC  +S+P   + W                +   V+++ 
Sbjct: 140 TLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGE----SCKEESPAVVKKE 194

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQV 353
           E       VL     +D     C A N  G      FT+ +
Sbjct: 195 E------KVLHELFGTD---IRCCARNELGRECTRLFTIDL 226

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 19/154 (12%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             L  + NN+  L       +   NL  L      +  +D   +  LT L  ++   N L
Sbjct: 67  TKLICTSNNITTLD-----LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKL 118

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
           T +          L  LN ARN +++I+         L +LD   ++   I+    T   
Sbjct: 119 TKLDVSQNPL---LTYLNCARNTLTEIDVSHN---TQLTELDCHLNKK--ITKLDVTPQT 170

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
            L ++  + N+++      V     L  +    N
Sbjct: 171 QLTTLDCSFNKITELD---VSQNKLLNRLNCDTN 201

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 30/174 (17%), Positives = 52/174 (29%), Gaps = 36/174 (20%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             L+   NN+  L          + L  L  +   + +ID   +  LT L   D S N L
Sbjct: 194 NRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPL 245

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIE-------------------KGAFQFVPGLVKL 152
           T +   T      L  L+  +  + +I+                   +        L  L
Sbjct: 246 TELDVSTLSK---LTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL 302

Query: 153 DMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP 206
           D   + +  +     +    L  + LN   L+   V       KL  +   +  
Sbjct: 303 DCQAAGITELD---LSQNPKLVYLYLNNTELTELDVSH---NTKLKSLSCVNAH 350

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.8 bits (166), Expect = 4e-12
 Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 20/162 (12%)

Query: 46  PESELTQV--LDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIE 103
            E +L  +  LD   +++  +         L  L KL     +I  +D   L   TNL  
Sbjct: 37  SEEQLATLTSLDCHNSSITDMT--GI--EKLTGLTKLICTSNNITTLD---LSQNTNLTY 89

Query: 104 IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS 163
           +    N LT++          L  LN   N ++K++       P L  L+ + + L  I 
Sbjct: 90  LACDSNKLTNLDVTPLTK---LTYLNCDTNKLTKLDVSQN---PLLTYLNCARNTLTEID 143

Query: 164 PEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
               +    L  +  + N+        V P  +L  ++   N
Sbjct: 144 ---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.0 bits (164), Expect = 7e-12
 Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 19/154 (12%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             L    N L  L         L  L  L      + ++D         L  ++ + N L
Sbjct: 88  TYLACDSNKLTNLDV-----TPLTKLTYLNCDTNKLTKLDVS---QNPLLTYLNCARNTL 139

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
           T I          L +L+   N    I K        L  LD S +++  +     +  K
Sbjct: 140 TEIDVSHNTQ---LTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITELD---VSQNK 191

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
            L  +  + N ++   +      ++L  ++   N
Sbjct: 192 LLNRLNCDTNNITKLDLNQ---NIQLTFLDCSSN 222

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 11/131 (8%)

Query: 76  NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
           N      A   +   D+ + + L  L  +D  ++ +T +  +   +   L  L    N I
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLT--GLTKLICTSNNI 76

Query: 136 SKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL 195
           + ++         L  L    ++L ++     T    L  +  + N+L+   V       
Sbjct: 77  TTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQ---NP 127

Query: 196 KLMMIELHDNP 206
            L  +    N 
Sbjct: 128 LLTYLNCARNT 138

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 15/145 (10%)

Query: 48  SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS 107
           +  TQ++       + + +          L  L      I ++D   L     L+ + L+
Sbjct: 272 THNTQLIYFQAEGCRKIKELDV--THNTQLYLLDCQAAGITELD---LSQNPKLVYLYLN 326

Query: 108 DNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAF 167
           +  LT +          L+ L+     I      +   +P L     +E +   +  E  
Sbjct: 327 NTELTELDVSHNTK---LKSLSCVNAHIQDFS--SVGKIPALNNNFEAEGQTITMPKETL 381

Query: 168 -----TGAKSLESIKLNGNRLSHFP 187
                T A S + +   GN ++  P
Sbjct: 382 TNNSLTIAVSPDLLDQFGNPMNIEP 406

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 25/190 (13%), Positives = 55/190 (28%), Gaps = 33/190 (17%)

Query: 34  CRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRR-----------------AGLLN 76
           C    L  +  +    LT  L+ + N L  +      +                      
Sbjct: 113 CDTNKLTKLDVSQNPLLTY-LNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQ 171

Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPIS 136
           L  L  +   I ++D   +     L  ++   N +T +          L  L+ + N ++
Sbjct: 172 LTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLDLNQNIQ---LTFLDCSSNKLT 225

Query: 137 KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK 196
           +I+      +  L   D S + L  +     +    L ++      L    +       +
Sbjct: 226 EID---VTPLTQLTYFDCSVNPLTELDVSTLS---KLTTLHCIQTDLLEIDLTH---NTQ 276

Query: 197 LMMIELHDNP 206
           L+  +     
Sbjct: 277 LIYFQAEGCR 286

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 66.2 bits (161), Expect = 2e-13
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 9/107 (8%)

Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAA---ISWYWNGRLLLNNTAFSSYQRI 307
           F  KP+             E+ T + +V +        I W+    + L + A    Q  
Sbjct: 10  FIEKPQG------GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLK 63

Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
              E+        + +  A+++ +G + C    +      +F L+V 
Sbjct: 64  ETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 68.4 bits (167), Expect = 2e-13
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 3/102 (2%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
            P     +    A     A + C   D  PP+  +W+ +G ++  N   +          
Sbjct: 107 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 166

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                   LV      SD+G + C A N  G    +  +++ 
Sbjct: 167 --NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 59.6 bits (144), Expect = 3e-10
 Identities = 7/101 (6%), Positives = 29/101 (28%), Gaps = 1/101 (0%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
              +      V    +    + C         + W ++         +++       ++ 
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            +   + +   +    D+G + C+     G +     +++ 
Sbjct: 64  TFLP-TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 68.2 bits (167), Expect = 3e-13
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 6/112 (5%)

Query: 74  LLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN 133
           L   + L L+  +I +I S  L G+ NL  + L  NL+  I +L       L +L ++ N
Sbjct: 47  LKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYN 103

Query: 134 PISKIEKGAFQFVPGLVKLDMSESRLEHISP-EAFTGAKSLESIKLNGNRLS 184
            I+ +     + +  L  L MS +++ +    +       LE + L GN L 
Sbjct: 104 QIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 66.6 bits (163), Expect = 8e-13
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 7/129 (5%)

Query: 79  KLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKI 138
           +L      I ++D+  L  L     + LS N +  I SL    +  LR L+L RN I KI
Sbjct: 29  ELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKISSL--SGMENLRILSLGRNLIKKI 85

Query: 139 EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP-VRSVEPLLKL 197
           E         L +L +S +++  +S        +L  + ++ N+++++  +  +  L KL
Sbjct: 86  E-NLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142

Query: 198 MMIELHDNP 206
             + L  NP
Sbjct: 143 EDLLLAGNP 151

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 24/117 (20%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLN----LQKLFLARCHIGQIDSGALDGLTNLIEIDLS 107
           ++L +  N ++ +         L      L++L+++   I  +    ++ L NL  + +S
Sbjct: 73  RILSLGRNLIKKIE-------NLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMS 123

Query: 108 DNLLTSIPSL-TFQSVRFLRDLNLARNPISKIEKGAFQF----------VPGLVKLD 153
           +N +T+   +    ++  L DL LA NP+    K               +P L KLD
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 67.9 bits (166), Expect = 3e-13
 Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           K   +      E    E+A +VC V S  P  I W   GR ++         R  V+   
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI----LKKDVRFIVLSNN 155

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                  L +   +++D G + C     A        +QV 
Sbjct: 156 ------YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 61.8 bits (150), Expect = 4e-11
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWY-WNGRLLLNNTAFSSYQRIFVIEQ 312
            ++ +     E    E+   +C+V        ISW+  NG  L  N      QRI V+  
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ-----QRISVVWN 57

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAG-IADANFTLQV 353
            +    S+L + NA   D+G + CV     G  ++A   +++
Sbjct: 58  DD--DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 12/100 (12%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P        + A  S +    C V   P   ++W  NG +++ +          ++    
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPS------DYFQIVGGS- 365

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                +L +    +SD G + CVAEN AG A ++  L V 
Sbjct: 366 -----NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 69.5 bits (170), Expect = 8e-13
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 10/107 (9%)

Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI 310
            A        +  + A   +   + C V   P   I W  N + L          R+ V+
Sbjct: 118 VAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDL---NPIPGDSRVVVL 174

Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQVTYR 356
             G      +L ++  Q  DSG + C A N A     N   +++   
Sbjct: 175 PSG------ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSD 215

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           V A+  ++A + C V   PP + +W     ++   +      +  ++         +L++
Sbjct: 231 VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSK-----KYSLLGGS------NLLI 279

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
           +N  + DSG + CV   +     A+  L V
Sbjct: 280 SNVTDDDSGTYTCVVTYKNENISASAELTV 309

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 8/105 (7%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
                 +      +   N  + C  +S      I W  +G +L    A     R   +  
Sbjct: 21  SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLIL----ALGMDDRKQQLPN 76

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAG--IADANFTLQVTY 355
           G      +++ +   + D G + C A       I      + V  
Sbjct: 77  GSL-LIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 64.4 bits (157), Expect = 4e-13
 Identities = 15/100 (15%), Positives = 39/100 (39%), Gaps = 14/100 (14%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
             + ++   +     +   + CR+      +I+W  +G  L+ +       R  +     
Sbjct: 10  WGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVES------NRTRI----- 57

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                 + + ++  +DSG + CV  + +G     F++ V+
Sbjct: 58  --TGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 65.8 bits (160), Expect = 4e-13
 Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 4/108 (3%)

Query: 252 ACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAF----SSYQRI 307
           +            +     +  + C     P   I W++ G+   +  +     +   R+
Sbjct: 19  SHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78

Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
            +         S++ +    E D+G + C A N           +V +
Sbjct: 79  HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKW 126

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 67.4 bits (165), Expect = 4e-13
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 9/100 (9%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P      + +         +  RV  IP   + +Y +G  + ++          + ++G
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSS------LDFQISQEG 156

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           +     SL++  A   DSG +   A N  G A +   L V
Sbjct: 157 DL---YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 7/104 (6%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P      + V  +    AT    +   P   +SW+ +G+++  +   +          G 
Sbjct: 6   PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS---TLPGVQISFSDGR 62

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
                 L +    +++SGR+   A N +G A +   L V     
Sbjct: 63  A----KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA 102

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 69.4 bits (169), Expect = 4e-13
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           P + +          +  TVVC +  +       W        +          +     
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIA--QVKHNSWHRGDF 246

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
            YER+ +L +++A+  DSG F C A N  G A+   TL+V  +G
Sbjct: 247 NYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 13/112 (11%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWY-WNGRLLLNNTAFSSYQRIFVIEQ 312
             ++ +    +      +A V C +     +  S    +G+ L  +  F           
Sbjct: 91  PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVP--------- 141

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQVTYRGVGLPFL 363
               +    +    +        C A+          FTL+V      +P +
Sbjct: 142 --NPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVV 191

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 69.1 bits (169), Expect = 4e-13
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
              +   S    A   E  T  CR    P  AISW+ NG+L+  N      ++  +    
Sbjct: 194 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN------EKYILKGSN 247

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                + L + N   SD G + C A N+AG  +    LQV
Sbjct: 248 -----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 65.2 bits (159), Expect = 8e-12
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
            ++ +    VE    E+    C     P +   +   G  +++       QR+ V ++G 
Sbjct: 5   LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIIST------QRVVVQKEGV 58

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQV 353
              +S L + NA   D+G + C A +  G    A   L++
Sbjct: 59  ---RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 95

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 62.5 bits (152), Expect = 7e-11
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 12/102 (11%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           K   R      E    E+A VVCRV S P  A+SW ++   +       S  R  ++   
Sbjct: 98  KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT----ISDNRFAMLANN 153

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG--IADANFTLQV 353
                 +L + N  +SD G + C     A   I   +  + V
Sbjct: 154 ------NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 189

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 69.2 bits (169), Expect = 5e-13
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P+I+++   +  +  E A +VC   +           G   L     S +Q  +      
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNY------ 240

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           Y++  +L L      D+G + CVA N  G   A    QV
Sbjct: 241 YKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 15/100 (15%), Positives = 24/100 (24%), Gaps = 18/100 (18%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P I      +     E  T+ C  +     ++ W             S           
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPG--------- 50

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                S+L   NA   ++G + C              L V
Sbjct: 51  -----STLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV 85

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 53.0 bits (127), Expect = 8e-08
 Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 13/109 (11%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
               + ++ V  V  + A + C + D     ++S    G   +           F     
Sbjct: 90  HSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQV-----LRKTVYFFSPWR 144

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRA-GIADANFTLQVTYRGVGLP 361
                   ++  A+  DS  + C               L+V       P
Sbjct: 145 ------GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPP 187

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 65.1 bits (159), Expect = 5e-13
 Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 247 HADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQR 306
           H+ +    P      +  + +  ++  + C++ +IPP  + W  N  ++  N   +    
Sbjct: 8   HSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFN---TDRIS 64

Query: 307 IFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           ++    G      +L++ +  + D+G +   A N AG+   N  L VT
Sbjct: 65  LYQDNTGRV----TLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 64.7 bits (158), Expect = 5e-13
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P+I       +  + E+  +  +V    P   +W    + +  +      + + V     
Sbjct: 8   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES------EHMKVENSEN 61

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
               S L +  A++   G +  + EN+ G   A   L V 
Sbjct: 62  ---GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 64.7 bits (157), Expect = 5e-13
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 3/110 (2%)

Query: 246 LHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWN-GRLLLNNTAFSSY 304
              DDF   P+I +      A+   + +  C   S   + +++ W      L +    +Y
Sbjct: 3   FVCDDFPX-PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENY 61

Query: 305 QRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQV 353
             +        E  + L L N + +  G + CV  N  G + +    L +
Sbjct: 62  AHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 69.3 bits (169), Expect = 6e-13
 Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEY 315
             RMD + +   ++      C     P  +ISW  NGR             I +  Q   
Sbjct: 125 PERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE---HRIGGIKLRHQQ-- 179

Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFL 363
               SLV+ +   SD G + CV EN+ G     +TL V  R    P L
Sbjct: 180 ---WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPIL 224

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 64.6 bits (157), Expect = 2e-11
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERK----S 319
             AV   +    C+V S     I W  +  +  +         + V++            
Sbjct: 232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291

Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            L L N    D+G + C+A N  G +  +  L V 
Sbjct: 292 VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
                    +   S +   + C      P     W  +G  L+ +      +R+ V    
Sbjct: 9   GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPS------ERVLV---- 58

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                  L + NA   DSG + C       +   +F+++VT
Sbjct: 59  ---GPQRLQVLNASHEDSGAYSCRQRLTQRVL-CHFSVRVT 95

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 69.0 bits (169), Expect = 6e-13
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 7/103 (6%)

Query: 252 ACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
           A  P  + + R +      NAT+VC+V   P   + WY  G+ ++ +       RI   +
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD---GLKYRIQEFK 58

Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            G       L++ +  + D+  +   A N+ G      +L+V 
Sbjct: 59  GG----YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 8/100 (8%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P+       V A+  E  ++       P   I+W     L+ NN          VI    
Sbjct: 105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG------HYQVIVTRS 158

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           +   S +     +  D+G +   A+NR GI      L V 
Sbjct: 159 F--TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 63.8 bits (156), Expect = 6e-13
 Identities = 22/99 (22%), Positives = 31/99 (31%), Gaps = 8/99 (8%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P+I    +        +A    RV   P     WY NG  +  +     Y      E   
Sbjct: 6   PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP----EDNV 61

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                 LV+ +    DS      A N AG   ++  L V
Sbjct: 62  C----ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 70.1 bits (171), Expect = 7e-13
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 10/99 (10%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
                ++  VE   S + T+   VD+    +  W +    L     F    R        
Sbjct: 49  SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNR-------- 100

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                S+V+    E+ +G +    ++ A      FT+ +
Sbjct: 101 --GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSI 137

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 69.0 bits (168), Expect = 2e-12
 Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 15/105 (14%)

Query: 254 KPEIRMDS--RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
           K  I   +     E    E      R  + P    +W ++ +                 E
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC-------------E 370

Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
           Q   +   S+      +   G +   AEN        FTL +  +
Sbjct: 371 QKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK 415

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 61.3 bits (148), Expect = 5e-10
 Identities = 13/120 (10%), Positives = 38/120 (31%), Gaps = 9/120 (7%)

Query: 240 GKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNN 298
           G+  + L   D    P+  +   +++    E   + C+         ++W    + L   
Sbjct: 215 GRECTRLFTIDLNQTPQTTLPQLFLKV--GEPLWIRCKAVHVNHGFGLTWELENKALEEG 272

Query: 299 TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
                ++           R     +++   +D+G + C +         +  + +  +G 
Sbjct: 273 N---YFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKGF 326

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 59.7 bits (144), Expect = 1e-09
 Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 10/103 (9%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW-NGRLLLNNTAFSSYQRIFVIEQ 312
           KP++           +  +   C  D  P  + +W   + +        +         +
Sbjct: 415 KPQVL--------AEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANR 466

Query: 313 GEYER-KSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
             + +  SS  L  ++        C A N  G +     L   
Sbjct: 467 KVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSP 509

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 14/104 (13%), Positives = 25/104 (24%), Gaps = 15/104 (14%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
                +   Y   + ++   +VC  +S+P   + W                       + 
Sbjct: 140 TLLYTLRRPYFRKMENQ-DALVCISESVPEPIVEWVLCDSQGE-------------SCKE 185

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADA-NFTLQVTYR 356
           E             E       C A N  G      FT+ +   
Sbjct: 186 ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQT 229

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 70.0 bits (171), Expect = 9e-13
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 20/100 (20%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
            +  +   Y       N ++ C   S PPA  SW  +G +  +                 
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT---------------- 425

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                 L ++N  E +SG + C A N A          +T
Sbjct: 426 ----QELFISNITEKNSGLYTCQANNSASGHSRTTVKTIT 461

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 68.1 bits (166), Expect = 4e-12
 Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 20/100 (20%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
               +       +S  N  + C   S P    SW  NG    +                 
Sbjct: 560 DTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT---------------- 603

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                 L +     +++G + C   N A   + +    +T
Sbjct: 604 ----QVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 60.4 bits (146), Expect = 1e-09
 Identities = 21/103 (20%), Positives = 30/103 (29%), Gaps = 22/103 (21%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
               +        S EN  + C   S PPA  SW+ NG    +                 
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST---------------- 247

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIA--DANFTLQVTY 355
                 L + N   ++SG + C A N           T+ V  
Sbjct: 248 ----QELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYA 286

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 58.8 bits (142), Expect = 3e-09
 Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 13/102 (12%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
                 +        +     C  ++   A   W+ N + L          R+ +     
Sbjct: 112 KPSISSNNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSL------PVSPRLQLSNGN- 163

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQVTY 355
                +L L N   +D+  + C  +N        +  L V Y
Sbjct: 164 ----RTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLY 201

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 57.3 bits (138), Expect = 9e-09
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 13/88 (14%)

Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
           +     C  ++       W+ NG+ L  +       R+ +          +L L N   +
Sbjct: 483 DAVAFTCEPEAQNTT-YLWWVNGQSLPVS------PRLQLSNGN-----RTLTLFNVTRN 530

Query: 330 DSGRFYCVAENRAGIADAN-FTLQVTYR 356
           D+  + C  +N      ++  TL V Y 
Sbjct: 531 DARAYVCGIQNSVSANRSDPVTLDVLYG 558

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 12/98 (12%), Positives = 29/98 (29%), Gaps = 7/98 (7%)

Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEY 315
           ++ ++S        +   ++           SWY   R+  N               G  
Sbjct: 1   KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60

Query: 316 ERK-------SSLVLTNAQESDSGRFYCVAENRAGIAD 346
                     +SL++ N  ++D+G +         + +
Sbjct: 61  YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNE 98

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 51.5 bits (123), Expect = 6e-07
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 13/94 (13%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
                 +   + C  +        W+ N + L  +       R+ +          +L L
Sbjct: 299 NPVEDEDAVALTCEPEI-QNTTYLWWVNNQSLPVSP------RLQLSNDN-----RTLTL 346

Query: 324 TNAQESDSGRFYCVAENRAGIADAN-FTLQVTYR 356
            +   +D G + C  +N   +  ++   L V Y 
Sbjct: 347 LSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG 380

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 26/105 (24%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 250 DFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFV 309
                P I +  R       +N   +  V S P A + WY NG  L  ++          
Sbjct: 4   TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN---- 59

Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
              G      +L + +    DSG +  V  N  G A    TL VT
Sbjct: 60  -TSGVL----TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
             +      V     +   + C V   PP  +SW  N + L ++   +           E
Sbjct: 223 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKF--------E 274

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
             R +   +     +DSG++  V +N+ G   ++FT+ V
Sbjct: 275 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 60.3 bits (146), Expect = 5e-10
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 264 VEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
            E     N  + C+V +I     I WY + R +  +            + G      +L+
Sbjct: 16  WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD-------EKHDFKDG----ICTLL 64

Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           +T   + D+G +  + ++  G   +   L  
Sbjct: 65  ITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 95

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 19/110 (17%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSI----------PPAAISWYWNGRLLLNNTAFSS 303
             E+ M+     A+S+ +  +    + I              ++W  NG  +  +     
Sbjct: 98  FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYS----- 152

Query: 304 YQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
             R+     G    +  L +     +D G++     +          L  
Sbjct: 153 -DRVKTGVTG---EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 198

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
               S   A    +    P     W  +G+ +          +  + E         L +
Sbjct: 16  TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQG------GKYKLSEDKG---GFFLEI 66

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
                SDSG + C  +N AG   ++  L +
Sbjct: 67  HKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 9/119 (7%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLL 75
           CPS C C     +  + C++  L ++P   P     Q L ++ N +  L    F    L+
Sbjct: 6   CPSQCSC----DQTLVNCQNIRLASVPAGIPTD--KQRLWLNNNQITKLEPGVFDH--LV 57

Query: 76  NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
           NLQ+L+     +  I +G  D LT L ++DL+DN L SIP   F +++ L  + L  NP
Sbjct: 58  NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 24/114 (21%)

Query: 99  TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
           T+   + L++N +T +    F  +  L+ L    N ++ I  G F  +  L +LD++++ 
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCN 212
           L+ I   AF             + L             L  I L++NPW C+C 
Sbjct: 93  LKSIPRGAF-------------DNLK-----------SLTHIYLYNNPWDCECR 122

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 67.7 bits (165), Expect = 1e-12
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 8/104 (7%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           P + +    +  +  E A +VC   S+     +    N   L          +       
Sbjct: 187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAI-------PQQSDFHNN 239

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
            Y++  +L L       +G + CVA N  G    +   +V    
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA 283

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 15/101 (14%)

Query: 264 VEAVSSENATVVCRV-DSIPPAAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSL 321
           V     ++A + C + D +  A +S     GR L+ +T                      
Sbjct: 99  VVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHT------NYSFSPWH------GF 146

Query: 322 VLTNAQESDSGRFYCVAENRAGIAD-ANFTLQVTYRGVGLP 361
            +  A+   S  + C A          +  L+V     G P
Sbjct: 147 TIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPP 187

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 15/100 (15%), Positives = 24/100 (24%), Gaps = 18/100 (18%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P I      +        T+ C  +     ++ W                    +   G
Sbjct: 4   IPVIEPSVPELVVKPGATVTLRCVGN----GSVEWDGPPS-----------PHWTLYSDG 48

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                S L   NA   ++G + C          A   L V
Sbjct: 49  SS---SILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 13/112 (11%)

Query: 246 LHADDFACKPEIRMDSRYVEAVSS---ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFS 302
           +   + A  P+IR+     +       E   +V      P   + W   G  L  +    
Sbjct: 13  VTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS---- 68

Query: 303 SYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
              R+ V      +  +   +  A  SDSG +    +       A   ++V 
Sbjct: 69  ---RVHVRT---SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 9/134 (6%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + L ++  +           +GL NL++L +    +       L GLT+L  +D+S +  
Sbjct: 69  KDLTINNIHATNY--NPI--SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 112 TSIPSLTFQSVRFLRDLNLARNP-ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA 170
                    ++  +  ++L+ N  I+ I     + +P L  L++    +           
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYRG--IEDF 180

Query: 171 KSLESIKLNGNRLS 184
             L  +      + 
Sbjct: 181 PKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 18/135 (13%), Positives = 46/135 (34%), Gaps = 7/135 (5%)

Query: 72  AGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLA 131
           +         L +     I    ++ LT +    L++  +T +  +  +    ++DL + 
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYI---TLANINVTDLTGI--EYAHNIKDLTIN 74

Query: 132 RNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSV 191
               +         +  L +L +    +        +G  SL  + ++ +      +  +
Sbjct: 75  NIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 192 EPLLKLMMIELHDNP 206
             L K+  I+L  N 
Sbjct: 133 NTLPKVNSIDLSYNG 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 9/95 (9%)

Query: 48  SELT--QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCH-IGQIDSGALDGLTNLIEI 104
           S LT   +LD+S +              L  +  + L+    I  I    L  L  L  +
Sbjct: 109 SGLTSLTLLDISHSAHDDSILTKI--NTLPKVNSIDLSYNGAITDIM--PLKTLPELKSL 164

Query: 105 DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIE 139
           ++  + +     +  +    L  L      I   +
Sbjct: 165 NIQFDGVHDYRGI--EDFPKLNQLYAFSQTIGGKK 197

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 14/102 (13%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           + + R +   V     E A + C+     P   ISW  +G  L +            I  
Sbjct: 111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD------ERITIRG 164

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANF-TLQV 353
           G       L++T  ++SD+G++ CV  N  G  ++    L V
Sbjct: 165 G------KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV 200

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 61.7 bits (150), Expect = 4e-11
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P I      +     E AT+ C+ +  P   I WY  G  +  +       R+ +    
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG-IADANFTLQVTY 355
            +     +V       D G + CVA N  G     + +L+V  
Sbjct: 69  LFF--LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAI 109

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P    + + +     E+  +VCR +  P   + W  NG  L +    +       +   
Sbjct: 312 APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQS----APPNPNREVAGD 367

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                 +++  + Q S    + C   N  G   AN  + V
Sbjct: 368 ------TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 58.0 bits (140), Expect = 4e-09
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 12/90 (13%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
              +   +  + C    +P   I+WY  G  L ++       +             +L +
Sbjct: 232 QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSD-------KAKFENFN-----KALRI 279

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
           TN  E DSG ++C+A N+ G      +++V
Sbjct: 280 TNVSEEDSGEYFCLASNKMGSIRHTISVRV 309

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 17/93 (18%), Positives = 24/93 (25%), Gaps = 6/93 (6%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
                 +N  + C     P  +  W  N R           +       G          
Sbjct: 27  HIVDPRDNILIECEAKGNPAPSFHWTRNSRFF---NIAKDPRVSMRRRSGTLV--IDFRS 81

Query: 324 TNAQESDSGRFYCVAENRAGIAD-ANFTLQVTY 355
               E   G + C A N+ G A      LQV+ 
Sbjct: 82  GGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 13/82 (15%), Positives = 21/82 (25%), Gaps = 13/82 (15%)

Query: 264 VEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
           V        T+ C     +P   I W  +    +        +R+     G       L 
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQD-----KRVSQGHNG------DLY 174

Query: 323 LTNAQESDS-GRFYCVAENRAG 343
            +N    D    + C A     
Sbjct: 175 FSNVMLQDMQTDYSCNARFHFT 196

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 65.7 bits (160), Expect = 2e-12
 Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 10/109 (9%)

Query: 254 KPEIRMDSRYVEAVSSENATVVC-RVDSIPPAAISWYWNGRLL--LNNTAFSSYQRIFVI 310
           + + R++ +       E A + C     IP   + W  +G  L  L   +F +  R+ ++
Sbjct: 108 RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167

Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANF-TLQVTYRGV 358
           + G      +L+++N +  D G + C+A+N  G  ++++  L V  +  
Sbjct: 168 DGG------NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAA 210

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 61.0 bits (148), Expect = 8e-11
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P I      +    +E AT+ C+V+  P   I W+ +G  +  N            + G
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTN---EKKSHRVQFKDG 65

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG-IADANFTLQVTY 355
                    +   +E D G ++CVA+NR G     + +LQ+  
Sbjct: 66  A--LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV 106

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
                 ++  +  RV   P   +SW  N + +  +    + +     E G       L +
Sbjct: 15  QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEA----EGGLC----RLRI 66

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
             A+  D+G + C A N  G       L+V
Sbjct: 67  LAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P I M  +      +  AT++C     P   I+W+ +   +  +   +S  RI  +  G 
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPS---ASNGRIKQLRSG- 164

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGI---ADANFTLQV 353
                +L + +++E+D G++ CVA N AG+   + AN  ++V
Sbjct: 165 -----ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRV 201

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 63.7 bits (155), Expect = 4e-11
 Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 15/99 (15%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P   +     E +   N  + C     P   + W      L                  +
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPE---------------D 250

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                  VL      DS  + CVA +  G+ +A   + V
Sbjct: 251 DMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITV 289

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 9/101 (8%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P    + +    VS   A+ VC+    P   ++W   G+ + +          F    G
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ---RFETIEFDESAG 62

Query: 314 EYERKSSLVLTNAQ-ESDSGRFYCVAENRAGIADANFTLQV 353
                + L +   +   D   + CVA+N  G    +  L V
Sbjct: 63  -----AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 8/100 (8%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
            ++      +     +   + C V+ +    I W  +G ++ N            I   E
Sbjct: 3   LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLY-------IPVSE 55

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIA-DANFTLQV 353
                 L L + + SD+GR++C  E+           L V
Sbjct: 56  QHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTV 95

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 20/101 (19%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           P   ++ + +    +    + C     P P  I W+     +                  
Sbjct: 99  PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-------------- 144

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQV 353
                S  VL     + S  F C A N  G+A +   T+ +
Sbjct: 145 ----PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 7/91 (7%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
            +       T  CRV   P   I W+ +G+ +      S +  I     G      SL  
Sbjct: 18  YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPK---SDHYTIQRDLDGTC----SLHT 70

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           T +   D G +  +A N  G       L V 
Sbjct: 71  TASTLDDDGNYTIMAANPQGRISCTGRLMVQ 101

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 64.9 bits (158), Expect = 4e-12
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 8/99 (8%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
             +      V     +   + C V   PP  +SW  N + L      +           E
Sbjct: 118 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKF--------E 169

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
             R +   +     +DSG++  V +N+ G   ++FT+ V
Sbjct: 170 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 59.1 bits (143), Expect = 4e-10
 Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 19/100 (19%)

Query: 264 VEAVSSENATVVCRVDSI----------PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
             A+S+ +  +    + I              ++W  NG  +          R+     G
Sbjct: 3   SIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAI------RYSDRVKTGVTG 56

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           E   +  L +     +D G++     +          L  
Sbjct: 57  E---QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 93

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 62.3 bits (151), Expect = 6e-12
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
            AV   +  +   VD  P  ++ W +NG +L   +    +         E  R   L L 
Sbjct: 11  TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFI--FTEFLEPAANETVRHGCLRLN 68

Query: 325 NAQESDSGRFYCVAENRAGIADANFTLQV 353
                ++G +  +A N  G A A+     
Sbjct: 69  QPTHVNNGNYTLLAANPFGQASASIMAAF 97

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 61.7 bits (149), Expect = 7e-12
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 1/94 (1%)

Query: 261 SRYVEAVSSENATVVCRVDSIPPAAISWYWN-GRLLLNNTAFSSYQRIFVIEQGEYERKS 319
           S  +E    E   + C   +     I + W        +    +            +  S
Sbjct: 15  SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74

Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           +L +     SD G + C A +       +  ++V
Sbjct: 75  TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 108

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.1 bits (163), Expect = 8e-12
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 76  NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
           +++ L LA   +  +    L+ L  +  +DLS N L ++P     ++R L  L  + N +
Sbjct: 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNAL 498

Query: 136 SKIEKGAFQFVPGLVKLDMSESRLEHIS-PEAFTGAKSLESIKLNGNRLSHFP 187
             ++      +P L +L +  +RL+  +  +       L  + L GN L    
Sbjct: 499 ENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.4 bits (156), Expect = 6e-11
 Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 16/173 (9%)

Query: 43  PEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKL--------FLARCHIGQIDSGA 94
           PE     LT +L M    L  L  E         L+ +           R      +S  
Sbjct: 379 PENKWCLLTIILLM--RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL 436

Query: 95  LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
                ++  + L+   LT +  L  + +  +  L+L+ N +  +       +  L  L  
Sbjct: 437 KMEYADVRVLHLAHKDLTVLCHL--EQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQA 493

Query: 155 SESRLEHISPEAFTGAKSLESIKLNGNRLSHFP-VRSVEPLLKLMMIELHDNP 206
           S++ LE++          L+ + L  NRL     ++ +    +L+++ L  N 
Sbjct: 494 SDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             LD+S N L+ LP      A L  L+ L  +   +  +D   +  L  L E+ L +N L
Sbjct: 466 THLDLSHNRLRALPPA---LAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRL 520

Query: 112 TSIPSL-TFQSVRFLRDLNLARNPISKIE---KGAFQFVPGLVKLD 153
               ++    S   L  LNL  N + + E   +   + +P +  + 
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 64.1 bits (156), Expect = 9e-12
 Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 19/104 (18%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           K +I ++    + +      + C     P     W+ N   L + T              
Sbjct: 118 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------------- 163

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQVTYR 356
               K   ++        G ++C   N     D+    + +   
Sbjct: 164 ----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 203

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 19/102 (18%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
            +I ++      ++ +   + CR    P     W+   + +                   
Sbjct: 19  SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI------------------P 60

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQVTY 355
               S L+       D+G + C   N           L V  
Sbjct: 61  NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCD 102

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 63.7 bits (154), Expect = 1e-11
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 1/94 (1%)

Query: 261 SRYVEAVSSENATVVCRVDSIPPAAISWYWN-GRLLLNNTAFSSYQRIFVIEQGEYERKS 319
           S  +E    E   + C   +     I + W        +    +            +  S
Sbjct: 112 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 171

Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           +L +     SD G + C A +       +  ++V
Sbjct: 172 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 49.4 bits (117), Expect = 7e-07
 Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 16/106 (15%)

Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW---NGRLLLNNTAFSSYQRI 307
           F      +    Y+    ++   + C   SI    +S        R + +    S     
Sbjct: 6   FIASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRIS----- 59

Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                  ++ K    + +   S +G  +C A+       +   + V
Sbjct: 60  -------WDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVV 98

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 1e-11
 Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 15/167 (8%)

Query: 46  PESELT--QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDGLTNL 101
             S     + LD+S NN    +P           LQ L ++   + G   S A+   T L
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIP--FL--GDCSALQHLDISGNKLSGDF-SRAISTCTEL 249

Query: 102 IEIDLSDNLLT-SIPSLTFQSVRFLRDLNLARNPIS-KIEKGAFQFVPGLVKLDMSESRL 159
             +++S N     IP L  +S   L+ L+LA N  + +I          L  LD+S +  
Sbjct: 250 KLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306

Query: 160 EHISPEAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELHDN 205
               P  F     LES+ L+ N  S   P+ ++  +  L +++L  N
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.9 bits (164), Expect = 1e-11
 Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 13/161 (8%)

Query: 52  QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDGLTNLIEIDLSDN 109
           ++L++S N     +P    +     +LQ L LA     G+I          L  +DLS N
Sbjct: 250 KLLNISSNQFVGPIPPLPLK-----SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 110 LLT-SIPSLTFQSVRFLRDLNLARNPIS-KIEKGAFQFVPGLVKLDMSESRLE-HISPEA 166
               ++P   F S   L  L L+ N  S ++       + GL  LD+S +     +    
Sbjct: 305 HFYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363

Query: 167 FTGAKSLESIKLNGNRLS-HFPVR-SVEPLLKLMMIELHDN 205
              + SL ++ L+ N  S          P   L  + L +N
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 4e-10
 Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 12/152 (7%)

Query: 41  TIPEAPESELT--QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALD 96
            IP+           LD+SGN+    +P           L+ L L+  +  G++    L 
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS---CSLLESLALSSNNFSGELPMDTLL 340

Query: 97  GLTNLIEIDLSDNLLT-SIPSLTFQSVRFLRDLNLARNPIS-KIEKGAFQFV-PGLVKLD 153
            +  L  +DLS N  +  +P         L  L+L+ N  S  I     Q     L +L 
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400

Query: 154 MSESRLE-HISPEAFTGAKSLESIKLNGNRLS 184
           +  +     I P   +    L S+ L+ N LS
Sbjct: 401 LQNNGFTGKI-PPTLSNCSELVSLHLSFNYLS 431

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.8 bits (151), Expect = 4e-10
 Identities = 33/173 (19%), Positives = 68/173 (39%), Gaps = 15/173 (8%)

Query: 41  TIPEAPESELTQVLDMSGNNL--QILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDG 97
           ++     S     LD+S N+L   +    +        L+ L ++   +           
Sbjct: 92  SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS--CSGLKFLNVSSNTLDFPGKVSGGLK 149

Query: 98  LTNLIEIDLSDNLLT-SIPS--LTFQSVRFLRDLNLARNPIS-KIEKGAFQFVPGLVKLD 153
           L +L  +DLS N ++ +     +       L+ L ++ N IS  ++         L  LD
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC---VNLEFLD 206

Query: 154 MSESRLEHISPEAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELHDN 205
           +S +      P       +L+ + ++GN+LS  F  R++    +L ++ +  N
Sbjct: 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSN 257

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.7 bits (148), Expect = 8e-10
 Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 21/177 (11%)

Query: 41  TIPEAPESELT--QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQI-DSGAL 95
            +P     ++   +VLD+S N     LP+         +L  L L+  +  G I  +   
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN--LSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 96  DGLTNLIEIDLSDNLLT-SIPSLTFQSVRFLRDLNLARNPISKIEKGA----FQFVPGLV 150
           +    L E+ L +N  T  IP  T  +   L  L+L+ N +S    G        +  L 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLS----GTIPSSLGSLSKLR 445

Query: 151 KLDMSESRLE-HISPEAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELHDN 205
            L +  + LE  I P+     K+LE++ L+ N L+   P   +     L  I L +N
Sbjct: 446 DLKLWLNMLEGEI-PQELMYVKTLETLILDFNDLTGEIP-SGLSNCTNLNWISLSNN 500

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 16/162 (9%)

Query: 52  QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQI-DSGALDGLTNLIEIDLSD 108
           + L +S +++   +           +L  L L+R  + G +    +L   + L  +++S 
Sbjct: 80  ESLFLSNSHINGSVSGF----KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSS 135

Query: 109 NLLT-SIPSLTFQSVRFLRDLNLARNPISK---IEKGAFQFVPGLVKLDMSESRLEHISP 164
           N L           +  L  L+L+ N IS    +          L  L +S +++     
Sbjct: 136 NTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195

Query: 165 EAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELHDN 205
              +   +LE + ++ N  S   P   +     L  +++  N
Sbjct: 196 --VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGN 233

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 1e-05
 Identities = 28/157 (17%), Positives = 47/157 (29%), Gaps = 10/157 (6%)

Query: 52  QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDGLTNLIEIDLSDN 109
             + +S N L   +PK   R   L NL  L L+     G I    L    +LI +DL+ N
Sbjct: 493 NWISLSNNRLTGEIPKWIGR---LENLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTN 548

Query: 110 LLT-SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFT 168
           L   +IP+            N          K              +    + I  E   
Sbjct: 549 LFNGTIPA-AMFKQSGKIAANFIAGKRYVYIKNDGMK--KECHGAGNLLEFQGIRSEQLN 605

Query: 169 GAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
              +     +           + +    +M +++  N
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 11/138 (7%)

Query: 75  LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLT-SIPSLTFQSVRFLRDLNLARN 133
           ++L    L       + S +L  LT L  + LS++ +  S+    F+    L  L+L+RN
Sbjct: 55  IDLSSKPL-NVGFSAVSS-SLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRN 110

Query: 134 PISKI--EKGAFQFVPGLVKLDMSESRLE-HISPEAFTGAKSLESIKLNGNRLS---HFP 187
            +S       +     GL  L++S + L+            SLE + L+ N +S      
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 188 VRSVEPLLKLMMIELHDN 205
               +   +L  + +  N
Sbjct: 171 WVLSDGCGELKHLAISGN 188

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 3e-04
 Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 10/144 (6%)

Query: 46  PESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEID 105
           P +   Q   ++ N +        +  G+               I S  L+ L+     +
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614

Query: 106 LSDNLLT-SIPSLTFQSVRFLRDLNLARNPIS-KI--EKGAFQFVPGLVKLDMSESRLE- 160
           ++  +        TF +   +  L+++ N +S  I  E G+      L  L++  + +  
Sbjct: 615 ITSRVYGGHTSP-TFDNNGSMMFLDMSYNMLSGYIPKEIGSMP---YLFILNLGHNDISG 670

Query: 161 HISPEAFTGAKSLESIKLNGNRLS 184
            I P+     + L  + L+ N+L 
Sbjct: 671 SI-PDEVGDLRGLNILDLSSNKLD 693

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           +P+        EA    +    C     P  A+ W  +G+ L +            +  G
Sbjct: 294 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQ-------NRIEVSGG 346

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                  L  +     DSG + CVAEN+ G   A+  L V
Sbjct: 347 ------ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
            + + E  + E  T+ CR  + PPA   W  NG  L          R   +  G      
Sbjct: 13  HTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTEL----KMGPDSRY-RLVAG-----D 62

Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADA-NFTLQVTYRG 357
            ++    +  D+G + CVA N  G   +   +L+  +  
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQ 101

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 53.7 bits (129), Expect = 8e-08
 Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 10/96 (10%)

Query: 264 VEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
           V+          C      P  +  W  N          +  +R      G      +L 
Sbjct: 111 VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIP---ADGRRFVSQTTG------NLY 161

Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
           +   + SD G + C A +       +   + +   +
Sbjct: 162 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSL 197

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 15/90 (16%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
             A++ +  T+ C     P   I W        +    S                  L +
Sbjct: 217 TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSE---------------PLLHI 261

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
            N    D G + C AEN  G       + +
Sbjct: 262 QNVDFEDEGTYECEAENIKGRDTYQGRIII 291

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + L      L  +      +  L  L+KL L+   +        +   NL  ++LS N +
Sbjct: 45  EFLSTINVGLTSI--ANLPK--LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 112 TSIPSLT-FQSVRFLRDLNLARNPISKIE---KGAFQFVPGLVKLD 153
             + ++   + +  L+ L+L    ++ +    +  F+ +P L  LD
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 76  NLQKLFLARCHIGQIDS-GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
           ++++L L      +    G  D    L  +   +  LTSI +L    +  L+ L L+ N 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANL--PKLNKLKKLELSDNR 75

Query: 135 ISKIEKGAFQFVPGLVKLDMSESRLEHIS-PEAFTGAKSLESIKLNGNRLSHFP 187
           +S   +   +  P L  L++S ++++ +S  E     ++L+S+ L    +++  
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 48  SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS 107
           S++ + L +  +       E         L+ L      +  I +  L  L  L +++LS
Sbjct: 17  SDVKE-LVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELS 72

Query: 108 DNLLTSIPSLTFQSVRFLRDLNLARNPISKIE 139
           DN ++    +  +    L  LNL+ N I  + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 13/99 (13%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
            +I +  + V A+  +N T+ C     P   I W      + +    S+           
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGA-------- 165

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                 L + N Q  D G + C AEN  G       + V
Sbjct: 166 -----VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 11/92 (11%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLNNTAFSSYQRIFVIEQGEYERKSSL 321
           V     +   ++C      P  +S+ W  N   +      +  +R FV +        +L
Sbjct: 18  VRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVF----ITMDKRRFVSQTN-----GNL 68

Query: 322 VLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
            + N + SD G + C   + +           
Sbjct: 69  YIANVEASDKGNYSCFVSSPSITKSVFSKFIP 100

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 13/100 (13%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           +P        +     E+    C+ +  P     W  NG  LL         RI +    
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTR------DRIQI---- 344

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
               + +L +T    SD+G + CVAEN+ G+  ++  L V
Sbjct: 345 ---EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 14/95 (14%)

Query: 261 SRYVEAVSSENATVVCRVDSIPPAAISWY-WNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
              V A       + C     P   I W   +G+ +                        
Sbjct: 212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNG------------- 258

Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            L + N Q+ D+G + CVAEN  G   A   L   
Sbjct: 259 ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY 293

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 12/81 (14%)

Query: 264 VEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
           V     +   ++C         + +W +N      +      +R    E G      +L 
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDN-----RRFVSQETG------NLY 160

Query: 323 LTNAQESDSGRFYCVAENRAG 343
           +   ++SD G + CV  N   
Sbjct: 161 IAKVEKSDVGNYTCVVTNTVT 181

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 13/98 (13%)

Query: 260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
              +      +   + C V   P   I W  NG  +            + +  G      
Sbjct: 14  HVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGM-----DFRYSVVDG------ 62

Query: 320 SLVLTN-AQESDSGRFYCVAENRAGIADA-NFTLQVTY 355
           SL++ N  +  D+G + C+A N  G   +    LQ  Y
Sbjct: 63  SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAY 100

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 61.0 bits (148), Expect = 3e-11
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 249 DDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIF 308
           +    KP        +E V    A   C+V+  P   + W+ +   +  +  F    +I 
Sbjct: 36  EKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHF----QID 91

Query: 309 VIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
             E+G      SL ++     D  ++ C A N  G A     L V
Sbjct: 92  YDEEGNC----SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 253 CKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
             P      +    +  ++  + C V   P   I+W  NG+ +    +          E 
Sbjct: 10  VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST--------CEA 61

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           G       L + +A   D G + C+AEN  G    +  + V
Sbjct: 62  GVA----ELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 14/90 (15%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           +     ++ T+ C+V  +P   + W  N + L       S  R  V +       S LV+
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-------SGGRATVTD-------SGLVI 364

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
              +  D G + C A N  G       +QV
Sbjct: 365 KGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 12/104 (11%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
            P ++     V    +    + C ++        SW  +G+          +      ++
Sbjct: 6   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNW----QEHNAALRKDE 61

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQVTY 355
           G      SLV    Q SD G + C AE  AG+A     + + TY
Sbjct: 62  G------SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTY 99

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 8/102 (7%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           +P  +  S+ + A + +   + C   S P    +++ NG+ +  N           I + 
Sbjct: 212 EPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGN-------PEDRITRH 264

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQVT 354
                  L+       D G + C  +N  G    +   L V 
Sbjct: 265 NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 306

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 11/109 (10%)

Query: 240 GKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNN 298
           G   S + +            +     +      + C + ++ P   I+W         N
Sbjct: 86  GVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPN 145

Query: 299 TAFSSY-QRIFVIEQGEYERKSSLVLTNAQE---SDSGRFYCVAENRAG 343
              + + +RI     G      +L  T   +   SD  ++ C A+N A 
Sbjct: 146 ADVTDFDRRITAGPDG------NLYFTIVTKEDVSDIYKYVCTAKNAAV 188

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 63.6 bits (154), Expect = 3e-11
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 4/94 (4%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERK---SS 320
           +E        ++C V         W WNG ++  +          V       R    + 
Sbjct: 219 MEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITV 278

Query: 321 LVLTNAQESDSGRFY-CVAENRAGIADANFTLQV 353
           L ++  +       + C A+N  GI  A   L  
Sbjct: 279 LNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 62.4 bits (151), Expect = 9e-11
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 10/106 (9%)

Query: 258 RMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYE 316
           R +   + + ++E     C ++       I+WY +      +T      RI       ++
Sbjct: 9   REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVST--EQASRI-------HQ 59

Query: 317 RKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPF 362
            K  L    A+  DSG +YCV  N +       + +       L +
Sbjct: 60  HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCY 105

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 50.5 bits (120), Expect = 8e-07
 Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 20/115 (17%)

Query: 253 CKPEIRMDSRYVEAVSSENATVVC------RVDSIPPAAISWYWNGRLLLNNTAFSSYQR 306
           C     +  + +    + +  +VC      + ++     + WY + + LL +        
Sbjct: 104 CYNAQAIFKQKLPV--AGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN------I 155

Query: 307 IFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLP 361
            F   +        L++ N  E   G + C A           T  + +  +   
Sbjct: 156 HFSGVKD------RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN 204

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 264 VEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
                  +   VC++++      ++WY+  R L N+  +         E G       L 
Sbjct: 11  AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYE-----ITYEDGVA----ILY 61

Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           + +  + D G + C   N  G   +   L V
Sbjct: 62  VKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 62.2 bits (150), Expect = 5e-11
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 14/113 (12%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
                  +  V+     + T+ C       A ++W + G     N    +YQ +    Q 
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTW-YTGPTFFENYETGTYQPLANKNQF 194

Query: 314 EYERKS-------------SLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                S             +LV+  A+ +D+GR +C      G  DA+ +  +
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 17/110 (15%), Positives = 29/110 (26%), Gaps = 23/110 (20%)

Query: 257 IRMDSRYVEAVSSENATVVCRVD---SIPPAAISWYWNGRLLLNNTAFSSY--------- 304
           +R     VE  +     + C         P  ISW        +   F            
Sbjct: 5   VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64

Query: 305 ---QRIFVIEQGEYE--------RKSSLVLTNAQESDSGRFYCVAENRAG 343
                 +    G++            +L LT+    D GR++C     + 
Sbjct: 65  FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSI 114

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 57.7 bits (140), Expect = 8e-11
 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 18/95 (18%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           K +I ++    + +      + C     P     W+ N   L + T              
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-------------- 48

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN 348
               K   ++        G ++C   N     D+ 
Sbjct: 49  ----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK 79

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 62.8 bits (152), Expect = 9e-11
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 9/84 (10%)

Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
                       P   ++W+ N              R++        +  +L L  A + 
Sbjct: 41  PQVPYWLWASVSPRINLTWHKNDSARTVPG--EEETRMWA-------QDGALWLLPALQE 91

Query: 330 DSGRFYCVAENRAGIADANFTLQV 353
           DSG + C   N +     +  L+V
Sbjct: 92  DSGTYVCTTRNASYCDKMSIELRV 115

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 8/108 (7%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRV---DSIPPAAISWY-WNGRLLLNNTA---FSSYQR 306
            P I    + + A      T+ C+V      P   + W+  N   + +       +   R
Sbjct: 226 IPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPR 285

Query: 307 IFVIEQGEYERKSSLVLTNAQESDSGRFY-CVAENRAGIADANFTLQV 353
               E  E   +  L+       D    + CV  N         T++ 
Sbjct: 286 QEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 53.9 bits (129), Expect = 6e-08
 Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 17/107 (15%)

Query: 253 CKPEIRMDSRYVEAVSSENATVVCR-----VDSIPPAAISWYWNGRLLLNNTAFSSYQRI 307
                    + +    S +  +VC              I WY +  LL            
Sbjct: 121 AFLPFISYPQILT--LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLL------DKDNEK 172

Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           F+  +G     + L++ +    D+G + CV          N T  + 
Sbjct: 173 FLSVRGT----THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 215

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 60.8 bits (147), Expect = 9e-11
 Identities = 14/95 (14%), Positives = 32/95 (33%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
                  + ++ C  D      +         + N      +R  ++E+     K+   +
Sbjct: 12  YTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHI 71

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTYRGV 358
            + Q  DSG++ C+    A       T++V    +
Sbjct: 72  PSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYM 106

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 264 VEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
           +        T+ C++     P  + W  +G++L    +  +   +   EQ ++   S L 
Sbjct: 12  ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLR 71

Query: 323 LTNAQESDSGRFYCVAENRAGIAD-ANFTLQV 353
           +T+ Q SD+G++ C+              + +
Sbjct: 72  ITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGL 103

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 14/102 (13%), Positives = 25/102 (24%), Gaps = 18/102 (17%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
            P    +       ++    + C+    P P  + W  +   L                 
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAP------------- 152

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQV 353
                     L     + +  F C A N  G+      T+ V
Sbjct: 153 ---GHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITV 191

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 14/96 (14%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           V+A +  +AT+ C V       ++WY +G+ L      SS  ++ V   G       LV+
Sbjct: 21  VQAEAGASATLSCEVAQ-AQTEVTWYKDGKKL------SSSSKVRVEAVG---CTRRLVV 70

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVG 359
             A ++++G + C A         +F LQV  +  G
Sbjct: 71  QQAGQAEAGEYSCEAGG----QQLSFRLQVAGQCFG 102

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 62.6 bits (151), Expect = 1e-10
 Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 6/100 (6%)

Query: 260 DSRYVEAVSSENATVVCRV----DSIPPAAISWYWNGRLLLNNTAFSSYQ-RIFVIEQGE 314
           D    E    E   + C V           + W  +G+   + T   +    I      +
Sbjct: 232 DHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTED 291

Query: 315 YERKSSLVLTNAQESDSGRFY-CVAENRAGIADANFTLQV 353
             R   L +      D  R Y C A +  G       ++ 
Sbjct: 292 ETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 55.3 bits (132), Expect = 2e-08
 Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 4/88 (4%)

Query: 266 AVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTN 325
            +                  + WYW  +        +       I +     K  L    
Sbjct: 30  PLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISK----EKDVLWFRP 85

Query: 326 AQESDSGRFYCVAENRAGIADANFTLQV 353
              +D+G + C+  N    +   F L+V
Sbjct: 86  TLLNDTGNYTCMLRNTTYCSKVAFPLEV 113

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 22/113 (19%)

Query: 253 CKPEIRMDSRYVEAVSSENATVVCR-----VDSIPPAAISWYWNGRLLLNNTAFSSYQRI 307
           C         +   +      + C        S     I+WY     + N          
Sbjct: 119 CFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF-------NN 171

Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVA----ENRAGIADANFTLQVTYR 356
            + E        +L    A  S++G + CV       R        T++V   
Sbjct: 172 VIPEGM------NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGS 218

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 50/224 (22%), Positives = 70/224 (31%), Gaps = 86/224 (38%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGLL 75
           CPS C C        ++C  K L ++P   P +  TQVL +  N +  L           
Sbjct: 3   CPSQCSC----SGTTVDCSGKSLASVPTGIPTT--TQVLYLYDNQITKLE---------- 46

Query: 76  NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPI 135
                            G  D LT L  +DL +N LT +P+  F  +  L  L+L  N +
Sbjct: 47  ----------------PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90

Query: 136 SKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL 195
             I +GAF               L           KSL  I                   
Sbjct: 91  KSIPRGAF-------------DNL-----------KSLTHI------------------- 107

Query: 196 KLMMIELHDNPWVCDCNMRSI---KMWLADKKNVPVQPACTGPE 236
                 L +NPW C C    I     W++    +        P+
Sbjct: 108 -----WLLNNPWDCAC--SDILYLSRWISQHPGLVFGYLNLDPD 144

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 5/96 (5%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
              + + S   +       TV C V++ P   + W     +    T  ++   +   + G
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPT--AANGGVMKEKDG 161

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANF 349
                   V  +  +       CV +N    A   +
Sbjct: 162 SLS---VAVDLSLPKPWHLPVTCVGKNDKEEAHGVY 194

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 11/101 (10%)

Query: 264 VEAVSSENATVVC---RVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE---QGEYE- 316
           V A   E  T+     RV   P   +SW+  G           +  +  IE   +G ++ 
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 317 ----RKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                   LV+T A  S  G + C  +           L V
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV 101

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
           D   +   +SE   + C +        +WY +G+ +  +      + + V   G   RK 
Sbjct: 16  DKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEES------ELLVVKMDG---RKH 65

Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            L+L  A+  DSG F C  E  +    A F + V 
Sbjct: 66  RLILPEAKVQDSGEFECRTEGVS----AFFGVTVQ 96

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 60.1 bits (145), Expect = 2e-10
 Identities = 16/102 (15%), Positives = 24/102 (23%), Gaps = 12/102 (11%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           KP               +  + C       P    W          T       +  +  
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT-----PWLAEMTS 175

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                   + + NA    SG + C  +NR G       L V 
Sbjct: 176 P------VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV 211

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 55.1 bits (132), Expect = 8e-09
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 19/121 (15%)

Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIP----PAAISW---------------YWNGRLLL 296
            I    + +E    E A + C+    P    P  I W                ++G  + 
Sbjct: 2   SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61

Query: 297 NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
           +N       R+           +S+ +TN Q SD G + C  +   G+A+  F L V  +
Sbjct: 62  DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121

Query: 357 G 357
            
Sbjct: 122 P 122

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 61.9 bits (150), Expect = 2e-10
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 19/100 (19%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
               ++D           A   C+    P   +SW  +G+ + ++               
Sbjct: 307 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS--------------- 351

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
               +S L + + ++ D G + C   N    A+A+  L++
Sbjct: 352 ----ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 60.7 bits (147), Expect = 5e-10
 Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 233 TGPERLSGKVFSDLHADDFACKPEIR--MDSRYVEAVSSENATVVCRVDSIPPAAISWYW 290
           TG  RLS      +  +  +        +  + +E + +   +++C     P  +  WY 
Sbjct: 189 TGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYK 248

Query: 291 NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFT 350
                    A     R+  +         +L++ +A   DSG++ CV  N  G       
Sbjct: 249 FIEGTTRKQAVVLNDRVKQVS-------GTLIIKDAVVEDSGKYLCVVNNSVGGESVETV 301

Query: 351 LQVT 354
           L VT
Sbjct: 302 LTVT 305

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSS 320
           +  ++  +S  A + C+    P   I W  +    + +          +   G       
Sbjct: 11  TNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD----VPGLRQISSDG------K 60

Query: 321 LVLTNA------QESDSGRFYCVAENRAGIA 345
           LV          QE  +  + C+A N+ G  
Sbjct: 61  LVFPPFRAEDYRQEVHAQVYACLARNQFGSI 91

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 11/97 (11%)

Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSI---PPAAISWYWNGRLLLNNTAFSSYQRI 307
                    D      +   +A + C + S        +SW+ +        A     + 
Sbjct: 100 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYD-GKY 158

Query: 308 FVIEQGEYERKSSLVLTNAQESDS-GRFYCVAENRAG 343
            V+  G       L +      D    + C  ++R  
Sbjct: 159 LVLPSG------ELHIREVGPEDGYKSYQCRTKHRLT 189

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 15/85 (17%)

Query: 270 ENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE 328
            + T +C   S  P   + W       L + A        +   G       L + N Q 
Sbjct: 26  ADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--------MDFNG------ILTIRNVQP 71

Query: 329 SDSGRFYCVAENRAGIADANFTLQV 353
           SD+G + C   N   +     TL V
Sbjct: 72  SDAGTYVCTGSNMFAMDQGTATLHV 96

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 60.9 bits (147), Expect = 3e-10
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 9/105 (8%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           KP+   + + V+          C      PPA I+W+ +   + N +    +        
Sbjct: 117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLS------ 170

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD--ANFTLQVTY 355
           G     S  +L  + + D     C  E+ +          L V Y
Sbjct: 171 GTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY 215

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 17/104 (16%), Positives = 28/104 (26%), Gaps = 17/104 (16%)

Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFV 309
           +  +  I         +    AT+ C   S P P   +W      L              
Sbjct: 215 YPPEVSISGYDNNW-YLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQG------ 267

Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                    + L++    +  +    C   N  G   A  T+QV
Sbjct: 268 ---------AQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 15/105 (14%)

Query: 264 VEAVSSENATVVCRVDSIPP-----AAISWYWNGR-------LLLNNTAFSSYQRIFVI- 310
           V     ++ T+ C +          + ++W  +G              ++S  +R+  + 
Sbjct: 10  VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA 69

Query: 311 -EQGEYERKSSLVLTNAQESDSGRFYCVAEN-RAGIADANFTLQV 353
              G   R +SL +   +  D G + C+      G    +  L+V
Sbjct: 70  ARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P I      +     E AT+ C+ +  P   I WY  G  +  +       R+ +    
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG-IADANFTLQVTY 355
            +     +V       D G + CVA N  G     + +L+V  
Sbjct: 69  LF--FLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 18/101 (17%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           + ++ ++            T+ C V + P   I W  +G  L                  
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-------------- 55

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                  L+L      D G + CVA + +     +  + ++
Sbjct: 56  ----SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 60.0 bits (145), Expect = 5e-10
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 12/90 (13%)

Query: 265 EAVSSENATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           E     N  + C+V +I     I WY + R +  +            + G      +L++
Sbjct: 232 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD-------FKDGIC----TLLI 280

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
           T   + D+G +  + ++  G   +   L  
Sbjct: 281 TEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 10/103 (9%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P  +     V+     +    C     P +  SW  +     ++       R+ V  +G
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDS------PRLEVESKG 55

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
               K+ +   +    D G + C   +  GIA +    +   +
Sbjct: 56  ---NKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELK 95

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 8/113 (7%), Positives = 30/113 (26%), Gaps = 7/113 (6%)

Query: 241 KVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTA 300
           K    L  +       ++ +         +    +        A +++ +N + +     
Sbjct: 95  KRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE--- 151

Query: 301 FSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                ++ +           + +   Q+ D G +    ++      +   L  
Sbjct: 152 -GPKYKMHIDRNT---GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVG 200

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 55.8 bits (135), Expect = 5e-10
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 10/90 (11%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
            +    +   +   V S   A + W  NG  L    +F +  R    + G   ++  L+ 
Sbjct: 18  QQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKA--RYRFKKDG---KRHILIF 71

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
           ++  + D GR+  +       A     L V
Sbjct: 72  SDVVQEDRGRYQVITNGGQCEA----ELIV 97

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 59.3 bits (143), Expect = 6e-10
 Identities = 12/102 (11%), Positives = 22/102 (21%), Gaps = 22/102 (21%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           + + R          +   T +C+    P   +    +G   L                 
Sbjct: 185 RLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL----------------- 227

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
                             G + C A +  G      T+ V  
Sbjct: 228 -----PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 16/105 (15%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAA---ISWYWNGRLLLNNTAFSSYQRIFVIE 311
           P++    R +E       TVVC +D + P +   +      + L             V  
Sbjct: 7   PQLVS-PRVLEV--DTQGTVVCSLDGLFPVSEAQVHLALGDQRL----------NPTVTY 53

Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
             +     + V   A++  + R  C         +   T+ +   
Sbjct: 54  GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF 98

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           + E+  D   +   ++E A   C V S       WY NG  +  +      +RI +   G
Sbjct: 8   QLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPS------KRITISHVG 60

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQ 352
              R   LV+ + +  D G +  V +  A    A     
Sbjct: 61  ---RFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFL 96

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 14/103 (13%)

Query: 252 ACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
               E+      VE    E A     + S P     W   G+ L  +          +IE
Sbjct: 3   MALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAAS------PDCEIIE 55

Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            G   +K  L+L N Q   +G     A N    A     L+V 
Sbjct: 56  DG---KKHILILHNCQLGMTGEVSFQAANTKSAA----NLKVK 91

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 14/95 (14%)

Query: 260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
              YV AV  E   + C +   P A + W  +G  ++ +        + + ++       
Sbjct: 19  GKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVES------PALLLQKEDT---VR 68

Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            LVL   Q  DSG + C  ++ +    A+FT+ VT
Sbjct: 69  RLVLPAVQLEDSGEYLCEIDDES----ASFTVTVT 99

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 18/88 (20%)

Query: 270 ENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE 328
           E   + C          + +Y NG+                     +   S+L +     
Sbjct: 98  EPLALRCHAWKDKLVYNVLYYRNGKAF-----------------KFFHWNSNLTILKTNI 140

Query: 329 SDSGRFYCVAENRAGIADANFTLQVTYR 356
           S +G ++C    +     A  ++ V   
Sbjct: 141 SHNGTYHCSGMGKHRYTSAGISVTVKEL 168

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 20/91 (21%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           K  I +   +V     E  T+ C V  +P  ++  W+ NG     +T             
Sbjct: 1   KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST------------- 47

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAG 343
                  S  +T+A  +DSG + C       
Sbjct: 48  ------PSYRITSASVNDSGEYRCQRGLSGR 72

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 17/104 (16%), Positives = 27/104 (25%), Gaps = 16/104 (15%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P +         +     T+ C    +        +          FS Y     +   
Sbjct: 171 APVLNASVT-SPLLEGNLVTLSCETKLLLQRPGLQLY----------FSFYMGSKTL--R 217

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIAD---ANFTLQVT 354
                S   +  A+  DSG ++C A    G          LQV 
Sbjct: 218 GRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 57.6 bits (138), Expect = 2e-09
 Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 14/114 (12%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDS---IPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
           P + + S  +     E+  + C V          + W ++      +     Y     + 
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 312 QGEYE-----------RKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            G ++              SL+L + Q++D G + C    +         +++ 
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 53.3 bits (127), Expect = 5e-08
 Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 18/114 (15%)

Query: 259 MDSRYVEAVSSENATVVCRVDSIPP---AAISWYWNGRLLLNNTAFSSYQ---------- 305
            + R +     +   + C + S        ++W ++           SY           
Sbjct: 123 EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQS 182

Query: 306 ----RIFVIEQGEYERKS-SLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
               R  V   G+  R   S+ L   +ESD G + C        +     L V 
Sbjct: 183 LGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV 236

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 14/101 (13%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
                   R VE  +   A      +      + W   G  +  +       +  +  +G
Sbjct: 8   VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISAS------NKYGLATEG 60

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
               + +L +     +D G +  +    AG +   F L+V 
Sbjct: 61  ---TRHTLTVREVGPADQGSYAVI----AGSSKVKFDLKVI 94

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 57.8 bits (139), Expect = 3e-09
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 8/95 (8%)

Query: 262 RYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSS 320
           R  +    +     C   +  PP+ +SW    +         +         G     S 
Sbjct: 143 RAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRN-------PNGTVTVISR 195

Query: 321 LVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
             L  ++E+      C+          + TL V Y
Sbjct: 196 YRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY 230

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 57.8 bits (139), Expect = 3e-09
 Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 15/91 (16%)

Query: 266 AVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
            +   +  + C+ D+ PPA    W      L       +              ++     
Sbjct: 244 YLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQN--------------RTLFFKG 289

Query: 325 NAQESDSGRFYCVAENRAGIADANFTLQVTY 355
               S +G + C A N  G       + +T 
Sbjct: 290 PINYSLAGTYICEATNPIGTRSGQVEVNITE 320

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 14/104 (13%)

Query: 264 VEAVSSENATVVCRV----DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYER-- 317
           +      +  + C       S+    ++W  +      N A  +      +     ER  
Sbjct: 24  MYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVE 83

Query: 318 -------KSSLVLTNAQESDSGRFYCVAEN-RAGIADANFTLQV 353
                    ++ L+  +  D G + C       G  ++   L V
Sbjct: 84  FLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTV 127

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.5 bits (140), Expect = 3e-09
 Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 17/161 (10%)

Query: 52  QVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDGLTNLIEIDLSDN 109
             L ++  N+   +P      + +  L  L  +   + G +   ++  L NL+ I    N
Sbjct: 104 HYLYITHTNVSGAIPDFL---SQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGN 159

Query: 110 LLT-SIPSLTFQSVRFLRDLNLARNPIS-KI--EKGAFQFVPGLVKLDMSESRLE-HISP 164
            ++ +IP       +    + ++RN ++ KI            L  +D+S + LE     
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----LAFVDLSRNMLEGDA-S 214

Query: 165 EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
             F   K+ + I L  N L+ F +  V     L  ++L +N
Sbjct: 215 VLFGSDKNTQKIHLAKNSLA-FDLGKVGLSKNLNGLDLRNN 254

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.3 bits (129), Expect = 7e-08
 Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 39/167 (23%)

Query: 48  SELTQVLDMSGNNLQ-ILPKEAFRRAGLLNLQKLFLARCHI-GQIDSGALDGLTNLIEID 105
           S+L   + +S N L   +P         LNL  + L+R  + G   S       N  +I 
Sbjct: 173 SKLFTSMTISRNRLTGKIPPT----FANLNLAFVDLSRNMLEGDA-SVLFGSDKNTQKIH 227

Query: 106 LSDNLLT-SIPSLTFQSVRFLRDLNLARNPIS-KIEKGAFQFVPGLVKLDMSESRLEHIS 163
           L+ N L   +  +     + L  L+L  N I   +                         
Sbjct: 228 LAKNSLAFDLGKVGL--SKNLNGLDLRNNRIYGTL------------------------- 260

Query: 164 PEAFTGAKSLESIKLNGNRLS-HFPVRSVEPLLKLMMIELHDNPWVC 209
           P+  T  K L S+ ++ N L    P      L +  +    +N  +C
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQGGN--LQRFDVSAYANNKCLC 305

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 20/144 (13%)

Query: 52  QVLDMSGNNLQ---ILPKEAFRRAGLLNLQKLFLA-RCHI-GQIDSGALDGLTNLIEIDL 106
             LD+SG NL     +P        L  L  L++    ++ G I   A+  LT L  + +
Sbjct: 53  NNLDLSGLNLPKPYPIPSSLAN---LPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYI 108

Query: 107 SDNLLT-SIPSLTFQSVRFLRDLNLARNPISKIEKG----AFQFVPGLVKLDMSESRLE- 160
           +   ++ +IP      ++ L  L+ + N +S    G    +   +P LV +    +R+  
Sbjct: 109 THTNVSGAIPD-FLSQIKTLVTLDFSYNALS----GTLPPSISSLPNLVGITFDGNRISG 163

Query: 161 HISPEAFTGAKSLESIKLNGNRLS 184
            I     + +K   S+ ++ NRL+
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLT 187

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 12/90 (13%)

Query: 265 EAVSSENATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           E     N  + C+V +I     I WY + R +  +            + G      +L++
Sbjct: 127 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVD-------EKHDFKDGI----CTLLI 175

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
           T   + D+G +  + ++  G   +   L  
Sbjct: 176 TEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 51.9 bits (124), Expect = 9e-08
 Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 8/91 (8%)

Query: 264 VEAVSSENATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
           VE +         + + +   A +++ +N + +        Y+       G       + 
Sbjct: 12  VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG---PKYKMHIDRNTGII----EMF 64

Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           +   Q+ D G +    ++      +   L  
Sbjct: 65  MEKLQDEDEGTYTFQLQDGKATNHSTVVLVG 95

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 58.0 bits (139), Expect = 4e-09
 Identities = 12/102 (11%), Positives = 22/102 (21%), Gaps = 22/102 (21%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           + + R          +   T +C+    P   +    +G   L                 
Sbjct: 370 RLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL----------------- 412

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
                             G + C A +  G      T+ V  
Sbjct: 413 -----PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 12/104 (11%), Positives = 27/104 (25%), Gaps = 17/104 (16%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA---ISWYWNGRLLLNNTAFSSYQRIFVI 310
           + E+     +      +N T+ C+V+   P A   +      + L    A          
Sbjct: 88  RVELAPLPSWQPV--GKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGE------- 138

Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                  + +  +   ++     F C  E              +
Sbjct: 139 -----PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTS 177

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 57.5 bits (138), Expect = 4e-09
 Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 9/105 (8%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIP----PAAISWYWNGRLLLNNTAFSSYQRIFV 309
                +    +     E A + C   S         I W      ++       +    +
Sbjct: 228 HRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIG----LDFGVYSI 283

Query: 310 IEQGEYERKSSLVLTNAQESDSGRFY-CVAENRAGIADANFTLQV 353
           +       +++L   N  E   G  Y C   N         T+ +
Sbjct: 284 LTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 53.7 bits (128), Expect = 7e-08
 Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 13/102 (12%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
            P    ++  +         + C +        I+WY N + L+ +    S         
Sbjct: 128 PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYS--------- 178

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
              +   +L++ N +  DSGR+ C           +  +   
Sbjct: 179 ---QSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRC 217

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 12/93 (12%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
             A   E   + C V S   A + W+ NG  ++         R  +  +G   +K  L++
Sbjct: 17  TTAYCGERVELECEV-SEDDANVKWFKNGEEIIP----GPKSRYRIRVEG---KKHILII 68

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
             A ++D+  +  +       A     L V  +
Sbjct: 69  EGATKADAAEYSVMTTGGQSSA----KLSVDLK 97

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           +  I  D   V+     +AT  CR+       + W+ +   L      +    I     G
Sbjct: 13  RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHA----NELNEIDAQPGG 68

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            +     L L      DSG  Y      AG   A+  L+VT
Sbjct: 69  YH----VLTLRQLALKDSGTIYFE----AGDQRASAALRVT 101

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 10/95 (10%)

Query: 252 ACKPEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI 310
           +    I    + +E +  E+ +  C +          W   G+ + ++       R    
Sbjct: 6   SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSS------SRFQAT 59

Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA 345
            QG   RK  LV+  A  SD+G            A
Sbjct: 60  RQG---RKYILVVREAAPSDAGEVVFSVRGLTSKA 91

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 13/85 (15%)

Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
               +   +     A + W  NG+ +       S  +      G    K +L ++    +
Sbjct: 32  HKIRLTVELAD-HDAEVKWLKNGQEIQM-----SGSKYIFESIG---AKRTLTISQCSLA 82

Query: 330 DSGRFYCVAENRAGIADANFTLQVT 354
           D   + CV             L V 
Sbjct: 83  DDAAYQCVVGGEKCST----ELFVK 103

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 22/104 (21%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           K  ++++  ++  +  ++ T+ C+    P +  I W+ NG L+  +T             
Sbjct: 4   KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT------------- 50

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
                        A  +DSG + C              L V + 
Sbjct: 51  ------QPSYRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFE 86

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 19/91 (20%)

Query: 265 EAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           E    E   + C      P   ++++ NG+                          +  +
Sbjct: 96  EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQ-----------------KFSHLDPTFSI 138

Query: 324 TNAQESDSGRFYCVAENRAGIADAN-FTLQV 353
             A  S SG ++C       +  +   T+ V
Sbjct: 139 PQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 20/88 (22%)

Query: 267 VSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA 326
            +  N T+ C V +     ++ Y +G+ L  +                      ++    
Sbjct: 113 WTCINTTLTCEVMNGTDPELNLYQDGKHLKLS--------------------QRVITHKW 152

Query: 327 QESDSGRFYCVAENRAGIADANFTLQVT 354
             S S +F C A N+     +   +   
Sbjct: 153 TTSLSAKFKCTAGNKVSKESSVEPVSCP 180

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 11/107 (10%), Positives = 28/107 (26%), Gaps = 16/107 (14%)

Query: 260 DSRYVEAVSSENAT--VVCRVDSIPPAAISWYWNGRLLL------NNTAFSSYQRIFVIE 311
           ++        ++    +     S     I W                  F       + +
Sbjct: 5   NALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFK 64

Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAG--IADANFTLQVTYR 356
            G      +L + + +  D   +     +  G  + +  F L++  R
Sbjct: 65  NG------TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER 105

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 10/100 (10%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
             I            E+  + C +       + W  + + +  +      Q+  V+ +G 
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKS------QKYDVVCEG- 60

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
               + LV+  A   D+G + C  E     A  +   + +
Sbjct: 61  --TMAMLVIRGASLKDAGEYTCEVEASKSTASLHVEEKAS 98

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 7/90 (7%), Positives = 21/90 (23%), Gaps = 19/90 (21%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
              +  ++ T+          ++         +                       +L +
Sbjct: 107 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG-------------------GKTLSV 147

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
           +  +  DSG + C         +    + V
Sbjct: 148 SQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 10/88 (11%), Positives = 25/88 (28%), Gaps = 8/88 (9%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS---- 319
           V     +   + C           W  + ++ +     S   +         + +     
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 320 ----SLVLTNAQESDSGRFYCVAENRAG 343
                L++ N +  DS  + C  E++  
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQKE 92

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 7/93 (7%), Positives = 21/93 (22%), Gaps = 19/93 (20%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
              +  ++ T+          ++         +                       +L +
Sbjct: 106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG-------------------GKTLSV 146

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
           +  +  DSG + C         +    + V   
Sbjct: 147 SQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF 179

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 50.6 bits (120), Expect = 9e-07
 Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 8/88 (9%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQ--------RIFVIEQGEY 315
           V     +   + C           W  + ++ +     S           R         
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAG 343
           +    L++ N +  DS  + C  E++  
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKE 91

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 15/100 (15%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
                D +  EA     AT+ C +     A + W      L +        R  + + G 
Sbjct: 9   ARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDG------GRYSLKQDG- 59

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
              +  L + +   +D+G + C+          + TL V 
Sbjct: 60  --TRCELQIHDLSVADAGEYSCMCGQ----ERTSATLTVR 93

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 11/99 (11%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
            +I            +   + C +    P    W  NG  +  +       R+ V+++G 
Sbjct: 8   LKILTPLTDQTVNLGKEICLKCEISENIP--GKWTKNGLPVQES------DRLKVVQKG- 58

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
             R   LV+ NA   D G +    +       A   +  
Sbjct: 59  --RIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVIS 95

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 14/91 (15%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
            +         V  + + P   + WY NG+ +  +       +     +G    +  L +
Sbjct: 18  YQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPS------TKYIFEHKG---CQRILFI 67

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            N Q +D   +Y  A +       +  L V 
Sbjct: 68  NNCQMTDDSEYYVTAGD----EKCSTELFVR 94

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 53.1 bits (127), Expect = 4e-08
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 13/102 (12%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
            +  +          ++ T+ C  +    A I W +N + L          R+ + +   
Sbjct: 111 TQPFLQVTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTE------RMTLSQNN- 162

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQVTY 355
               S L +   +  D+G + C   N   +  +N   L + +
Sbjct: 163 ----SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF 200

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 9/86 (10%), Positives = 21/86 (24%), Gaps = 7/86 (8%)

Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYER------- 317
           +     N  ++     +   A +WY      ++           +   G+          
Sbjct: 10  QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69

Query: 318 KSSLVLTNAQESDSGRFYCVAENRAG 343
             SL+       D G +     +   
Sbjct: 70  NGSLLFQMITMKDMGVYTLDMTDENY 95

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 55.0 bits (131), Expect = 4e-08
 Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 8/110 (7%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQ--------R 306
           P +  D++          T+ C   +         +    L       S          R
Sbjct: 113 PGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGR 172

Query: 307 IFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
           I +  QG  +   S+V+   + SD+G++ C A + +     N  LQV   
Sbjct: 173 IRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP 222

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 51.9 bits (123), Expect = 4e-07
 Identities = 19/103 (18%), Positives = 28/103 (27%), Gaps = 7/103 (6%)

Query: 264 VEAVSSENATVVCRVDS----IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
           V AV  E   V C               W   G   L +      +     ++    R  
Sbjct: 452 VTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENS--RLV 509

Query: 320 SLVLTNAQESDSGRFYCVAENRAGI-ADANFTLQVTYRGVGLP 361
           SL L     +D G ++C  +        A   + V  R     
Sbjct: 510 SLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGS 552

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           +    +  A  +CR  S     +     G+         +++   ++   + +   S+V+
Sbjct: 241 LGPEVANVAKFLCRQSSGENCDVVVNTLGKRAP------AFEGRILLNPQDKDGSFSVVI 294

Query: 324 TNAQESDSGRFYCVAENRAG 343
           T  ++ D+GR+ C A +   
Sbjct: 295 TGLRKEDAGRYLCGAHSDGQ 314

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWY--WNGRLLL--------NNTAFSSYQRIFVIEQG 313
           V+ V+  +  V+C  +     +I ++  W G                 + Y+    + + 
Sbjct: 341 VKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE 400

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGI 344
                 +++L      D+G ++C+       
Sbjct: 401 PGNGTFTVILNQLTSRDAGFYWCLTNGDTLW 431

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 41.5 bits (96), Expect = 7e-04
 Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 10/97 (10%)

Query: 264 VEAVSSENATVVCRVDS---IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEY----- 315
           V +V   + ++ C              W   G      T  SS   +     G       
Sbjct: 10  VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNF 69

Query: 316 --ERKSSLVLTNAQESDSGRFYCVAENRAGIADANFT 350
                  + +    + DSGR+ C     +     + +
Sbjct: 70  PENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVS 106

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 9/119 (7%)

Query: 236 ERLSGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLL 295
            R       D   D    +P   +     E    ++A   CRV +  P  ++W+ + R L
Sbjct: 464 HRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDREL 523

Query: 296 LNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
             +  +            +Y     L +   +  D G +   A+N  G  +    L VT
Sbjct: 524 KQSVKYMKRY-----NGNDY----GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 50.8 bits (121), Expect = 6e-08
 Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGR--LLLNNTAFSSYQRIFVIEQ 312
             +   +  +     +  T+ C       +++ W       + LN        +  ++  
Sbjct: 2   GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
              +   S+ + N    D G + C+      ++     + V
Sbjct: 62  SANQ--LSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIV 99

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 48  SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS 107
           + + + L +          E    A  +NL+ L L    +  + +  L  L  L +++LS
Sbjct: 24  AAVRE-LVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELS 79

Query: 108 DNLLTSIPSLTFQSVRFLRDLNLARNPISKIE 139
           +N +     +  + +  L  LNL+ N +  I 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 105 DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISP 164
           D+   +   + + T  +VR L  L+  ++   KIE    +F   L  L +    L  +  
Sbjct: 9   DMKRRIHLELRNRTPAAVREL-VLDNCKSNDGKIEGLTAEF-VNLEFLSLINVGLISV-- 64

Query: 165 EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
                   L+ ++L+ NR+        E L  L  + L  N
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 14/99 (14%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
                +   ++      A   C+    P A ++W      L  +       +    ++G 
Sbjct: 9   NCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRAS------GKHQPSQEG- 60

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                 L ++  +++DS  + C      G A +   L V
Sbjct: 61  --LTLRLTISALEKADSDTYTCD----IGQAQSRAQLLV 93

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 9/106 (8%)

Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPA---AISWYWNGRLLLNNTAFSSYQRI 307
           F  KP+       V   + ++A VV +V+         I W+    L L + + + +   
Sbjct: 15  FLKKPDS------VSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFK 68

Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                        L +      D G +    + +       F + V
Sbjct: 69  ESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 13/106 (12%)

Query: 258 RMDSRYVEAVSSENATVV--------CRVDSIPPAAISWYWNGRLLL--NNTAFSSYQRI 307
           ++     +   ++N TVV        CRVD     ++ W    +  L  ++       RI
Sbjct: 2   KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61

Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
            ++    +E   S+ +++   SD G++ C       +  +   L V
Sbjct: 62  ELVRASWHE--LSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 29/168 (17%)

Query: 52  QVLDMSGNNLQILPKEAFRRA--GLLNLQKLFLARCHIGQID----SGALDGLTNLIEID 105
           Q LD+    L       +      L   Q + L  C + +      S AL     L E++
Sbjct: 6   QSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 106 LSDNLLTSI------PSLTFQSVRFLRDLNLARNPISKIEKGA------FQFVPGLVKLD 153
           L  N L  +        L   S + ++ L+L    ++    G        + +P L +L 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCK-IQKLSLQNCCLT--GAGCGVLSSTLRTLPTLQELH 119

Query: 154 MSESRLEHISPEAFTGA-----KSLESIKLNGNRLSHFPVRSVEPLLK 196
           +S++ L     +            LE ++L    LS      +  +L+
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 29/158 (18%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLL-----NLQKLFLARCHIGQID----SGALDGLTNLI 102
           Q L +S N L             L      L+KL L  C +        +  L    +  
Sbjct: 116 QELHLSDNLLG--DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173

Query: 103 EIDLSDNLL-----TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV------PGLVK 151
           E+ +S+N +       +      S   L  L L    ++                  L +
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT--SDNCRDLCGIVASKASLRE 231

Query: 152 LDMSESRL-----EHISPEAFTGAKSLESIKLNGNRLS 184
           L +  ++L       + P     +  L ++ +    ++
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 30/159 (18%), Positives = 48/159 (30%), Gaps = 29/159 (18%)

Query: 52  QVLDMSGNNL-----QILPKEAFRRAGLLNLQKLFLARCHIGQID----SGALDGLTNLI 102
             L++  N L       +  +  +      +QKL L  C +        S  L  L  L 
Sbjct: 59  AELNLRSNELGDVGVHCV-LQGLQTPSC-KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 116

Query: 103 EIDLSDNLLT-----SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV------PGLVK 151
           E+ LSDNLL       +          L  L L    +S                P   +
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS--AASCEPLASVLRAKPDFKE 174

Query: 152 LDMSESRLEHISPEAFTGA-----KSLESIKLNGNRLSH 185
           L +S + +                  LE++KL    ++ 
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 31/155 (20%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLL-----NLQKLFLARCHIGQID----SGALDGLTNLI 102
           + L ++GN L    + A      L      L+ L++  C          S  L     L+
Sbjct: 287 KELSLAGNELG--DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344

Query: 103 EIDLSDNLLT-----SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV------PGLVK 151
           E+ +S+N L       +     Q    LR L LA   +S  +               L +
Sbjct: 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS--DSSCSSLAATLLANHSLRE 402

Query: 152 LDMSESRLEHISPEAFTGAKSL-ESIKLNGNRLSH 185
           LD+S +    +      G   L ES++  G  L  
Sbjct: 403 LDLSNN---CLGDA---GILQLVESVRQPGCLLEQ 431

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 20/119 (16%)

Query: 239 SGKVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLN 297
           +    SD    +      +    R+V     +   + C          +++  NG+    
Sbjct: 74  NLSTLSDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKDR-- 130

Query: 298 NTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQVTY 355
              +  +   F I               A   DSG ++C     +    +    + +T 
Sbjct: 131 --KYFHHNSDFHI-------------PKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 22/103 (21%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           K  + ++ ++   +  ++ T+ C+    P   +  W+ N  L+ +               
Sbjct: 7   KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA------------- 53

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
                 SS  +  A  +DSG + C              L+V  
Sbjct: 54  ------SSYFIDAATVNDSGEYRCQTNL--STLSDPVQLEVHI 88

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 15/100 (15%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
            +     R  EA     A + C +  + P  + W+     L +        R  + + G 
Sbjct: 20  IKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDG------DRHSLRQDG- 70

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
              +  L +      D+G + C+     G    +  L V 
Sbjct: 71  --ARCELQIRGLVAEDAGEYLCM----CGKERTSAMLTVR 104

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 50.3 bits (119), Expect = 4e-07
 Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 13/111 (11%)

Query: 241 KVFSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTA 300
           K  +     D   +      + Y  ++S     + C     P + I W  N + +  +  
Sbjct: 100 KDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDKNIGGDED 157

Query: 301 FSSYQRIFVIEQGEYERKSSLVLTN-AQESDSGRFYCVAENRAGIADANFT 350
             +              +  L L   ++   SG + C            + 
Sbjct: 158 DKNIG----------SDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYL 198

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 60/342 (17%), Positives = 97/342 (28%), Gaps = 114/342 (33%)

Query: 26  KG-GKQWM---ECRDK----------FLITIPEAPESELTQVLDMSGNNLQILPKEAFRR 71
            G GK W+    C             F + +      E   VL+M               
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET--VLEM--------------- 201

Query: 72  AGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRF------L 125
                LQKL     +  QID        +   I L  + + +      +S  +      L
Sbjct: 202 -----LQKL----LY--QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 126 RDLNLAR-----NPISKI-----EKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLE- 174
            ++  A+     N   KI      K    F+        +   L+H S    T  +    
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT---TTHISLDHHS-MTLTPDEVKSL 306

Query: 175 SIKLNGNRLSHFP--VRSVEPLLKLMMI--ELHDNP--WVCDCNMRSIKMWLADKKNVPV 228
            +K    R    P  V +  P   L +I   + D    W           W         
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATW---------DNWK-------- 348

Query: 229 QPACTGPERLSGKVFSDLHADDFACKPEIRMDSRYVE-AVSSENATVVCRVDSIPPAAIS 287
              C   ++L+  + S L+  + A   E R    +   +V   +A        IP   +S
Sbjct: 349 HVNC---DKLTTIIESSLNVLEPA---EYR--KMFDRLSVFPPSA-------HIPTILLS 393

Query: 288 WYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
             W                + V+   +  +  SLV    +ES
Sbjct: 394 LIWFD---------VIKSDVMVVVN-KLHKY-SLVEKQPKES 424

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 56/341 (16%), Positives = 102/341 (29%), Gaps = 83/341 (24%)

Query: 44  EAPESE--LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLAR-----CHIGQIDSGALD 96
              E +  L + LD      Q LP+E            +                    D
Sbjct: 299 TPDEVKSLLLKYLDCR---PQDLPREVLTTNPRR--LSIIAESIRDGLATWDNWKHVNCD 353

Query: 97  GLTNLIEIDLSDNLLTSIPSLTFQS-VRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMS 155
            LT +IE  L + L  +     F     F    ++   P   +          L+  D+ 
Sbjct: 354 KLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAHI---PTILLS---------LIWFDVI 400

Query: 156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHF-PVRSVEPLLKLM-MIELHDNPWVCDCNM 213
           +S +  +  +      SL  ++      +   P   +E  +KL     LH +        
Sbjct: 401 KSDVMVVVNKLHK--YSL--VEKQPKESTISIPSIYLELKVKLENEYALHRS-------- 448

Query: 214 RSIKMWLADKKNVP--VQPACTGPERLSGKVFSDL--H------ADDFACKPEIRMDSRY 263
                 + D  N+P         P  L    +S +  H       +       + +D R+
Sbjct: 449 ------IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTA--FSSYQRIFVIEQGEYERKSSL 321
           +E        +  R DS         WN    + NT      Y+        +YER  + 
Sbjct: 503 LE------QKI--RHDSTA-------WNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547

Query: 322 VLTNAQESDS----GRFYCV------AENRAGIADANFTLQ 352
           +L    + +      ++  +      AE+ A   +A+  +Q
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 19/88 (21%)

Query: 270 ENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE 328
           +   + C          + +Y +G  L                   +    ++ +TNA  
Sbjct: 101 QPLFLRCHGWRNWDVYKVIYYKDGEAL-----------------KYWYENHNISITNATV 143

Query: 329 SDSGRFYCVAENRAGIADAN-FTLQVTY 355
            DSG +YC  +      ++    + V  
Sbjct: 144 EDSGTYYCTGKVWQLDYESEPLNITVIK 171

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 20/88 (22%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           KP++ ++  +      EN T+ C  ++    +   W+ NG L                  
Sbjct: 4   KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN------------- 50

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAEN 340
                 SSL + NA+  DSG + C  + 
Sbjct: 51  ------SSLNIVNAKFEDSGEYKCQHQQ 72

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 14/100 (14%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
              +   + +E +    AT+ C + S   A + W +   +L          +  + ++G 
Sbjct: 9   VRFQEALKDLEVLEGGAATLRCVLSS-VAAPVKWCYGNNVLRPG------DKYSLRQEG- 60

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                 LV+ N +  DSGR+ C   ++   A    TL VT
Sbjct: 61  --AMLELVVRNLRPQDSGRYSCSFGDQTTSA----TLTVT 94

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 49.4 bits (117), Expect = 6e-07
 Identities = 9/87 (10%), Positives = 23/87 (26%), Gaps = 12/87 (13%)

Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
           ++ ++ C          SW       LN    +                S+L +      
Sbjct: 17  DSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNE------------GTTSTLTMNPVSFG 64

Query: 330 DSGRFYCVAENRAGIADANFTLQVTYR 356
           +   + C A   +   +    +++   
Sbjct: 65  NEHSYLCTATCESRKLEKGIQVEIYSF 91

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 20/120 (16%), Positives = 32/120 (26%), Gaps = 18/120 (15%)

Query: 246 LHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAA---ISWYWNGRLLLNNTAFS 302
           +    F   PEI +        + +  TV C V  + P     I       L+ +     
Sbjct: 86  VEIYSFPKDPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLE 142

Query: 303 SYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG-------IADANFTLQVTY 355
              R     +    +   +  T   E       C A+           +  A   LQV  
Sbjct: 143 DADR-----KSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYI 197

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 49.8 bits (118), Expect = 7e-07
 Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 12/114 (10%)

Query: 254 KPEIRMDSRYVEAVSSEN-ATVVCRV-DSIPPAAISWYWNGRLLLN----NTAFSSYQRI 307
             E+  +   +  +         C   +  P   I+WY NG+ L      N       R 
Sbjct: 118 ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRT 177

Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD------ANFTLQVTY 355
                G     S+L L   ++     F+C A                F L + Y
Sbjct: 178 VREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLHY 231

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 13/103 (12%)

Query: 264 VEAVSSENATVVCRVDSIPPAA-ISWYWNGR------LLLNNTAFSSYQRIFVIEQGEYE 316
           VE +  ++  + C          + W+   R      L       S  Q      +G   
Sbjct: 10  VEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSP 69

Query: 317 R-----KSSLVLTNAQESDSGRFYC-VAENRAGIADANFTLQV 353
                 +  LVL  AQ  D   + C V    AG A+A   L V
Sbjct: 70  PYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 48.8 bits (116), Expect = 8e-07
 Identities = 12/88 (13%), Positives = 19/88 (21%), Gaps = 20/88 (22%)

Query: 267 VSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA 326
               NAT+ C V       +  Y     L +                         ++  
Sbjct: 108 WECSNATLTCEVLEGTDVELKLYQGKEHLRSL--------------------RQKTMSYQ 147

Query: 327 QESDSGRFYCVAENRAGIADANFTLQVT 354
             +    F C A NR         +   
Sbjct: 148 WTNLRAPFKCKAVNRVSQESEMEVVNCP 175

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 15/102 (14%), Positives = 25/102 (24%), Gaps = 12/102 (11%)

Query: 260 DSRYVEAVSSENATVVCRVDSIPPA--AISWYWNGRLLL----NNTAFSSYQRIFVIEQG 313
           DS  V         +      +      + W     L+         F       ++  G
Sbjct: 2   DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 61

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
                  L + N    DSG +     +  G    N  L +  
Sbjct: 62  ------DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRI 97

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           + LD+ G  + ++  E      L     +  +   I ++D      L  L  + +++N +
Sbjct: 22  RELDLRGYKIPVI--ENLGAT-LDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRI 76

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIE 139
             I     Q++  L +L L  N + ++ 
Sbjct: 77  CRIGEGLDQALPDLTELILTNNSLVELG 104

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 105 DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISP 164
            L+  L+         +    R+L+L    I  IE      +     +D S++ +  +  
Sbjct: 3   KLTAELIEQAAQY--TNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL-- 57

Query: 165 EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
           + F   + L+++ +N NR+        + L  L  + L +N
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 14/105 (13%)

Query: 264 VEAVSSENATVVCRVDSIPPA---AISWYW-----------NGRLLLNNTAFSSYQRIFV 309
           + A+  + A + CR+     A    + WY            NG+      A     R  +
Sbjct: 16  IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTEL 75

Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           +++   E K +L + N + SD G + C   + +   +A   L+V 
Sbjct: 76  LKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 120

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 13/91 (14%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           V    +    + C+ +  P A + W  +   +L+    ++  +    E+  +   S+L +
Sbjct: 126 VVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKR---EEKLFNVTSTLRI 182

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                + +  FYC         +    L + 
Sbjct: 183 NT---TTNEIFYCTFRRLDPEENHTAELVIP 210

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 43.8 bits (103), Expect = 6e-05
 Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 15/104 (14%)

Query: 264 VEAVSSENATVVCRVDSIPPAA---ISWYW-----------NGRLLLNNTAFSSYQRIFV 309
                  N T+ C+           +  YW           +G   L     S  QR  +
Sbjct: 11  YVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARL 70

Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           ++       ++L +T+ +  D+G + C+  +  G      T++V
Sbjct: 71  LKDQLSLGNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKV 113

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 11/114 (9%), Positives = 34/114 (29%), Gaps = 23/114 (20%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAA----ISWYWNGRLLLNNTAFSSYQRIFVI 310
             + + S     ++ +  T+   V    P       +W  + +   NNT           
Sbjct: 3   FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT----------- 51

Query: 311 EQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGLPFLG 364
                   ++L + +A   ++G +    ++   +      + +      +  + 
Sbjct: 52  --------ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNIT 97

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 40.6 bits (94), Expect = 9e-04
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 13/91 (14%)

Query: 271 NATVVCRVDSIPPAAISWYW----NGRL---LLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           +  +V     +P   I + W     G+L   L+ +    + +   +   G       L  
Sbjct: 209 SEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDG------HLFK 262

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            +A   D+ +F+CVA+    I D    +  +
Sbjct: 263 ESATYDDTAKFWCVAKLYQQIEDETVEVAAS 293

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 20/104 (19%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
              +    R+V     +   + C          +++  NG+       +  +   F I  
Sbjct: 89  GWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKGR----KYFHHNSDFYI-- 141

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQVTY 355
                        A   DSG ++C     +         + +T 
Sbjct: 142 -----------PKATLKDSGSYFCRGLVGSKNVSSETVQITITQ 174

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 22/103 (21%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           K  + ++ ++   +  ++ T+ C+    P   +  W+ N  L+ +               
Sbjct: 7   KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA------------- 53

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
                 SS  +  A   DSG + C  +           L+V  
Sbjct: 54  ------SSYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHI 88

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 59  NNLQILPKEAFRRAGLLNLQKLFLARCHIGQID-SGALDGLTNLIEIDLSDNLLTSIPSL 117
             +  L  E  +                +   D     D + NL+ +D+S    T+IP  
Sbjct: 185 GAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF 244

Query: 118 TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVK-LDMSESRLEHISPEAFTGAKSLESI 176
           TF   ++L  + L  N +  I +  F     L   L++  S +  I   AF G  +L  +
Sbjct: 245 TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS-VTAIEFGAFMGCDNLRYV 302

Query: 177 KLNGNRLS 184
              G++++
Sbjct: 303 LATGDKIT 310

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 6/97 (6%)

Query: 89  QIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV-- 146
           + +  A      L        +   +     ++    RD+N       K++   F+ +  
Sbjct: 166 RWEHFAFIEGEPLETTIQVGAM-GKLEDEIMKAGLQPRDINFL-TIEGKLDNADFKLIRD 223

Query: 147 --PGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGN 181
             P LV LD+S++    I    F   K L  IKL  N
Sbjct: 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN 260

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 5/121 (4%)

Query: 59  NNLQILPKEAFR--RAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPS 116
                L    F+  R  + NL  L +++ +   I          L++I L  NL  +I  
Sbjct: 208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNL-KTIGQ 266

Query: 117 LTFQSVRFLRD-LNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLES 175
             F +   L   L L  + ++ IE GAF     L  +  +  ++  +  E F      + 
Sbjct: 267 RVFSNCGRLAGTLELPAS-VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325

Query: 176 I 176
           I
Sbjct: 326 I 326

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 32/206 (15%), Positives = 69/206 (33%), Gaps = 35/206 (16%)

Query: 52  QVLDMSGNNL-----QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGAL---DGL----T 99
             L++ GN+L       L  +        N+  L L   ++             L     
Sbjct: 141 TSLNLRGNDLGIKSSDEL-IQILAAIPA-NVNSLNLRGNNLA--SKNCAELAKFLASIPA 196

Query: 100 NLIEIDLSDNLLT-----SIPSLTFQSVRFLRDLNLARNPIS----KIEKGAFQFVPGLV 150
           ++  +DLS NLL       +  +       +  LNL  N +     +  K     +  L 
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 151 KLDMSESRLEHISPE-------AFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELH 203
            + +    ++++S E       AF   + +  +  NG  +       +  L++ +  +  
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA- 315

Query: 204 DNPWVCDCNMRSIKMW--LADKKNVP 227
           D P + +  +   +      +  N+P
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIP 341

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 33/161 (20%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLL-----NLQKLFLARCHIGQIDSGAL-DGL----TNL 101
             LD+S NNL                   ++  L L+   +G  +S  L   L     N+
Sbjct: 25  TSLDLSLNNLY--SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 102 IEIDLSDNLLTSI------PSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG------- 148
             ++LS N L+         +L       +  L+L  N  S   K + +F          
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFT-ITVLDLGWNDFS--SKSSSEFKQAFSNLPAS 139

Query: 149 LVKLDMSESRLEHISPEAFTGA-----KSLESIKLNGNRLS 184
           +  L++  + L   S +           ++ S+ L GN L+
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 28/150 (18%), Positives = 43/150 (28%), Gaps = 40/150 (26%)

Query: 52  QVLDMSGNNL-----QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGA------LDGLTN 100
             + M  N +     + L  E         L+ L L          G+      L    N
Sbjct: 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQ--ELKVLDLQDNTFT--HLGSSALAIALKSWPN 245

Query: 101 LIEIDLSDNLLTSI------PSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
           L E+ L+D LL++        + +      L+ L L  N I             +     
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE--LDAVRTLKTVID---- 299

Query: 155 SESRLEHISPEAFTGAKSLESIKLNGNRLS 184
                             L  ++LNGNR S
Sbjct: 300 -------------EKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 39/170 (22%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLL----NLQKLFLARCHIGQIDSGALDGL--------- 98
           + + +SGN   I  + A   +  +    +L+    +    G++     + L         
Sbjct: 35  KEIVLSGN--TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 99  -TNLIEIDLSDNLLTS--IPSLT--FQSVRFLRDLNLARNPIS-------------KIEK 140
              L  + LSDN         L         L  L L  N +                  
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN 152

Query: 141 GAFQFVPGLVKLDMSESRLE-----HISPEAFTGAKSLESIKLNGNRLSH 185
              +  P L  +    +RLE       + + F   + L ++K+  N +  
Sbjct: 153 KKAKNAPPLRSIICGRNRLENGSMKEWA-KTFQSHRLLHTVKMVQNGIRP 201

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 21/124 (16%)

Query: 250 DFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAA----ISW---------------YW 290
           DFA    I      +E    E A + C+    P       I W                +
Sbjct: 1   DFARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILY 60

Query: 291 NGRLLLNNTAFSSYQ-RIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANF 349
           +G  + ++  +   + R+           +S+ +TN Q SD G + C  +   G+A+   
Sbjct: 61  SGDKIYDDY-YPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKI 119

Query: 350 TLQV 353
            L V
Sbjct: 120 HLVV 123

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 6/103 (5%)

Query: 253 CKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
            +    +  + VE  + + AT  C       A    +  G     +   +  + I V   
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQG----IDVRDAPLKEIKVTSS 218

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
             +   +S  + N  + D+G++ C+     G+  +N+   V  
Sbjct: 219 RRFI--ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 259

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 46.0 bits (108), Expect = 9e-06
 Identities = 20/115 (17%), Positives = 30/115 (26%), Gaps = 24/115 (20%)

Query: 246 LHADDFACKPEIRMDSRYVEAVSSENATVVCRV----DSIPPAAISWYWNGRLLLNNTAF 301
           L       KP+I                + C +    ++ PP   SW  N    L+    
Sbjct: 118 LEVTALIEKPDIHFLEPLES---GRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETT 174

Query: 302 SSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI--ADANFTLQVT 354
            S               S L LT   E       C  + +      +    L V+
Sbjct: 175 RS---------------SELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNVS 214

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 34/159 (21%)

Query: 52  QVLDMSGNNLQILPKEAFRR--AGLLNLQKLFLARCHIGQIDSGAL---DGL----TNLI 102
             ++++   L        R      L  +KL L    +G          D L      + 
Sbjct: 104 DEVNLASCQLD---PAGLRTLLPVFLRARKLGLQLNSLG--PEACKDLRDLLLHDQCQIT 158

Query: 103 EIDLSDNLLTSI------PSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG------LV 150
            + LS+N LT+         L       +  L+L    +   ++G             L 
Sbjct: 159 TLRLSNNPLTAAGVAVLMEGL--AGNTSVTHLSLLHTGLG--DEGLELLAAQLDRNRQLQ 214

Query: 151 KLDMSESRLEHISPEAFTGA----KSLESIKLNGNRLSH 185
           +L+++ +     +  A   A     SLE + L  N LS 
Sbjct: 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 74  LLNLQKLFLARCHIGQID--SGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLA 131
           +  L  L L+   + ++D  S  +    NL  ++LS N L S   L       L +L L 
Sbjct: 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 228

Query: 132 RNPISKIEKG-------AFQFVPGLVKLDMSESR 158
            N +    +          +  P L++LD  E  
Sbjct: 229 GNSLCDTFRDQSTYISAIRERFPKLLRLDGHELP 262

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 4/89 (4%)

Query: 90  IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
           +         NL + DLS   +T +P+ TF     + ++ L    + +I   AF     L
Sbjct: 171 LKEDIFYYCYNLKKADLSKTKITKLPASTFVYAG-IEEVLLPVT-LKEIGSQAFLKTSQL 228

Query: 150 VKLDMSESRLEHISPEAFTGAKSLESIKL 178
             +++ E+ +  I  EAF     + ++KL
Sbjct: 229 KTIEIPEN-VSTIGQEAFRE-SGITTVKL 255

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 7/123 (5%)

Query: 59  NNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLT 118
           + L+ L ++ F      NL+K  L++  I ++ +        + E+ L   L   I S  
Sbjct: 166 STLEQLKEDIF--YYCYNLKKADLSKTKITKLPASTFVY-AGIEEVLLPVTL-KEIGSQA 221

Query: 119 FQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKL 178
           F     L+ + +  N +S I + AF+   G+  + +    + +I+  AF     L  +  
Sbjct: 222 FLKTSQLKTIEIPEN-VSTIGQEAFRES-GITTVKLPNG-VTNIASRAFYYCPELAEVTT 278

Query: 179 NGN 181
            G+
Sbjct: 279 YGS 281

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 8/94 (8%)

Query: 90  IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL-----ARNPISKIEKGAFQ 144
           I   A    + +  + L + + T+I S  F     L ++         +P + I     +
Sbjct: 240 IGQEAFRE-SGITTVKLPNGV-TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297

Query: 145 FVPGLVKLDMSESRLEHISPEAFTGAKSLESIKL 178
             P L + ++ ES +  +      G + +  + +
Sbjct: 298 GCPKLARFEIPES-IRILGQGLLGGNRKVTQLTI 330

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 264 VEAVSSENATVVCRVDSIPPA--------------AISWYWNGRLLLNNTAFSSYQRIFV 309
           + A+  E+A + C +     A               ++ Y +G+ + +  +     R  +
Sbjct: 14  ILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSI 73

Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
           +  G    K++L + N   SDSG++ C  ++      A   L+V   G
Sbjct: 74  LRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALG 121

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 14/148 (9%)

Query: 196 KLMMIELHDNPWVCDCN--MRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFAC 253
            ++   L        C   + +   + A         A    E  S  +  ++  D   C
Sbjct: 473 GVVQAPLAFCGKHGTCEDCVLARDPYCAWSPPTATCVALHQTESPSRGLIQEMSGDASVC 532

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
             + +   R         A + C   S   A + W +   +L       S +   +  + 
Sbjct: 533 PDKSKGSYRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAE----SPKYGLMGRKN 587

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENR 341
                  L++ N  E DSG + C++E R
Sbjct: 588 -------LLIFNLSEGDSGVYQCLSEER 608

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 43.1 bits (101), Expect = 7e-05
 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 264 VEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS--- 319
           V  +  E+ T+     +      I+W +N   L       +      +   +  ++    
Sbjct: 8   VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT 67

Query: 320 ---SLVLTNAQESDSGRFYCVAENRAGIADANFTLQ 352
              SL L+N +  D+G +      +     +++TL+
Sbjct: 68  QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLR 103

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 12/77 (15%), Positives = 18/77 (23%), Gaps = 20/77 (25%)

Query: 267 VSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA 326
               NAT+ C V       +  Y     L +                         ++  
Sbjct: 113 WECSNATLTCEVLEGTDVELKLYQGKEHLRSL--------------------RQKTMSYQ 152

Query: 327 QESDSGRFYCVAENRAG 343
             +    F C A NR  
Sbjct: 153 WTNLRAPFKCKAVNRVS 169

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 12/98 (12%)

Query: 264 VEAVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYER---- 317
           + A    +  + C + S       ++W    +      A  +    + I     +R    
Sbjct: 13  ISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQ----LLAICNADLGWHISPSFKDRVAPG 68

Query: 318 -KSSLVLTNAQESDSGRFYC-VAENRAGIADANFTLQV 353
               L L +   +D+G ++C       G       L+V
Sbjct: 69  PGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 17/112 (15%), Positives = 38/112 (33%), Gaps = 5/112 (4%)

Query: 244 SDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLL--NNTAF 301
               AD    + + +  +     V+     + C+V     +++ W    +  L       
Sbjct: 28  DKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRA 87

Query: 302 SSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
               RI ++    +E   S+ ++N   +D G + C       +  A   + V
Sbjct: 88  LRDNRIQLVTSTPHE--LSISISNVALADEGEYTCSI-FTMPVRTAKSLVTV 136

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 42.2 bits (98), Expect = 3e-04
 Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 13/89 (14%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCR-VDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
            P   +    + ++  ++ T+ C  V+    A + W             S   R   +  
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAG-----SHPSRWAGMG- 59

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENR 341
                   L+L + Q  DSG + C    R
Sbjct: 60  ------RRLLLRSVQLHDSGNYSCYRAGR 82

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus} Length = 115

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 22/108 (20%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYW-----------------NGRLLLNNTAFSSYQR 306
           V+ ++    T+ C   +     +   W                 NG  + +    S YQ 
Sbjct: 7   VQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRN-SRYQL 65

Query: 307 IFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
              I +G      SL + N    D G + CV E        ++ L+V 
Sbjct: 66  KGNISEGNV----SLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVK 109

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 12/88 (13%), Positives = 19/88 (21%), Gaps = 20/88 (22%)

Query: 267 VSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA 326
               NAT+ C V       +  Y     L +                         ++  
Sbjct: 103 WECSNATLTCEVLEGTDVELKLYQGKEHLRSL--------------------RQKTMSYQ 142

Query: 327 QESDSGRFYCVAENRAGIADANFTLQVT 354
             +    F C A NR         +   
Sbjct: 143 WTNLRAPFKCKAVNRVSQESEMEVVNCP 170

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 14/99 (14%)

Query: 270 ENATVVCRVDSIPPA-----AISWYW----NGRLLL-----NNTAFSSYQRIFVIEQGEY 315
           +N T+ C +    P       I+W+W      + +       +   +      V      
Sbjct: 19  DNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLK 78

Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
              +SL L   Q  ++G + C        A     L+V 
Sbjct: 79  SGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVV 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	600
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	100.0
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.96
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.95
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.95
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.92
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.9
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.81
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.81
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.79
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.79
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.79
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.76
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.76
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.75
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.73
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.73
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.72
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.71
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.71
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.7
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.7
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.69
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.69
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.69
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.68
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.68
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.68
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.67
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.66
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.66
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.65
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.65
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.64
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.63
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.63
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.63
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.63
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.63
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.61
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.6
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.6
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.6
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.6
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.58
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.57
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.57
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.57
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.57
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.57
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.56
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.55
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.55
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.54
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.54
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.54
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.53
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.53
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.53
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.53
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.5
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.5
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.48
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.47
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.47
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.46
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.42
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.42
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.42
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.4
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.4
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.39
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.38
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.36
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.34
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.28
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.27
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.24
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.23
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.23
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.22
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.22
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.2
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.2
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.19
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.19
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.18
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.18
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.18
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.17
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.17
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.17
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.17
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.16
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.15
1he7_A	126	High affinity nerve growth factor receptor; transf	99.15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.15
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.14
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.14
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.13
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.13
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.12
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.11
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.11
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.11
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.11
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.11
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.09
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.08
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.08
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.06
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.03
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.02
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.02
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.01
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.98
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	98.98
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	98.97
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.97
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	98.94
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.94
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	98.93
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	98.93
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	98.92
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.92
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.91
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	98.9
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	98.9
2ens_A	96	Advanced glycosylation END product-specific recept	98.89
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	98.89
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	98.88
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.88
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	98.87
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	98.87
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	98.86
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	98.84
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.82
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	98.81
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	98.81
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.8
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	98.79
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	98.79
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	98.78
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.77
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	98.76
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.76
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.74
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	98.74
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	98.74
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	98.74
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.73
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.73
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.72
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.72
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.72
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	98.71
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.71
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	98.7
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.69
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.69
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	98.68
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	98.68
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	98.67
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	98.67
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.67
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.66
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.66
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	98.66
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.65
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	98.65
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	98.64
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.64
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.64
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	98.63
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.63
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.62
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.62
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	98.62
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.62
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.61
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	98.61
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.61
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.61
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.6
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	98.6
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.6
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	98.6
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.6
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.59
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.58
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.58
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.58
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	98.57
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.56
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	98.56
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.56
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.55
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	98.55
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.54
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.54
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.53
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.52
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.52
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.51
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.51
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.51
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.5
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.5
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	98.5
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.49
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.48
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.48
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.48
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	98.48
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.47
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	98.47
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	98.47
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	98.46
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.45
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	98.45
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.45
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.43
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.43
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.42
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	98.42
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.42
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	98.42
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	98.41
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.41
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.41
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	98.4
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.4
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	98.39
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.39
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	98.39
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.39
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.39
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.38
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	98.38
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.37
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.37
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	98.37
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.36
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.36
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.36
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.36
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.36
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.36
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	98.35
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	98.35
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	98.34
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.34
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.33
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.33
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	98.33
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.33
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.33
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.33
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.33
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	98.32
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.32
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.32
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.32
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	98.31
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	98.31
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.29
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	98.29
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	98.29
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.28
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.28
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	98.28
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	98.28
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.28
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	98.28
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.27
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	98.27
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	98.27
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	98.27
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.26
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	98.26
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.26
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.26
3khq_A	133	B-cell antigen receptor complex-associated protei	98.25
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.25
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.25
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	98.25
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.24
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	98.24
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.24
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	98.23
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.23
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	98.23
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.23
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.23
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.23
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	98.22
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	98.22
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	98.22
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.21
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	98.21
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	98.21
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.21
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.21
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	98.21
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.21
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.2
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.2
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.2
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.19
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.18
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	98.18
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	98.18
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.17
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	98.17
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.16
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.16
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	98.16
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.15
1xt5_A	135	Variable region-containing chitin-binding protein	98.14
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.14
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.14
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.14
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	98.14
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.14
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.13
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.13
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.13
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	98.13
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.13
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.12
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	98.12
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.12
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.12
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.12
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.12
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	98.12
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.11
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	98.1
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.1
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	98.09
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.09
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.08
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.08
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.08
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.08
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	98.07
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.07
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	98.06
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	98.06
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	98.06
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	98.06
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.06
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	98.06
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	98.05
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	98.05
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	98.04
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.03
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.03
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.03
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.03
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	98.02
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.02
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.02
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	98.01
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.01
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.01
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	98.01
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	98.0
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.0
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.0
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.0
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.0
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.0
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.0
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.0
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	97.99
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	97.99
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	97.99
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	97.99
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	97.98
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	97.98
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	97.98
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	97.98
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	97.98
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	97.98
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	97.97
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	97.97
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	97.96
3sob_L	237	Antibody light chain; beta propeller, protein bind	97.96
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	97.96
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	97.95
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	97.95
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	97.95
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	97.94
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	97.94
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	97.94
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	97.93
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	97.93
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	97.92
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.92
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	97.92
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	97.92
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	97.92
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	97.91
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	97.91
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	97.91
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	97.9
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	97.9
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	97.9
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	97.89
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	97.89
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	97.89
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	97.88
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	97.88
3sob_L	237	Antibody light chain; beta propeller, protein bind	97.88
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	97.88
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	97.87
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	97.87
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	97.86
3umt_A	256	SCFV heavy chain and light chain; stability engine	97.86
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	97.86
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	97.86
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	97.85
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	97.85
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	97.85
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	97.85
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	97.84
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	97.84
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	97.84
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	97.84
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.83
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	97.83
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	97.81
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	97.81
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	97.81
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	97.81
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	97.81
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	97.8

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=100.00  E-value=6.9e-42  Score=369.63  Aligned_cols=329  Identities=33%  Similarity=0.556  Sum_probs=248.2

Q ss_pred             CCCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCcc
Q psy1672          14 VSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSG   93 (600)
Q Consensus        14 ~~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~   93 (600)
                      ...||..|.|...  ...++|.+.+|+.+|..++.. ++.|+|++|+|+.++...|.  ++.+|+.|+|++|.|..+.+.
T Consensus        32 ~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~-l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~  106 (440)
T 3zyj_A           32 AQTCPSVCSCSNQ--FSKVICVRKNLREVPDGISTN-TRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIG  106 (440)
T ss_dssp             -CCCCSSSEECTT--SCEEECCSCCCSSCCSCCCTT-CSEEECCSCCCCEECTTTTS--SCSSCCEEECCSSCCCEECGG
T ss_pred             cccCCCCCEeCCC--CCEEEeCCCCcCcCCCCCCCC-CcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCCcCCccChh
Confidence            3589999999854  357999999999999988876 89999999999888877776  788888888888888887777


Q ss_pred             ccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCc---------------------------------
Q psy1672          94 ALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEK---------------------------------  140 (600)
Q Consensus        94 ~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~---------------------------------  140 (600)
                      +|.++++|++|+|++|.|+.++...|..+++|++|+|++|.++.+..                                 
T Consensus       107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~  186 (440)
T 3zyj_A          107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN  186 (440)
T ss_dssp             GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred             hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence            77777777777777777777776666666666666666665544332                                 


Q ss_pred             --------------------------------------ccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCc
Q psy1672         141 --------------------------------------GAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNR  182 (600)
Q Consensus       141 --------------------------------------~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~  182 (600)
                                                            ..|..+++|+.|+|++|+|..+.+..|.++++|+.|+|++|+
T Consensus       187 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          187 LRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             CCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred             cCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence                                                  223333334444444444444445556667788888888888


Q ss_pred             CCCCCcccccccccccEEEccCCcCccccccccchhhhcccCCCC--CCCCCCCCccccccccccccccccCcc-ccccc
Q psy1672         183 LSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVP--VQPACTGPERLSGKVFSDLHADDFACK-PEIRM  259 (600)
Q Consensus       183 l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~~~--~~~~C~~p~~l~g~~l~~l~~~~~~C~-p~i~~  259 (600)
                      |+.++...|..+++|+.|++.+|||.|||++.|+..|+.+.....  ....|..|..+.|+.+..++...+.|. |.+..
T Consensus       267 l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~~P~i~~  346 (440)
T 3zyj_A          267 LTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVE  346 (440)
T ss_dssp             CCCCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCSCCCCCCEEE
T ss_pred             CCccChhHhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhccCCCCcccc
Confidence            888888888889999999999999999999999999998543222  346899999999999999999999995 55556


Q ss_pred             ccccccccccccceeeeEeecCCCCeeEEEEc-CeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWN-GRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      .+..+.+.+|+.++|.|.+ +.|.|.+.|+++ +..+....   ...++.+..++      .|.|.+++.+|+|.|+|+|
T Consensus       347 ~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~---~~~~~~~~~~~------~L~I~~v~~~D~G~Y~C~a  416 (440)
T 3zyj_A          347 PPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGA---YKVRIAVLSDG------TLNFTNVTVQDTGMYTCMV  416 (440)
T ss_dssp             CCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSS---CCSSEEECTTC------CEEESSCCSTTCEEEEEEE
T ss_pred             cccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccC---CCceEEEccCC------eEEEccCChhhCEEEEEEE
Confidence            6778889999999999999 679999999994 44433221   12344444444      6999999999999999999


Q ss_pred             ecCCCceeEEEEEEEEEcc
Q psy1672         339 ENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       339 ~N~~G~~~~~v~L~V~~~~  357 (600)
                      +|.+|.+++++.+.|.+.+
T Consensus       417 ~N~~G~~~~~~~~~v~~~~  435 (440)
T 3zyj_A          417 SNSVGNTTASATLNVTGTH  435 (440)
T ss_dssp             ECSSCEEEEEEEEEEC---
T ss_pred             EcCCCcEEEEEEEEEeccc
Confidence            9999999999999886543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=100.00  E-value=9.1e-42  Score=369.96  Aligned_cols=328  Identities=33%  Similarity=0.575  Sum_probs=252.3

Q ss_pred             CCCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCcc
Q psy1672          14 VSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSG   93 (600)
Q Consensus        14 ~~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~   93 (600)
                      ...||..|.|.+.  ...++|.+.+++.+|..++.. +++|+|++|+|+.++...|.  ++.+|+.|+|++|.|+.+.+.
T Consensus        43 ~~~Cp~~C~C~~~--~~~v~c~~~~l~~iP~~~~~~-l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~  117 (452)
T 3zyi_A           43 PQNCPSVCSCSNQ--FSKVVCTRRGLSEVPQGIPSN-TRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVG  117 (452)
T ss_dssp             -CCCCTTSEECSS--SCEEECCSSCCSSCCSCCCTT-CSEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTT
T ss_pred             cCCCCCCCEECCC--CcEEEECCCCcCccCCCCCCC-ccEEECcCCcCceECHHHcC--CCCCCCEEECCCCccCCcChh
Confidence            3489999999854  357999999999999988876 99999999999988877776  788888888888888888777


Q ss_pred             ccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCc---------------------------------
Q psy1672          94 ALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEK---------------------------------  140 (600)
Q Consensus        94 ~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~---------------------------------  140 (600)
                      +|.++++|++|+|++|.|+.++...|..+++|++|+|++|.++.++.                                 
T Consensus       118 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~  197 (452)
T 3zyi_A          118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN  197 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred             hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence            77777788888887777777776666666666666666665554433                                 


Q ss_pred             --------------------------------------ccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCc
Q psy1672         141 --------------------------------------GAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNR  182 (600)
Q Consensus       141 --------------------------------------~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~  182 (600)
                                                            ..|..+++|+.|+|++|++..+.+..|.++++|+.|+|++|+
T Consensus       198 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          198 LKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             CCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence                                                  223333444444444444445555566677888888888888


Q ss_pred             CCCCCcccccccccccEEEccCCcCccccccccchhhhcccCCCC--CCCCCCCCccccccccccccccccCcc-ccccc
Q psy1672         183 LSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVP--VQPACTGPERLSGKVFSDLHADDFACK-PEIRM  259 (600)
Q Consensus       183 l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~~~--~~~~C~~p~~l~g~~l~~l~~~~~~C~-p~i~~  259 (600)
                      |+.++...|..+++|+.|++.+|+|.|+|++.|+..|+.+.....  ....|..|..+.|+.+..++...+.|. |.+..
T Consensus       278 l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~P~i~~  357 (452)
T 3zyi_A          278 LSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMD  357 (452)
T ss_dssp             CSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGGGCCCCCCCCSB
T ss_pred             CCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchhhhcccCccccc
Confidence            888888888889999999999999999999999999988543221  346899999999999999998899995 55555


Q ss_pred             ccccccccccccceeeeEeecCCCCeeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPPAAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      .+..+.+.+|+.++|.|.+.  |.|+|.|++ ++..+....   ...++.+..++      .|.|.+++.+|+|.|+|+|
T Consensus       358 ~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~---~~~~~~~~~~g------~L~i~~v~~~D~G~Y~C~a  426 (452)
T 3zyi_A          358 APRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHAS---RHPRISVLNDG------TLNFSHVLLSDTGVYTCMV  426 (452)
T ss_dssp             CCCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSC---CCSSCEECTTS------CEECSSCCTTCCEEEEEEE
T ss_pred             ccccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCC---CCCCEEECCCC------eEEEeecCHHHCEEEEEEE
Confidence            67778899999999999998  999999999 444443321   12244444444      7999999999999999999


Q ss_pred             ecCCCceeEEEEEEEEEcc
Q psy1672         339 ENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       339 ~N~~G~~~~~v~L~V~~~~  357 (600)
                      +|.+|.+++++.|.|...+
T Consensus       427 ~N~~G~~~~~~~l~v~~~~  445 (452)
T 3zyi_A          427 TNVAGNSNASAYLNVSTAG  445 (452)
T ss_dssp             ECSSCEEEEEEEEEC----
T ss_pred             EcCCCcEEEEEEEEEEccc
Confidence            9999999999999986544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=100.00  E-value=1.6e-40  Score=349.69  Aligned_cols=319  Identities=26%  Similarity=0.410  Sum_probs=270.0

Q ss_pred             cCCCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCc
Q psy1672          13 SVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS   92 (600)
Q Consensus        13 ~~~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~   92 (600)
                      +...||..|.|.+    .+++|.+++|+.+|..++.. ++.|+|++|+|+.++...|. .++.+|+.|+|++|+|+.+.+
T Consensus         8 ~~~~Cp~~C~C~~----~~l~c~~~~l~~iP~~~~~~-l~~L~Ls~N~l~~l~~~~~~-~~l~~L~~L~L~~N~i~~i~~   81 (361)
T 2xot_A            8 SVVSCPANCLCAS----NILSCSKQQLPNVPQSLPSY-TALLDLSHNNLSRLRAEWTP-TRLTNLHSLLLSHNHLNFISS   81 (361)
T ss_dssp             CCTTCCTTCEEET----TEEECCSSCCSSCCSSCCTT-CSEEECCSSCCCEECTTSSS-SCCTTCCEEECCSSCCCEECT
T ss_pred             cCCCCCCCCEECC----CEEEeCCCCcCccCccCCCC-CCEEECCCCCCCccChhhhh-hcccccCEEECCCCcCCccCh
Confidence            4568999999984    57999999999999988876 99999999999999988773 158999999999999999999


Q ss_pred             cccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhh---cC
Q psy1672          93 GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAF---TG  169 (600)
Q Consensus        93 ~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~---~~  169 (600)
                      .+|.++++|++|+|++|.|+.+++..|..+++|+.|+|++|.|+.+.+..|..+++|+.|+|++|+|+.++...|   ..
T Consensus        82 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~  161 (361)
T 2xot_A           82 EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK  161 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred             hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence            999999999999999999999999899999999999999999999999999999999999999999999988877   56


Q ss_pred             CCCCCEEEcCCCcCCCCCccccccccc--ccEEEccCCcCccccccccc-hhhhcccC----CCCCCCCCCCCccccccc
Q psy1672         170 AKSLESIKLNGNRLSHFPVRSVEPLLK--LMMIELHDNPWVCDCNMRSI-KMWLADKK----NVPVQPACTGPERLSGKV  242 (600)
Q Consensus       170 l~~L~~L~Ls~N~l~~l~~~~~~~l~~--L~~L~l~~N~~~C~C~l~~l-~~w~~~~~----~~~~~~~C~~p~~l~g~~  242 (600)
                      +++|+.|+|++|.|+.++...+..++.  ++.|++.+|+|.|+|.+.|+ ..|.....    .......|..|..+.+. 
T Consensus       162 l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~-  240 (361)
T 2xot_A          162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNI-  240 (361)
T ss_dssp             CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTTGGGCEEESSSCCEEG-
T ss_pred             CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhccCcCCEeCCChHHcCc-
Confidence            999999999999999999888888776  48899999999999999986 67876432    12246789988766432 


Q ss_pred             cccccccccCcccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEE
Q psy1672         243 FSDLHADDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV  322 (600)
Q Consensus       243 l~~l~~~~~~C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~  322 (600)
                       .  ....+.|.+   ..+..+++.+|+.++|.|.+.| |.|.|.|++++..+....  ....++.+ .++      .|.
T Consensus       241 -~--~~~~~~C~~---~~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~--~~~~r~~~-~~~------~L~  304 (361)
T 2xot_A          241 -F--SLDFFNCSE---YKESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQ--GSNGSVSV-RNG------DLF  304 (361)
T ss_dssp             -G--GCCCTTCCS---CCCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSC--CSSSSEEE-ETT------EEE
T ss_pred             -c--ccccccCCC---ccccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeec--ccCCceEe-ecC------eEE
Confidence             2  223667876   3355678899999999999999 999999999665443222  11234444 444      799


Q ss_pred             EecCCCCCCeEEEEEEecCCCceeEEEEEEEE
Q psy1672         323 LTNAQESDSGRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       323 I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |.+++.+|+|.|+|+|.|..|.++..+.+.|.
T Consensus       305 I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  336 (361)
T 2xot_A          305 FKKVQVEDGGVYTCYAMGETFNETLSVELKVY  336 (361)
T ss_dssp             ESSCCTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EeecCcccCEEEEEEEecCCCccEEEEEEEEE
Confidence            99999999999999999999999999888884

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=9.4e-38  Score=340.45  Aligned_cols=326  Identities=29%  Similarity=0.483  Sum_probs=235.8

Q ss_pred             CCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccc
Q psy1672          15 SSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGA   94 (600)
Q Consensus        15 ~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~   94 (600)
                      .+||..|.|...  ...++|.+.+++.+|..++.. +++|+|++|+|+.++...|.  .+.+|+.|+|++|.++.+.+.+
T Consensus         1 ~~Cp~~C~C~~~--~~~v~c~~~~l~~ip~~~~~~-l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~   75 (477)
T 2id5_A            1 TGCPPRCECSAQ--DRAVLCHRKRFVAVPEGIPTE-TRLLDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGA   75 (477)
T ss_dssp             CCCSTTCEEETT--TTEEECCSCCCSSCCSCCCTT-CSEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTT
T ss_pred             CcccCCCeECCC--CCEEEeCCCCcCcCCCCCCCC-CcEEECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChhh
Confidence            379999999743  367999999999999988776 99999999999998877776  7888888888888888887777


Q ss_pred             cCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcc------------------------cccCCC---
Q psy1672          95 LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKG------------------------AFQFVP---  147 (600)
Q Consensus        95 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~------------------------~~~~l~---  147 (600)
                      |.++++|++|+|++|.|+.++...|..+++|++|+|++|.+..+.+.                        .|..++   
T Consensus        76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  155 (477)
T 2id5_A           76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE  155 (477)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred             hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence            88888888888888887777766666666666666665554433222                        222222   


Q ss_pred             --------------------------------------------------------------------------------
Q psy1672         148 --------------------------------------------------------------------------------  147 (600)
Q Consensus       148 --------------------------------------------------------------------------------  147 (600)
                                                                                                      
T Consensus       156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  235 (477)
T 2id5_A          156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN  235 (477)
T ss_dssp             EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred             EEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence                                                                                            


Q ss_pred             -------------CcceeeCCCCcCcccC------------------------hhhhcCCCCCCEEEcCCCcCCCCCccc
Q psy1672         148 -------------GLVKLDMSESRLEHIS------------------------PEAFTGAKSLESIKLNGNRLSHFPVRS  190 (600)
Q Consensus       148 -------------~L~~L~Ls~n~l~~i~------------------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~  190 (600)
                                   +|+.|+|++|.+..+.                        +..|..+++|+.|+|++|.|+.++...
T Consensus       236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  315 (477)
T 2id5_A          236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV  315 (477)
T ss_dssp             CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred             ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence                         2222222222222221                        223334455666666666666666667


Q ss_pred             ccccccccEEEccCCcCccccccccchhhhcccCCCCCCCCCCCCccccccccccccc----cccCccc-ccccc-cccc
Q psy1672         191 VEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHA----DDFACKP-EIRMD-SRYV  264 (600)
Q Consensus       191 ~~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~~~~~~~C~~p~~l~g~~l~~l~~----~~~~C~p-~i~~~-~~~~  264 (600)
                      |..+++|+.|++.+|+|.|+|.+.|+..|............|..|..+.|+.+.++..    +.+.|.+ .+... +..+
T Consensus       316 ~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P~i~~~~~~~~  395 (477)
T 2id5_A          316 FHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQV  395 (477)
T ss_dssp             BSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEEEESCCSCEEE
T ss_pred             cCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchHHcCCchhhCccccccceeEeccccccccccccE
Confidence            7778899999999999999999999888765222222467899999999999877654    3577853 33332 4677


Q ss_pred             cccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      .+.+|+.+++.|.+.|.|.|.|.|+++++.+....   ...++.+..++      .|.|.+++.+|+|.|+|+|.|..|.
T Consensus       396 ~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~---~~~~~~~~~~~------~L~i~~v~~~d~G~Y~C~a~N~~g~  466 (477)
T 2id5_A          396 FVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAK---SNGRLTVFPDG------TLEVRYAQVQDNGTYLCIAANAGGN  466 (477)
T ss_dssp             EEETTCCEEECCCEEEESCCEEEEECTTSCBC----------CEECTTS------CEEESSCCSTTCEEEEEEEEETTEE
T ss_pred             EEeCCCeEEEEEeccccCCCEEEEEECCccccccC---CCceEEeCCCC------EEEEeeCChHHCEEEEEEEEeCCCc
Confidence            88999999999999999999999999887654321   12233333333      7999999999999999999999999


Q ss_pred             eeEEEEEEEE
Q psy1672         345 ADANFTLQVT  354 (600)
Q Consensus       345 ~~~~v~L~V~  354 (600)
                      +++.+.+.|.
T Consensus       467 ~~~~~~l~V~  476 (477)
T 2id5_A          467 DSMPAHLHVR  476 (477)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEe
Confidence            9888888774

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.96  E-value=2.4e-29  Score=245.65  Aligned_cols=212  Identities=25%  Similarity=0.511  Sum_probs=160.8

Q ss_pred             CCCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCcc
Q psy1672          14 VSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSG   93 (600)
Q Consensus        14 ~~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~   93 (600)
                      ...||..|.|.+    ..++|.+.+++.+|..++.. ++.|+|++|.|+.++...|.  .+.+|+.|+|++|.|+.+.+.
T Consensus         2 ~~~CP~~C~C~~----~~v~c~~~~l~~iP~~l~~~-l~~L~l~~n~i~~i~~~~~~--~l~~L~~L~Ls~N~i~~~~~~   74 (220)
T 2v9t_B            2 SLHCPAACTCSN----NIVDCRGKGLTEIPTNLPET-ITEIRLEQNTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPD   74 (220)
T ss_dssp             CCCSCTTSEEET----TEEECTTSCCSSCCSSCCTT-CCEEECCSSCCCEECTTSST--TCTTCCEEECCSSCCCEECTT
T ss_pred             CCCCCCCCEECC----CEEEcCCCCcCcCCCccCcC-CCEEECCCCcCCCcCHhHhh--CCCCCCEEECCCCcCCCcCHH
Confidence            468999999985    56999999999999887755 88888888888888777665  677777777777777777666


Q ss_pred             ccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCC
Q psy1672          94 ALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSL  173 (600)
Q Consensus        94 ~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L  173 (600)
                      +|.++++|++|+|++|.|+.++...|..+++|++|+|++|.++.+.+                        ..|..+++|
T Consensus        75 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~------------------------~~~~~l~~L  130 (220)
T 2v9t_B           75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV------------------------DAFQDLHNL  130 (220)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------TTTTTCTTC
T ss_pred             HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH------------------------HHcCCCCCC
Confidence            67777777777777777776666556666666666666665555544                        445555566


Q ss_pred             CEEEcCCCcCCCCCcccccccccccEEEccCCcCccccccccchhhhcccCCCCCCCCCCCCccccccccccccccccCc
Q psy1672         174 ESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFAC  253 (600)
Q Consensus       174 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~~~C  253 (600)
                      +.|+|++|.|+.++...|..+++|+.|++.+|+|.|+|.+.|+..|+...........|..|..++|+.+.++..++|.|
T Consensus       131 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~c  210 (220)
T 2v9t_B          131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRC  210 (220)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCCBCSCCBEEESGGGTTCBGGGSCGGGCCC
T ss_pred             CEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCCCCccCCCcCCchHHcCCchhhCCHHHCcC
Confidence            66666666666666666777788899999999999999999999998854433356789999999999999999999988


Q ss_pred             ccc
Q psy1672         254 KPE  256 (600)
Q Consensus       254 ~p~  256 (600)
                      ...
T Consensus       211 ~~~  213 (220)
T 2v9t_B          211 SAA  213 (220)
T ss_dssp             ---
T ss_pred             ccc
Confidence            643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.96  E-value=2.4e-28  Score=238.60  Aligned_cols=212  Identities=27%  Similarity=0.512  Sum_probs=154.2

Q ss_pred             CCCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCC-hhhhcccCCCCccEEEeecccCcccCc
Q psy1672          14 VSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILP-KEAFRRAGLLNLQKLFLARCHIGQIDS   92 (600)
Q Consensus        14 ~~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~-~~~f~~~~l~~L~~L~L~~n~l~~i~~   92 (600)
                      ..+||..|.|.|    ..++|.++.++.+|..++.. +++|+|++|.|+.++ ...|.  .+.+|+.|+|++|.|+.+.+
T Consensus         2 ~~~CP~~C~C~~----~~l~~s~n~l~~iP~~~~~~-~~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~L~~N~i~~i~~   74 (220)
T 2v70_A            2 SLACPEKCRCEG----TTVDCSNQKLNKIPEHIPQY-TAELRLNNNEFTVLEATGIFK--KLPQLRKINFSNNKITDIEE   74 (220)
T ss_dssp             --CCCTTCEEET----TEEECCSSCCSSCCSCCCTT-CSEEECCSSCCCEECCCCCGG--GCTTCCEEECCSSCCCEECT
T ss_pred             CCCCCCCCEECC----CEeEeCCCCcccCccCCCCC-CCEEEcCCCcCCccCchhhhc--cCCCCCEEECCCCcCCEECH
Confidence            458999999996    46999999999999877665 788888888888774 34454  56667777776666666666


Q ss_pred             cccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCC
Q psy1672          93 GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKS  172 (600)
Q Consensus        93 ~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~  172 (600)
                      .+|.++++|++|+|++|.|+.+++..|..+++|++|+|++|.++.+                        .+..|..+++
T Consensus        75 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------------------~~~~~~~l~~  130 (220)
T 2v70_A           75 GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV------------------------GNDSFIGLSS  130 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCB------------------------CTTSSTTCTT
T ss_pred             HHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeE------------------------CHhHcCCCcc
Confidence            6666666666666666666666555555555555555555555544                        4445555566


Q ss_pred             CCEEEcCCCcCCCCCcccccccccccEEEccCCcCccccccccchhhhcccCCCCCCCCCCCCccccccccccccccccC
Q psy1672         173 LESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFA  252 (600)
Q Consensus       173 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~~~  252 (600)
                      |+.|+|++|.|+.+.+..|..+++|+.|++.+|+|.|+|.+.|+..|+...........|..|..++|..+.+++...+.
T Consensus       131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~  210 (220)
T 2v70_A          131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFT  210 (220)
T ss_dssp             CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEESGGGTTEEGGGSCGGGCC
T ss_pred             CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCChHHCCCChhhCCHHHcc
Confidence            66666666666666666677778889999999999999999999999985443345678999999999999999988887


Q ss_pred             cccc
Q psy1672         253 CKPE  256 (600)
Q Consensus       253 C~p~  256 (600)
                      |...
T Consensus       211 ~~~~  214 (220)
T 2v70_A          211 CDDA  214 (220)
T ss_dssp             CCC-
T ss_pred             cccc
Confidence            7643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=1.6e-27  Score=241.78  Aligned_cols=234  Identities=32%  Similarity=0.609  Sum_probs=164.0

Q ss_pred             CCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCcccc
Q psy1672          16 SCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGAL   95 (600)
Q Consensus        16 ~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f   95 (600)
                      +||..|.|.... +..++|.+.+++.+|..++.. +++|+|++|.++.++...|.  .+.+|++|+|++|.++.+.+.+|
T Consensus         1 ~CP~~C~C~~~~-~~~~~c~~~~l~~ip~~~~~~-l~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~   76 (285)
T 1ozn_A            1 PCPGACVCYNEP-KVTTSCPQQGLQAVPVGIPAA-SQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAF   76 (285)
T ss_dssp             CCCTTCEEECSS-SCEEECCSSCCSSCCTTCCTT-CSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTT
T ss_pred             CcCCCceECCCC-CeEEEcCcCCcccCCcCCCCC-ceEEEeeCCcCCccCHHHcc--cCCCCCEEECCCCccceeCHhhc
Confidence            599999997543 578999999999999877765 88888888888888776665  66777777777776666655556


Q ss_pred             CCCCCccEEEccCCC-CCCCCccc------------------------cCCCCCCCEEEccCCCCCccCcccccCCCCcc
Q psy1672          96 DGLTNLIEIDLSDNL-LTSIPSLT------------------------FQSVRFLRDLNLARNPISKIEKGAFQFVPGLV  150 (600)
Q Consensus        96 ~~l~~L~~L~Ls~N~-l~~l~~~~------------------------f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~  150 (600)
                      .++++|++|+|++|. ++.+++..                        |..+++|++|+|++|.++.+.+..|..+++|+
T Consensus        77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  156 (285)
T 1ozn_A           77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT  156 (285)
T ss_dssp             TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence            666666666666664 55544434                        44455555555555555555555556666666


Q ss_pred             eeeCCCCcCcccChhhhcCCCCCCEEEcCC------------------------CcCCCCCcccccccccccEEEccCCc
Q psy1672         151 KLDMSESRLEHISPEAFTGAKSLESIKLNG------------------------NRLSHFPVRSVEPLLKLMMIELHDNP  206 (600)
Q Consensus       151 ~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~------------------------N~l~~l~~~~~~~l~~L~~L~l~~N~  206 (600)
                      .|+|++|+++.+++..|..+++|+.|+|++                        |.++.++...+..+++|+.|++.+|+
T Consensus       157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            666666666666554444444444444444                        44444444446667788899999999


Q ss_pred             CccccccccchhhhcccCCCCCCCCCCCCccccccccccccccccC-c
Q psy1672         207 WVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFA-C  253 (600)
Q Consensus       207 ~~C~C~l~~l~~w~~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~~~-C  253 (600)
                      |.|+|.+.|+..|+...........|..|..+.|..+.++...+|. |
T Consensus       237 ~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          237 WVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             EECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             ccCCCCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence            9999999999999885443335678999999999999988888774 6

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.95  E-value=8.4e-28  Score=250.84  Aligned_cols=317  Identities=19%  Similarity=0.221  Sum_probs=207.7

Q ss_pred             CCCCC-eecccCCceEEEccCC-CCCccCCCCCC-CCceEEEeeC-CCCCCCChhhhcccCCCCccEEEeecccCcccCc
Q psy1672          17 CPSTC-ICKWKGGKQWMECRDK-FLITIPEAPES-ELTQVLDMSG-NNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS   92 (600)
Q Consensus        17 Cp~~C-~C~~~~~~~~v~C~~~-~L~~ip~~~~~-~~l~~L~Ls~-n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~   92 (600)
                      ||..| .|.+    ..++|.+. +|+.||. +.. ..|+.|+|++ |.|+.++...|.  ++.+|+.|+|++|+|+.+++
T Consensus         1 cp~~c~~C~~----~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~   73 (347)
T 2ifg_A            1 CPDACCPHGS----SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAP   73 (347)
T ss_dssp             CCSSSCCSSS----SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECT
T ss_pred             CCCcCccccC----CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhc--cccCCCEEECCCCccceeCH
Confidence            99999 9985    35899998 9999999 543 4599999996 999999998887  89999999999999999999


Q ss_pred             cccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCccc-ccCCCCcceeeCCCCcCcccChhhhcCCC
Q psy1672          93 GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGA-FQFVPGLVKLDMSESRLEHISPEAFTGAK  171 (600)
Q Consensus        93 ~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~-~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~  171 (600)
                      .+|.+|++|++|+|++|+|+.+++..|..+. |+.|+|.+|.+...+... |..+.......+..+.+.+..+.      
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~------  146 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG------  146 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS------
T ss_pred             HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh------
Confidence            9999999999999999999999998888777 999999999998765421 22222222333444556665444      


Q ss_pred             CCCEEEcCCCcCCCCCcccccccccccEEEccCCcCccccccc--cchhhhcccCCCCC---CCCCCCCccccccccccc
Q psy1672         172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMR--SIKMWLADKKNVPV---QPACTGPERLSGKVFSDL  246 (600)
Q Consensus       172 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l~--~l~~w~~~~~~~~~---~~~C~~p~~l~g~~l~~l  246 (600)
                      .++.+.+..+....+.    ...........+.-.+.|.....  +...|+........   ...-.....+.-..+...
T Consensus       147 ~l~~l~~~~c~~P~i~----~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  222 (347)
T 2ifg_A          147 PLAHMPNASCGVPTLK----VQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSD  222 (347)
T ss_dssp             CSSCCCCTTCCCCEEE----EECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCST
T ss_pred             HHhcCCcccCCCCcee----ccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCChH
Confidence            2233333222221111    11112222222222344543322  23567764433210   000001111222222333


Q ss_pred             ccc-ccCccccc-------------ccccc--cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEe
Q psy1672         247 HAD-DFACKPEI-------------RMDSR--YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI  310 (600)
Q Consensus       247 ~~~-~~~C~p~i-------------~~~~~--~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~  310 (600)
                      +.. .+.|...-             ...+.  ...+..|+.++|.|.+.|.|.|.|.|+++|+.+....    .....+.
T Consensus       223 D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~----~~~~~~~  298 (347)
T 2ifg_A          223 LNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETS----FIFTEFL  298 (347)
T ss_dssp             TTTCCEEECCEETTEECCEEECCCCBEEEEEEECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCS----SEEEEEC
T ss_pred             HCCCeEEEEEEcCCCCEEEEEEEEEcCCCeeeeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCc----ceeeEEE
Confidence            334 45553211             11111  2345678999999999999999999999998877433    1122222


Q ss_pred             e--CCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEEEEEE
Q psy1672         311 E--QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       311 ~--~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      .  .+.....+.|.|.+++..|.|.|+|+|.|..|.+++.+.|.|..
T Consensus       299 ~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  345 (347)
T 2ifg_A          299 EPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD  345 (347)
T ss_dssp             CCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred             eecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence            2  12233467899999999999999999999999999888887743

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.95  E-value=2.1e-27  Score=236.57  Aligned_cols=204  Identities=28%  Similarity=0.530  Sum_probs=189.4

Q ss_pred             CCCCCC--CeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCc
Q psy1672          15 SSCPST--CICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS   92 (600)
Q Consensus        15 ~~Cp~~--C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~   92 (600)
                      .+||..  |.|...  ...++|.+.+++.+|..++.. ++.|+|++|.+..++...|.  ++.+|+.|+|++|.|+.+.+
T Consensus         2 ~~Cp~~~gC~C~~~--~~~l~~~~~~l~~~p~~~~~~-l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            2 KTCETVTGCTCNEG--KKEVDCQGKSLDSVPSGIPAD-TEKLDLQSTGLATLSDATFR--GLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             --CHHHHSSEEEGG--GTEEECTTCCCSSCCSCCCTT-CCEEECTTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCT
T ss_pred             ccCCCCCceEcCCC--CeEEecCCCCccccCCCCCCC-CCEEEccCCCcCccCHhHhc--CcccCCEEECCCCcCCccCH
Confidence            469976  999532  467999999999999988876 99999999999999988887  89999999999999999999


Q ss_pred             cccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCC
Q psy1672          93 GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKS  172 (600)
Q Consensus        93 ~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~  172 (600)
                      ..|..+++|++|+|++|.|+.++...|..+++|++|+|++|.++.+++..|..+++|+.|+|++|+|+.+++..|..+++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            99999999999999999999999989999999999999999999998888999999999999999999999888999999


Q ss_pred             CCEEEcCCCcCCCCCcccccccccccEEEccCCcCccc-cccccchhhhccc
Q psy1672         173 LESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCD-CNMRSIKMWLADK  223 (600)
Q Consensus       173 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~-C~l~~l~~w~~~~  223 (600)
                      |+.|+|++|.+..++...|..+++|+.|++.+|+|.|+ |.+.++..|+...
T Consensus       157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~  208 (251)
T 3m19_A          157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIREN  208 (251)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHS
T ss_pred             CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhc
Confidence            99999999999999988899999999999999999999 9999999998743

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.94  E-value=1.2e-26  Score=241.98  Aligned_cols=232  Identities=19%  Similarity=0.350  Sum_probs=181.1

Q ss_pred             EEEccCC-CCCCCCccccCCCCCCCEEEccC-CCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCC
Q psy1672         103 EIDLSDN-LLTSIPSLTFQSVRFLRDLNLAR-NPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNG  180 (600)
Q Consensus       103 ~L~Ls~N-~l~~l~~~~f~~l~~L~~L~Ls~-N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~  180 (600)
                      .++++++ .|+.+|.  +..+.+|+.|+|++ |.|+.+.+..|..+++|+.|+|++|+|+.+.+..|.++++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4567776 7777776  67777788888875 888888777788888888888888888888888888888888888888


Q ss_pred             CcCCCCCcccccccccccEEEccCCcCccccccccchhhhcccCCC-C-CCCCCCCCccccccccccccccccCc-cccc
Q psy1672         181 NRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNV-P-VQPACTGPERLSGKVFSDLHADDFAC-KPEI  257 (600)
Q Consensus       181 N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~~-~-~~~~C~~p~~l~g~~l~~l~~~~~~C-~p~i  257 (600)
                      |+|+.++...|..+. |+.|++.+|+|.|+|.+.|+..|+...... . ..+.|..+..+.     .+.  .+.| .|.+
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~-----~l~--~~~c~~P~i  161 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA-----HMP--NASCGVPTL  161 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSS-----CCC--CTTCCCCEE
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHh-----cCC--cccCCCCce
Confidence            888888877777665 999999999999999999999998744322 2 568999887332     222  2467 5666


Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe-EEEE
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG-RFYC  336 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G-~Y~C  336 (600)
                      ...+....+.+|+.++|.|.+.|.|.+.+.|++++..+....           ........+.|.|.+++..|.| .|+|
T Consensus       162 ~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~-----------~~~~~~~~~~L~i~~v~~~D~G~~Y~C  230 (347)
T 2ifg_A          162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV-----------MKSGGLPSLGLTLANVTSDLNRKNVTC  230 (347)
T ss_dssp             EEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEE-----------CCCCCSSEEEEEEESCCSTTTTCCEEE
T ss_pred             eccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccc-----------ccceecccceEEEeeCChHHCCCeEEE
Confidence            666778889999999999999999999999999876433211           0011123468999999999999 9999


Q ss_pred             EEecCCCceeEEEEEEEEE
Q psy1672         337 VAENRAGIADANFTLQVTY  355 (600)
Q Consensus       337 ~a~N~~G~~~~~v~L~V~~  355 (600)
                      .|.|..|..+..+.+.|..
T Consensus       231 ~a~n~~g~~~~~~~l~V~~  249 (347)
T 2ifg_A          231 WAENDVGRAEVSVQVNVSF  249 (347)
T ss_dssp             CCEETTEECCEEECCCCBE
T ss_pred             EEEcCCCCEEEEEEEEEcC
Confidence            9999999888877777644

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=6.9e-25  Score=220.74  Aligned_cols=200  Identities=32%  Similarity=0.589  Sum_probs=147.0

Q ss_pred             CCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCC
Q psy1672          19 STCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL   98 (600)
Q Consensus        19 ~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l   98 (600)
                      ..|.|..  ....++|.+.+++.+|..++.. ++.|+|++|.|+.++...|.  ++.+|++|+|++|.++.+++..|.++
T Consensus        10 ~~C~c~~--~~~~l~~~~~~l~~ip~~~~~~-l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~~~l   84 (270)
T 2o6q_A           10 GVCSCNN--NKNSVDCSSKKLTAIPSNIPAD-TKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKEL   84 (270)
T ss_dssp             CSBEEET--TTTEEECTTSCCSSCCSCCCTT-CSEEECCSSCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred             CCCEeCC--CCCEEEccCCCCCccCCCCCCC-CCEEECcCCCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhhcCC
Confidence            5688863  2468999999999999877765 88888888888887776665  66677777777776666666555556


Q ss_pred             CCccEEEccCCCCCCCCccc------------------------cCCCCCCCEEEccCCCCCccCcccccCCCCcceeeC
Q psy1672          99 TNLIEIDLSDNLLTSIPSLT------------------------FQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM  154 (600)
Q Consensus        99 ~~L~~L~Ls~N~l~~l~~~~------------------------f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~L  154 (600)
                      ++|++|+|++|.|+.++...                        |..+++|++|+|++|.++.++...|..+++|+.|+|
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  164 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL  164 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence            66666666665555555444                        444555555555555555555555666677777777


Q ss_pred             CCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCccccc-cccchhhhccc
Q psy1672         155 SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCN-MRSIKMWLADK  223 (600)
Q Consensus       155 s~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~-l~~l~~w~~~~  223 (600)
                      ++|.+..+.+..|..+++|+.|+|++|.++.++...|..+++|+.|++.+|+|.|+|. +.++..|+...
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~  234 (270)
T 2o6q_A          165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKK  234 (270)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHHHH
T ss_pred             cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHHHHHHHHhh
Confidence            7777777776677778888888888888888887778888999999999999999998 67888887743

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=2.3e-25  Score=228.04  Aligned_cols=223  Identities=24%  Similarity=0.414  Sum_probs=159.2

Q ss_pred             CCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCccc------
Q psy1672          17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI------   90 (600)
Q Consensus        17 Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i------   90 (600)
                      ||..|.|.|.    .++|.+.+++.+|..++.. +++|+|++|.++.++...|.  .+++|+.|+|++|.++.+      
T Consensus         1 CP~~C~C~~~----~l~c~~~~l~~ip~~~~~~-l~~L~L~~n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~   73 (306)
T 2z66_A            1 CPSRCSCSGT----EIRCNSKGLTSVPTGIPSS-ATRLELESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQS   73 (306)
T ss_dssp             CCTTCEEETT----EEECCSSCCSSCCSCCCTT-CCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCEEEEEEHH
T ss_pred             CcCCCeeCCC----EEEcCCCCcccCCCCCCCC-CCEEECCCCccCccCHhHhh--ccccCCEEECCCCccCcccCcccc
Confidence            9999999974    5999999999999988766 99999999999988887765  667777777766655422      


Q ss_pred             -------------------------------------------Cc-cccCCCCCccEEEccCCCCCCCCccccC------
Q psy1672          91 -------------------------------------------DS-GALDGLTNLIEIDLSDNLLTSIPSLTFQ------  120 (600)
Q Consensus        91 -------------------------------------------~~-~~f~~l~~L~~L~Ls~N~l~~l~~~~f~------  120 (600)
                                                                 .. ..|..+++|++|+|++|.++.+.+..|.      
T Consensus        74 ~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  153 (306)
T 2z66_A           74 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE  153 (306)
T ss_dssp             HHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred             cccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence                                                       11 2344445555555555554433333333      


Q ss_pred             -------------------CCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCC
Q psy1672         121 -------------------SVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGN  181 (600)
Q Consensus       121 -------------------~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N  181 (600)
                                         .+++|++|+|++|.++.+.+..|..+++|+.|+|++|.+..+.+..+..+++|+.|+|++|
T Consensus       154 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             EEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence                               3445555555555555555555566666666666666666666666667777777777777


Q ss_pred             cCCCCCcccccccc-cccEEEccCCcCccccccccchhhhcccCCCC---CCCCCCCCccccccccccc
Q psy1672         182 RLSHFPVRSVEPLL-KLMMIELHDNPWVCDCNMRSIKMWLADKKNVP---VQPACTGPERLSGKVFSDL  246 (600)
Q Consensus       182 ~l~~l~~~~~~~l~-~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~~~---~~~~C~~p~~l~g~~l~~l  246 (600)
                      .+....+..+..++ +|+.|++.+|+|.|+|.+.|+..|+.......   ....|..|..+.|..+..+
T Consensus       234 ~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~~  302 (306)
T 2z66_A          234 HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSL  302 (306)
T ss_dssp             CCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGGC
T ss_pred             CCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeeee
Confidence            77777666777774 89999999999999999999999988544332   4578999999999887765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=1.3e-24  Score=221.22  Aligned_cols=200  Identities=25%  Similarity=0.400  Sum_probs=157.6

Q ss_pred             CCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCc-------
Q psy1672          20 TCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS-------   92 (600)
Q Consensus        20 ~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~-------   92 (600)
                      .|.|......+.++|.+++++.+|..++.. +++|+|++|.|+.++...|.  .+.+|+.|+|++|.|+.++.       
T Consensus         3 ~C~~~~l~~l~~l~~~~~~l~~ip~~~~~~-l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~l~~L   79 (290)
T 1p9a_G            3 ICEVSKVASHLEVNCDKRNLTALPPDLPKD-TTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVDGTLPVL   79 (290)
T ss_dssp             SSEEECSTTCCEEECTTSCCSSCCSCCCTT-CCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECCSCCTTC
T ss_pred             cccccccCCccEEECCCCCCCcCCCCCCCC-CCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCCCCCCcC
Confidence            577765555688999999999999988765 99999999999988776665  56666666666555544322       


Q ss_pred             --------------cccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCc
Q psy1672          93 --------------GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR  158 (600)
Q Consensus        93 --------------~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~  158 (600)
                                    ..+..+++|++|+|++|+|+.+++..|..+++|++|+|++|.++.+++..|..+++|+.|+|++|+
T Consensus        80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             CEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence                          235667777777777777777777777778888888888888888777777788888888888888


Q ss_pred             CcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCccccccccchhhhccc
Q psy1672         159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADK  223 (600)
Q Consensus       159 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~  223 (600)
                      |+.+++..|..+++|+.|+|++|+|+.++... ..+..|+.+++.+|||.|+|.+.|+..|+.+.
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~-~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~  223 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDN  223 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCCccChhh-cccccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence            88887777778888888888888888887544 44568899999999999999999999998854

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.92  E-value=2e-24  Score=206.32  Aligned_cols=184  Identities=23%  Similarity=0.477  Sum_probs=122.2

Q ss_pred             CCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccc
Q psy1672          15 SSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGA   94 (600)
Q Consensus        15 ~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~   94 (600)
                      ..||..|.|.+    ..++|.+.+++.+|..++.. +++|+|++|.|+.++. .|.  ++.+|+.|+|++|.|+.+.+.+
T Consensus         2 ~~CP~~C~C~~----~~l~~~~~~l~~ip~~~~~~-l~~L~L~~n~i~~ip~-~~~--~l~~L~~L~Ls~N~i~~i~~~~   73 (193)
T 2wfh_A            2 SRCPTECTCLD----TVVRCSNKGLKVLPKGIPRD-VTELYLDGNQFTLVPK-ELS--NYKHLTLIDLSNNRISTLSNQS   73 (193)
T ss_dssp             --CCTTCEEET----TEEECTTSCCSSCCSCCCTT-CCEEECCSSCCCSCCG-GGG--GCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCCCCCEeCC----CEEEcCCCCCCcCCCCCCCC-CCEEECCCCcCchhHH-Hhh--cccCCCEEECCCCcCCEeCHhH
Confidence            37999999984    57999999999999877655 7888888887777763 333  4555555555555555554444


Q ss_pred             cCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCC
Q psy1672          95 LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLE  174 (600)
Q Consensus        95 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~  174 (600)
                      |.++                        ++|++|+|++|.|+.+.+..|..+++|+.|+|++|.|+.+            
T Consensus        74 f~~l------------------------~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~------------  117 (193)
T 2wfh_A           74 FSNM------------------------TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV------------  117 (193)
T ss_dssp             TTTC------------------------TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBC------------
T ss_pred             ccCC------------------------CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCee------------
Confidence            4444                        4455555555555444433344334444444333333333            


Q ss_pred             EEEcCCCcCCCCCcccccccccccEEEccCCcCccccccccchhhhcccCCCCCCCCCCCCccccccccccccccccCcc
Q psy1672         175 SIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACK  254 (600)
Q Consensus       175 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~~~C~  254 (600)
                                  +...|..+++|+.|++.+|+|.|+|.+.|+..|+...........|..|..+.|+.+.++..+.+.|.
T Consensus       118 ------------~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~~~  185 (193)
T 2wfh_A          118 ------------PEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCA  185 (193)
T ss_dssp             ------------CTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGGTTCBTTTSCGGGCCC-
T ss_pred             ------------ChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHHCCCCcccCChHHeeeh
Confidence                        22334445677788899999999999999999998554434567899999999999999888877664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.90  E-value=1.3e-23  Score=200.44  Aligned_cols=186  Identities=27%  Similarity=0.490  Sum_probs=125.0

Q ss_pred             CCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChh-hhcccCCCCccEEEeecccCcccCccc
Q psy1672          16 SCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKE-AFRRAGLLNLQKLFLARCHIGQIDSGA   94 (600)
Q Consensus        16 ~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~-~f~~~~l~~L~~L~L~~n~l~~i~~~~   94 (600)
                      +||..|.|.|    +.++|.+++++.+|..++.. +++|+|++|.|+.++.. .|.  .+.+|+.|              
T Consensus         1 ~CP~~C~C~~----~~l~~s~~~l~~ip~~~~~~-l~~L~l~~n~i~~~~~~~~~~--~l~~L~~L--------------   59 (192)
T 1w8a_A            1 DCPAMCHCEG----TTVDCTGRGLKEIPRDIPLH-TTELLLNDNELGRISSDGLFG--RLPHLVKL--------------   59 (192)
T ss_dssp             CCCTTSEEET----TEEECTTSCCSSCCSCCCTT-CSEEECCSCCCCSBCCSCSGG--GCTTCCEE--------------
T ss_pred             CcCCCCEECC----CEEEcCCCCcCcCccCCCCC-CCEEECCCCcCCccCCccccc--cCCCCCEE--------------
Confidence            5999999996    56999999999999877664 77777777777766643 233  44445444              


Q ss_pred             cCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCC
Q psy1672          95 LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLE  174 (600)
Q Consensus        95 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~  174 (600)
                                +|++|.|+.+.+..|..+++|++|+|++|.|+.+.+..|..+++|+.|+|++|+|+.+            
T Consensus        60 ----------~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------  117 (192)
T 1w8a_A           60 ----------ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV------------  117 (192)
T ss_dssp             ----------ECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE------------
T ss_pred             ----------ECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee------------
Confidence                      5555544444444444444555555555544444443344444444444444444333            


Q ss_pred             EEEcCCCcCCCCCcccccccccccEEEccCCcCccccccccchhhhcccCCCCCCCCCCCCccccccccccccccccCcc
Q psy1672         175 SIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACK  254 (600)
Q Consensus       175 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~~~C~  254 (600)
                                  .+..|..+++|+.|++.+|+|.|+|.+.|+..|+...........|..|..++|+.+.++...+|.|.
T Consensus       118 ------------~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~~~~~C~  185 (192)
T 1w8a_A          118 ------------MPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             ------------CTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCCCC
T ss_pred             ------------CHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHHcCCChhhCcHhhcCcC
Confidence                        23334455677788889999999999999999988553333567899999999999999999999997


Q ss_pred             cc
Q psy1672         255 PE  256 (600)
Q Consensus       255 p~  256 (600)
                      ..
T Consensus       186 ~~  187 (192)
T 1w8a_A          186 SE  187 (192)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=1.6e-23  Score=218.94  Aligned_cols=219  Identities=26%  Similarity=0.431  Sum_probs=155.4

Q ss_pred             hcCCCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccC
Q psy1672          12 VSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQID   91 (600)
Q Consensus        12 ~~~~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~   91 (600)
                      .....|+..|.|.|.+   ..+|.+.+++.+|..++.. +++|++++|.++.++...|.  ++++|+.|+|++|.++.+.
T Consensus        19 ~~~~~~~~~~~C~~~~---~c~~~~~~l~~iP~~~~~~-L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~   92 (353)
T 2z80_A           19 KEESSNQASLSCDRNG---ICKGSSGSLNSIPSGLTEA-VKSLDLSNNRITYISNSDLQ--RCVNLQALVLTSNGINTIE   92 (353)
T ss_dssp             --------CCEECTTS---EEECCSTTCSSCCTTCCTT-CCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCEEC
T ss_pred             CccCCCccCCCCCCCe---EeeCCCCCccccccccccc-CcEEECCCCcCcccCHHHhc--cCCCCCEEECCCCccCccC
Confidence            3455799999999864   4889999999999987765 99999999999888877665  7888888888888888777


Q ss_pred             ccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCc-ccccCCCCcceeeCCC--------------
Q psy1672          92 SGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEK-GAFQFVPGLVKLDMSE--------------  156 (600)
Q Consensus        92 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~-~~~~~l~~L~~L~Ls~--------------  156 (600)
                      +.+|.++++|++|+|++|.|+.++...|..+++|++|+|++|.++.++. ..|..+++|+.|++++              
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  172 (353)
T 2z80_A           93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG  172 (353)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence            7777777777777777777777776666667777777777776665544 3344444444444433              


Q ss_pred             -----------CcCcccChh------------------------------------------------------------
Q psy1672         157 -----------SRLEHISPE------------------------------------------------------------  165 (600)
Q Consensus       157 -----------n~l~~i~~~------------------------------------------------------------  165 (600)
                                 |.+..+.+.                                                            
T Consensus       173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~  252 (353)
T 2z80_A          173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK  252 (353)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred             CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhh
Confidence                       333322111                                                            


Q ss_pred             -------------------hhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCccccc-cccchhhhcccCC
Q psy1672         166 -------------------AFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCN-MRSIKMWLADKKN  225 (600)
Q Consensus       166 -------------------~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~-l~~l~~w~~~~~~  225 (600)
                                         .+..+++|+.|+|++|+++.++...|..+++|+.|++.+|+|.|+|. +.++..|+.....
T Consensus       253 ~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~  332 (353)
T 2z80_A          253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ  332 (353)
T ss_dssp             EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTT
T ss_pred             ccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccc
Confidence                               12345678888888888888887777889999999999999999996 8899999885433


Q ss_pred             C-CCCCCCCCCc
Q psy1672         226 V-PVQPACTGPE  236 (600)
Q Consensus       226 ~-~~~~~C~~p~  236 (600)
                      . .....|..|.
T Consensus       333 ~~~~~~~C~~p~  344 (353)
T 2z80_A          333 KEQGSAKCSGSG  344 (353)
T ss_dssp             TEESCCBBTTTC
T ss_pred             cCCCCcccCCCC
Confidence            2 2456788763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=6e-23  Score=206.99  Aligned_cols=213  Identities=26%  Similarity=0.440  Sum_probs=148.6

Q ss_pred             CCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCC
Q psy1672          19 STCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL   98 (600)
Q Consensus        19 ~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l   98 (600)
                      .+|.|...  ...++|.+.++..+|..++.. +++|+|++|.++.++...|.  .+++|+.|+|++|.++.+.+.+|.++
T Consensus         1 ~~C~~~~~--~~~~~c~~~~l~~ip~~l~~~-l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l   75 (276)
T 2z62_A            1 EPCVEVVP--NITYQCMELNFYKIPDNLPFS-TKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSL   75 (276)
T ss_dssp             CCSEEEET--TTEEECTTSCCSSCCSSSCTT-CCEEECTTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTC
T ss_pred             CCceeccC--CceEEecCCCccccCCCCCCC-ccEEECCCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCC
Confidence            36888754  357999999999999988766 99999999999988877665  78888888888888888877778888


Q ss_pred             CCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccC-hhhhcCCC------
Q psy1672          99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS-PEAFTGAK------  171 (600)
Q Consensus        99 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~~~~l~------  171 (600)
                      ++|++|+|++|.++.++...|..+++|++|++++|.+..+....|..+++|+.|++++|.+..+. +..+..++      
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~  155 (276)
T 2z62_A           76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  155 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             cCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence            88888888888877776655666666666666555555544434444444444444444444322 22333333      


Q ss_pred             ---------------------------------------------CCCEEEcCCCcCCCCCcccccccccccEEEccCCc
Q psy1672         172 ---------------------------------------------SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP  206 (600)
Q Consensus       172 ---------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~  206 (600)
                                                                   +|+.|+|++|.++.++...|..+++|+.|++.+|+
T Consensus       156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             CCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence                                                         45555666666666666667778899999999999


Q ss_pred             Cccccc-cccchhhhcccCCCC-CCCCCCCCc
Q psy1672         207 WVCDCN-MRSIKMWLADKKNVP-VQPACTGPE  236 (600)
Q Consensus       207 ~~C~C~-l~~l~~w~~~~~~~~-~~~~C~~p~  236 (600)
                      |.|+|. +.|+..|+....... ....|..+.
T Consensus       236 ~~c~c~~l~~l~~~~~~~~~~~~~~~~C~~~~  267 (276)
T 2z62_A          236 WDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG  267 (276)
T ss_dssp             BCCCTTTTHHHHHHHHHTGGGBCSCCBBTTTC
T ss_pred             ccccCCchHHHHHHHHhcccccCCCceeeCCC
Confidence            999995 788889987432221 345676553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.90  E-value=1.1e-22  Score=199.59  Aligned_cols=177  Identities=30%  Similarity=0.624  Sum_probs=126.5

Q ss_pred             CCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccc
Q psy1672          15 SSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGA   94 (600)
Q Consensus        15 ~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~   94 (600)
                      ...-..|.|.|.    .++|.+.+++.+|..++.. +++|+|++|.|+.++...|.  .+.+|+.|+|++|+|+.+++..
T Consensus        11 ~~~~~~~~Cs~~----~v~c~~~~l~~ip~~~~~~-L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~   83 (229)
T 3e6j_A           11 AACPSQCSCSGT----TVDCRSKRHASVPAGIPTN-AQILYLHDNQITKLEPGVFD--SLINLKELYLGSNQLGALPVGV   83 (229)
T ss_dssp             CCCCTTCEEETT----EEECTTSCCSSCCSCCCTT-CSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccCCCCCEEeCC----EeEccCCCcCccCCCCCCC-CCEEEcCCCccCccCHHHhh--CccCCcEEECCCCCCCCcChhh
Confidence            345678999974    4999999999999877755 78888888887777666654  5666666666666666666555


Q ss_pred             cCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCC
Q psy1672          95 LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLE  174 (600)
Q Consensus        95 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~  174 (600)
                      |.++++|++|+|++|.|+.+++..|..+++|++|+|++|.|+                        .+ +..+..+++|+
T Consensus        84 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~------------------------~l-p~~~~~l~~L~  138 (229)
T 3e6j_A           84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT------------------------EL-PRGIERLTHLT  138 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------SC-CTTGGGCTTCS
T ss_pred             cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc------------------------cc-CcccccCCCCC
Confidence            666666666666666666555555555555555555555544                        44 23345667777


Q ss_pred             EEEcCCCcCCCCCcccccccccccEEEccCCcCccccc-cccchhhhccc
Q psy1672         175 SIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCN-MRSIKMWLADK  223 (600)
Q Consensus       175 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~-l~~l~~w~~~~  223 (600)
                      .|+|++|+|..++...|..+++|+.|++.+|+|.|+|. +.++..|+...
T Consensus       139 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~  188 (229)
T 3e6j_A          139 HLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADH  188 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHC
T ss_pred             EEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhC
Confidence            77777777777777777888899999999999999996 88889998743

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.8e-22  Score=194.69  Aligned_cols=174  Identities=32%  Similarity=0.620  Sum_probs=121.8

Q ss_pred             CCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccC
Q psy1672          17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD   96 (600)
Q Consensus        17 Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~   96 (600)
                      ||..|.|.|.    .++|.+.+++.+|..++.. +++|+|++|.++.++...|.  .+.+|+.|+|++|+++.+++..|.
T Consensus         1 Cp~~C~C~~~----~v~c~~~~l~~~p~~~~~~-l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~   73 (208)
T 2o6s_A            1 CPSRCSCSGT----TVECYSQGRTSVPTGIPAQ-TTYLDLETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNGVFN   73 (208)
T ss_dssp             CCTTCEEETT----EEECCSSCCSSCCSCCCTT-CSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             CcCCCEECCC----EEEecCCCccCCCCCCCCC-CcEEEcCCCccCcCChhhhc--ccccCcEEECCCCccCccChhhcC
Confidence            9999999974    5999999999999877665 88888888888887777665  677777777777777776666666


Q ss_pred             CCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEE
Q psy1672          97 GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESI  176 (600)
Q Consensus        97 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L  176 (600)
                      .+++|++|+|++|.|+.++...|..+++|++|+|++|.++.+.+.                        .|..+++|+.|
T Consensus        74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------------------~~~~l~~L~~L  129 (208)
T 2o6s_A           74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG------------------------VFDKLTQLKDL  129 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT------------------------TTTTCTTCCEE
T ss_pred             CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHh------------------------HhccCCcCCEE
Confidence            666777777766666666655555566666666666655555444                        44445555555


Q ss_pred             EcCCCcCCCCCcccccccccccEEEccCCcCccccc-cccchhhhc
Q psy1672         177 KLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCN-MRSIKMWLA  221 (600)
Q Consensus       177 ~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~-l~~l~~w~~  221 (600)
                      +|++|.++.++...+..+++|+.|++.+|+|.|+|. ++++..|..
T Consensus       130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n  175 (208)
T 2o6s_A          130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN  175 (208)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHH
T ss_pred             ECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHH
Confidence            555555555555555666677777777778888875 566666655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=3e-22  Score=197.51  Aligned_cols=184  Identities=20%  Similarity=0.348  Sum_probs=165.4

Q ss_pred             CCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeeccc-CcccCcc
Q psy1672          15 SSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCH-IGQIDSG   93 (600)
Q Consensus        15 ~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~-l~~i~~~   93 (600)
                      +.||..|.|... ....|+|.+  ++.+|. ++.. +++|+|++|+|+.++...|.  ++++|+.|+|++|. ++.+++.
T Consensus         2 ~~cp~~C~C~~~-~~~~v~c~~--l~~ip~-~~~~-l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~   74 (239)
T 2xwt_C            2 GCSSPPCECHQE-EDFRVTCKD--IQRIPS-LPPS-TQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESH   74 (239)
T ss_dssp             -CCSSSCSEEEC-STTEEEECS--CSSCCC-CCTT-CCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTT
T ss_pred             CCCCCCCeeCCC-CcceeEccC--ccccCC-CCCc-ccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHh
Confidence            579999999851 246788976  999999 6665 99999999999999998887  89999999999997 9999998


Q ss_pred             ccCCCCCccEEEccC-CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcc---eeeCCCC-cCcccChhhhc
Q psy1672          94 ALDGLTNLIEIDLSD-NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLV---KLDMSES-RLEHISPEAFT  168 (600)
Q Consensus        94 ~f~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~---~L~Ls~n-~l~~i~~~~~~  168 (600)
                      +|.++++|++|+|++ |.|+.+++..|..+++|++|+|++|.++.++.  |..+++|+   .|++++| .+..+++..|.
T Consensus        75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~  152 (239)
T 2xwt_C           75 SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQ  152 (239)
T ss_dssp             TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTT
T ss_pred             HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCccccc
Confidence            999999999999998 99999998899999999999999999999764  78888888   9999999 99999988999


Q ss_pred             CCCCCC-EEEcCCCcCCCCCcccccccccccEEEccCCc-Cc
Q psy1672         169 GAKSLE-SIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP-WV  208 (600)
Q Consensus       169 ~l~~L~-~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~-~~  208 (600)
                      ++++|+ .|++++|.++.++...|.. .+|+.|++.+|+ +.
T Consensus       153 ~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~  193 (239)
T 2xwt_C          153 GLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLT  193 (239)
T ss_dssp             TTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCC
T ss_pred             chhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcc
Confidence            999999 9999999999998877776 799999999995 43

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=9.5e-22  Score=220.53  Aligned_cols=188  Identities=23%  Similarity=0.350  Sum_probs=166.9

Q ss_pred             CCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCcccc
Q psy1672          16 SCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGAL   95 (600)
Q Consensus        16 ~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f   95 (600)
                      .|..+|.|...  ..+++|.+++|++||..++.. +++|+|++|+|+.|++..|.  ++++|++|+|++|+|+.|++++|
T Consensus        22 ~~~~~c~~~~~--~~~~~c~~~~l~~vP~~lp~~-~~~LdLs~N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f   96 (635)
T 4g8a_A           22 ESWEPCVEVVP--NITYQCMELNFYKIPDNLPFS-TKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAY   96 (635)
T ss_dssp             ---CCSEEEET--TTEEECTTSCCSSCCSSSCTT-CCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTT
T ss_pred             CCCCCccccCC--CCEEECCCCCcCccCCCCCcC-CCEEEeeCCCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHh
Confidence            34456777643  468999999999999999877 99999999999999999997  89999999999999999999999


Q ss_pred             CCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccC-hhhhcCCCCCC
Q psy1672          96 DGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS-PEAFTGAKSLE  174 (600)
Q Consensus        96 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~~~~l~~L~  174 (600)
                      .++++|++|+|++|+|+.+++..|.++++|++|+|++|.++.+++..|.++++|+.|+|++|.++.+. +..+..+++|+
T Consensus        97 ~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  176 (635)
T 4g8a_A           97 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  176 (635)
T ss_dssp             TTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             cCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence            99999999999999999999999999999999999999999999889999999999999999998764 56788899999


Q ss_pred             EEEcCCCcCCCCCccccccccccc----EEEccCCcCc
Q psy1672         175 SIKLNGNRLSHFPVRSVEPLLKLM----MIELHDNPWV  208 (600)
Q Consensus       175 ~L~Ls~N~l~~l~~~~~~~l~~L~----~L~l~~N~~~  208 (600)
                      .|+|++|+++.+....+..+.++.    .+++..|++.
T Consensus       177 ~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          177 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  214 (635)
T ss_dssp             EEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred             hhcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence            999999999999887777665443    5677777654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=1e-21  Score=220.22  Aligned_cols=201  Identities=21%  Similarity=0.360  Sum_probs=174.9

Q ss_pred             CceEEEeeCCCCCC-CChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCC-CCCCccccCCCCCCCE
Q psy1672          50 LTQVLDMSGNNLQI-LPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL-TSIPSLTFQSVRFLRD  127 (600)
Q Consensus        50 ~l~~L~Ls~n~L~~-l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~  127 (600)
                      .++.+++..+.+.. .+...|.  .+.+|+.++++.|.+..+.+..+..++.|++|+|++|.+ ..+.+..|..+++|++
T Consensus       421 ~L~~l~l~~~~~~~~~~~~~~~--~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~  498 (635)
T 4g8a_A          421 QLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  498 (635)
T ss_dssp             TCCEEECTTSEEESTTSSCTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             cccchhhhhccccccccccccc--cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCE
Confidence            37788887777654 3445565  799999999999999999999999999999999999974 4556668999999999


Q ss_pred             EEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCccccccc-ccccEEEccCCc
Q psy1672         128 LNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPL-LKLMMIELHDNP  206 (600)
Q Consensus       128 L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l-~~L~~L~l~~N~  206 (600)
                      |+|++|+++.+.+..|.++++|+.|+|++|+|+.+.+..|.++++|+.|+|++|+|+.+++..+..+ .+|+.|++++||
T Consensus       499 L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             EECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999888887 689999999999


Q ss_pred             CccccccccchhhhcccCCCC---CCCCCCCCccccccccccccccccCccc
Q psy1672         207 WVCDCNMRSIKMWLADKKNVP---VQPACTGPERLSGKVFSDLHADDFACKP  255 (600)
Q Consensus       207 ~~C~C~l~~l~~w~~~~~~~~---~~~~C~~p~~l~g~~l~~l~~~~~~C~p  255 (600)
                      |.|||++.||..|+.+.....   ..+.|+.|..++|+.+.+++   ++|+.
T Consensus       579 ~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~---~~C~~  627 (635)
T 4g8a_A          579 FACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN---ITCQM  627 (635)
T ss_dssp             BCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCC---CCC--
T ss_pred             CcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeec---cCCCC
Confidence            999999999999998544322   46789999999999988773   46754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.86  E-value=2.2e-21  Score=220.33  Aligned_cols=184  Identities=22%  Similarity=0.359  Sum_probs=135.5

Q ss_pred             CCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCcc--------ccCCCCCCCEEEccCCCCCccCccccc
Q psy1672          73 GLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSL--------TFQSVRFLRDLNLARNPISKIEKGAFQ  144 (600)
Q Consensus        73 ~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~--------~f~~l~~L~~L~Ls~N~i~~l~~~~~~  144 (600)
                      .+.+|+.|+|++|+++.+++.+|.++++|++|+|++|.++.++..        .|..+++|+.|+|++|.++.++...|.
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~  557 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK  557 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence            688899999999999999888899999999999999998876332        377889999999999999999888899


Q ss_pred             CCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCccccc-ccccccEEEccCCcCcccccc-ccchhhhcc
Q psy1672         145 FVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVE-PLLKLMMIELHDNPWVCDCNM-RSIKMWLAD  222 (600)
Q Consensus       145 ~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~l~~L~~L~l~~N~~~C~C~l-~~l~~w~~~  222 (600)
                      ++++|+.|+|++|+|+.+++..|..+++|+.|+|++|+|+.++...+. .+++|+.+++.+|||.|+|.. .||..|+..
T Consensus       558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~  637 (680)
T 1ziw_A          558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE  637 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSC
T ss_pred             cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHh
Confidence            999999999999999999998899999999999999999999988777 788999999999999999996 999999874


Q ss_pred             cCC-CC---CCCCCCCCccccccccccccccccCcccc
Q psy1672         223 KKN-VP---VQPACTGPERLSGKVFSDLHADDFACKPE  256 (600)
Q Consensus       223 ~~~-~~---~~~~C~~p~~l~g~~l~~l~~~~~~C~p~  256 (600)
                      ... ++   ..+.|..|..++|+.+.+++...+.|.+.
T Consensus       638 ~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~  675 (680)
T 1ziw_A          638 THTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAH  675 (680)
T ss_dssp             C-------------------------------------
T ss_pred             cCcccccccCCcEECCchHHCCCcccccChhhcCCCcc
Confidence            322 21   35799999999999999998887666543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=8.2e-21  Score=191.14  Aligned_cols=189  Identities=30%  Similarity=0.499  Sum_probs=170.8

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -+.+.+.+..+..++.......+++|+|++|.++.++  .+.  .+++|++|+|++|.++.+.+..|..+++|++|+|++
T Consensus        43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALK--ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhc--CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            3567888888888876544455999999999999875  343  799999999999999999998899999999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      |.++.+++..|..+++|++|+|++|.++.+.+..|..+++|+.|++++|+++.+.+..|..+++|+.|+|++|.+..++.
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            99999999889999999999999999999988889999999999999999999988889999999999999999999998


Q ss_pred             ccccccccccEEEccCCcCccccc-cccchhhhc
Q psy1672         189 RSVEPLLKLMMIELHDNPWVCDCN-MRSIKMWLA  221 (600)
Q Consensus       189 ~~~~~l~~L~~L~l~~N~~~C~C~-l~~l~~w~~  221 (600)
                      ..+..+++|+.|++.+|+|.|+|. ++++..|..
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n  232 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN  232 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             HHHhCCcCCCEEEccCCCccccCcHHHHHHHHHH
Confidence            888999999999999999999996 666766755

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=2.7e-21  Score=216.54  Aligned_cols=217  Identities=21%  Similarity=0.280  Sum_probs=170.0

Q ss_pred             eEEEccCCCCCccCCCCC-CCCceEEEeeCCCCCCCCh-hhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEcc
Q psy1672          30 QWMECRDKFLITIPEAPE-SELTQVLDMSGNNLQILPK-EAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS  107 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~-~~~l~~L~Ls~n~L~~l~~-~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls  107 (600)
                      +.++..+..+..+|..+. ...++.|++++|.+..++. ..|.  .+++|+.|++++|.+..+.+..|.++++|++|+|+
T Consensus       379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  456 (606)
T 3vq2_A          379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA  456 (606)
T ss_dssp             CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred             cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhh--ccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence            345555666666664332 2348889999998887665 5565  78999999999999998888889999999999999


Q ss_pred             CCCCCC-CCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCC
Q psy1672         108 DNLLTS-IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF  186 (600)
Q Consensus       108 ~N~l~~-l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  186 (600)
                      +|.++. +.+..|..+++|+.|+|++|.++.+.+..|..+++|+.|+|++|++..+.+..|..+++|+.|+|++|+++.+
T Consensus       457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  536 (606)
T 3vq2_A          457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS  536 (606)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCE
T ss_pred             CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCccc
Confidence            999986 3455788999999999999999999888899999999999999999999899999999999999999999998


Q ss_pred             Ccccccccc-cccEEEccCCcCccccccccchhhhcccCCCC---CCCCCCCCcccccccccccccc
Q psy1672         187 PVRSVEPLL-KLMMIELHDNPWVCDCNMRSIKMWLADKKNVP---VQPACTGPERLSGKVFSDLHAD  249 (600)
Q Consensus       187 ~~~~~~~l~-~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~~~---~~~~C~~p~~l~g~~l~~l~~~  249 (600)
                      +.. +..++ .|+.+++.+|+|.|+|.+.|+..|+.......   ..+.|..|..+.|+.+.+++..
T Consensus       537 p~~-~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~  602 (606)
T 3vq2_A          537 KGI-LQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNS  602 (606)
T ss_dssp             ESC-GGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSSGGGCCCC----------------
T ss_pred             CHh-HhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccccCCccceeCCChHhCCCEeeecccc
Confidence            865 77776 59999999999999999999999998543322   4678999999999998877655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.82  E-value=3.2e-20  Score=207.78  Aligned_cols=195  Identities=24%  Similarity=0.342  Sum_probs=153.3

Q ss_pred             ceEEEeeCCCCCCCC-hhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCC---CccccCCCCCCC
Q psy1672          51 TQVLDMSGNNLQILP-KEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSI---PSLTFQSVRFLR  126 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~-~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l---~~~~f~~l~~L~  126 (600)
                      ++.|++++|.+..+. ...|.  .+++|+.|++++|.+..+.+..|..+++|++|+|++|.++..   ....|..+++|+
T Consensus       402 L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~  479 (606)
T 3t6q_A          402 LELLDLAFTRLKVKDAQSPFQ--NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE  479 (606)
T ss_dssp             CSEEECTTCCEECCTTCCTTT--TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred             CCeEECCCCcCCCcccchhhh--CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence            666666666665432 23343  567777777777777777666777777788888887777652   223567778888


Q ss_pred             EEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCc
Q psy1672         127 DLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP  206 (600)
Q Consensus       127 ~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~  206 (600)
                      +|+|++|.++.+.+..|..+++|+.|+|++|++..+.+..+..++.| .|+|++|.++.+++..+..+++|+.+++.+|+
T Consensus       480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred             EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence            88888888888877888888899999999999988888888889999 99999999999888888889999999999999


Q ss_pred             CccccccccchhhhcccCCC---CCCCCCCCCccccccccccccc
Q psy1672         207 WVCDCNMRSIKMWLADKKNV---PVQPACTGPERLSGKVFSDLHA  248 (600)
Q Consensus       207 ~~C~C~l~~l~~w~~~~~~~---~~~~~C~~p~~l~g~~l~~l~~  248 (600)
                      |.|+|...|+..|+......   ...+.|..|..++|+.+.+++.
T Consensus       559 ~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~  603 (606)
T 3t6q_A          559 LDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL  603 (606)
T ss_dssp             EECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGGGCCC
T ss_pred             ccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeeeeeec
Confidence            99999999999999853221   1467899999999999887744

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.82  E-value=8.6e-20  Score=196.93  Aligned_cols=184  Identities=20%  Similarity=0.296  Sum_probs=154.7

Q ss_pred             CCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCc-ccCcc
Q psy1672          15 SSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIG-QIDSG   93 (600)
Q Consensus        15 ~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~-~i~~~   93 (600)
                      .+||..|.|..    ..++|.+.+++.+|. ++.. +++|+|++|.|+.+++..|.  ++.+|++|+|++|.+. .+++.
T Consensus         2 ~p~~~~c~~~~----~~~~c~~~~l~~lp~-l~~~-l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~~~~~i~~~   73 (455)
T 3v47_A            2 DPGTSECSVIG----YNAICINRGLHQVPE-LPAH-VNYVDLSLNSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRNN   73 (455)
T ss_dssp             -----CCEEET----TEEECCSSCCSSCCC-CCTT-CCEEECCSSCCCEECTTTTS--SCTTCCEEECCCCSTTCEECTT
T ss_pred             CCccceeEEEc----cccCcCCCCcccCCC-CCCc-cCEEEecCCccCcCChhHhc--cCccccEEECcCCcccceECcc
Confidence            57899999973    569999999999999 5555 99999999999999877776  8999999999999886 77788


Q ss_pred             ccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCc--cCcccccCCCCcceeeCCCCcCcccChhh-hcCC
Q psy1672          94 ALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISK--IEKGAFQFVPGLVKLDMSESRLEHISPEA-FTGA  170 (600)
Q Consensus        94 ~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~--l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~-~~~l  170 (600)
                      +|.++++|++|+|++|.++.+.+..|..+++|++|+|++|.++.  .....|..+++|+.|+|++|.+..+.+.. +.++
T Consensus        74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  153 (455)
T 3v47_A           74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM  153 (455)
T ss_dssp             TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred             cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence            89999999999999999999988889999999999999999987  33345889999999999999999987665 8899


Q ss_pred             CCCCEEEcCCCcCCCCCccccccc--ccccEEEccCCc
Q psy1672         171 KSLESIKLNGNRLSHFPVRSVEPL--LKLMMIELHDNP  206 (600)
Q Consensus       171 ~~L~~L~Ls~N~l~~l~~~~~~~l--~~L~~L~l~~N~  206 (600)
                      ++|+.|+|++|.+..+....+..+  .+|+.+++.+|.
T Consensus       154 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~  191 (455)
T 3v47_A          154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT  191 (455)
T ss_dssp             TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB
T ss_pred             CcccEEeCCCCcccccChhhhhccccccccccccccCc
Confidence            999999999999998877666655  345555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.82  E-value=6e-20  Score=205.62  Aligned_cols=189  Identities=21%  Similarity=0.263  Sum_probs=170.4

Q ss_pred             CCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccc
Q psy1672          15 SSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGA   94 (600)
Q Consensus        15 ~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~   94 (600)
                      ..|+..|.|...  ..+++|.+.+++.+|..++.. +++|+|++|.|+.+++..|.  ++.+|++|+|++|.+..+.+.+
T Consensus         2 ~~~~~~C~~~~~--~~~~~c~~~~l~~iP~~l~~~-l~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~   76 (606)
T 3t6q_A            2 TSSDQKCIEKEV--NKTYNCENLGLNEIPGTLPNS-TECLEFSFNVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDT   76 (606)
T ss_dssp             ----CCCEEEET--TTEEECTTSCCSSCCTTSCTT-CCEEECTTCCCSEECTTTST--TCTTCSEEECTTCCCCEECTTT
T ss_pred             ccccCceecccC--CceEECCCCCcccCcCCCCCc-CcEEEccCCccCcCChhHhc--cCccceEEECCCCccceeChhh
Confidence            368999999754  358999999999999988887 99999999999999888887  8999999999999999999999


Q ss_pred             cCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCC
Q psy1672          95 LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLE  174 (600)
Q Consensus        95 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~  174 (600)
                      |.++++|++|+|++|.++.+.+..|..+++|++|+|++|.++.+.+..|..+++|++|++++|.+..+....+..+++|+
T Consensus        77 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  156 (606)
T 3t6q_A           77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK  156 (606)
T ss_dssp             TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCC
T ss_pred             ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccC
Confidence            99999999999999999999888999999999999999999999888899999999999999999998655666799999


Q ss_pred             EEEcCCCcCCCCCccccccccccc--EEEccCCcCc
Q psy1672         175 SIKLNGNRLSHFPVRSVEPLLKLM--MIELHDNPWV  208 (600)
Q Consensus       175 ~L~Ls~N~l~~l~~~~~~~l~~L~--~L~l~~N~~~  208 (600)
                      .|++++|.+..+....+..+.+|+  .+++.+|.+.
T Consensus       157 ~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             EEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             EEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            999999999999888888889888  8899998765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=2.4e-19  Score=185.29  Aligned_cols=182  Identities=26%  Similarity=0.464  Sum_probs=158.7

Q ss_pred             CCCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCcc
Q psy1672          14 VSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSG   93 (600)
Q Consensus        14 ~~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~   93 (600)
                      ...||..|.|.+    +.++|.+..+..+|..++.. +++|+|++|.|+.++...|.  .+.+|++|+|++|.++.+.+.
T Consensus        22 ~~~cp~~c~c~l----~~l~~~~~~l~~lp~~~~~~-l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~   94 (330)
T 1xku_A           22 GPVCPFRCQCHL----RVVQCSDLGLEKVPKDLPPD-TALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPG   94 (330)
T ss_dssp             CCCCCTTCEEET----TEEECTTSCCCSCCCSCCTT-CCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTT
T ss_pred             cCCCCCCCcCCC----eEEEecCCCccccCccCCCC-CeEEECCCCcCCEeChhhhc--cCCCCCEEECCCCcCCeeCHH
Confidence            357999999986    46999999999999988766 99999999999999988776  899999999999999999888


Q ss_pred             ccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcc--cChhhhcCCC
Q psy1672          94 ALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH--ISPEAFTGAK  171 (600)
Q Consensus        94 ~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~--i~~~~~~~l~  171 (600)
                      +|..+++|++|+|++|.|+.++...+   ++|++|++++|.++.+.+..|..+++|+.|++++|.+..  +.+..+..++
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  171 (330)
T 1xku_A           95 AFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK  171 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred             HhcCCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence            99999999999999999999987554   679999999999999888888999999999999999865  6667788888


Q ss_pred             CCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       172 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      +|+.|++++|.+..++...+   ++|+.|++.+|.+.
T Consensus       172 ~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~  205 (330)
T 1xku_A          172 KLSYIRIADTNITTIPQGLP---PSLTELHLDGNKIT  205 (330)
T ss_dssp             TCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCC
T ss_pred             CcCEEECCCCccccCCcccc---ccCCEEECCCCcCC
Confidence            99999999988888775433   67788888887654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.82  E-value=1.3e-19  Score=187.58  Aligned_cols=181  Identities=28%  Similarity=0.471  Sum_probs=152.8

Q ss_pred             CCCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCcc
Q psy1672          14 VSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSG   93 (600)
Q Consensus        14 ~~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~   93 (600)
                      ...||..|.|.+    ..++|.+.+++.+|..+... ++.|+|++|.+..++...|.  ++.+|+.|+|++|.++.+.+.
T Consensus        24 ~~~cp~~c~c~l----~~l~~~~~~l~~ip~~~~~~-l~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~   96 (332)
T 2ft3_A           24 SAMCPFGCHCHL----RVVQCSDLGLKAVPKEISPD-TTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNKISKIHEK   96 (332)
T ss_dssp             -CCCCSSCEEET----TEEECCSSCCSSCCSCCCTT-CCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECGG
T ss_pred             cCCCCCCCcccC----CEEECCCCCccccCCCCCCC-CeEEECCCCcCCccCHhHhh--CCCCCcEEECCCCccCccCHh
Confidence            457999999986    46999999999999988765 99999999999999887776  899999999999999999999


Q ss_pred             ccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcc--cChhhhcCCC
Q psy1672          94 ALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH--ISPEAFTGAK  171 (600)
Q Consensus        94 ~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~--i~~~~~~~l~  171 (600)
                      +|.++++|++|+|++|.++.++...+   ++|++|++++|.++.+.+..|..+++|+.|++++|.+..  +.+..+..+ 
T Consensus        97 ~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-  172 (332)
T 2ft3_A           97 AFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-  172 (332)
T ss_dssp             GSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-
T ss_pred             HhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-
Confidence            99999999999999999999988654   689999999999999988889999999999999999864  556667666 


Q ss_pred             CCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       172 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      +|+.|++++|.++.++...+   ++|+.|++.+|.+.
T Consensus       173 ~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          173 KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQ  206 (332)
T ss_dssp             CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCC
T ss_pred             ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCC
Confidence            77777777777777664332   45666667666543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.4e-19  Score=189.04  Aligned_cols=185  Identities=19%  Similarity=0.297  Sum_probs=142.3

Q ss_pred             CCCCC-CeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccC-cccCcc
Q psy1672          16 SCPST-CICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHI-GQIDSG   93 (600)
Q Consensus        16 ~Cp~~-C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l-~~i~~~   93 (600)
                      +||.. |.|.+    .+|+|.+++|++||..++.. +++|+|++|+|+.|+..+|.  ++++|++|+|++|.+ +.++..
T Consensus         1 gCp~~~C~C~~----~~v~C~~~~Lt~iP~~l~~~-l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~   73 (350)
T 4ay9_X            1 GCHHRICHCSN----RVFLCQESKVTEIPSDLPRN-AIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEAD   73 (350)
T ss_dssp             -CCCSSSEEET----TEEEEESTTCCSCCTTCCTT-CSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTT
T ss_pred             CCCCCccEeeC----CEEEecCCCCCccCcCcCCC-CCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChh
Confidence            59965 99984    57999999999999988765 99999999999999999997  899999999999997 557888


Q ss_pred             ccCCCCCccE-EEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCC------------------------
Q psy1672          94 ALDGLTNLIE-IDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPG------------------------  148 (600)
Q Consensus        94 ~f~~l~~L~~-L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~------------------------  148 (600)
                      +|.++++|++ +.+..|+|+.+++..|..+++|++|++++|.++.+.+..+....+                        
T Consensus        74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~  153 (350)
T 4ay9_X           74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS  153 (350)
T ss_dssp             SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred             HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence            8999998875 566779999999889999999999999999888766544433333                        


Q ss_pred             --cceeeCCCCcCcccChhhhcCCCCCCEEEcC-CCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         149 --LVKLDMSESRLEHISPEAFTGAKSLESIKLN-GNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       149 --L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                        |+.|+|++|+|+.+++..|. ..+|+.|++. +|.++.++.+.|..+++|+.|++++|.+.
T Consensus       154 ~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          154 FESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             SSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             hhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence              44555666666666554443 3456666664 35666666666666667777777776643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.81  E-value=1.7e-19  Score=201.97  Aligned_cols=185  Identities=25%  Similarity=0.346  Sum_probs=165.8

Q ss_pred             CCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCC
Q psy1672          19 STCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL   98 (600)
Q Consensus        19 ~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l   98 (600)
                      .+|.|...  ..+++|.+.+++.+|..++.. +++|+|++|.++.++...|.  ++.+|++|+|++|.++.+.+.+|.++
T Consensus         5 ~~c~~~~~--~~~~~c~~~~l~~ip~~~~~~-l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~~~~~l   79 (606)
T 3vq2_A            5 NPCIEVVP--NITYQCMDQKLSKVPDDIPSS-TKNIDLSFNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWHGL   79 (606)
T ss_dssp             -CCEEEET--TTEEECTTSCCSSCCTTSCTT-CCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             CCceecCC--CCceEccCCCcccCCCCCCCC-cCEEECCCCCcCEeChhhcc--CCccCcEEeCCCCcccccCHHHhhch
Confidence            34777533  468999999999999988866 99999999999999988887  89999999999999999999999999


Q ss_pred             CCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccC-hhhhcCCCCCCEEE
Q psy1672          99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS-PEAFTGAKSLESIK  177 (600)
Q Consensus        99 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~~~~l~~L~~L~  177 (600)
                      ++|++|+|++|.++.+.+..|..+++|++|+|++|.++.+.+..|..+++|+.|++++|.+..+. +..|.++++|++|+
T Consensus        80 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~  159 (606)
T 3vq2_A           80 HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD  159 (606)
T ss_dssp             TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEE
T ss_pred             hhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEE
Confidence            99999999999999998889999999999999999999998888999999999999999999754 77899999999999


Q ss_pred             cCCCcCCCCCccccccccccc----EEEccCCcCc
Q psy1672         178 LNGNRLSHFPVRSVEPLLKLM----MIELHDNPWV  208 (600)
Q Consensus       178 Ls~N~l~~l~~~~~~~l~~L~----~L~l~~N~~~  208 (600)
                      |++|.+..++...+..+.+|+    .+++.+|.+.
T Consensus       160 Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~  194 (606)
T 3vq2_A          160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID  194 (606)
T ss_dssp             CCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC
T ss_pred             ccCCcceecChhhhhhhhccccccceeeccCCCcc
Confidence            999999998877777766554    7888888754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.81  E-value=1.5e-19  Score=194.94  Aligned_cols=162  Identities=25%  Similarity=0.448  Sum_probs=146.9

Q ss_pred             CCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeC
Q psy1672          75 LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM  154 (600)
Q Consensus        75 ~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~L  154 (600)
                      .+|+.|+|++|.+..+.+..|..+++|++|+|++|.++.+++..|..+++|++|+|++|.++.+.+..|..+++|+.|+|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            68999999999999998888999999999999999999998888999999999999999999998889999999999999


Q ss_pred             CCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCccccc-cccchhhhcccCCCC-CCCCC
Q psy1672         155 SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCN-MRSIKMWLADKKNVP-VQPAC  232 (600)
Q Consensus       155 s~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~-l~~l~~w~~~~~~~~-~~~~C  232 (600)
                      ++|++..+.+..|..+++|+.|+|++|+++.++...+..+++|+.|++.+|+|.|+|. +.|+..|+....... ....|
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~~~~~~c  434 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC  434 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTTTTEESCCBB
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHhCccceeeeeee
Confidence            9999999999999999999999999999999998888999999999999999999997 778889987443322 34567


Q ss_pred             CCCc
Q psy1672         233 TGPE  236 (600)
Q Consensus       233 ~~p~  236 (600)
                      ..+.
T Consensus       435 ~~~~  438 (455)
T 3v47_A          435 SGSG  438 (455)
T ss_dssp             TTTC
T ss_pred             cCCC
Confidence            6543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.81  E-value=2.7e-19  Score=196.60  Aligned_cols=201  Identities=20%  Similarity=0.309  Sum_probs=162.4

Q ss_pred             EEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCc--cccCCCCCccEEEccC
Q psy1672          31 WMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS--GALDGLTNLIEIDLSD  108 (600)
Q Consensus        31 ~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~--~~f~~l~~L~~L~Ls~  108 (600)
                      .++..+..+..++.......+++|++++|.++......+.  .+++|+.|+|++|.++.++.  ..|..+++|++|+|++
T Consensus       306 ~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~  383 (520)
T 2z7x_B          306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ  383 (520)
T ss_dssp             EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC--CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred             EEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhc--cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC
Confidence            3444455555444212223499999999999975445554  79999999999999987543  5689999999999999


Q ss_pred             CCCCC-CCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCC
Q psy1672         109 NLLTS-IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP  187 (600)
Q Consensus       109 N~l~~-l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~  187 (600)
                      |.++. ++...|..+++|++|+|++|.++...+..+.  ++|+.|+|++|+|+.++...+ .+++|+.|+|++|+++.++
T Consensus       384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~  460 (520)
T 2z7x_B          384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVP  460 (520)
T ss_dssp             SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCC
T ss_pred             CcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccC
Confidence            99998 8877788899999999999999765443332  689999999999998865544 8999999999999999999


Q ss_pred             cccccccccccEEEccCCcCccccccccc-hhhhcccCCCC-CCCCCCCCc
Q psy1672         188 VRSVEPLLKLMMIELHDNPWVCDCNMRSI-KMWLADKKNVP-VQPACTGPE  236 (600)
Q Consensus       188 ~~~~~~l~~L~~L~l~~N~~~C~C~l~~l-~~w~~~~~~~~-~~~~C~~p~  236 (600)
                      ...+..+++|+.|++.+|+|.|+|.+.|+ ..|+.+..... ....|..|.
T Consensus       461 ~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p~  511 (520)
T 2z7x_B          461 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG  511 (520)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTTC
T ss_pred             HHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhccccCCCCCCcCCcc
Confidence            87788999999999999999999999999 89987543322 567888874

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=5.4e-19  Score=196.09  Aligned_cols=184  Identities=24%  Similarity=0.375  Sum_probs=168.5

Q ss_pred             CCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCC
Q psy1672          20 TCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLT   99 (600)
Q Consensus        20 ~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~   99 (600)
                      .|.|...  ...++|.+.+++++|..++.. +++|+|++|.++.++...|.  ++++|++|+|++|.++.+.+.+|.+++
T Consensus         2 ~c~~~~~--~~~~~c~~~~l~~ip~~l~~~-l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~~l~   76 (570)
T 2z63_A            2 PCVEVVP--NITYQCMELNFYKIPDNLPFS-TKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLS   76 (570)
T ss_dssp             CSEEEET--TTEEECCSSCCSSCCSSSCSS-CCEEECCSCCCCEECTTTTT--TCSSCCEEECTTCCCCEECTTTTTTCT
T ss_pred             CccccCC--CcEEEeCCCCccccCCCcccc-ccEEEccCCccCccChhHhh--CCCCceEEECCCCcCCccCcccccCch
Confidence            5777643  467999999999999988776 99999999999999988887  899999999999999999999999999


Q ss_pred             CccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccC-hhhhcCCCCCCEEEc
Q psy1672         100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS-PEAFTGAKSLESIKL  178 (600)
Q Consensus       100 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~~~~l~~L~~L~L  178 (600)
                      +|++|+|++|.++.+++..|..+++|++|++++|.++.+....|..+++|++|++++|.+..+. +..|.++++|+.|++
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l  156 (570)
T 2z63_A           77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  156 (570)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             hCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeC
Confidence            9999999999999999889999999999999999999998878999999999999999999864 788999999999999


Q ss_pred             CCCcCCCCCcccccccccc----cEEEccCCcCc
Q psy1672         179 NGNRLSHFPVRSVEPLLKL----MMIELHDNPWV  208 (600)
Q Consensus       179 s~N~l~~l~~~~~~~l~~L----~~L~l~~N~~~  208 (600)
                      ++|.+..++...+..+.+|    ..+++.+|.+.
T Consensus       157 ~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~  190 (570)
T 2z63_A          157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  190 (570)
T ss_dssp             TTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred             cCCccceecHHHccchhccchhhhhcccCCCCce
Confidence            9999999988888888888    78999998764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.79  E-value=1.3e-18  Score=193.21  Aligned_cols=186  Identities=23%  Similarity=0.308  Sum_probs=154.5

Q ss_pred             EEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCc--cccCCCCCccEEEccC
Q psy1672          31 WMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS--GALDGLTNLIEIDLSD  108 (600)
Q Consensus        31 ~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~--~~f~~l~~L~~L~Ls~  108 (600)
                      .++..+..+..++.......+++|++++|.++......|.  .+++|+.|+|++|.++.++.  ..|..+++|++|+|++
T Consensus       335 ~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC--SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred             EEEccCCCcccccCccCCCCceEEECCCCccccchhhhhc--ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence            3444455554444212223499999999999985555555  79999999999999998764  5689999999999999


Q ss_pred             CCCCC-CCccccCCCCCCCEEEccCCCCCccCcccccCC-CCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCC
Q psy1672         109 NLLTS-IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV-PGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF  186 (600)
Q Consensus       109 N~l~~-l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l-~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  186 (600)
                      |.++. ++...|..+++|++|+|++|.++...+   ..+ ++|+.|+|++|+|+.++...+ .+++|+.|+|++|+|+.+
T Consensus       413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l  488 (562)
T 3a79_B          413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---RCLPPKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSV  488 (562)
T ss_dssp             SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG---SSCCTTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCC
T ss_pred             CcCCCccChhhhcCcccCCEEECCCCCCCcchh---hhhcCcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCC
Confidence            99998 888889999999999999999875433   334 699999999999999976665 899999999999999999


Q ss_pred             CcccccccccccEEEccCCcCccccccccchh-hhcc
Q psy1672         187 PVRSVEPLLKLMMIELHDNPWVCDCNMRSIKM-WLAD  222 (600)
Q Consensus       187 ~~~~~~~l~~L~~L~l~~N~~~C~C~l~~l~~-w~~~  222 (600)
                      +...+..+++|+.+++++|+|.|+|.+.|+.. |...
T Consensus       489 ~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~  525 (562)
T 3a79_B          489 PDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK  525 (562)
T ss_dssp             CTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHH
T ss_pred             CHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHh
Confidence            98778899999999999999999999999955 8763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.79  E-value=1e-18  Score=163.93  Aligned_cols=138  Identities=30%  Similarity=0.522  Sum_probs=102.2

Q ss_pred             CCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccC
Q psy1672          17 CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD   96 (600)
Q Consensus        17 Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~   96 (600)
                      ||..|.|.|    ..++|.+.+++.+|..++.. ++.|+|++|.++.++...|.  .+.+|+.|+|++|.++.+++..|.
T Consensus         1 Cp~~C~C~~----~~l~~~~~~l~~~p~~~~~~-l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~   73 (177)
T 2o6r_A            1 CPSRCSCSG----TEIRCNSKGLTSVPTGIPSS-ATRLELESNKLQSLPHGVFD--KLTQLTKLSLSQNQIQSLPDGVFD   73 (177)
T ss_dssp             CCTTCEEET----TEEECCSSCCSSCCTTCCTT-CSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             CcCCCEeCC----CEEEecCCCCccCCCCCCCC-CcEEEeCCCcccEeCHHHhc--CcccccEEECCCCcceEeChhHcc
Confidence            999999987    45999999999999877655 88888888888888777665  677777777777777777776677


Q ss_pred             CCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcc
Q psy1672          97 GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH  161 (600)
Q Consensus        97 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~  161 (600)
                      .+++|++|+|++|.|+.+++..|..+++|++|+|++|.++.+++..|..+++|+.|+|++|.+.+
T Consensus        74 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            77777777777777777776666666677777777776666655555555555555555555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.79  E-value=9.1e-19  Score=198.78  Aligned_cols=182  Identities=23%  Similarity=0.343  Sum_probs=164.8

Q ss_pred             CCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCC
Q psy1672          20 TCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLT   99 (600)
Q Consensus        20 ~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~   99 (600)
                      .|.|.+    ..++|.+.+++++|..++.. +++|+|++|.++.++...|.  ++.+|++|+|++|.++.+.+.+|.+++
T Consensus         1 ~C~~~~----~~~~cs~~~L~~ip~~~~~~-l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~   73 (680)
T 1ziw_A            1 KCTVSH----EVADCSHLKLTQVPDDLPTN-ITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQKLP   73 (680)
T ss_dssp             ---CBS----SEEECCSSCCSSCCSCSCTT-CSEEECCSSCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCTTHHHHCT
T ss_pred             CceeEC----CeeECCCCCccccccccCCC-CcEEECCCCCCCCcCHHHHh--CCCcCcEEECCCCccCccCHHHHhccc
Confidence            477873    57999999999999988765 99999999999999998887  899999999999999999999999999


Q ss_pred             CccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcC
Q psy1672         100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLN  179 (600)
Q Consensus       100 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls  179 (600)
                      +|++|+|++|.|+.++...|..+++|++|+|++|.++.+.+..|..+++|+.|+|++|.+..+.+..+.++++|+.|+++
T Consensus        74 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  153 (680)
T 1ziw_A           74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS  153 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC
T ss_pred             CcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc
Confidence            99999999999999999889999999999999999999988889999999999999999999988889999999999999


Q ss_pred             CCcCCCCCccccc--ccccccEEEccCCcCc
Q psy1672         180 GNRLSHFPVRSVE--PLLKLMMIELHDNPWV  208 (600)
Q Consensus       180 ~N~l~~l~~~~~~--~l~~L~~L~l~~N~~~  208 (600)
                      +|.++.++...+.  .+.+|+.|++.+|.+.
T Consensus       154 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          154 NNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             SSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCcccccCHHHhhccccccccEEECCCCccc
Confidence            9999998876554  3478999999999764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=2.7e-18  Score=199.80  Aligned_cols=217  Identities=25%  Similarity=0.450  Sum_probs=139.7

Q ss_pred             eEEEccCCCCCccCCCC--CCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEcc
Q psy1672          30 QWMECRDKFLITIPEAP--ESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS  107 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~--~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls  107 (600)
                      ..++..+..+..++...  ....++.|+|++|.+..++...|.  ++.+|+.|+|++|.++.+.+..|.++++|++|+|+
T Consensus       269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT--TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred             cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc--CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence            34555555555443221  112366666666666666555554  56666666666666666655556666666666666


Q ss_pred             CCCCCCCCccccCCCCCCCEEEccCCCCCccC------------------------------------------------
Q psy1672         108 DNLLTSIPSLTFQSVRFLRDLNLARNPISKIE------------------------------------------------  139 (600)
Q Consensus       108 ~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~------------------------------------------------  139 (600)
                      +|.|+.+++..|..+++|++|+|++|.++.+.                                                
T Consensus       347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~  426 (844)
T 3j0a_A          347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP  426 (844)
T ss_dssp             SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred             CCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCC
Confidence            66655555555555555555555544433211                                                


Q ss_pred             ----------------------------------------------cccccCCCCcceeeCCCCcCcccChhhhcCCCCC
Q psy1672         140 ----------------------------------------------KGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSL  173 (600)
Q Consensus       140 ----------------------------------------------~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L  173 (600)
                                                                    +..|..+++|+.|+|++|.|+.+.+..|.++++|
T Consensus       427 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  506 (844)
T 3j0a_A          427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL  506 (844)
T ss_dssp             TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC
T ss_pred             ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh
Confidence                                                          1224456677777777777777777788889999


Q ss_pred             CEEEcCCCcCCCCCccccc-------------------ccccccEEEccCCcCccccccccchhhhcccCC----CCCCC
Q psy1672         174 ESIKLNGNRLSHFPVRSVE-------------------PLLKLMMIELHDNPWVCDCNMRSIKMWLADKKN----VPVQP  230 (600)
Q Consensus       174 ~~L~Ls~N~l~~l~~~~~~-------------------~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~----~~~~~  230 (600)
                      +.|+|++|+|+.++...+.                   .+.+|+.+++.+|+|.|+|.+.|+..|+.....    .+..+
T Consensus       507 ~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~  586 (844)
T 3j0a_A          507 RGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADI  586 (844)
T ss_dssp             SEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGC
T ss_pred             heeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccC
Confidence            9999999999887754432                   134677889999999999999999999874322    12457


Q ss_pred             CCCCCccccccccccccc
Q psy1672         231 ACTGPERLSGKVFSDLHA  248 (600)
Q Consensus       231 ~C~~p~~l~g~~l~~l~~  248 (600)
                      .|..|..+.|..+.+++.
T Consensus       587 ~C~~p~~~~g~~l~~~~~  604 (844)
T 3j0a_A          587 YCVYPDSFSGVSLFSLST  604 (844)
T ss_dssp             CCSSCSSSCSCCTTTCCC
T ss_pred             ccCCchhhCCCccccCcc
Confidence            899999888887766544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=4.3e-18  Score=167.58  Aligned_cols=175  Identities=20%  Similarity=0.234  Sum_probs=158.8

Q ss_pred             ceEEEccCCCCCccCCCC--CCCCceEEEeeCCC-CCCCChhhhcccCCCCccEEEeec-ccCcccCccccCCCCCccEE
Q psy1672          29 KQWMECRDKFLITIPEAP--ESELTQVLDMSGNN-LQILPKEAFRRAGLLNLQKLFLAR-CHIGQIDSGALDGLTNLIEI  104 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~--~~~~l~~L~Ls~n~-L~~l~~~~f~~~~l~~L~~L~L~~-n~l~~i~~~~f~~l~~L~~L  104 (600)
                      -+.++..+.+++.+|...  ....+++|++++|. ++.++...|.  ++++|++|+|++ |.++.+++.+|.++++|++|
T Consensus        33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~--~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY--NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE--SCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC--CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            467888899999998732  23459999999997 9999998887  899999999998 99999999999999999999


Q ss_pred             EccCCCCCCCCccccCCCCCCC---EEEccCC-CCCccCcccccCCCCcc-eeeCCCCcCcccChhhhcCCCCCCEEEcC
Q psy1672         105 DLSDNLLTSIPSLTFQSVRFLR---DLNLARN-PISKIEKGAFQFVPGLV-KLDMSESRLEHISPEAFTGAKSLESIKLN  179 (600)
Q Consensus       105 ~Ls~N~l~~l~~~~f~~l~~L~---~L~Ls~N-~i~~l~~~~~~~l~~L~-~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls  179 (600)
                      +|++|.++.++.  |..+.+|+   +|++++| .++.+++..|..+++|+ .|++++|+++.++...|.. .+|+.|+|+
T Consensus       111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred             eCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence            999999999886  88899998   9999999 99999988899999999 9999999999998888876 899999999


Q ss_pred             CCc-CCCCCccccccc-ccccEEEccCCcCc
Q psy1672         180 GNR-LSHFPVRSVEPL-LKLMMIELHDNPWV  208 (600)
Q Consensus       180 ~N~-l~~l~~~~~~~l-~~L~~L~l~~N~~~  208 (600)
                      +|+ ++.++...|..+ ++|+.|++.+|.+.
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence            995 999998889999 99999999999865

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.76  E-value=1.6e-18  Score=191.50  Aligned_cols=173  Identities=26%  Similarity=0.390  Sum_probs=157.3

Q ss_pred             EEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCC
Q psy1672          32 MECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL  111 (600)
Q Consensus        32 v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l  111 (600)
                      .+|.+++++++|..++.. +++|+|++|.++.+++..|.  ++++|++|+|++|+++.+.+.+|.++++|++|+|++|.+
T Consensus        10 c~~~~~~l~~ip~~~~~~-L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLTAA-MKSLDLSFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             EECTTSCCSSCCSCCCTT-CCEEECCSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCccccccccCCCC-ccEEECcCCccCccChhhhh--cCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence            457889999999988765 99999999999999877776  899999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCCCCCEEEccCCCCCccC-cccccCCCCcceeeCCCCc-CcccChhhhcCCCCCCEEEcCCCcCCCCCcc
Q psy1672         112 TSIPSLTFQSVRFLRDLNLARNPISKIE-KGAFQFVPGLVKLDMSESR-LEHISPEAFTGAKSLESIKLNGNRLSHFPVR  189 (600)
Q Consensus       112 ~~l~~~~f~~l~~L~~L~Ls~N~i~~l~-~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  189 (600)
                      +.+++..|..+++|++|+|++|.++.+. +..|..+++|+.|++++|. +..+++..|.++++|+.|++++|.+....+.
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence            9999988999999999999999998753 4578999999999999998 7788778899999999999999999987777


Q ss_pred             cccccccccEEEccCCcC
Q psy1672         190 SVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       190 ~~~~l~~L~~L~l~~N~~  207 (600)
                      .+..+++|+.|++..|..
T Consensus       167 ~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          167 SLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             TTTTCSEEEEEEEECSBS
T ss_pred             hhhccccCceEecccCcc
Confidence            888889999999988864

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.76  E-value=4.6e-18  Score=188.77  Aligned_cols=176  Identities=19%  Similarity=0.204  Sum_probs=137.2

Q ss_pred             HHHHhhhcCCCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecc
Q psy1672           6 VFFVLVVSVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARC   85 (600)
Q Consensus         6 ~l~~~~~~~~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n   85 (600)
                      +++.++.....|+..|.|..   .+.++|.+.+++.+|..++.. +++|+|++|.|+.+++..|.  ++++|++|+|++|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~---~~~l~ls~~~L~~ip~~~~~~-L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N   86 (562)
T 3a79_B           13 HFVCALALIVGSMTPFSNEL---ESMVDYSNRNLTHVPKDLPPR-TKALSLSQNSISELRMPDIS--FLSELRVLRLSHN   86 (562)
T ss_dssp             -----------------------CCEEECTTSCCCSCCTTSCTT-CCEEECCSSCCCCCCGGGTT--TCTTCCEEECCSC
T ss_pred             HHHHHHHHHhccccccccCC---CcEEEcCCCCCccCCCCCCCC-cCEEECCCCCccccChhhhc--cCCCccEEECCCC
Confidence            34444455567777788874   378999999999999988765 99999999999999988887  8999999999999


Q ss_pred             cCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccC-cccccCCCCcceeeCCCCcCcccCh
Q psy1672          86 HIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIE-KGAFQFVPGLVKLDMSESRLEHISP  164 (600)
Q Consensus        86 ~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~-~~~~~~l~~L~~L~Ls~n~l~~i~~  164 (600)
                      .++.+.+.+|.++++|++|+|++|.|+.++..   .+++|++|+|++|.++.+. +..|..+++|+.|++++|.+.... 
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~-  162 (562)
T 3a79_B           87 RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD-  162 (562)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT-
T ss_pred             CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc-
Confidence            99999999999999999999999999999885   7899999999999999876 468999999999999999998753 


Q ss_pred             hhhcCCCCC--CEEEcCCCcC--CCCCcccccc
Q psy1672         165 EAFTGAKSL--ESIKLNGNRL--SHFPVRSVEP  193 (600)
Q Consensus       165 ~~~~~l~~L--~~L~Ls~N~l--~~l~~~~~~~  193 (600)
                        +..+.+|  +.|++++|.+  ....+..+..
T Consensus       163 --~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~  193 (562)
T 3a79_B          163 --LLPVAHLHLSCILLDLVSYHIKGGETESLQI  193 (562)
T ss_dssp             --TGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred             --hhhhhhceeeEEEeecccccccccCcccccc
Confidence              4455555  9999999998  5554444444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=1e-17  Score=166.37  Aligned_cols=153  Identities=24%  Similarity=0.399  Sum_probs=144.7

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      .++++++++.++.+|....     .+|+.|+|++|++..+.+.+|.++++|++|+|++|.|+.+++..|..+++|++|+|
T Consensus        16 ~~~l~~~~~~l~~~p~~~~-----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIP-----ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCC-----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CeEEecCCCCccccCCCCC-----CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            6789999999999997653     58999999999999999999999999999999999999999988999999999999


Q ss_pred             cCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       131 s~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      ++|.++.+.+..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|.|+.++...|..+++|+.|++.+|.+.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            999999999889999999999999999999999888999999999999999999999888999999999999999865

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.75  E-value=4.2e-18  Score=188.20  Aligned_cols=203  Identities=25%  Similarity=0.383  Sum_probs=144.6

Q ss_pred             eEEEccCCCCCccCCCC--CCCCceEEEeeCCCCCCC-ChhhhcccCCCCccEEEeecccCcccCc--cccCCCCCccEE
Q psy1672          30 QWMECRDKFLITIPEAP--ESELTQVLDMSGNNLQIL-PKEAFRRAGLLNLQKLFLARCHIGQIDS--GALDGLTNLIEI  104 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~--~~~~l~~L~Ls~n~L~~l-~~~~f~~~~l~~L~~L~L~~n~l~~i~~--~~f~~l~~L~~L  104 (600)
                      +.++..+..+..+|..+  ....+++|+|++|.+... +........+++|+.|+|++|.++.++.  ..|..+++|++|
T Consensus       313 ~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L  392 (549)
T 2z81_A          313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL  392 (549)
T ss_dssp             CEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred             eEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEE
Confidence            34555566666666533  123377788888777642 2211111256777777777777776643  446777778888


Q ss_pred             EccCCCCCCCCccccCCCCCCCEEEccCCCCCccCccc-----------------ccCCCCcceeeCCCCcCcccChhhh
Q psy1672         105 DLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGA-----------------FQFVPGLVKLDMSESRLEHISPEAF  167 (600)
Q Consensus       105 ~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~-----------------~~~l~~L~~L~Ls~n~l~~i~~~~~  167 (600)
                      +|++|.|+.++. .+..+++|++|+|++|.++.++...                 +..+++|+.|+|++|+|+.++.  .
T Consensus       393 ~Ls~N~l~~lp~-~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~--~  469 (549)
T 2z81_A          393 DISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD--A  469 (549)
T ss_dssp             ECTTCCCCCCCS-CCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC--G
T ss_pred             ECCCCCCccCCh-hhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC--c
Confidence            888887777765 4566667777777777766543321                 1367889999999999998865  4


Q ss_pred             cCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCccccc-cccchhhhcccCCCC-CCCCCCCC
Q psy1672         168 TGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCN-MRSIKMWLADKKNVP-VQPACTGP  235 (600)
Q Consensus       168 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~-l~~l~~w~~~~~~~~-~~~~C~~p  235 (600)
                      ..+++|+.|+|++|+++.+++..+..+++|+.|++++|+|.|+|. +.++..|+....... ....|..|
T Consensus       470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~~~~~~~C~~~  539 (549)
T 2z81_A          470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS  539 (549)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTTEESCCBBTTT
T ss_pred             ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhcccccCCCCeECCC
Confidence            568999999999999999998889999999999999999999998 577788987443222 45678765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.75  E-value=1.6e-17  Score=166.77  Aligned_cols=153  Identities=24%  Similarity=0.380  Sum_probs=143.5

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      .+.++++++.++.+|...     ..+|+.|+|++|+++.+++.+|.++++|++|+|++|.|+.++...|..+++|++|+|
T Consensus        18 ~~~l~~~~~~l~~ip~~~-----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNI-----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTEEECTTSCCSSCCSCC-----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCEEEccCCCCCccCCCC-----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            678999999999999754     358999999999999999889999999999999999999999988999999999999


Q ss_pred             cCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       131 s~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      ++|.++.++...|..+++|+.|+|++|.++.+.+..|..+++|+.|+|++|.+..++...|..+++|+.|++.+|.+.
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            999999998888999999999999999999999999999999999999999999999888899999999999999764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=1.8e-17  Score=155.31  Aligned_cols=136  Identities=27%  Similarity=0.532  Sum_probs=92.1

Q ss_pred             CCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEc
Q psy1672          99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKL  178 (600)
Q Consensus        99 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L  178 (600)
                      ++|++|+|++|.++.++...|..+++|++|+|++|.++.+.+..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            34555555555555555544555555555555555555555555556666666666666666666666667777888888


Q ss_pred             CCCcCCCCCcccccccccccEEEccCCcCccccc-cccchhhhcccCCCC-CCCCCCC
Q psy1672         179 NGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCN-MRSIKMWLADKKNVP-VQPACTG  234 (600)
Q Consensus       179 s~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~-l~~l~~w~~~~~~~~-~~~~C~~  234 (600)
                      ++|.++.++...+..+++|+.|++.+|+|.|+|. +.++..|+....... ....|..
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C~~  165 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG  165 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTGGGEESCCBBTT
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHhhCccccccCcEeCC
Confidence            8888888777777788899999999999999997 788889987443222 4456664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.73  E-value=1.5e-17  Score=193.43  Aligned_cols=180  Identities=26%  Similarity=0.282  Sum_probs=154.3

Q ss_pred             CCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecc-cCcccCccccCCC
Q psy1672          20 TCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIGQIDSGALDGL   98 (600)
Q Consensus        20 ~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n-~l~~i~~~~f~~l   98 (600)
                      .|.|.    ...++|.+.+++.||. ++.. +++|+|++|.|+.+....|.  ++.+|+.|+|++| .+..+.+.+|.++
T Consensus         1 ~C~~~----~~~~dcs~~~L~~vP~-lp~~-l~~LdLs~N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f~~L   72 (844)
T 3j0a_A            1 SCSFD----GRIAFYRFCNLTQVPQ-VLNT-TERLLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNL   72 (844)
T ss_dssp             CCBTT----TEEEEESCCCSSCCCS-SCTT-CCEEEEESCCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTTSSC
T ss_pred             CceEe----ceEEEccCCCCCCCCC-CCCC-cCEEECCCCcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHhcCC
Confidence            47776    4789999999999999 6665 99999999999999888887  8999999999999 5677888899999


Q ss_pred             CCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccC--cccccCCCCcceeeCCCCcCcccCh-hhhcCCCCCCE
Q psy1672          99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIE--KGAFQFVPGLVKLDMSESRLEHISP-EAFTGAKSLES  175 (600)
Q Consensus        99 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~--~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~  175 (600)
                      ++|++|+|++|.|+.+.+..|..+++|++|+|++|.++...  ...|..+++|+.|+|++|.+..+.+ ..|+++++|+.
T Consensus        73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~  152 (844)
T 3j0a_A           73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS  152 (844)
T ss_dssp             TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred             CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence            99999999999999998889999999999999999998733  3458899999999999999988754 57899999999


Q ss_pred             EEcCCCcCCCCCccccccc--ccccEEEccCCcC
Q psy1672         176 IKLNGNRLSHFPVRSVEPL--LKLMMIELHDNPW  207 (600)
Q Consensus       176 L~Ls~N~l~~l~~~~~~~l--~~L~~L~l~~N~~  207 (600)
                      |+|++|.+..+....+..+  .+|+.|++.+|.+
T Consensus       153 L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l  186 (844)
T 3j0a_A          153 IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL  186 (844)
T ss_dssp             EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred             EECCCCcCCeeCHHHcccccCCccceEECCCCcc
Confidence            9999999988776666555  4555555555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.73  E-value=3.5e-17  Score=173.07  Aligned_cols=30  Identities=17%  Similarity=0.244  Sum_probs=19.2

Q ss_pred             cccccccEEEccCCcCccccccccchhhhc
Q psy1672         192 EPLLKLMMIELHDNPWVCDCNMRSIKMWLA  221 (600)
Q Consensus       192 ~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~  221 (600)
                      ..+++|+.|++.+|+|.|+|...++..|..
T Consensus       336 ~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~  365 (390)
T 3o6n_A          336 STHHTLKNLTLSHNDWDCNSLRALFRNVAR  365 (390)
T ss_dssp             CTTCCCSEEECCSSCEEHHHHHHHTTTCCT
T ss_pred             hhhccCCEEEcCCCCccchhHHHHHHHHHh
Confidence            445566777777777777776655554433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.73  E-value=5.8e-18  Score=187.77  Aligned_cols=183  Identities=28%  Similarity=0.443  Sum_probs=141.3

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCc-cccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEE
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS-GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLN  129 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  129 (600)
                      +++|++++|.+..++.. |.  .+.+|+.|++++|.+..+.+ ..|..+++|++|+|++|.++.+.+..|..+++|++|+
T Consensus       375 L~~L~l~~n~l~~~~~~-~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  451 (570)
T 2z63_A          375 LKYLDLSFNGVITMSSN-FL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  451 (570)
T ss_dssp             CCEEECCSCSEEEEEEE-EE--TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             cCEEECCCCcccccccc-cc--ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence            44444444444444433 32  56666666666666655533 4577788888888888888877777788888899999


Q ss_pred             ccCCCCC-ccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         130 LARNPIS-KIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       130 Ls~N~i~-~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      |++|.++ ...+..|..+++|+.|+|++|+++.+.+..|..+++|+.|+|++|.++.++...|..+++|+.|++.+|+|.
T Consensus       452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence            9999886 334567888999999999999999998889999999999999999999999888999999999999999999


Q ss_pred             cccccccch-hhhcccCC-CCCCCCCCCCc
Q psy1672         209 CDCNMRSIK-MWLADKKN-VPVQPACTGPE  236 (600)
Q Consensus       209 C~C~l~~l~-~w~~~~~~-~~~~~~C~~p~  236 (600)
                      |+|...|+. .|+..... +.....|..|.
T Consensus       532 ~~~~~~~~~~~wl~~~~~~~~~~~~C~~~~  561 (570)
T 2z63_A          532 CSCPRIDYLSRWLNKNSQKEQGSAKCSGSG  561 (570)
T ss_dssp             CCTTTTHHHHHHHHHTGGGEESCCBBTTTC
T ss_pred             CCCcchHHHHHHHHhccccCCCchhhCCCC
Confidence            999998887 99885322 22333787663

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=3.3e-17  Score=171.68  Aligned_cols=152  Identities=27%  Similarity=0.344  Sum_probs=141.1

Q ss_pred             eEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccC-CCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD-GLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        52 ~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      +.++++++.|+.+|...+     ..|+.|+|++|+|+.+.+..|. ++++|++|+|++|+|+.+++..|..+++|++|+|
T Consensus        21 ~~l~c~~~~l~~iP~~~~-----~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP-----SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC-----TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcCccCccCC-----CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            579999999999998654     4689999999999999998888 9999999999999999999989999999999999


Q ss_pred             cCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccc---cccccccEEEccCCcC
Q psy1672         131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSV---EPLLKLMMIELHDNPW  207 (600)
Q Consensus       131 s~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~---~~l~~L~~L~l~~N~~  207 (600)
                      ++|.|+.+.+..|..+++|+.|+|++|+|..+.+..|..+++|+.|+|++|.|+.++...|   ..+++|+.|++++|.+
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            9999999998899999999999999999999999999999999999999999999998777   5689999999999987


Q ss_pred             c
Q psy1672         208 V  208 (600)
Q Consensus       208 ~  208 (600)
                      .
T Consensus       176 ~  176 (361)
T 2xot_A          176 K  176 (361)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.72  E-value=9.4e-17  Score=162.26  Aligned_cols=146  Identities=30%  Similarity=0.440  Sum_probs=119.6

Q ss_pred             eEEEccCCCCCccCC-CC-CCCCceEEEeeCCC-CCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEc
Q psy1672          30 QWMECRDKFLITIPE-AP-ESELTQVLDMSGNN-LQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDL  106 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~-~~-~~~~l~~L~Ls~n~-L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~L  106 (600)
                      +.++..+..++.++. .+ ....+++|+|++|. +..++...|.  .+.+|+.|+|++|.++.+.+..|.++++|++|+|
T Consensus        59 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  136 (285)
T 1ozn_A           59 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH--GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL  136 (285)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc--CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEEC
Confidence            344555555555532 11 11337777777776 7777666665  6888888888888888888888899999999999


Q ss_pred             cCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEE
Q psy1672         107 SDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIK  177 (600)
Q Consensus       107 s~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~  177 (600)
                      ++|.++.++...|..+++|++|+|++|.++.+....|..+++|+.|+|++|.+..+.+..|..+++|+.|+
T Consensus       137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  207 (285)
T 1ozn_A          137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (285)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEee
Confidence            99999999988899999999999999999999888899999999999999999999889999999999985

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.71  E-value=1.3e-16  Score=164.67  Aligned_cols=171  Identities=24%  Similarity=0.337  Sum_probs=94.9

Q ss_pred             eEEEccCCCCCcc-CCCCC-CCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEcc
Q psy1672          30 QWMECRDKFLITI-PEAPE-SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS  107 (600)
Q Consensus        30 ~~v~C~~~~L~~i-p~~~~-~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls  107 (600)
                      +.++..+..+..+ |..+. ...+++|+|++|.|+.++...+     .+|+.|++++|.++.+.+..|.++++|++|+|+
T Consensus        79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  153 (330)
T 1xku_A           79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-----KTLQELRVHENEITKVRKSVFNGLNQMIVVELG  153 (330)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred             CEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-----ccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence            3455555555555 22221 1236666666666666655432     356666666666666655556666666666666


Q ss_pred             CCCCCC--CCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCC
Q psy1672         108 DNLLTS--IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH  185 (600)
Q Consensus       108 ~N~l~~--l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~  185 (600)
                      +|.++.  +....|..+++|++|++++|.++.++...+   ++|+.|++++|.+..+.+..|..+++|+.|+|++|.+..
T Consensus       154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  230 (330)
T 1xku_A          154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA  230 (330)
T ss_dssp             SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred             CCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence            665543  333445555566666666666555543322   455556666666555555555555566666666665555


Q ss_pred             CCcccccccccccEEEccCCcCc
Q psy1672         186 FPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       186 l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      ++...+..+++|+.|++.+|.+.
T Consensus       231 ~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          231 VDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             ECTTTGGGSTTCCEEECCSSCCS
T ss_pred             eChhhccCCCCCCEEECCCCcCc
Confidence            55545555555666666555543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.71  E-value=6.7e-17  Score=170.93  Aligned_cols=174  Identities=23%  Similarity=0.345  Sum_probs=152.7

Q ss_pred             eEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCC
Q psy1672          30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN  109 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N  109 (600)
                      ..+.+........+..+....+++|++++|.++.+|...|.  .+++|+.|+|++|.+..+.+.+|..+++|++|+|++|
T Consensus        26 ~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n  103 (390)
T 3o6n_A           26 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN  103 (390)
T ss_dssp             CEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             eeeecccccccccccccccCCceEEEecCCchhhCChhHhc--ccccCcEEECCCCcccccChhhccCCCCcCEEECCCC
Confidence            34455555555555555555699999999999999999887  7999999999999999999889999999999999999


Q ss_pred             CCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcc
Q psy1672         110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVR  189 (600)
Q Consensus       110 ~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  189 (600)
                      .++.+++..|..+++|++|+|++|.++.++...|..+++|+.|++++|.+..+.+..|..+++|+.|++++|.++.++  
T Consensus       104 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--  181 (390)
T 3o6n_A          104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--  181 (390)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--
T ss_pred             CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--
Confidence            999999888999999999999999999998888899999999999999999999989999999999999999999885  


Q ss_pred             cccccccccEEEccCCcCc
Q psy1672         190 SVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       190 ~~~~l~~L~~L~l~~N~~~  208 (600)
                       +..+++|+.+++.+|.+.
T Consensus       182 -~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          182 -LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             -GGGCTTCSEEECCSSCCS
T ss_pred             -cccccccceeeccccccc
Confidence             455677888888887654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.71  E-value=6.7e-17  Score=162.43  Aligned_cols=154  Identities=23%  Similarity=0.360  Sum_probs=142.6

Q ss_pred             CCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEE
Q psy1672          49 ELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDL  128 (600)
Q Consensus        49 ~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L  128 (600)
                      ..++.|++++|.++.++.  +.  .+++|+.|+|++|.+..++  .+..+++|++|+|++|.|+.+++..|..+++|++|
T Consensus        41 ~~L~~L~l~~~~i~~~~~--l~--~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQG--IQ--YLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             TTCCEEECTTSCCCCCTT--GG--GCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cceeeeeeCCCCcccccc--cc--cCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            349999999999998874  33  6999999999999999874  58999999999999999999999889999999999


Q ss_pred             EccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         129 NLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       129 ~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      +|++|.++.+.+..|..+++|+.|+|++|.++.+.+..|..+++|+.|+|++|.++.++...+..+++|+.|++.+|.+.
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            99999999998888999999999999999999999888999999999999999999999888899999999999999865

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=1.8e-16  Score=152.51  Aligned_cols=110  Identities=25%  Similarity=0.404  Sum_probs=81.2

Q ss_pred             CCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEc
Q psy1672          99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKL  178 (600)
Q Consensus        99 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L  178 (600)
                      ++|++|+|++|.|+.++...|..+++|++|+|++|.++.+.+..|..+++|+.|+|++|+++.+++..|..+++|+.|+|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            35556666666666555555556666666666666666665555666677777777777777776667778888999999


Q ss_pred             CCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         179 NGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       179 s~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      ++|.+..++...|..+++|+.|++.+|.+.
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            999999988888889999999999999865

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=1.5e-16  Score=177.87  Aligned_cols=104  Identities=25%  Similarity=0.341  Sum_probs=53.9

Q ss_pred             EEEccCCCCCccCCC--CCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          31 WMECRDKFLITIPEA--PESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        31 ~v~C~~~~L~~ip~~--~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      .++..+..+..++..  .....|++|+|++|.|+.+++..|.  ++++|+.|+|++|.|+.+++..|.++++|++|+|++
T Consensus        79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~  156 (597)
T 3oja_B           79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN  156 (597)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc--CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence            445555555555431  1122355555555555555555544  455555555555555555555555555555555555


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCC
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPIS  136 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~  136 (600)
                      |.|+.+++..|..+++|++|+|++|.++
T Consensus       157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          157 NNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             CcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            5555555544555555555555555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.70  E-value=1.8e-16  Score=163.96  Aligned_cols=171  Identities=24%  Similarity=0.310  Sum_probs=86.6

Q ss_pred             EEEccCCCCCccCC-CC-CCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          31 WMECRDKFLITIPE-AP-ESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        31 ~v~C~~~~L~~ip~-~~-~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      .++..+..++.++. .+ ....+++|+|++|.++.++...+     .+|++|++++|.++.+++..|.++++|++|++++
T Consensus        82 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  156 (332)
T 2ft3_A           82 ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG  156 (332)
T ss_dssp             EEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS
T ss_pred             EEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-----ccCCEEECCCCccCccCHhHhCCCccCCEEECCC
Confidence            44555555555422 11 11235666666666655554432     4555666666655555555555555666666655


Q ss_pred             CCCCC--CCccccCCC--------------------CCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhh
Q psy1672         109 NLLTS--IPSLTFQSV--------------------RFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEA  166 (600)
Q Consensus       109 N~l~~--l~~~~f~~l--------------------~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~  166 (600)
                      |.++.  +.+..|..+                    ++|++|+|++|.++.+.+..|..+++|+.|+|++|.+..+.+..
T Consensus       157 n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  236 (332)
T 2ft3_A          157 NPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS  236 (332)
T ss_dssp             CCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred             CccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence            55542  333344444                    34444555555555444444555555555555555555554444


Q ss_pred             hcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcC
Q psy1672         167 FTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       167 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~  207 (600)
                      +..+++|+.|+|++|.+..++. .+..+++|+.|++.+|.+
T Consensus       237 ~~~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          237 LSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCCT-TGGGCTTCCEEECCSSCC
T ss_pred             hhCCCCCCEEECCCCcCeecCh-hhhcCccCCEEECCCCCC
Confidence            5555555555555555554442 244445555555555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.69  E-value=3.1e-16  Score=160.58  Aligned_cols=167  Identities=19%  Similarity=0.294  Sum_probs=142.8

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -+.+++.+..+..++.......+++|+|++|.+..++.  +.  .+++|+.|+|++|.++.++  .|..+++|++|+|++
T Consensus        43 L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTT
T ss_pred             cCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--Hc--cCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCC
Confidence            45788888888888765444559999999999998887  44  7999999999999998874  488999999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      |.|+.++.  +..+++|+.|+|++|.++.+.+  +..+++|+.|+|++|.+..+.+  +..+++|+.|+|++|.++.++.
T Consensus       117 n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          117 TQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh
Confidence            99998865  8889999999999999988755  7889999999999999998855  8889999999999999998874


Q ss_pred             ccccccccccEEEccCCcCcc
Q psy1672         189 RSVEPLLKLMMIELHDNPWVC  209 (600)
Q Consensus       189 ~~~~~l~~L~~L~l~~N~~~C  209 (600)
                        +..+++|+.|++++|.+..
T Consensus       191 --l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          191 --LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             --GGGCTTCCEEECTTSCCCB
T ss_pred             --hcCCCCCCEEEccCCccCc
Confidence              7888899999999998654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.69  E-value=1.2e-16  Score=149.10  Aligned_cols=117  Identities=32%  Similarity=0.516  Sum_probs=96.0

Q ss_pred             CCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCcccc
Q psy1672          16 SCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGAL   95 (600)
Q Consensus        16 ~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f   95 (600)
                      +||..|.|.+    ..++|.+.+++.+|..++.. +++|+|++|.|+.+++..|.  ++.+|+.|+|++|+|+.+++..|
T Consensus         2 ~CP~~C~C~~----~~l~~s~n~l~~ip~~~~~~-l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f   74 (170)
T 3g39_A            2 ACPSQCSCSG----TTVDCSGKSLASVPTGIPTT-TQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDNNQLTVLPAGVF   74 (170)
T ss_dssp             CCC-CCEEET----TEEECTTSCCSSCCSCCCTT-CSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTT
T ss_pred             cCcCcCCcCC----CEEEeCCCCcCccCccCCCC-CcEEEcCCCcCCccChhhhc--CcccCCEEECCCCCcCccChhhc
Confidence            6999999986    46999999999999877655 88899999998888777776  78888888888888888888778


Q ss_pred             CCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccC
Q psy1672          96 DGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIE  139 (600)
Q Consensus        96 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~  139 (600)
                      .++++|++|+|++|+|+.+++..|..+++|+.|+|++|++...+
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             cCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            88888888888888888888777777888888888888776553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.69  E-value=8.3e-17  Score=165.23  Aligned_cols=173  Identities=20%  Similarity=0.301  Sum_probs=87.7

Q ss_pred             CCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCC---CChhhhcccCCCCccEEEeec-ccCcccCccc
Q psy1672          19 STCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQI---LPKEAFRRAGLLNLQKLFLAR-CHIGQIDSGA   94 (600)
Q Consensus        19 ~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~---l~~~~f~~~~l~~L~~L~L~~-n~l~~i~~~~   94 (600)
                      ..|.|.|.+    |.|.....       .. .++.|+|++|.+..   ++.. |.  .+++|++|+|++ |.+....+..
T Consensus        32 ~~C~~~w~g----v~C~~~~~-------~~-~l~~L~L~~~~l~~~~~~~~~-l~--~l~~L~~L~L~~~n~l~~~~p~~   96 (313)
T 1ogq_A           32 DCCNRTWLG----VLCDTDTQ-------TY-RVNNLDLSGLNLPKPYPIPSS-LA--NLPYLNFLYIGGINNLVGPIPPA   96 (313)
T ss_dssp             CTTTTCSTT----EEECCSSS-------CC-CEEEEEEECCCCSSCEECCGG-GG--GCTTCSEEEEEEETTEESCCCGG
T ss_pred             CCCcCCCcc----eEeCCCCC-------Cc-eEEEEECCCCCccCCcccChh-Hh--CCCCCCeeeCCCCCcccccCChh
Confidence            456666876    67753210       01 15555555555553   3332 22  455555555552 5554444444


Q ss_pred             cCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCC-CC
Q psy1672          95 LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK-SL  173 (600)
Q Consensus        95 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~-~L  173 (600)
                      |..+++|++|+|++|.++...+..|..+++|++|+|++|.++...+..|..+++|+.|+|++|++....+..+..+. +|
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L  176 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF  176 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred             HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence            55555555555555555533333455555555555555555544444455555555555555555533344444444 55


Q ss_pred             CEEEcCCCcCCCCCcccccccccccEEEccCCcC
Q psy1672         174 ESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       174 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~  207 (600)
                      +.|+|++|.+....+..+..+. |+.|++.+|.+
T Consensus       177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             cEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            5555555555533333444443 55555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.69  E-value=1.7e-16  Score=161.05  Aligned_cols=150  Identities=25%  Similarity=0.310  Sum_probs=122.6

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      +++|+++++.|+.+|...+     .+|+.|+|++|.++.+.+..|..+++|++|+|++|.|+.++..  ..+++|++|+|
T Consensus        12 l~~l~~~~~~l~~ip~~~~-----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~L   84 (290)
T 1p9a_G           12 HLEVNCDKRNLTALPPDLP-----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDL   84 (290)
T ss_dssp             CCEEECTTSCCSSCCSCCC-----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEEC
T ss_pred             ccEEECCCCCCCcCCCCCC-----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEEC
Confidence            8999999999999997654     5899999999999999888999999999999999999887653  56777888888


Q ss_pred             cCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       131 s~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      ++|.++.++ ..+..+++|+.|+|++|+|+.+++..|.++++|+.|+|++|+|+.++...|..+++|+.|++.+|.+.
T Consensus        85 s~N~l~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           85 SHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             CSSCCSSCC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCcCCcCc-hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            888877664 35667777888888888888777777777778888888888887777777777777778887777654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.68  E-value=3.3e-16  Score=161.85  Aligned_cols=175  Identities=21%  Similarity=0.229  Sum_probs=145.9

Q ss_pred             CceEEEccCCCCCccCCCCC-CCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEc
Q psy1672          28 GKQWMECRDKFLITIPEAPE-SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDL  106 (600)
Q Consensus        28 ~~~~v~C~~~~L~~ip~~~~-~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~L  106 (600)
                      ....++..+..+..+|..+. ...+++|+|++|.|+.+|....   .+.+|++|+|++|.++.++ ..|..+++|++|+|
T Consensus        82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~---~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ---QFAGLETLTLARNPLRALP-ASIASLNRLRELSI  157 (328)
T ss_dssp             TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGG---GGTTCSEEEEESCCCCCCC-GGGGGCTTCCEEEE
T ss_pred             ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHh---ccCCCCEEECCCCccccCc-HHHhcCcCCCEEEC
Confidence            35678999999999997543 3459999999999999887654   6999999999999999874 45899999999999


Q ss_pred             cCCCCC-CCCccc--------cCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEE
Q psy1672         107 SDNLLT-SIPSLT--------FQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIK  177 (600)
Q Consensus       107 s~N~l~-~l~~~~--------f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~  177 (600)
                      ++|++. .++...        |..+++|++|+|++|.++.++ ..|..+++|+.|+|++|.+..+++ .+..+++|+.|+
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~  235 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELD  235 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEE
Confidence            997554 454421        334899999999999999774 458899999999999999998855 588999999999


Q ss_pred             cCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         178 LNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       178 Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      |++|.+....+..+..+++|+.|++.+|.+.
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  266 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNL  266 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence            9998888776778888999999999998754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.68  E-value=2.6e-16  Score=159.79  Aligned_cols=167  Identities=22%  Similarity=0.314  Sum_probs=130.6

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -+.+++.+..+..++.......+++|+|++|.++.++.  +.  .+.+|+.|+|++|.++.++.  +..+++|++|+|++
T Consensus        48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEH  121 (291)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTT
T ss_pred             ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cc--cCCCCCEEECCCCcCCCChh--hccCCCCCEEECCC
Confidence            35677777778777654444458888888888888776  43  68888888888888887643  78888888888888


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      |.|+.++  .+..+++|+.|+|++|.++.+  ..+..+++|+.|+|++|++..+.+  +..+++|+.|+|++|.++.++ 
T Consensus       122 n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~-  194 (291)
T 1h6t_A          122 NGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-  194 (291)
T ss_dssp             SCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-
T ss_pred             CcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh-
Confidence            8888874  467788888888888888877  457788888888888888888754  778888888888888888875 


Q ss_pred             ccccccccccEEEccCCcCcc
Q psy1672         189 RSVEPLLKLMMIELHDNPWVC  209 (600)
Q Consensus       189 ~~~~~l~~L~~L~l~~N~~~C  209 (600)
                       .+..+++|+.|++.+|++.+
T Consensus       195 -~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          195 -ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -GGTTCTTCSEEEEEEEEEEC
T ss_pred             -hhccCCCCCEEECcCCcccC
Confidence             37778888888888887543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.68  E-value=2.2e-16  Score=147.73  Aligned_cols=120  Identities=31%  Similarity=0.558  Sum_probs=96.1

Q ss_pred             cCCCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCc
Q psy1672          13 SVSSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS   92 (600)
Q Consensus        13 ~~~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~   92 (600)
                      +..+||..|.|.    ...++|.+.++..+|..++.. +++|+|++|.|+.+++..|.  ++.+|+.|+|++|+|+.+++
T Consensus         2 ~~~~CP~~C~C~----~~~l~~~~n~l~~iP~~~~~~-L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~   74 (174)
T 2r9u_A            2 HSAGCPSQCSCD----QTLVNCQNIRLASVPAGIPTD-KQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNSNKLTAIPT   74 (174)
T ss_dssp             CCCSSCTTSEEC----SSEEECCSSCCSSCCSCCCTT-CSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCT
T ss_pred             CCCCCCCCCEEC----CcEEEeCCCCCCccCCCcCCC-CcEEEeCCCCccccCHHHhc--CCcCCCEEECCCCCCCccCh
Confidence            456899999997    467999999999999877755 88888888888888777776  67888888888888888877


Q ss_pred             cccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccC
Q psy1672          93 GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIE  139 (600)
Q Consensus        93 ~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~  139 (600)
                      ..|.++++|++|+|++|+|+.+++..|..+++|+.|+|++|++...+
T Consensus        75 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           75 GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             hHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            77777888888888888888777766777777777777777776553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.68  E-value=2.3e-16  Score=176.38  Aligned_cols=174  Identities=23%  Similarity=0.345  Sum_probs=152.0

Q ss_pred             eEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCC
Q psy1672          30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN  109 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N  109 (600)
                      ..+.|........+..+....++.|++++|.+..+|...|.  .+++|+.|+|++|.+..+.+..|..+++|++|+|++|
T Consensus        32 ~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  109 (597)
T 3oja_B           32 VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN  109 (597)
T ss_dssp             CEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHc--cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC
Confidence            34566555555555555555699999999999999999887  7999999999999999999889999999999999999


Q ss_pred             CCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcc
Q psy1672         110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVR  189 (600)
Q Consensus       110 ~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  189 (600)
                      .|+.+++..|..+++|++|+|++|.++.+++..|..+++|+.|+|++|.+..+.+..|..+++|+.|+|++|.+..++  
T Consensus       110 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--  187 (597)
T 3oja_B          110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--  187 (597)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--
T ss_pred             cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--
Confidence            999999988999999999999999999998888899999999999999999999999999999999999999999886  


Q ss_pred             cccccccccEEEccCCcCc
Q psy1672         190 SVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       190 ~~~~l~~L~~L~l~~N~~~  208 (600)
                       +..+++|+.|++.+|.+.
T Consensus       188 -~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          188 -LSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             -GGGCTTCSEEECCSSCCS
T ss_pred             -hhhhhhhhhhhcccCccc
Confidence             344567777777777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.68  E-value=2e-16  Score=147.49  Aligned_cols=121  Identities=28%  Similarity=0.500  Sum_probs=104.3

Q ss_pred             ccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCC
Q psy1672         101 LIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNG  180 (600)
Q Consensus       101 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~  180 (600)
                      .+.|++++|.|+.+|...   ..+|+.|+|++|.|+.+.+..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++
T Consensus        11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            467888888888887643   26788888888888888888888888899999999999888888888899999999999


Q ss_pred             CcCCCCCcccccccccccEEEccCCcCccccc-cccchhhhcccC
Q psy1672         181 NRLSHFPVRSVEPLLKLMMIELHDNPWVCDCN-MRSIKMWLADKK  224 (600)
Q Consensus       181 N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~-l~~l~~w~~~~~  224 (600)
                      |+|+.++...|..+++|+.|++.+|+|.|+|. +.++..|+....
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~  132 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHP  132 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCG
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCc
Confidence            99999988888999999999999999999995 999999988543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=4e-16  Score=148.85  Aligned_cols=147  Identities=15%  Similarity=0.210  Sum_probs=130.2

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      ++.|++++|.++.++ . +.  .+++|+.|++++|.+..+.  .|..+++|++|+|++|.++......|..+++|++|+|
T Consensus        46 L~~L~l~~n~i~~l~-~-l~--~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           46 LTYITLANINVTDLT-G-IE--YAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             CCEEEEESSCCSCCT-T-GG--GCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             ccEEeccCCCccChH-H-Hh--cCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            899999999999988 3 33  6999999999999887764  5899999999999999999755557899999999999


Q ss_pred             cCCCCCccCcccccCCCCcceeeCCCCc-CcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcC
Q psy1672         131 ARNPISKIEKGAFQFVPGLVKLDMSESR-LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       131 s~N~i~~l~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~  207 (600)
                      ++|.++...+..|..+++|+.|++++|. +..++  .+..+++|+.|++++|.++.++  .+..+++|+.|++.+|++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            9999998667788999999999999998 88884  6889999999999999999986  688899999999999985

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.67  E-value=3.5e-16  Score=160.17  Aligned_cols=167  Identities=22%  Similarity=0.352  Sum_probs=148.0

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -+.++..+..+..++.......+++|+|++|.++.++  .+.  .+.+|+.|+|++|.++.+++  |..+++|++|+|++
T Consensus        65 L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~  138 (308)
T 1h6u_A           65 LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDL  138 (308)
T ss_dssp             CCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--GGT--TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--hhc--CCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCC
Confidence            4678888888988886444455999999999999986  344  79999999999999999864  89999999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      |.++.++.  +..+++|+.|+|++|.++.+.+  +..+++|+.|++++|.+..+.+  +..+++|+.|+|++|.+..++ 
T Consensus       139 n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~-  211 (308)
T 1h6u_A          139 NQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS-  211 (308)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG-
T ss_pred             CccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc-
Confidence            99999876  8889999999999999998865  8899999999999999999854  788999999999999999987 


Q ss_pred             ccccccccccEEEccCCcCcc
Q psy1672         189 RSVEPLLKLMMIELHDNPWVC  209 (600)
Q Consensus       189 ~~~~~l~~L~~L~l~~N~~~C  209 (600)
                       .+..+++|+.|++.+|++.+
T Consensus       212 -~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          212 -PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             -GGTTCTTCCEEEEEEEEEEC
T ss_pred             -cccCCCCCCEEEccCCeeec
Confidence             37889999999999999764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.67  E-value=5.2e-17  Score=167.02  Aligned_cols=174  Identities=19%  Similarity=0.236  Sum_probs=139.4

Q ss_pred             EEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCC
Q psy1672          31 WMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL  110 (600)
Q Consensus        31 ~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~  110 (600)
                      .++..+..++.++..   ..+++|++++|.++.++..     .+.+|+.|++++|.++.+.+..|..+++|++|+|++|.
T Consensus        84 ~L~Ls~n~l~~l~~~---~~L~~L~l~~n~l~~~~~~-----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  155 (317)
T 3o53_A           84 TLDLNNNYVQELLVG---PSIETLHAANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE  155 (317)
T ss_dssp             EEECCSSEEEEEEEC---TTCCEEECCSSCCSEEEEC-----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred             EEECcCCccccccCC---CCcCEEECCCCccCCcCcc-----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence            344444445544432   2266666666666665543     35789999999999999988889999999999999999


Q ss_pred             CCCCCcccc-CCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcc
Q psy1672         111 LTSIPSLTF-QSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVR  189 (600)
Q Consensus       111 l~~l~~~~f-~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  189 (600)
                      ++.++...+ ..+++|++|+|++|.++.+...  ..+++|+.|+|++|+++.+++. +..+++|+.|+|++|.++.++. 
T Consensus       156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~-  231 (317)
T 3o53_A          156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-  231 (317)
T ss_dssp             CCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-
T ss_pred             CCcccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh-
Confidence            998766555 4689999999999999988443  3589999999999999999765 8889999999999999999875 


Q ss_pred             cccccccccEEEccCCcCccccccccc
Q psy1672         190 SVEPLLKLMMIELHDNPWVCDCNMRSI  216 (600)
Q Consensus       190 ~~~~l~~L~~L~l~~N~~~C~C~l~~l  216 (600)
                      .+..+++|+.|++.+|++.|+|-..++
T Consensus       232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~  258 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred             HhhcCCCCCEEEccCCCccCcCHHHHH
Confidence            578889999999999999998755444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=2.4e-16  Score=157.68  Aligned_cols=163  Identities=22%  Similarity=0.316  Sum_probs=139.5

Q ss_pred             EccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCC
Q psy1672          33 ECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLT  112 (600)
Q Consensus        33 ~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~  112 (600)
                      ++.+..++.++.......+++|++++|.|+.++  .+.  .+.+|+.|+|++|.++.+++  |..+++|++|+|++|.|+
T Consensus        25 ~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~   98 (263)
T 1xeu_A           25 NLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQ--FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK   98 (263)
T ss_dssp             HHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS
T ss_pred             HhcCCCcccccchhhcCcCcEEECcCCCcccch--HHh--hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC
Confidence            345566666664333344999999999999988  343  69999999999999999976  899999999999999999


Q ss_pred             CCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCccccc
Q psy1672         113 SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVE  192 (600)
Q Consensus       113 ~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  192 (600)
                      .++...  . ++|+.|+|++|.++.+.  .+..+++|+.|+|++|+|+.+.  .+..+++|+.|+|++|.+..+  ..+.
T Consensus        99 ~l~~~~--~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~  169 (263)
T 1xeu_A           99 NLNGIP--S-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLT  169 (263)
T ss_dssp             CCTTCC--C-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTST
T ss_pred             CcCccc--c-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhc
Confidence            988633  3 88999999999999874  4889999999999999999983  688999999999999999998  5688


Q ss_pred             ccccccEEEccCCcCccc
Q psy1672         193 PLLKLMMIELHDNPWVCD  210 (600)
Q Consensus       193 ~l~~L~~L~l~~N~~~C~  210 (600)
                      .+++|+.|++.+|++.+.
T Consensus       170 ~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          170 RLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TCCCCCEEEEEEEEEECC
T ss_pred             cCCCCCEEeCCCCcccCC
Confidence            899999999999997654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.66  E-value=4.2e-16  Score=167.68  Aligned_cols=153  Identities=25%  Similarity=0.288  Sum_probs=140.8

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      .+.++.+++.|+.+|...+     .+|+.|+|++|+|+.+.+..|.++++|++|+|++|.|+.++...|..+++|++|+|
T Consensus        45 ~~~v~c~~~~l~~iP~~~~-----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS-----TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC-----TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCCCcCcCCCCCC-----CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            5678999999999998654     58999999999999999999999999999999999999999989999999999999


Q ss_pred             cCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCC-CcCCCCCcccccccccccEEEccCCcCc
Q psy1672         131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNG-NRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       131 s~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      ++|.++.+.+..|..+++|+.|+|++|.|..+.+..|..+++|+.|+|++ |.+..++...|..+++|+.|++.+|.+.
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  198 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR  198 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence            99999999988999999999999999999999988999999999999998 6777788778888899999999988765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.66  E-value=6.1e-16  Score=159.87  Aligned_cols=152  Identities=20%  Similarity=0.310  Sum_probs=132.0

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      ++.|+|++|.|+.+|..++   .+.+|++|+|++|.+..++ ..|..+++|++|+|++|.|+.++. .|..+++|++|+|
T Consensus        83 l~~L~L~~n~l~~lp~~l~---~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L  157 (328)
T 4fcg_A           83 RVALELRSVPLPQFPDQAF---RLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSI  157 (328)
T ss_dssp             CCEEEEESSCCSSCCSCGG---GGTTCSEEEEESSCCCCCC-SCGGGGTTCSEEEEESCCCCCCCG-GGGGCTTCCEEEE
T ss_pred             eeEEEccCCCchhcChhhh---hCCCCCEEECCCCCccchh-HHHhccCCCCEEECCCCccccCcH-HHhcCcCCCEEEC
Confidence            8999999999999998877   5999999999999999774 568999999999999999998876 6888999999999


Q ss_pred             cCCCCCccCcccc---------cCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEE
Q psy1672         131 ARNPISKIEKGAF---------QFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIE  201 (600)
Q Consensus       131 s~N~i~~l~~~~~---------~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  201 (600)
                      ++|.+....+..+         ..+++|+.|+|++|.++.++ ..+..+++|+.|+|++|.+..++. .+..+++|+.|+
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~  235 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELD  235 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEE
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEE
Confidence            9976555444444         34899999999999999774 568899999999999999999875 588899999999


Q ss_pred             ccCCcCcc
Q psy1672         202 LHDNPWVC  209 (600)
Q Consensus       202 l~~N~~~C  209 (600)
                      +.+|.+..
T Consensus       236 Ls~n~~~~  243 (328)
T 4fcg_A          236 LRGCTALR  243 (328)
T ss_dssp             CTTCTTCC
T ss_pred             CcCCcchh
Confidence            99987643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.65  E-value=4.7e-16  Score=167.83  Aligned_cols=153  Identities=23%  Similarity=0.270  Sum_probs=142.5

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      ...++.+++.++.+|....     .+|+.|+|++|+|+.+.+..|.++++|++|+|++|.|+.+++..|..+++|++|+|
T Consensus        56 ~~~v~c~~~~l~~iP~~~~-----~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP-----SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC-----TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCCcCccCCCCC-----CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            5678999999999997653     68999999999999999999999999999999999999999889999999999999


Q ss_pred             cCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCC-CcCCCCCcccccccccccEEEccCCcCc
Q psy1672         131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNG-NRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       131 s~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      ++|.++.+++..|..+++|+.|+|++|.|..+++..|..+++|+.|+|++ |.+..++...|..+.+|+.|++++|.+.
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~  209 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK  209 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence            99999999999999999999999999999999998999999999999998 6788888888999999999999999865

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.65  E-value=2.2e-16  Score=161.98  Aligned_cols=195  Identities=15%  Similarity=0.154  Sum_probs=115.9

Q ss_pred             cCCCCCCC---CeecccCC--------------ceEEEccCCCCCcc---------CCCCCCCCceEEEeeCCCCCC--C
Q psy1672          13 SVSSCPST---CICKWKGG--------------KQWMECRDKFLITI---------PEAPESELTQVLDMSGNNLQI--L   64 (600)
Q Consensus        13 ~~~~Cp~~---C~C~~~~~--------------~~~v~C~~~~L~~i---------p~~~~~~~l~~L~Ls~n~L~~--l   64 (600)
                      +..+|+..   |.|.....              ...+.|...+|+.+         |..++.. ++.|+|++|.+..  +
T Consensus         2 ~~~~C~~~~~~c~c~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l~~p~~~~~~-L~~L~L~~n~l~~~~~   80 (312)
T 1wwl_A            2 DPEPCELDEESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDI-IKSLSLKRLTVRAARI   80 (312)
T ss_dssp             ---CCCEETTEECCBCCSSSCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTTCCCHHHHHH-HHHCCCCEEEEEEEEC
T ss_pred             CCcccccccccccccccccccchHHHhhhhccccEEEEccCCCceeEeecccccccHHHHHHH-HhhcccccccccCCCc
Confidence            34578744   88875541              12456665556655         6544443 6667777776643  3


Q ss_pred             Chhhh----cccCCCCccEEEeecccCcccCcccc--CCCCCccEEEccCCCCCCCCccccCCC-----CCCCEEEccCC
Q psy1672          65 PKEAF----RRAGLLNLQKLFLARCHIGQIDSGAL--DGLTNLIEIDLSDNLLTSIPSLTFQSV-----RFLRDLNLARN  133 (600)
Q Consensus        65 ~~~~f----~~~~l~~L~~L~L~~n~l~~i~~~~f--~~l~~L~~L~Ls~N~l~~l~~~~f~~l-----~~L~~L~Ls~N  133 (600)
                      +...+    ...++.+|++|+|++|+++...+..+  ..+++|++|+|++|.|+.++ ..|..+     ++|++|+|++|
T Consensus        81 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N  159 (312)
T 1wwl_A           81 PSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQA  159 (312)
T ss_dssp             BHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESC
T ss_pred             CHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCC
Confidence            33322    01136677777777777765434433  66777777777777777663 345444     66777777777


Q ss_pred             CCCccCcccccCCCCcceeeCCCCcCcccC--hhh--hcCCCCCCEEEcCCCcCCCCC---cccccccccccEEEccCCc
Q psy1672         134 PISKIEKGAFQFVPGLVKLDMSESRLEHIS--PEA--FTGAKSLESIKLNGNRLSHFP---VRSVEPLLKLMMIELHDNP  206 (600)
Q Consensus       134 ~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~--~~~--~~~l~~L~~L~Ls~N~l~~l~---~~~~~~l~~L~~L~l~~N~  206 (600)
                      .++.+.+..|..+++|+.|+|++|++....  +..  +..+++|+.|+|++|.++.++   ...+..+++|+.|++++|.
T Consensus       160 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~  239 (312)
T 1wwl_A          160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS  239 (312)
T ss_dssp             SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred             CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence            777776666777777777777777754421  112  256677777777777776432   2333455677777777776


Q ss_pred             Ccc
Q psy1672         207 WVC  209 (600)
Q Consensus       207 ~~C  209 (600)
                      +.-
T Consensus       240 l~~  242 (312)
T 1wwl_A          240 LRD  242 (312)
T ss_dssp             CCS
T ss_pred             CCc
Confidence            543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.64  E-value=1.2e-15  Score=142.80  Aligned_cols=119  Identities=29%  Similarity=0.502  Sum_probs=100.7

Q ss_pred             cEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCC
Q psy1672         102 IEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGN  181 (600)
Q Consensus       102 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N  181 (600)
                      +.+++++|.|+.+|...+   .+|+.|+|++|.|+.+.+..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            577888888887776432   56888888888888887777888888888888888888888777888899999999999


Q ss_pred             cCCCCCcccccccccccEEEccCCcCccccc-cccchhhhccc
Q psy1672         182 RLSHFPVRSVEPLLKLMMIELHDNPWVCDCN-MRSIKMWLADK  223 (600)
Q Consensus       182 ~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~-l~~l~~w~~~~  223 (600)
                      +|+.++...|..+++|+.|++.+|+|.|+|. +.++..|+...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~  134 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADH  134 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhc
Confidence            9999988778899999999999999999996 88899998743

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.63  E-value=8.3e-16  Score=168.72  Aligned_cols=155  Identities=21%  Similarity=0.220  Sum_probs=136.6

Q ss_pred             eEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCC
Q psy1672          30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN  109 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N  109 (600)
                      +.++|.+.+++.+|..++.. +++|+|++|.++.+++..|.  ++.+|++|+|++|+++.+.+.+|.++++|++|+|++|
T Consensus         3 ~~l~ls~n~l~~ip~~~~~~-L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLSQK-TTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCCSCCTT-CSEEECCSSCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccccccccccc-ccEEECCCCcccccChhhcc--ccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            57999999999999988755 99999999999999988887  8999999999999999998889999999999999999


Q ss_pred             CCCCCCccccCCCCCCCEEEccCCCCCccC-cccccCCCCcceeeCCCCcCcccChhhhcCCCCC--CEEEcCCCcC--C
Q psy1672         110 LLTSIPSLTFQSVRFLRDLNLARNPISKIE-KGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSL--ESIKLNGNRL--S  184 (600)
Q Consensus       110 ~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~-~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L--~~L~Ls~N~l--~  184 (600)
                      .|+.++..   .+++|++|+|++|.++.+. +..|..+++|+.|++++|.+..   ..+..+.+|  +.|++++|.+  .
T Consensus        80 ~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             ceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            99998875   7899999999999999863 5789999999999999999986   356677788  9999999998  4


Q ss_pred             CCCcccccc
Q psy1672         185 HFPVRSVEP  193 (600)
Q Consensus       185 ~l~~~~~~~  193 (600)
                      ...+..+..
T Consensus       154 ~~~~~~l~~  162 (520)
T 2z7x_B          154 KEDPEGLQD  162 (520)
T ss_dssp             SCCTTTTTT
T ss_pred             ccccccccc
Confidence            444444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.63  E-value=4.8e-16  Score=159.39  Aligned_cols=175  Identities=19%  Similarity=0.121  Sum_probs=134.5

Q ss_pred             ceEEEccCCCCC-ccCCCC---CCCCceEEEeeCCCCCCCChhhhcccCC-----CCccEEEeecccCcccCccccCCCC
Q psy1672          29 KQWMECRDKFLI-TIPEAP---ESELTQVLDMSGNNLQILPKEAFRRAGL-----LNLQKLFLARCHIGQIDSGALDGLT   99 (600)
Q Consensus        29 ~~~v~C~~~~L~-~ip~~~---~~~~l~~L~Ls~n~L~~l~~~~f~~~~l-----~~L~~L~L~~n~l~~i~~~~f~~l~   99 (600)
                      -+.++..+..++ .+|..+   ....+++|+|++|.++.++. .+.  .+     ++|++|+|++|++..+.+..|..++
T Consensus        97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~--~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA-WLA--ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSS-HHH--HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhH-HHH--HHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            345666666776 466543   23449999999999998854 333  34     8999999999999999888899999


Q ss_pred             CccEEEccCCCCCCC---C-ccccCCCCCCCEEEccCCCCCcc---CcccccCCCCcceeeCCCCcCcccCh-hhhcCCC
Q psy1672         100 NLIEIDLSDNLLTSI---P-SLTFQSVRFLRDLNLARNPISKI---EKGAFQFVPGLVKLDMSESRLEHISP-EAFTGAK  171 (600)
Q Consensus       100 ~L~~L~Ls~N~l~~l---~-~~~f~~l~~L~~L~Ls~N~i~~l---~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~  171 (600)
                      +|++|+|++|.+...   + ...|..+++|++|+|++|.++.+   ....+..+++|+.|+|++|++....+ ..+..++
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  253 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS  253 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence            999999999987642   2 22347788999999999998843   33455678899999999999988653 4566688


Q ss_pred             CCCEEEcCCCcCCCCCcccccccccccEEEccCCcCcc
Q psy1672         172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC  209 (600)
Q Consensus       172 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C  209 (600)
                      +|+.|+|++|.|+.++...+   ++|+.|++++|.+.-
T Consensus       254 ~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~  288 (312)
T 1wwl_A          254 QLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDR  288 (312)
T ss_dssp             TCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCS
T ss_pred             CCCEEECCCCccChhhhhcc---CCceEEECCCCCCCC
Confidence            99999999999998875443   688899999988653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=2.9e-16  Score=171.22  Aligned_cols=155  Identities=21%  Similarity=0.254  Sum_probs=126.2

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccC-CCCCCCEEE
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQ-SVRFLRDLN  129 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~-~l~~L~~L~  129 (600)
                      +++|++++|.|..++..     .+++|+.|+|++|.++.+.+..|..+++|++|+|++|.|+.+.+..|. .+++|+.|+
T Consensus       101 L~~L~L~~N~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~  175 (487)
T 3oja_A          101 IETLHAANNNISRVSCS-----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (487)
T ss_dssp             CCEEECCSSCCCCEEEC-----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             cCEEECcCCcCCCCCcc-----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence            55555555555555433     357899999999999988888888999999999999999987665664 688999999


Q ss_pred             ccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCcc
Q psy1672         130 LARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC  209 (600)
Q Consensus       130 Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C  209 (600)
                      |++|.++.++.  +..+++|+.|+|++|.|+.+++. +..+++|+.|+|++|.|..++. .+..+++|+.|++.+|++.|
T Consensus       176 Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             CTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCBCH
T ss_pred             cCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-hhccCCCCCEEEcCCCCCcC
Confidence            99999988844  34588999999999999998765 7889999999999999998875 47778899999999999998


Q ss_pred             ccccc
Q psy1672         210 DCNMR  214 (600)
Q Consensus       210 ~C~l~  214 (600)
                      +|-..
T Consensus       252 ~~~~~  256 (487)
T 3oja_A          252 GTLRD  256 (487)
T ss_dssp             HHHHH
T ss_pred             cchHH
Confidence            76543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.63  E-value=2.2e-15  Score=151.42  Aligned_cols=152  Identities=22%  Similarity=0.265  Sum_probs=139.0

Q ss_pred             eEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEcc
Q psy1672          52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLA  131 (600)
Q Consensus        52 ~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls  131 (600)
                      ..++..+..+..+|...     ..+|+.|+|++|+++.+.+..|.++++|++|+|++|.++.++...|..+++|++|+|+
T Consensus        10 ~~~~c~~~~l~~ip~~l-----~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~   84 (276)
T 2z62_A           10 ITYQCMELNFYKIPDNL-----PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT   84 (276)
T ss_dssp             TEEECTTSCCSSCCSSS-----CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             ceEEecCCCccccCCCC-----CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC
Confidence            35677888899998754     3589999999999999998889999999999999999999998889999999999999


Q ss_pred             CCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCC-cccccccccccEEEccCCcCc
Q psy1672         132 RNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP-VRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       132 ~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      +|.++.+.+..|..+++|+.|++++|.+..+.+..+..+++|+.|+|++|.+..+. +..+..+++|+.|++.+|.+.
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A           85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            99999998888999999999999999999998878999999999999999999865 567889999999999999865

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.63  E-value=1.4e-15  Score=169.59  Aligned_cols=165  Identities=22%  Similarity=0.326  Sum_probs=136.0

Q ss_pred             eEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCC
Q psy1672          30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN  109 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N  109 (600)
                      +.+++.+..+..++.......|+.|+|++|.|..++.  +.  .+.+|+.|+|++|.|..++  .|..+++|++|+|++|
T Consensus        46 ~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N  119 (605)
T 1m9s_A           46 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LT--NLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHN  119 (605)
T ss_dssp             CCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTS
T ss_pred             CEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hc--cCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCC
Confidence            4567777778777765444558999999999988876  43  7889999999999988875  4888999999999999


Q ss_pred             CCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcc
Q psy1672         110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVR  189 (600)
Q Consensus       110 ~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  189 (600)
                      .|+.++  .+..+++|+.|+|++|.++.+  ..|..+++|+.|+|++|.|..+.+  +..+++|+.|+|++|.|..++  
T Consensus       120 ~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--  191 (605)
T 1m9s_A          120 GISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--  191 (605)
T ss_dssp             CCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--
T ss_pred             CCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh--
Confidence            998874  377888999999999998887  467888999999999999988865  788899999999999998874  


Q ss_pred             cccccccccEEEccCCcCc
Q psy1672         190 SVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       190 ~~~~l~~L~~L~l~~N~~~  208 (600)
                      .+..+++|+.|+|.+|++.
T Consensus       192 ~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          192 ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             GGTTCTTCSEEECCSEEEE
T ss_pred             HHccCCCCCEEEccCCcCc
Confidence            5778889999999988754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.61  E-value=3e-15  Score=162.48  Aligned_cols=153  Identities=21%  Similarity=0.312  Sum_probs=142.6

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      .+.++.+++.++.+|...     ..+|+.|+|++|+|+.+.+..|.++++|++|+|++|.|+.+.+..|..+++|++|+|
T Consensus        13 ~~~v~c~~~~l~~ip~~~-----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L   87 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGI-----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL   87 (477)
T ss_dssp             TTEEECCSCCCSSCCSCC-----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcCcCCCCC-----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEEC
Confidence            357899999999999765     358999999999999999999999999999999999999998889999999999999


Q ss_pred             cCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       131 s~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      ++|.++.++...|.++++|+.|+|++|.+..+.+..|..+++|+.|+|++|.+..+....|..+++|+.|++.+|.+.
T Consensus        88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A           88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred             CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence            999999998888999999999999999999998999999999999999999999998888999999999999999765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.60  E-value=2e-15  Score=157.33  Aligned_cols=152  Identities=18%  Similarity=0.249  Sum_probs=139.6

Q ss_pred             eEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEcc
Q psy1672          52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLA  131 (600)
Q Consensus        52 ~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls  131 (600)
                      ...+++++.++.+|...+     .+|+.|+|++|+++.+++..|.++++|++|+|++|.|+.+++..|..+++|++|+|+
T Consensus        34 ~~c~~~~~~l~~iP~~~~-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (353)
T 2z80_A           34 GICKGSSGSLNSIPSGLT-----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS  108 (353)
T ss_dssp             SEEECCSTTCSSCCTTCC-----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             eEeeCCCCCccccccccc-----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence            347889999999998654     489999999999999998889999999999999999999988889999999999999


Q ss_pred             CCCCCccCcccccCCCCcceeeCCCCcCcccCh-hhhcCCCCCCEEEcCCC-cCCCCCcccccccccccEEEccCCcCc
Q psy1672         132 RNPISKIEKGAFQFVPGLVKLDMSESRLEHISP-EAFTGAKSLESIKLNGN-RLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       132 ~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      +|.++.++...|..+++|+.|+|++|++..++. ..+..+++|+.|++++| .+..++...|..+++|+.|++.+|.+.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            999999988889999999999999999999977 67899999999999999 588888888899999999999999764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.60  E-value=1e-14  Score=164.28  Aligned_cols=153  Identities=22%  Similarity=0.281  Sum_probs=83.8

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCC-------CccEEEccCCCCCCCCcccc-CCC
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLT-------NLIEIDLSDNLLTSIPSLTF-QSV  122 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~-------~L~~L~Ls~N~l~~l~~~~f-~~l  122 (600)
                      +++|+|++|.|+.++...|.  .+++|+.|+|++|.++.++...|..+.       +|++|+|++|.|+.++...+ ..+
T Consensus       435 L~~L~Ls~N~l~~lp~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l  512 (636)
T 4eco_A          435 VSSINLSNNQISKFPKELFS--TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL  512 (636)
T ss_dssp             EEEEECCSSCCCSCCTHHHH--TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTC
T ss_pred             CCEEECcCCccCcCCHHHHc--cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccC
Confidence            55555555555555555554  455666666666665555544444332       56666666666665554322 255


Q ss_pred             CCCCEEEccCCCCCccCcccccCCCCcceeeC------CCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCccccccccc
Q psy1672         123 RFLRDLNLARNPISKIEKGAFQFVPGLVKLDM------SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK  196 (600)
Q Consensus       123 ~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~L------s~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  196 (600)
                      ++|+.|+|++|.++.+ +..+..+++|+.|+|      ++|++....+..+..+++|+.|+|++|.+..++...+   ++
T Consensus       513 ~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~---~~  588 (636)
T 4eco_A          513 PYLVGIDLSYNSFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT---PN  588 (636)
T ss_dssp             TTCCEEECCSSCCSSC-CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---TT
T ss_pred             CCcCEEECCCCCCCCc-ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh---Cc
Confidence            5666666666666554 333445566666665      2344444445555556666666666666655554322   45


Q ss_pred             ccEEEccCCcCcc
Q psy1672         197 LMMIELHDNPWVC  209 (600)
Q Consensus       197 L~~L~l~~N~~~C  209 (600)
                      |+.|++++|++.|
T Consensus       589 L~~L~Ls~N~l~~  601 (636)
T 4eco_A          589 ISVLDIKDNPNIS  601 (636)
T ss_dssp             CCEEECCSCTTCE
T ss_pred             CCEEECcCCCCcc
Confidence            5666666666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.60  E-value=6.6e-15  Score=152.76  Aligned_cols=169  Identities=18%  Similarity=0.242  Sum_probs=135.9

Q ss_pred             eEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCC
Q psy1672          30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN  109 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N  109 (600)
                      +.++..+..+..++.......++.|++++|.+..++.  +.  .+.+|+.|++++|.+..+.+  +..+++|++|+|++|
T Consensus       158 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LA--SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN  231 (347)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GG--GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             cEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--cc--CCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence            4667777777776654334458999999999988776  33  68889999999988887755  778888999999999


Q ss_pred             CCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcc
Q psy1672         110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVR  189 (600)
Q Consensus       110 ~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  189 (600)
                      .++.++.  +..+++|++|++++|.++.+  ..+..+++|+.|++++|.+..+  ..+..+++|+.|++++|.+......
T Consensus       232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          232 KITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             ccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence            8888776  77888899999998888876  3577888888999988888887  4577888889999998888888777


Q ss_pred             cccccccccEEEccCCcCccc
Q psy1672         190 SVEPLLKLMMIELHDNPWVCD  210 (600)
Q Consensus       190 ~~~~l~~L~~L~l~~N~~~C~  210 (600)
                      .+..+++|+.|++.+|++...
T Consensus       306 ~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          306 VIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             HHHTCTTCSEEECCSSSCCCC
T ss_pred             HhhccccCCEEEccCCccccc
Confidence            788888888888888887654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.60  E-value=2.4e-15  Score=154.24  Aligned_cols=191  Identities=19%  Similarity=0.212  Sum_probs=158.5

Q ss_pred             CCCC---CCCeeccc---CCceEEEccCCCCC---ccCCCCC-CCCceEEEeeC-CCCCCCChhhhcccCCCCccEEEee
Q psy1672          15 SSCP---STCICKWK---GGKQWMECRDKFLI---TIPEAPE-SELTQVLDMSG-NNLQILPKEAFRRAGLLNLQKLFLA   83 (600)
Q Consensus        15 ~~Cp---~~C~C~~~---~~~~~v~C~~~~L~---~ip~~~~-~~~l~~L~Ls~-n~L~~l~~~~f~~~~l~~L~~L~L~   83 (600)
                      ..|-   ..-.|...   +....++..+..+.   .+|..+. ...+++|+|++ |.+....+..|.  .+++|++|+|+
T Consensus        32 ~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~--~l~~L~~L~Ls  109 (313)
T 1ogq_A           32 DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA--KLTQLHYLYIT  109 (313)
T ss_dssp             CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG--GCTTCSEEEEE
T ss_pred             CCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh--cCCCCCEEECc
Confidence            3564   45566543   34567888888887   4665433 24499999995 888743334454  79999999999


Q ss_pred             cccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCC-CcceeeCCCCcCccc
Q psy1672          84 RCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVP-GLVKLDMSESRLEHI  162 (600)
Q Consensus        84 ~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~-~L~~L~Ls~n~l~~i  162 (600)
                      +|.++...+..|..+++|++|+|++|.|+...+..|..+++|++|+|++|.++...+..|..+. +|+.|++++|++...
T Consensus       110 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~  189 (313)
T 1ogq_A          110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             EECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             CCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence            9999977777899999999999999999966666899999999999999999966677788887 999999999999987


Q ss_pred             ChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         163 SPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       163 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      .+..+..+. |+.|+|++|.+....+..|..+++|+.|++.+|.+.
T Consensus       190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence            788888887 999999999999888888999999999999999865

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.59  E-value=9.4e-15  Score=148.29  Aligned_cols=145  Identities=23%  Similarity=0.354  Sum_probs=131.9

Q ss_pred             CceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEE
Q psy1672          50 LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLN  129 (600)
Q Consensus        50 ~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  129 (600)
                      .++.|++++|.+..++.  +.  .+.+|+.|+|++|+++.+.+  +..+++|++|+|++|.++.++.  +..+++|++|+
T Consensus        47 ~L~~L~l~~~~i~~~~~--~~--~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~  118 (291)
T 1h6t_A           47 SIDQIIANNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLS  118 (291)
T ss_dssp             TCCEEECTTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEE
T ss_pred             cccEEEccCCCcccChh--Hh--cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCEEE
Confidence            38999999999999864  43  69999999999999999876  8999999999999999999765  88999999999


Q ss_pred             ccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         130 LARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       130 Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      |++|.++.+  ..+..+++|+.|++++|++..+  ..+..+++|+.|+|++|.+..++.  +..+++|+.|++++|.+.
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            999999987  4578899999999999999998  578899999999999999999875  888999999999999865

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=3.8e-15  Score=138.07  Aligned_cols=133  Identities=17%  Similarity=0.189  Sum_probs=109.6

Q ss_pred             ceEEEeeCCCCC--CCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEE
Q psy1672          51 TQVLDMSGNNLQ--ILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDL  128 (600)
Q Consensus        51 l~~L~Ls~n~L~--~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L  128 (600)
                      +++|++++|.++  .++.. +.  .+++|+.|+|++|.++.+  ..|..+++|++|+|++|.++...+..+..+++|++|
T Consensus        26 L~~L~l~~n~l~~~~i~~~-~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           26 VRELVLDNCKSNDGKIEGL-TA--EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CSEEECCSCBCBTTBCSSC-CG--GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CCEEECCCCCCChhhHHHH-HH--hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            899999999988  77655 33  688999999999988888  568888999999999999988555567678889999


Q ss_pred             EccCCCCCccCc-ccccCCCCcceeeCCCCcCcccCh---hhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         129 NLARNPISKIEK-GAFQFVPGLVKLDMSESRLEHISP---EAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       129 ~Ls~N~i~~l~~-~~~~~l~~L~~L~Ls~n~l~~i~~---~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      +|++|.++.++. ..|..+++|+.|++++|.+..+++   ..+..+++|+.|++++|.+..++.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            999998888753 567888889999999998888866   578888889999988888877764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.58  E-value=2e-14  Score=158.86  Aligned_cols=153  Identities=21%  Similarity=0.326  Sum_probs=118.0

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -..+++.+.+++.+|..+... ++.|+|++|.|+.|| .     .+.+|+.|+|++|.|+.++.  |..  +|++|+|++
T Consensus        61 L~~L~Ls~n~L~~lp~~l~~~-L~~L~Ls~N~l~~ip-~-----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           61 FSELQLNRLNLSSLPDNLPPQ-ITVLEITQNALISLP-E-----LPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN  129 (571)
T ss_dssp             CSEEECCSSCCSCCCSCCCTT-CSEEECCSSCCSCCC-C-----CCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred             ccEEEeCCCCCCccCHhHcCC-CCEEECcCCCCcccc-c-----ccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence            578999999999999877655 999999999999988 2     47899999999999988765  554  888888988


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      |.|+.++.    .+++|+.|+|++|.|+.++.    .+++|+.|+|++|.|+.++.  |.  ++|+.|+|++|.|+.++.
T Consensus       130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          130 NQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             SCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred             CcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh
Confidence            88888776    46778888888888887654    45778888888888877654  44  777777777777777765


Q ss_pred             ccccccccc-------cEEEccCCcCc
Q psy1672         189 RSVEPLLKL-------MMIELHDNPWV  208 (600)
Q Consensus       189 ~~~~~l~~L-------~~L~l~~N~~~  208 (600)
                        +..  +|       +.|++.+|.+.
T Consensus       198 --~~~--~L~~~~~~L~~L~Ls~N~l~  220 (571)
T 3cvr_A          198 --VPV--RNHHSEETEIFFRCRENRIT  220 (571)
T ss_dssp             --CC----------CCEEEECCSSCCC
T ss_pred             --HHH--hhhcccccceEEecCCCcce
Confidence              332  55       77777777655

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.57  E-value=2.2e-14  Score=158.39  Aligned_cols=156  Identities=24%  Similarity=0.293  Sum_probs=124.7

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -+.++..++.++.+| ..... +++|+|++|.|+.||.  +.  .  +|+.|+|++|.|+.++.    .+++|++|+|++
T Consensus        82 L~~L~Ls~N~l~~ip-~~l~~-L~~L~Ls~N~l~~ip~--l~--~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~  149 (571)
T 3cvr_A           82 ITVLEITQNALISLP-ELPAS-LEYLDACDNRLSTLPE--LP--A--SLKHLDVDNNQLTMLPE----LPALLEYINADN  149 (571)
T ss_dssp             CSEEECCSSCCSCCC-CCCTT-CCEEECCSSCCSCCCC--CC--T--TCCEEECCSSCCSCCCC----CCTTCCEEECCS
T ss_pred             CCEEECcCCCCcccc-cccCC-CCEEEccCCCCCCcch--hh--c--CCCEEECCCCcCCCCCC----cCccccEEeCCC
Confidence            467888888888888 44333 8999999999998887  42  2  89999999999988765    578899999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCC-------CEEEcCCC
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSL-------ESIKLNGN  181 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L-------~~L~Ls~N  181 (600)
                      |.|+.++.    .+++|+.|+|++|.|+.++.  |.  ++|+.|+|++|+|+.++.  |..  +|       +.|+|++|
T Consensus       150 N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N  217 (571)
T 3cvr_A          150 NQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCREN  217 (571)
T ss_dssp             SCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSS
T ss_pred             CccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCC
Confidence            99998876    46789999999999988765  54  889999999999988865  443  66       89999999


Q ss_pred             cCCCCCcccccccccccEEEccCCcCcc
Q psy1672         182 RLSHFPVRSVEPLLKLMMIELHDNPWVC  209 (600)
Q Consensus       182 ~l~~l~~~~~~~l~~L~~L~l~~N~~~C  209 (600)
                      .|+.++... ..+++|+.|++.+|++.+
T Consensus       218 ~l~~lp~~l-~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          218 RITHIPENI-LSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             CCCCCCGGG-GGSCTTEEEECCSSSCCH
T ss_pred             cceecCHHH-hcCCCCCEEEeeCCcCCC
Confidence            999888644 448899999999998765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.57  E-value=3e-15  Score=153.27  Aligned_cols=174  Identities=17%  Similarity=0.126  Sum_probs=134.2

Q ss_pred             eEEEccCCCCCcc-CCCC---CCCCceEEEeeCCCCCCCCh----hhhcccCCCCccEEEeecccCcccCccccCCCCCc
Q psy1672          30 QWMECRDKFLITI-PEAP---ESELTQVLDMSGNNLQILPK----EAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNL  101 (600)
Q Consensus        30 ~~v~C~~~~L~~i-p~~~---~~~~l~~L~Ls~n~L~~l~~----~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L  101 (600)
                      +.++..+..+... |..+   ....+++|+|++|.+.....    ..+.  .+++|++|+|++|.+..+.+..|..+++|
T Consensus        94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW--LKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT--BCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh--hccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            3455556666543 3332   23349999999999985322    2232  68999999999999999998889999999


Q ss_pred             cEEEccCCCCCC---CC-ccccCCCCCCCEEEccCCCCCccCcc---cccCCCCcceeeCCCCcCcccChhhhcCC---C
Q psy1672         102 IEIDLSDNLLTS---IP-SLTFQSVRFLRDLNLARNPISKIEKG---AFQFVPGLVKLDMSESRLEHISPEAFTGA---K  171 (600)
Q Consensus       102 ~~L~Ls~N~l~~---l~-~~~f~~l~~L~~L~Ls~N~i~~l~~~---~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l---~  171 (600)
                      ++|+|++|.+..   ++ ...+..+++|++|+|++|.++.+...   .+..+++|+.|+|++|+|..+.+..+..+   +
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            999999999764   32 22346788999999999999866432   35678999999999999999866666665   6


Q ss_pred             CCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       172 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      +|+.|+|++|+|+.++...+   ++|+.|++++|.+.
T Consensus       252 ~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          252 ALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLN  285 (310)
T ss_dssp             TCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCC
T ss_pred             cCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCC
Confidence            99999999999998875443   68999999999876

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.57  E-value=1.6e-14  Score=137.71  Aligned_cols=149  Identities=14%  Similarity=0.179  Sum_probs=126.2

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -+.+++.+..+..+|.......+++|++++|.++.++  .+.  .+++|++|+|++|.++...+..|..+++|++|+|++
T Consensus        46 L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           46 LTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             CCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGT--TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             ccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhh--cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            3578888888988885444456999999999888775  343  799999999999999986667799999999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCC-CCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCC
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNP-ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSH  185 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~-i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~  185 (600)
                      |.++......|..+++|++|+|++|. ++.++  .+..+++|+.|++++|.+..+.  .+..+++|+.|++++|++..
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             CccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            99998666678999999999999998 88874  5889999999999999999985  68889999999999998764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.57  E-value=2.1e-14  Score=148.93  Aligned_cols=165  Identities=18%  Similarity=0.237  Sum_probs=138.7

Q ss_pred             eEEEccCC-CCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          30 QWMECRDK-FLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        30 ~~v~C~~~-~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      +.++..+. .+..++.......+++|++++|.+..++.  +.  .+++|+.|++++|.+..+.+  +..+++|++|++++
T Consensus       135 ~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~  208 (347)
T 4fmz_A          135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IA--NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYV  208 (347)
T ss_dssp             CEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GG--GCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             eEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hc--cCCCCCEEEccCCccccccc--ccCCCccceeeccc
Confidence            45666555 44444443344459999999999998876  43  79999999999999988865  88999999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      |.++.++.  +..+++|++|++++|.++.+.+  +..+++|+.|++++|.+..+  ..+..+++|+.|++++|.+..++ 
T Consensus       209 n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-  281 (347)
T 4fmz_A          209 NQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS-  281 (347)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-
T ss_pred             CCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh-
Confidence            99998876  7788999999999999998865  88899999999999999987  46888999999999999999984 


Q ss_pred             ccccccccccEEEccCCcCc
Q psy1672         189 RSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       189 ~~~~~l~~L~~L~l~~N~~~  208 (600)
                       .+..+++|+.|++.+|.+.
T Consensus       282 -~~~~l~~L~~L~L~~n~l~  300 (347)
T 4fmz_A          282 -VLNNLSQLNSLFLNNNQLG  300 (347)
T ss_dssp             -GGGGCTTCSEEECCSSCCC
T ss_pred             -hhcCCCCCCEEECcCCcCC
Confidence             5788899999999999864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.57  E-value=1.4e-14  Score=161.81  Aligned_cols=165  Identities=21%  Similarity=0.266  Sum_probs=131.6

Q ss_pred             CCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCcccc
Q psy1672          16 SCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGAL   95 (600)
Q Consensus        16 ~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f   95 (600)
                      .||..|.|.... ...++|.+.+++.+|..++.. ++.|+|++|.|+.|+.      .+.+|+.|+|++|+|+.++.   
T Consensus        30 ~~~~~~~c~~~~-l~~L~ls~n~L~~lp~~l~~~-L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~---   98 (622)
T 3g06_A           30 VVQKMRACLNNG-NAVLNVGESGLTTLPDCLPAH-ITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV---   98 (622)
T ss_dssp             HHHHHHHHHHHC-CCEEECCSSCCSCCCSCCCTT-CSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCCCC---
T ss_pred             cCcccccccCCC-CcEEEecCCCcCccChhhCCC-CcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcCCC---
Confidence            466678887653 578999999999999988755 9999999999999986      36899999999999998875   


Q ss_pred             CCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCE
Q psy1672          96 DGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLES  175 (600)
Q Consensus        96 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~  175 (600)
                       .+++|++|+|++|.|+.++.    .+.+|+.|+|++|.++.++..    +++|+.|+|++|.+..++.    .+.+|+.
T Consensus        99 -~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~  165 (622)
T 3g06_A           99 -LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCK  165 (622)
T ss_dssp             -CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCE
T ss_pred             -CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCE
Confidence             67899999999999999877    467799999999998887542    4788899999998887743    3456777


Q ss_pred             EEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         176 IKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       176 L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      |++++|.|+.++    ..+++|+.|++.+|.+.
T Consensus       166 L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~  194 (622)
T 3g06_A          166 LWAYNNQLTSLP----MLPSGLQELSVSDNQLA  194 (622)
T ss_dssp             EECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred             EECCCCCCCCCc----ccCCCCcEEECCCCCCC
Confidence            777777777765    23456677777776654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.56  E-value=6.1e-15  Score=150.39  Aligned_cols=179  Identities=19%  Similarity=0.216  Sum_probs=141.8

Q ss_pred             eEEEccCCCCCccCC---CCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcc-cCccccCCCCCccEEE
Q psy1672          30 QWMECRDKFLITIPE---APESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ-IDSGALDGLTNLIEID  105 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~---~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~-i~~~~f~~l~~L~~L~  105 (600)
                      +.++..+..+..++.   ......+++|++++|.+..+....|.  .+.+|+.|+|++|.+.. +.+..|..+++|++|+
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT--TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc--cCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence            345555566666553   22223489999999998877777776  78999999999999876 4566789999999999


Q ss_pred             ccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCC-CCCEEEcCCCcCC
Q psy1672         106 LSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK-SLESIKLNGNRLS  184 (600)
Q Consensus       106 Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~-~L~~L~Ls~N~l~  184 (600)
                      |++|.|+.+++..|..+++|+.|+|++|.++.+....|..+++|+.|+|++|.+..+.+..+..++ +|+.|+|++|.+.
T Consensus       182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            999999999888899999999999999999999888899999999999999999999888888884 9999999999997


Q ss_pred             CCCc-cc-ccccccccEEEccCCcCccc
Q psy1672         185 HFPV-RS-VEPLLKLMMIELHDNPWVCD  210 (600)
Q Consensus       185 ~l~~-~~-~~~l~~L~~L~l~~N~~~C~  210 (600)
                      .... .. ..-+..++.+.+..+.+.|.
T Consensus       262 ~~c~~~~~~~~l~~~~~~~~~~~~~~C~  289 (306)
T 2z66_A          262 CTCEHQSFLQWIKDQRQLLVEVERMECA  289 (306)
T ss_dssp             CSGGGHHHHHHHHHTGGGBSCGGGCBEE
T ss_pred             cccChHHHHHHHHhhhhhhccccccccC
Confidence            5421 11 12233444455566677774

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.56  E-value=6.2e-15  Score=150.89  Aligned_cols=156  Identities=14%  Similarity=0.020  Sum_probs=129.0

Q ss_pred             ceEEEeeCCCCCCCChhhh--cccCCCCccEEEeecccCcccCc----cccCCCCCccEEEccCCCCCCCCccccCCCCC
Q psy1672          51 TQVLDMSGNNLQILPKEAF--RRAGLLNLQKLFLARCHIGQIDS----GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRF  124 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f--~~~~l~~L~~L~L~~n~l~~i~~----~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~  124 (600)
                      +++|+|++|.+....+..+  .  .+.+|+.|+|++|.++...+    ..+..+++|++|+|++|.|+.+++..|..+++
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEA--TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSC--CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             eeEEEeeCCEeccchhhhhhhc--cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            9999999999986555444  4  79999999999999986432    44567999999999999999999889999999


Q ss_pred             CCEEEccCCCCCc---cCc-ccccCCCCcceeeCCCCcCcccChh---hhcCCCCCCEEEcCCCcCCCCCccccccc---
Q psy1672         125 LRDLNLARNPISK---IEK-GAFQFVPGLVKLDMSESRLEHISPE---AFTGAKSLESIKLNGNRLSHFPVRSVEPL---  194 (600)
Q Consensus       125 L~~L~Ls~N~i~~---l~~-~~~~~l~~L~~L~Ls~n~l~~i~~~---~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l---  194 (600)
                      |++|+|++|++..   +.. ..+..+++|+.|+|++|+++.++..   .+..+++|+.|+|++|.+..+.+..+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            9999999999764   222 2346789999999999999876432   35678999999999999999854455555   


Q ss_pred             ccccEEEccCCcCc
Q psy1672         195 LKLMMIELHDNPWV  208 (600)
Q Consensus       195 ~~L~~L~l~~N~~~  208 (600)
                      ++|+.|++++|.+.
T Consensus       251 ~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          251 SALNSLNLSFAGLE  264 (310)
T ss_dssp             TTCCCEECCSSCCC
T ss_pred             CcCCEEECCCCCCC
Confidence            69999999999876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.56  E-value=1.9e-14  Score=165.60  Aligned_cols=177  Identities=20%  Similarity=0.141  Sum_probs=132.0

Q ss_pred             eEEEccCCCCC-ccCCCCC-CCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEcc
Q psy1672          30 QWMECRDKFLI-TIPEAPE-SELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS  107 (600)
Q Consensus        30 ~~v~C~~~~L~-~ip~~~~-~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls  107 (600)
                      +.++..+..+. .+|..+. ...+++|+|++|.++...+..+.  .+++|+.|+|++|++....+..|..+++|++|+|+
T Consensus       445 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~  522 (768)
T 3rgz_A          445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS--NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS  522 (768)
T ss_dssp             CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             CEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh--cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence            45666666666 4454322 23488899999988854444454  68889999999888887777778888888888888


Q ss_pred             CCCCCCCCccccCCCCCCCEEEccCCCCCccCcc----------------------------------------------
Q psy1672         108 DNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKG----------------------------------------------  141 (600)
Q Consensus       108 ~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~----------------------------------------------  141 (600)
                      +|.++...+..+..+++|+.|+|++|.++...+.                                              
T Consensus       523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  602 (768)
T 3rgz_A          523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE  602 (768)
T ss_dssp             SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred             CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence            8888855555788888888888888877532221                                              


Q ss_pred             ------------------------cccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccc
Q psy1672         142 ------------------------AFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKL  197 (600)
Q Consensus       142 ------------------------~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  197 (600)
                                              .|..+++|+.|+|++|++.+..|..++.+++|+.|+|++|.++...+..+..++.|
T Consensus       603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L  682 (768)
T 3rgz_A          603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL  682 (768)
T ss_dssp             GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence                                    23345677888888888887777888888888888888888886666778888888


Q ss_pred             cEEEccCCcCc
Q psy1672         198 MMIELHDNPWV  208 (600)
Q Consensus       198 ~~L~l~~N~~~  208 (600)
                      +.|++++|.+.
T Consensus       683 ~~LdLs~N~l~  693 (768)
T 3rgz_A          683 NILDLSSNKLD  693 (768)
T ss_dssp             CEEECCSSCCE
T ss_pred             CEEECCCCccc
Confidence            88888888765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.55  E-value=1.4e-14  Score=166.71  Aligned_cols=161  Identities=19%  Similarity=0.153  Sum_probs=112.9

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      +++|++++|.++...+..+.  .+.+|+.|+|++|.++...+..|..+++|++|+|++|.++...+..|..+++|++|+|
T Consensus       396 L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          396 LQELYLQNNGFTGKIPPTLS--NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCEEECCSSEEEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             ccEEECCCCccccccCHHHh--cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence            66666666666633333333  5777777777777777666666777777777777777777555556777777777777


Q ss_pred             cCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCccc
Q psy1672         131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCD  210 (600)
Q Consensus       131 s~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~  210 (600)
                      ++|.++...+..|..+++|+.|+|++|++....+..++.+++|+.|+|++|.+....+..+..+++|+.|++.+|++.+.
T Consensus       474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~  553 (768)
T 3rgz_A          474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT  553 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred             cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence            77777766666677777777777777777766667777777777777777777755556677777777777777777665


Q ss_pred             ccc
Q psy1672         211 CNM  213 (600)
Q Consensus       211 C~l  213 (600)
                      +..
T Consensus       554 ip~  556 (768)
T 3rgz_A          554 IPA  556 (768)
T ss_dssp             CCG
T ss_pred             CCh
Confidence            443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.55  E-value=7e-14  Score=161.50  Aligned_cols=177  Identities=18%  Similarity=0.201  Sum_probs=97.3

Q ss_pred             eEEEccCCCCCccCCCCCC---CCceEEEeeCCCCCCCChhhh---cccCCCCccEEEeecccCcccCccccCCCCCccE
Q psy1672          30 QWMECRDKFLITIPEAPES---ELTQVLDMSGNNLQILPKEAF---RRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIE  103 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~---~~l~~L~Ls~n~L~~l~~~~f---~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~  103 (600)
                      +.++..++.+..+|..+..   ..++.|+|++|.+....+...   ....+.+|+.|+|++|.+..++...|..+++|++
T Consensus       622 ~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~  701 (876)
T 4ecn_A          622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST  701 (876)
T ss_dssp             CEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSE
T ss_pred             CEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCE
Confidence            4556666666666654322   126666666666654322111   0002346666666666666665555556666666


Q ss_pred             EEccCCCCCCCCccccCCCC-------CCCEEEccCCCCCccCcccc-cCCCCcceeeCCCCcCcccChhhhcCCCCCCE
Q psy1672         104 IDLSDNLLTSIPSLTFQSVR-------FLRDLNLARNPISKIEKGAF-QFVPGLVKLDMSESRLEHISPEAFTGAKSLES  175 (600)
Q Consensus       104 L~Ls~N~l~~l~~~~f~~l~-------~L~~L~Ls~N~i~~l~~~~~-~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~  175 (600)
                      |+|++|.|+.++...|....       +|+.|+|++|.++.++...+ ..+++|+.|+|++|+|..+ +..+..+++|+.
T Consensus       702 L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~  780 (876)
T 4ecn_A          702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKA  780 (876)
T ss_dssp             EECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCE
T ss_pred             EECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCE
Confidence            66666666666655444322       56666666666665543322 2566666666666666665 334555666666


Q ss_pred             EEcCC------CcCCCCCcccccccccccEEEccCCcC
Q psy1672         176 IKLNG------NRLSHFPVRSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       176 L~Ls~------N~l~~l~~~~~~~l~~L~~L~l~~N~~  207 (600)
                      |+|++      |.+....+..+..+++|+.|++++|.+
T Consensus       781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             EECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            66654      444444444555566666666666654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.55  E-value=2.8e-14  Score=138.61  Aligned_cols=109  Identities=28%  Similarity=0.437  Sum_probs=79.4

Q ss_pred             CccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcC
Q psy1672         100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLN  179 (600)
Q Consensus       100 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls  179 (600)
                      +|+.|+|++|.|+.+++..|..+++|+.|+|++|.++.+.+..|..+++|+.|+|++|.|+.+++..|.++++|+.|+|+
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  112 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN  112 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence            44555555555555555555555556666666666655555566666667777777777777766777788899999999


Q ss_pred             CCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         180 GNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       180 ~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      +|.|..++...|..+++|+.|++.+|.+.
T Consensus       113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B          113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence            99999998889999999999999999864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=3.8e-15  Score=162.32  Aligned_cols=177  Identities=15%  Similarity=0.189  Sum_probs=145.0

Q ss_pred             eEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccC-CCCCccEEEccC
Q psy1672          30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD-GLTNLIEIDLSD  108 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~-~l~~L~~L~Ls~  108 (600)
                      ..++..++.+..++...... ++.|+|++|.|+.+++..|.  .+.+|+.|+|++|.++.+.+..|. .+++|++|+|++
T Consensus       102 ~~L~L~~N~l~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          102 ETLHAANNNISRVSCSRGQG-KKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             CEEECCSSCCCCEEECCCSS-CEEEECCSSCCCSGGGBCGG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CEEECcCCcCCCCCccccCC-CCEEECCCCCCCCCCchhhc--CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            34566666666666544444 99999999999998877776  799999999999999998777776 799999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCC-CCC
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLS-HFP  187 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~  187 (600)
                      |.|+.++.  +..+++|+.|+|++|.++.+++. |..+++|+.|+|++|.|..++ ..+..+++|+.|+|++|.+. ...
T Consensus       179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~l~~N~l~c~~~  254 (487)
T 3oja_A          179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTL  254 (487)
T ss_dssp             SCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTCCBCHHHH
T ss_pred             Cccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccc-hhhccCCCCCEEEcCCCCCcCcch
Confidence            99999865  34589999999999999998765 888999999999999999985 45888999999999999998 222


Q ss_pred             cccccccccccEEEcc-------CCcCcccccc
Q psy1672         188 VRSVEPLLKLMMIELH-------DNPWVCDCNM  213 (600)
Q Consensus       188 ~~~~~~l~~L~~L~l~-------~N~~~C~C~l  213 (600)
                      +..+..++.|+.+++.       .+++.|.|..
T Consensus       255 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~  287 (487)
T 3oja_A          255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT  287 (487)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred             HHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence            3456667777777775       7777777643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.54  E-value=3.5e-15  Score=153.25  Aligned_cols=169  Identities=15%  Similarity=0.180  Sum_probs=143.5

Q ss_pred             eEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCcccc-CCCCCccEEEccC
Q psy1672          30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGAL-DGLTNLIEIDLSD  108 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f-~~l~~L~~L~Ls~  108 (600)
                      ..++..+..+..++...... +++|++++|.++.++...|.  .+.+|+.|+|++|.++.+.+..| ..+++|++|+|++
T Consensus       102 ~~L~l~~n~l~~~~~~~~~~-L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          102 ETLHAANNNISRVSCSRGQG-KKNIYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             CEEECCSSCCSEEEECCCSS-CEEEECCSSCCCSGGGBCTG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             CEEECCCCccCCcCccccCC-CCEEECCCCCCCCccchhhh--ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            46777888888887655554 99999999999999887776  79999999999999999877666 4789999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCC-CCC
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLS-HFP  187 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~  187 (600)
                      |.|+.++..  ..+++|++|+|++|.++.+++. |..+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|.+. ...
T Consensus       179 N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~-~~~~~l~~L~~L~l~~N~~~~~~~  254 (317)
T 3o53_A          179 NFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTL  254 (317)
T ss_dssp             SCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC-TTCCCCTTCCEEECTTCCCBHHHH
T ss_pred             CcCcccccc--cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchh-hHhhcCCCCCEEEccCCCccCcCH
Confidence            999998653  3489999999999999998665 888999999999999999985 46888999999999999998 444


Q ss_pred             cccccccccccEEEccCC
Q psy1672         188 VRSVEPLLKLMMIELHDN  205 (600)
Q Consensus       188 ~~~~~~l~~L~~L~l~~N  205 (600)
                      ...+..+++|+.+++.++
T Consensus       255 ~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          255 RDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             HHHHHTCHHHHHHHHHHH
T ss_pred             HHHHhccccceEEECCCc
Confidence            466777788888877643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.54  E-value=1.8e-14  Score=160.67  Aligned_cols=160  Identities=22%  Similarity=0.317  Sum_probs=137.8

Q ss_pred             CCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCC
Q psy1672          36 DKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIP  115 (600)
Q Consensus        36 ~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~  115 (600)
                      +..+..+........|+.|++++|.|..++.  +.  .+++|+.|+|++|.|..+.+  |..+++|++|+|++|.|+.++
T Consensus        30 ~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~  103 (605)
T 1m9s_A           30 KKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS  103 (605)
T ss_dssp             CSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GG--GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT
T ss_pred             CCCcccccchhcCCCCCEEECcCCCCCCChH--Hc--cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh
Confidence            3444444333223348999999999999874  43  79999999999999999876  899999999999999999987


Q ss_pred             ccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccc
Q psy1672         116 SLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL  195 (600)
Q Consensus       116 ~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  195 (600)
                        .|..+++|+.|+|++|.+..+  ..+..+++|+.|+|++|.|..+  ..+..+++|+.|+|++|.|..+++  +..++
T Consensus       104 --~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~  175 (605)
T 1m9s_A          104 --SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT  175 (605)
T ss_dssp             --TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred             --hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCC
Confidence              488999999999999999987  3488999999999999999998  578899999999999999999875  88899


Q ss_pred             cccEEEccCCcCcc
Q psy1672         196 KLMMIELHDNPWVC  209 (600)
Q Consensus       196 ~L~~L~l~~N~~~C  209 (600)
                      +|+.|+|++|.+..
T Consensus       176 ~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          176 KLQNLYLSKNHISD  189 (605)
T ss_dssp             TCCEEECCSSCCCB
T ss_pred             CCCEEECcCCCCCC
Confidence            99999999998753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.53  E-value=3.5e-14  Score=141.86  Aligned_cols=149  Identities=19%  Similarity=0.270  Sum_probs=130.2

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -+.+++.+.++..++.......++.|+|++|.|+.++.  +.  .+++|+.|+|++|+++.++.  +.. ++|++|+|++
T Consensus        43 L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~--~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~  115 (263)
T 1xeu_A           43 VQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LK--DLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLDN  115 (263)
T ss_dssp             CSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECCS
T ss_pred             CcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hc--cCCCCCEEECCCCccCCcCc--ccc-CcccEEEccC
Confidence            45788999999999854444559999999999999987  54  79999999999999999865  334 8999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      |.|+.++  .+..+++|+.|+|++|+++.+.  .+..+++|+.|+|++|++..+  ..+..+++|+.|++++|.+...+.
T Consensus       116 N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          116 NELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             SCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             CccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence            9999985  4889999999999999999984  588999999999999999998  678899999999999999988764


Q ss_pred             cc
Q psy1672         189 RS  190 (600)
Q Consensus       189 ~~  190 (600)
                      ..
T Consensus       190 ~~  191 (263)
T 1xeu_A          190 KY  191 (263)
T ss_dssp             EC
T ss_pred             cc
Confidence            43

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.53  E-value=8.3e-14  Score=156.81  Aligned_cols=177  Identities=20%  Similarity=0.227  Sum_probs=135.2

Q ss_pred             eEEEccCCCCCccCCCCCC-CC-ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccC-------CCCC
Q psy1672          30 QWMECRDKFLITIPEAPES-EL-TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD-------GLTN  100 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~-~~-l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~-------~l~~  100 (600)
                      +.++..+..+..+|..+.. .. +++|++++|.++.+|..... ..+.+|+.|+|++|.+....+..|.       .+.+
T Consensus       356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~  434 (636)
T 4eco_A          356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA-KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN  434 (636)
T ss_dssp             SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCT-TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred             CEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhh-cccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence            3566667777777765432 34 88899999999888864331 2344889999999988887776677       7778


Q ss_pred             ccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCC-------CcceeeCCCCcCcccChhhh-cCCCC
Q psy1672         101 LIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVP-------GLVKLDMSESRLEHISPEAF-TGAKS  172 (600)
Q Consensus       101 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~-------~L~~L~Ls~n~l~~i~~~~~-~~l~~  172 (600)
                      |++|+|++|.|+.++...|..+++|++|+|++|.++.++...+..+.       +|+.|+|++|+|+.++...+ ..+++
T Consensus       435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~  514 (636)
T 4eco_A          435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY  514 (636)
T ss_dssp             EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTT
T ss_pred             CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCC
Confidence            99999999999888887777788899999999988887776665443       88899999999887754433 37888


Q ss_pred             CCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         173 LESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       173 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      |+.|+|++|.+..++ ..+..+++|+.|++.+|...
T Consensus       515 L~~L~Ls~N~l~~ip-~~~~~l~~L~~L~Ls~N~~l  549 (636)
T 4eco_A          515 LVGIDLSYNSFSKFP-TQPLNSSTLKGFGIRNQRDA  549 (636)
T ss_dssp             CCEEECCSSCCSSCC-CGGGGCSSCCEEECCSCBCT
T ss_pred             cCEEECCCCCCCCcC-hhhhcCCCCCEEECCCCccc
Confidence            999999999988875 45667888899988776633

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.53  E-value=5e-14  Score=152.51  Aligned_cols=167  Identities=22%  Similarity=0.309  Sum_probs=141.2

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -+.++..+..+..++.......++.|++++|.++.++  .+.  .+++|+.|++++|.+..+.+  +..+++|++|+|++
T Consensus       201 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~  274 (466)
T 1o6v_A          201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG--TLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA  274 (466)
T ss_dssp             CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGG--GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             CCEEEecCCcccccccccccCCCCEEECCCCCcccch--hhh--cCCCCCEEECCCCccccchh--hhcCCCCCEEECCC
Confidence            3567777777777655333445999999999999875  343  68999999999999988865  88999999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      |.++.+++  +..+++|+.|+|++|.++.+.+  +..+++|+.|+|++|++..+.+  +..+++|+.|++++|.+..++ 
T Consensus       275 n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-  347 (466)
T 1o6v_A          275 NQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS-  347 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-
T ss_pred             CccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch-
Confidence            99998876  7889999999999999998755  7889999999999999998855  778999999999999999884 


Q ss_pred             ccccccccccEEEccCCcCcc
Q psy1672         189 RSVEPLLKLMMIELHDNPWVC  209 (600)
Q Consensus       189 ~~~~~l~~L~~L~l~~N~~~C  209 (600)
                       .+..+++|+.|++.+|.+..
T Consensus       348 -~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          348 -SLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             -GGTTCTTCCEEECCSSCCCB
T ss_pred             -hhccCCCCCEEeCCCCccCc
Confidence             67888999999999998753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.53  E-value=4.8e-14  Score=136.96  Aligned_cols=132  Identities=17%  Similarity=0.298  Sum_probs=118.0

Q ss_pred             ceEEEccCCCCCccCC-C--CCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEE
Q psy1672          29 KQWMECRDKFLITIPE-A--PESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEID  105 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~-~--~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~  105 (600)
                      .+.++..++.++.++. .  .....+++|+|++|.|+.++...|.  ++.+|+.|+|++|.|+.+.+..|.++++|++|+
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE--GASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC--CCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            3578888999998853 2  2234599999999999999988887  899999999999999999999999999999999


Q ss_pred             ccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCccc
Q psy1672         106 LSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI  162 (600)
Q Consensus       106 Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i  162 (600)
                      |++|.|+.+++..|..+++|+.|+|++|.++.+.+..|..+++|+.|+|++|.+.+-
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            999999999888999999999999999999999888899999999999999988754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.53  E-value=1.4e-13  Score=148.64  Aligned_cols=160  Identities=19%  Similarity=0.244  Sum_probs=118.6

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -+.+++.+..++.+|.......+++|+|++|.|+.++   +.  .+.+|++|+|++|.++.++   |..+++|++|+|++
T Consensus        44 L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~--~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           44 LTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LS--QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDT  115 (457)
T ss_dssp             CCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CT--TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCS
T ss_pred             CCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cc--cCCCCCEEECcCCCCceee---cCCCCcCCEEECCC
Confidence            4578888888888875444455888999999888875   33  6888899999888888873   78888888888888


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCC-cCcccChhhhcCCCCCCEEEcCCCcCCCCC
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES-RLEHISPEAFTGAKSLESIKLNGNRLSHFP  187 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~  187 (600)
                      |.++.++   +..+++|++|++++|.++.++   +..+++|+.|++++| .+..+   .+..+++|+.|++++|.++.++
T Consensus       116 N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~  186 (457)
T 3bz5_A          116 NKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD  186 (457)
T ss_dssp             SCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC
T ss_pred             CcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec
Confidence            8888874   677888888888888888762   566777777777777 34444   3556677777777777777765


Q ss_pred             cccccccccccEEEccCCcCc
Q psy1672         188 VRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       188 ~~~~~~l~~L~~L~l~~N~~~  208 (600)
                         +..+++|+.|++.+|.+.
T Consensus       187 ---l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          187 ---VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             ---CTTCTTCCEEECCSSCCS
T ss_pred             ---cccCCCCCEEECcCCcCC
Confidence               455666777777766654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=2.7e-14  Score=132.34  Aligned_cols=132  Identities=22%  Similarity=0.271  Sum_probs=117.9

Q ss_pred             CCCCccEEEeecccCc--ccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcc
Q psy1672          73 GLLNLQKLFLARCHIG--QIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLV  150 (600)
Q Consensus        73 ~l~~L~~L~L~~n~l~--~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~  150 (600)
                      ...+|+.|+|++|.+.  .++ ..|..+++|++|+|++|.|+.+  ..|..+++|++|+|++|.++...+..+..+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CcccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            4678999999999998  664 4578999999999999999998  5788999999999999999986677777899999


Q ss_pred             eeeCCCCcCcccCh-hhhcCCCCCCEEEcCCCcCCCCCc---ccccccccccEEEccCCcC
Q psy1672         151 KLDMSESRLEHISP-EAFTGAKSLESIKLNGNRLSHFPV---RSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       151 ~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~---~~~~~l~~L~~L~l~~N~~  207 (600)
                      .|+|++|.|+.++. ..+..+++|+.|++++|.+..++.   ..+..+++|+.|++.+|..
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            99999999999853 788899999999999999999986   5788899999999998874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.51  E-value=1e-13  Score=150.07  Aligned_cols=164  Identities=21%  Similarity=0.316  Sum_probs=115.5

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -+.+++.+..+..+|.......+++|+|++|.++.++.  +.  .+.+|+.|++++|.+..+.+  |..+++|++|+|++
T Consensus        48 l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           48 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN  121 (466)
T ss_dssp             CCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             ccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hh--ccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence            45788888888888864444559999999999998876  44  78999999999999988866  88999999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      |.++.+++  +..+++|++|++++|.+..+.  .+..+++|+.|+++ |.+..+.  .+..+++|+.|++++|.+..++ 
T Consensus       122 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~-  193 (466)
T 1o6v_A          122 NQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDIS-  193 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCCG-
T ss_pred             CCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCCh-
Confidence            99998875  788899999999999887763  25555555555553 2333331  2445555555555555555442 


Q ss_pred             ccccccccccEEEccCCcC
Q psy1672         189 RSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       189 ~~~~~l~~L~~L~l~~N~~  207 (600)
                       .+..+++|+.|++.+|.+
T Consensus       194 -~l~~l~~L~~L~l~~n~l  211 (466)
T 1o6v_A          194 -VLAKLTNLESLIATNNQI  211 (466)
T ss_dssp             -GGGGCTTCSEEECCSSCC
T ss_pred             -hhccCCCCCEEEecCCcc
Confidence             244445555555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=2.4e-13  Score=157.12  Aligned_cols=181  Identities=17%  Similarity=0.177  Sum_probs=142.7

Q ss_pred             eEEEccCCCCCccCCCCCC-CC-ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccc---cC--CCCCcc
Q psy1672          30 QWMECRDKFLITIPEAPES-EL-TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGA---LD--GLTNLI  102 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~-~~-l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~---f~--~l~~L~  102 (600)
                      +.++..++.+..+|..+.. .. |+.|+|++|.|+.+|... ......+|+.|+|++|.+....+..   +.  .+.+|+
T Consensus       598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~-~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~  676 (876)
T 4ecn_A          598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF-NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS  676 (876)
T ss_dssp             SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCC-CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEE
T ss_pred             eEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhh-hccccCCCCEEECcCCcCCCccccchhhhccccCCCcC
Confidence            4678888888888865443 34 999999999999888543 3123345999999999997654321   22  345899


Q ss_pred             EEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCC-------CCcceeeCCCCcCcccChhhhc--CCCCC
Q psy1672         103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV-------PGLVKLDMSESRLEHISPEAFT--GAKSL  173 (600)
Q Consensus       103 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l-------~~L~~L~Ls~n~l~~i~~~~~~--~l~~L  173 (600)
                      +|+|++|.|+.++...+..+++|+.|+|++|.++.++...+...       ++|+.|+|++|+|..++. .+.  .+++|
T Consensus       677 ~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~-~l~~~~l~~L  755 (876)
T 4ecn_A          677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD-DFRATTLPYL  755 (876)
T ss_dssp             EEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCG-GGSTTTCTTC
T ss_pred             EEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchH-HhhhccCCCc
Confidence            99999999999998878789999999999999998877766544       389999999999998854 454  89999


Q ss_pred             CEEEcCCCcCCCCCcccccccccccEEEccCCcCcccccc
Q psy1672         174 ESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNM  213 (600)
Q Consensus       174 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l  213 (600)
                      +.|+|++|.|..++ ..+..+++|+.|++++|+....|.+
T Consensus       756 ~~L~Ls~N~L~~lp-~~l~~L~~L~~L~Ls~N~~ls~N~l  794 (876)
T 4ecn_A          756 SNMDVSYNCFSSFP-TQPLNSSQLKAFGIRHQRDAEGNRI  794 (876)
T ss_dssp             CEEECCSSCCSSCC-CGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred             CEEEeCCCCCCccc-hhhhcCCCCCEEECCCCCCcccccc
Confidence            99999999999986 4567889999999998774433443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.50  E-value=1.7e-13  Score=133.98  Aligned_cols=127  Identities=23%  Similarity=0.331  Sum_probs=94.6

Q ss_pred             cEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCC
Q psy1672          78 QKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES  157 (600)
Q Consensus        78 ~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n  157 (600)
                      +.++.++++++.++...   .++|++|+|++|.|+.+.+..|..+++|+.|+|++|.|+.++...|..+++|+.|+|++|
T Consensus        22 ~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            44555555555554321   256666777777777666666666777777777777777776666777777777778888


Q ss_pred             cCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         158 RLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       158 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      +|+.+.+..|..+++|+.|+|++|+|..++. .+..+++|+.|++.+|.+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCC
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCC
Confidence            8887777778889999999999999999874 5688899999999999865

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.50  E-value=2.9e-14  Score=133.35  Aligned_cols=126  Identities=13%  Similarity=0.152  Sum_probs=58.2

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      +++|++++|.++.++. ...  ..++|+.|+|++|.|+.+  ..|..+++|++|+|++|.|+.+++..|..+++|++|+|
T Consensus        21 L~~L~l~~n~l~~i~~-~~~--~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           21 DRELDLRGYKIPVIEN-LGA--TLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             CEEEECTTSCCCSCCC-GGG--GTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             ceEEEeeCCCCchhHH-hhh--cCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            5555555555555432 111  122555555555555554  23455555555555555555554444444555555555


Q ss_pred             cCCCCCccCc-ccccCCCCcceeeCCCCcCcccChh---hhcCCCCCCEEEcCCC
Q psy1672         131 ARNPISKIEK-GAFQFVPGLVKLDMSESRLEHISPE---AFTGAKSLESIKLNGN  181 (600)
Q Consensus       131 s~N~i~~l~~-~~~~~l~~L~~L~Ls~n~l~~i~~~---~~~~l~~L~~L~Ls~N  181 (600)
                      ++|.++.++. ..+..+++|+.|++++|.+..++..   .+..+++|+.|++++|
T Consensus        96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            5555544432 2344444444444444444444222   2334444444444444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=4.9e-14  Score=127.78  Aligned_cols=126  Identities=20%  Similarity=0.270  Sum_probs=70.5

Q ss_pred             CCccEEEeecccCc--ccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCccee
Q psy1672          75 LNLQKLFLARCHIG--QIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL  152 (600)
Q Consensus        75 ~~L~~L~L~~n~l~--~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L  152 (600)
                      .+|+.|++++|.++  .++ ..|..+++|++|+|++|.|+.+  ..|..+++|++|+|++|.++...+..+..+++|+.|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            45555555555555  332 2445555666666666665555  345555566666666666655334444455666666


Q ss_pred             eCCCCcCcccC-hhhhcCCCCCCEEEcCCCcCCCCCc---ccccccccccEEEcc
Q psy1672         153 DMSESRLEHIS-PEAFTGAKSLESIKLNGNRLSHFPV---RSVEPLLKLMMIELH  203 (600)
Q Consensus       153 ~Ls~n~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~---~~~~~l~~L~~L~l~  203 (600)
                      ++++|.++.++ +..+..+++|+.|++++|.++.++.   ..+..+++|+.|++.
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            66666665542 2455556666666666666666554   345555666666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=5.5e-14  Score=131.43  Aligned_cols=131  Identities=21%  Similarity=0.273  Sum_probs=115.2

Q ss_pred             CCCCccEEEeecccCcccCccccCCCC-CccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcce
Q psy1672          73 GLLNLQKLFLARCHIGQIDSGALDGLT-NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVK  151 (600)
Q Consensus        73 ~l~~L~~L~L~~n~l~~i~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~  151 (600)
                      .+.+|+.|++++|.++.++ . +..+. +|++|+|++|.|+.+  ..|..+++|++|+|++|.++.+++..|..+++|+.
T Consensus        17 ~~~~L~~L~l~~n~l~~i~-~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIE-N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCC-C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchhH-H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            6889999999999999884 3 45554 999999999999998  36889999999999999999998777789999999


Q ss_pred             eeCCCCcCcccCh-hhhcCCCCCCEEEcCCCcCCCCCcc---cccccccccEEEccCCcC
Q psy1672         152 LDMSESRLEHISP-EAFTGAKSLESIKLNGNRLSHFPVR---SVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       152 L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~~---~~~~l~~L~~L~l~~N~~  207 (600)
                      |+|++|.|..++. ..+..+++|+.|++++|.+..++..   .+..+++|+.|++.+|..
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            9999999998854 4788999999999999999988754   578889999999998863

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.48  E-value=1.9e-13  Score=130.03  Aligned_cols=102  Identities=26%  Similarity=0.416  Sum_probs=83.3

Q ss_pred             cEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCC
Q psy1672          78 QKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES  157 (600)
Q Consensus        78 ~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n  157 (600)
                      +.+++++|+++.++...   ..+|++|+|++|.|+.++ ..|..+++|+.|+|++|.|+.+.+..|..+++|+.|+|++|
T Consensus        13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            34555555555554332   246778888888888777 46888888999999999999888888999999999999999


Q ss_pred             cCcccChhhhcCCCCCCEEEcCCCcC
Q psy1672         158 RLEHISPEAFTGAKSLESIKLNGNRL  183 (600)
Q Consensus       158 ~l~~i~~~~~~~l~~L~~L~Ls~N~l  183 (600)
                      +|+.+.+..|..+++|+.|+|++|.|
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l  114 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDI  114 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCC
Confidence            99999999999999999999999853

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.47  E-value=8.1e-14  Score=143.83  Aligned_cols=151  Identities=19%  Similarity=0.304  Sum_probs=106.3

Q ss_pred             ceEEEeeCCCCC--------------------CCChhhhcccC--------CCCccEEEeecccCcccCccccCCCCCcc
Q psy1672          51 TQVLDMSGNNLQ--------------------ILPKEAFRRAG--------LLNLQKLFLARCHIGQIDSGALDGLTNLI  102 (600)
Q Consensus        51 l~~L~Ls~n~L~--------------------~l~~~~f~~~~--------l~~L~~L~L~~n~l~~i~~~~f~~l~~L~  102 (600)
                      |++|||++|+|.                    .|+..+|.  +        +.+|+.|+|.+ .++.|...+|.++.+|+
T Consensus        51 L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~--~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~  127 (329)
T 3sb4_A           51 LKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFS--NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK  127 (329)
T ss_dssp             CCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTE--EEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred             CeEEecCcceeEEecCccccccccccccccccccCHHHhc--ccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence            888888888887                    56777776  7        88899999988 88888888899999999


Q ss_pred             EEEccCCCCCCCCccccCC-------------------------------------------------------------
Q psy1672         103 EIDLSDNLLTSIPSLTFQS-------------------------------------------------------------  121 (600)
Q Consensus       103 ~L~Ls~N~l~~l~~~~f~~-------------------------------------------------------------  121 (600)
                      .|+|++|.++.+++..|..                                                             
T Consensus       128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l  207 (329)
T 3sb4_A          128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL  207 (329)
T ss_dssp             EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred             eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence            9999888876666655543                                                             


Q ss_pred             -----------------CCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCC-EEEcCCCcC
Q psy1672         122 -----------------VRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLE-SIKLNGNRL  183 (600)
Q Consensus       122 -----------------l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~-~L~Ls~N~l  183 (600)
                                       +++|+.|+|++|.++.++..+|.++.+|+.|+|.+| ++.|...+|.++.+|+ .|+|.+ .+
T Consensus       208 ~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l  285 (329)
T 3sb4_A          208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV  285 (329)
T ss_dssp             EEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred             EEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence                             345666666666666666666666666666666665 6666666666666666 666665 56


Q ss_pred             CCCCcccccccccccEEEccCCc
Q psy1672         184 SHFPVRSVEPLLKLMMIELHDNP  206 (600)
Q Consensus       184 ~~l~~~~~~~l~~L~~L~l~~N~  206 (600)
                      +.+....|..+.+|+.+++.+|.
T Consensus       286 ~~I~~~aF~~c~~L~~l~l~~n~  308 (329)
T 3sb4_A          286 TAIEFGAFMGCDNLRYVLATGDK  308 (329)
T ss_dssp             CEECTTTTTTCTTEEEEEECSSC
T ss_pred             eEEchhhhhCCccCCEEEeCCCc
Confidence            66666666666666666665554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.47  E-value=7.8e-13  Score=142.82  Aligned_cols=158  Identities=18%  Similarity=0.236  Sum_probs=103.4

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -+.++..+..++.+|.. ....+++|++++|.|+.++   +.  .+++|++|++++|.++.++   |..+++|++|++++
T Consensus        66 L~~L~Ls~n~l~~~~~~-~l~~L~~L~Ls~N~l~~~~---~~--~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~  136 (457)
T 3bz5_A           66 LTKLICTSNNITTLDLS-QNTNLTYLACDSNKLTNLD---VT--PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCAR  136 (457)
T ss_dssp             CSEEECCSSCCSCCCCT-TCTTCSEEECCSSCCSCCC---CT--TCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTT
T ss_pred             CCEEEccCCcCCeEccc-cCCCCCEEECcCCCCceee---cC--CCCcCCEEECCCCcCCeec---CCCCCcCCEEECCC
Confidence            45788888888888733 2334899999999998875   43  7889999999999888874   78888899999998


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCC-CCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCC
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNP-ISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP  187 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~-i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~  187 (600)
                      |.|+.++   +..+++|++|++++|. +..+   .+..+++|+.|++++|+++.++   +..+++|+.|++++|.++.++
T Consensus       137 N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~  207 (457)
T 3bz5_A          137 NTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD  207 (457)
T ss_dssp             SCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC
T ss_pred             Cccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCeec
Confidence            8888763   5556666666666663 3332   2445555666666666555552   444555555555555555442


Q ss_pred             cccccccccccEEEccCCcC
Q psy1672         188 VRSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       188 ~~~~~~l~~L~~L~l~~N~~  207 (600)
                         +..+++|+.|++.+|.+
T Consensus       208 ---l~~l~~L~~L~Ls~N~l  224 (457)
T 3bz5_A          208 ---LNQNIQLTFLDCSSNKL  224 (457)
T ss_dssp             ---CTTCTTCSEEECCSSCC
T ss_pred             ---cccCCCCCEEECcCCcc
Confidence               33444455555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.47  E-value=5.7e-14  Score=127.35  Aligned_cols=125  Identities=18%  Similarity=0.201  Sum_probs=110.4

Q ss_pred             ceEEEeeCCCCC--CCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEE
Q psy1672          51 TQVLDMSGNNLQ--ILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDL  128 (600)
Q Consensus        51 l~~L~Ls~n~L~--~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L  128 (600)
                      ++.|++++|.++  .++. .+.  .+++|+.|++++|.++.+  ..|..+++|++|+|++|.++...+..+..+++|++|
T Consensus        19 l~~L~l~~n~l~~~~~~~-~~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           19 VKELVLDNSRSNEGKLEG-LTD--EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CSEEECTTCBCBTTBCCS-CCT--TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CeEEEccCCcCChhHHHH-HHh--hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            999999999998  7776 343  799999999999999998  568999999999999999999555577779999999


Q ss_pred             EccCCCCCccC-cccccCCCCcceeeCCCCcCcccCh---hhhcCCCCCCEEEcCC
Q psy1672         129 NLARNPISKIE-KGAFQFVPGLVKLDMSESRLEHISP---EAFTGAKSLESIKLNG  180 (600)
Q Consensus       129 ~Ls~N~i~~l~-~~~~~~l~~L~~L~Ls~n~l~~i~~---~~~~~l~~L~~L~Ls~  180 (600)
                      ++++|.++.+. ...+..+++|+.|++++|.++.+.+   ..+..+++|+.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999874 3678899999999999999999976   6788999999999864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.46  E-value=1.9e-13  Score=142.36  Aligned_cols=152  Identities=19%  Similarity=0.217  Sum_probs=132.0

Q ss_pred             eEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCC-CCCCccccCCCCCCCE-EE
Q psy1672          52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL-TSIPSLTFQSVRFLRD-LN  129 (600)
Q Consensus        52 ~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~-L~  129 (600)
                      ++++.++++|++||..++     .+|+.|+|++|+|+.|++++|.++++|++|+|++|.+ +.++...|.++++|.+ +.
T Consensus        12 ~~v~C~~~~Lt~iP~~l~-----~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP-----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC-----TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             CEEEecCCCCCccCcCcC-----CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            468899999999998653     5899999999999999999999999999999999997 4578888999998876 56


Q ss_pred             ccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCC-CcCCCCCcccccccc-cccEEEccCCcC
Q psy1672         130 LARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNG-NRLSHFPVRSVEPLL-KLMMIELHDNPW  207 (600)
Q Consensus       130 Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~-~L~~L~l~~N~~  207 (600)
                      +..|+++.+.+..|..+++|+.|++++|+|..+++..+....++..|++.+ +.+..++...|..+. .++.|++.+|.+
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            678999999999999999999999999999999887777777888888854 688888877777765 578899999875


Q ss_pred             c
Q psy1672         208 V  208 (600)
Q Consensus       208 ~  208 (600)
                      .
T Consensus       167 ~  167 (350)
T 4ay9_X          167 Q  167 (350)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.45  E-value=1.1e-12  Score=146.57  Aligned_cols=77  Identities=23%  Similarity=0.315  Sum_probs=47.0

Q ss_pred             CCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEc
Q psy1672         123 RFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIEL  202 (600)
Q Consensus       123 ~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l  202 (600)
                      ++|+.|+|++|.++.++    ..+++|+.|+|++|.|+.++.    .+++|+.|+|++|.|+.++ ..+..+++|+.|++
T Consensus       221 ~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCC-GGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCC-HHHhhccccCEEEe
Confidence            45556666666655543    234566666666666666543    4566666777777666665 34666666777777


Q ss_pred             cCCcCc
Q psy1672         203 HDNPWV  208 (600)
Q Consensus       203 ~~N~~~  208 (600)
                      .+|++.
T Consensus       292 ~~N~l~  297 (622)
T 3g06_A          292 EGNPLS  297 (622)
T ss_dssp             CSCCCC
T ss_pred             cCCCCC
Confidence            777654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.42  E-value=2.7e-12  Score=138.43  Aligned_cols=137  Identities=23%  Similarity=0.331  Sum_probs=75.3

Q ss_pred             eEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCC
Q psy1672          30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN  109 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N  109 (600)
                      +.+++.+.+++.+|... .. +++|++++|.++.+|..      +.+|+.|++++|.++.++..    .++|++|+|++|
T Consensus        74 ~~L~l~~~~l~~lp~~~-~~-L~~L~l~~n~l~~lp~~------~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n  141 (454)
T 1jl5_A           74 HELELNNLGLSSLPELP-PH-LESLVASCNSLTELPEL------PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN  141 (454)
T ss_dssp             SEEECTTSCCSCCCSCC-TT-CSEEECCSSCCSSCCCC------CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS
T ss_pred             CEEEecCCccccCCCCc-CC-CCEEEccCCcCCccccc------cCCCcEEECCCCccCcccCC----CCCCCEEECcCC
Confidence            56888888888887743 33 88888888888777632      34555555555555544321    135555555555


Q ss_pred             CCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCC
Q psy1672         110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF  186 (600)
Q Consensus       110 ~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  186 (600)
                      .++.++  .|..+++|++|++++|.++.++..    ..+|+.|++++|.++.++  .+.++++|+.|++++|.+..+
T Consensus       142 ~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l  210 (454)
T 1jl5_A          142 QLEKLP--ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKL  210 (454)
T ss_dssp             CCSSCC--CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSC
T ss_pred             CCCCCc--ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcC
Confidence            555544  255555555555555555544221    134555555555555542  244455555555555544443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.42  E-value=2.1e-13  Score=120.90  Aligned_cols=55  Identities=29%  Similarity=0.722  Sum_probs=46.2

Q ss_pred             EEccCCcCccccccccchhhhcccCCC--CCCCCCCCCccccccccccccccccCcc
Q psy1672         200 IELHDNPWVCDCNMRSIKMWLADKKNV--PVQPACTGPERLSGKVFSDLHADDFACK  254 (600)
Q Consensus       200 L~l~~N~~~C~C~l~~l~~w~~~~~~~--~~~~~C~~p~~l~g~~l~~l~~~~~~C~  254 (600)
                      |+|.+|||.|||++.||..|+......  ...+.|..|..++|+.+.++..++|.|.
T Consensus        60 L~L~~NP~~CdC~l~~l~~wl~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~l~c~  116 (130)
T 3rfe_A           60 AHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDELRAA  116 (130)
T ss_dssp             EECCSSCCBCSGGGHHHHHHHHTSSCSGGGTTCBCCBSTTTTTCBGGGCCHHHHHHT
T ss_pred             EEecCCCeeccCccHHHHHHHHhCcccccccCcEeCcChHHcCCCcccCCHHHhhCc
Confidence            478899999999999999999855332  2567999999999999999998888653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.42  E-value=3.8e-13  Score=138.76  Aligned_cols=103  Identities=22%  Similarity=0.388  Sum_probs=97.9

Q ss_pred             CCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcc-eeeCCCCcCcccChhhhcCCCCCCEE
Q psy1672          98 LTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLV-KLDMSESRLEHISPEAFTGAKSLESI  176 (600)
Q Consensus        98 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~-~L~Ls~n~l~~i~~~~~~~l~~L~~L  176 (600)
                      +++|+.|+|++|+++.|+...|.++.+|+.|+|.+| ++.+...+|.++.+|+ .+++.+ .++.|...+|.++.+|+.|
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            578999999999999999999999999999999998 9999999999999999 999998 8999999999999999999


Q ss_pred             EcCCCcCCCCCcccccccccccEEEc
Q psy1672         177 KLNGNRLSHFPVRSVEPLLKLMMIEL  202 (600)
Q Consensus       177 ~Ls~N~l~~l~~~~~~~l~~L~~L~l  202 (600)
                      ++++|.++.++...|..+++|+.+..
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999999999999999999998863

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.40  E-value=1e-12  Score=110.86  Aligned_cols=93  Identities=18%  Similarity=0.373  Sum_probs=76.5

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+..+.+.+|+.+.|.|.+.|.|.|.|.|+++|+.+....    ..++.+...+.   .+.|.|.+++.+|.|.|
T Consensus         6 P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~----~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y   78 (100)
T 3knb_A            6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQE----QGRFHIENTDD---LTTLIIMDVQKQDGGLY   78 (100)
T ss_dssp             EEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTG----GGTEEEEECSS---EEEEEESSCCGGGCEEE
T ss_pred             CEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeec----cceeeeecccc---eEEEEEcCCCccCCEEE
Confidence            455555677888999999999999999999999999999886543    23454444432   35799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~  354 (600)
                      +|.|+|..|.++..+.|.|.
T Consensus        79 ~C~a~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           79 TLSLGNEFGSDSATVNIHIR   98 (100)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEEE
Confidence            99999999999998888874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.40  E-value=5e-12  Score=136.37  Aligned_cols=158  Identities=23%  Similarity=0.264  Sum_probs=117.8

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -+.++..+..++.+|...  ..+++|++++|.++.++..      ..+|++|++++|.++.++  .|.++++|++|++++
T Consensus        93 L~~L~l~~n~l~~lp~~~--~~L~~L~l~~n~l~~l~~~------~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~  162 (454)
T 1jl5_A           93 LESLVASCNSLTELPELP--QSLKSLLVDNNNLKALSDL------PPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDN  162 (454)
T ss_dssp             CSEEECCSSCCSSCCCCC--TTCCEEECCSSCCSCCCSC------CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCS
T ss_pred             CCEEEccCCcCCcccccc--CCCcEEECCCCccCcccCC------CCCCCEEECcCCCCCCCc--ccCCCCCCCEEECCC
Confidence            457788888888888654  2388888888888877631      258888888888888875  388888888888888


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      |.++.++..    ..+|++|++++|.++.++  .|..+++|+.|++++|.+..++.    ...+|+.|++++|.+..++ 
T Consensus       163 N~l~~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~n~l~~lp-  231 (454)
T 1jl5_A          163 NSLKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEELP-  231 (454)
T ss_dssp             SCCSCCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSSCC-
T ss_pred             CcCcccCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCC----CcCcccEEECcCCcCCccc-
Confidence            888877652    347888888888888764  47778888888888888877643    1257777888888777766 


Q ss_pred             ccccccccccEEEccCCcCc
Q psy1672         189 RSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       189 ~~~~~l~~L~~L~l~~N~~~  208 (600)
                       .+..+++|+.|++++|.+.
T Consensus       232 -~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          232 -ELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCS
T ss_pred             -ccCCCCCCCEEECCCCcCC
Confidence             2667777777777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.39  E-value=8.5e-14  Score=158.82  Aligned_cols=152  Identities=18%  Similarity=0.193  Sum_probs=98.4

Q ss_pred             ceEEEeeCCCCCC---------CChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCC
Q psy1672          51 TQVLDMSGNNLQI---------LPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQS  121 (600)
Q Consensus        51 l~~L~Ls~n~L~~---------l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~  121 (600)
                      ++.++|+.|.|..         ++...|.  .+.+|+.|+|++|.+..++...| .+++|++|+|++|.|+.++. .|..
T Consensus       193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~--~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~-~~~~  268 (727)
T 4b8c_D          193 LQHKKLSQYSIDEDDDIENRMVMPKDSKY--DDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPA-EIKN  268 (727)
T ss_dssp             -------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCG-GGGG
T ss_pred             hhcCccCcccccCccccccceecChhhhc--cCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccCh-hhhC
Confidence            5556666655543         2344454  68888888888888888766644 78888888888888887775 5778


Q ss_pred             CCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccc-cccEE
Q psy1672         122 VRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLL-KLMMI  200 (600)
Q Consensus       122 l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L  200 (600)
                      +++|++|+|++|.|+.+ +..|..+++|+.|+|++|.|..++. .|..+++|+.|+|++|.|....+..+..+. .+..+
T Consensus       269 l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l  346 (727)
T 4b8c_D          269 LSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIF  346 (727)
T ss_dssp             GTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHH
Confidence            88888888888888876 4557788888888888888887744 488888888888888888866555443322 11224


Q ss_pred             EccCCcCc
Q psy1672         201 ELHDNPWV  208 (600)
Q Consensus       201 ~l~~N~~~  208 (600)
                      ++.+|.+.
T Consensus       347 ~l~~N~l~  354 (727)
T 4b8c_D          347 YLRDNRPE  354 (727)
T ss_dssp             HHHHCCCC
T ss_pred             hhccCccc
Confidence            45555543

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.38  E-value=9.1e-13  Score=112.64  Aligned_cols=94  Identities=31%  Similarity=0.413  Sum_probs=77.7

Q ss_pred             cccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         253 CKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       253 C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      ..|.+...+..+.+.+|+.+.|.|.+.|.|.|.|.|+++|+.+....      ++.+..++   ....|.|.+++.+|.|
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~------~~~~~~~~---~~~~L~I~~v~~~D~G   82 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASE------RLSFPADG---AEHGLLLTAALPTDAG   82 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS------SEECCEET---TEEEEEESSCCGGGCE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECccccccee------eEEEeecC---ceEEEEEecCChhhCE
Confidence            35666667778889999999999999999999999999999886543      33333333   2347999999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEEEE
Q psy1672         333 RFYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      .|+|+|.|..|..+..+.|.|..
T Consensus        83 ~Y~C~a~N~~G~~~~~~~l~V~~  105 (107)
T 3knb_B           83 VYVCRARNAAGEAYAAAAVTVLE  105 (107)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEECCCEEEEEEEEEEEc
Confidence            99999999999999998888854

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.36  E-value=8.1e-13  Score=150.72  Aligned_cols=151  Identities=18%  Similarity=0.228  Sum_probs=99.8

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEE-----EeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCC
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKL-----FLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFL  125 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L-----~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L  125 (600)
                      ++.|+|.+|.+..++...+.   ...|..+     ++..|.+. +.+..|..+.+|+.|+|++|.|..++...| .+++|
T Consensus       175 ~~~l~L~~n~~~~~~~~~l~---~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L  249 (727)
T 4b8c_D          175 TPKIELFANGKDEANQALLQ---HKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSC
T ss_pred             cceEEeeCCCCCcchhhHhh---cCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCC
Confidence            78899999999887665543   2333333     33334444 456779999999999999999999998655 78999


Q ss_pred             CEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCC
Q psy1672         126 RDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN  205 (600)
Q Consensus       126 ~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N  205 (600)
                      ++|+|++|.|+.++ ..|..+++|+.|+|++|.|+.+ +..|..+.+|+.|+|++|.|..++.. |..+++|+.|+|++|
T Consensus       250 ~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          250 TRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTS
T ss_pred             CEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCC
Confidence            99999999999774 5689999999999999999988 66789999999999999999999865 899999999999999


Q ss_pred             cCcc
Q psy1672         206 PWVC  209 (600)
Q Consensus       206 ~~~C  209 (600)
                      ++..
T Consensus       327 ~l~~  330 (727)
T 4b8c_D          327 PLEK  330 (727)
T ss_dssp             CCCS
T ss_pred             ccCC
Confidence            9864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.34  E-value=4.2e-13  Score=140.38  Aligned_cols=156  Identities=22%  Similarity=0.298  Sum_probs=103.5

Q ss_pred             ceEEEeeCCCCCCCCh----hhhcccCCC-CccEEEeecccCcccCccccCCC-----CCccEEEccCCCCCCCCccc--
Q psy1672          51 TQVLDMSGNNLQILPK----EAFRRAGLL-NLQKLFLARCHIGQIDSGALDGL-----TNLIEIDLSDNLLTSIPSLT--  118 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~----~~f~~~~l~-~L~~L~L~~n~l~~i~~~~f~~l-----~~L~~L~Ls~N~l~~l~~~~--  118 (600)
                      +++|+|++|.|+.++.    ..|.  .++ +|+.|+|++|.++......|..+     ++|++|+|++|.|+......  
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFA--NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHH--TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHH--hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            7788888888777766    4554  566 78888888887777766555554     77888888888777665542  


Q ss_pred             --cCCC-CCCCEEEccCCCCCccCccccc----C-CCCcceeeCCCCcCcccChhh----hcCCC-CCCEEEcCCCcCCC
Q psy1672         119 --FQSV-RFLRDLNLARNPISKIEKGAFQ----F-VPGLVKLDMSESRLEHISPEA----FTGAK-SLESIKLNGNRLSH  185 (600)
Q Consensus       119 --f~~l-~~L~~L~Ls~N~i~~l~~~~~~----~-l~~L~~L~Ls~n~l~~i~~~~----~~~l~-~L~~L~Ls~N~l~~  185 (600)
                        +..+ ++|++|+|++|.++......+.    . ..+|+.|+|++|.+.......    +..++ +|+.|+|++|.++.
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence              3333 6788888888877766554332    2 257788888888777544333    33444 77888888887776


Q ss_pred             CCccccc----cc-ccccEEEccCCcCc
Q psy1672         186 FPVRSVE----PL-LKLMMIELHDNPWV  208 (600)
Q Consensus       186 l~~~~~~----~l-~~L~~L~l~~N~~~  208 (600)
                      .....+.    .+ .+|+.|++++|.+.
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            6643333    23 47777887777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.29  E-value=7.2e-12  Score=138.71  Aligned_cols=105  Identities=19%  Similarity=0.323  Sum_probs=81.1

Q ss_pred             CccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcC
Q psy1672         100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLN  179 (600)
Q Consensus       100 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls  179 (600)
                      .|+.|+|++|.|+.++.  |..+++|+.|+|++|.|+.++ ..|..+++|+.|+|++|.|+.++  .+..+++|+.|+|+
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD--GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccc-hhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECC
Confidence            47788888888888764  777788888888888888663 46777888888888888888763  67778888888888


Q ss_pred             CCcCCCCC-cccccccccccEEEccCCcCcc
Q psy1672         180 GNRLSHFP-VRSVEPLLKLMMIELHDNPWVC  209 (600)
Q Consensus       180 ~N~l~~l~-~~~~~~l~~L~~L~l~~N~~~C  209 (600)
                      +|.|+.+. +..+..+++|+.|++++|++..
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            88888775 5677778888888888887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.29  E-value=7.3e-12  Score=138.66  Aligned_cols=123  Identities=23%  Similarity=0.321  Sum_probs=107.8

Q ss_pred             CCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeC
Q psy1672          75 LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM  154 (600)
Q Consensus        75 ~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~L  154 (600)
                      ..|+.|+|++|.|+.++.  |..+++|+.|+|++|.|+.+|. .|..+++|+.|+|++|.|+.++  .|..+++|+.|+|
T Consensus       441 ~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~L  515 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLL  515 (567)
T ss_dssp             TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEEC
T ss_pred             cCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEEC
Confidence            368999999999999864  8999999999999999999887 7889999999999999999975  6889999999999


Q ss_pred             CCCcCcccC-hhhhcCCCCCCEEEcCCCcCCCCCcc---cccccccccEEEc
Q psy1672         155 SESRLEHIS-PEAFTGAKSLESIKLNGNRLSHFPVR---SVEPLLKLMMIEL  202 (600)
Q Consensus       155 s~n~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~---~~~~l~~L~~L~l  202 (600)
                      ++|+|+.+. +..+..+++|+.|+|++|.|+.++..   .+..+++|+.|++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999997 88899999999999999999988643   2344678888764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.28  E-value=5.7e-14  Score=133.98  Aligned_cols=147  Identities=22%  Similarity=0.311  Sum_probs=114.0

Q ss_pred             ceEEEeeCC--CCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEE
Q psy1672          51 TQVLDMSGN--NLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDL  128 (600)
Q Consensus        51 l~~L~Ls~n--~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L  128 (600)
                      ++.+.+.+.  .++.++.. |.  .+.+|+.|+|++|.++.++  .|..+++|++|+|++|.|+.++. .+..+++|++|
T Consensus        25 l~~~~l~~~~~~l~~l~~~-~~--~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L   98 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDAT-LS--TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEEL   98 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHH-HH--HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEE
T ss_pred             hheeEeccccCcHhhhhHH-Hh--cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEE
Confidence            566666654  56666654 33  6889999999999998876  68889999999999999998876 56667889999


Q ss_pred             EccCCCCCccCcccccCCCCcceeeCCCCcCcccCh-hhhcCCCCCCEEEcCCCcCCCCCcc----------cccccccc
Q psy1672         129 NLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISP-EAFTGAKSLESIKLNGNRLSHFPVR----------SVEPLLKL  197 (600)
Q Consensus       129 ~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~~----------~~~~l~~L  197 (600)
                      +|++|.++.++  .+..+++|+.|++++|++..+.. ..+..+++|+.|++++|.+....+.          .+..+++|
T Consensus        99 ~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L  176 (198)
T 1ds9_A           99 WISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL  176 (198)
T ss_dssp             EEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred             ECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence            99999998874  47788899999999999988754 5678889999999999988655322          36677788


Q ss_pred             cEEEccCCcC
Q psy1672         198 MMIELHDNPW  207 (600)
Q Consensus       198 ~~L~l~~N~~  207 (600)
                      +.|+  +|++
T Consensus       177 ~~Ld--~~~i  184 (198)
T 1ds9_A          177 KKLD--GMPV  184 (198)
T ss_dssp             SEEC--CGGG
T ss_pred             EEEC--Cccc
Confidence            8775  5553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.27  E-value=1.2e-12  Score=134.95  Aligned_cols=152  Identities=18%  Similarity=0.179  Sum_probs=77.1

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCccc-CccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEE
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLN  129 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  129 (600)
                      ++.|++++|.+.......+   .+.+|+.|+|++|.+... .+..+..+++|++|+|++|.++......+..+++|++|+
T Consensus        72 l~~L~l~~n~l~~~~~~~~---~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           72 VIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             CSEEECTTCEECSCCCSCC---CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ceEEEcCCccccccchhhc---cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            5566666666555544443   355666666666655432 233455556666666666655533333445555666666


Q ss_pred             ccCC-CCCcc-CcccccCCCCcceeeCCCC-cCccc-ChhhhcCCC-CCCEEEcCCCc--CC--CCCcccccccccccEE
Q psy1672         130 LARN-PISKI-EKGAFQFVPGLVKLDMSES-RLEHI-SPEAFTGAK-SLESIKLNGNR--LS--HFPVRSVEPLLKLMMI  200 (600)
Q Consensus       130 Ls~N-~i~~l-~~~~~~~l~~L~~L~Ls~n-~l~~i-~~~~~~~l~-~L~~L~Ls~N~--l~--~l~~~~~~~l~~L~~L  200 (600)
                      |++| .++.. .+..+..+++|+.|++++| .++.. .+..+..++ +|+.|+|++|.  ++  .++ ..+..+++|+.|
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L  227 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPNLVHL  227 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTTCSEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH-HHHhhCCCCCEE
Confidence            6655 34421 1223445555666666655 55542 133344555 55666665552  22  111 233445555555


Q ss_pred             EccCCc
Q psy1672         201 ELHDNP  206 (600)
Q Consensus       201 ~l~~N~  206 (600)
                      ++.+|.
T Consensus       228 ~l~~~~  233 (336)
T 2ast_B          228 DLSDSV  233 (336)
T ss_dssp             ECTTCT
T ss_pred             eCCCCC
Confidence            555554

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.24  E-value=5.1e-11  Score=102.45  Aligned_cols=97  Identities=18%  Similarity=0.250  Sum_probs=78.3

Q ss_pred             cccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         253 CKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       253 C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      ..|.+...+..+.+..|+.+.|.|.+.|.|.+.+.|++++..+....      ++.+...+   ..+.|.|.+++..|.|
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~------~~~~~~~~---~~~~L~I~~v~~~D~G   76 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE------HMKVENSE---NGSKLTILAARQEHCG   76 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSS------SEEEEECS---SEEEEEETTCCTTTCE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCC------CEEEEEcC---CEEEEEECCCChhcCE
Confidence            45666666777889999999999999999999999999998775432      33333222   2458999999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEEEEccC
Q psy1672         333 RFYCVAENRAGIADANFTLQVTYRGV  358 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V~~~~~  358 (600)
                      .|+|.|.|..|.....+.|.|...+.
T Consensus        77 ~Y~C~a~N~~g~~~~~~~l~V~~~p~  102 (114)
T 2cqv_A           77 CYTLLVENKLGSRQAQVNLTVVDKPD  102 (114)
T ss_dssp             EEEEEEECSSCEEECCEEEEEECSCS
T ss_pred             EEEEEEEECCCcEEEEEEEEEECCCC
Confidence            99999999999998889999876543

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.23  E-value=3.9e-11  Score=100.96  Aligned_cols=95  Identities=27%  Similarity=0.403  Sum_probs=76.9

Q ss_pred             CcccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         252 ACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       252 ~C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      .+.|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....      +..+..++   ....|.|.+++..|.
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~------~~~~~~~~---~~~~L~i~~~~~~D~   76 (103)
T 3qp3_A            6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESS------KIHYTNTS---GVLTLEILDCHTDDS   76 (103)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCS------SEEEEEET---TEEEEEECSCCGGGC
T ss_pred             CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCC------CEEEEECC---CEEEEEEcCCCcccC
Confidence            356666666777888999999999999999999999999998876543      23333222   134799999999999


Q ss_pred             eEEEEEEecCCCceeEEEEEEEEE
Q psy1672         332 GRFYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       332 G~Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      |.|+|.|.|..|..+..+.|.|..
T Consensus        77 G~Y~C~a~N~~G~~~~~~~l~V~~  100 (103)
T 3qp3_A           77 GTYRAVCTNYKGEASDYATLDVTG  100 (103)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEC
Confidence            999999999999999888888853

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.23  E-value=4e-11  Score=100.24  Aligned_cols=94  Identities=29%  Similarity=0.499  Sum_probs=74.4

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+..|+.++|.|.+.|.|.+.+.|+++++.+.....    .+.....++    ...|.|.+++..|.|.
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~----~~~~~~~~~----~~~L~i~~v~~~D~G~   76 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDL----HKMIVSEKG----LHSLIFEVVRASDAGA   76 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSS----SCEEEETTT----EEEEEESSCCGGGCEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCc----EEEEEcCCC----eEEEEECCCCcccCEE
Confidence            34555556677889999999999999999999999999988765431    122222222    2479999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      |+|.|.|..|..+..+.|.|..
T Consensus        77 Y~C~a~n~~g~~~~~~~l~V~~   98 (100)
T 2kdg_A           77 YACVAKNRAGEATFTVQLDVLA   98 (100)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEcCCCeEEEEEEEEEEe
Confidence            9999999999999999988854

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.22  E-value=3.9e-12  Score=132.97  Aligned_cols=154  Identities=18%  Similarity=0.151  Sum_probs=124.9

Q ss_pred             EEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCc----cccCCCC-CccEEEccCCCCCCCCccccCCC-----
Q psy1672          53 VLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS----GALDGLT-NLIEIDLSDNLLTSIPSLTFQSV-----  122 (600)
Q Consensus        53 ~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~----~~f~~l~-~L~~L~Ls~N~l~~l~~~~f~~l-----  122 (600)
                      .+.++.|.++...+..+.  ...+|+.|+|++|.++.+..    .+|..++ +|++|+|++|.|+......|..+     
T Consensus         2 ~~~ls~n~~~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTS--IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EEECCCCTTCCHHHHHHT--SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             ccccccccchHHHHHHHh--CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence            367889999977666664  55669999999999999987    7888999 99999999999998876666654     


Q ss_pred             CCCCEEEccCCCCCccCccc----ccCC-CCcceeeCCCCcCcccChhhhc----C-CCCCCEEEcCCCcCCCCCcccc-
Q psy1672         123 RFLRDLNLARNPISKIEKGA----FQFV-PGLVKLDMSESRLEHISPEAFT----G-AKSLESIKLNGNRLSHFPVRSV-  191 (600)
Q Consensus       123 ~~L~~L~Ls~N~i~~l~~~~----~~~l-~~L~~L~Ls~n~l~~i~~~~~~----~-l~~L~~L~Ls~N~l~~l~~~~~-  191 (600)
                      ++|++|+|++|.++......    +..+ ++|+.|+|++|.+.......+.    . ..+|+.|+|++|.+.......+ 
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            89999999999998776553    3444 8999999999999998776543    3 3699999999999997654333 


Q ss_pred             ---cccc-cccEEEccCCcCc
Q psy1672         192 ---EPLL-KLMMIELHDNPWV  208 (600)
Q Consensus       192 ---~~l~-~L~~L~l~~N~~~  208 (600)
                         ..++ +|+.|++.+|.+.
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHhcCCccccEeeecCCCCc
Confidence               3344 8999999999865

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.22  E-value=1.8e-12  Score=136.58  Aligned_cols=157  Identities=20%  Similarity=0.226  Sum_probs=103.6

Q ss_pred             CceEEEeeCCCCCC-----CChhhhcccCCCCccEEEeecccCcccCccccC----CC---------CCccEEEccCCCC
Q psy1672          50 LTQVLDMSGNNLQI-----LPKEAFRRAGLLNLQKLFLARCHIGQIDSGALD----GL---------TNLIEIDLSDNLL  111 (600)
Q Consensus        50 ~l~~L~Ls~n~L~~-----l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~----~l---------~~L~~L~Ls~N~l  111 (600)
                      .+++|+|++|.|..     ++.. +.  .+++|++|+|++|.++......|.    .+         ++|++|+|++|.|
T Consensus        95 ~L~~L~Ls~n~l~~~~~~~l~~~-l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l  171 (386)
T 2ca6_A           95 KLHTVRLSDNAFGPTAQEPLIDF-LS--KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL  171 (386)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHH-HH--HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred             cccEEECCCCcCCHHHHHHHHHH-HH--hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence            48888888888876     3333 33  578888888888888644333333    23         7888888888887


Q ss_pred             CC--CCc--cccCCCCCCCEEEccCCCCCc-----cCcccccCCCCcceeeCCCCcCc----ccChhhhcCCCCCCEEEc
Q psy1672         112 TS--IPS--LTFQSVRFLRDLNLARNPISK-----IEKGAFQFVPGLVKLDMSESRLE----HISPEAFTGAKSLESIKL  178 (600)
Q Consensus       112 ~~--l~~--~~f~~l~~L~~L~Ls~N~i~~-----l~~~~~~~l~~L~~L~Ls~n~l~----~i~~~~~~~l~~L~~L~L  178 (600)
                      +.  ++.  ..|..+++|+.|+|++|.++.     +.+..+..+++|+.|+|++|.+.    ...+..+..+++|+.|+|
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L  251 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL  251 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence            62  221  245566778888888887762     22335667778888888888874    222456677788888888


Q ss_pred             CCCcCCCCCc----cccc--ccccccEEEccCCcCcc
Q psy1672         179 NGNRLSHFPV----RSVE--PLLKLMMIELHDNPWVC  209 (600)
Q Consensus       179 s~N~l~~l~~----~~~~--~l~~L~~L~l~~N~~~C  209 (600)
                      ++|.+.....    ..+.  .+++|+.|++.+|.+..
T Consensus       252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            8887765421    2232  26777888888777543

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.20  E-value=7.2e-11  Score=98.45  Aligned_cols=91  Identities=25%  Similarity=0.306  Sum_probs=73.0

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEe--eCCceeeeeeEEEecCCCCCC
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI--EQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~--~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      .|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....      +..+.  ..+    ...|.|.+++..|+
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~------~~~~~~~~~~----~~~L~i~~v~~~D~   74 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD------RIYWYWPEDN----VCELVIRDVTGEDS   74 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS------SEEEEEEETT----EEEEEECSCCGGGC
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCC------CEEEEEcCCC----EEEEEECCCCcCCC
Confidence            3455555667788999999999999999999999999998876433      22221  222    34799999999999


Q ss_pred             eEEEEEEecCCCceeEEEEEEEE
Q psy1672         332 GRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       332 G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |.|+|.|.|..|.....+.|.|.
T Consensus        75 G~Y~C~a~N~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           75 ASIMVKAINIAGETSSHAFLLVQ   97 (99)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCcEEEEEEEEEe
Confidence            99999999999999988888874

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.20  E-value=4.8e-11  Score=98.57  Aligned_cols=88  Identities=19%  Similarity=0.282  Sum_probs=69.7

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcC--eeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG--RLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g--~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      |.+...+..+.+..|+.+.|.|.+.|.|.|.+.|++++  ..+....      +.. ...    ..+.|.|.+++..|+|
T Consensus         3 P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~------~~~-~~~----~~~~L~i~~~~~~D~G   71 (93)
T 1wit_A            3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL------LVD-AKS----STTSIFFPSAKRADSG   71 (93)
T ss_dssp             CEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS------EEE-EET----TEEEEECTTBCGGGCE
T ss_pred             CeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE------EEE-ecC----CEEEEEECCCChhcCE
Confidence            44444456778899999999999999999999999988  7664321      111 111    2357999999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEE
Q psy1672         333 RFYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      .|+|.|.|..|.++..+.|.|
T Consensus        72 ~Y~C~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           72 NYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEcCCCeEEEEEEEEE
Confidence            999999999999888888876

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.19  E-value=6.2e-11  Score=100.28  Aligned_cols=86  Identities=20%  Similarity=0.339  Sum_probs=67.5

Q ss_pred             cccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCcee
Q psy1672         267 VSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD  346 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~  346 (600)
                      ..+..+.+.|.+.|.|.|++.|+++|+.+....    .....+...+.....+.|.|.+++.+|+|.|+|+|+|..|.++
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   89 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESK----YICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDE   89 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCS----SEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCC----cEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEe
Confidence            356788999999999999999999999886543    1112222223333456799999999999999999999999999


Q ss_pred             EEEEEEEEEc
Q psy1672         347 ANFTLQVTYR  356 (600)
Q Consensus       347 ~~v~L~V~~~  356 (600)
                      .++.|.|...
T Consensus        90 ~~~~l~V~~~   99 (103)
T 1wwb_X           90 KQISAHFMGW   99 (103)
T ss_dssp             EEEEECCSCC
T ss_pred             EEEEEEECCC
Confidence            9998888543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.19  E-value=1.4e-10  Score=122.83  Aligned_cols=167  Identities=19%  Similarity=0.268  Sum_probs=136.1

Q ss_pred             eEEEccCCCCCccCCCCCC--CCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEcc
Q psy1672          30 QWMECRDKFLITIPEAPES--ELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS  107 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~--~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls  107 (600)
                      ..+...+ .++.|......  ..|+.|+|.+|+++.|+..+|.   +.+|+.|.|.+ .++.|...+|.++.+|+.|+|.
T Consensus       160 ~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~---~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          160 QEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV---YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT---TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECC
T ss_pred             eEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe---ecccCEEEeCC-chheehhhHhhCCCCCCEEecC
Confidence            3455443 67777754433  4599999999999999999995   68999999985 4889999999999999999998


Q ss_pred             CCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCc-----ccChhhhcCCCCCCEEEcCCCc
Q psy1672         108 DNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE-----HISPEAFTGAKSLESIKLNGNR  182 (600)
Q Consensus       108 ~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~-----~i~~~~~~~l~~L~~L~Ls~N~  182 (600)
                      .| ++.|...+|.+ .+|+.+.| .+.++.+...+|.++.+|+.+.+.+|.+.     .|...+|.++.+|+.++|. +.
T Consensus       235 ~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~  310 (401)
T 4fdw_A          235 EN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ES  310 (401)
T ss_dssp             TT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TT
T ss_pred             CC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cc
Confidence            64 78888888888 67999988 45588888888999999999988887665     6888888889999999988 45


Q ss_pred             CCCCCcccccccccccEEEccCC
Q psy1672         183 LSHFPVRSVEPLLKLMMIELHDN  205 (600)
Q Consensus       183 l~~l~~~~~~~l~~L~~L~l~~N  205 (600)
                      +..+....|..+.+|+.+.+..|
T Consensus       311 i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          311 IRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             CCEECTTTTTTCCSCCEEEECTT
T ss_pred             eEEEhhhhhcCCCCccEEEECcc
Confidence            88888888888888888888655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.18  E-value=4.1e-12  Score=133.91  Aligned_cols=176  Identities=16%  Similarity=0.137  Sum_probs=122.9

Q ss_pred             eEEEccCCCCCcc-----CC-CCCCCCceEEEeeCCCCCCC----Chhh------hcccCCCCccEEEeecccCccc---
Q psy1672          30 QWMECRDKFLITI-----PE-APESELTQVLDMSGNNLQIL----PKEA------FRRAGLLNLQKLFLARCHIGQI---   90 (600)
Q Consensus        30 ~~v~C~~~~L~~i-----p~-~~~~~~l~~L~Ls~n~L~~l----~~~~------f~~~~l~~L~~L~L~~n~l~~i---   90 (600)
                      +.++..+..+...     +. ......+++|+|++|.+..+    |...      +.  .+++|++|+|++|.++..   
T Consensus        35 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~  112 (386)
T 2ca6_A           35 KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL--KCPKLHTVRLSDNAFGPTAQE  112 (386)
T ss_dssp             CEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT--TCTTCCEEECCSCCCCTTTHH
T ss_pred             cEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHh--hCCcccEEECCCCcCCHHHHH
Confidence            4566666655442     11 11123489999999876644    3322      22  688999999999988772   


Q ss_pred             -CccccCCCCCccEEEccCCCCCCCCccccC----CC---------CCCCEEEccCCCCCccC-c---ccccCCCCccee
Q psy1672          91 -DSGALDGLTNLIEIDLSDNLLTSIPSLTFQ----SV---------RFLRDLNLARNPISKIE-K---GAFQFVPGLVKL  152 (600)
Q Consensus        91 -~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~----~l---------~~L~~L~Ls~N~i~~l~-~---~~~~~l~~L~~L  152 (600)
                       .+..|..+++|++|+|++|.|+......+.    .+         ++|++|+|++|.++... +   ..|..+++|+.|
T Consensus       113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  192 (386)
T 2ca6_A          113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV  192 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence             344678889999999999988744332222    23         78999999999887322 2   346678899999


Q ss_pred             eCCCCcCcc-----cChhhhcCCCCCCEEEcCCCcCC-----CCCcccccccccccEEEccCCcCc
Q psy1672         153 DMSESRLEH-----ISPEAFTGAKSLESIKLNGNRLS-----HFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       153 ~Ls~n~l~~-----i~~~~~~~l~~L~~L~Ls~N~l~-----~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      +|++|.|..     +.+..+..+++|+.|+|++|.++     .++ ..+..+++|+.|++.+|.+.
T Consensus       193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHGGGCTTCCEEECTTCCCC
T ss_pred             ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-HHHccCCCcCEEECCCCCCc
Confidence            999998873     22336778899999999999884     333 45677888999999998864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.18  E-value=6.9e-12  Score=129.21  Aligned_cols=174  Identities=18%  Similarity=0.160  Sum_probs=132.5

Q ss_pred             eEEEccCCCCCccCCC-CCCCCceEEEeeCCCCCCC-ChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEcc
Q psy1672          30 QWMECRDKFLITIPEA-PESELTQVLDMSGNNLQIL-PKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLS  107 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~-~~~~~l~~L~Ls~n~L~~l-~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls  107 (600)
                      ..+++.+..+...+.. .....+++|+|++|.+... ....+.  .+++|++|+|++|.++...+..|..+++|++|+|+
T Consensus        73 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~  150 (336)
T 2ast_B           73 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  150 (336)
T ss_dssp             SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             eEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh--hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence            4455555555544432 2224499999999998742 233444  79999999999999887667778999999999999


Q ss_pred             CC-CCCC--CCccccCCCCCCCEEEccCC-CCCcc-CcccccCCC-CcceeeCCCCc--Cc-ccChhhhcCCCCCCEEEc
Q psy1672         108 DN-LLTS--IPSLTFQSVRFLRDLNLARN-PISKI-EKGAFQFVP-GLVKLDMSESR--LE-HISPEAFTGAKSLESIKL  178 (600)
Q Consensus       108 ~N-~l~~--l~~~~f~~l~~L~~L~Ls~N-~i~~l-~~~~~~~l~-~L~~L~Ls~n~--l~-~i~~~~~~~l~~L~~L~L  178 (600)
                      +| .++.  ++ ..+..+++|++|++++| .++.. .+..+..++ +|+.|+|++|.  ++ ...+..+..+++|+.|+|
T Consensus       151 ~~~~l~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          151 GCSGFSEFALQ-TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TCBSCCHHHHH-HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCHHHHH-HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            99 6774  33 34677899999999999 88753 244577888 99999999994  44 222456678999999999


Q ss_pred             CCCc-CCCCCcccccccccccEEEccCCc
Q psy1672         179 NGNR-LSHFPVRSVEPLLKLMMIELHDNP  206 (600)
Q Consensus       179 s~N~-l~~l~~~~~~~l~~L~~L~l~~N~  206 (600)
                      ++|. ++......+..+++|+.|++.+|.
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            9998 665555677888999999999986

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=5.6e-11  Score=99.49  Aligned_cols=91  Identities=26%  Similarity=0.371  Sum_probs=73.0

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....     .+..+..+      +.|.|.+++..|.|.
T Consensus         8 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~-----~~~~~~~~------~~L~i~~v~~~d~G~   76 (100)
T 2edj_A            8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRD-----PRATIQEQ------GTLQIKNLRISDTGT   76 (100)
T ss_dssp             SCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSC-----SSCEECTT------CCEEEESCCTTTCCE
T ss_pred             CCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCC-----CCEEEcCC------CEEEEccCCcccCEE
Confidence            4555556677788899999999999999999999999988765321     12223233      379999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      |+|.|.|..|.....+.|.|..
T Consensus        77 Y~C~a~n~~g~~~~~~~l~V~~   98 (100)
T 2edj_A           77 YTCVATSSSGETSWSAVLDVTE   98 (100)
T ss_dssp             EEEEEECSSCCCBCCEEEEEES
T ss_pred             EEEEEEcCCCCEEEEEEEEEec
Confidence            9999999999998888888854

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.17  E-value=9.6e-11  Score=97.67  Aligned_cols=92  Identities=21%  Similarity=0.342  Sum_probs=72.8

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+....+..|+.++|.|.+.|.|.+.+.|++++..+....     .+.....++   ....|.|.+++..|.|.|
T Consensus         6 P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~-----~~~~~~~~~---~~~~L~i~~~~~~D~G~Y   77 (99)
T 1u2h_A            6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQ-----RRFAEEAEG---GLCRLRILAAERGDAGFY   77 (99)
T ss_dssp             EEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBT-----TEEEEECGG---GEEEEEESSCCGGGCEEE
T ss_pred             CEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCC-----CEEEEECCC---CEEEEEEccCCcCCCEEE
Confidence            455555666788999999999999999999999999998775432     122222222   124799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~  354 (600)
                      +|.|.|..|.....+.|.|.
T Consensus        78 ~C~a~N~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           78 TCKAVNEYGARQCEARLEVR   97 (99)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEECCCceeEEEEEEEE
Confidence            99999999999988888874

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.17  E-value=1.9e-10  Score=97.94  Aligned_cols=97  Identities=19%  Similarity=0.237  Sum_probs=70.0

Q ss_pred             cccccccccccccccccceeeeEeecCCC---CeeEEEEcCeeccCCcccCccceEEEe---eCCceeeeeeEEEecCCC
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPP---AAISWYWNGRLLLNNTAFSSYQRIFVI---EQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~---p~i~W~~~g~~l~~~~~~~~~~~~~~~---~~g~~~~~s~L~I~~v~~  328 (600)
                      |.+...+..+.+..|+.++|.|.+.|.|.   |.|.|++++.......   ...++.+.   ........+.|.|.+++.
T Consensus         5 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   81 (108)
T 3cx2_A            5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSK---VGQHLQLHDSYDRASKVYLFELHITDAQP   81 (108)
T ss_dssp             CSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGG---CBTTEEEEEEEETTTTEEEEEEEECSCCG
T ss_pred             cEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCccccccc---CCceEEEeeEEecccccceEEEEEecCCC
Confidence            44455567788999999999999999998   9999999763221110   11122221   111112356899999999


Q ss_pred             CCCeEEEEEEecCCCceeEEEEEEEE
Q psy1672         329 SDSGRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      .|+|.|+|.|.|..|..++.+.|.|.
T Consensus        82 ~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           82 AFTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ccCEEEEEEEecCCCceEEEEEEEEe
Confidence            99999999999999999999999874

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.17  E-value=1e-10  Score=110.72  Aligned_cols=104  Identities=27%  Similarity=0.415  Sum_probs=62.5

Q ss_pred             cEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcc-cccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCC
Q psy1672         102 IEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKG-AFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNG  180 (600)
Q Consensus       102 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~  180 (600)
                      +.|++++|.|+.+|...+.   +|++|+|++|.++.+.+. .|..+++|+.|+|++|+|+.+.+..|.++++|+.|+|++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            4555556656555543221   456666666666555443 355666666666666666666566666666666666666


Q ss_pred             CcCCCCCcccccccccccEEEccCCcCc
Q psy1672         181 NRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       181 N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      |+|+.++...|..+++|+.|++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~  115 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence            6666666555666666666776666643

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.16  E-value=1.8e-10  Score=99.59  Aligned_cols=97  Identities=24%  Similarity=0.475  Sum_probs=77.9

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+..|+.++|.|.+.|.|.+.+.|++++..+....     .++.+..++.  ....|.|.+++..|+|.
T Consensus        15 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~-----~~~~~~~~~~--~~~~L~I~~v~~~D~G~   87 (116)
T 2kkq_A           15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNT-----DRISLYQDNT--GRVTLLIKDVNKKDAGW   87 (116)
T ss_dssp             CCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCB-----TTEEEEECTT--CEEEEEEEEECGGGCEE
T ss_pred             CCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCC-----CeEEEEeCCC--CeEEEEECCCCcccCEE
Confidence            4566666778889999999999999999999999999998776421     2344444332  23479999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEcc
Q psy1672         334 FYCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      |+|.|.|..|..+..+.|.|...+
T Consensus        88 Y~C~a~N~~G~~~~~~~l~V~~~p  111 (116)
T 2kkq_A           88 YTVSAVNEAGVTTCNTRLDVTARP  111 (116)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECCS
T ss_pred             EEEEEEcCCCeEEEEEEEEEeCCC
Confidence            999999999999998888886543

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.15  E-value=1.2e-10  Score=101.86  Aligned_cols=88  Identities=20%  Similarity=0.294  Sum_probs=68.1

Q ss_pred             ccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeC--CceeeeeeEEEecCCCCCCeEEEEEEecCCCce
Q psy1672         268 SSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ--GEYERKSSLVLTNAQESDSGRFYCVAENRAGIA  345 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~--g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~  345 (600)
                      .+..+.|.|.+.|.|.|+|+|+++|+.+.....    ....+...  +.....++|.|.+++..|+|.|+|+|+|..|.+
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~   89 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSF----IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA   89 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSS----EEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCc----eeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeE
Confidence            566788999999999999999999998875431    11222221  111235789999999999999999999999999


Q ss_pred             eEEEEEEEEEccCC
Q psy1672         346 DANFTLQVTYRGVG  359 (600)
Q Consensus       346 ~~~v~L~V~~~~~~  359 (600)
                      .+++.|.|...+..
T Consensus        90 ~~t~~l~v~~~P~~  103 (126)
T 1he7_A           90 SASIMAAFMDNPFE  103 (126)
T ss_dssp             EEEEEECCCSCTTS
T ss_pred             EEEEEEEEEcCCCC
Confidence            99999988765543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.15  E-value=1.7e-13  Score=130.59  Aligned_cols=135  Identities=21%  Similarity=0.241  Sum_probs=110.0

Q ss_pred             CCCccEEEeecccCcccCc------cccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCC
Q psy1672          74 LLNLQKLFLARCHIGQIDS------GALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVP  147 (600)
Q Consensus        74 l~~L~~L~L~~n~l~~i~~------~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~  147 (600)
                      ...++.++++.+.+....+      ..|..+++|++|+|++|.|+.++  .+..+++|++|+|++|.++.++ ..+..++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIE-NLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCS-SHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccccc-chhhcCC
Confidence            3344444444444433322      27899999999999999999987  6888999999999999999874 4566778


Q ss_pred             CcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc-ccccccccccEEEccCCcCcccccc
Q psy1672         148 GLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV-RSVEPLLKLMMIELHDNPWVCDCNM  213 (600)
Q Consensus       148 ~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~l~~N~~~C~C~l  213 (600)
                      +|+.|+|++|++..++  .+..+++|+.|+|++|.+..++. ..+..+++|+.|++.+|++.|.|..
T Consensus        94 ~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           94 TLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             cCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            9999999999999983  58889999999999999998764 5678899999999999999887653

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.14  E-value=1.6e-10  Score=96.19  Aligned_cols=92  Identities=21%  Similarity=0.314  Sum_probs=73.7

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....      +..+..++   ....|.|.+++..|+|.
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~------~~~~~~~~---~~~~L~i~~~~~~d~G~   76 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGG------KYKLSEDK---GGFFLEIHKTDTSDSGL   76 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSS------SEEEEEET---TEEEEEECSCCGGGCEE
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCC------CEEEEEeC---CEEEEEECCCCcccCEE
Confidence            3455555667788999999999999999999999999998776432      33333332   13479999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |+|.|.|..|.....+.|.|.
T Consensus        77 Y~C~a~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           77 YTCTVKNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEeCCCcEeEEEEEEEE
Confidence            999999999999888888774

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.14  E-value=2.6e-10  Score=120.77  Aligned_cols=167  Identities=20%  Similarity=0.259  Sum_probs=142.5

Q ss_pred             eEEEccCCCCCccCCCCCC-CCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          30 QWMECRDKFLITIPEAPES-ELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~-~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      ..+.- ..+++.|+..... ..|+.+.|.+ .++.|...+|.  ++.+|+.|+|.+|+++.|+..+|. ..+|+.+.|..
T Consensus       138 ~~i~l-~~~i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~--~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~  212 (401)
T 4fdw_A          138 AKVVL-NEGLKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFY--YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV  212 (401)
T ss_dssp             SEEEC-CTTCCEECTTTTTTCCCCEEECCT-TCCEECSSTTT--TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT
T ss_pred             cEEEe-CCCccEECHHhcCCCCceEEEeCC-CccEehHHHhh--CcccCCeeecCCCcceEechhhEe-ecccCEEEeCC
Confidence            34553 3447888764332 2489999986 79999999998  899999999999999999999998 58999999984


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCC----
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLS----  184 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~----  184 (600)
                       .++.|...+|.++.+|+.++|..| ++.+...+|.+ .+|+.+.| .+.++.|...+|.++.+|+.+++.+|.+.    
T Consensus       213 -~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~  288 (401)
T 4fdw_A          213 -TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE  288 (401)
T ss_dssp             -TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred             -chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcc
Confidence             599999999999999999999875 88898899998 78999999 56789999999999999999999988776    


Q ss_pred             -CCCcccccccccccEEEccCC
Q psy1672         185 -HFPVRSVEPLLKLMMIELHDN  205 (600)
Q Consensus       185 -~l~~~~~~~l~~L~~L~l~~N  205 (600)
                       .++...|..+.+|+.+.+.++
T Consensus       289 ~~I~~~aF~~c~~L~~l~l~~~  310 (401)
T 4fdw_A          289 AMIHPYCLEGCPKLARFEIPES  310 (401)
T ss_dssp             CEECTTTTTTCTTCCEECCCTT
T ss_pred             cEECHHHhhCCccCCeEEeCCc
Confidence             688889999999999998754

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=7.1e-11  Score=100.61  Aligned_cols=97  Identities=24%  Similarity=0.495  Sum_probs=76.7

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+..|+.++|.|.+.+.|.+.+.|+++++.+.....    .......++    ...|.|.+++..|.|.
T Consensus         9 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~----~~~~~~~~~----~~~L~i~~v~~~D~G~   80 (110)
T 2dm3_A            9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSA----HKMLVRENG----VHSLIIEPVTSRDAGI   80 (110)
T ss_dssp             CCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSS----EEEEECTTS----CEEEEESSCCGGGCSB
T ss_pred             CCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCc----eEEEEecCC----eEEEEEeeCCcccCEE
Confidence            56666667788899999999999999999999999999887654321    111121222    3479999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEccC
Q psy1672         334 FYCVAENRAGIADANFTLQVTYRGV  358 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~~~  358 (600)
                      |+|.|.|..|..+..+.|.|...+.
T Consensus        81 Y~C~a~n~~g~~~~~~~l~V~~~p~  105 (110)
T 2dm3_A           81 YTCIATNRAGQNSFSLELVVAAKES  105 (110)
T ss_dssp             BCEEEECSSCEEEECCEEEEECCCC
T ss_pred             EEEEEECCCCEEEEEEEEEEeCCCC
Confidence            9999999999999889998876543

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=1.9e-10  Score=98.00  Aligned_cols=97  Identities=21%  Similarity=0.300  Sum_probs=76.1

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+..|+.+.|.|.+.|.|.+.|.|+++++.+....     .+..+..+..  ....|.|.+++..|.|.
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~-----~~~~~~~~~~--~~~~L~i~~v~~~D~G~   80 (110)
T 2dm2_A            8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKS-----DHYTIQRDLD--GTCSLHTTASTLDDDGN   80 (110)
T ss_dssp             CCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTC-----SSEEEEECTT--CEEEEEESSCCTTTCSC
T ss_pred             CCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCC-----CeEEEEECCC--cEEEEEECCCChhhCEE
Confidence            4555556677788999999999999999999999999988775422     2333333211  12479999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEcc
Q psy1672         334 FYCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      |+|.|.|..|..+..+.|.|...+
T Consensus        81 Y~C~a~N~~g~~~~~~~l~V~~~~  104 (110)
T 2dm2_A           81 YTIMAANPQGRISCTGRLMVQAVN  104 (110)
T ss_dssp             CEEEEECTTCCEEECCCEEEECCS
T ss_pred             EEEEEEECCCeEEEEEEEEEECCC
Confidence            999999999999988888886654

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=2.8e-10  Score=98.46  Aligned_cols=94  Identities=19%  Similarity=0.250  Sum_probs=73.0

Q ss_pred             ccccccc---ccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         253 CKPEIRM---DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       253 C~p~i~~---~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ..|.+..   ....+.+..|+.+.|.|.+.|.|.|.+.|+++++.+...       +..+...+   ..+.|.|.+++..
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~-------~~~~~~~~---~~~~L~i~~~~~~   89 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTS-------RVHVRTSD---FDTVFFVRQAARS   89 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCS-------SCEEEECS---SEEEEEESSCCTT
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCC-------cEEEEECC---CeEEEEECCCChh
Confidence            3455543   245677889999999999999999999999999887521       12222221   2357999999999


Q ss_pred             CCeEEEEEEecCCCceeEEEEEEEEEc
Q psy1672         330 DSGRFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       330 d~G~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      |+|.|+|.|.|..|..+..+.|.|..+
T Consensus        90 D~G~Y~C~a~N~~G~~~~~~~l~V~~~  116 (118)
T 2e7c_A           90 DSGEYELSVQIENMKDTATIRIRVVEK  116 (118)
T ss_dssp             TCEEEEEEEECSSCEECCEEEEEEECC
T ss_pred             cCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence            999999999999999998888888654

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=1.6e-10  Score=99.87  Aligned_cols=93  Identities=26%  Similarity=0.393  Sum_probs=75.7

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+..|+.+.|.|.+.|.|.+.+.|++++..+...     ..+..+..++      .|.|.+++.+|.|.
T Consensus         8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~-----~~~~~~~~~~------~L~i~~v~~~D~G~   76 (118)
T 2eo9_A            8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQ-----DSRIKQLENG------VLQIRYAKLGDTGR   76 (118)
T ss_dssp             SCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTT-----STTEEEEETT------EEEEESCCGGGCCC
T ss_pred             CCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCC-----CCeEEEccCC------EEEEccCCcCCCEE
Confidence            455666667788899999999999999999999999998877532     1234344444      79999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEcc
Q psy1672         334 FYCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      |+|.|.|..|.....+.|.|...+
T Consensus        77 Y~C~a~n~~g~~~~~~~l~V~~~~  100 (118)
T 2eo9_A           77 YTCIASTPSGEATWSAYIEVQEFG  100 (118)
T ss_dssp             EEEEEECSSCEEEEECCEEEECCS
T ss_pred             EEEEEEcCCCcEEEEEEEEEEeCC
Confidence            999999999999888888886543

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.11  E-value=1.2e-10  Score=98.89  Aligned_cols=92  Identities=28%  Similarity=0.480  Sum_probs=75.0

Q ss_pred             cccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         253 CKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       253 C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      ..|.+...+..+.+..|+.+.|.|.+.|.|.|.+.|++++..+....      +..+...+   ..+.|.|.+++..|+|
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~------~~~~~~~~---~~~~L~I~~v~~~D~G   83 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA------RHQVTTTK---YKSTFEISSVQASDEG   83 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCS------SEEEEECS---SEEEEEECCCCSSCCS
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCC------CEEEEECC---CEEEEEECcCCchhCE
Confidence            45666677788889999999999999999999999999987765432      33333322   2358999999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEE
Q psy1672         333 RFYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      .|+|.|.|..|..+..+.|.|
T Consensus        84 ~Y~C~a~N~~G~~~~~~~l~V  104 (106)
T 1nct_A           84 NYSVVVENSEGKQEAEFTLTI  104 (106)
T ss_dssp             EEEECCBCSSCBCCEEEEEEE
T ss_pred             EEEEEEEeCCCeEEEEEEEEE
Confidence            999999999999988888877

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=1.2e-10  Score=97.23  Aligned_cols=89  Identities=22%  Similarity=0.422  Sum_probs=71.4

Q ss_pred             cccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         253 CKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       253 C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      ..|.+...+....+..|+.+.|.|.+.|.|.|.+.|+++++.+....      .  ....+    .+.|.|.+++..|.|
T Consensus        10 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~------~--~~~~~----~~~L~i~~v~~~D~G   77 (99)
T 2yr3_A           10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR------S--TCEAG----VAELHIQDALPEDHG   77 (99)
T ss_dssp             EEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCC------C--EEETT----EEEEEECSCCTTCCB
T ss_pred             cCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccc------e--EeeCC----eEEEEECCCChhhCE
Confidence            35666666677888999999999999999999999999988765332      1  11111    357999999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEE
Q psy1672         333 RFYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      .|+|.|.|..|..+..+.|.|
T Consensus        78 ~Y~C~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           78 TYTCLAENALGQVSCSAWVTV   98 (99)
T ss_dssp             CEEEEEECSSCEEEEECCEEE
T ss_pred             EEEEEEEECCCeEEEEEEEEE
Confidence            999999999999888777765

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.11  E-value=5e-10  Score=93.06  Aligned_cols=86  Identities=17%  Similarity=0.315  Sum_probs=69.4

Q ss_pred             cccccccccccccceeeeEeecC-CCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEE
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCV  337 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~  337 (600)
                      ..+..+.+..|+.+.|.|.+.|. |.+.+.|++++..+....      +..+...+   ....|.|.+++..|.|.|+|.
T Consensus         6 ~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~------~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~   76 (97)
T 2bk8_A            6 GQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSE------KYEITYED---GVAILYVKDITKLDDGTYRCK   76 (97)
T ss_dssp             CCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSS------SEEEEEET---TEEEEEECSCCGGGCEEEEEE
T ss_pred             ccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCC------CEEEEEcC---CeEEEEEecCChhhCeEEEEE
Confidence            34567788999999999999997 999999999998776432      23332222   134799999999999999999


Q ss_pred             EecCCCceeEEEEEEE
Q psy1672         338 AENRAGIADANFTLQV  353 (600)
Q Consensus       338 a~N~~G~~~~~v~L~V  353 (600)
                      |.|..|.....+.|.|
T Consensus        77 a~n~~g~~~~~~~l~V   92 (97)
T 2bk8_A           77 VVNDYGEDSSYAELFV   92 (97)
T ss_dssp             EECSSCEEEEEEEEEE
T ss_pred             EECCCCeEeEEEEEEE
Confidence            9999999988888877

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.09  E-value=2.2e-10  Score=97.14  Aligned_cols=93  Identities=19%  Similarity=0.368  Sum_probs=65.3

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....      +..+...     .+.|.|.+++..|.|.
T Consensus        10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~------~~~~~~~-----~~~L~i~~v~~~D~G~   78 (108)
T 3kvq_A           10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS------GIVLKDG-----NRNLTIRRVRKEDEGL   78 (108)
T ss_dssp             -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBT------TEEEETT-----TTEEEECSCCGGGCEE
T ss_pred             CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCC------CeEEeCC-----CcEEEEeecCcccCEE
Confidence            4555556677788999999999999999999999999987765432      2222222     2479999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEcc
Q psy1672         334 FYCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      |+|.|.|..|.....+.|.|...+
T Consensus        79 Y~C~a~n~~g~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           79 YTCQACSVLGCAKVEAFFIIEGAQ  102 (108)
T ss_dssp             EEEEEC----CEEEEEEEEEEC--
T ss_pred             EEEEEEeCCCceEEEEEEEEeCCC
Confidence            999999999999999999886543

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=5e-10  Score=94.17  Aligned_cols=89  Identities=17%  Similarity=0.222  Sum_probs=69.4

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      +.+......+.+.+|+.+.|.|.+  .|.+.+.|+++|+.+....      ++.+..++.   ...|.|.+++.+|.|.|
T Consensus         8 ~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~------r~~i~~~~~---~~~L~I~~v~~~D~G~Y   76 (100)
T 2yuz_A            8 LKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESD------RLKVVQKGR---IHKLVIANALTEDEGDY   76 (100)
T ss_dssp             CCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCS------SEEEEECSS---EEEEEESSCCGGGCSEE
T ss_pred             CEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCC------cEEEEEeCC---EEEEEECCCChhhCEEE
Confidence            445555677888999999999999  7889999999999886433      444444442   34799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEEEc
Q psy1672         335 YCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      +|.|.|.  ..+..+.|.|...
T Consensus        77 ~C~a~N~--~~~~~a~L~V~~~   96 (100)
T 2yuz_A           77 VFAPDAY--NVTLPAKVHVISG   96 (100)
T ss_dssp             EEEESSS--CCCEEEEEEEECC
T ss_pred             EEEEcCC--CeeEEEEEEEeCC
Confidence            9999998  4566677777543

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.08  E-value=3.9e-10  Score=93.51  Aligned_cols=85  Identities=18%  Similarity=0.370  Sum_probs=68.7

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+....+..|+.+.|.|.+.|.| +.+.|+++++.+....      ++.+.       .+.|.|.+++..|+|.|
T Consensus        10 p~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~------~~~~~-------~~~L~i~~~~~~D~G~Y   75 (95)
T 2ckn_A           10 WGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESN------RTRIT-------GEEVEVRDSIPADSGLY   75 (95)
T ss_dssp             CCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCS------SEEEC-------SSEEEESSCCGGGSEEE
T ss_pred             CEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCC------CEEEe-------CCEEEECCCChHHCEEE
Confidence            4445556677889999999999999987 7999999988765432      22221       23799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V  353 (600)
                      +|.|.|..|.....+.|.|
T Consensus        76 ~C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           76 ACVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEeccCCCcEEEEEEEEE
Confidence            9999999999888888876

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.06  E-value=8.5e-10  Score=96.58  Aligned_cols=97  Identities=13%  Similarity=0.215  Sum_probs=71.0

Q ss_pred             ccccccccccccccccceeeeEeecC---CCCeeEEEEcCeeccCCcccCccceEEEe---eCCceeeeeeEEEecCCCC
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSI---PPAAISWYWNGRLLLNNTAFSSYQRIFVI---EQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~---P~p~i~W~~~g~~l~~~~~~~~~~~~~~~---~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+...+..+.+.+|+.++|.|.+.|.   |.|.|.|+++........   ...++.+.   ..........|.|.+++..
T Consensus         9 ~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   85 (126)
T 2dav_A            9 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASK---AGKHLQLKETFERHSRVYTFEMQIIKAKDN   85 (126)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHH---TTSSEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred             EEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCC---CCceEEEccccccccccceEEEEEccCCcc
Confidence            34555778889999999999999875   899999999642110000   01122221   1111123568999999999


Q ss_pred             CCeEEEEEEecCCCceeEEEEEEEEE
Q psy1672         330 DSGRFYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       330 d~G~Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      |+|.|+|.|.|..|..++.+.|.|..
T Consensus        86 DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           86 FAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             SCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             cCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            99999999999999999999999987

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=9.6e-10  Score=95.15  Aligned_cols=96  Identities=16%  Similarity=0.206  Sum_probs=69.9

Q ss_pred             ccccccccccccccccceeeeEeecC---CCCeeEEEEcCee-ccCCcccCccceEEEe---eCCceeeeeeEEEecCCC
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSI---PPAAISWYWNGRL-LLNNTAFSSYQRIFVI---EQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~---P~p~i~W~~~g~~-l~~~~~~~~~~~~~~~---~~g~~~~~s~L~I~~v~~  328 (600)
                      .+...+..+.+.+|+.++|.|.+.|.   |.|.|.|+++... +....    ..++.+.   ..........|.|.+++.
T Consensus        14 ~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~I~~v~~   89 (118)
T 2edn_A           14 VFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKS----GARFSFKESHNSASNVYTVELHIGKVVL   89 (118)
T ss_dssp             SCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCST----TSSCEEEEEECSSSCEEEEEEEESSCCT
T ss_pred             eEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCC----ccEEEeccccccccccceEEEEEeeCCh
Confidence            34445678889999999999999875   7899999996422 11111    1122221   111122356899999999


Q ss_pred             CCCeEEEEEEecCCCceeEEEEEEEEE
Q psy1672         329 SDSGRFYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      .|.|.|+|.|.|..|..++.+.|.|..
T Consensus        90 ~D~G~Y~Cevsn~~g~~s~~~~L~V~~  116 (118)
T 2edn_A           90 GDRGYYRLEVKAKDTCDSCGFNIDVEA  116 (118)
T ss_dssp             TTCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred             hhCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence            999999999999999999999998853

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.04  E-value=4.6e-11  Score=128.49  Aligned_cols=60  Identities=27%  Similarity=0.234  Sum_probs=25.2

Q ss_pred             ceEEEeeCCCCCCCChh-hhcccCCCCccEEEeecccCcccC----ccccCCCCCccEEEccCCCCC
Q psy1672          51 TQVLDMSGNNLQILPKE-AFRRAGLLNLQKLFLARCHIGQID----SGALDGLTNLIEIDLSDNLLT  112 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~-~f~~~~l~~L~~L~L~~n~l~~i~----~~~f~~l~~L~~L~Ls~N~l~  112 (600)
                      +++|+|++|+++..... .+.  .+++|+.|+|++|+++...    +.+|..+++|++|+|++|.++
T Consensus         5 l~~L~Ls~~~l~~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~   69 (461)
T 1z7x_W            5 IQSLDIQCEELSDARWAELLP--LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   69 (461)
T ss_dssp             EEEEEEESCCCCHHHHHHHHH--HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             ceehhhhhcccCchhHHHHHh--hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC
Confidence            44455554444432221 122  3444555555554443211    223344444555555444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.03  E-value=1.5e-11  Score=132.31  Aligned_cols=155  Identities=16%  Similarity=0.144  Sum_probs=94.4

Q ss_pred             ceEEEeeCCCCCCCC----hhhhcccCCCCccEEEeecccCcccC-----ccccCCCCCccEEEccCCCCCC-----CCc
Q psy1672          51 TQVLDMSGNNLQILP----KEAFRRAGLLNLQKLFLARCHIGQID-----SGALDGLTNLIEIDLSDNLLTS-----IPS  116 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~----~~~f~~~~l~~L~~L~L~~n~l~~i~-----~~~f~~l~~L~~L~Ls~N~l~~-----l~~  116 (600)
                      +++|++++|.++...    ...+.  .+++|++|+|++|.++...     +..+..+++|++|+|++|.|+.     ++.
T Consensus       201 L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          201 LEALKLESCGVTSDNCRDLCGIVA--SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             CCEEECTTSCCBTTHHHHHHHHHH--HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ceEEEccCCCCcHHHHHHHHHHHH--hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence            888888888887632    12222  5778888888888776532     2333457788888888887776     333


Q ss_pred             cccCCCCCCCEEEccCCCCCccCccccc-----CCCCcceeeCCCCcCcccC----hhhhcCCCCCCEEEcCCCcCCCCC
Q psy1672         117 LTFQSVRFLRDLNLARNPISKIEKGAFQ-----FVPGLVKLDMSESRLEHIS----PEAFTGAKSLESIKLNGNRLSHFP  187 (600)
Q Consensus       117 ~~f~~l~~L~~L~Ls~N~i~~l~~~~~~-----~l~~L~~L~Ls~n~l~~i~----~~~~~~l~~L~~L~Ls~N~l~~l~  187 (600)
                       .+..+++|++|+|++|.+.......+.     ..++|+.|+|++|.++...    +..+..+++|+.|+|++|.+....
T Consensus       279 -~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  357 (461)
T 1z7x_W          279 -VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG  357 (461)
T ss_dssp             -HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred             -HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence             355567777888877777543222222     2356777777777766542    233445667777777777665543


Q ss_pred             cccccc-----cccccEEEccCCcCc
Q psy1672         188 VRSVEP-----LLKLMMIELHDNPWV  208 (600)
Q Consensus       188 ~~~~~~-----l~~L~~L~l~~N~~~  208 (600)
                      ...+..     .+.|+.|++.+|.+.
T Consensus       358 ~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          358 VRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHHHHHcCCCCceEEEECCCCCCC
Confidence            222221     346667777666543

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.02  E-value=1e-09  Score=99.89  Aligned_cols=96  Identities=21%  Similarity=0.331  Sum_probs=76.0

Q ss_pred             cccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         253 CKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       253 C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      ..|.+...+..+.+..|+.++|.|.+.|.|.+.+.|+++++.+....      +..+.....  ..+.|.|.+++..|.|
T Consensus        40 ~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~------~~~~~~~~~--~~~~L~I~~v~~~D~G  111 (154)
T 1fhg_A           40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESR------HFQIDYDEE--GNCSLTISEVCGDDDA  111 (154)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSS------SEEEEECTT--CEEEEEESSCCGGGCE
T ss_pred             CCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCC------cEEEEECCC--CeEEEEECCCChhcCE
Confidence            35666666677888999999999999999999999999998776432      233322111  1358999999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEEEEc
Q psy1672         333 RFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      .|+|.|.|..|.....+.|.|...
T Consensus       112 ~Y~C~a~N~~G~~~~~~~l~V~~~  135 (154)
T 1fhg_A          112 KYTCKAVNSLGEATCTAELLVETM  135 (154)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEEEEECCCeEEEEEEEEEeCc
Confidence            999999999999998888888644

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.02  E-value=5.2e-10  Score=93.39  Aligned_cols=84  Identities=24%  Similarity=0.427  Sum_probs=66.6

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..+.+..|+.+.|.|.+.|.|.+.+.|++++..+.......   .......     .+.|.|.+++..|+|.|+|.|.|.
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~---~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~N~   87 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKVRNQ-----HWSLIMESVVPSDKGNYTCVVENE   87 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTT---CCEEEGG-----GTEEEECSCCGGGCEEEEEEEEET
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccc---cEEEecC-----eEEEEEccCCcCCCEEEEEEEEeC
Confidence            45678899999999999999999999999998776533211   1111111     247999999999999999999999


Q ss_pred             CCceeEEEEEEE
Q psy1672         342 AGIADANFTLQV  353 (600)
Q Consensus       342 ~G~~~~~v~L~V  353 (600)
                      .|.....+.|.|
T Consensus        88 ~g~~~~~~~l~V   99 (100)
T 3caf_A           88 YGSINHTYHLDV   99 (100)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999888888776

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.01  E-value=7.9e-10  Score=90.79  Aligned_cols=81  Identities=15%  Similarity=0.291  Sum_probs=65.3

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      +.+...+....+..|+.+.|.|.+.|.|.|.+.|+++++.+....                  ...|.|.+++..|+|.|
T Consensus         4 ~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~------------------~~~L~i~~v~~~d~G~Y   65 (91)
T 3bfo_A            4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET------------------KKLYMVPYVDLEHQGTY   65 (91)
T ss_dssp             CEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC------------------SSEEEESSCCGGGCEEE
T ss_pred             eEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC------------------CCeEEECCCCHHhCEEE
Confidence            344455666778899999999999999999999999988765432                  13799999999999999


Q ss_pred             EEEEecCCCcee-EEEEEEE
Q psy1672         335 YCVAENRAGIAD-ANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~~-~~v~L~V  353 (600)
                      +|.|.|..|... ..+.|.|
T Consensus        66 ~C~a~n~~g~~~s~~~~l~V   85 (91)
T 3bfo_A           66 WCHVYNDRDSQDSKKVEIII   85 (91)
T ss_dssp             EEEEECSSCEEECCCEEEEE
T ss_pred             EEEEEcCCCCEEeeeEEEEE
Confidence            999999999754 4466665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.98  E-value=2.9e-11  Score=126.85  Aligned_cols=159  Identities=14%  Similarity=0.161  Sum_probs=117.5

Q ss_pred             CceEEEeeCCCCCCCChhhhccc---CCCCccEEEeecccCcccCcccc-CCCCCccEEEccCCCCCCCCcccc-----C
Q psy1672          50 LTQVLDMSGNNLQILPKEAFRRA---GLLNLQKLFLARCHIGQIDSGAL-DGLTNLIEIDLSDNLLTSIPSLTF-----Q  120 (600)
Q Consensus        50 ~l~~L~Ls~n~L~~l~~~~f~~~---~l~~L~~L~L~~n~l~~i~~~~f-~~l~~L~~L~Ls~N~l~~l~~~~f-----~  120 (600)
                      .++.|+|++|.|+......+...   ...+|+.|+|++|.++......+ ..+.+|++|+|++|.|+......+     .
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            38999999999986544433311   33699999999999865433222 346689999999999986443333     3


Q ss_pred             CCCCCCEEEccCCCCCccCc----ccccCCCCcceeeCCCCcCcccC----hhhhcCCCCCCEEEcCCCcCCCCCcc---
Q psy1672         121 SVRFLRDLNLARNPISKIEK----GAFQFVPGLVKLDMSESRLEHIS----PEAFTGAKSLESIKLNGNRLSHFPVR---  189 (600)
Q Consensus       121 ~l~~L~~L~Ls~N~i~~l~~----~~~~~l~~L~~L~Ls~n~l~~i~----~~~~~~l~~L~~L~Ls~N~l~~l~~~---  189 (600)
                      ..++|++|+|++|.|+....    ..+..+++|+.|+|++|.|....    ...+....+|+.|+|++|.|+.....   
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            46789999999999876432    23467889999999999998654    34566788999999999999865432   


Q ss_pred             -cccccccccEEEccCCcCc
Q psy1672         190 -SVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       190 -~~~~l~~L~~L~l~~N~~~  208 (600)
                       .+...+.|+.|++++|++.
T Consensus       233 ~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHhCCCCCEEeccCCCCC
Confidence             2344578999999999865

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.98  E-value=1.3e-09  Score=88.43  Aligned_cols=78  Identities=22%  Similarity=0.474  Sum_probs=60.7

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..+.+..|+.+.|.|.+.+ |.|.|.|+++|+.+....      ++.+..++.   ...|.|.+++..|.|.|+|.|.|.
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~------~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~n~   73 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQG------RVQLEQAGA---RQVLRVQGARSGDAGEYLCDAPQD   73 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCS------SEEEEECSS---CEEEEESSCSSTTCEEEEEECTTT
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccc------cEEEeecCC---eEEEEecCCCCcccEEEEEEECCE
Confidence            4567889999999999966 889999999999886543      344444442   247999999999999999998664


Q ss_pred             CCceeEEEEEEE
Q psy1672         342 AGIADANFTLQV  353 (600)
Q Consensus       342 ~G~~~~~v~L~V  353 (600)
                          ...+.|.|
T Consensus        74 ----~~~a~l~V   81 (84)
T 2lu7_A           74 ----SRIFLVSV   81 (84)
T ss_dssp             ----CEEEEEEE
T ss_pred             ----EEEEEEEE
Confidence                55566666

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=98.97  E-value=1.1e-09  Score=90.64  Aligned_cols=85  Identities=26%  Similarity=0.304  Sum_probs=64.1

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      +.+......+.+.+|+.++|.|.+.+ +.+.+.|+++|+.+....      ++.+..++.   ...|.|.+++.+|+|.|
T Consensus         6 ~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~------~~~i~~~g~---~~~L~I~~v~~~D~G~Y   75 (93)
T 1waa_A            6 IEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASP------DCEIIEDGK---KHILILHNCQLGMTGEV   75 (93)
T ss_dssp             CCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBT------TEEEEEETT---EEEEEECSCCGGGCEEE
T ss_pred             cEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCC------CEEEEEECC---EEEEEECCCChhhCEEE
Confidence            44455566788999999999999986 557899999999886433      344444432   24799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V  353 (600)
                      +|.|.|.    ..+..|.|
T Consensus        76 ~C~a~n~----~~sa~L~V   90 (93)
T 1waa_A           76 SFQAANT----KSAANLKV   90 (93)
T ss_dssp             EEEETTE----EEEEEEEE
T ss_pred             EEEECCC----cEEEEEEE
Confidence            9999985    34455555

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.97  E-value=2.2e-10  Score=99.75  Aligned_cols=98  Identities=26%  Similarity=0.357  Sum_probs=73.8

Q ss_pred             cccccccccccccccccccceeeeEeecCCCCe-eEEEEcCeeccCCcccCccceEEEeeC-CceeeeeeEEEecCCCCC
Q psy1672         253 CKPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQ-GEYERKSSLVLTNAQESD  330 (600)
Q Consensus       253 C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~~~-g~~~~~s~L~I~~v~~~d  330 (600)
                      ..|.+.. +....+..|+.+.|.|.+.|.|.|. |.|+++++.+....    ..++.+... ......+.|.|.+++..|
T Consensus        13 ~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~L~I~~v~~~D   87 (122)
T 2cry_A           13 GPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT----SGRYTVETISTEEGVISTLTISNIVRAD   87 (122)
T ss_dssp             SSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEE----ETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             cCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCC----CCCEEEEEecCCCceEEEEEEcCCChhh
Confidence            3455555 6677889999999999999999987 99999988776421    123333211 001124589999999999


Q ss_pred             C-eEEEEEEecCCCceeEEEEEEEEE
Q psy1672         331 S-GRFYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       331 ~-G~Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      . |.|+|.|.|..|.+...+.|.|..
T Consensus        88 ~~G~Y~C~a~N~~G~~~~~~~l~V~~  113 (122)
T 2cry_A           88 FQTIYNCTAWNSFGSDTEIIRLKEQG  113 (122)
T ss_dssp             HHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             CCceEEEEEECCCCeEEEEEEEEECC
Confidence            9 999999999999999888887754

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=98.94  E-value=3.4e-09  Score=89.37  Aligned_cols=98  Identities=18%  Similarity=0.228  Sum_probs=70.5

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCe-eccC-CcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGR-LLLN-NTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~-~l~~-~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      |.+...+..+.+..|+.++|.|.+.+.|.+.+.|++++. .+.. ........++.+.....  ....|.|.+++.+|+|
T Consensus         7 p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~L~I~~v~~~D~G   84 (108)
T 3m45_A            7 QGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASW--HELSISVSDVSLSDEG   84 (108)
T ss_dssp             -CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESS--SEEEEEECSCCGGGCE
T ss_pred             CCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCC--CcEEEEECCCChhHCe
Confidence            455556677889999999999999999999999999765 2211 11111122333322211  2468999999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEEEE
Q psy1672         333 RFYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      .|+|.|.| .|..+..+.|.|..
T Consensus        85 ~Y~C~~~n-~~~~~~~~~L~V~~  106 (108)
T 3m45_A           85 QYTCSLFT-MPVKTSKAYLTVLG  106 (108)
T ss_dssp             EEEEEECS-SSCEEEEEEEEEEC
T ss_pred             EEEEEEEc-CCCcEEEEEEEEEc
Confidence            99999999 88888888888854

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.94  E-value=2.1e-09  Score=93.21  Aligned_cols=96  Identities=13%  Similarity=0.125  Sum_probs=67.8

Q ss_pred             ccccccccccceeeeEeec--CCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         262 RYVEAVSSENATVVCRVDS--IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g--~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      ..+.+..|+.++|.|.+.|  .|.+.+.|++++..+......... +............+.|.|.+++.+|+|.|+|.|.
T Consensus        16 ~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   94 (122)
T 3s35_X           16 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD-LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS   94 (122)
T ss_dssp             SCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCS-CCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeec-cccccCCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence            4457889999999999998  445689999987643211000000 1111111112245689999999999999999999


Q ss_pred             cCCCceeEEEEEEEEEccC
Q psy1672         340 NRAGIADANFTLQVTYRGV  358 (600)
Q Consensus       340 N~~G~~~~~v~L~V~~~~~  358 (600)
                      |..|...+.+.|.|..++.
T Consensus        95 n~~g~~~~~~~l~V~~~p~  113 (122)
T 3s35_X           95 SGLMTKKNSTFVRVHEKPF  113 (122)
T ss_dssp             CSSCEEEEEEEEEEEEEEC
T ss_pred             cCCCceEEEEEEEEeccCe
Confidence            9999999999999976653

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=98.93  E-value=2.8e-09  Score=90.15  Aligned_cols=99  Identities=19%  Similarity=0.341  Sum_probs=68.5

Q ss_pred             ccccccccccccccccccceeeeEeecC--CCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSI--PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~--P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      .|.+...+....+..|+.++|.|.+.+.  +.+.+.|++++..+...... ...+............+.|.|.+++..|.
T Consensus        10 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   88 (112)
T 3so5_A           10 XPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEME-NYAHLRAQGGELMEYTTILRLRNVEFTSE   88 (112)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEE-EEEETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred             CCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCccccccccc-ceeeeeccCCCccccceEEEEeccccccC
Confidence            4556666677788999999999999954  46899999999877543200 00000000011112346899999999999


Q ss_pred             eEEEEEEecCCCc-eeEEEEEEE
Q psy1672         332 GRFYCVAENRAGI-ADANFTLQV  353 (600)
Q Consensus       332 G~Y~C~a~N~~G~-~~~~v~L~V  353 (600)
                      |.|+|.|.|..|. .+..+.|.|
T Consensus        89 G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           89 GXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEE
T ss_pred             CeEEEEEEeCCCcEEEeEEEEEe
Confidence            9999999999998 346666655

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=2.3e-09  Score=89.57  Aligned_cols=81  Identities=19%  Similarity=0.364  Sum_probs=65.6

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +..+.+..|+.++|.|.+.+.| |.+.|++++..+....      ++.+. .      ..|.|.+++..|+|.|+|.|.|
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~------~~~~~-~------~~L~i~~v~~~D~G~Y~C~a~n   75 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESN------RTRIT-G------EEVEVQDSVPADSGLYACVTSS   75 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCS------SEEEC-S------SEEEETTCCTTTCEEEEEEEEE
T ss_pred             CcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCC------cEEEE-C------CEEEEccCCHHHCEEEEEEEEe
Confidence            4567788999999999999977 7999999987765322      22222 2      3799999999999999999999


Q ss_pred             CCCceeEEEEEEEEE
Q psy1672         341 RAGIADANFTLQVTY  355 (600)
Q Consensus       341 ~~G~~~~~v~L~V~~  355 (600)
                      ..|.....+.|.|..
T Consensus        76 ~~g~~~~~~~l~V~~   90 (99)
T 2cr3_A           76 PSGSDTTYFSVNVSD   90 (99)
T ss_dssp             TTEEEEEEEEECBCS
T ss_pred             CCceEEEEEEEEEec
Confidence            999988888887754

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.92  E-value=5.3e-09  Score=90.31  Aligned_cols=84  Identities=17%  Similarity=0.302  Sum_probs=64.8

Q ss_pred             ccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEE
Q psy1672         270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANF  349 (600)
Q Consensus       270 ~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v  349 (600)
                      ....|.|.+.|.|.|.+.|+++|+.+....    ..+......+ ....+.|.|.+++..|.|.|+|.|.|..|.+++.+
T Consensus        21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~----~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~   95 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESK----IIHVEYYQEG-EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTI   95 (118)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSS----SEEEEEEECS-SEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cceEEEEEeeeeCCCeEEEEECCEECCCCC----ceeEEEeccC-ccccEEEEECCCChhcCEEEEEEEECCCCeEeeEE
Confidence            456789999999999999999998876543    1122222221 12356899999999999999999999999999998


Q ss_pred             EEEEEEccC
Q psy1672         350 TLQVTYRGV  358 (600)
Q Consensus       350 ~L~V~~~~~  358 (600)
                      .|.|...+.
T Consensus        96 ~l~v~~~P~  104 (118)
T 1wwc_A           96 NGHFLKEPF  104 (118)
T ss_dssp             EECCSCCCC
T ss_pred             EEEEccCCC
Confidence            887765543

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.92  E-value=3.7e-09  Score=87.88  Aligned_cols=79  Identities=22%  Similarity=0.338  Sum_probs=62.8

Q ss_pred             cccccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         261 SRYVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      +..+.+..|+.++|.|.+. +.|.+.+.|++++.......       . ...+      +.|.|.+++.+|+|.|+|.|.
T Consensus        17 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~-------~-~~~~------~~L~i~~v~~~D~G~Y~C~a~   82 (98)
T 1gl4_B           17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-------A-MDFN------GILTIRNVQPSDAGTYVCTGS   82 (98)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT-------E-EEET------TEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce-------e-ecCC------CEEEEeCCChhhCEEEEEEec
Confidence            4566788999999999999 78999999999653322111       1 1122      379999999999999999999


Q ss_pred             cCCCceeEEEEEEE
Q psy1672         340 NRAGIADANFTLQV  353 (600)
Q Consensus       340 N~~G~~~~~v~L~V  353 (600)
                      |..|..+..+.|.|
T Consensus        83 n~~g~~~~~~~l~V   96 (98)
T 1gl4_B           83 NMFAMDQGTATLHV   96 (98)
T ss_dssp             CSSCEEEEEEEEEE
T ss_pred             CCCCccccEEEEEE
Confidence            99999988888877

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.91  E-value=9.3e-10  Score=105.43  Aligned_cols=79  Identities=19%  Similarity=0.346  Sum_probs=63.8

Q ss_pred             ccccccccceeeeEeecC-CCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         264 VEAVSSENATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ..+.+|+.+.|.|.+.|. |.|+|.|+++++.+.....+       ...+    ....|.|.+++.+|.|.|+|.|.|..
T Consensus       126 ~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~-------~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~  194 (207)
T 3rbs_A          126 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH-------DFKD----GICTLLITEFSKKDAGIYEVILKDDR  194 (207)
T ss_dssp             EEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCC-------CCSS----EEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             cEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCce-------EcCC----CEEEEEECCCCcccCEEEEEEEEcCC
Confidence            456789999999999998 99999999999988653311       0011    23469999999999999999999999


Q ss_pred             CceeEEEEEEE
Q psy1672         343 GIADANFTLQV  353 (600)
Q Consensus       343 G~~~~~v~L~V  353 (600)
                      |.++..+.|..
T Consensus       195 G~~~~~~~L~~  205 (207)
T 3rbs_A          195 GKDKSRLKLVD  205 (207)
T ss_dssp             EEEEEEEEECC
T ss_pred             CEEEEEEEEec
Confidence            99988877753

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=98.90  E-value=3.9e-09  Score=93.75  Aligned_cols=98  Identities=13%  Similarity=0.201  Sum_probs=68.8

Q ss_pred             cccCcccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccC----ccceEEEeeCCceeeeeeEEEe
Q psy1672         249 DDFACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFS----SYQRIFVIEQGEYERKSSLVLT  324 (600)
Q Consensus       249 ~~~~C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~----~~~~~~~~~~g~~~~~s~L~I~  324 (600)
                      ....+.|.+...+..+.+..|+.++|.|.+.|.|.|.|.|++++..+.......    ...+..+.........+.|.|.
T Consensus        16 ~~~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~   95 (137)
T 3qr2_A           16 PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISID   95 (137)
T ss_dssp             -----CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEEC
T ss_pred             CCCCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEEC
Confidence            344567888888888899999999999999999999999999776553221000    0112222211111234689999


Q ss_pred             cCCCCCCeEEEEEEecCCCcee
Q psy1672         325 NAQESDSGRFYCVAENRAGIAD  346 (600)
Q Consensus       325 ~v~~~d~G~Y~C~a~N~~G~~~  346 (600)
                      +++..|+|.|+|.|.|..|...
T Consensus        96 ~v~~~D~G~Y~C~a~N~~G~~~  117 (137)
T 3qr2_A           96 TLVEEDTGTYECRASNDPDRNH  117 (137)
T ss_dssp             SCCGGGCEEEEEEEECCTTSSS
T ss_pred             CCCcccCEEEEEEEEecCCccc
Confidence            9999999999999999999864

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.90  E-value=8.2e-09  Score=86.76  Aligned_cols=89  Identities=18%  Similarity=0.371  Sum_probs=66.6

Q ss_pred             cccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      +...+..+.+..|+.++|.|.+.+ |.+.+.|+++++.+.....+    +..+..++.   ...|.|.+++..|.|.|+|
T Consensus        10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~----~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C   81 (103)
T 1x44_A           10 VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKS----RYRIRVEGK---KHILIIEGATKADAAEYSV   81 (103)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTC----SEEEEEETT---EEEEEEEEECTTTCSEEEE
T ss_pred             eeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCce----EEEEEEcCC---EEEEEECCCCcccCEEEEE
Confidence            344456678889999999999987 77999999999887654311    333333331   3479999999999999999


Q ss_pred             EEecCCCceeEEEEEEEEEcc
Q psy1672         337 VAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       337 ~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      .|.|    ....+.|.|...+
T Consensus        82 ~a~n----~~~~~~l~V~~~p   98 (103)
T 1x44_A           82 MTTG----GQSSAKLSVDLKS   98 (103)
T ss_dssp             EETT----EEEEEEEEEECCC
T ss_pred             EECC----CcEEEEEEEeCCC
Confidence            9998    4666777776544

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=1.4e-09  Score=90.25  Aligned_cols=81  Identities=19%  Similarity=0.348  Sum_probs=62.8

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      +.+...+....+..|+.++|.|.+.+.|.+.+.|+++++.+....                  ...|.|.+++..|.|.|
T Consensus        11 ~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~------------------~~~L~i~~v~~~d~G~Y   72 (96)
T 2ens_A           11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP------------------SPVLILPEIGPQDQGTY   72 (96)
T ss_dssp             CCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC------------------CSEEEEESCCTTTCEEE
T ss_pred             CEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC------------------CCEEEECCCCcccCEEE
Confidence            444455566778899999999999999999999999887665321                  13799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V  353 (600)
                      +|.|.|..|....+..+.+
T Consensus        73 ~C~a~n~~~~~~~s~~~~v   91 (96)
T 2ens_A           73 SCVATHSSHGPQESRAVSI   91 (96)
T ss_dssp             ECEECCSSCCCEECCCEEE
T ss_pred             EEEEEeCCCCcEEEEEEEE
Confidence            9999997665444433333

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=4.8e-09  Score=88.08  Aligned_cols=90  Identities=17%  Similarity=0.320  Sum_probs=68.3

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+..|+.+.|.|.+.+ |.+.+.|+++++.+....      +..+..++.   ...|.|.+++..|.|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~------~~~~~~~~~---~~~L~I~~v~~~D~G~   77 (103)
T 2edf_A            8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQ------KYDVVCEGT---MAMLVIRGASLKDAGE   77 (103)
T ss_dssp             CCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSS------SEEEEEETT---EEEEEESSCCTTTCSE
T ss_pred             CcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCC------CEEEEECCC---EEEEEECCCCcccCEE
Confidence            345555566788899999999999997 888999999998775432      344443332   3479999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEcc
Q psy1672         334 FYCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      |+|.|.|    ....+.|.|...+
T Consensus        78 Y~C~a~n----~~~~~~l~V~~~p   97 (103)
T 2edf_A           78 YTCEVEA----SKSTASLHVEEKA   97 (103)
T ss_dssp             EEEECSS----CEEEEEEEECCCS
T ss_pred             EEEEEcc----CCcEEEEEEeCCC
Confidence            9999999    3666777775543

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=98.88  E-value=2.4e-09  Score=92.18  Aligned_cols=99  Identities=23%  Similarity=0.374  Sum_probs=68.7

Q ss_pred             cccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         253 CKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       253 C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      ..|.+...+..+.+..|+.++|.|.+.|.|.|.+.|++++..+....... ..+.....++.. ....+.+.+++..|.|
T Consensus         8 ~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~i~~~~v~~~D~G   85 (117)
T 2v9t_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDP-RSHRMLLPSGSL-FFLRIVHGRKSRPDEG   85 (117)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCS-SCSEEECTTSCE-EESSCCCBTTBCSSCE
T ss_pred             CCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCC-cceeEEecCCcE-EEEEEEeCCCCcCcCE
Confidence            45666666777888999999999999999999999999998776443111 112223333311 1122334467899999


Q ss_pred             EEEEEEecCCCceeE-EEEEEE
Q psy1672         333 RFYCVAENRAGIADA-NFTLQV  353 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~-~v~L~V  353 (600)
                      .|+|.|.|..|.... .+.+.+
T Consensus        86 ~Y~C~a~N~~G~~~s~~~~l~~  107 (117)
T 2v9t_A           86 VYVCVARNYLGEAVSHDASLEV  107 (117)
T ss_dssp             EEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEEeCccceEeeeEEEEh
Confidence            999999999998754 355555

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.88  E-value=6.5e-09  Score=97.16  Aligned_cols=94  Identities=27%  Similarity=0.421  Sum_probs=71.6

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEE--cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCC-CCCC
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ-ESDS  331 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~-~~d~  331 (600)
                      |.+...+....+..|+.+.|.|.+.|.|.+.+.|++  ++..+....   ...++.+..++.   .+.|.|.+++ ..|.
T Consensus        93 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~---~~~~~~~~~~~~---~~~L~i~~~~~~~d~  166 (190)
T 2wv3_A           93 PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISN---SSGRFFIINKEN---YTELNIVNLQITEDP  166 (190)
T ss_dssp             CEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCC---TTSCEEEEECSS---EEEEEECSCCTTTSC
T ss_pred             CcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeec---CCCeEEEecCCC---eeEEEEEeccccCCC
Confidence            444444455667889999999999999999999999  676654221   123444444332   3479999999 7999


Q ss_pred             eEEEEEEecCCCceeEEEEEEEE
Q psy1672         332 GRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       332 G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |.|+|.|.|..|.....+.|.|.
T Consensus       167 G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          167 GEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEEEEEecCCcceeEEEEEEE
Confidence            99999999999999988888774

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=98.87  E-value=4.8e-09  Score=86.49  Aligned_cols=68  Identities=34%  Similarity=0.627  Sum_probs=53.6

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      +.+..|+.+.|.|.+.+ |.+.+.|+++|+.+....      ++.+..++.   ...|.|.+++.+|.|.|+|.|.|.
T Consensus        16 v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~------~~~i~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           16 VHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESD------FVVLENEGP---HRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             EECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCS------SCEEEEETT---EEEEEESSCCGGGCSEEEEECSSC
T ss_pred             EEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeee------eeeEEecCC---eEEEEeCCCChhhcEEEEEEEcce
Confidence            45678999999999965 888999999998886543      333333332   247999999999999999999775

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.87  E-value=4.2e-09  Score=89.05  Aligned_cols=89  Identities=22%  Similarity=0.324  Sum_probs=66.7

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+..|+.+.|.|.+.+.|.+ +.|+++++.+....      ++.+..++.   ...|.|.+++.+|.|.
T Consensus         8 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~------~~~~~~~~~---~~~L~I~~v~~~D~G~   77 (106)
T 2dlt_A            8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSK------RITISHVGR---FHKLVIDDVRPEDEGD   77 (106)
T ss_dssp             CCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCS------SCEEEEETT---EEEEEESSCCTTTCSC
T ss_pred             CCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCC------CEEEEEeCC---EEEEEECCCCcCCCEE
Confidence            4555666677889999999999999998888 99999998775433      223333331   2479999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |+|.|.|..  ....+.|.|.
T Consensus        78 Y~C~a~n~~--~~~~~~l~V~   96 (106)
T 2dlt_A           78 YTFVPDGYA--LSLSAKLNFL   96 (106)
T ss_dssp             EEEEEETSC--CCCCBCEEEE
T ss_pred             EEEEEccCC--ceEEEEEEEE
Confidence            999999983  3344455554

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=8.2e-09  Score=86.79  Aligned_cols=88  Identities=25%  Similarity=0.451  Sum_probs=64.4

Q ss_pred             ccccccccc---ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         255 PEIRMDSRY---VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       255 p~i~~~~~~---~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      |.+...+..   +.+..|+.++|.|.+.+.|.+ +.|+++++.+....      +..+..++   ....|.|.+++..|+
T Consensus         8 P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~------~~~~~~~~---~~~~L~I~~~~~~D~   77 (104)
T 2e6p_A            8 PVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESE------LLVVKMDG---RKHRLILPEAKVQDS   77 (104)
T ss_dssp             SCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBT------TBEEEEET---TEEEEEESSCCTTTC
T ss_pred             CCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCC------CEEEEeCC---CEEEEEECCCChhhC
Confidence            344444444   678899999999999999988 99999998776433      22232222   134799999999999


Q ss_pred             eEEEEEEecCCCceeEEEEEEEEEc
Q psy1672         332 GRFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       332 G~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      |.|+|.|.|..+    .+.|.|...
T Consensus        78 G~Y~C~a~n~~~----~~~l~V~~~   98 (104)
T 2e6p_A           78 GEFECRTEGVSA----FFGVTVQDP   98 (104)
T ss_dssp             EEEEEECSSCCC----CEEEEEECC
T ss_pred             EEEEEEECCceE----EEEEEEcCC
Confidence            999999999854    455555544

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=98.84  E-value=1.3e-08  Score=84.11  Aligned_cols=85  Identities=18%  Similarity=0.337  Sum_probs=64.3

Q ss_pred             ccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      .+...+..+.+..|+.+.|.|.+ +.|.+.+.|++++..+....      ++.+..++.   ...|.|.+++..|.|.|+
T Consensus        10 ~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~------~~~~~~~~~---~~~L~I~~v~~~D~G~Y~   79 (95)
T 2k1m_A           10 AFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASN------KYGLATEGT---RHTLTVREVGPADQGSYA   79 (95)
T ss_dssp             CCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSST------TCEEEEETT---EEEEEESSCCTTCCSEEE
T ss_pred             eeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCC------cEEEEEcCC---EEEEEEcCCCcccCEEEE
Confidence            34444567788999999999999 88889999999998776433      223333332   247999999999999999


Q ss_pred             EEEecCCCceeEEEEEEEE
Q psy1672         336 CVAENRAGIADANFTLQVT  354 (600)
Q Consensus       336 C~a~N~~G~~~~~v~L~V~  354 (600)
                      |.|    |.....+.|.|.
T Consensus        80 C~a----g~~~~~~~l~V~   94 (95)
T 2k1m_A           80 VIA----GSSKVKFDLKVI   94 (95)
T ss_dssp             EEE----TTEEEEEEEEEE
T ss_pred             EEE----CCceEEEEEEEe
Confidence            999    556666777663

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.82  E-value=1.1e-08  Score=84.61  Aligned_cols=80  Identities=25%  Similarity=0.329  Sum_probs=64.8

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +....+..|+.+.|.|.+.+  .|.+.|+++|..+....      +..+ .+      +.|.|.+++..|+|.|+|.|.|
T Consensus         8 p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~------~~~~-~~------~~L~i~~~~~~D~G~Y~C~a~n   72 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNN------RTVL-IG------EYLQIKGATPRDSGLYACTAAR   72 (95)
T ss_dssp             CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCS------SEEE-ET------TEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCc------eEEE-eC------CEEEECcCCcccCEEEEEEEcc
Confidence            45677889999999999987  57999999998775432      2222 12      3799999999999999999999


Q ss_pred             CCCceeEEEEEEEEE
Q psy1672         341 RAGIADANFTLQVTY  355 (600)
Q Consensus       341 ~~G~~~~~v~L~V~~  355 (600)
                      ..|.....+.|.|..
T Consensus        73 ~~g~~~~~~~l~V~~   87 (95)
T 4hwu_A           73 TVDSETWIFMVNVTD   87 (95)
T ss_dssp             SSCEEEEEEEEEECC
T ss_pred             CCCcEEEEEEEEEeC
Confidence            999888888888753

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=98.81  E-value=2e-08  Score=83.83  Aligned_cols=89  Identities=19%  Similarity=0.274  Sum_probs=66.5

Q ss_pred             cccccccccc-ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         254 KPEIRMDSRY-VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       254 ~p~i~~~~~~-~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      .|.+...... ..+..|+.++|.|.+. .|.+.+.|+++++.+....      +..+..++.   ...|.|.+++..|.|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~------~~~~~~~~~---~~~L~I~~~~~~D~G   76 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPST------KYIFEHKGC---QRILFINNCQMTDDS   76 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBT------TEEEEEETT---EEEEEEEEECTTTCC
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCC------CEEEEecCC---EEEEEEcCCCcCcCE
Confidence            4555544444 5778999999999998 7899999999998775432      333433332   237999999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEEEEc
Q psy1672         333 RFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      .|+|.|    |.....+.|.|...
T Consensus        77 ~Y~C~a----g~~~~~~~l~V~~~   96 (100)
T 2yuv_A           77 EYYVTA----GDEKCSTELFVRSG   96 (100)
T ss_dssp             EEEEEE----TTEEEEEEEEECCS
T ss_pred             EEEEEE----CCceEEEEEEEecC
Confidence            999999    66777778877543

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=5.1e-09  Score=87.67  Aligned_cols=90  Identities=18%  Similarity=0.296  Sum_probs=64.4

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+..+.+..|+.++|.|.+.+.| +.+.|+++++.+.....+.  .++.+..++.   ...|.|.+++.+|+|.|
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~--~~~~~~~~~~---~~~L~I~~~~~~D~G~Y   82 (101)
T 2edk_A            9 VLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFK--ARYRFKKDGK---RHILIFSDVVQEDRGRY   82 (101)
T ss_dssp             CCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSS--CCCEEEECSS---EEEEECSSCCGGGCSBE
T ss_pred             CEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcc--eeEEEEECCC---EEEEEECCCChhhCEEE
Confidence            3444455667889999999999999988 9999999998776543110  0233333332   34799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~  354 (600)
                      +|.|.|.    ...+.|.|.
T Consensus        83 ~C~a~n~----~~~~~l~V~   98 (101)
T 2edk_A           83 QVITNGG----QCEAELIVE   98 (101)
T ss_dssp             EEECSSC----EECCBEEEE
T ss_pred             EEEEcCC----cEEEEEEEe
Confidence            9999983    333445553

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.80  E-value=4.1e-09  Score=100.65  Aligned_cols=88  Identities=17%  Similarity=0.196  Sum_probs=60.6

Q ss_pred             ccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      .+...+....+.+|+.++|.|.+.|.|.|.|.|++++..+....  ....++.+..+|..   ..+.|.+++.+|.|.|+
T Consensus       108 ~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~--~~~~r~~~~~~g~l---~il~i~~v~~~D~G~Yt  182 (203)
T 4fa8_A          108 TLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPT--AANGGVMKEKDGSL---SVAVDLSLPKPWHLPVT  182 (203)
T ss_dssp             EEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC--------------CCEECTTSCE---EEEEEEEECSSCCCCEE
T ss_pred             eeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcc--cccceEEEeCCCCE---EEEEECCCCHHHCEEEE
Confidence            33334566778899999999999999999999998654332211  11234455555532   24567799999999999


Q ss_pred             EEEecCCCceeEE
Q psy1672         336 CVAENRAGIADAN  348 (600)
Q Consensus       336 C~a~N~~G~~~~~  348 (600)
                      |+|+|.+|.+++.
T Consensus       183 C~A~N~~G~a~~v  195 (203)
T 4fa8_A          183 CVGKNDKEEAHGV  195 (203)
T ss_dssp             EEEESSSCEEEEE
T ss_pred             EEEEcCCCEEEEE
Confidence            9999999988753

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=1.1e-08  Score=86.41  Aligned_cols=89  Identities=21%  Similarity=0.313  Sum_probs=66.6

Q ss_pred             ccccccccccccccccceeeeEeecCCC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      .+......+.+.+|+.++|.|.+.+.|. +.+.|+++|+.+....      ++.+..++.   ...|.|.+++.+|+|.|
T Consensus        10 ~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~------r~~~~~~~~---~~~L~I~~v~~~D~G~Y   80 (104)
T 2eny_A           10 GITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSS------RFQATRQGR---KYILVVREAAPSDAGEV   80 (104)
T ss_dssp             CCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCS------SCEEEEETT---EEEEEECSCCTTTCSCE
T ss_pred             EEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCC------CEEEEEcCC---EEEEEECCCCHHHCEEE
Confidence            4444556788899999999999998875 4899999998776433      333333332   34799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEEEcc
Q psy1672         335 YCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      +|.|.|    ....+.|.|...+
T Consensus        81 ~C~a~~----~~~~a~L~V~~~p   99 (104)
T 2eny_A           81 VFSVRG----LTSKASLIVRERS   99 (104)
T ss_dssp             EEEETT----EEEEECEEEECCC
T ss_pred             EEEECC----eeEEEEEEEeCCC
Confidence            999865    4567777776544

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=98.79  E-value=1.7e-08  Score=96.53  Aligned_cols=96  Identities=28%  Similarity=0.474  Sum_probs=75.0

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+ ..+..+.+..|+.+.|.|.+.|.|.|.|.|+++|..+....    ..++.+...+   ..+.|.|.+++..|.|.
T Consensus        19 ~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~----~~~~~~~~~~---~~~~L~i~~~~~~d~G~   90 (215)
T 3mtr_A           19 APKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSN----YSNIKIYNTP---SASYLEVTPDSENDFGN   90 (215)
T ss_dssp             EEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSS----SCSEEEEEET---TEEEEEECCCSGGGCEE
T ss_pred             CCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCC----CccEEEecCC---CeeEEEEecCChhhCeE
Confidence            3444 34556788899999999999999999999999998876542    1233333322   13589999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEcc
Q psy1672         334 FYCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      |+|.|.|..|.....+.+.|...+
T Consensus        91 Y~C~a~n~~g~~~~~~~l~v~~~P  114 (215)
T 3mtr_A           91 YNCTAVNRIGQESLEFILVQADTP  114 (215)
T ss_dssp             EEEEEECSSCEEEEEEEEEECCCC
T ss_pred             EEEEEEECCCceEEEEEEEECCCC
Confidence            999999999999888888875443

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=98.78  E-value=1.9e-08  Score=84.30  Aligned_cols=90  Identities=23%  Similarity=0.396  Sum_probs=68.3

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+..|+.++|.|.+.+.|.+ +.|+++++.+....      +..+..++.   ...|.|.+++.+|+|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~------~~~~~~~~~---~~~L~I~~v~~~D~G~   77 (103)
T 2e7b_A            8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGD------KYSLRQEGA---MLELVVRNLRPQDSGR   77 (103)
T ss_dssp             CCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSS------SEEEEECSS---EEEEEECSCCTTTCCC
T ss_pred             CCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCC------cEEEEEcCC---EEEEEEccCCcccCEE
Confidence            4555556677889999999999999999988 99999988775322      444444442   3469999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEcc
Q psy1672         334 FYCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      |+|.    .|.....+.|.|...+
T Consensus        78 Y~C~----~g~~~~~~~l~V~~~p   97 (103)
T 2e7b_A           78 YSCS----FGDQTTSATLTVTALP   97 (103)
T ss_dssp             EEEE----CSSCBCCBCEEEECCC
T ss_pred             EEEE----ECCcEEEEEEEEEecc
Confidence            9998    5556666777775543

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.77  E-value=3.9e-08  Score=82.38  Aligned_cols=92  Identities=17%  Similarity=0.236  Sum_probs=69.9

Q ss_pred             cccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         253 CKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       253 C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      +.|.+...+..+.+.+|+.++|.|.+ +.|.+.+.|+++++.+....      +..+..++   ....|.|.+++..|+|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~------~~~~~~~~---~~~~L~I~~v~~~D~G   76 (103)
T 2dku_A            7 GANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASG------KHQPSQEG---LTLRLTISALEKADSD   76 (103)
T ss_dssp             CCCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSS------SEEEEEET---TEEEEEEESCCTTTCS
T ss_pred             CCCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCC------eEEEEeCC---CEEEEEECCCCcccCE
Confidence            34556666677889999999999994 88999999999998776433      33333333   1237999999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEEEEccC
Q psy1672         333 RFYCVAENRAGIADANFTLQVTYRGV  358 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V~~~~~  358 (600)
                      .|+|.    .|.....+.|.|...+.
T Consensus        77 ~Y~C~----~g~~~~~~~l~V~~~p~   98 (103)
T 2dku_A           77 TYTCD----IGQAQSRAQLLVQGRRS   98 (103)
T ss_dssp             EEEEE----CSSCBCCEEEEEECSCC
T ss_pred             EEEEE----eCCceEEEEEEEeCccC
Confidence            99998    67777778888866543

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=98.76  E-value=6.7e-08  Score=82.49  Aligned_cols=88  Identities=19%  Similarity=0.367  Sum_probs=67.0

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+....+.+|+.+.|.|.+.+.  |.+.|++++..+....      +..+..++.   ...|.|.+++.+|.|.|
T Consensus        20 p~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~------~~~~~~~~~---~~~L~I~~v~~~D~G~Y   88 (113)
T 2edh_A           20 IKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGD------RHSLRQDGA---RCELQIRGLVAEDAGEY   88 (113)
T ss_dssp             CCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSS------SEEEEEETT---EEEEEECSCCSTTCEEE
T ss_pred             CcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCC------cEEEEECCC---EEEEEECCCChhhCEEE
Confidence            455555667788999999999999764  7899999998775432      344444332   34799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEEEcc
Q psy1672         335 YCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      +|.|    |.....+.|.|...+
T Consensus        89 ~C~a----~~~~~~~~l~V~~~p  107 (113)
T 2edh_A           89 LCMC----GKERTSAMLTVRAMP  107 (113)
T ss_dssp             EEEE----TTEEEEEEEEECCCC
T ss_pred             EEEe----CCCCEEEEEEEeCCC
Confidence            9999    677788888886544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.76  E-value=4.9e-10  Score=117.43  Aligned_cols=142  Identities=17%  Similarity=0.130  Sum_probs=105.8

Q ss_pred             CceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCcccc-----CCCCCccEEEccCCCCCCCCcc----ccC
Q psy1672          50 LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGAL-----DGLTNLIEIDLSDNLLTSIPSL----TFQ  120 (600)
Q Consensus        50 ~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f-----~~l~~L~~L~Ls~N~l~~l~~~----~f~  120 (600)
                      .++.|+|++|.|.......+. ..+.+|+.|+|++|.|+......+     ...++|++|+|++|.|+.....    .+.
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~-~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLL-PVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTH-HHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CceEEEecCCCCCHHHHHHHH-HHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            499999999998743222221 146789999999999976544444     3568999999999999753322    235


Q ss_pred             CCCCCCEEEccCCCCCccC----cccccCCCCcceeeCCCCcCcccCh----hhhcCCCCCCEEEcCCCcCCCCCccccc
Q psy1672         121 SVRFLRDLNLARNPISKIE----KGAFQFVPGLVKLDMSESRLEHISP----EAFTGAKSLESIKLNGNRLSHFPVRSVE  192 (600)
Q Consensus       121 ~l~~L~~L~Ls~N~i~~l~----~~~~~~l~~L~~L~Ls~n~l~~i~~----~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  192 (600)
                      .+++|++|+|++|.|+...    ...+...++|+.|+|++|.|.....    ..+...++|+.|+|++|.|.......+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            6788999999999987643    3446677899999999999987543    3345678999999999999865544443

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.74  E-value=2.4e-08  Score=93.17  Aligned_cols=90  Identities=22%  Similarity=0.366  Sum_probs=70.7

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....      +..+..++.   ...|.|.+++..|.|.|
T Consensus       104 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~------~~~~~~~~~---~~~L~i~~~~~~d~G~Y  174 (194)
T 2a38_A          104 PNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSL------DFQISQEGD---LYSLLIAEAYPEDSGTY  174 (194)
T ss_dssp             EEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSS------SEEEEEETT---EEEEEEEEECGGGCEEE
T ss_pred             CEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCC------cEEEEEcCC---EEEEEECCCChhcCeEE
Confidence            334444455678889999999999999999999999998876433      233333332   23799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V  353 (600)
                      +|.|.|..|.....+.|.|
T Consensus       175 ~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          175 SVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEeCCCceEEEEEEEE
Confidence            9999999999888888776

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=98.74  E-value=1.6e-08  Score=102.58  Aligned_cols=81  Identities=20%  Similarity=0.240  Sum_probs=65.7

Q ss_pred             cccccccccceeeeEeecCCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ...+..|+.++|.|.+.|.|.| .|.|++++..+....         ...+      +.|.|.+++..|+|.|+|.|.|.
T Consensus       226 ~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~---------~~~~------~~L~i~~v~~~d~G~Y~C~a~N~  290 (313)
T 4fqp_A          226 NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA---------VAQG------AQLLIRPVDKPINTTLICNVTNA  290 (313)
T ss_dssp             SCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---------EEET------TEEEECCCSSCCEEEEEEEEECS
T ss_pred             ceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce---------EEeC------CEEEECcCChhhCEEEEEEEEeC
Confidence            3445678899999999999998 699999987765322         1122      37999999999999999999999


Q ss_pred             CCceeEEEEEEEEEccC
Q psy1672         342 AGIADANFTLQVTYRGV  358 (600)
Q Consensus       342 ~G~~~~~v~L~V~~~~~  358 (600)
                      .|..+..+.|.|.+.|+
T Consensus       291 ~G~~~~~~~l~V~~~PP  307 (313)
T 4fqp_A          291 LGARQAELTVQVKEGPP  307 (313)
T ss_dssp             SCEEEEEEEEEEECCC-
T ss_pred             CCcEEEEEEEEEEeCCC
Confidence            99999999999976654

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=98.74  E-value=9.2e-09  Score=89.77  Aligned_cols=96  Identities=10%  Similarity=0.201  Sum_probs=67.6

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEEcCeeccC-C-cccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLN-N-TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~-~-~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      ..+..+.+.+|+.++|.|.+.+.|.+.+.|++++..+.. . .......++.+...  ......|.|.+++.+|+|.|+|
T Consensus         6 ~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~L~I~~v~~~DsG~Y~C   83 (124)
T 3rbg_A            6 NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH--SANQLSITVPNVTLQDEGVYKC   83 (124)
T ss_dssp             CSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEE--ETTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeC--CCCEEEEEECCCChHHCEEEEE
Confidence            345667889999999999999999999999975442211 0 00001122222211  1124689999999999999999


Q ss_pred             EEecCCCceeEEEEEEEEEcc
Q psy1672         337 VAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       337 ~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      .|.|. |.....+.|.|...+
T Consensus        84 ~a~n~-g~~~~~~~l~V~~~P  103 (124)
T 3rbg_A           84 LHYSD-SVSTKEVKVIVLATM  103 (124)
T ss_dssp             EEESS-SEEEEEEEEEEECC-
T ss_pred             EEEcC-CCCcEEEEEEEEeCC
Confidence            99999 988888888886543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=98.74  E-value=4.8e-08  Score=97.52  Aligned_cols=99  Identities=15%  Similarity=0.175  Sum_probs=72.8

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+....+..|+.+.|.|.+.|.|.+.+.|+++++......    .........+.....+.|.|.+++.+|.|.|
T Consensus       182 p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  257 (289)
T 3mjg_X          182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLV----EPVTDFLLDMPYHIRSILHIPSAELEDSGTY  257 (289)
T ss_dssp             CCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCC----CCEEEESCTTTTEEEEEEEESSCCSSCCEEE
T ss_pred             CCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcc----cccccccCCcceEEEEEEEEcccChhhCcEE
Confidence            334444445668899999999999999999999998775433211    1111111221233457899999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEEEcc
Q psy1672         335 YCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      +|.|.|..|...+++.|.|...+
T Consensus       258 ~C~a~N~~G~~~~~~~l~v~~~~  280 (289)
T 3mjg_X          258 TCNVTESVNDHQDEKAINITVVE  280 (289)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEEC
T ss_pred             EEEeecCCCCceeEEEEEEEEEe
Confidence            99999999999999999987654

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.73  E-value=4.7e-08  Score=92.59  Aligned_cols=85  Identities=24%  Similarity=0.418  Sum_probs=69.2

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeC-CceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ-GEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~-g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      +....+..|+.+.|.|.+.|.|.|.+.|+++++.+....      +..+... +   ..+.|.|.+++..|.|.|+|.|.
T Consensus       124 ~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~------~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~  194 (212)
T 2r15_A          124 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTD------HCNLKFEAG---RTAYFTINGVSTADSGKYGLVVK  194 (212)
T ss_dssp             CSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCS------SEEEEEETT---TEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCC------CEEEEEcCC---CEEEEEEcCcchHHCeEEEEEEE
Confidence            345678889999999999999999999999998876543      2222222 2   13589999999999999999999


Q ss_pred             cCCCceeEEEEEEEE
Q psy1672         340 NRAGIADANFTLQVT  354 (600)
Q Consensus       340 N~~G~~~~~v~L~V~  354 (600)
                      |..|..+..+.|.|.
T Consensus       195 N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          195 NKYGSETSDFTVSVF  209 (212)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             cCCCcEEEEEEEEEE
Confidence            999999988888875

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.73  E-value=5.8e-08  Score=90.88  Aligned_cols=94  Identities=21%  Similarity=0.457  Sum_probs=74.0

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEe--eCCceeeeeeEEEecCCCCCC
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI--EQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~--~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      .|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|+++++.+....     .+..+.  .++    ...|.|.+++..|.
T Consensus         4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~----~~~L~i~~~~~~d~   74 (197)
T 2j8h_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG-----LKYRIQEFKGG----YHQLIIASVTDDDA   74 (197)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCS-----SSEEEEEETTT----EEEEEECSCCGGGC
T ss_pred             CCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCC-----CcEEEEEcCCC----EEEEEECcCCHHhC
Confidence            3555555677888999999999999999999999999998775422     122222  222    24799999999999


Q ss_pred             eEEEEEEecCCCceeEEEEEEEEEc
Q psy1672         332 GRFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       332 G~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      |.|+|.|.|..|.....+.|.|...
T Consensus        75 G~Y~C~~~n~~g~~~~~~~l~V~~~   99 (197)
T 2j8h_A           75 TVYQVRATNQGGSVSGTASLEVEVP   99 (197)
T ss_dssp             SEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCceeEEEEEEEcCC
Confidence            9999999999999888888888654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.72  E-value=3.1e-08  Score=92.72  Aligned_cols=84  Identities=29%  Similarity=0.387  Sum_probs=67.6

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEec-CCCCCCeEEEEEEec
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTN-AQESDSGRFYCVAEN  340 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~-v~~~d~G~Y~C~a~N  340 (600)
                      ....+..|+.+.|.|.+.|.|.+.+.|+++++.+....      +..+...+   ..+.|.|.+ ++..|.|.|+|.|.|
T Consensus       112 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~------~~~~~~~~---~~~~L~i~~~~~~~d~G~Y~C~a~N  182 (197)
T 2j8h_A          112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG------HYQVIVTR---SFTSLVFPNGVERKDAGFYVVCAKN  182 (197)
T ss_dssp             EEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSS------SCEEEECS---SEEEEECTTCCCGGGCEEEEEEEEE
T ss_pred             CeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCC------CEEEEEcC---CceEEEEeCCCCcccCEeEEEEEEe
Confidence            44567789999999999999999999999998776433      22222222   135899999 999999999999999


Q ss_pred             CCCceeEEEEEEEE
Q psy1672         341 RAGIADANFTLQVT  354 (600)
Q Consensus       341 ~~G~~~~~v~L~V~  354 (600)
                      ..|..+..+.|.|.
T Consensus       183 ~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          183 RFGIDQKTVELDVA  196 (197)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEeEEEEEEEe
Confidence            99999888888874

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.72  E-value=1.5e-08  Score=94.07  Aligned_cols=81  Identities=33%  Similarity=0.556  Sum_probs=66.5

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...+..|+.+.|.|.+.|.|.+.+.|++++..+....      +..+..++     +.|.|.+++..|.|.|+|.|.|..
T Consensus       107 ~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~------~~~~~~~~-----~~L~i~~~~~~d~G~Y~C~a~n~~  175 (189)
T 2v5t_A          107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE------KYILKGSN-----TELTVRNIINSDGGPYVCRATNKA  175 (189)
T ss_dssp             EEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSS------SEEEETTT-----TEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCC------cEEEecCC-----CEEEEcCCChhhCeeEEEEEEeCC
Confidence            4567789999999999999999999999998776433      22222222     379999999999999999999999


Q ss_pred             CceeEEEEEEEE
Q psy1672         343 GIADANFTLQVT  354 (600)
Q Consensus       343 G~~~~~v~L~V~  354 (600)
                      |.....+.|.|.
T Consensus       176 g~~~~~~~l~V~  187 (189)
T 2v5t_A          176 GEDEKQAFLQVF  187 (189)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CceeEEEEEEEE
Confidence            999998888874

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.72  E-value=6.1e-08  Score=89.87  Aligned_cols=95  Identities=28%  Similarity=0.474  Sum_probs=70.8

Q ss_pred             ccccccccccccccccccceeeeEeecCC-CCeeEEEE---cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCC-C
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYW---NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ-E  328 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P-~p~i~W~~---~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~-~  328 (600)
                      .|.+...+....+..|+.+.|.|.+.|.| .+.+.|++   ++..+....   ...++.+..++   ..+.|.|.+++ .
T Consensus        83 ~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~L~i~~v~~~  156 (184)
T 3b5h_A           83 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNG---SESRFFVSSSQ---GRSELHIENLNME  156 (184)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTT---GGGTEEEEEET---TEEEEEECSCCTT
T ss_pred             CCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecC---CCCEEEEEecC---CeeEEEEeecccc
Confidence            45555555556778899999999999999 79999999   444332211   12344444333   23579999999 9


Q ss_pred             CCCeEEEEEEecCCCceeEEEEEEEE
Q psy1672         329 SDSGRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      .|.|.|+|.|.|..|.....+.|.|.
T Consensus       157 ~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          157 ADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             TSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ccCceEEEEEEeCCCcceEEEEEEEe
Confidence            99999999999999999988888773

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=98.71  E-value=2e-08  Score=105.27  Aligned_cols=81  Identities=32%  Similarity=0.514  Sum_probs=67.6

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      .....+..|+.+.|.|.+.|.|.|.|.|+++|+.+....      ++.+ .++      .|.|.+++.+|.|.|+|.|.|
T Consensus       302 ~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~------~~~~-~~~------~L~i~~v~~~D~G~Y~C~A~N  368 (384)
T 3kld_A          302 INDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRD------RIQI-EQG------TLNITIVNLSDAGMYQCVAEN  368 (384)
T ss_dssp             CCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBT------TEEE-ETT------EEEESSCCGGGCEEEEEEEEE
T ss_pred             CCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCc------cEEE-eCC------EEEEeecChhhCEEEEEEEEe
Confidence            445667889999999999999999999999998875432      2222 223      799999999999999999999


Q ss_pred             CCCceeEEEEEEEE
Q psy1672         341 RAGIADANFTLQVT  354 (600)
Q Consensus       341 ~~G~~~~~v~L~V~  354 (600)
                      ..|....++.|.|.
T Consensus       369 ~~G~~~~~a~L~V~  382 (384)
T 3kld_A          369 KHGVIFSSAELSVI  382 (384)
T ss_dssp             TTEEEEEEEEEEEC
T ss_pred             CCceEEeceEEEEe
Confidence            99999999988873

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.71  E-value=5.5e-08  Score=90.70  Aligned_cols=95  Identities=24%  Similarity=0.477  Sum_probs=75.5

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+....      +..+..++   ....|.|.+++..|.|.
T Consensus         7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~------~~~~~~~~---~~~~L~i~~~~~~d~G~   77 (197)
T 3lcy_A            7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSR------KYKMSSDG---RTHTLTVMTEEQEDEGV   77 (197)
T ss_dssp             EEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCS------SEEEEESS---SEEEEEEECCSGGGCEE
T ss_pred             CCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCc------cEEEEeCC---CEEEEEEecCCccCCEE
Confidence            4555566677888999999999999999999999999998775432      33333333   13479999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEcc
Q psy1672         334 FYCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      |+|.|.|..|.....+.+.|...+
T Consensus        78 Y~C~~~n~~~~~~~~~~l~v~~~p  101 (197)
T 3lcy_A           78 YTCIATNEVGEVETSSKLLLQATP  101 (197)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEEEE
T ss_pred             EEEEEECCCCceeEEEEEEEEcCC
Confidence            999999999998888888886543

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=98.70  E-value=6.6e-08  Score=81.74  Aligned_cols=90  Identities=20%  Similarity=0.352  Sum_probs=66.6

Q ss_pred             cccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         253 CKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       253 C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      ..|.+...+..+.+..|+.++|.|.+.+.  |.+.|++++..+....      ++.+..++.   ...|.|.+++.+|.|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~------~~~~~~~~~---~~~L~I~~v~~~D~G   75 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGG------RYSLKQDGT---RCELQIHDLSVADAG   75 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSS------SCEEEEETT---EEEEEESSCCTTTCS
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCC------CEEEEecCC---EEEEEECCCCcccCE
Confidence            45666666677889999999999999765  6899999988765432      333333331   246999999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEEEEcc
Q psy1672         333 RFYCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      .|+|.|.|    ....+.|.|...+
T Consensus        76 ~Y~C~a~n----~~~~~~l~V~~~p   96 (108)
T 2dm7_A           76 EYSCMCGQ----ERTSATLTVRALP   96 (108)
T ss_dssp             EEEEEETT----EEEEEECEEECCC
T ss_pred             EEEEEEcC----CEEEEEEEEecCC
Confidence            99999955    5666777776544

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.69  E-value=5.4e-08  Score=96.75  Aligned_cols=91  Identities=21%  Similarity=0.408  Sum_probs=71.8

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++++.+....      +..+..++   ..+.|.|.+++..|.|.
T Consensus       192 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~------~~~~~~~~---~~~~L~i~~v~~~d~G~  262 (284)
T 2rik_A          192 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK------KYKIMSEN---FLTSIHILNVDSADIGE  262 (284)
T ss_dssp             CCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTT------TEEEEEET---TEEEEEECSCCGGGCEE
T ss_pred             CCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCC------CEEEEEcC---CEEEEEEcCCCcccCEE
Confidence            3444444555677889999999999999999999999998876543      22232222   13479999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      |+|.|.|..|.....+.|.|
T Consensus       263 Y~C~a~N~~G~~~~~~~l~V  282 (284)
T 2rik_A          263 YQCKASNDVGSYTCVGSITL  282 (284)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEeCCCceeEEEEEEE
Confidence            99999999999998888877

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=8.3e-08  Score=81.75  Aligned_cols=80  Identities=28%  Similarity=0.477  Sum_probs=61.5

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      +.+..|+.+.|.|.+. .|.+.+.|+++++.+....      +..+..++.   ...|.|.+++.+|.|.|+|.|.|   
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~------~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n---   89 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESP------ALLLQKEDT---VRRLVLPAVQLEDSGEYLCEIDD---   89 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBT------TBEEEECSS---EEEEEESSCCTTTCEEEEEESSS---
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCC------CEEEEECCC---EEEEEECCCCcccCEEEEEEEec---
Confidence            5677899999999995 7889999999998776432      223333331   24799999999999999999999   


Q ss_pred             ceeEEEEEEEEEcc
Q psy1672         344 IADANFTLQVTYRG  357 (600)
Q Consensus       344 ~~~~~v~L~V~~~~  357 (600)
                       .+..+.|.|...+
T Consensus        90 -~~~~~~l~V~~~p  102 (113)
T 2cpc_A           90 -ESASFTVTVTEPP  102 (113)
T ss_dssp             -CEEEEEEEEECCC
T ss_pred             -CcEEEEEEEecCC
Confidence             4567777776544

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.68  E-value=5.7e-08  Score=82.02  Aligned_cols=86  Identities=14%  Similarity=0.259  Sum_probs=61.3

Q ss_pred             ccccccccc-ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         255 PEIRMDSRY-VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       255 p~i~~~~~~-~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |.+...... +.+..|+.+.|.|.+ +.|.+.+.|+++|+.+....     .++.+..++.   ...|.|.+++.+|+|.
T Consensus        16 p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~-----~~~~~~~~~~---~~~L~I~~v~~~D~G~   86 (104)
T 1pd6_A           16 TAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSG-----SKYIFESIGA---KRTLTISQCSLADDAA   86 (104)
T ss_dssp             SSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCS-----SSSEEEEETT---EEEEEECSCSSSSCEE
T ss_pred             CEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCC-----CeEEEEecCC---EEEEEECCCCcccCEE
Confidence            444443333 678899999999999 78999999999998876531     1223332332   2479999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      |+|.|.|    ....+.|.|
T Consensus        87 Y~C~a~~----~~~~~~l~V  102 (104)
T 1pd6_A           87 YQCVVGG----EKCSTELFV  102 (104)
T ss_dssp             EEEEETT----EEECCEEEE
T ss_pred             EEEEECC----CcEEEEEEE
Confidence            9999954    344445554

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=2.7e-08  Score=85.41  Aligned_cols=90  Identities=26%  Similarity=0.315  Sum_probs=67.3

Q ss_pred             ccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEe-eCCceeeeeeEEEecCCCCCCeEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI-EQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~-~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      .+...+..+.+.+|+.++|.|.+.+.|.|.+.|++++..+.....+      .+. .++   ....|.|.+++.+|+|.|
T Consensus        15 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~------~~~~~~~---~~~~L~I~~v~~~D~G~Y   85 (115)
T 2cr6_A           15 HIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELN------EIDAQPG---GYHVLTLRQLALKDSGTI   85 (115)
T ss_dssp             EEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSC------CBCCBTT---TBCCBEECSCCTTTCEEE
T ss_pred             eEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcE------EEEEcCC---CEEEEEEcCCChhhCEEE
Confidence            3444456778899999999999999999999999999887654321      111 111   124799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEEEccC
Q psy1672         335 YCVAENRAGIADANFTLQVTYRGV  358 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~~~~~  358 (600)
                      +|.    +|.....+.|.|...+.
T Consensus        86 ~C~----~g~~~~~~~L~V~~~p~  105 (115)
T 2cr6_A           86 YFE----AGDQRASAALRVTEKPS  105 (115)
T ss_dssp             EEE----ETTEECCEEEEEECCSS
T ss_pred             EEE----ECCeeEEEEEEEECCCc
Confidence            999    45666677888876543

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=98.67  E-value=2.9e-08  Score=99.04  Aligned_cols=84  Identities=32%  Similarity=0.534  Sum_probs=66.9

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...+..|+.+.|.|.+.|.|.+.+.|+++|+.+....      +..+...     .+.|.|.+++..|.|.|+|.|.|..
T Consensus       203 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~------~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~N~~  271 (291)
T 2wim_A          203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE------KYILKGS-----NTELTVRNIINSDGGPYVCRATNKA  271 (291)
T ss_dssp             ECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTT------TEEECST-----TCEEEEESCCSTTCEEEEEEEEETT
T ss_pred             cceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCc------cEEEcCC-----ccEEEEeeCCcccCEEEEEEEEECC
Confidence            4567789999999999999999999999998876533      2222222     2479999999999999999999999


Q ss_pred             CceeEEEEEEEEEcc
Q psy1672         343 GIADANFTLQVTYRG  357 (600)
Q Consensus       343 G~~~~~v~L~V~~~~  357 (600)
                      |..++.+.|.|...+
T Consensus       272 G~~~~~~~l~v~~~~  286 (291)
T 2wim_A          272 GEDEKQAFLQVFVQH  286 (291)
T ss_dssp             EEEEEEEEEEC----
T ss_pred             CceeeeEEEEEEEec
Confidence            999999999886543

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.67  E-value=6e-08  Score=96.95  Aligned_cols=100  Identities=23%  Similarity=0.333  Sum_probs=71.0

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCe-eEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      .|.+...+....+..|+.+.|.|.+.|.|.|. +.|++++..+....  .................+.|.|.+++..|.|
T Consensus       188 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G  265 (290)
T 2o26_X          188 IPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIA--QVKHNSWHRGDFNYERQETLTISSARVDDSG  265 (290)
T ss_dssp             CCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECC--CEECCEEEEETTEEEEEEEEEESSCCSSSCE
T ss_pred             CCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccce--eecccccccCceeeEEEEEEEEcCCCcccCe
Confidence            45554555556788999999999999999996 99999887631000  0001111112222334568999999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEEEE
Q psy1672         333 RFYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      .|+|.|.|..|..+..+.|.|..
T Consensus       266 ~Y~C~a~N~~g~~~~~~~l~V~~  288 (290)
T 2o26_X          266 VFMCYANNTFGSANVTTTLKVVE  288 (290)
T ss_dssp             EEEEEEECSSCEEEEEEEECC--
T ss_pred             EEEEEEeCCCCcEEEEEEEEEEe
Confidence            99999999999998888888754

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.66  E-value=5.1e-08  Score=90.76  Aligned_cols=89  Identities=24%  Similarity=0.309  Sum_probs=67.9

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....    ..+.....++      .|.|.+++..|.|.|
T Consensus       101 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~------~L~i~~~~~~d~G~Y  170 (191)
T 1epf_A          101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK----DVRFIVLSNN------YLQIRGIKKTDEGTY  170 (191)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGC----CTTEEECTTS------CEEETTCCGGGCEEE
T ss_pred             ceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccC----CceEEEecCC------eEEECCCChhhCEEE
Confidence            444444556678899999999999999999999999998775322    2233333333      799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V  353 (600)
                      +|.|.|..|.......+.|
T Consensus       171 ~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          171 RCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             EEEEEEGGGTEEEEEEEEE
T ss_pred             EEEEEEecceeEEEEEEEE
Confidence            9999999976655555544

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.66  E-value=2.9e-08  Score=92.43  Aligned_cols=90  Identities=33%  Similarity=0.534  Sum_probs=69.6

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....      +..+..++      .|.|.+++..|.|.
T Consensus       100 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~------~~~~~~~~------~L~i~~~~~~d~G~  167 (192)
T 2iep_A          100 KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENS------RIAVLESG------SLRIHNVQKEDAGQ  167 (192)
T ss_dssp             EEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCS------SEEECTTS------CEEESSCCGGGCEE
T ss_pred             CCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCC------cEEEecCC------cEEEecCChhhCEE
Confidence            3444444556678889999999999999999999999998776433      33333333      79999999999999


Q ss_pred             EEEEEecCCCce-eEEEEEEEEE
Q psy1672         334 FYCVAENRAGIA-DANFTLQVTY  355 (600)
Q Consensus       334 Y~C~a~N~~G~~-~~~v~L~V~~  355 (600)
                      |+|.|.|..|.. +..+.|.|.+
T Consensus       168 Y~C~a~n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          168 YRCVAKNSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             EEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEEEcCCCcEEEEEEEEEEEe
Confidence            999999999987 4457777754

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=98.66  E-value=6e-08  Score=83.65  Aligned_cols=104  Identities=22%  Similarity=0.356  Sum_probs=70.2

Q ss_pred             cCcccccccccccccccccccceeeeEeecCCC----CeeEEEEcCe-------ecc---CCc-----ccCccceEEEee
Q psy1672         251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPP----AAISWYWNGR-------LLL---NNT-----AFSSYQRIFVIE  311 (600)
Q Consensus       251 ~~C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~----p~i~W~~~g~-------~l~---~~~-----~~~~~~~~~~~~  311 (600)
                      ++|...+...+..+.+..|+.++|.|.+.+.+.    +.+.|++.+.       .+.   ...     ......+..+..
T Consensus         2 ~~~~~~v~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~   81 (126)
T 1eaj_A            2 FARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTS   81 (126)
T ss_dssp             CCSSCEESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECC
T ss_pred             ccccEEEECCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEc
Confidence            455566666667788999999999999986654    3599998541       110   000     000122333332


Q ss_pred             CCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEEEEE
Q psy1672         312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       312 ~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      +........|.|.+++.+|+|.|+|.+.|..|.....+.|.|.
T Consensus        82 ~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  124 (126)
T 1eaj_A           82 NDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  124 (126)
T ss_dssp             SCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccccCCeEEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEE
Confidence            2111223579999999999999999999999888888888874

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.65  E-value=4.2e-08  Score=93.37  Aligned_cols=90  Identities=24%  Similarity=0.382  Sum_probs=69.5

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....     .+. ...+      +.|.|.+++..|.|.|
T Consensus       111 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-----~~~-~~~~------~~L~i~~v~~~d~G~Y  178 (212)
T 2yd1_A          111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSN-----PRY-SLKD------GFLQIENSREEDQGKY  178 (212)
T ss_dssp             CEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTS-----TTE-EEET------TEEEECSCCGGGCEEE
T ss_pred             CeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCC-----CeE-EccC------CeEEEccCChhhCEEE
Confidence            444444555677889999999999999999999999998776432     122 1222      3799999999999999


Q ss_pred             EEEEecCCCceeEE-EEEEEEEc
Q psy1672         335 YCVAENRAGIADAN-FTLQVTYR  356 (600)
Q Consensus       335 ~C~a~N~~G~~~~~-v~L~V~~~  356 (600)
                      +|.|.|..|..... +.|.|...
T Consensus       179 ~C~a~N~~G~~~s~~~~l~V~~~  201 (212)
T 2yd1_A          179 ECVAENSMGTEHSKATNLYVKVR  201 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEEEC-
T ss_pred             EEEeecCCCceeEEEEEEEEEec
Confidence            99999999988654 78888654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=98.65  E-value=1.8e-07  Score=89.02  Aligned_cols=96  Identities=28%  Similarity=0.381  Sum_probs=73.8

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCC-CCCe
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE-SDSG  332 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~-~d~G  332 (600)
                      .|.+...+....+..|+.++|.|.+.|.|.+.+.|+++++.+....     .+..+.....  ..+.|.|.+++. .|.|
T Consensus         6 pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~-----~~~~~~~~~~--~~~~L~i~~v~~~~d~G   78 (212)
T 2yd1_A            6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQ-----SRYTVLEQPG--GISILRIEPVRAGRDDA   78 (212)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTS-----TTEEEEEETT--TEEEEEESSCCTTTTCS
T ss_pred             CCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCc-----ceeEEEEcCC--CeEEEEEEecCCCCcCc
Confidence            4556666777888999999999999999999999999998875221     2333322110  125799999999 9999


Q ss_pred             EEEEEEecCCCc-eeEEEEEEEEEc
Q psy1672         333 RFYCVAENRAGI-ADANFTLQVTYR  356 (600)
Q Consensus       333 ~Y~C~a~N~~G~-~~~~v~L~V~~~  356 (600)
                      .|+|.|.|..|. ....+.|.|...
T Consensus        79 ~Y~C~~~n~~g~~~~~~~~l~V~~~  103 (212)
T 2yd1_A           79 PYECVAENGVGDAVSADATLTIYEG  103 (212)
T ss_dssp             EEEEEEECSSSCEEEEEEEEEEECT
T ss_pred             eEEEEEEeCCCCeEEeeEEEEEecc
Confidence            999999999998 677788888543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=98.64  E-value=6.3e-08  Score=90.29  Aligned_cols=94  Identities=22%  Similarity=0.396  Sum_probs=72.7

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+.+|+.++|.|.+.+.|.+.+.|++++..+......  ..+.. ..++    ...|.|.+++..|.|.
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~--~~~~~-~~~~----~~~L~i~~~~~~d~G~   77 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLP--GVQIS-FSDG----RAKLTIPAVTKANSGR   77 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTST--TCEEE-EETT----EEEEEESSCCGGGCEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCC--ceEEE-eCCC----EEEEEECCCCcccCEE
Confidence            455566667788899999999999999999999999998877544310  11111 1222    3579999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |+|.|.|..|.....+.+.|.
T Consensus        78 Y~C~~~n~~~~~~~~~~l~v~   98 (194)
T 2a38_A           78 YSLKATNGSGQATSTAELLVK   98 (194)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEcCCceEeEEEEEEEc
Confidence            999999999988888777775

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.64  E-value=5.8e-08  Score=92.48  Aligned_cols=94  Identities=27%  Similarity=0.418  Sum_probs=66.9

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+.....   ..++.....+   ..+.|.|.+++..|.|.|
T Consensus       109 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~---~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y  182 (212)
T 2yd6_A          109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNN---NGRIKQLRSE---SIGALQIEQSEESDQGKY  182 (212)
T ss_dssp             CEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC---------CCEEEEEET---TEEEEEECSCCGGGCEEE
T ss_pred             ceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCC---CceEEEEecC---CeEEEEEcCCCcccCEEE
Confidence            3344444556678899999999999999999999999988764321   1233333222   135899999999999999


Q ss_pred             EEEEecCCCcee-EEEEEEEE
Q psy1672         335 YCVAENRAGIAD-ANFTLQVT  354 (600)
Q Consensus       335 ~C~a~N~~G~~~-~~v~L~V~  354 (600)
                      +|.|.|..|... ..+.|.|.
T Consensus       183 ~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          183 ECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEECCCCccccccccEEEE
Confidence            999999999874 33555553

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.64  E-value=3.4e-08  Score=103.42  Aligned_cols=89  Identities=19%  Similarity=0.327  Sum_probs=69.9

Q ss_pred             ccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      .+...+....+..|+.++|.|.+.|.|.+.+.|+++|..+.....   ..+.. ..+      +.|.|.+++..|.|.|+
T Consensus       314 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~---~~~~~-~~~------~~L~i~~v~~~d~G~Y~  383 (404)
T 3p3y_A          314 YWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPP---NPNRE-VAG------DTIIFRDTQISSRAVYQ  383 (404)
T ss_dssp             EEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCC---CTTEE-EET------TEEEESSCCSSCCCEEE
T ss_pred             eeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCC---CceEE-ecC------CEEEEeecCHHHCEEEE
Confidence            333344556778899999999999999999999999988765431   11111 122      37999999999999999


Q ss_pred             EEEecCCCceeEEEEEEEE
Q psy1672         336 CVAENRAGIADANFTLQVT  354 (600)
Q Consensus       336 C~a~N~~G~~~~~v~L~V~  354 (600)
                      |.|.|..|.....+.|.|.
T Consensus       384 C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          384 CNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             EEEEETTEEEEEEEEEEEC
T ss_pred             EEEEeCCCcEEEEEEEEEE
Confidence            9999999999998888873

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=98.63  E-value=1.1e-07  Score=90.58  Aligned_cols=95  Identities=22%  Similarity=0.348  Sum_probs=73.4

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecC-CCCCCe
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA-QESDSG  332 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v-~~~d~G  332 (600)
                      .|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++++.+....     .......++   ..+.|.|.++ +..|.|
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~-----~~~~~~~~~---~~~~L~i~~v~~~~d~G   77 (212)
T 2yd6_A            6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQR-----FEVIEFDDG---SGSVLRIQPLRTPRDEA   77 (212)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTT-----EEEEEEGGG---TEEEEEECSCCTTTTCE
T ss_pred             CCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCc-----eeEEEEcCC---CceEEEEeccCCCCCCe
Confidence            4556666677788999999999999999999999999998775432     111112221   1357999999 599999


Q ss_pred             EEEEEEecCCCceeEEEEEEEEEc
Q psy1672         333 RFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      .|+|.|.|..|.....+.|.|...
T Consensus        78 ~Y~C~a~n~~g~~~~~~~l~V~~~  101 (212)
T 2yd6_A           78 IYECVASNNVGEISVSTRLTVLRE  101 (212)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECG
T ss_pred             EEEEEEEcCCCcEEEEEEEEEecc
Confidence            999999999999888888888643

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.63  E-value=1.2e-07  Score=95.68  Aligned_cols=84  Identities=24%  Similarity=0.429  Sum_probs=69.1

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeC-CceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ-GEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~-g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      ....+..|+.+.|.|.+.|.|.|.+.|+++++.+....      +..+... +   ..+.|.|.+++..|.|.|+|.|.|
T Consensus       230 ~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~------~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N  300 (317)
T 2y25_A          230 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDD------HCNLKFEAG---RTAYFTINGVSTADSGKYGLVVKN  300 (317)
T ss_dssp             SEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCS------SEEECCBTT---TEEEEEEBSCCSTTCEEEEEEEEE
T ss_pred             ccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCC------cEEEEEcCC---CEEEEEECCCCHHHCEEEEEEEEe
Confidence            35677899999999999999999999999998875433      2333322 2   235899999999999999999999


Q ss_pred             CCCceeEEEEEEEE
Q psy1672         341 RAGIADANFTLQVT  354 (600)
Q Consensus       341 ~~G~~~~~v~L~V~  354 (600)
                      ..|..+..+.|.|.
T Consensus       301 ~~g~~~~~~~l~V~  314 (317)
T 2y25_A          301 KYGSETSDFTVSVF  314 (317)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEEE
Confidence            99999999888885

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.62  E-value=1e-07  Score=83.31  Aligned_cols=95  Identities=21%  Similarity=0.296  Sum_probs=64.9

Q ss_pred             cccccccccccccceeeeEeecCCC---CeeEEEEcCee--c---------cCCcccCccceEEEeeCCceeeeeeEEEe
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPP---AAISWYWNGRL--L---------LNNTAFSSYQRIFVIEQGEYERKSSLVLT  324 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~---p~i~W~~~g~~--l---------~~~~~~~~~~~~~~~~~g~~~~~s~L~I~  324 (600)
                      ..+..+.+..|++++|.|.+...+.   ..|.|++++..  +         ..........|..+..+.......+|.|.
T Consensus        10 ~~~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~   89 (125)
T 4gos_A           10 VTTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLK   89 (125)
T ss_dssp             EEEECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEES
T ss_pred             ccCceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEEC
Confidence            3445667788999999999864333   26899985421  0         00000111234444443322234589999


Q ss_pred             cCCCCCCeEEEEEEecCCCceeEEEEEEE
Q psy1672         325 NAQESDSGRFYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       325 ~v~~~d~G~Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      +++.+|+|.|+|.+.|..|..++.+.|.|
T Consensus        90 ~v~~~D~G~Y~C~v~~~~g~~~~~v~LkV  118 (125)
T 4gos_A           90 NVQLTDAGTYKCYIITSKGKGNANLEYKT  118 (125)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCChHHCEEEEEEEEeCCCeEEEEEEEEE
Confidence            99999999999999999999999999987

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.62  E-value=2.7e-08  Score=104.29  Aligned_cols=87  Identities=26%  Similarity=0.400  Sum_probs=69.6

Q ss_pred             ccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      .+...+....+..|+.++|.|.+.|.|.+.+.|+++|+.+....      +..+..+      +.|.|.+++..|.|.|+
T Consensus       314 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~------~~~~~~~------~~L~i~~v~~~d~G~Y~  381 (403)
T 3laf_A          314 WFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSD------YFQIVGG------SNLRILGVVKSDEGFYQ  381 (403)
T ss_dssp             EEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSS------SEEEETT------TEEEESSCCGGGCEEEE
T ss_pred             cEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCC------cEEEecC------ccEEEeccccccCEEEE
Confidence            33334455667889999999999999999999999998775433      2222222      37999999999999999


Q ss_pred             EEEecCCCceeEEEEEEEE
Q psy1672         336 CVAENRAGIADANFTLQVT  354 (600)
Q Consensus       336 C~a~N~~G~~~~~v~L~V~  354 (600)
                      |.|.|..|..+..+.|.|.
T Consensus       382 C~a~N~~G~~~~~~~l~V~  400 (403)
T 3laf_A          382 CVAENEAGNAQSSAQLIVP  400 (403)
T ss_dssp             EEEEETTEEEEEEEEEECC
T ss_pred             EEEEcCCceEEEEEEEEEe
Confidence            9999999999998888774

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.62  E-value=8.5e-08  Score=80.14  Aligned_cols=81  Identities=28%  Similarity=0.528  Sum_probs=60.9

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..+.+..|+.++|.|.+. .|.+.+.|+++++.+....      +..+..++   ....|.|.+++..|.|.|+|.|.| 
T Consensus        19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~------~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~~-   87 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSS------KVRVEAVG---CTRRLVVQQAGQAEAGEYSCEAGG-   87 (102)
T ss_dssp             EEEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCS------SEEEEEET---TEEEEEETTCCTTTCSCEEEEETT-
T ss_pred             ccEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCC------CEEEEEcC---CEEEEEECCCCcccCEEEEEEcCC-
Confidence            456788999999999998 8889999999998875432      33333333   124799999999999999999965 


Q ss_pred             CCceeEEEEEEEEEc
Q psy1672         342 AGIADANFTLQVTYR  356 (600)
Q Consensus       342 ~G~~~~~v~L~V~~~  356 (600)
                         ....+.|.|...
T Consensus        88 ---~~~~~~l~V~~p   99 (102)
T 2eo1_A           88 ---QQLSFRLQVAGQ   99 (102)
T ss_dssp             ---EECCEEEEEESC
T ss_pred             ---CcEEEEEEEeCC
Confidence               345566766543

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.62  E-value=1.2e-07  Score=94.16  Aligned_cols=94  Identities=22%  Similarity=0.401  Sum_probs=74.1

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+..|+.++|.|.+.+.|.+.+.|++++..+.....    .++....     ..+.|.|.+++..|.|.
T Consensus         5 pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~----~~~~~~~-----~~~~L~i~~v~~~d~G~   75 (284)
T 2rik_A            5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGN----YKMTLVE-----NTATLTVLKVTKGDAGQ   75 (284)
T ss_dssp             CCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSS----EEEEEET-----TEEEEEESSCCGGGCEE
T ss_pred             CCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCc----EEEEEcC-----CEEEEEEecCCcccCEE
Confidence            45555566778889999999999999999999999999987764331    1222111     13589999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEc
Q psy1672         334 FYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      |+|.|.|..|..+..+.|.|...
T Consensus        76 Y~C~~~n~~g~~~~~~~l~V~~~   98 (284)
T 2rik_A           76 YTCYASNVAGKDSCSAQLGVQEP   98 (284)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEEEECCceEEEEEEEEccCC
Confidence            99999999999888888888654

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.61  E-value=1.1e-07  Score=96.25  Aligned_cols=100  Identities=19%  Similarity=0.292  Sum_probs=73.1

Q ss_pred             ccccccccc-cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCC---ceeeeeeEEEecCCCC
Q psy1672         254 KPEIRMDSR-YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG---EYERKSSLVLTNAQES  329 (600)
Q Consensus       254 ~p~i~~~~~-~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g---~~~~~s~L~I~~v~~~  329 (600)
                      .|.+...+. .+.+..|+.+.|.|.+.|.|.|.+.|+++|..+..........+..+....   .....+.|.|.+++..
T Consensus       208 ~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  287 (315)
T 1itb_B          208 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR  287 (315)
T ss_dssp             CCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHH
Confidence            444443333 357889999999999999999999999999988654322111122221111   1123468999999999


Q ss_pred             C-CeEEEEEEecCCCceeEEEEEEE
Q psy1672         330 D-SGRFYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       330 d-~G~Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      | .|.|+|.|.|..|.....+.|.|
T Consensus       288 d~~G~Y~C~a~N~~G~~~~~~~l~v  312 (315)
T 1itb_B          288 FYKHPFTCFAKNTHGIDAAYIQLIY  312 (315)
T ss_dssp             GGTSCEEEEEECTTCCEEEEEEEEC
T ss_pred             HcCCceEEEEecCCCceeEEEEEEe
Confidence            9 99999999999999999888876

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=98.61  E-value=1.1e-07  Score=88.67  Aligned_cols=85  Identities=19%  Similarity=0.305  Sum_probs=67.9

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCC-CCCeEEEEEEec
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE-SDSGRFYCVAEN  340 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~-~d~G~Y~C~a~N  340 (600)
                      ....+..|+.+.|.|.+.+.|.+.+.|++++..+....      +..+...+   ..+.|.|.+++. +|.|.|+|.|.|
T Consensus       111 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~------~~~~~~~~---~~~~L~i~~~~~~~d~G~Y~C~a~n  181 (197)
T 3lcy_A          111 EKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSE------NITIENTE---HYTHLVMKNVQRKTHAGKYKVQLSN  181 (197)
T ss_dssp             SEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCS------SEEEEECS---SEEEEEESSCCHHHHCEEEEEEEEC
T ss_pred             cceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCC------ceEEEEcC---CEEEEEEccccchhhCceEEEEEEc
Confidence            34566789999999999999999999999998876433      23333332   125799999994 899999999999


Q ss_pred             CCCceeEEEEEEEEE
Q psy1672         341 RAGIADANFTLQVTY  355 (600)
Q Consensus       341 ~~G~~~~~v~L~V~~  355 (600)
                      ..|..+..+.|.|..
T Consensus       182 ~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          182 VFGTVDAILDVEIQD  196 (197)
T ss_dssp             SSCEEEEEEEEEEEC
T ss_pred             CcCceEEEEEEEEec
Confidence            999999998888853

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.61  E-value=1.6e-07  Score=93.45  Aligned_cols=96  Identities=21%  Similarity=0.303  Sum_probs=72.8

Q ss_pred             ccccccccccccccccccceeeeEeec-CCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      .|.+...+....+..|+.+.|.|.+.+ .|.+.+.|++++..+....       ............+.|.|.+++..|.|
T Consensus       186 ~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~-------~~~~~~~~~~~~~~L~i~~v~~~d~G  258 (289)
T 3ejj_X          186 PPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPL-------NSDFQDNYYKKVRALSLNAVDFQDAG  258 (289)
T ss_dssp             CCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCE-------EEEECSSSEEEEEEEEESSCCSSSCE
T ss_pred             CCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccC-------CcccccceEEeeEEEEEEeecccCCE
Confidence            445555555566678999999999998 7899999999988775432       11112223334568999999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEEEEc
Q psy1672         333 RFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      .|+|.|.|..|..++++.|.+...
T Consensus       259 ~Y~C~a~N~~G~~~~s~~L~~~~~  282 (289)
T 3ejj_X          259 IYSCVASNDVGTRTATMNFQVVES  282 (289)
T ss_dssp             EEEEEEECSSCEEEEEEEEECC--
T ss_pred             EEEEEEEcCCCCccccEEEEEEec
Confidence            999999999999999999987543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.61  E-value=7e-08  Score=100.45  Aligned_cols=82  Identities=29%  Similarity=0.408  Sum_probs=67.7

Q ss_pred             ccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      .+....+..|+.+.|.|.+.|.|.+.+.|+++|..+....      ++.+ .+      +.|.|.+++..|.|.|+|.|.
T Consensus       300 ~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~------~~~~-~~------~~L~i~~v~~~d~G~Y~C~a~  366 (382)
T 1cs6_A          300 VITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN------RIEV-SG------GELRFSKLVLEDSGMYQCVAE  366 (382)
T ss_dssp             CCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCS------SEEE-ET------TEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCc------eEEE-EC------CEEEECcCCcccCEEEEEEEE
Confidence            3445667889999999999999999999999998876432      2222 22      379999999999999999999


Q ss_pred             cCCCceeEEEEEEEE
Q psy1672         340 NRAGIADANFTLQVT  354 (600)
Q Consensus       340 N~~G~~~~~v~L~V~  354 (600)
                      |..|.....+.|.|.
T Consensus       367 N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          367 NKHGTVYASAELTVQ  381 (382)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCeEEEEEEEEEe
Confidence            999999998888873

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.60  E-value=9e-08  Score=89.55  Aligned_cols=87  Identities=23%  Similarity=0.262  Sum_probs=68.1

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+........+..|+.+.|.|.+.+.|.+.+.|++++..+....        .+...     .+.|.|.+++..|.|.|
T Consensus       114 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~--------~~~~~-----~~~L~i~~v~~~d~G~Y  180 (201)
T 3s97_C          114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTA--------EISTS-----GAVLKIFNIQLEDEGIY  180 (201)
T ss_dssp             EEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTC--------EEETT-----TTEEEECSCCGGGCEEE
T ss_pred             CceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCce--------eecCC-----CCEEEEccCChhhCEEE
Confidence            333333446677889999999999999999999999887654321        11111     23799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~  354 (600)
                      +|.|.|..|..+..+.|.|.
T Consensus       181 ~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          181 ECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEecCCceeeeEEEEEe
Confidence            99999999999888888773

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=98.60  E-value=1.2e-07  Score=90.61  Aligned_cols=93  Identities=14%  Similarity=0.194  Sum_probs=65.1

Q ss_pred             ccccccccccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCC--ceeeeeeEEEecCCCCCCeEEEEE
Q psy1672         262 RYVEAVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQG--EYERKSSLVLTNAQESDSGRFYCV  337 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g--~~~~~s~L~I~~v~~~d~G~Y~C~  337 (600)
                      ..+.+..|+.++|.|.+.|.|.  +++.|+++++.+.....  ...+. ....+  .....+.|.|.+++.+|+|.|+|.
T Consensus       113 ~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~--~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  189 (213)
T 2x1w_L          113 HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKL--VNRDL-KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCA  189 (213)
T ss_dssp             SCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEE--EEEEE-CCCSSCSCEEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEE--ecccc-ccccCccceeeeEEEEECCCCcccCEEEEEE
Confidence            3447889999999999998654  57999998875432110  00000 00000  023346899999999999999999


Q ss_pred             EecCCCceeEEEEEEEEEcc
Q psy1672         338 AENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       338 a~N~~G~~~~~v~L~V~~~~  357 (600)
                      |.|..|..++.+.|.|..++
T Consensus       190 a~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          190 ASSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             EECSSCEEEEEEEEEEEC--
T ss_pred             EecCCCcEEEEEEEEEeccc
Confidence            99999999999999986543

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=4.1e-07  Score=77.85  Aligned_cols=96  Identities=17%  Similarity=0.205  Sum_probs=68.6

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcc----cCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTA----FSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~----~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      +.+........+.+|+.+.|.|.+.+  .+.+.|++||+.+.....    +....++.+..+|.   ...|+|.+++.+|
T Consensus         9 ~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~---~~~L~I~~v~~~D   83 (112)
T 2e6q_A            9 ARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGL---QHRLILHAVKHQD   83 (112)
T ss_dssp             CCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTT---EEEEEEESCCSTT
T ss_pred             cEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCc---EEEEEECCCCHHH
Confidence            34555567788999999999999997  778999999998865420    00011555555542   3479999999999


Q ss_pred             CeEEEEEEecCCCceeEEEEEEEEEccC
Q psy1672         331 SGRFYCVAENRAGIADANFTLQVTYRGV  358 (600)
Q Consensus       331 ~G~Y~C~a~N~~G~~~~~v~L~V~~~~~  358 (600)
                      +|.|+|...+   ....++.|.|...+.
T Consensus        84 ~G~Y~~~~~~---~~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           84 SGALVGFSCP---GVQDSAALTIQESSG  108 (112)
T ss_dssp             CSEEEEEEET---TEEEEEEEEEECSSC
T ss_pred             CccEEEEEEC---CeeEEEEEEEeCCCc
Confidence            9999875544   345677888866543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.60  E-value=1.5e-07  Score=94.55  Aligned_cols=94  Identities=21%  Similarity=0.457  Sum_probs=74.1

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEe--eCCceeeeeeEEEecCCCCCC
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI--EQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~--~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      .|.+...+..+.+..|+.++|.|.+.|.|.+.+.|++++..+....     .+..+.  .++    .+.|.|.+++..|.
T Consensus         4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~----~~~L~i~~v~~~d~   74 (305)
T 2nzi_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG-----LKYRIQEFKGG----YHQLIIASVTDDDA   74 (305)
T ss_dssp             CCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCS-----SSEEEEEETTT----EEEEEESSCCGGGC
T ss_pred             CCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCC-----CeEEEEECCCC----EEEEEEccCChhhC
Confidence            3555556677889999999999999999999999999998775322     122222  222    34799999999999


Q ss_pred             eEEEEEEecCCCceeEEEEEEEEEc
Q psy1672         332 GRFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       332 G~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      |.|+|.|.|..|.....+.|.|...
T Consensus        75 G~Y~C~a~n~~g~~~~~~~l~V~~~   99 (305)
T 2nzi_A           75 TVYQVRATNQGGSVSGTASLEVEVP   99 (305)
T ss_dssp             SEEEEEEEETTEEEEEEEEEEECEE
T ss_pred             eEEEEEEEcCCCCccceEEEEEecC
Confidence            9999999999998888888888543

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.59  E-value=9.9e-08  Score=95.10  Aligned_cols=86  Identities=28%  Similarity=0.498  Sum_probs=67.9

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+......  ..+.....++     +.|.|.+++..|.|.|+|.|.|..
T Consensus       205 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~--~~~~~~~~~~-----~~L~i~~v~~~d~G~Y~C~a~N~~  277 (291)
T 1qz1_A          205 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEED--DEKHIFSDDS-----SELTIRNVDKNDEAEYVCIAENKA  277 (291)
T ss_dssp             EEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--C--CSSEEECTTS-----CEEEECSCCGGGCEEEEEEEEETT
T ss_pred             ccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCC--CcceEEcCCC-----cEEEEEecChhcCEEEEEEEEeCC
Confidence            456778999999999999999999999999887654311  1123222222     479999999999999999999999


Q ss_pred             CceeEEEEEEEEE
Q psy1672         343 GIADANFTLQVTY  355 (600)
Q Consensus       343 G~~~~~v~L~V~~  355 (600)
                      |..+..+.|.|..
T Consensus       278 G~~~~~~~l~V~~  290 (291)
T 1qz1_A          278 GEQDASIHLKVFA  290 (291)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             CceEEEEEEEEEc
Confidence            9999999988853

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.58  E-value=5.6e-08  Score=91.77  Aligned_cols=85  Identities=12%  Similarity=0.175  Sum_probs=66.1

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ....+..|..+.+.|.+.|.|+|.|.|++++..+....        ....++.....+.|.|.++...|.|.|+|.|+|.
T Consensus       126 ~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~--------~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~  197 (218)
T 4frw_A          126 PALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSR--------SFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHP  197 (218)
T ss_dssp             SCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEE--------EEECSSSEEEEEEEEECCCGGGTTCEEEEEEECT
T ss_pred             eeeeeeeccccceeeeccCCcCceEEEEECCcccccCc--------eEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeC
Confidence            44556778899999999999999999999887654321        1222333445678999999999999999999999


Q ss_pred             CCceeEEEEEEEE
Q psy1672         342 AGIADANFTLQVT  354 (600)
Q Consensus       342 ~G~~~~~v~L~V~  354 (600)
                      .|.....+.+.|.
T Consensus       198 ~g~~~~~~t~~v~  210 (218)
T 4frw_A          198 GLLQDQRITHILH  210 (218)
T ss_dssp             TCSSCEEEEEECC
T ss_pred             CCCeEEEEEEEEE
Confidence            9988777766653

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.58  E-value=1.1e-07  Score=88.87  Aligned_cols=96  Identities=17%  Similarity=0.238  Sum_probs=70.3

Q ss_pred             cccccccccccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEE--eeCCc--eeeeeeEEEecCCCC
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFV--IEQGE--YERKSSLVLTNAQES  329 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~--~~~g~--~~~~s~L~I~~v~~~  329 (600)
                      |.+...+..+.+..|+.+.|.|.+. +.|.+.+.|+++++.+....    ..+..+  ..++.  +...+.|.|.+++..
T Consensus         3 ~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~----~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   78 (195)
T 2c5d_C            3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELAD----STQTQVPLGEDEQDDWIVVSQLRITSLQLS   78 (195)
T ss_dssp             CSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCE----EEEEEEECSSSTTSEEEEEEEEEESSCCST
T ss_pred             CeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCC----CCceEEEEccccccceeeccEEEEEecccc
Confidence            4455567778899999999999999 99999999999998876542    112222  22211  112468999999999


Q ss_pred             CCeEEEEEEecCCCceeEE-EEEEEE
Q psy1672         330 DSGRFYCVAENRAGIADAN-FTLQVT  354 (600)
Q Consensus       330 d~G~Y~C~a~N~~G~~~~~-v~L~V~  354 (600)
                      |.|.|+|.|.|..|..... +.|.|.
T Consensus        79 d~G~Y~C~~~~~~~~~~~~~~~l~V~  104 (195)
T 2c5d_C           79 DTGQYQCLVFLGHQTFVSQPGYVGLE  104 (195)
T ss_dssp             TCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CCcEEEEEEEeCCCceecccEEEEEe
Confidence            9999999999988764332 666663

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.58  E-value=1.1e-07  Score=90.43  Aligned_cols=92  Identities=21%  Similarity=0.488  Sum_probs=68.8

Q ss_pred             cccccccccccccccceeeeEe-ecCCCCeeEEEEcCeeccCCccc--CccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         257 IRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAF--SSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v-~g~P~p~i~W~~~g~~l~~~~~~--~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      +...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+......  ....+.....+      +.|.|.+++.+|.|.
T Consensus       111 ~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~------~~L~i~~~~~~d~G~  184 (217)
T 2vr9_A          111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDG------GNLLISNVEPIDEGN  184 (217)
T ss_dssp             CSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETT------TEEEESSCCSTTCEE
T ss_pred             cEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCC------CcEEEeeCCHHHCeE
Confidence            3334455667889999999999 79999999999999887643211  11223333333      379999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |+|.|.|..|.....+.+.+.
T Consensus       185 Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          185 YKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             EEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEcccceeccccEEEEE
Confidence            999999999998777666554

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=98.57  E-value=1.5e-07  Score=87.46  Aligned_cols=92  Identities=33%  Similarity=0.480  Sum_probs=70.2

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+....     .+..+..++     ..|.|.+++..|.|.|
T Consensus         8 P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~-----~~~~~~~~~-----~~L~i~~~~~~d~G~Y   77 (192)
T 2iep_A            8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFD-----TRYSIRENG-----QLLTILSVEDSDDGIY   77 (192)
T ss_dssp             EEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTC-----TTEEEEGGG-----TEEEESSCCGGGCEEE
T ss_pred             ceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccC-----ccEEEcCCc-----cEEEEcCCCcccCeEE
Confidence            444555666778899999999999999999999999988765321     233343333     3699999999999999


Q ss_pred             EEEEecCCCc-eeEEEEEEEEEc
Q psy1672         335 YCVAENRAGI-ADANFTLQVTYR  356 (600)
Q Consensus       335 ~C~a~N~~G~-~~~~v~L~V~~~  356 (600)
                      +|.+.|..|. ....+.+.|...
T Consensus        78 ~C~~~~~~~~~~~~~~~l~v~~~  100 (192)
T 2iep_A           78 CCTANNGVGGAVESCGALQVKMK  100 (192)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEE
T ss_pred             EEEEEcCCCceeEeEEEEEEEeC
Confidence            9999999887 455566666543

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.56  E-value=1.8e-07  Score=86.38  Aligned_cols=94  Identities=17%  Similarity=0.320  Sum_probs=68.9

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+....      +..+..++ ....+.|.|.+++..|.|.|
T Consensus         3 ~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~------~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y   75 (182)
T 1rhf_A            3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLD------QLYIPVSE-QHWIGFLSLKSVERSDAGRY   75 (182)
T ss_dssp             ----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSE------EEEEEEET-TEEEEEEEESSCCGGGCEEE
T ss_pred             CEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCC------ceEEEecC-CCceEEEEEeecCcccCeEE
Confidence            345555677888999999999999999999999999998776432      22222222 12246899999999999999


Q ss_pred             EEEEecCCCc-eeEEEEEEEEE
Q psy1672         335 YCVAENRAGI-ADANFTLQVTY  355 (600)
Q Consensus       335 ~C~a~N~~G~-~~~~v~L~V~~  355 (600)
                      +|.|.|..|. .+..+.|.|..
T Consensus        76 ~C~~~~~~~~~~~~~~~l~V~~   97 (182)
T 1rhf_A           76 WCQVEDGGETEISQPVWLTVEG   97 (182)
T ss_dssp             EEEESSCTTCEECCCEEEEEEC
T ss_pred             EEEEEcCCCcEEEEEEEEEEec
Confidence            9999999775 34567777753

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.56  E-value=3e-07  Score=95.83  Aligned_cols=93  Identities=28%  Similarity=0.394  Sum_probs=71.5

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEc--CeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      +....+.+|+.+.|.|.+.|.|.+.|.|+++  |..+..... ....++.+....   ..+.|.|.+++.+|.|.|+|.|
T Consensus         7 ~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~-~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a   82 (389)
T 2jll_A            7 LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDK-SLDGRIEVKGQH---GSSSLHIKDVKLSDSGRYDCEA   82 (389)
T ss_dssp             CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--C-CSSSSEEEEECS---SEEEEEEESCCGGGCEEEEEEE
T ss_pred             cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcC-CCCCeEEEeccC---CcceEEEcccChhhCEEEEEEE
Confidence            3455667799999999999999999999998  877754321 112344443321   2458999999999999999999


Q ss_pred             ecCCCceeEEEEEEEEEcc
Q psy1672         339 ENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       339 ~N~~G~~~~~v~L~V~~~~  357 (600)
                      .|..|..+..+.|.|...+
T Consensus        83 ~n~~g~~~~~~~l~V~~~P  101 (389)
T 2jll_A           83 ASRIGGHQKSMYLDIEYAP  101 (389)
T ss_dssp             ECSSCEEEEEEEEEEEEEE
T ss_pred             EeCCCCcceEEEEEEEeCC
Confidence            9999999988999887654

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.55  E-value=1.1e-07  Score=99.10  Aligned_cols=74  Identities=20%  Similarity=0.373  Sum_probs=64.4

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +....+..|+.+.|.|.+.|.|.+.|.|+++|..+....                   +.|.|.+++..|.|.|+|.|.|
T Consensus       314 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~-------------------~~L~i~~v~~~d~G~Y~C~a~N  374 (388)
T 2v5m_A          314 PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-------------------SVLRIESVKKEDKGMYQCFVRN  374 (388)
T ss_dssp             SSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCS-------------------SEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccCC-------------------CEEEEecCChhhCEEEEEEEEc
Confidence            445667889999999999999999999999998765321                   3799999999999999999999


Q ss_pred             CCCceeEEEEEEE
Q psy1672         341 RAGIADANFTLQV  353 (600)
Q Consensus       341 ~~G~~~~~v~L~V  353 (600)
                      ..|.....+.|.|
T Consensus       375 ~~G~~~~~~~l~V  387 (388)
T 2v5m_A          375 DRESAEASAELKL  387 (388)
T ss_dssp             SSCEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEe
Confidence            9999999888876

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=98.55  E-value=1.5e-07  Score=84.23  Aligned_cols=96  Identities=15%  Similarity=0.177  Sum_probs=66.7

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEEcCee-ccCC-cccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRL-LLNN-TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~-l~~~-~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      ..+..+.+..|+.++|.|.+.+.|.+.+.|++.+.. +... .......++.+....  .....|.|.+++.+|+|.|+|
T Consensus        43 ~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~--~~~~~L~I~~v~~~DsG~Y~C  120 (145)
T 1z9m_A           43 PWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTST--PHELSISISNVALADEGEYTC  120 (145)
T ss_dssp             CBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEEC--SSEEEEEECSCCGGGCEEEEE
T ss_pred             cCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCC--CCeEEEEECCCChhhCEEEEE
Confidence            345678889999999999999998899999953221 1000 000011223222211  124589999999999999999


Q ss_pred             EEecCCCceeEEEEEEEEEcc
Q psy1672         337 VAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       337 ~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      .|.|. |.....+.|.|...+
T Consensus       121 ~~~n~-~~~~~~~~L~V~~~P  140 (145)
T 1z9m_A          121 SIFTM-PVRTAKSLVTVLGIP  140 (145)
T ss_dssp             EECSS-SCEEEEEEEEEECCC
T ss_pred             EEEcC-CCceEEEEEEEEeCC
Confidence            99999 988888888886543

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.54  E-value=1e-07  Score=90.07  Aligned_cols=86  Identities=29%  Similarity=0.463  Sum_probs=66.1

Q ss_pred             ccccccccccccceeeeEe-ecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         260 DSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      .+....+..|+.+.|.|.+ .+.|.+.+.|++++..+....     .+.. ..+      +.|.|.+++.+|.|.|+|.|
T Consensus       117 ~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~-----~~~~-~~~------~~L~i~~~~~~d~G~Y~C~a  184 (212)
T 2v9r_A          117 NPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD-----ERIT-IRG------GKLMITYTRKSDAGKYVCVG  184 (212)
T ss_dssp             CCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTS-----TTEE-EET------TEEEESSCCGGGCEEEEEEE
T ss_pred             CCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCc-----ceEE-ccC------CeEEEeeCCHhhCeeEEEEE
Confidence            3455677889999999999 799999999999998876432     1121 122      37999999999999999999


Q ss_pred             ecCCCceeE-EEEEEEEEcc
Q psy1672         339 ENRAGIADA-NFTLQVTYRG  357 (600)
Q Consensus       339 ~N~~G~~~~-~v~L~V~~~~  357 (600)
                      .|..|.... .+.|.|...+
T Consensus       185 ~N~~g~~~s~~~~l~V~~~P  204 (212)
T 2v9r_A          185 TNMVGERESEVAELTVLERP  204 (212)
T ss_dssp             EETTEEEECCCEEEEEEC--
T ss_pred             ecccCceecceEEEEEEeCc
Confidence            999998654 3788886543

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.54  E-value=3e-07  Score=88.94  Aligned_cols=97  Identities=25%  Similarity=0.289  Sum_probs=68.3

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEE----cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYW----NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~----~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      +....+..|+.+.|.|.+.+.|.+.+.|++    ++..+........ ..............+.|.|.+++..|.|.|+|
T Consensus       121 ~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  199 (241)
T 3grw_A          121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYV-TVLKSWISESVEADVRLRLANVSERDGGEYLC  199 (241)
T ss_dssp             TCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCE-EEEEEEECSBSEEEEEEEECSCCGGGCEEEEE
T ss_pred             CccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceee-eeeeEeeeeecCCceEEEECcCCcccCcEEEE
Confidence            345567789999999999999999999999    7766543321100 00111111222345689999999999999999


Q ss_pred             EEecCCCceeEEEEEEEEEccC
Q psy1672         337 VAENRAGIADANFTLQVTYRGV  358 (600)
Q Consensus       337 ~a~N~~G~~~~~v~L~V~~~~~  358 (600)
                      .|.|..|..+..+.|.|...+.
T Consensus       200 ~a~N~~g~~~~~~~l~V~~~p~  221 (241)
T 3grw_A          200 RATNFIGVAEKAFWLSVHGPRA  221 (241)
T ss_dssp             EEECSSCEEEEEEEEEC-----
T ss_pred             EEecCcceEEEEEEEEecCCCC
Confidence            9999999999999998866543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.53  E-value=2.5e-07  Score=86.15  Aligned_cols=80  Identities=21%  Similarity=0.226  Sum_probs=63.5

Q ss_pred             ccccccc-cccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         262 RYVEAVS-SENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       262 ~~~~v~~-G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      ....+.. |+.+.|.|.+.+.|.  +.+.|++++..+......              ...+.|.|.+++..|.|.|+|.|
T Consensus        10 ~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~--------------~~~~~L~i~~~~~~d~G~Y~C~~   75 (190)
T 2wv3_A           10 EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN--------------ASNMEYRINKPRAEDSGEYHCVY   75 (190)
T ss_dssp             CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBC--------------CSEEEEEESSCCGGGCEEEEEEE
T ss_pred             ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceE--------------eccEEEEEecCCcccCEEEEEEE
Confidence            3344445 999999999998887  899999999877643311              12358999999999999999999


Q ss_pred             ecCCCceeEEEEEEEEEc
Q psy1672         339 ENRAGIADANFTLQVTYR  356 (600)
Q Consensus       339 ~N~~G~~~~~v~L~V~~~  356 (600)
                      .|. |.....+.|.|...
T Consensus        76 ~n~-~~~~~~~~l~V~~~   92 (190)
T 2wv3_A           76 HFV-SAPKANATIEVKAA   92 (190)
T ss_dssp             EET-TEEEEEEEEEEECC
T ss_pred             EeC-CcccccEEEEEecC
Confidence            999 88888888888643

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.52  E-value=2e-07  Score=87.21  Aligned_cols=84  Identities=17%  Similarity=0.304  Sum_probs=66.5

Q ss_pred             ccccccccccccccccccceeeeEeecCCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      .|.+...+....+..|+.+.|.|.+.|.|.| .+.|++++..+......              ...+.|.|.+++  |+|
T Consensus       106 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~--------------~~~~~L~i~~~~--d~G  169 (195)
T 2c5d_C          106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH--------------GPQRSLHVPGLN--KTS  169 (195)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS--------------SCCEEEEECCCS--SCE
T ss_pred             CCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc--------------CCCCeEEEcccc--cCc
Confidence            4555555556778889999999999999999 99999999877654311              123478899887  789


Q ss_pred             EEEEEEecCCCcee-EEEEEEE
Q psy1672         333 RFYCVAENRAGIAD-ANFTLQV  353 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~-~~v~L~V  353 (600)
                      .|+|.|.|..|... +.+.|.|
T Consensus       170 ~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          170 SFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEE
T ss_pred             eEEEEEEcCCCceEEEEEEEEE
Confidence            99999999999885 6788877

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.52  E-value=2.4e-07  Score=102.44  Aligned_cols=91  Identities=22%  Similarity=0.360  Sum_probs=73.6

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+........+..|+.+.+.|.+.|.|.|++.|+++++.+....      ++.+..++.   ...|.|.++...|+|.|
T Consensus       483 P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~------~~~i~~~~~---~~~L~I~~~~~~D~G~Y  553 (573)
T 3uto_A          483 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV------KYMKRYNGN---DYGLTINRVKGDDKGEY  553 (573)
T ss_dssp             CEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSS------SEEEEEETT---EEEEEECSCCGGGCEEE
T ss_pred             CccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCC------cEEEEEcCC---EEEEEEcCCCcccCcEE
Confidence            333334456678899999999999999999999999999887544      344433332   24799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~  354 (600)
                      +|+|.|..|.+++.+.|.|+
T Consensus       554 t~~A~N~~G~~~~~v~l~Vt  573 (573)
T 3uto_A          554 TVRAKNSYGTKEEIVFLNVT  573 (573)
T ss_dssp             EEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEeCCCcEEEEEEEEEC
Confidence            99999999999999999873

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.51  E-value=1.6e-07  Score=89.93  Aligned_cols=82  Identities=13%  Similarity=0.270  Sum_probs=66.2

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....                  ...|.|.+++..|.|.|
T Consensus       119 p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~------------------~~~L~i~~v~~~d~G~Y  180 (218)
T 3k0w_A          119 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET------------------KKLYMVPYVDLEHQGTY  180 (218)
T ss_dssp             CEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC------------------SSEEEESSCCGGGCEEE
T ss_pred             ceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC------------------CCEEEEeecChhcCEEE
Confidence            344444556778899999999999999999999999988775432                  13689999999999999


Q ss_pred             EEEEecCCCc-eeEEEEEEEE
Q psy1672         335 YCVAENRAGI-ADANFTLQVT  354 (600)
Q Consensus       335 ~C~a~N~~G~-~~~~v~L~V~  354 (600)
                      +|.|.|..|. .+..+.|.|.
T Consensus       181 ~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          181 WCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             EEEEECSSCEEECCCEEEEEC
T ss_pred             EEEEEcCCCCceeeeEEEEEe
Confidence            9999999887 4566677664

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.51  E-value=2.5e-07  Score=102.26  Aligned_cols=91  Identities=20%  Similarity=0.380  Sum_probs=71.3

Q ss_pred             ccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      .+...+..+.+..|+.+.|.|.+.|.|.|.+.|+++++.+....      +..+..++.   .+.|.|.+++.+|.|.|+
T Consensus       386 ~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~------~~~~~~~~~---~~~L~i~~v~~~D~G~Y~  456 (570)
T 3b43_A          386 VFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGK------KYKIMSENF---LTSIHILNVDSADIGEYQ  456 (570)
T ss_dssp             EECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSS------SEEEEEETT---EEEEEECSCCGGGCEEEE
T ss_pred             eeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCC------CEEEEEcCC---EEEEEECCCChhhCEEEE
Confidence            33334455667789999999999999999999999998876433      333333321   247999999999999999


Q ss_pred             EEEecCCCceeEEEEEEEEE
Q psy1672         336 CVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       336 C~a~N~~G~~~~~v~L~V~~  355 (600)
                      |.|.|..|.....+.|.|..
T Consensus       457 C~A~N~~G~~~~~~~l~v~~  476 (570)
T 3b43_A          457 CKASNDVGSDTCVGSITLKA  476 (570)
T ss_dssp             EEEECSSCEEEEEEEEEECC
T ss_pred             EEEEECCCeEEEEEEEEecc
Confidence            99999999998888887743

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.51  E-value=3.2e-07  Score=87.78  Aligned_cols=95  Identities=23%  Similarity=0.310  Sum_probs=69.3

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEE----cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYW----NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~----~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      +....+..|+.+.|.|.+.+.|.+.+.|++    +|..+......  ...............+.|.|.+++..|.|.|+|
T Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  202 (231)
T 3ojm_B          125 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLP--YLKVLKHSGINSSNAEVLALFNVTEADAGEYIC  202 (231)
T ss_dssp             SCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCB--CEEEEEECSTTCSCTTEEEECSCCGGGCEEEEE
T ss_pred             CCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcc--eEeEecccccccCCccEEEEecCCHHHCeEEEE
Confidence            345667889999999999999999999999    66655433210  111111111111223579999999999999999


Q ss_pred             EEecCCCceeEEEEEEEEEcc
Q psy1672         337 VAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       337 ~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      .|.|..|..+..+.|.|...+
T Consensus       203 ~a~n~~g~~~~~~~l~V~~~p  223 (231)
T 3ojm_B          203 KVSNYIGQANQSAWLTVLPKQ  223 (231)
T ss_dssp             EEEETTEEEEEEEEEEEECCC
T ss_pred             EEEeccceEeeEEEEEEecCC
Confidence            999999999999999987654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.50  E-value=9.9e-08  Score=90.97  Aligned_cols=91  Identities=20%  Similarity=0.119  Sum_probs=64.3

Q ss_pred             cccccccccceeeeE---eecCCCCeeEEEEcCeeccCCccc-----------CccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         263 YVEAVSSENATVVCR---VDSIPPAAISWYWNGRLLLNNTAF-----------SSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~---v~g~P~p~i~W~~~g~~l~~~~~~-----------~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      .+++..|+.++|.|.   +.+.|.+.|.|+++|.........           ....+..+...+   ....|.|.+++.
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~   78 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA---NTFFLVVTAANI   78 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEET---TEEEEEESSCCG
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcC---CEEEEEEccCCH
Confidence            467889999999994   567899999999976432211000           001111121111   235799999999


Q ss_pred             CCCeEEEEEEecCCCceeEEEEEEEEEc
Q psy1672         329 SDSGRFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      +|+|.|+|.|.|..|..+..+.|.|...
T Consensus        79 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~p  106 (203)
T 4fa8_A           79 SHDGNYLCRMKLGETEVTKQEHLSVVKP  106 (203)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             HHCeEEEEEEEcCCCcEEEEEEEEecCC
Confidence            9999999999999999998888888643

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.50  E-value=2.6e-07  Score=96.35  Aligned_cols=76  Identities=26%  Similarity=0.476  Sum_probs=64.7

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      ..+..|+.+.|.|.+.|.|.|.+.|+++|..+...       ++.+ .+      +.|.|.+++..|.|.|+|.|.|..|
T Consensus       319 ~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-------~~~~-~~------~~L~i~~~~~~d~G~Y~C~a~N~~G  384 (395)
T 1bih_A          319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-------RATV-TD------SGLVIKGVKNGDKGYYGCRATNEHG  384 (395)
T ss_dssp             EEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-------SEEE-ET------TEEEESSCCSTTCEEEEEEEEETTE
T ss_pred             eEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-------ceEE-EC------CEEEEeeCCcccCEEEEEEEEccCC
Confidence            56788999999999999999999999999877542       2222 22      2799999999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy1672         344 IADANFTLQV  353 (600)
Q Consensus       344 ~~~~~v~L~V  353 (600)
                      .....+.|.|
T Consensus       385 ~~~~~~~l~V  394 (395)
T 1bih_A          385 DKYFETLVQV  394 (395)
T ss_dssp             EEEEEEEEEE
T ss_pred             CceEEEEEEE
Confidence            9998888876

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=98.50  E-value=4.1e-08  Score=99.08  Aligned_cols=80  Identities=14%  Similarity=0.185  Sum_probs=63.4

Q ss_pred             ccccccccceeeeEeecCCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ..+..|+.++|.|.+.|.|+| .+.|++++..+.....         ..++     ..+.|.+++.+|+|.|+|+|.|.+
T Consensus       222 ~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~---------~~~~-----~~l~i~~v~~~d~G~Y~C~A~N~~  287 (308)
T 4fom_A          222 NWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLL---------ASDN-----TLHFVHPLTFNYSGVYICKVTNSL  287 (308)
T ss_dssp             CEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCB---------CSTT-----EEECCSCCCSCCCSEEEEEEEETT
T ss_pred             eeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEE---------EcCC-----eEEEECCCChhhCEEEEEEEEeCC
Confidence            445678899999999999988 6999998876643321         1111     246688999999999999999999


Q ss_pred             CceeEEEEEEEEEcc
Q psy1672         343 GIADANFTLQVTYRG  357 (600)
Q Consensus       343 G~~~~~v~L~V~~~~  357 (600)
                      |.++..+.|.|.+.|
T Consensus       288 G~~~~~~~l~V~~~P  302 (308)
T 4fom_A          288 GQRSDQKVIYISDPP  302 (308)
T ss_dssp             EEEEEEEECCEECCC
T ss_pred             CcEEEEEEEEEEcCC
Confidence            999999999887654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.49  E-value=3.8e-07  Score=95.41  Aligned_cols=138  Identities=24%  Similarity=0.312  Sum_probs=99.0

Q ss_pred             CCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcc
Q psy1672          62 QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKG  141 (600)
Q Consensus        62 ~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~  141 (600)
                      ..+....|.  ...+|+.+.+..+ +..+...+|.++..|+.+.+..+ ++.+....|.++.+|+.+.+..+ +..+...
T Consensus       206 ~~i~~~~f~--~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~  280 (379)
T 4h09_A          206 KTVTAYGFS--YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYL  280 (379)
T ss_dssp             CEECTTTTT--TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTT
T ss_pred             eEEeecccc--cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccc
Confidence            334444454  5677777777543 66677777777778888877654 77777777777777888777543 6677777


Q ss_pred             cccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCC
Q psy1672         142 AFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN  205 (600)
Q Consensus       142 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N  205 (600)
                      +|.++.+|+.+.+.++.++.|...+|.++.+|+.+.|..+ ++.|....|..+.+|+.+.+..+
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            7778888888888777777777778888888888887654 77777777777777777766443

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.48  E-value=1.8e-07  Score=86.77  Aligned_cols=75  Identities=9%  Similarity=0.089  Sum_probs=62.3

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...+..|+.++|.|.+.+.|.+.+.|++++..+.                   ...+.|.|.+++.+|.|.|+|.|.|..
T Consensus       106 ~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~-------------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~  166 (184)
T 2ny1_B          106 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------------------QGGKTLSVSQLELQDSGTWTCTVLQNQ  166 (184)
T ss_dssp             CSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE-------------------EESSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc-------------------cCceEEEEecCCcCCCeEEEEEEEECC
Confidence            3467889999999999999999999998764331                   112479999999999999999999999


Q ss_pred             CceeEEEEEEEEEc
Q psy1672         343 GIADANFTLQVTYR  356 (600)
Q Consensus       343 G~~~~~v~L~V~~~  356 (600)
                      |..+..+.|.|...
T Consensus       167 ~~~~~~~~l~V~~~  180 (184)
T 2ny1_B          167 KKVEFKIDIVVLAF  180 (184)
T ss_dssp             EEEEEEEEEEEECC
T ss_pred             ceEEEEEEEEEEec
Confidence            99988888888543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.48  E-value=2.8e-07  Score=98.10  Aligned_cols=97  Identities=20%  Similarity=0.282  Sum_probs=63.9

Q ss_pred             ccccCcc-----cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEE
Q psy1672         248 ADDFACK-----PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV  322 (600)
Q Consensus       248 ~~~~~C~-----p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~  322 (600)
                      .++|.|.     +.+...+..+++.+|+.+.|.|.+.+.|.+.|.|++++..+.....+..        +.  .....|.
T Consensus        37 ~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~--------~~--~~~~sL~  106 (423)
T 3qs7_E           37 PEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL--------QN--RGVVSMV  106 (423)
T ss_dssp             -------------------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC---------------CEEEEE
T ss_pred             HHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceecc--------cc--ceEEEEE
Confidence            3556773     2333445578899999999999999999999999998876553221100        00  1123689


Q ss_pred             EecCCCCCCeEEEEEEecCCCceeEEEEEEEE
Q psy1672         323 LTNAQESDSGRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       323 I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |.+++.+|.|.|+|.|.|..|.....+.|.|.
T Consensus       107 I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~  138 (423)
T 3qs7_E          107 ILKMTETQAGEYLLFIQSEATNYTILFTVSIR  138 (423)
T ss_dssp             ESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC
T ss_pred             EeecCcccCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            99999999999999999999998888888875

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.48  E-value=3.2e-07  Score=92.30  Aligned_cols=95  Identities=19%  Similarity=0.326  Sum_probs=68.3

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCC-CCCe
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE-SDSG  332 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~-~d~G  332 (600)
                      .|.+...+....+..|+.++|.|.+.|.|.+.|.|+++|..+....     .......++   ..+.|.|.+++. .|.|
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~-----~~~~~~~~~---~~~~L~i~~~~~~~D~G   77 (304)
T 2yd9_A            6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQR-----FETIEFDES---AGAVLRIQPLRTPRDEN   77 (304)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTT-----EEEEEETTT---TEEEEEECSCCTTTTCS
T ss_pred             CCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCc-----eEEEEecCC---CceEEEEecccccCCCe
Confidence            4566666777888999999999999999999999999988764321     111112222   125799999997 9999


Q ss_pred             EEEEEEecCCCceeEEEEEEEEEc
Q psy1672         333 RFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      .|+|.|.|..|..+..+.|.|...
T Consensus        78 ~Y~C~a~n~~g~~~~~~~l~V~~~  101 (304)
T 2yd9_A           78 VYECVAQNSVGEITVHAKLTVLRE  101 (304)
T ss_dssp             EEEEEEECSSCEECCEEEEEEECG
T ss_pred             EEEEEEECCCCeEEEEEEEEEecc
Confidence            999999999999888888888654

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=98.48  E-value=8.1e-07  Score=78.72  Aligned_cols=95  Identities=20%  Similarity=0.330  Sum_probs=65.0

Q ss_pred             ccccccccccccceeeeEeecCCC---CeeEEEEcCe--ecc---CCc-----cc-CccceEEEeeCCceeeeeeEEEec
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPP---AAISWYWNGR--LLL---NNT-----AF-SSYQRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~---p~i~W~~~g~--~l~---~~~-----~~-~~~~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      .+..+.+..|++++|.|.+.+.+.   +.+.|++++.  .+.   ...     .. ....|+.+..++.......|.|.+
T Consensus        12 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~   91 (139)
T 1pko_A           12 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   91 (139)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEcc
Confidence            345678889999999999986543   6899999653  110   000     00 012344444332112245899999


Q ss_pred             CCCCCCeEEEEEEecCCCceeEEEEEEEE
Q psy1672         326 AQESDSGRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       326 v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      ++.+|+|.|+|.+.|..|.....+.|.|.
T Consensus        92 v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  120 (139)
T 1pko_A           92 VRFSDEGGYTCFFRDHSYQEEAAVELKVE  120 (139)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCHHHCEEEEEEEEcCCCceEEEEEEEEe
Confidence            99999999999999999888888888886

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=98.47  E-value=2.9e-07  Score=86.64  Aligned_cols=91  Identities=16%  Similarity=0.154  Sum_probs=65.3

Q ss_pred             ccccccccccccceeeeEeecCCC-----CeeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPP-----AAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~-----p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .+..+.+..|+.+.|.|.+.+.|.     +.+.|++ ++.....      ..+..+..+........|.|.+++.+|.|.
T Consensus         8 p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~------~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~   81 (202)
T 3bp6_B            8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQ------SERATLLEEQLPLGKALFHIPSVQVRDSGQ   81 (202)
T ss_dssp             SCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCB------CSSCEECGGGGGGTEEEEEECSCCGGGCEE
T ss_pred             CCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCccccc------CCceEEeeccccCCeeEEEECCCCHHHCcE
Confidence            345677889999999999998886     8999999 4432221      123333332111123589999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEc
Q psy1672         334 FYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      |+|.|.|..|.....+.|.|...
T Consensus        82 Y~C~~~~~~~~~~~~~~l~V~~~  104 (202)
T 3bp6_B           82 YRCLVICGAAWDYKYLTVKVKAS  104 (202)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEBC
T ss_pred             EEEEEEeCCCcceEEEEEEecCC
Confidence            99999999998888888888643

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=98.47  E-value=2e-07  Score=88.00  Aligned_cols=100  Identities=23%  Similarity=0.367  Sum_probs=70.7

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+......... ......++. .....+.|.+++..|.|.
T Consensus         9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~G~   86 (212)
T 2v9r_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRS-HRMLLPSGS-LFFLRIVHGRKSRPDEGV   86 (212)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTC-SEEECTTSC-EEESSCCCCSSCCCSCEE
T ss_pred             CcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeecccccccc-ceEEecCCc-EEEEEEEecCCCcccCeE
Confidence            455666667788899999999999999999999999999877644321111 122222331 222346677889999999


Q ss_pred             EEEEEecCCCce-eEEEEEEEEE
Q psy1672         334 FYCVAENRAGIA-DANFTLQVTY  355 (600)
Q Consensus       334 Y~C~a~N~~G~~-~~~v~L~V~~  355 (600)
                      |+|.|.|..|.. ...+.+.|..
T Consensus        87 Y~C~~~n~~g~~~~~~~~l~V~~  109 (212)
T 2v9r_A           87 YVCVARNYLGEAVSHDASLEVAI  109 (212)
T ss_dssp             EEEEEEETTEEEECCCEEEEECE
T ss_pred             EEEEEECCCCceeecceEEEEEe
Confidence            999999998865 4456666644

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=98.47  E-value=2.8e-07  Score=88.14  Aligned_cols=87  Identities=23%  Similarity=0.415  Sum_probs=68.2

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ....+..|+.+.|.|.+.+.|.+.+.|+++++.+.....+.   ......     ..+.|.|.+++..|.|.|+|.|.|.
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~---~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~n~   98 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKVRN-----QHWSLIMESVVPSDKGNYTCVVENE   98 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTT---CCEEEG-----GGTEEEECSCCGGGCEEEEEEEEET
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCcccccccccc---ceeeec-----CcceEEEecCCcccCEEEEEEEecc
Confidence            55678899999999999999999999999998876443211   111111     1247999999999999999999999


Q ss_pred             CCceeEEEEEEEEEc
Q psy1672         342 AGIADANFTLQVTYR  356 (600)
Q Consensus       342 ~G~~~~~v~L~V~~~  356 (600)
                      .|.....+.+.|...
T Consensus        99 ~~~~~~~~~l~V~~~  113 (231)
T 3ojm_B           99 YGSINHTYHLDVVER  113 (231)
T ss_dssp             TEEEEEEEEEEEECC
T ss_pred             cCcccccEEEEEEcC
Confidence            998888888888643

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=98.46  E-value=4.4e-07  Score=83.93  Aligned_cols=90  Identities=26%  Similarity=0.374  Sum_probs=62.7

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....    ..+.....+      +.|.|.+++..|.|.|
T Consensus         3 ~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~------~~L~i~~~~~~d~G~Y   72 (189)
T 2v5t_A            3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS----DNRFAMLAN------NNLQILNINKSDEGIY   72 (189)
T ss_dssp             CEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCC----CTTEEECTT------SCEEETTCCGGGCEEE
T ss_pred             ceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceecc----CCeEEEecC------CCEEEeeCCHhHCcEE
Confidence            344455666788899999999999999999999999887654322    223333333      3799999999999999


Q ss_pred             EEEEecCCCcee--EEEEEEEE
Q psy1672         335 YCVAENRAGIAD--ANFTLQVT  354 (600)
Q Consensus       335 ~C~a~N~~G~~~--~~v~L~V~  354 (600)
                      +|.+.|..+...  ..+.+.+.
T Consensus        73 ~C~~~~~~~~~~~~~~~~l~v~   94 (189)
T 2v5t_A           73 RCEGRVEARGEIDFRDIIVIVN   94 (189)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEE
T ss_pred             EEEEEEcCCCceEEEEEEEEec
Confidence            999999986543  34444443

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.45  E-value=4e-07  Score=83.95  Aligned_cols=82  Identities=20%  Similarity=0.333  Sum_probs=63.9

Q ss_pred             ccccccccccccccccccceeeeEeecCCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      .|.+...+....+..|+.+.|.|.+.|.|.| .+.|++++..+.....                ..+.|.|.++  .|+|
T Consensus        98 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~----------------~~~~L~i~~~--~d~G  159 (182)
T 1rhf_A           98 VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP----------------SPSVLNVTGV--TQST  159 (182)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE----------------SSEEEEECCC--SSCE
T ss_pred             CCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC----------------CceEEEEecc--ccCe
Confidence            4555555566778899999999999999999 9999999887753320                1247888888  5889


Q ss_pred             EEEEEEecCCCcee-EEEEEEE
Q psy1672         333 RFYCVAENRAGIAD-ANFTLQV  353 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~-~~v~L~V  353 (600)
                      .|+|.|.|..|... ..+.|.|
T Consensus       160 ~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          160 MFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             EEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEECCCCCcccceEEEEe
Confidence            99999999999874 3666665

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.45  E-value=5e-07  Score=83.95  Aligned_cols=92  Identities=27%  Similarity=0.446  Sum_probs=67.8

Q ss_pred             ccccccccccccccccceeeeEeecCC-CCeeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P-~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .+...+....+..|+.++|.|.+.+.+ .+.+.|++ +++.+....     .++.+....  ...+.|.|.+++..|.|.
T Consensus         4 ~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~-----~~~~~~~~~--~~~~~L~i~~~~~~d~G~   76 (191)
T 1epf_A            4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ-----QRISVVWND--DDSSTLTIYNANIDDAGI   76 (191)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBS-----SSEEEEEEE--TTEEEEEECSCCGGGCEE
T ss_pred             EEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCC-----CeEEEEECC--CCceEEEEccCCcccCEE
Confidence            344456677788999999999999876 78999999 887765321     233332211  123589999999999999


Q ss_pred             EEEEEecCCC-ceeEEEEEEEE
Q psy1672         334 FYCVAENRAG-IADANFTLQVT  354 (600)
Q Consensus       334 Y~C~a~N~~G-~~~~~v~L~V~  354 (600)
                      |+|.|.|..| ..+..+.|.|.
T Consensus        77 Y~C~~~~~~~~~~~~~~~l~v~   98 (191)
T 1epf_A           77 YKCVVTAEDGTQSEATVNVKIF   98 (191)
T ss_dssp             EEEEEEETTTEEEEEEEEEEEE
T ss_pred             EEEEEEcCCCcceEEEEEEEee
Confidence            9999999984 55666667664

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.43  E-value=4.4e-07  Score=85.57  Aligned_cols=88  Identities=23%  Similarity=0.422  Sum_probs=61.8

Q ss_pred             cccccccccccceeeeE-eecCCCCeeEEEEcCe-eccCCcccCc---cceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         261 SRYVEAVSSENATVVCR-VDSIPPAAISWYWNGR-LLLNNTAFSS---YQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~-v~g~P~p~i~W~~~g~-~l~~~~~~~~---~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      .....+..|+.+.|.|. +.+.|.+.+.|++++. .+........   ..+.....     ..+.|.|.+++..|.|.|+
T Consensus       111 ~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~  185 (212)
T 1f97_A          111 SVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDP-----KSGDLIFDPVTAFDSGEYY  185 (212)
T ss_dssp             ECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECT-----TTCCEEESSCCGGGCEEEE
T ss_pred             CCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecC-----CCceEEEEecChhhCcEEE
Confidence            33456778999999999 7899999999999998 7654321100   01111111     1347999999999999999


Q ss_pred             EEEecCCCceeE--EEEEEE
Q psy1672         336 CVAENRAGIADA--NFTLQV  353 (600)
Q Consensus       336 C~a~N~~G~~~~--~v~L~V  353 (600)
                      |.|.|..|....  .+.|.|
T Consensus       186 C~a~n~~g~~~~s~~~~l~V  205 (212)
T 1f97_A          186 CQAQNGYGTAMRSEAAHMDA  205 (212)
T ss_dssp             EEEECSSSCCEECCCEEEEE
T ss_pred             EEEccccCCccccceEEEEE
Confidence            999999999844  455554

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.43  E-value=9.7e-07  Score=84.75  Aligned_cols=94  Identities=21%  Similarity=0.307  Sum_probs=63.3

Q ss_pred             cccccccccccceeeeEeecCCCC---eeEEEEcCee-----------ccCCcccCccceEEEeeCCceeeeeeEEEecC
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPA---AISWYWNGRL-----------LLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p---~i~W~~~g~~-----------l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      ...+.+..|+.++|.|.+.+.+.+   .|.|++++..           +..........+......+.......|.|.++
T Consensus        11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   90 (226)
T 4f80_A           11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV   90 (226)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSC
T ss_pred             CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeC
Confidence            345778899999999999876654   6999986532           11111111122333333322223468999999


Q ss_pred             CCCCCeEEEEEEecCCCceeEEEEEEEE
Q psy1672         327 QESDSGRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      +..|.|.|+|.|.|..|..+..+.+.+.
T Consensus        91 ~~~D~G~Y~C~a~n~~~~~~~~v~~~~~  118 (226)
T 4f80_A           91 TASDSGKYLCYFQDGDFYEKALVELKVA  118 (226)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             chHHCeeEEEEEECCCcEEEEEEEEeec
Confidence            9999999999999999887776666554

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.42  E-value=5.9e-08  Score=99.75  Aligned_cols=91  Identities=14%  Similarity=0.184  Sum_probs=41.7

Q ss_pred             cccccccceeeeEee----cCCCCeeEEEEcCeeccCC-cccCccceEEEeeCCceeeeeeEEEecCCCCCC-eEEEEEE
Q psy1672         265 EAVSSENATVVCRVD----SIPPAAISWYWNGRLLLNN-TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS-GRFYCVA  338 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~----g~P~p~i~W~~~g~~l~~~-~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~-G~Y~C~a  338 (600)
                      .+..|+.+.|.|.+.    |.|.+.+.|+++++.+... ..+....+......+.....+.|.|.+++.+|. |.|+|.|
T Consensus       237 ~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a  316 (349)
T 4dep_C          237 EKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHA  316 (349)
T ss_dssp             --------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEE
T ss_pred             EEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEE
Confidence            778899999999999    5789999999999877641 111111111111112223356799999999999 9999999


Q ss_pred             ecCCCceeEEEEEEEEE
Q psy1672         339 ENRAGIADANFTLQVTY  355 (600)
Q Consensus       339 ~N~~G~~~~~v~L~V~~  355 (600)
                      .|..|.....+.|.|..
T Consensus       317 ~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          317 RSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             ECSSCEEEEECC-----
T ss_pred             EcCCCcEEEEEEEeeec
Confidence            99999999998888853

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=98.42  E-value=4.1e-07  Score=91.55  Aligned_cols=88  Identities=22%  Similarity=0.355  Sum_probs=64.0

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+.......         .+    ...|.|.++  .|+|.|
T Consensus       206 P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~---------~~----~~~L~i~~~--~d~G~Y  270 (304)
T 2yd9_A          206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP---------VG----RNVLELTDV--KDSANY  270 (304)
T ss_dssp             EEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCC---------BS----EEEEEECSC--CSCEEE
T ss_pred             CcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCccccc---------CC----cEEEEEccc--ccCEEE
Confidence            444444555678899999999999999999999999998876543110         11    224666655  589999


Q ss_pred             EEEEecCCCceeEEEEEEEEEcc
Q psy1672         335 YCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      +|.|.|..|.....+.|.|...+
T Consensus       271 ~C~a~N~~G~~~~~~~l~V~~~~  293 (304)
T 2yd9_A          271 TCVAMSSLGVIEAVAQITVKSLP  293 (304)
T ss_dssp             EEEEEETTEEEEEEEEEC-----
T ss_pred             EEEEEeCCCcEEEEEEEEEecCc
Confidence            99999999999999988886543

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.42  E-value=5.5e-07  Score=99.53  Aligned_cols=91  Identities=18%  Similarity=0.424  Sum_probs=69.5

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+........+..|+.+.|.|.+.|.|++.+.|++++..+....     .++.+...+   ..+.|.|.+++..|+|.|
T Consensus       478 P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~-----~~~~~~~~~---~~~~L~i~~~~~~d~G~Y  549 (570)
T 3b43_A          478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES-----DNIWISYSE---NIATLQFSRAEPANAGKY  549 (570)
T ss_dssp             CEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCT-----TTEEECCCS---SEEEEEESSCCTTCCEEE
T ss_pred             CcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCC-----CeEEEEECC---CEEEEEECcCCHHHCEEE
Confidence            333334455667889999999999999999999999875443221     123332222   235899999999999999


Q ss_pred             EEEEecCCCceeEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V  353 (600)
                      +|.|.|.+|.++..+.|.|
T Consensus       550 ~C~a~N~~G~~~~~a~L~V  568 (570)
T 3b43_A          550 TCQIKNEAGTQECFATLSV  568 (570)
T ss_dssp             EEEEECSSCEEEEEEEECC
T ss_pred             EEEEEECCcEEEEEEEEEE
Confidence            9999999999999988876

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=98.42  E-value=4.5e-07  Score=86.21  Aligned_cols=97  Identities=27%  Similarity=0.488  Sum_probs=69.5

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+.+|+.+.|.|.+.+.|.+.|.|++++..+......  ..+. ...++.  ....+.|.+++..|.|.
T Consensus         9 ~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~--~~~~-~~~~~~--~~~~l~i~~v~~~d~G~   83 (217)
T 2vr9_A            9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKK--SHRV-QFKDGA--LFFYRTMQGKKEQDGGE   83 (217)
T ss_dssp             CCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSS--SSEE-ECTTSC--EEESSCCBSSSCBCCEE
T ss_pred             CCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCcc--ceeE-EecCCc--eEEEEEeccCCcccCce
Confidence            456666667788899999999999999999999999999887654211  1122 222221  12245788999999999


Q ss_pred             EEEEEecCCCce-eEEEEEEEEE
Q psy1672         334 FYCVAENRAGIA-DANFTLQVTY  355 (600)
Q Consensus       334 Y~C~a~N~~G~~-~~~v~L~V~~  355 (600)
                      |+|.|.|..|.. ...+.+.|..
T Consensus        84 Y~C~~~n~~g~~~~~~~~l~v~~  106 (217)
T 2vr9_A           84 YWCVAKNRVGQAVSRHASLQIAV  106 (217)
T ss_dssp             EEEEEEETTEEEECCCEEEEECE
T ss_pred             EEEEEecCCCccccccceEEEEE
Confidence            999999998865 3345565543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=98.41  E-value=4.2e-07  Score=101.71  Aligned_cols=75  Identities=20%  Similarity=0.322  Sum_probs=64.9

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +....+..|+.+.|.|.+.|.|.+.+.|+++|..+...                    ..|.|.+++..|.|.|+|.|.|
T Consensus       566 ~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~--------------------~~L~i~~~~~~d~G~Y~C~a~N  625 (642)
T 1e07_A          566 PPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT--------------------QVLFIAKITPNNNGTYACFVSN  625 (642)
T ss_pred             CCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECccC--------------------ceEEECcccccCCeEEEEEEEe
Confidence            34566788999999999999999999999998766431                    2689999999999999999999


Q ss_pred             CCCceeEEEEEEEEE
Q psy1672         341 RAGIADANFTLQVTY  355 (600)
Q Consensus       341 ~~G~~~~~v~L~V~~  355 (600)
                      ..|.+..++.|.|..
T Consensus       626 ~~G~~~~s~~l~V~v  640 (642)
T 1e07_A          626 LATGRNNSIVKSITV  640 (642)
T ss_pred             cccCcceeEEEEEEE
Confidence            999999888888854

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.41  E-value=3.3e-07  Score=84.98  Aligned_cols=87  Identities=14%  Similarity=0.178  Sum_probs=62.6

Q ss_pred             cccccccccceeeeEeec--CCCCeeEEEEcCeeccCC----cccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         263 YVEAVSSENATVVCRVDS--IPPAAISWYWNGRLLLNN----TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g--~P~p~i~W~~~g~~l~~~----~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      .+.+.+|+.++|.|...+  .+.+.|.|++++..+...    ..+....+..+..++      .|.|.+++.+|+|.|+|
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~g------sL~I~~v~~~D~G~Y~C   78 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG------DLKIKNLTRDDSGTYNV   78 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS------CEEESSCCGGGCEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCC------cEEEcccccccCEEEEE
Confidence            456788999999995443  566799999988654310    111122344444443      69999999999999999


Q ss_pred             EEecCCCce--eEEEEEEEEE
Q psy1672         337 VAENRAGIA--DANFTLQVTY  355 (600)
Q Consensus       337 ~a~N~~G~~--~~~v~L~V~~  355 (600)
                      .|.|..|..  +..+.|.|..
T Consensus        79 ~~~n~~g~~~~~~~~~l~V~~   99 (176)
T 1hng_A           79 TVYSTNGTRILNKALDLRILE   99 (176)
T ss_dssp             EEEETTCCEEEEEEEEEEEEC
T ss_pred             EEEeCCCCEEEEEEEEEEEeC
Confidence            999999986  6667777754

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.41  E-value=1.4e-07  Score=89.70  Aligned_cols=76  Identities=13%  Similarity=0.202  Sum_probs=58.2

Q ss_pred             ccccccccceeeeEeecC-CCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec-C
Q psy1672         264 VEAVSSENATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN-R  341 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N-~  341 (600)
                      ..+.+|+.++|.|.+.+. |.+.+.|+++|+.+....                 ..+.|.|.+++.+|.|.|+|.|.| .
T Consensus        98 ~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~-----------------~~~~L~i~~v~~~D~G~Y~C~a~n~~  160 (204)
T 3sgj_C           98 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH-----------------HNSDFYIPKATLKDSGSYFCRGLVGS  160 (204)
T ss_dssp             SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE-----------------ECCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc-----------------CCceEEECcCCcccCEEEEEEEEeCC
Confidence            567789999999999755 568999999987653110                 124799999999999999999999 4


Q ss_pred             CCceeEEEEEEEEEc
Q psy1672         342 AGIADANFTLQVTYR  356 (600)
Q Consensus       342 ~G~~~~~v~L~V~~~  356 (600)
                      .+..+..+.|.|...
T Consensus       161 ~~~~s~~~~l~V~~~  175 (204)
T 3sgj_C          161 KNVSSETVQITITQG  175 (204)
T ss_dssp             EEEECCCEEEEEEC-
T ss_pred             CceecCcEEEEEeCc
Confidence            445566677777543

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=98.40  E-value=7e-07  Score=86.28  Aligned_cols=88  Identities=27%  Similarity=0.467  Sum_probs=68.8

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +..+.+..|+.+.|.|.+.+.|.+.+.|+++++.+.......   ......     ....|.|.+++..|.|.|+|.|.|
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~---~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~~   93 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG---GIKLRH-----QQWSLVMESVVPSDRGNYTCVVEN   93 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTT---CCEEEG-----GGTEEEECSCCGGGCEEEEEEEEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCccc---ceeeec-----cceEEEEEeCCcccCEEEEEEEee
Confidence            345778899999999999999999999999998876443211   111111     124799999999999999999999


Q ss_pred             CCCceeEEEEEEEEEc
Q psy1672         341 RAGIADANFTLQVTYR  356 (600)
Q Consensus       341 ~~G~~~~~v~L~V~~~  356 (600)
                      ..|.....+.+.|...
T Consensus        94 ~~~~~~~~~~l~V~~~  109 (241)
T 3grw_A           94 KFGSIRQTYTLDVLER  109 (241)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             cCCceEEEEEEEEecc
Confidence            9998888888888653

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.40  E-value=3.9e-07  Score=85.91  Aligned_cols=80  Identities=16%  Similarity=0.227  Sum_probs=61.3

Q ss_pred             ccccccccccceeeeEe-ecCCCCeeEEEEcCe--eccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         262 RYVEAVSSENATVVCRV-DSIPPAAISWYWNGR--LLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v-~g~P~p~i~W~~~g~--~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      ....+..|+.+.|.|.+ .+.|.+.+.|++++.  .+......             ....+.|.|.+++.+|.|.|+|.|
T Consensus       129 ~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~-------------~~~~~~L~i~~~~~~d~G~Y~C~a  195 (214)
T 3jz7_A          129 VDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA-------------EMTSPVISVKNASSEYSGTYSCTV  195 (214)
T ss_dssp             EESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGG-------------GTTSSEEEECSCCGGGCEEEEEEE
T ss_pred             eecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCcccee-------------ccCCCEEEEecCCHHHCEEEEEEE
Confidence            33447789999999999 799999999999543  22211100             001237999999999999999999


Q ss_pred             ecCCCceeEEEEEEEE
Q psy1672         339 ENRAGIADANFTLQVT  354 (600)
Q Consensus       339 ~N~~G~~~~~v~L~V~  354 (600)
                      .|..|..+..+.|.|.
T Consensus       196 ~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          196 QNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             ECSSCEEEEEEEECCB
T ss_pred             EcCCCcEEEEEEEEEe
Confidence            9999999888888774

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=98.39  E-value=4.2e-07  Score=91.38  Aligned_cols=79  Identities=20%  Similarity=0.342  Sum_probs=63.7

Q ss_pred             ccccccccceeeeEeecCCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ..+..|+.+.|.|.+.+.|.+ .+.|+++++.+.....      ..+. .+    .+.|.|.+++.+|.|.|+|.|.|..
T Consensus       231 ~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~------~~~~-~~----~~~L~I~~v~~~d~G~Y~C~a~N~~  299 (312)
T 2y23_A          231 WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK------HDFK-DG----ICTLLITEFSKKDAGIYEVILKDDR  299 (312)
T ss_dssp             EEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECC------C-----C----EEEEEECSCSGGGCEEEEEEEESTT
T ss_pred             EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCc------EEEE-CC----EEEEEECcCCHHHCEEEEEEEEcCC
Confidence            567889999999999999988 9999999988764321      1111 11    3589999999999999999999999


Q ss_pred             CceeEEEEEEE
Q psy1672         343 GIADANFTLQV  353 (600)
Q Consensus       343 G~~~~~v~L~V  353 (600)
                      |.....+.|.+
T Consensus       300 G~~~~~~~l~i  310 (312)
T 2y23_A          300 GKDKSRLKLVD  310 (312)
T ss_dssp             CCEEEEEEECS
T ss_pred             CceeeeeEEEe
Confidence            99998887754

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.39  E-value=4.2e-07  Score=85.73  Aligned_cols=77  Identities=21%  Similarity=0.428  Sum_probs=60.7

Q ss_pred             ccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCce
Q psy1672         266 AVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA  345 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~  345 (600)
                      +..|+.+.|.|.+.+.| +.+.|+++++.+....      ++.+..++     +.|.|.+++..|.|.|+|.|.|..|..
T Consensus       122 ~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~------~~~~~~~~-----~~L~i~~v~~~d~G~Y~C~a~N~~g~~  189 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTE------RMTLSQNN-----SILRIDPIKREDAGEYQCEISNPVSVR  189 (208)
T ss_dssp             CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCS------SEEEETTT-----TEEEESSCCGGGCEEEEEEEECTTCCE
T ss_pred             EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCC------CeEEcCCC-----CEEEEeccCHHhCeEEEEEEecCCCcc
Confidence            78899999999999866 7999999998776432      33333332     479999999999999999999999986


Q ss_pred             e-EEEEEEEE
Q psy1672         346 D-ANFTLQVT  354 (600)
Q Consensus       346 ~-~~v~L~V~  354 (600)
                      . ..+.|.|.
T Consensus       190 ~s~~~~l~v~  199 (208)
T 3r4d_A          190 RSNSIKLDII  199 (208)
T ss_dssp             ECCCEEECCC
T ss_pred             cCCceeeeEE
Confidence            4 44666553

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=98.39  E-value=1.1e-06  Score=83.81  Aligned_cols=82  Identities=12%  Similarity=0.236  Sum_probs=60.4

Q ss_pred             cccccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         261 SRYVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      +..+++.+|+.+.|.|.+. +.|.|+|.|+++|+.+.....    .++..  ++. .....|.|.+++.+|+|.|+|.|.
T Consensus         9 ~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~----~~~~~--~~~-~g~~~L~I~~v~~~D~G~Y~C~a~   81 (207)
T 3rbs_A            9 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPK----YKMHI--DRN-TGIIEMFMEKLQDEDEGTYTFQLQ   81 (207)
T ss_dssp             EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSS----CEEEE--CTT-TCEEEEEESCCCGGGCEEEEEEEE
T ss_pred             CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCC----EEEEE--eCC-CCEEEEEECCCChhhCEEEEEEEE
Confidence            3457788999999999997 579999999999998865431    12222  210 112369999999999999999999


Q ss_pred             cCCCceeEEEEE
Q psy1672         340 NRAGIADANFTL  351 (600)
Q Consensus       340 N~~G~~~~~v~L  351 (600)
                      |  |.+.....+
T Consensus        82 N--g~a~~~~~~   91 (207)
T 3rbs_A           82 D--GKATNHSTV   91 (207)
T ss_dssp             E--TTEEEEEEE
T ss_pred             C--CCeEEEEEE
Confidence            9  555544444

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.39  E-value=4.4e-07  Score=88.13  Aligned_cols=91  Identities=21%  Similarity=0.423  Sum_probs=60.2

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceE---------EEeeC--Ccee--eeeeEEEecCC
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRI---------FVIEQ--GEYE--RKSSLVLTNAQ  327 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~---------~~~~~--g~~~--~~s~L~I~~v~  327 (600)
                      +..+.+.+|+.+.|.|.+.+.|.|.|.|++++..+.....+. +..+         .....  ....  ..+.|.|.+++
T Consensus       143 ~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  221 (250)
T 2fbo_J          143 AEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGT-YQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAK  221 (250)
T ss_dssp             CSEEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCE-EEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCC
T ss_pred             CceEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCc-ceeEeccCCCCccccCceEecccccCCccEEEEecCC
Confidence            345667789999999999999999999999988764322110 0000         00000  0000  12589999999


Q ss_pred             CCCCeEEEEEEecCCC---ceeEEEEEE
Q psy1672         328 ESDSGRFYCVAENRAG---IADANFTLQ  352 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~~G---~~~~~v~L~  352 (600)
                      .+|.|.|+|.|.|.+|   .....+.|.
T Consensus       222 ~~D~G~Y~C~a~N~~g~~g~~~~~~~l~  249 (250)
T 2fbo_J          222 ITDAGRVWCELATGQGELDADRSSTILK  249 (250)
T ss_dssp             GGGCEEEEEEEESSSSGGGEEEEEEEEE
T ss_pred             cccCEEEEEEecCCccccCccceeEEEe
Confidence            9999999999999655   444444443

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.39  E-value=7.5e-07  Score=84.48  Aligned_cols=80  Identities=13%  Similarity=0.194  Sum_probs=60.6

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcC-eeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNG-RLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g-~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      +.+.+|+.++|.|.+.|.|.|.|.|.+.. ..+.        .+... ..    ..+.|.|.+++..|.|.|+|.|.|..
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~--------~~~~~-~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~   77 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN--------GKVTN-EG----TTSTLTMNPVSFGNEHSYLCTATCES   77 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS--------SEEEE-ET----TEEEEEESSCCGGGCSEEEEEEEETT
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc--------ceEEE-cC----CccEEEECcCCHHHCEEEEEEEEECC
Confidence            34558999999999999999999998832 1111        11111 11    12469999999999999999999999


Q ss_pred             CceeEEEEEEEEEc
Q psy1672         343 GIADANFTLQVTYR  356 (600)
Q Consensus       343 G~~~~~v~L~V~~~  356 (600)
                      |..+..+.|.|...
T Consensus        78 ~~~~~~~~l~V~~~   91 (202)
T 1vca_A           78 RKLEKGIQVEIYSF   91 (202)
T ss_dssp             EEEEEEEEEEEEBC
T ss_pred             ceEeeEEEEEEEeC
Confidence            98888888888654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.38  E-value=6.4e-08  Score=107.32  Aligned_cols=154  Identities=13%  Similarity=0.046  Sum_probs=80.3

Q ss_pred             ceEEEeeCCCCCC-CChhhhcccCCCCccEEEeec-----------ccCcccCc-cccCCCCCccEEEccCCCCCCCCcc
Q psy1672          51 TQVLDMSGNNLQI-LPKEAFRRAGLLNLQKLFLAR-----------CHIGQIDS-GALDGLTNLIEIDLSDNLLTSIPSL  117 (600)
Q Consensus        51 l~~L~Ls~n~L~~-l~~~~f~~~~l~~L~~L~L~~-----------n~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l~~~  117 (600)
                      +++|+++ +.+.. .....+.  .+++|++|+|++           +.++.... ..+.++++|++|+++.|.++.....
T Consensus       320 L~~L~L~-~~~~~~~l~~~~~--~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~  396 (592)
T 3ogk_B          320 LEVLETR-NVIGDRGLEVLAQ--YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE  396 (592)
T ss_dssp             CCEEEEE-GGGHHHHHHHHHH--HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred             CCEEecc-CccCHHHHHHHHH--hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence            7788877 33331 1122222  467777777773           34443211 1133467777777776666643222


Q ss_pred             ccC-CCCCCCEEEcc----CCCCCccCc-----ccccCCCCcceeeCCCCc--CcccChhhh-cCCCCCCEEEcCCCcCC
Q psy1672         118 TFQ-SVRFLRDLNLA----RNPISKIEK-----GAFQFVPGLVKLDMSESR--LEHISPEAF-TGAKSLESIKLNGNRLS  184 (600)
Q Consensus       118 ~f~-~l~~L~~L~Ls----~N~i~~l~~-----~~~~~l~~L~~L~Ls~n~--l~~i~~~~~-~~l~~L~~L~Ls~N~l~  184 (600)
                      .+. .+++|+.|+++    .|.++..+.     ..+..+++|+.|+++.|.  +.......+ ..+++|+.|+|++|.++
T Consensus       397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~  476 (592)
T 3ogk_B          397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES  476 (592)
T ss_dssp             HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS
T ss_pred             HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC
Confidence            222 25667777775    455554311     124456667777765432  333222222 23666777777776665


Q ss_pred             CCC-cccccccccccEEEccCCcC
Q psy1672         185 HFP-VRSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       185 ~l~-~~~~~~l~~L~~L~l~~N~~  207 (600)
                      ... ...+..+++|+.|++.+|++
T Consensus       477 ~~~~~~~~~~~~~L~~L~l~~n~l  500 (592)
T 3ogk_B          477 DEGLMEFSRGCPNLQKLEMRGCCF  500 (592)
T ss_dssp             HHHHHHHHTCCTTCCEEEEESCCC
T ss_pred             HHHHHHHHhcCcccCeeeccCCCC
Confidence            422 12234556677777777664

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=98.38  E-value=5.6e-07  Score=86.07  Aligned_cols=85  Identities=16%  Similarity=0.313  Sum_probs=68.3

Q ss_pred             cccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         253 CKPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       253 C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      ..+.+...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+....                  .+.|.|.+++..|.|
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~------------------~~~L~i~~v~~~d~G   78 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN------------------TSELIFNAVHVKDAG   78 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC------------------SSEEEETTCCGGGCE
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC------------------CCEEEEccCChhhCe
Confidence            34666677788889999999999999999999999999987764321                  237999999999999


Q ss_pred             EEEEEEecCCCce-eEEEEEEEEE
Q psy1672         333 RFYCVAENRAGIA-DANFTLQVTY  355 (600)
Q Consensus       333 ~Y~C~a~N~~G~~-~~~v~L~V~~  355 (600)
                      .|+|.|.|..|.. +..+.|.|..
T Consensus        79 ~Y~C~~~n~~~~~~s~~~~l~V~~  102 (218)
T 3k0w_A           79 FYVCRVNNNFTFEFSQWSQLDVCD  102 (218)
T ss_dssp             EEEEEEECTTCCEECCCEEEEEEC
T ss_pred             EeEEEEEcCCCCceeeEEEEEEEc
Confidence            9999999998865 4556676643

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.37  E-value=4.2e-07  Score=92.58  Aligned_cols=92  Identities=23%  Similarity=0.295  Sum_probs=67.6

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEE----cCeeccCCcccCccceEEEeeCCc----eeeeeeEEEecCCCCCCeE
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYW----NGRLLLNNTAFSSYQRIFVIEQGE----YERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~----~g~~l~~~~~~~~~~~~~~~~~g~----~~~~s~L~I~~v~~~d~G~  333 (600)
                      ....+..|+.+.|.|.+.|.|.+.+.|++    +|..+.....    ....+...+.    ....+.|.|.+++..|.|.
T Consensus       230 ~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  305 (334)
T 1ry7_B          230 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT----PYVTVLKTAGANTTDKELEVLSLHNVTFEDAGE  305 (334)
T ss_dssp             CCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSS----BCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSE
T ss_pred             CceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCC----eeEEEeecCccccccccccEEEEccCCHHHCEE
Confidence            45567889999999999999999999999    6665543221    0011111110    0112479999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEcc
Q psy1672         334 FYCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      |+|.|.|..|.....+.|.|...+
T Consensus       306 Y~C~a~N~~G~~~~~~~l~V~~~~  329 (334)
T 1ry7_B          306 YTCLAGNSIGFSHHSAWLVVLPAE  329 (334)
T ss_dssp             EEEEEEESSCCEEEEEEEEEECSC
T ss_pred             EEEEEeCCCCeEEEEEEEEEEECC
Confidence            999999999999999999986544

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.37  E-value=6.5e-07  Score=85.43  Aligned_cols=87  Identities=16%  Similarity=0.208  Sum_probs=60.4

Q ss_pred             ccccccccceeeeEe-ecCCCCeeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         264 VEAVSSENATVVCRV-DSIPPAAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v-~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..+..|+.++|.|.+ .+.|.+.+.|++ ++..+....      .......+. .....|.|.+++..|.|.|+|.|.|.
T Consensus       120 ~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~------~~~~~~~~~-~~~~~l~i~~v~~~d~G~Y~C~a~n~  192 (222)
T 4i0k_A          120 KDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNV------TTSQMANER-GLFDVHSVLRVVLGANGTYSCLVRNP  192 (222)
T ss_dssp             ----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEE------EEEEEECTT-SCEEEEEEEEEECCTTCEEEEEEEET
T ss_pred             ceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCc------ceeEEcCCC-CeEEEEEEEEEEeCCCCEEEEEEECC
Confidence            356789999999999 789999999998 554443211      111111111 11235789999999999999999999


Q ss_pred             CCceeEEEEEEEEEcc
Q psy1672         342 AGIADANFTLQVTYRG  357 (600)
Q Consensus       342 ~G~~~~~v~L~V~~~~  357 (600)
                      .|.....+.|.|...+
T Consensus       193 ~g~~~~~~~l~V~~~p  208 (222)
T 4i0k_A          193 VLQQDAHGSVTITGQP  208 (222)
T ss_dssp             TTTEEEEEEEECCC--
T ss_pred             CCCCceEEEEEEeCCc
Confidence            9999999999886554

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=98.37  E-value=9.2e-07  Score=75.54  Aligned_cols=86  Identities=15%  Similarity=0.125  Sum_probs=59.8

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCC-----------ccc--CccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNN-----------TAF--SSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~-----------~~~--~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ...+.+|+++.|.|.....+.+.+.|++........           ...  .-.+|..++.+|      +|.|.+++.+
T Consensus         9 p~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ng------SL~I~nvt~~   82 (111)
T 2qsq_A            9 PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA------SLLIQNIIQN   82 (111)
T ss_dssp             SSEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTS------CEEECSCCGG
T ss_pred             cceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCC------cEEEccCccc
Confidence            346789999999998643344579999854321100           000  012455555555      8999999999


Q ss_pred             CCeEEEEEEecCCC-ceeEEEEEEEE
Q psy1672         330 DSGRFYCVAENRAG-IADANFTLQVT  354 (600)
Q Consensus       330 d~G~Y~C~a~N~~G-~~~~~v~L~V~  354 (600)
                      |+|.|+|.+.|..+ ..+..+.|.|.
T Consensus        83 D~G~Ytc~v~~~~~~~~~~~~~L~V~  108 (111)
T 2qsq_A           83 DAGFYTLHVIKSDLVNEEATGQFRVY  108 (111)
T ss_dssp             GCEEEEEEEEETTSCCEEEEEEEEEE
T ss_pred             CCeEEEEEEEeCCCcEEEEEEEEEEe
Confidence            99999999999977 46777888774

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.36  E-value=2.2e-07  Score=86.15  Aligned_cols=65  Identities=18%  Similarity=0.183  Sum_probs=53.1

Q ss_pred             cccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEE
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN  348 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~  348 (600)
                      +..++|.|.+.|.|.|.|.|+++|+.+....                    .+.|.+++..|.|.|+|.|.|.+|..+..
T Consensus       110 ~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~--------------------~~~i~~~~~~d~G~Y~C~a~N~~g~~~~~  169 (176)
T 1hng_A          110 CSNATLTCEVLEGTDVELKLYQGKEHLRSLR--------------------QKTMSYQWTNLRAPFKCKAVNRVSQESEM  169 (176)
T ss_dssp             TTTTEEEEECSSCSSCEEEEEETTEEEEEES--------------------SSEEEEECSCCSSCEEEEEEETTEEEEEE
T ss_pred             CCcEEEEEEecCCCCcEEEEEECCEECCCCC--------------------cEEEEEEEccCCeEEEEEEEecCCCceec
Confidence            4569999999999999999999987664321                    24556788999999999999999998887


Q ss_pred             EEEEE
Q psy1672         349 FTLQV  353 (600)
Q Consensus       349 v~L~V  353 (600)
                      +.|.|
T Consensus       170 ~~l~~  174 (176)
T 1hng_A          170 EVVNC  174 (176)
T ss_dssp             ECCCC
T ss_pred             ccccC
Confidence            76654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.36  E-value=9.8e-08  Score=105.80  Aligned_cols=151  Identities=11%  Similarity=0.069  Sum_probs=86.4

Q ss_pred             ceEEEeeCCC-CC--CCChhhhcccCCCCccEEEeecccCcccCc----cccCCCCCccEEEccCCCCCCCCcc----cc
Q psy1672          51 TQVLDMSGNN-LQ--ILPKEAFRRAGLLNLQKLFLARCHIGQIDS----GALDGLTNLIEIDLSDNLLTSIPSL----TF  119 (600)
Q Consensus        51 l~~L~Ls~n~-L~--~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~----~~f~~l~~L~~L~Ls~N~l~~l~~~----~f  119 (600)
                      +++|+|++|. +.  .+.. ...  .+++|++|+|++|.+.....    ..+..+++|++|+|++|.++.+...    .+
T Consensus       140 L~~L~L~~~~~~~~~~l~~-~~~--~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~  216 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLS-IVT--HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA  216 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHH-HHH--HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH
T ss_pred             CcEEECcCCCCcCHHHHHH-HHh--hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH
Confidence            8889998876 21  1111 111  57888999998887655422    2345678888888888888744432    23


Q ss_pred             CCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCc---ccChhhhcCCCCCCEEEcCCCcCCCCCccccccccc
Q psy1672         120 QSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLE---HISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK  196 (600)
Q Consensus       120 ~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~---~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  196 (600)
                      ..+++|+.|+|++|.+..+. ..+..+++|+.|+++.....   ......+..+.+|+.|+++++....++ ..+..+++
T Consensus       217 ~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~-~~~~~~~~  294 (592)
T 3ogk_B          217 RNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP-ILFPFAAQ  294 (592)
T ss_dssp             HHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGG-GGGGGGGG
T ss_pred             hhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHH-HHHhhcCC
Confidence            45788888888888777653 45666777777777642211   001122334445555555443333332 22334444


Q ss_pred             ccEEEccCCc
Q psy1672         197 LMMIELHDNP  206 (600)
Q Consensus       197 L~~L~l~~N~  206 (600)
                      |+.|++.+|.
T Consensus       295 L~~L~Ls~~~  304 (592)
T 3ogk_B          295 IRKLDLLYAL  304 (592)
T ss_dssp             CCEEEETTCC
T ss_pred             CcEEecCCCc
Confidence            5555554444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.36  E-value=1.3e-06  Score=91.37  Aligned_cols=126  Identities=13%  Similarity=0.235  Sum_probs=68.1

Q ss_pred             CCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeC
Q psy1672          75 LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM  154 (600)
Q Consensus        75 ~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~L  154 (600)
                      ..+..+.+... ...+...+|....+|+.+.+..+ ++.+....|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+
T Consensus       194 ~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l  270 (379)
T 4h09_A          194 KTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF  270 (379)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence            34444443322 23334444555556666555332 45555555555566666666544 55555555666666666555


Q ss_pred             CCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccC
Q psy1672         155 SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHD  204 (600)
Q Consensus       155 s~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~  204 (600)
                      .. .+..+...+|.++.+|+.+.+.++.++.+....|..+.+|+.+.+.+
T Consensus       271 ~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          271 YA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             CC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             cc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            43 35555555566666666666665556666555666666666665543

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.36  E-value=9.2e-07  Score=75.33  Aligned_cols=95  Identities=17%  Similarity=0.269  Sum_probs=62.1

Q ss_pred             cccccccccccceeeeEee-cCCCC----eeEEEEcCeeccCCc-------ccCccceEEEeeCCcee--eeeeEEEecC
Q psy1672         261 SRYVEAVSSENATVVCRVD-SIPPA----AISWYWNGRLLLNNT-------AFSSYQRIFVIEQGEYE--RKSSLVLTNA  326 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~-g~P~p----~i~W~~~g~~l~~~~-------~~~~~~~~~~~~~g~~~--~~s~L~I~~v  326 (600)
                      +..+.+..|+.++|.|.+. +.+.+    .+.|++++.......       .+....+..+..+....  ....|.|.++
T Consensus         7 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v   86 (118)
T 3udw_C            7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSC
T ss_pred             CCeEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeec
Confidence            3447788999999999995 44444    399999743211000       00012233332221000  1458999999


Q ss_pred             CCCCCeEEEEEEec-CCCceeEEEEEEEEE
Q psy1672         327 QESDSGRFYCVAEN-RAGIADANFTLQVTY  355 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N-~~G~~~~~v~L~V~~  355 (600)
                      +.+|+|.|+|.+.+ ..|.....+.|.|..
T Consensus        87 ~~~D~G~Y~C~v~~~~~~~~~~~~~L~V~~  116 (118)
T 3udw_C           87 RVEDEGNYTCLFVTFPQGSRSVDIWLRVLA  116 (118)
T ss_dssp             CGGGCEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ChHHCeEEEEEEEECCCCCccceEEEEEEe
Confidence            99999999999999 778778888888754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.36  E-value=9e-07  Score=93.17  Aligned_cols=126  Identities=21%  Similarity=0.363  Sum_probs=94.4

Q ss_pred             CccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCC
Q psy1672          76 NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMS  155 (600)
Q Consensus        76 ~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls  155 (600)
                      .+..+.+. +.+..+...+|.++.+|+.+.+..+ +..+....|.++..|+.+.+. +.++.+...+|.++.+|+.+.|.
T Consensus       243 ~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp  319 (394)
T 4gt6_A          243 EDPAFKIP-NGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIP  319 (394)
T ss_dssp             CCSEEECC-TTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccceEEcC-CcceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeC
Confidence            34444443 3456677778888888888888544 556777788888888888885 45777877888888888888886


Q ss_pred             CCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCc
Q psy1672         156 ESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP  206 (600)
Q Consensus       156 ~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~  206 (600)
                      .+ ++.|...+|.++.+|+.+.|..+ ++.+....|..+.+|+.+++.++.
T Consensus       320 ~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          320 EG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             Cc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            53 77788888888888888888654 778888888888888888887764

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.36  E-value=1.2e-06  Score=91.25  Aligned_cols=94  Identities=23%  Similarity=0.417  Sum_probs=71.5

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+........+..|+.+.|.|.+.|.|.+.+.|+++++.+....    ..++.+..++   ..+.|.|.+++..|.|.|
T Consensus       101 P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~----~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y  173 (389)
T 2jll_A          101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKN----TTNLKTYSTG---RKMILEIAPTSDNDFGRY  173 (389)
T ss_dssp             EEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTT----CTTEEEEECS---SCEEEEECCCSTTSSEEE
T ss_pred             CEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCccc----CceEEEeccC---CEEEEEECCCChhhCEEE
Confidence            444333334467789999999999999999999999998876533    1233444333   235799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      +|.|.|..|.....+.+.+..
T Consensus       174 ~C~a~N~~G~~~~~~~l~v~~  194 (389)
T 2jll_A          174 NCTATNHIGTRFQEYILALAD  194 (389)
T ss_dssp             EEEEEETTEEEEEEEEEEECC
T ss_pred             EEEEEcCCCcEEEEEEEEecC
Confidence            999999999988877776643

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=98.35  E-value=9.2e-07  Score=83.28  Aligned_cols=93  Identities=13%  Similarity=0.299  Sum_probs=65.9

Q ss_pred             cccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCc------ccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNT------AFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~------~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      +...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+....      ......+....       .+.|.|.+++..|
T Consensus         4 v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-------~~~L~i~~v~~~D   76 (212)
T 1f97_A            4 VYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS-------SSGITFSSVTRKD   76 (212)
T ss_dssp             EECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE-------TTEEEESCCCGGG
T ss_pred             EEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee-------ceeEEEcccCccc
Confidence            3445667788999999999999999999999999765421100      00001122221       2479999999999


Q ss_pred             CeEEEEEEecCCC--ceeEEEEEEEEEc
Q psy1672         331 SGRFYCVAENRAG--IADANFTLQVTYR  356 (600)
Q Consensus       331 ~G~Y~C~a~N~~G--~~~~~v~L~V~~~  356 (600)
                      .|.|+|.|.|..|  ..+..+.|.|...
T Consensus        77 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~~  104 (212)
T 1f97_A           77 NGEYTCMVSEEGGQNYGEVSIHLTVLVP  104 (212)
T ss_dssp             CEEEEEEEEETTSSSEEEEEEEEEEEBC
T ss_pred             CeEEEEEEEccCCCcccEEEEEEEEEcC
Confidence            9999999999987  4456667776543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=98.35  E-value=1.4e-06  Score=87.34  Aligned_cols=87  Identities=28%  Similarity=0.350  Sum_probs=69.1

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEec-CCCCCCeEEEEEEec
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTN-AQESDSGRFYCVAEN  340 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~-v~~~d~G~Y~C~a~N  340 (600)
                      ....+..|+.+.|.|.+.|.|.+.+.|++++..+....      +..+...+   ....|.|.+ ++..|.|.|+|.|.|
T Consensus       112 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~------~~~~~~~~---~~~~l~i~~~~~~~d~G~Y~C~a~N  182 (305)
T 2nzi_A          112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNG------HYQVIVTR---SFTSLVFPNGVERKDAGFYVVCAKN  182 (305)
T ss_dssp             CCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSS------SCEEEECS---SEEEEEETTCCCSTTCEEEEEEEEE
T ss_pred             ccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCC------cEEEEEcC---CceEEEEecCCccCccEEEEEEEEe
Confidence            34567789999999999999999999999988765432      22222222   135789999 999999999999999


Q ss_pred             CCCceeEEEEEEEEEcc
Q psy1672         341 RAGIADANFTLQVTYRG  357 (600)
Q Consensus       341 ~~G~~~~~v~L~V~~~~  357 (600)
                      ..|.....+.|.|...+
T Consensus       183 ~~G~~~~~~~l~v~~~P  199 (305)
T 2nzi_A          183 RFGIDQKTVELDVADVP  199 (305)
T ss_dssp             TTEEEEEEEEEEEEBCC
T ss_pred             CCCceeeEEEEEEecCC
Confidence            99999999888887544

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=98.34  E-value=2.1e-07  Score=74.65  Aligned_cols=60  Identities=27%  Similarity=0.489  Sum_probs=48.5

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecC-CCCCCeEEEEEEe
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA-QESDSGRFYCVAE  339 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v-~~~d~G~Y~C~a~  339 (600)
                      +....+..|+.++|.|.+.|.|.  |+|+++|+.+...            .+      +.|.|.++ ..+|+|.|+|.|.
T Consensus         6 p~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~------------~~------~~L~I~~v~~~~DsG~Y~C~A~   65 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQK------------HD------KHLVLQDFSEVEDSGYYVCYTP   65 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCCCSS--CEEEETTEECTTC------------CS------SCCBCCSCCTTTTCSCEEEECS
T ss_pred             CceeEEEcCCeEEEEEECCCCCc--EEEEECCEECcCC------------CC------CEEEECccCccCcCEEEEEEEc
Confidence            45566678999999999999883  9999999877532            11      36899996 7899999999997


Q ss_pred             c
Q psy1672         340 N  340 (600)
Q Consensus       340 N  340 (600)
                      +
T Consensus        66 t   66 (82)
T 3r08_E           66 A   66 (82)
T ss_dssp             S
T ss_pred             c
Confidence            6

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.34  E-value=5.6e-07  Score=84.46  Aligned_cols=88  Identities=14%  Similarity=0.164  Sum_probs=62.5

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+.. .+..|+.++|.|.+.+ +.+.+.|++++..+....       .....   ....+.|.|.+++.+|+|.|
T Consensus         6 P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-------~~~~~---~~~~~~L~i~~v~~~D~G~Y   73 (196)
T 3p2t_A            6 PTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDR-------QNPLE---PKNKARFSIPSMTEDYAGRY   73 (196)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEE-------ECCCS---SSSEEEEEESSCCGGGCEEE
T ss_pred             CEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccc-------ccccc---CCceEEEEeccCCcccCceE
Confidence            444444444 6788999999999998 778999999887654211       00000   01235799999999999999


Q ss_pred             EEEEecCCCc--eeEEEEEEEE
Q psy1672         335 YCVAENRAGI--ADANFTLQVT  354 (600)
Q Consensus       335 ~C~a~N~~G~--~~~~v~L~V~  354 (600)
                      +|.|.|..|.  .+..+.|.|.
T Consensus        74 ~C~a~n~~g~~~~s~~~~l~V~   95 (196)
T 3p2t_A           74 RCYYRSPVGWSQPSDPLELVMT   95 (196)
T ss_dssp             EEEEEETTEEBCCCCCEEEEEE
T ss_pred             EEEEeCCCcccCCCccEEEEec
Confidence            9999999883  3455666664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.33  E-value=2.4e-06  Score=89.94  Aligned_cols=135  Identities=21%  Similarity=0.322  Sum_probs=96.7

Q ss_pred             CCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcc
Q psy1672          62 QILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKG  141 (600)
Q Consensus        62 ~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~  141 (600)
                      +.|....|.  ++.+|+.+.+..+ +..+...+|.....|+.+.+..+.   ++...|..+.+|+.+.+..+ ++.+...
T Consensus       242 ~~i~~~~f~--~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~  314 (394)
T 4fs7_A          242 TELGKSVFY--GCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEE  314 (394)
T ss_dssp             CEECSSTTT--TCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTT
T ss_pred             eeccccccc--ccccceeEEcCCC-cceeeccccccccccceeccCcee---eccccccccccccccccccc-cceechh
Confidence            344444444  5556666665544 334555556666666665554432   45556777888888888655 7788888


Q ss_pred             cccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCC
Q psy1672         142 AFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDN  205 (600)
Q Consensus       142 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N  205 (600)
                      +|.++.+|+.++|.. .++.|...+|.++.+|+.++|..+ ++.+....|..+.+|+.+.+..+
T Consensus       315 aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          315 AFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            888889999998864 488888888988999999998876 88888888888888988887654

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.33  E-value=7.8e-07  Score=81.90  Aligned_cols=79  Identities=19%  Similarity=0.391  Sum_probs=61.4

Q ss_pred             cccccccccccccccccceeeeEeecCCCCe-eEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |.+...+....+.+|+.++|.|.+.+.|.+. +.|+++++.+...                   .+.|.|.+++..|.|.
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~-------------------~~~L~i~~~~~~d~G~   68 (175)
T 1fnl_A            8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-------------------ASSYFIDAATVNDSGE   68 (175)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS-------------------CSEEEESSCCGGGCEE
T ss_pred             CEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC-------------------ceEEEEeCCCcccCEE
Confidence            4555556666788999999999999988776 8899998766421                   1379999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |+|.+.|..+..  .+.+.|.
T Consensus        69 Y~C~~~n~~~s~--~~~l~V~   87 (175)
T 1fnl_A           69 YRCQTNLSTLSD--PVQLEVH   87 (175)
T ss_dssp             EEEECSSSCCCC--CEEEEEE
T ss_pred             EEEEeeCCcccc--cEEEEEe
Confidence            999999966544  4555554

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=98.33  E-value=1e-06  Score=82.99  Aligned_cols=98  Identities=23%  Similarity=0.378  Sum_probs=67.2

Q ss_pred             cccccccccccccceeeeEeecCC----CCeeEEEEcC----------------eeccCCcccCccceEEEeeCCceeee
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIP----PAAISWYWNG----------------RLLLNNTAFSSYQRIFVIEQGEYERK  318 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P----~p~i~W~~~g----------------~~l~~~~~~~~~~~~~~~~~g~~~~~  318 (600)
                      ..+..+.+.+|+.+.|.|.+.+.+    .+.+.|++.+                +.+... ......++.+..++.....
T Consensus         5 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~   83 (214)
T 3jz7_A            5 TPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNY-YPDLKGRVHFTSNDVKSGD   83 (214)
T ss_dssp             -CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCC-CGGGTTTEEESCSCGGGTB
T ss_pred             cCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEcccc-CCccccceEEeccCccCCc
Confidence            344667889999999999999877    4699999833                211110 0001223333321111224


Q ss_pred             eeEEEecCCCCCCeEEEEEEecCCCceeEEEEEEEEEcc
Q psy1672         319 SSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       319 s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      ..|.|.+++..|+|.|+|.|.|..|.....+.|.|...+
T Consensus        84 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p  122 (214)
T 3jz7_A           84 ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKP  122 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             ccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCC
Confidence            579999999999999999999999988888888886543

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.33  E-value=5.7e-07  Score=86.38  Aligned_cols=86  Identities=13%  Similarity=0.163  Sum_probs=55.8

Q ss_pred             cccccccccccceeeeEeec-CCCCeeEEEEcC-eeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         261 SRYVEAVSSENATVVCRVDS-IPPAAISWYWNG-RLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g-~P~p~i~W~~~g-~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      .....+..|..+.+.|.+.| .|.|+|.|++++ ..+....     .......++.+.   .+.+.+++.+|.|.|+|+|
T Consensus       125 ~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~-----~~~~~~~~g~~~---v~s~l~v~~~d~G~YtC~a  196 (226)
T 4f80_A          125 HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVE-----APVVADGVGLYA---VAASVIMRGSSGEGVSCTI  196 (226)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEE-----CCCEECTTSCEE---EEEEEEECC----CEEEEE
T ss_pred             cceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCc-----eEEEECCCCcEE---EEEEEEechhcCcEEEEEE
Confidence            34456778999999999997 599999999954 4333211     111112223222   2334456788999999999


Q ss_pred             ecCCCceeEEEEEEEE
Q psy1672         339 ENRAGIADANFTLQVT  354 (600)
Q Consensus       339 ~N~~G~~~~~v~L~V~  354 (600)
                      +|.+|..++.+.|.|.
T Consensus       197 ~N~~g~~~~~~~v~v~  212 (226)
T 4f80_A          197 RSSLLGLEKTASISIA  212 (226)
T ss_dssp             EETTTTEEEEEEECCC
T ss_pred             EeCCCCeEEEEEEEEC
Confidence            9999999988888773

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.33  E-value=1.6e-06  Score=73.17  Aligned_cols=82  Identities=18%  Similarity=0.354  Sum_probs=56.3

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEEcC--ee---cc-CCcc--cCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG--RL---LL-NNTA--FSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g--~~---l~-~~~~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ...+..+.+.+|+.++|.|.+.+.|.+.+.|+++.  ..   +. ....  .....++.+...+   ....|.|.+++.+
T Consensus         5 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~---~~~~L~I~~v~~~   81 (108)
T 1jhl_L            5 TQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSG---TDFTLTISSLEPE   81 (108)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESS---SEEEEEECSCCTT
T ss_pred             eccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecC---CEEEEEECCCCHH
Confidence            34456678899999999999999888999999943  21   11 0000  0011233332221   2458999999999


Q ss_pred             CCeEEEEEEecCC
Q psy1672         330 DSGRFYCVAENRA  342 (600)
Q Consensus       330 d~G~Y~C~a~N~~  342 (600)
                      |+|.|.|.|.|..
T Consensus        82 DsG~Y~C~~~n~~   94 (108)
T 1jhl_L           82 DFAMYICQQHNEY   94 (108)
T ss_dssp             CCSEEEEEECSSS
T ss_pred             HCEEEEEEEccCC
Confidence            9999999999974

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.33  E-value=1.3e-06  Score=86.92  Aligned_cols=97  Identities=19%  Similarity=0.291  Sum_probs=68.0

Q ss_pred             ccccccccccccccccccceeeeEeecCCC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      .|.+...+....+..|+.+.|.|.+.+.|+ +.+.|++++..+....      . .....+.....+.|.|.+++.+|.|
T Consensus       186 ~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~------~-~~~~~~~~~~~~~L~i~~v~~~d~G  258 (292)
T 4dkd_C          186 PPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQ------Q-SDFHNNRYQKVLTLNLDQVDFQHAG  258 (292)
T ss_dssp             SCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCB------E-EEEETTEEEEEEEEEESSCCTTSCE
T ss_pred             CCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCc------c-ceeccceeeeEEEEEECccChhcCe
Confidence            444444555566678999999999998665 4577777776553222      1 1122222334568999999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEEEEcc
Q psy1672         333 RFYCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      .|+|.|.|..|..+..+.|.|....
T Consensus       259 ~Y~C~a~N~~g~~~~~~~l~V~~~~  283 (292)
T 4dkd_C          259 NYSCVASNVQGKHSTSMFFRVVESA  283 (292)
T ss_dssp             EEEEEEECSSCEEEEEEEECC----
T ss_pred             EEEEEEecCCCCceeEEEEEEeeCC
Confidence            9999999999999999998886543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.33  E-value=5.5e-07  Score=82.93  Aligned_cols=77  Identities=17%  Similarity=0.216  Sum_probs=59.3

Q ss_pred             cccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         263 YVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ...+..|+.+.|.|.+. +.|.+.+.|+++|+.+....                 ..+.|.|.+++.+|.|.|+|.|.|.
T Consensus        94 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-----------------~~~~L~i~~v~~~d~G~Y~C~a~n~  156 (176)
T 1f2q_A           94 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-----------------ENHNISITNATVEDSGTYYCTGKVW  156 (176)
T ss_dssp             CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-----------------CSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             cceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec-----------------CCCeEEECCCCcccCEEEEEEEEeC
Confidence            35677899999999995 66778999999998764211                 1237999999999999999999997


Q ss_pred             CCc-eeEEEEEEEEEc
Q psy1672         342 AGI-ADANFTLQVTYR  356 (600)
Q Consensus       342 ~G~-~~~~v~L~V~~~  356 (600)
                      .+. .+..+.|.|...
T Consensus       157 ~~~~~s~~~~l~V~~~  172 (176)
T 1f2q_A          157 QLDYESEPLNITVIKA  172 (176)
T ss_dssp             TEEEECCCEEEEEECS
T ss_pred             CcceEecCEEEEEecC
Confidence            443 455577777544

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=98.32  E-value=1.5e-06  Score=72.08  Aligned_cols=102  Identities=15%  Similarity=0.239  Sum_probs=65.5

Q ss_pred             Ccccccccc-cccccccccccceeeeEeec-CCCCeeEEEEc-CeeccCCcccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         252 ACKPEIRMD-SRYVEAVSSENATVVCRVDS-IPPAAISWYWN-GRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       252 ~C~p~i~~~-~~~~~v~~G~~v~L~C~v~g-~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      .|..++.+- .....+..|+.+.|.|.+.+ .+.|+|+|.+. ++....... ....+..+.+.++ .....|.|.++..
T Consensus        11 ~c~~ql~ikR~S~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~-~~q~~~~w~e~~n-~s~fiL~f~~V~~   88 (122)
T 1xau_A           11 ECEVQLNIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEV-GPQLYTSWEENRS-VPVFVLHFKPIHL   88 (122)
T ss_dssp             -CCCEECCCTTEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCC-BTTEEEEEECSSS-SCEEEEEETTCCG
T ss_pred             ccceEEEEEeeccEEEecCCeEEEEeEecCCCCCCcEEEEecCCeecccccc-ceeeecceeccCC-ceeEEEEEeeEEE
Confidence            365554433 34456789999999999975 67999999994 322111100 1112333444432 1234789999999


Q ss_pred             CCCeEEEEEEecCCCce-eEEEEEEEEE
Q psy1672         329 SDSGRFYCVAENRAGIA-DANFTLQVTY  355 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G~~-~~~v~L~V~~  355 (600)
                      .|+|.|+|.|.|..|.. +..+.+.|..
T Consensus        89 sDsG~YrCsAn~~~g~ieSHs~ti~V~~  116 (122)
T 1xau_A           89 SDNGSYSCSTNFNSQVINSHSVTIHVRE  116 (122)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred             cCCccEEEEeeCCCCceeeeEEEEEEEe
Confidence            99999999999988865 3445566643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.32  E-value=1.1e-07  Score=105.49  Aligned_cols=153  Identities=15%  Similarity=0.085  Sum_probs=70.1

Q ss_pred             ceEEEeeCCCCCCC-ChhhhcccCCCCccEEEeec---------ccCcccCcccc-CCCCCccEEEccCCCCCCCCcccc
Q psy1672          51 TQVLDMSGNNLQIL-PKEAFRRAGLLNLQKLFLAR---------CHIGQIDSGAL-DGLTNLIEIDLSDNLLTSIPSLTF  119 (600)
Q Consensus        51 l~~L~Ls~n~L~~l-~~~~f~~~~l~~L~~L~L~~---------n~l~~i~~~~f-~~l~~L~~L~Ls~N~l~~l~~~~f  119 (600)
                      ++.|++++| +... ......  .+++|+.|+|.+         +.++......+ .++++|++|++..|.++......+
T Consensus       316 L~~L~l~~~-~~~~~l~~l~~--~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l  392 (594)
T 2p1m_B          316 LQRLWVLDY-IEDAGLEVLAS--TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI  392 (594)
T ss_dssp             CCEEEEEGG-GHHHHHHHHHH--HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH
T ss_pred             cCEEeCcCc-cCHHHHHHHHH--hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH
Confidence            788888877 3311 111111  366777777733         23322211112 135566666666666553222222


Q ss_pred             C-CCCCCCEEEcc--C----CCCCccCc-----ccccCCCCcceeeCCCCcCcccChhhhcC-CCCCCEEEcCCCcCCCC
Q psy1672         120 Q-SVRFLRDLNLA--R----NPISKIEK-----GAFQFVPGLVKLDMSESRLEHISPEAFTG-AKSLESIKLNGNRLSHF  186 (600)
Q Consensus       120 ~-~l~~L~~L~Ls--~----N~i~~l~~-----~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~-l~~L~~L~Ls~N~l~~l  186 (600)
                      . .+++|+.|+|+  +    |.++..+.     ..+..+++|+.|+|++ .+.......+.. +++|+.|+|++|.++..
T Consensus       393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~  471 (594)
T 2p1m_B          393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL  471 (594)
T ss_dssp             HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHH
T ss_pred             HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHH
Confidence            1 34556666665  2    33332211     1133455566666644 333322222322 55556666655555432


Q ss_pred             Ccccc-cccccccEEEccCCcC
Q psy1672         187 PVRSV-EPLLKLMMIELHDNPW  207 (600)
Q Consensus       187 ~~~~~-~~l~~L~~L~l~~N~~  207 (600)
                      ....+ ..+++|+.|++.+|++
T Consensus       472 ~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          472 GMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCSC
T ss_pred             HHHHHHhcCCCcCEEECcCCCC
Confidence            22222 3345555555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.32  E-value=4.6e-06  Score=87.73  Aligned_cols=90  Identities=23%  Similarity=0.418  Sum_probs=76.8

Q ss_pred             CCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCccccc
Q psy1672         113 SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVE  192 (600)
Q Consensus       113 ~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  192 (600)
                      .+....|.++..|+.+.+..+ +..+...+|.++.+|+.+.+. +.++.|...+|.++.+|+.++|..+ ++.+....|.
T Consensus       255 ~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~  331 (394)
T 4gt6_A          255 RIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA  331 (394)
T ss_dssp             EECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             EcccceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence            345567888899999999765 556778899999999999996 6788999999999999999999865 8889889999


Q ss_pred             ccccccEEEccCC
Q psy1672         193 PLLKLMMIELHDN  205 (600)
Q Consensus       193 ~l~~L~~L~l~~N  205 (600)
                      .+.+|+.+.+..+
T Consensus       332 ~C~~L~~i~ip~s  344 (394)
T 4gt6_A          332 GCEQLERIAIPSS  344 (394)
T ss_dssp             TCTTCCEEEECTT
T ss_pred             CCCCCCEEEECcc
Confidence            9999999998654

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.32  E-value=2.1e-07  Score=87.61  Aligned_cols=82  Identities=22%  Similarity=0.393  Sum_probs=60.0

Q ss_pred             cccccccccceeeeEe-ecCCCCeeEEEEcCeeccCCcccCcc---ceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         263 YVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSY---QRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v-~g~P~p~i~W~~~g~~l~~~~~~~~~---~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      ...+..|+.+.|.|.+ .+.|.+.+.|+++++.+.........   .+..+.     ...+.|.|.+++.+|.|.|+|.|
T Consensus       116 ~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a  190 (209)
T 1nbq_A          116 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN-----PTTGELVFDPLSASDTGEYSCEA  190 (209)
T ss_dssp             BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCC-----TTTCCEEESSCCGGGCCCEEEEE
T ss_pred             ccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEc-----CCcceEEEEeccccCCeEEEEEE
Confidence            3457789999999997 79999999999998877653321000   001010     02357999999999999999999


Q ss_pred             ecCCCceeEEE
Q psy1672         339 ENRAGIADANF  349 (600)
Q Consensus       339 ~N~~G~~~~~v  349 (600)
                      .|..|....+.
T Consensus       191 ~n~~g~~~~s~  201 (209)
T 1nbq_A          191 RNGYGTPMTSN  201 (209)
T ss_dssp             ECSSSCCEECC
T ss_pred             eCCcCcccccc
Confidence            99999984443

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.32  E-value=8.6e-07  Score=96.60  Aligned_cols=90  Identities=17%  Similarity=0.242  Sum_probs=70.5

Q ss_pred             cccccccccceeeeEeecCCCCe-eEEEEcCeeccCCcccCccceEEEe-eCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVI-EQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~-~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      ...+..|+.+.|.|.+.|.|.|. +.|+++++.+.....     +.... .++.....+.|.|.+++..|.|.|+|.|.|
T Consensus       322 ~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~-----~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  396 (524)
T 2ec8_A          322 TVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWE-----DYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSN  396 (524)
T ss_dssp             EEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBC-----CEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             eEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCcc-----ceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEe
Confidence            46678999999999999999999 999999987764331     11111 112223456899999999999999999999


Q ss_pred             CCCceeEEEEEEEEEcc
Q psy1672         341 RAGIADANFTLQVTYRG  357 (600)
Q Consensus       341 ~~G~~~~~v~L~V~~~~  357 (600)
                      ..|..+..+.|.|...+
T Consensus       397 ~~g~~~~~~~l~V~~~P  413 (524)
T 2ec8_A          397 SDVNAAIAFNVYVNTKP  413 (524)
T ss_dssp             SSCEEEEEEEEEECEEE
T ss_pred             cCceEEEEEEEEEecCC
Confidence            99999998888886543

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=98.31  E-value=6.1e-07  Score=82.63  Aligned_cols=75  Identities=13%  Similarity=0.191  Sum_probs=57.9

Q ss_pred             cccccccccceeeeEeecCCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ...+..|+.++|.|.+.+.+++ .+.|+++|+.+...                 ...+.|.|.+++.+|.|.|+|.|.|.
T Consensus        97 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~-----------------~~~~~L~i~~v~~~d~G~Y~C~a~n~  159 (175)
T 1fnl_A           97 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----------------HHNSDFHIPKATLKDSGSYFCRGLVG  159 (175)
T ss_dssp             CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----------------EECCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC-----------------CCCCEEEEcccChhhCeEEEEEEEcC
Confidence            3557789999999999987664 99999998765311                 11247999999999999999999997


Q ss_pred             CCc-eeEEEEEEEE
Q psy1672         342 AGI-ADANFTLQVT  354 (600)
Q Consensus       342 ~G~-~~~~v~L~V~  354 (600)
                      .|. .+..+.|.|.
T Consensus       160 ~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          160 SKNVSSETVNITIT  173 (175)
T ss_dssp             TEEEECCCEEEEEE
T ss_pred             CCCccCccEEEEEe
Confidence            654 4555666663

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=98.31  E-value=7.5e-07  Score=90.49  Aligned_cols=80  Identities=19%  Similarity=0.298  Sum_probs=64.7

Q ss_pred             ccccccccccceeeeEeecCCCCe-eEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEe-cCCCCCCeEEEEEEe
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT-NAQESDSGRFYCVAE  339 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~-~v~~~d~G~Y~C~a~  339 (600)
                      ....+..|+.+.|.|.+.|.|.|. +.|++++..+....         ...+      +.|.|. +++..|.|.|+|.|.
T Consensus       240 ~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~---------~~~~------~~L~i~~~v~~~d~G~Y~C~a~  304 (331)
T 3u83_A          240 DGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV---------EAQN------RTLFFKGPINYSLAGTYICEAT  304 (331)
T ss_dssp             CSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---------EEET------TEEEECSCCCGGGCEEEEEEEE
T ss_pred             CCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc---------eecC------cEEEEeCCCccccCeEEEEEEE
Confidence            334577899999999999999998 99999887664321         1122      379999 899999999999999


Q ss_pred             cCCCceeEEEEEEEEEc
Q psy1672         340 NRAGIADANFTLQVTYR  356 (600)
Q Consensus       340 N~~G~~~~~v~L~V~~~  356 (600)
                      |..|..+..+.|.|...
T Consensus       305 N~~G~~~~~~~l~V~~~  321 (331)
T 3u83_A          305 NPIGTRSGQVEVNITEA  321 (331)
T ss_dssp             ETTEEEEEEEEECCBC-
T ss_pred             eccccceEEEEEEEecc
Confidence            99999998888888544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.29  E-value=3.2e-07  Score=101.65  Aligned_cols=126  Identities=18%  Similarity=0.212  Sum_probs=69.3

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecc-cCccc-CccccCCCCCccEEEccCCCCCCCCcccc----CCCCC
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARC-HIGQI-DSGALDGLTNLIEIDLSDNLLTSIPSLTF----QSVRF  124 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n-~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f----~~l~~  124 (600)
                      ++.|+|++|.++......+. ..+++|+.|+|++| .++.. .+..+..+++|++|+|++|.++......+    ..+++
T Consensus       107 L~~L~L~~~~~~~~~~~~l~-~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~  185 (594)
T 2p1m_B          107 LEEIRLKRMVVTDDCLELIA-KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS  185 (594)
T ss_dssp             CCEEEEESCBCCHHHHHHHH-HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred             CCeEEeeCcEEcHHHHHHHH-HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence            77788877776533222221 03677888888777 44432 12223467778888888777655433222    24567


Q ss_pred             CCEEEccCCCCCccCccc----ccCCCCcceeeCCCC-cCcccChhhhcCCCCCCEEEcC
Q psy1672         125 LRDLNLARNPISKIEKGA----FQFVPGLVKLDMSES-RLEHISPEAFTGAKSLESIKLN  179 (600)
Q Consensus       125 L~~L~Ls~N~i~~l~~~~----~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls  179 (600)
                      |+.|+|++|. ..+....    +..+++|+.|++++| .+..+ +..+..+++|+.|++.
T Consensus       186 L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l-~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          186 LVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTG  243 (594)
T ss_dssp             CCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH-HHHHHHCTTCSEEECS
T ss_pred             CcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH-HHHHhcCCcceEcccc
Confidence            8888887775 2222222    233577777777766 33332 3333444555555443

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=98.29  E-value=1.2e-06  Score=83.27  Aligned_cols=79  Identities=19%  Similarity=0.408  Sum_probs=61.3

Q ss_pred             cccccccccccccccccceeeeEeecCCCCe-eEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |.+...+....+.+|+.++|.|.+.+.|.+. +.|+++++.+....                   +.|.|.+++.+|+|.
T Consensus         8 p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~-------------------~~L~i~~v~~~D~G~   68 (204)
T 3sgj_C            8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA-------------------SSYFIDAATVDDSGE   68 (204)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS-------------------SEEEESSCCGGGCEE
T ss_pred             CeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc-------------------cEEEEecccccCCEE
Confidence            3444455557788999999999999988775 99999988765321                   379999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |+|.|.|...  +..+.|.|.
T Consensus        69 Y~C~a~n~~~--s~~~~l~V~   87 (204)
T 3sgj_C           69 YRCQTQLSTL--SDPVQLEVH   87 (204)
T ss_dssp             EEEEETTSBC--CCCEEEEEE
T ss_pred             EEEEeCCCcc--cccEEEEEe
Confidence            9999998543  444556554

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=98.29  E-value=1.9e-06  Score=85.60  Aligned_cols=92  Identities=27%  Similarity=0.451  Sum_probs=67.6

Q ss_pred             ccccccccccccccccceeeeEeecCC-CCeeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P-~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .+...+....+..|+.++|.|.+.+.| .+.+.|++ +|..+....     .++.+...+  ...+.|.|.+++..|.|.
T Consensus         4 ~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~-----~~~~~~~~~--~~~~~L~i~~~~~~D~G~   76 (291)
T 1qz1_A            4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ-----QRISVVWND--DDSSTLTIYNANIDDAGI   76 (291)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSC-----SSEEEEEEE--TTEEEEEECSCCGGGCEE
T ss_pred             ceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCC-----ceEEEEEcC--CCeEEEEEecCCCCCCEE
Confidence            445556677889999999999999887 68999999 777665322     233332211  123589999999999999


Q ss_pred             EEEEEecCCCc-eeEEEEEEEE
Q psy1672         334 FYCVAENRAGI-ADANFTLQVT  354 (600)
Q Consensus       334 Y~C~a~N~~G~-~~~~v~L~V~  354 (600)
                      |+|.|.|..|. .+..+.|.|.
T Consensus        77 Y~C~~~n~~g~~~~~~~~l~v~   98 (291)
T 1qz1_A           77 YKCVVTAEDGTQSEATVNVKIF   98 (291)
T ss_dssp             EEEEEECTTSCEEEEEEEEEEE
T ss_pred             EEEEEEcCCCCeeEEEEEEEee
Confidence            99999999864 4566666664

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.28  E-value=6.5e-07  Score=85.79  Aligned_cols=84  Identities=19%  Similarity=0.370  Sum_probs=57.8

Q ss_pred             ccccccccccccccccc-eeeeEe-ecCCCCeeEEEEcCeeccCCcccCccceEEEe------eCCceeeeeeEEEecCC
Q psy1672         256 EIRMDSRYVEAVSSENA-TVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI------EQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v-~L~C~v-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~------~~g~~~~~s~L~I~~v~  327 (600)
                      .+...+....+..|+.+ .|.|.+ .+.|.|.+.|++++..+......  ..+..+.      .++.+...+.|.|....
T Consensus       120 ~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~  197 (231)
T 2pet_A          120 EVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEM--NPEGYMTSRTVREASGLLSLTSTLYLRLRK  197 (231)
T ss_dssp             EEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSC--CSSEEEEEEEEECTTSCEEEEEEEEEECCG
T ss_pred             EEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcccccc--ccceeecceeEecCCCeEEEEEEEEEecch
Confidence            33334455667788887 999999 79999999999999887654311  1122221      22434445678887555


Q ss_pred             CCCCeEEEEEEecC
Q psy1672         328 ESDSGRFYCVAENR  341 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~  341 (600)
                      ..|.|.|+|.|.|.
T Consensus       198 ~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          198 DDRDASFHCAAHYS  211 (231)
T ss_dssp             GGGGCEEEEEEEEE
T ss_pred             hhCCceEEEEEEcC
Confidence            66699999999994

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.28  E-value=6.5e-07  Score=83.62  Aligned_cols=62  Identities=16%  Similarity=0.363  Sum_probs=51.5

Q ss_pred             cccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      .+..|+.+.|.|.+   |.|.|.|+++|+.+.....                ..+.|.|.+++..|.|.|+|.|.|..|.
T Consensus       118 ~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~----------------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  178 (186)
T 1jbj_A          118 GSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA----------------TKNTWNLGNNAKDPRGTYQCQGAKETSN  178 (186)
T ss_dssp             CCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC----------------CSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred             ecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC----------------CcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence            34589999999998   8899999999988753220                1237899999999999999999999887


Q ss_pred             e
Q psy1672         345 A  345 (600)
Q Consensus       345 ~  345 (600)
                      .
T Consensus       179 ~  179 (186)
T 1jbj_A          179 P  179 (186)
T ss_dssp             E
T ss_pred             c
Confidence            5

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=98.28  E-value=2.1e-06  Score=94.76  Aligned_cols=95  Identities=20%  Similarity=0.237  Sum_probs=67.3

Q ss_pred             cccccccccccceeeeEee----cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         261 SRYVEAVSSENATVVCRVD----SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~----g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      +....+..|+.+.|.|.+.    +.|.+.|.|+++|..+..........+......  ....+.|.|.+++.+|.|.|+|
T Consensus       449 ~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C  526 (585)
T 2ocw_A          449 PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDE--NSRLVSLTLNLVTRADEGWYWC  526 (585)
T ss_pred             CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecC--cccEEEEEECCCCcccCeEEEE
Confidence            4556788899999999997    778889999999987654321111111111111  1123589999999999999999


Q ss_pred             EEecCCCceeEE-EEEEEEEcc
Q psy1672         337 VAENRAGIADAN-FTLQVTYRG  357 (600)
Q Consensus       337 ~a~N~~G~~~~~-v~L~V~~~~  357 (600)
                      .|.|..|..... +.|.|..++
T Consensus       527 ~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          527 GVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             EeEeCCCccEEEEEEEEEEeee
Confidence            999999976544 788886654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=98.28  E-value=1.2e-06  Score=95.97  Aligned_cols=81  Identities=16%  Similarity=0.204  Sum_probs=65.2

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      .+.+..|+.+.|.|.+.|.|.|.|.|+++|+.+......       . .     ....|.|.+++..|.|.|+|.|.|..
T Consensus       335 ~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~-------~-~-----~~~~L~I~~v~~~D~G~YtC~A~N~~  401 (527)
T 3qs9_E          335 DYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG-------L-D-----NGYSISKFCNHKHQPGEYIFHAENDD  401 (527)
T ss_dssp             EECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCB-------C-S-----SSSEEEEECCCTTCCSCEEEEEEETT
T ss_pred             cEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCccc-------c-c-----CCcEEEEecCCcccCEEEEEEEEeCC
Confidence            356778999999999999999999999999887543311       0 0     12368999999999999999999999


Q ss_pred             CceeEEEEEEEEEc
Q psy1672         343 GIADANFTLQVTYR  356 (600)
Q Consensus       343 G~~~~~v~L~V~~~  356 (600)
                      |.....+.|.|...
T Consensus       402 g~~~~~~~L~V~~~  415 (527)
T 3qs9_E          402 AQFTKMFTLNIRRK  415 (527)
T ss_dssp             EEEEEEEEEC--CC
T ss_pred             CcEEEEEEEEEecC
Confidence            99998888888644

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.28  E-value=1.5e-06  Score=88.77  Aligned_cols=81  Identities=20%  Similarity=0.258  Sum_probs=61.0

Q ss_pred             cccccccccceeeeEeecCC-CCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         263 YVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ...+..|+.+.|.|.+.|.| .+.+.|++++..+....     .+.... +      +.|.|.+++.+|.|.|+|.|.|.
T Consensus       137 ~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~-----~~~~~~-~------~~L~I~~v~~~D~G~Y~C~a~n~  204 (329)
T 3oq3_B          137 ELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDG-----TKYSQS-G------QNLIIHNPELEDSGRYDCYVHYD  204 (329)
T ss_dssp             ETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSS-----SSEEEE-T------TEEEECSCCGGGCEEEEEEEEEC
T ss_pred             ceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCC-----ceEecC-C------CEEEEeecChhhCEEEEEEEEec
Confidence            34466799999999999999 89999999998774221     122222 2      37999999999999999999998


Q ss_pred             --CCceeEE----EEEEEEE
Q psy1672         342 --AGIADAN----FTLQVTY  355 (600)
Q Consensus       342 --~G~~~~~----v~L~V~~  355 (600)
                        .|.....    +.|.|..
T Consensus       205 ~~~g~~~~~~s~~~~l~V~~  224 (329)
T 3oq3_B          205 DVRIKNDIVVSRCKILTVIP  224 (329)
T ss_dssp             CTTSSSCEEEEEEEEEEEEC
T ss_pred             ccCCCceeEEEeeEEEEEEC
Confidence              7665444    5565543

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=98.28  E-value=7.5e-07  Score=87.83  Aligned_cols=72  Identities=17%  Similarity=0.241  Sum_probs=58.1

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+.              ..+      .+  ..++.+|.|.|+|.|.|
T Consensus       192 p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~--------------~~g------~~--~~v~~~d~G~Y~C~a~N  249 (265)
T 2oz4_A          192 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL--------------PIG------ES--VTVTRDLEGTYLCRARS  249 (265)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEEC--------------CTT------SC--EECCGGGCEEEEEEEEE
T ss_pred             CCccEEcCCCeEEEEeECccCCCCeEEEEECCcccC--------------CCC------cE--EEeehhhCeEEEEEEEC
Confidence            345677889999999999999999999999886211              112      12  24778999999999999


Q ss_pred             CCCceeEEEEEEEE
Q psy1672         341 RAGIADANFTLQVT  354 (600)
Q Consensus       341 ~~G~~~~~v~L~V~  354 (600)
                      ..|..+..+.|.|.
T Consensus       250 ~~G~~~~~~~l~V~  263 (265)
T 2oz4_A          250 TQGEVTREVTVNVL  263 (265)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEe
Confidence            99999999998885

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.27  E-value=7.8e-07  Score=81.10  Aligned_cols=74  Identities=18%  Similarity=0.304  Sum_probs=57.0

Q ss_pred             cccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         263 YVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ...+..|+.+.|.|.+. +.|.+.+.|+++++.+....                 ..+.|.|.+++..|.|.|+|.|.|.
T Consensus        94 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-----------------~~~~L~i~~v~~~d~G~Y~C~a~n~  156 (170)
T 3ry4_A           94 HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH-----------------LDPTFSIPQANHSHSGDYHCTGNIG  156 (170)
T ss_dssp             CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES-----------------SCCEEEESSCCGGGCEEEEEEEEET
T ss_pred             CceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC-----------------CCCeEEEEeccccCCEEEEEEEEeC
Confidence            45567899999999995 56678999999887653211                 1237999999999999999999999


Q ss_pred             CCc-eeEEEEEEE
Q psy1672         342 AGI-ADANFTLQV  353 (600)
Q Consensus       342 ~G~-~~~~v~L~V  353 (600)
                      .|. .+..+.|.|
T Consensus       157 ~g~~~s~~~~l~V  169 (170)
T 3ry4_A          157 YTLFSSKPVTITV  169 (170)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             cCccccccEEEEE
Confidence            986 344455554

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=98.27  E-value=1.4e-06  Score=90.99  Aligned_cols=83  Identities=24%  Similarity=0.325  Sum_probs=64.6

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      +..+.+..|+.+.|.|.+.|.|.|.+.|++ ++..+....        ....     ..+.|.|.+++.+|.|.|+|.|.
T Consensus       212 ~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~--------~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~  278 (384)
T 3kld_A          212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA--------RRHK-----SNGILEIPNFQQEDAGSYECVAE  278 (384)
T ss_dssp             CSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTC--------EECT-----TSCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccc--------eecC-----CCcEEEECCCChhhCEEEEEEEE
Confidence            345567889999999999999999999999 444443211        1111     12479999999999999999999


Q ss_pred             cCCCceeEEEEEEEEEc
Q psy1672         340 NRAGIADANFTLQVTYR  356 (600)
Q Consensus       340 N~~G~~~~~v~L~V~~~  356 (600)
                      |..|.......|.|...
T Consensus       279 N~~G~~~~~~~l~v~~~  295 (384)
T 3kld_A          279 NSRGKNVAKGQLTFYAQ  295 (384)
T ss_dssp             ETTEEEEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEEEEecC
Confidence            99999988888888654

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=98.27  E-value=9.3e-07  Score=81.39  Aligned_cols=79  Identities=25%  Similarity=0.466  Sum_probs=59.7

Q ss_pred             cccccccccccccccccceeeeEeecCCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |.+...+..+.+.+|+.++|.|.+.+.+.+ .+.|++++..+...                   .+.|.|.+++..|.|.
T Consensus         5 P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-------------------~~~L~i~~v~~~d~G~   65 (176)
T 1f2q_A            5 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------------------NSSLNIVNAKFEDSGE   65 (176)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC-------------------SSEEEECSCCGGGCEE
T ss_pred             CEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC-------------------ceEEEEeccceecCEE
Confidence            455555666788999999999999988875 69999998766431                   1379999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |+|.+.|..+...  +.+.|.
T Consensus        66 Y~C~~~~~~~s~~--~~l~V~   84 (176)
T 1f2q_A           66 YKCQHQQVNESEP--VYLEVF   84 (176)
T ss_dssp             EEEECTTSSCCCC--EEEEEE
T ss_pred             EEEEcCCcccccc--EEEEEe
Confidence            9999999776544  444443

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=98.27  E-value=1.9e-06  Score=82.21  Aligned_cols=81  Identities=19%  Similarity=0.203  Sum_probs=63.0

Q ss_pred             ccccccccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      ..+.+..|++++|.|.+ +.|.|  .|+|.+....+         .+.... .    ....|.|.+++.+|.|.|.|.|.
T Consensus        15 ~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---------~~~~~~-~----~~~~L~I~~v~~~d~G~Y~C~a~   79 (210)
T 1gsm_A           15 PVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---------GAVQSD-T----GRSVLTVRNASLSAAGTRVCVGS   79 (210)
T ss_dssp             SEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---------CCEEEE-S----SEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---------CcEEec-C----CccEEEECccCcccCceEEEEEE
Confidence            34688899999999999 88888  99999843222         122221 1    23579999999999999999999


Q ss_pred             cCCCceeEEEEEEEEEcc
Q psy1672         340 NRAGIADANFTLQVTYRG  357 (600)
Q Consensus       340 N~~G~~~~~v~L~V~~~~  357 (600)
                      |..|...+.+.|.|...|
T Consensus        80 n~~~~~~~~~~ltV~~~P   97 (210)
T 1gsm_A           80 CGGRTFQHTVQLLVYAFP   97 (210)
T ss_dssp             ETTEEEEEEEEEEEEBCC
T ss_pred             eCCCceEEEEEEEEEecC
Confidence            999988888888886543

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.26  E-value=1.8e-06  Score=82.22  Aligned_cols=85  Identities=15%  Similarity=0.242  Sum_probs=57.7

Q ss_pred             cccccccceeeeEeecCCCCeeEEEEc-CeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPAAISWYWN-GRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p~i~W~~~-g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      .+..|+.++|.|.+.|.|.|.|.|+++ +..+.....    .......++.+...+.+.   +...|.|.|+|.|.|..|
T Consensus       127 ~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~l~---v~~~d~g~Y~C~a~n~~g  199 (222)
T 3sbw_C          127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTT----TTNSKREEKLFNVTSTLR---INTTTNEIFYCTFRRLDP  199 (222)
T ss_dssp             EETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEE----EEECC----CEEEEEEEE---EECCTTCEEEEEEEETTT
T ss_pred             eecCCCcEEEEEEecCCCCCeEEEEECCCceecCccc----eEEEcCCCCCEEEEEEEE---EeccCCcEEEEEEEeCcc
Confidence            456799999999999999999999997 655543210    001111122222223333   346889999999999999


Q ss_pred             ceeEEEEEEEEEc
Q psy1672         344 IADANFTLQVTYR  356 (600)
Q Consensus       344 ~~~~~v~L~V~~~  356 (600)
                      .....+.|.|...
T Consensus       200 ~~~~~~~l~v~~~  212 (222)
T 3sbw_C          200 EENHTAELVIPEL  212 (222)
T ss_dssp             TEEEEEEEECCCC
T ss_pred             ceeeEEEEEecCC
Confidence            9999988887543

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=98.26  E-value=1.1e-07  Score=108.49  Aligned_cols=94  Identities=19%  Similarity=0.357  Sum_probs=0.0

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+........+..|+.+.|.|.+.|.|.|.|.|+++|..+....      ++.+..+     .+.|.|.+++.+|.|.
T Consensus       666 ~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~------~~~~~~~-----~~~L~I~~v~~~D~G~  734 (772)
T 3v2a_R          666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS------GIVLKDG-----NRNLTIRRVRKEDEGL  734 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCC------CeEEcCC-----CcEEEECcCCHHHCEE
Confidence            3444444555678889999999999999999999999998776432      1222111     2479999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEccC
Q psy1672         334 FYCVAENRAGIADANFTLQVTYRGV  358 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~~~  358 (600)
                      |+|.|.|..|.++..+.|.|...+.
T Consensus       735 Y~C~a~N~~G~~~~~~~l~V~~~p~  759 (772)
T 3v2a_R          735 YTCQACSVLGCAKVEAFFIIEGAQE  759 (772)
T ss_dssp             -------------------------
T ss_pred             EEEEEEeCCcceeEEEEEEEECCCC
Confidence            9999999999999999999876543

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.26  E-value=1.5e-06  Score=73.10  Aligned_cols=92  Identities=15%  Similarity=0.217  Sum_probs=59.5

Q ss_pred             cccccccccceeeeEeecCCC---CeeEEEEcCeec-------c--CCcc--cCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPP---AAISWYWNGRLL-------L--NNTA--FSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~---p~i~W~~~g~~l-------~--~~~~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      .+.+..|+.++|.|.+.+.+.   ..+.|++.....       .  ....  .....++.+..+ .......|.|.+++.
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~-~~~~~~sL~I~~v~~   81 (109)
T 2oyp_A            3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGD-LNKGDVSLIIKNVTL   81 (109)
T ss_dssp             EEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSC-GGGTBCCEEECSCCG
T ss_pred             CEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccC-ccCCcEeEEEccCCC
Confidence            356788999999999886543   348999954210       0  0000  001122222211 111235799999999


Q ss_pred             CCCeEEEEEEecCCCceeEEEEEEEEE
Q psy1672         329 SDSGRFYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      +|+|.|+|.+.+..+.....+.|.|.+
T Consensus        82 ~D~G~Y~C~v~~~~~~~~~~~~l~V~V  108 (109)
T 2oyp_A           82 DDHGTYCCRIQFPGLMNDKKLELKLDI  108 (109)
T ss_dssp             GGCEEEEEEECCSSTTCCEEEEEEEEE
T ss_pred             hhCeEEEEEEEcCCcccceEEEEEEEe
Confidence            999999999999887777777777754

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.25  E-value=1.5e-06  Score=76.73  Aligned_cols=92  Identities=20%  Similarity=0.338  Sum_probs=61.6

Q ss_pred             ccccccccccccccccceeeeEeecCCCCeeEEEEc--CeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .+...+..+.+.+|+.++|.|.+.+.  +.+.|+++  ++.+....  ....++.+..++   ....|.|.+++.+|+|.
T Consensus        19 ~v~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~--~~~~r~~~~~~~---~~~~L~I~~~~~~DsG~   91 (133)
T 3khq_A           19 QIWQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELV--SEEGRIVQTQNG---SVYTLTIQNIQYEDNGI   91 (133)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECC--CTTTTEEEEEET---TEEEEEECSCCGGGCEE
T ss_pred             ceEEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEE--EeCCCEEEEcCC---CEEEEEECCCChHHCEE
Confidence            44555677889999999999999976  88999996  32211000  012344443333   23579999999999999


Q ss_pred             EEEEEecCCCc----eeEEEEEEEE
Q psy1672         334 FYCVAENRAGI----ADANFTLQVT  354 (600)
Q Consensus       334 Y~C~a~N~~G~----~~~~v~L~V~  354 (600)
                      |+|.|.|..|.    ......|.|.
T Consensus        92 Y~C~a~n~~g~~~~~~g~gt~L~V~  116 (133)
T 3khq_A           92 YFCKQKCDSANHNVTDSCGTELLVL  116 (133)
T ss_dssp             EEEEESSCC-------CCCEEEEEC
T ss_pred             EEEEEEeCCCCcceeECCCEEEEEE
Confidence            99999998763    2233556663

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.25  E-value=2.4e-06  Score=74.21  Aligned_cols=96  Identities=20%  Similarity=0.203  Sum_probs=60.9

Q ss_pred             ccccccccccccceeeeEeecCCC---CeeEEEEcCeeccC-------Cc---c-cC-ccceEEEeeCCceeeeeeEEEe
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPP---AAISWYWNGRLLLN-------NT---A-FS-SYQRIFVIEQGEYERKSSLVLT  324 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~---p~i~W~~~g~~l~~-------~~---~-~~-~~~~~~~~~~g~~~~~s~L~I~  324 (600)
                      .+..+.+..|++++|.|.+.+.+.   ..|.|++....-..       ..   . .+ ...|+.+..........+|.|.
T Consensus         6 ~p~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   85 (123)
T 4gjt_B            6 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   85 (123)
T ss_dssp             CCSEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEE
T ss_pred             cCCEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEEC
Confidence            345678899999999999976554   35789984321000       00   0 00 0123333222212234579999


Q ss_pred             cCCCCCCeEEEEEEec-CCCceeEEEEEEEEE
Q psy1672         325 NAQESDSGRFYCVAEN-RAGIADANFTLQVTY  355 (600)
Q Consensus       325 ~v~~~d~G~Y~C~a~N-~~G~~~~~v~L~V~~  355 (600)
                      +++.+|+|.|+|.+.+ ..|...+.+.|.|.+
T Consensus        86 ~v~~~DsG~Y~C~v~t~~~g~~~~~~~L~VlE  117 (123)
T 4gjt_B           86 NAVQADEGEYECRVSTFPAGSFQARLRLRVLE  117 (123)
T ss_dssp             SCCSSSCSEEEEEEEESSSCEEEEEEEEEC--
T ss_pred             CCChHHCEEEEEEEEECCCCeEEeEEEEEEEE
Confidence            9999999999998876 567778888888754

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.25  E-value=8.6e-07  Score=84.05  Aligned_cols=92  Identities=17%  Similarity=0.365  Sum_probs=64.4

Q ss_pred             ccccccccccccccccccceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      .|.+...+....+..|+.++|.|.+.+. |+ +.|.|+++|+.+.......   .... .++.+...+.|.|..++..|.
T Consensus       114 ~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~---~~~~-~~~~~~~~s~L~i~~~~~~d~  189 (213)
T 3mj8_L          114 APSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTT---QPSK-SDSKYMATSYLTMTADAWKSR  189 (213)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEC---CCEE-ETTEEEEEEEEEEESHHHHSC
T ss_pred             CCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccC---CcCc-cCCcEEEEEEEEEeHHHcCCC
Confidence            3444433444445589999999999985 33 4999999998876432110   1111 445455567899999999999


Q ss_pred             eEEEEEEecCCCceeEEE
Q psy1672         332 GRFYCVAENRAGIADANF  349 (600)
Q Consensus       332 G~Y~C~a~N~~G~~~~~v  349 (600)
                      |.|+|.|+|..+...+.+
T Consensus       190 G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          190 NTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             SCEEEEEEETTEEEEEEE
T ss_pred             CEEEEEEEECCccEEeee
Confidence            999999999987766554

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=98.25  E-value=2.3e-06  Score=85.02  Aligned_cols=92  Identities=26%  Similarity=0.474  Sum_probs=69.8

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      .|.+...+..+.+..|+.++|.|.+.+.|. .+.|++ +|..+...      .+..+..++   ..+.|.|.+++..|.|
T Consensus         4 ~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~------~~~~~~~~~---~~~~L~i~~~~~~D~G   73 (291)
T 2wim_A            4 LLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIIST------QRVVVQKEG---VRSRLTIYNANIEDAG   73 (291)
T ss_dssp             CCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCB------TTEEEEEET---TEEEEEECSCCGGGCE
T ss_pred             CceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCC------CcEEEecCC---CEEEEEEccCCcccCE
Confidence            456666677788999999999999998875 899999 66655432      233343333   2358999999999999


Q ss_pred             EEEEEEecCCCce-eEEEEEEEEE
Q psy1672         333 RFYCVAENRAGIA-DANFTLQVTY  355 (600)
Q Consensus       333 ~Y~C~a~N~~G~~-~~~v~L~V~~  355 (600)
                      .|+|.|.|..|.. ...+.+.|..
T Consensus        74 ~Y~C~~~n~~g~~~~~~~~l~v~~   97 (291)
T 2wim_A           74 IYRCQATDAKGQTQEATVVLEIYQ   97 (291)
T ss_dssp             EEEEEEECSSSCEEEEEEEEEEEC
T ss_pred             EEEEEEecccCceEEEEEEEEecC
Confidence            9999999999876 4566666644

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.24  E-value=2e-06  Score=89.72  Aligned_cols=83  Identities=23%  Similarity=0.440  Sum_probs=66.9

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...+..|+.+.|.|.+.|.|.+.+.|+++++.+....      . .....     .+.|.|.+++..|.|.|+|.|.|..
T Consensus       231 ~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~------~-~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~n~~  298 (404)
T 3p3y_A          231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDK------A-KFENF-----NKALRITNVSEEDSGEYFCLASNKM  298 (404)
T ss_dssp             EEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTT------E-EEEGG-----GTEEEESSCCGGGCEEEEEEEECSS
T ss_pred             CceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCc------c-ccccc-----CceEEEccCCHhHCEEEEEEEEeCC
Confidence            3457789999999999999999999999988765432      1 11111     2479999999999999999999999


Q ss_pred             CceeEEEEEEEEEcc
Q psy1672         343 GIADANFTLQVTYRG  357 (600)
Q Consensus       343 G~~~~~v~L~V~~~~  357 (600)
                      |..+..+.|.|...+
T Consensus       299 g~~~~~~~l~V~~~p  313 (404)
T 3p3y_A          299 GSIRHTISVRVKAAP  313 (404)
T ss_dssp             CEEEEEEEEEEEEEE
T ss_pred             CcEEEEEEEEEeCCC
Confidence            999888888886543

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=98.24  E-value=2.5e-06  Score=73.40  Aligned_cols=91  Identities=18%  Similarity=0.288  Sum_probs=62.3

Q ss_pred             cccccccccccceeeeEeec--CCCCeeEEEEcCeeccCCc-c----c--CccceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         261 SRYVEAVSSENATVVCRVDS--IPPAAISWYWNGRLLLNNT-A----F--SSYQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g--~P~p~i~W~~~g~~l~~~~-~----~--~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      +..+.+..|+.++|.|.+.+  .+...+.|++++..+.... .    .  ....|+.+..      ...|+|.+++.+|+
T Consensus        10 ~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~------~~sL~I~~v~~~D~   83 (117)
T 3q0h_A           10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP------GLGLTLQSLTVNDT   83 (117)
T ss_dssp             SCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECS------TTCEEECSCCGGGC
T ss_pred             cCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCC------ceEEEEeeCChhhC
Confidence            45678889999999999986  3345799999754321100 0    0  0012333211      34799999999999


Q ss_pred             eEEEEEEe-cCCCceeEEEEEEEEEcc
Q psy1672         332 GRFYCVAE-NRAGIADANFTLQVTYRG  357 (600)
Q Consensus       332 G~Y~C~a~-N~~G~~~~~v~L~V~~~~  357 (600)
                      |.|+|.+. +..|..++.+.|.|...+
T Consensus        84 G~Y~C~v~~~~~g~~~~~~~L~V~~pp  110 (117)
T 3q0h_A           84 GEYFCIYHTYPDGTYTGRIFLEVLESS  110 (117)
T ss_dssp             EEEEEEEEEETTCCEEEEEEEEEECC-
T ss_pred             EEEEEEEEECCCCCeEEEEEEEEEccC
Confidence            99999975 466888888899886544

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.24  E-value=2.4e-06  Score=89.18  Aligned_cols=85  Identities=22%  Similarity=0.452  Sum_probs=68.4

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +....+..|+.++|.|.+.+.|.+.+.|++++..+....     .+.....+      +.|.|.+++..|.|.|+|.|.|
T Consensus       228 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~-----~~~~~~~~------~~L~i~~~~~~d~G~Y~C~a~n  296 (403)
T 3laf_A          228 PSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRS-----KKYSLLGG------SNLLISNVTDDDSGTYTCVVTY  296 (403)
T ss_dssp             CCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSS-----SSEEEETT------TEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCC-----ceEEECCc------cEEEEeCCCHHHCEEEEEEEEc
Confidence            445667789999999999999999999999988765322     12222222      3799999999999999999999


Q ss_pred             CCCceeEEEEEEEEEc
Q psy1672         341 RAGIADANFTLQVTYR  356 (600)
Q Consensus       341 ~~G~~~~~v~L~V~~~  356 (600)
                      ..|..+..+.|.|...
T Consensus       297 ~~g~~~~~~~l~V~~~  312 (403)
T 3laf_A          297 KNENISASAELTVLVP  312 (403)
T ss_dssp             TTEEEEEEEEEEEEEE
T ss_pred             CCCceEEEEEEEEECC
Confidence            9999988888888654

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=98.23  E-value=1.5e-06  Score=81.56  Aligned_cols=94  Identities=12%  Similarity=0.279  Sum_probs=65.1

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcc------cCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTA------FSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~------~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.....      .....++...       .+.|.|.+++.
T Consensus         5 ~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-------~~~L~i~~~~~   77 (209)
T 1nbq_A            5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL-------PTGITFKSVTR   77 (209)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE-------TTEEECSCCCT
T ss_pred             EEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee-------ccEEEEeeCCH
Confidence            3445556778889999999999999999999999997654211000      0001111111       25799999999


Q ss_pred             CCCeEEEEEEecCCCc--eeEEEEEEEEE
Q psy1672         329 SDSGRFYCVAENRAGI--ADANFTLQVTY  355 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G~--~~~~v~L~V~~  355 (600)
                      .|.|.|+|.|.|..|.  .+..+.|.|..
T Consensus        78 ~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~  106 (209)
T 1nbq_A           78 EDTGTYTCMVSEEGGNSYGEVKVKLIVLV  106 (209)
T ss_dssp             TSCSEEEEEEEETTSSCEECCEEECCEEB
T ss_pred             HHCcEEEEEEecCCCCccceEEEEEEEec
Confidence            9999999999998763  34455666644

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.23  E-value=4.2e-07  Score=92.94  Aligned_cols=99  Identities=19%  Similarity=0.245  Sum_probs=71.5

Q ss_pred             cccccccccccccccccceeeeEe---ecCC-CCeeEEEEcCeeccCCcc---cCccceEEEeeCCceeeeeeEEEecCC
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRV---DSIP-PAAISWYWNGRLLLNNTA---FSSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v---~g~P-~p~i~W~~~g~~l~~~~~---~~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      |.+...+....+..|+.+.|.|.+   .|.| .+.+.|++++..+.....   .....+..+..++.....+.|.|.+++
T Consensus       227 P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~  306 (339)
T 3o4o_C          227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVT  306 (339)
T ss_dssp             CEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSC
T ss_pred             CEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEec
Confidence            444444566678899999999999   8999 889999999887653211   112223333334433344579999999


Q ss_pred             CCCC-eEEEEEEecCCCceeEEEEEEE
Q psy1672         328 ESDS-GRFYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       328 ~~d~-G~Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      ..|. |.|+|.|.|..|.+++.+.+.+
T Consensus       307 ~~d~~G~Y~C~a~N~~G~~~~~~~~~~  333 (339)
T 3o4o_C          307 REDLHMDFKCVVHNTLSFQTLRTTVKE  333 (339)
T ss_dssp             CCSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred             hhhcCccEEEEEEeccCceEEEEEhhH
Confidence            9997 9999999999999887655544

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.23  E-value=8.4e-07  Score=90.35  Aligned_cols=85  Identities=28%  Similarity=0.487  Sum_probs=66.3

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      ..+..|+.+.|.|.+.|.|.+.+.|+++++.+.......   .... ..    ....|.|.+++..|.|.|+|.|.|..|
T Consensus       133 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~---~~~~-~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g  204 (334)
T 1ry7_B          133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG---GIKL-RH----QQWSLVMESVVPSDRGNYTCVVENKFG  204 (334)
T ss_dssp             EEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTT---CCCC-CT----TTTEEEECSCCGGGCCCEEEEEEETTE
T ss_pred             EEecCCCcEEEEEEccCCCCCeEEEEECCEECccccccc---ceec-cc----ceEEEEECCCCcccCEEEEEEEEeCCC
Confidence            456789999999999999999999999988775443211   0000 01    124799999999999999999999999


Q ss_pred             ceeEEEEEEEEEc
Q psy1672         344 IADANFTLQVTYR  356 (600)
Q Consensus       344 ~~~~~v~L~V~~~  356 (600)
                      .....+.|.|...
T Consensus       205 ~~~~~~~l~V~~~  217 (334)
T 1ry7_B          205 SIRQTYTLDVLER  217 (334)
T ss_dssp             EEEEEEEEEEECC
T ss_pred             CEEEEEEEEEecC
Confidence            9888888888653

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.23  E-value=1.4e-06  Score=81.07  Aligned_cols=78  Identities=13%  Similarity=0.117  Sum_probs=58.0

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+. ..+.+|+.++|.|.+.+ +.+.+.|++++...             ..      ..+.|.|.+++..|.|.|
T Consensus         9 P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~-------------~~------~~~~L~i~~v~~~D~G~Y   67 (184)
T 2gi7_A            9 PSLQALPS-SLVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR-------------YQ------DQAVLFIPAMKRSLAGRY   67 (184)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECST-TCSEEEEEETTTCC-------------EE------SSSEEEESSCCGGGCEEE
T ss_pred             CeEEeCCC-ccccCCCcEEEEEeCCC-CCCEEEEEECCccc-------------cC------cccEEEECcCChhhCceE
Confidence            34443344 36789999999999988 78899999987540             01      123799999999999999


Q ss_pred             EEEEecCCCce--eEEEEEEE
Q psy1672         335 YCVAENRAGIA--DANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~--~~~v~L~V  353 (600)
                      +|.|.|..|..  +..+.|.|
T Consensus        68 ~C~a~n~~g~~~~s~~~~l~V   88 (184)
T 2gi7_A           68 RCSYQNGSLWSLPSDQLELVA   88 (184)
T ss_dssp             EEEEEETTEEBCCCCCEEEEE
T ss_pred             EEEEEcCCCccCCCCCEEEEe
Confidence            99999988632  34455655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.23  E-value=3.7e-06  Score=88.42  Aligned_cols=140  Identities=21%  Similarity=0.311  Sum_probs=115.8

Q ss_pred             CceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEE
Q psy1672          50 LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLN  129 (600)
Q Consensus        50 ~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  129 (600)
                      .++.+.+..+ +..+....|.  .+..|+.+.+..+.   +...+|.++.+|+.+.+..+ ++.|...+|.++.+|+.++
T Consensus       254 ~l~~~~~~~~-~~~i~~~~F~--~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~  326 (394)
T 4fs7_A          254 DLESISIQNN-KLRIGGSLFY--NCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSID  326 (394)
T ss_dssp             SCCEEEECCT-TCEECSCTTT--TCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEEC
T ss_pred             cceeEEcCCC-cceeeccccc--cccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEE
Confidence            3677777655 5567777787  78999999887653   56677999999999999765 8999999999999999999


Q ss_pred             ccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEE
Q psy1672         130 LARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMI  200 (600)
Q Consensus       130 Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  200 (600)
                      |..+ ++.+...+|.++.+|+.+.|..+ ++.|...+|.++.+|+.++|..+ +..+. ..|..+.+|+.+
T Consensus       327 lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~-~~F~~c~~L~~I  393 (394)
T 4fs7_A          327 LPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYR-YDFEDTTKFKWI  393 (394)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGG-GGBCTTCEEEEE
T ss_pred             eCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhh-heecCCCCCcEE
Confidence            9754 88999999999999999999877 99999999999999999999755 55553 467777777654

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.23  E-value=2.8e-06  Score=80.85  Aligned_cols=95  Identities=16%  Similarity=0.238  Sum_probs=63.1

Q ss_pred             ccccccccccccceeeeEeecCCC-----CeeEEEEcCeeccC---------CcccCccceEEEeeCCceeeeeeEEEec
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPP-----AAISWYWNGRLLLN---------NTAFSSYQRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~-----p~i~W~~~g~~l~~---------~~~~~~~~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      .+..+.+..|+.+.|.|.+.+.|.     ..+.|++++..+..         ........+..+..++.......|.|.+
T Consensus         7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   86 (222)
T 3sbw_C            7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD   86 (222)
T ss_dssp             SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred             CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence            345567889999999999987663     48999997533211         0000011233333221111235899999


Q ss_pred             CCCCCCeEEEEEEecCCCceeEEEEEEEEE
Q psy1672         326 AQESDSGRFYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       326 v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      ++.+|.|.|+|.|.| .|.....+.|.|..
T Consensus        87 v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~  115 (222)
T 3sbw_C           87 VKLQDAGVYRCMISY-GGADYKRITVKVNA  115 (222)
T ss_dssp             CCGGGCEEEEEEEES-SSEEEEEEEEEEEB
T ss_pred             cccccCeEEEEEEEe-CCCceeEEEEEEEC
Confidence            999999999999999 67777777887753

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=98.22  E-value=2.8e-06  Score=86.62  Aligned_cols=90  Identities=16%  Similarity=0.166  Sum_probs=66.5

Q ss_pred             ccccccccccccceeeeEeecCC---CC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe-EE
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIP---PA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG-RF  334 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P---~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G-~Y  334 (600)
                      .+....+..|+.+.|.|.+.|.|   .+ .+.|++++..+.....   .........+. ...+.|.|.+++.+|.| .|
T Consensus       234 ~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~---~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~~Y  309 (329)
T 3oq3_B          234 LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDF---GVYSILTSSGG-ITEATLYFENVTEEYIGNTY  309 (329)
T ss_dssp             CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCS---SEEEEEEEETT-EEEEEEEESSCCGGGTTCEE
T ss_pred             cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCC---ceeeeecccCc-eeEeEEEEEeccHHHCCCcE
Confidence            44557788999999999999988   77 8899999876422110   00011011222 24578999999999999 99


Q ss_pred             EEEEecCCCceeEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V  353 (600)
                      +|.|.|..|.....+.|.|
T Consensus       310 ~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          310 TCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEecCCceEEEEEEEe
Confidence            9999999999988887765

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=98.22  E-value=3.9e-06  Score=91.37  Aligned_cols=99  Identities=23%  Similarity=0.364  Sum_probs=73.3

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCe-eEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      .|.+...+....+..|+.+.|.|.+.+.|.+. +.|++++..+...    ...+..+..+......+.|.|.+++..|.|
T Consensus       211 ~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G  286 (524)
T 2ec8_A          211 VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQ----EKYNSWHHGDFNYERQATLTISSARVNDSG  286 (524)
T ss_dssp             CCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCC----EEEEEEECSSSCEEEEEEEEESSCCTTTCE
T ss_pred             CCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccc----cccccccccCCccceEEEEEECCCCHHHCE
Confidence            45555555566788999999999999999886 9999988763111    111222222222344578999999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEEEEc
Q psy1672         333 RFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      .|+|.|.|..|.....+.|.|...
T Consensus       287 ~Y~C~a~n~~g~~~~~~~l~V~~~  310 (524)
T 2ec8_A          287 VFMCYANNTFGSANVTTTLEVVDK  310 (524)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEESS
T ss_pred             EEEEEEEecCCceEEEEEEEEecc
Confidence            999999999999988888888643

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=98.22  E-value=4e-06  Score=89.15  Aligned_cols=88  Identities=10%  Similarity=0.152  Sum_probs=63.3

Q ss_pred             ccccccccccceeeeEeec-CCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         262 RYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      ....+.+|+.+.|.|.+.| .|.+.|.|++++..+.....+   .......+......+.|.|.+++..|.|.|+|.|.|
T Consensus       235 ~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~---~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N  311 (423)
T 3qs7_E          235 PQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYF---EMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK  311 (423)
T ss_dssp             TEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEE---EEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETT
T ss_pred             CceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEcccccee---ecccccCCceeEEEEEEEEeecCHHHCEEEEEEEec
Confidence            3556788999999999998 677999999998876433211   001111111123345799999999999999999999


Q ss_pred             CCCceeEEEEEEEEE
Q psy1672         341 RAGIADANFTLQVTY  355 (600)
Q Consensus       341 ~~G~~~~~v~L~V~~  355 (600)
                      .   .+..+.|.|..
T Consensus       312 ~---~~~~~~L~V~~  323 (423)
T 3qs7_E          312 H---PSQSALVTIVE  323 (423)
T ss_dssp             E---EEEEEEEEEES
T ss_pred             C---CCceEEEEEEe
Confidence            8   66777777754

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.21  E-value=2.6e-06  Score=72.60  Aligned_cols=84  Identities=20%  Similarity=0.387  Sum_probs=56.0

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEEcC--eecc----CCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG--RLLL----NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g--~~l~----~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      ..+..+.+.+|+.++|.|.+.+.+ +.+.|++..  ..+.    .........++.+..+........|.|.+++.+|+|
T Consensus         6 q~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~DsG   84 (113)
T 1h5b_A            6 QSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSG   84 (113)
T ss_dssp             EECSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCE
T ss_pred             ECCCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhCE
Confidence            345667889999999999998754 689999843  2110    000001123343333221223458999999999999


Q ss_pred             EEEEEEecCCC
Q psy1672         333 RFYCVAENRAG  343 (600)
Q Consensus       333 ~Y~C~a~N~~G  343 (600)
                      .|.|.+.|..|
T Consensus        85 ~Y~C~~~n~~~   95 (113)
T 1h5b_A           85 TYFCAAEASSG   95 (113)
T ss_dssp             EEEEEEECSSS
T ss_pred             EEEEEEecCCC
Confidence            99999999876

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=98.21  E-value=2.4e-06  Score=83.35  Aligned_cols=79  Identities=23%  Similarity=0.445  Sum_probs=63.2

Q ss_pred             cccccccccccccccccceeeeEeecCCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |.+...+....+.+|+.+.|.|.+.+.|.+ .+.|+++|..+...                   ...|.|.+++..|.|.
T Consensus         2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~-------------------~~~l~i~~~~~~d~G~   62 (262)
T 3rjd_A            2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-------------------TPSYRITSASVNDSGE   62 (262)
T ss_dssp             CEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC-------------------SSEEEESSCCGGGCEE
T ss_pred             CeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc-------------------CCeEEEecCCcccCeE
Confidence            455566677788999999999999999888 99999998876432                   1368999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |+|.|.|..+...  +.+.|.
T Consensus        63 Y~C~~~~~~~s~~--~~l~v~   81 (262)
T 3rjd_A           63 YRCQRGLSGRSDP--IQLEIH   81 (262)
T ss_dssp             EEEEESSSCCCCC--EEEEEE
T ss_pred             EEEEEecCCcccc--EEEEEe
Confidence            9999999877654  444443

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=98.21  E-value=1.2e-06  Score=73.98  Aligned_cols=74  Identities=14%  Similarity=0.336  Sum_probs=52.7

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+.. .+..|++|+|.|.+.+. ...+.|+++++.+...       +  ....   .....|.|.+++.+|+|.|
T Consensus         6 P~i~~~p~~-~v~~G~~VtL~C~~~~~-~~~~~w~k~g~~~~~~-------~--~~~~---~~~~~l~I~~v~~~dsG~Y   71 (105)
T 2vsd_A            6 PSLSLHPSQ-GVSLGDTVTLRCHLPRM-AAWVQLWLNGTLRFDK-------E--KDKE---QDAAEFSFAVTNLEDAGTY   71 (105)
T ss_dssp             CEEEEESCS-SCCTTCEEEEEEECCSS-CEEEEEEETTEEEEEE-------E--ECTT---CSEEEEEEECCSGGGCEEE
T ss_pred             CEEEeCCCC-CcCcCCCEEEEEEcCCC-CcEEEEEECCccceee-------e--ccCC---CCEEEEEECCCCHHHCeEE
Confidence            444444444 67899999999999865 4678999988654311       0  0011   1235799999999999999


Q ss_pred             EEEEecCC
Q psy1672         335 YCVAENRA  342 (600)
Q Consensus       335 ~C~a~N~~  342 (600)
                      +|.+.|..
T Consensus        72 ~C~~~n~~   79 (105)
T 2vsd_A           72 QCRYQVSE   79 (105)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEcCC
Confidence            99999964

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.21  E-value=7.8e-07  Score=84.55  Aligned_cols=74  Identities=18%  Similarity=0.313  Sum_probs=55.4

Q ss_pred             ccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecC-CCCCCeEEEEEEecCCCce-
Q psy1672         268 SSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA-QESDSGRFYCVAENRAGIA-  345 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v-~~~d~G~Y~C~a~N~~G~~-  345 (600)
                      +|+.++|.|.  +.|.|.|.|+++++.+.....   ...+ ...+      +.|.|.++ +..|+|.|+|.|.|..|.. 
T Consensus       127 ~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~---~~~~-~~~~------~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~  194 (204)
T 1sy6_A          127 SGTTVILTCP--QYPGSEILWQHNDKNIGGDED---DKNI-GSDE------DHLSLKEFSELEQSGYYVCYPRGSKPEDA  194 (204)
T ss_dssp             ETTEEEEECS--CCCSSCEEEEETTEEESCCTT---CTTE-EEET------TEEEETTCCHHHHCEEEEEEETTSCGGGS
T ss_pred             cCCcEEEEcC--CCCCCceEEEECCEECCCccC---CceE-ecCC------CEEEEeeCCccccCEEEEEEeccCCCCce
Confidence            8999999999  789999999999987754321   0111 1122      47999999 9999999999999999963 


Q ss_pred             eEEEEEEE
Q psy1672         346 DANFTLQV  353 (600)
Q Consensus       346 ~~~v~L~V  353 (600)
                      +..+.|.+
T Consensus       195 s~~l~l~~  202 (204)
T 1sy6_A          195 NFYLYLRA  202 (204)
T ss_dssp             SCEEEEEE
T ss_pred             eEEEEEEE
Confidence            45555543

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.21  E-value=1.6e-06  Score=82.10  Aligned_cols=82  Identities=18%  Similarity=0.335  Sum_probs=58.2

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      .+..|+.++|.|.+.|.+++  .|.|+++|+.+.....   ........++.+...+.|.|..+...|.|.|+|.|.|..
T Consensus       126 ~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~---~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~  202 (212)
T 1q0x_L          126 EELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGME---TTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG  202 (212)
T ss_dssp             HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE---ECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             HHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCee---cCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCC
Confidence            34468899999999985443  8999999988764321   011122233445556789999999999999999999987


Q ss_pred             CceeEEE
Q psy1672         343 GIADANF  349 (600)
Q Consensus       343 G~~~~~v  349 (600)
                      ....+++
T Consensus       203 ~~~~~~v  209 (212)
T 1q0x_L          203 HSSNKTL  209 (212)
T ss_dssp             EEEEEEE
T ss_pred             cceeeee
Confidence            6644443

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=98.21  E-value=2.6e-06  Score=80.32  Aligned_cols=76  Identities=16%  Similarity=0.212  Sum_probs=56.1

Q ss_pred             ccccceeeeEeecC-CCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCcee
Q psy1672         268 SSENATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD  346 (600)
Q Consensus       268 ~G~~v~L~C~v~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~  346 (600)
                      .++.+.|.|.+.+. |.+.+.|++++..+....      +..+...+.   ...|.|.+++.+|.|.|+|.|.|..|...
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~------~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~   86 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD------RVKTGVTGE---QIWLQINEPTPNDKGKYVMELFDGKTGHQ   86 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCS------SEEEEEETT---EEEEEEESCCGGGCEEEEEEEECSSCEEE
T ss_pred             cCceEEEEEEEeccCCCceEEEEECCEEccCCC------eEEEEEeCC---EEEEEECCCCcccCEEEEEEEecCCcceE
Confidence            45667788888764 588999999998876432      333333331   34699999999999999999999888776


Q ss_pred             EEEEEE
Q psy1672         347 ANFTLQ  352 (600)
Q Consensus       347 ~~v~L~  352 (600)
                      ..+.+.
T Consensus        87 ~~~~l~   92 (212)
T 2r15_A           87 KTVDLS   92 (212)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            655553

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.20  E-value=2.9e-06  Score=79.64  Aligned_cols=89  Identities=18%  Similarity=0.256  Sum_probs=64.2

Q ss_pred             cccccccccccceeeeEeec-CCCCeeEEEEcCeeccC---Ccc--------cCc-cceEEEeeCCceeeeeeEEEecCC
Q psy1672         261 SRYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLN---NTA--------FSS-YQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g-~P~p~i~W~~~g~~l~~---~~~--------~~~-~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      +..+.+..|+.++|.|.+.+ .+.+.|.|+++++.+..   ...        .+. ..|+.+..      .+.|.|.+++
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~------~~sL~I~~v~   78 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ------SYSLQLSNLK   78 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECT------TCCEEECSCC
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECC------CeEEEECCCC
Confidence            45677889999999999875 45579999998764421   100        000 02333332      2489999999


Q ss_pred             CCCCeEEEEEEecCCCceeEEEEEEEEE
Q psy1672         328 ESDSGRFYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      .+|.|.|+|.|.|..|.....+.|.|..
T Consensus        79 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~~  106 (193)
T 2if7_A           79 MEDTGSYRAQISTKTSAKLSSYTLRILR  106 (193)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             cccCceEEEEEEecCCCeEEEEEEEEEc
Confidence            9999999999999998877777887753

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.20  E-value=1.1e-06  Score=82.09  Aligned_cols=69  Identities=23%  Similarity=0.420  Sum_probs=54.6

Q ss_pred             cccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEec-CCCCCCeEEEEEEecCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTN-AQESDSGRFYCVAENRAG  343 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~-v~~~d~G~Y~C~a~N~~G  343 (600)
                      .+..|+.+.|.|.+.+ + +.|.|+++|+.+....            +      ..|.|.+ ++..|+|.|+|.|.|..|
T Consensus        10 v~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~~------------~------~~L~I~~~~~~~D~G~Y~C~a~n~~g   69 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-D-ENLKWEKNGQELPQKH------------D------KHLVLQDFSEVEDSGYYVCYTPASNK   69 (186)
T ss_dssp             EEEETTEEEEECSSCC-C-TTCEEEETTEEECSCC------------C------SEEEEESCCTTTSCEEEEEECSSCCC
T ss_pred             EEeCCcEEEEEEeCCC-C-CceEEEECCEECCCCC------------C------CEEEECCCCccccCEEEEEEEEeCCC
Confidence            3467999999999987 4 3599999998775421            1      2699999 999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy1672         344 IADANFTLQV  353 (600)
Q Consensus       344 ~~~~~v~L~V  353 (600)
                      .....+.+.|
T Consensus        70 ~~~~~~~~~v   79 (186)
T 1jbj_A           70 NTYLYLKARV   79 (186)
T ss_dssp             CCCEEECCCC
T ss_pred             cEEEEEEEEE
Confidence            8655554444

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.20  E-value=3.7e-06  Score=79.58  Aligned_cols=94  Identities=17%  Similarity=0.355  Sum_probs=63.7

Q ss_pred             cccccccccccccccceeeeEeecCCCCeeEEEEc--Ceecc---C-C--cccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLL---N-N--TAFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~---~-~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      +...+ .+.+.+|+.++|.|.+.+.|.+.+.|++.  +....   . .  .......++.+...+   ....|.|.+++.
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~L~I~~v~~   79 (213)
T 3mj8_L            4 LTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSG---NMATLTISKAQA   79 (213)
T ss_dssp             BBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET---TEEEEEESSCCG
T ss_pred             EEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecC---CEEEEEECCCCh
Confidence            34445 77889999999999999999999999982  22110   0 0  000011233322211   245799999999


Q ss_pred             CCCeEEEEEEecCCC---ceeEEEEEEEE
Q psy1672         329 SDSGRFYCVAENRAG---IADANFTLQVT  354 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G---~~~~~v~L~V~  354 (600)
                      +|+|.|+|.|.|..|   .....+.|.|.
T Consensus        80 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~  108 (213)
T 3mj8_L           80 GDEADYYCQSWDGTNSAWVFGSGTKVTVL  108 (213)
T ss_dssp             GGCEEEEEEEEETTTTEEEEBCCEEEEEE
T ss_pred             hhCEEEEEEeccCCcceeEEcCceEEEEe
Confidence            999999999999988   34455667765

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.19  E-value=2.1e-06  Score=89.46  Aligned_cols=91  Identities=22%  Similarity=0.334  Sum_probs=68.6

Q ss_pred             ccccccccccccccccccceeeeEeec-CCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      .|.+...+..+.+.+|+.++|.|.+.+ .|.+.+.|+++|..+.....     +.....     ..+.|.|.+++..|.|
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~-----~~~~~~-----~~~~L~i~~~~~~D~G   75 (395)
T 1bih_A            6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH-----NAALRK-----DEGSLVFLRPQASDEG   75 (395)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTT-----TEEECT-----TSCCEEESSCCGGGCE
T ss_pred             CCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccc-----eEEEec-----CCceEEEecCCCCCCc
Confidence            456666677788899999999999998 88999999999987754331     111111     1247999999999999


Q ss_pred             EEEEEEecCCCcee-EEEEEEEE
Q psy1672         333 RFYCVAENRAGIAD-ANFTLQVT  354 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~-~~v~L~V~  354 (600)
                      .|+|.|.|..|... ..+.+.+.
T Consensus        76 ~Y~C~a~n~~g~~~s~~~~l~v~   98 (395)
T 1bih_A           76 HYQCFAETPAGVASSRVISFRKT   98 (395)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEEEEeCCCeEEeEEEEEEEE
Confidence            99999999988764 33555554

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.18  E-value=2e-06  Score=80.67  Aligned_cols=72  Identities=17%  Similarity=0.079  Sum_probs=44.6

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      ..+.+|+.++|.|.+.+.| +.+.|++++..+.....     .......+  ...+.|.|.+++.+|.|.|+|.|.|..+
T Consensus       109 ~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~-----~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          109 PVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTL-----DSQLTPSG--QFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             --------CEEEEEESSCC-SEEEEEEC---CCEEEE-----ECEECTTS--CEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             ccccCCCcEEEEEEcCCCC-CEEEEEccCCccccccc-----ccccccCC--CceeEEEeeecCcccCeeEEEEEEccCC
Confidence            4678899999999999988 89999999876532110     00011111  1235899999999999999999999865

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=98.18  E-value=1.9e-06  Score=86.75  Aligned_cols=85  Identities=20%  Similarity=0.364  Sum_probs=63.1

Q ss_pred             cccccccccccccccccceeeeEeecC-CCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |.+. .+....+.+|+.++|.|.+.+. |.+.+.|+++++.+....      +..+. .+    ...|.|.+++..|.|.
T Consensus         8 P~~~-~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~------~~~~~-~~----~~~L~i~~~~~~d~G~   75 (317)
T 2y25_A            8 PHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE------KHDFK-DG----ICTLLITEFSKKDAGI   75 (317)
T ss_dssp             CEEE-EEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSC------C------C----CEEEEETTCCSTTCSC
T ss_pred             CcEe-eeeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCC------cEEEE-CC----eEEEEEccCCcccCeE
Confidence            4444 3335788899999999999987 778999999998876433      11111 11    2589999999999999


Q ss_pred             EEEEEecCCCceeEEEEE
Q psy1672         334 FYCVAENRAGIADANFTL  351 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L  351 (600)
                      |+|.|.|..|.....+.+
T Consensus        76 Y~C~~~n~~g~~~~~~~l   93 (317)
T 2y25_A           76 YEVILKDDRGKDKSRLKL   93 (317)
T ss_dssp             EEEEEESSSCEEEEEECC
T ss_pred             EEEEEECCCCcEEEEEEE
Confidence            999999999876654433

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=98.18  E-value=1.4e-06  Score=73.87  Aligned_cols=71  Identities=23%  Similarity=0.409  Sum_probs=48.8

Q ss_pred             cccccccccccccccccceeeeEeecCCCC-----eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPA-----AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p-----~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      |.+...+. ..+.+|+.++|.|.+.+.+..     .+.|+++|..+..            ..     ..+.+.|.+++..
T Consensus         9 P~l~~~p~-~~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~------------~~-----~~~~l~i~~v~~~   70 (108)
T 4hwn_A            9 PILRAVPS-AEPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS------------RG-----LSSEFQIPTASED   70 (108)
T ss_dssp             CEEEEESC-SSCBTTCCEEEEEEC---------CCEEEEEETTEEEEE------------EE-----SCCEEEESSCCGG
T ss_pred             CEEEecCC-CcCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC------------CC-----cccEEEeCccCcc
Confidence            34433333 357789999999999865544     4999999876531            00     1237899999999


Q ss_pred             CCeEEEEEEecCCC
Q psy1672         330 DSGRFYCVAENRAG  343 (600)
Q Consensus       330 d~G~Y~C~a~N~~G  343 (600)
                      |+|.|+|.+.|..|
T Consensus        71 dsG~Y~C~~~~~~~   84 (108)
T 4hwn_A           71 HSGSYWCEAATEDN   84 (108)
T ss_dssp             GCEEEEEEEECTTS
T ss_pred             cCeEEEEEEEeCCC
Confidence            99999999999875

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.17  E-value=2.1e-06  Score=98.79  Aligned_cols=95  Identities=19%  Similarity=0.301  Sum_probs=69.3

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCc-ccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNT-AFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~-~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |.+...+....+..|+.++|.|.+.|.|.|.|.|++++..+.... ......+..+ .+      +.|.|.+++..|.|.
T Consensus       715 P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~-~~------~~L~i~~v~~~d~G~  787 (816)
T 3dmk_A          715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV-EE------GTLHVDNIQKTNEGY  787 (816)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEE-ET------TEEEECSCCGGGCEE
T ss_pred             CceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEe-cC------CEEEECcCChhhCeE
Confidence            333334455667789999999999999999999999775443211 1111111211 22      379999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEc
Q psy1672         334 FYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      |+|.|.|.+|.+...+.+.....
T Consensus       788 Y~C~a~N~~G~~~~~v~~~~~~~  810 (816)
T 3dmk_A          788 YLCEAINGIGSGLSAVIMISVQA  810 (816)
T ss_dssp             EEEEEECSSSSCEEEEEEEEEEC
T ss_pred             EEEEEEeCCCCCcEEEEEEEeec
Confidence            99999999999999988877543

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=98.17  E-value=2.6e-06  Score=87.27  Aligned_cols=98  Identities=20%  Similarity=0.317  Sum_probs=69.6

Q ss_pred             cccccccccccccccccccceeeeEeecCCC-----------CeeEEEEcCeeccCCcccC---ccceEEEeeCCceeee
Q psy1672         253 CKPEIRMDSRYVEAVSSENATVVCRVDSIPP-----------AAISWYWNGRLLLNNTAFS---SYQRIFVIEQGEYERK  318 (600)
Q Consensus       253 C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~-----------p~i~W~~~g~~l~~~~~~~---~~~~~~~~~~g~~~~~  318 (600)
                      |..........+.+.+|+.+.|.|.+.+.|.           +.|.|++++..........   ...++.. .      .
T Consensus         6 c~~~~~~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~-~------~   78 (349)
T 4dep_C            6 CDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISK-E------K   78 (349)
T ss_dssp             CEEEEECCCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEE-E------T
T ss_pred             ccccccceeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEee-c------C
Confidence            4444444456788899999999999997664           8999999874221110000   1122211 1      2


Q ss_pred             eeEEEecCCCCCCeEEEEEEecCCCceeEEEEEEEEEcc
Q psy1672         319 SSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       319 s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      +.|.|.+++..|+|.|+|.|.|..|.....+.|.|...+
T Consensus        79 ~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~  117 (349)
T 4dep_C           79 DVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKD  117 (349)
T ss_dssp             TEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred             CEEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCC
Confidence            379999999999999999999999988888888887643

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.16  E-value=2.2e-06  Score=89.04  Aligned_cols=86  Identities=22%  Similarity=0.397  Sum_probs=63.7

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      ..+..|+.+.|.|.+.|.|.+.+.|++++.............+...       ..+.|.|.+++..|.|.|+|.|.|..|
T Consensus       222 ~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~n~~g  294 (388)
T 2v5m_A          222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ-------VSGTLIIKDAVVEDSGKYLCVVNNSVG  294 (388)
T ss_dssp             EEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEE-------ETTEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             eEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceec-------ccCEEEECcCCHHHCeEEEEEEecCCC
Confidence            4467899999999999999999999997543221111111112211       124799999999999999999999999


Q ss_pred             ceeEEEEEEEEEc
Q psy1672         344 IADANFTLQVTYR  356 (600)
Q Consensus       344 ~~~~~v~L~V~~~  356 (600)
                      ..+..+.|.|...
T Consensus       295 ~~~~~~~l~V~~~  307 (388)
T 2v5m_A          295 GESVETVLTVTAP  307 (388)
T ss_dssp             EEEEEEEEEEEEE
T ss_pred             ceeEEEEEEEeCC
Confidence            9888888888654

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.16  E-value=4.1e-06  Score=78.61  Aligned_cols=82  Identities=13%  Similarity=0.060  Sum_probs=53.8

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      ..+.+|+.++|.|.+.+. .+.+.|+++|..+....     .+.....++  .....|.|.+++.+|.|.|+|.|.|..+
T Consensus       110 ~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~-----~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          110 PVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQC-----LNSQPHARG--SSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             SEEETTCCEEEEEECSSC-CSEEEEEEC------CE-----EEC--------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             cccCCCCcEEEEEecCCC-CcEEEEEECCCccCCcc-----ccccccCCC--cceeEEEecccCcccCeEEEEEEEeCCC
Confidence            567789999999999988 78999999987653211     000011111  1235899999999999999999999876


Q ss_pred             ce-----eEEEEEEE
Q psy1672         344 IA-----DANFTLQV  353 (600)
Q Consensus       344 ~~-----~~~v~L~V  353 (600)
                      ..     +..+.|.|
T Consensus       182 ~~~~s~~S~~~~l~V  196 (198)
T 1ugn_A          182 PYEWSLPSDLLELLV  196 (198)
T ss_dssp             TTEECCCCCCEEEEE
T ss_pred             CccccCcCceEEEEe
Confidence            32     44455555

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=98.16  E-value=1.7e-06  Score=81.15  Aligned_cols=89  Identities=17%  Similarity=0.177  Sum_probs=61.9

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+. ..+.+|+.++|.|.+.+.|. .+.|++++..+....      +  ...  .....+.|.|.+++..|.|.|
T Consensus         6 P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~------~--~~~--~~~~~~~L~i~~v~~~D~G~Y   73 (196)
T 2d3v_A            6 ATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDT------Q--NPL--EPKNKARFSIPSMTEHHAGRY   73 (196)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEE------E--CCC--SSTTEEEEEESSCCGGGCEEE
T ss_pred             CEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCccc------c--ccc--CCccccEEEeccCChhHCeEE
Confidence            34443343 36789999999999998765 999999887653211      0  000  011235799999999999999


Q ss_pred             EEEEecCCCce--eEEEEEEEEE
Q psy1672         335 YCVAENRAGIA--DANFTLQVTY  355 (600)
Q Consensus       335 ~C~a~N~~G~~--~~~v~L~V~~  355 (600)
                      +|.|.|..|..  +..+.|.|..
T Consensus        74 ~C~a~n~~g~~~~s~~~~l~V~~   96 (196)
T 2d3v_A           74 RCYYYSPAGWSEPSDPLELVVTG   96 (196)
T ss_dssp             EEEEEETTEECBCCCCEEEEEEC
T ss_pred             EEEEeCCCCcCCcCccEEEEecC
Confidence            99999988743  3456666654

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.15  E-value=3.2e-06  Score=85.93  Aligned_cols=82  Identities=21%  Similarity=0.367  Sum_probs=54.1

Q ss_pred             ccccccceeeeEeecCCC-C-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         266 AVSSENATVVCRVDSIPP-A-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P~-p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      +.+|+.+.|.|.+.|.++ + .|.|+++|+.+....    ..+.....++.+...+.|.|..++..|.|.|+|.|.|..|
T Consensus       232 ~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~----~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~  307 (327)
T 2wng_A          232 VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTET----ASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQ  307 (327)
T ss_dssp             CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEE----CCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTC
T ss_pred             cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcc----cCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCC
Confidence            668999999999998544 4 799999998875432    1122233345455557899999999999999999999998


Q ss_pred             ce-eEEEEE
Q psy1672         344 IA-DANFTL  351 (600)
Q Consensus       344 ~~-~~~v~L  351 (600)
                      .. .+++.+
T Consensus       308 ~~~s~~~~~  316 (327)
T 2wng_A          308 PAVSKSHDL  316 (327)
T ss_dssp             CCEEEEEEC
T ss_pred             CCchhheEE
Confidence            75 444443

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.14  E-value=3.2e-06  Score=74.12  Aligned_cols=92  Identities=22%  Similarity=0.379  Sum_probs=60.1

Q ss_pred             cccccccccccccceeeeEeec---CCCCeeEEEEcCeeccCCcc------c-----------------Cc-cceEEEee
Q psy1672         259 MDSRYVEAVSSENATVVCRVDS---IPPAAISWYWNGRLLLNNTA------F-----------------SS-YQRIFVIE  311 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g---~P~p~i~W~~~g~~l~~~~~------~-----------------~~-~~~~~~~~  311 (600)
                      ..+..+.+..|+.++|.|.+..   .+.+.+.|++.+........      +                 .. ..|+.+..
T Consensus         9 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~   88 (135)
T 1xt5_A            9 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN   88 (135)
T ss_dssp             CSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESC
T ss_pred             CCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEec
Confidence            3456678889999999999753   57789999995432100000      0                 00 02232221


Q ss_pred             CCceeeeeeEEEecCCCCCCeEEEEEEecCC-----CceeEEEEEEEE
Q psy1672         312 QGEYERKSSLVLTNAQESDSGRFYCVAENRA-----GIADANFTLQVT  354 (600)
Q Consensus       312 ~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~-----G~~~~~v~L~V~  354 (600)
                      .    ....|.|.+++.+|+|.|+|.+.|..     |.....+.|.|.
T Consensus        89 ~----~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~  132 (135)
T 1xt5_A           89 L----AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVT  132 (135)
T ss_dssp             T----TSCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEEE
T ss_pred             C----CCCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEEe
Confidence            1    13579999999999999999999954     444577777774

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.14  E-value=1.9e-06  Score=82.45  Aligned_cols=78  Identities=17%  Similarity=0.201  Sum_probs=57.7

Q ss_pred             cccccccceeeeEeecC-CCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         265 EAVSSENATVVCRVDSI-PPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      .+..|+.++|.|.+.|. |.| .|.|+++|+.+....      ......++.+...+.|.|.++...| |.|+|.|.|..
T Consensus       138 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~------~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~  210 (222)
T 1q9r_B          138 AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT------FPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPA  210 (222)
T ss_dssp             CCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE------EEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGG
T ss_pred             cccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEe------ccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccC
Confidence            35679999999999985 888 999999887653211      1112234444556789999999889 99999999999


Q ss_pred             CceeEEE
Q psy1672         343 GIADANF  349 (600)
Q Consensus       343 G~~~~~v  349 (600)
                      |......
T Consensus       211 ~~~~~~~  217 (222)
T 1q9r_B          211 SSTKVDK  217 (222)
T ss_dssp             GTEEEEE
T ss_pred             CCCcEEE
Confidence            8765443

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.14  E-value=9.6e-06  Score=68.50  Aligned_cols=85  Identities=18%  Similarity=0.230  Sum_probs=56.8

Q ss_pred             cccccccccceeeeEeecCCCC-----eeEEEEcCee-c---cCCcc-----c-CccceEEEeeCCceeeeeeEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPA-----AISWYWNGRL-L---LNNTA-----F-SSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p-----~i~W~~~g~~-l---~~~~~-----~-~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      .+.+..|++++|.|.+.+.|.+     .+.|++++.. +   .....     . ....+..+..+     ...|.|.+++
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~sL~I~~v~   77 (110)
T 1ncn_A            3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSD-----SWTLRLHNLQ   77 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETT-----TTEEEECSCC
T ss_pred             EEEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEECC-----CEEEEEcCCC
Confidence            3567889999999999765543     3999996531 1   01100     0 01123333222     2489999999


Q ss_pred             CCCCeEEEEEEecCCCceeEEEEEE
Q psy1672         328 ESDSGRFYCVAENRAGIADANFTLQ  352 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~~G~~~~~v~L~  352 (600)
                      .+|+|.|+|.+.+..+.....+.+.
T Consensus        78 ~~D~G~Y~C~v~~~~~~~~~~~~~~  102 (110)
T 1ncn_A           78 IKDKGLYQCIIHHKKPTGMIRIHQM  102 (110)
T ss_dssp             GGGCEEEEEEEEEECSSSEEEEEEE
T ss_pred             hHHCEEEEEEEEcCCCCceEEEEEE
Confidence            9999999999999988876655544

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.14  E-value=4.7e-06  Score=79.09  Aligned_cols=94  Identities=15%  Similarity=0.205  Sum_probs=61.6

Q ss_pred             cccccccccccccccceeeeEeecC-CCCeeEEEEcC--eecc---C-Cc------ccCccceEEEeeCCceeeeeeEEE
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSI-PPAAISWYWNG--RLLL---N-NT------AFSSYQRIFVIEQGEYERKSSLVL  323 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~~g--~~l~---~-~~------~~~~~~~~~~~~~g~~~~~s~L~I  323 (600)
                      +...+ .+.+.+|+.++|.|.+.+. |.+.+.|++..  ....   . ..      ......++.+...   .....|.|
T Consensus         4 v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~L~I   79 (218)
T 3s96_B            4 LTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSS---GADRYLSI   79 (218)
T ss_dssp             EECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEE---TTEEEEEE
T ss_pred             EEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecC---CceEEEEE
Confidence            34445 7788999999999999998 89999999832  1110   0 00      0000112222211   12457999


Q ss_pred             ecCCCCCCeEEEEEEecCCC-----ceeEEEEEEEE
Q psy1672         324 TNAQESDSGRFYCVAENRAG-----IADANFTLQVT  354 (600)
Q Consensus       324 ~~v~~~d~G~Y~C~a~N~~G-----~~~~~v~L~V~  354 (600)
                      .+++.+|+|.|+|.|.|..|     .....+.|.|.
T Consensus        80 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~  115 (218)
T 3s96_B           80 SNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVL  115 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEE
T ss_pred             ccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEe
Confidence            99999999999999999887     22334566665

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=98.14  E-value=2.2e-06  Score=87.49  Aligned_cols=93  Identities=17%  Similarity=0.208  Sum_probs=71.5

Q ss_pred             cccccccccccccccccceeeeEee-------cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCC
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVD-------SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~-------g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      |.+...+....+.+|+.+.|.|.+.       +.|.+.|.|++++..+.....  ...++. ..+      +.|.|.+++
T Consensus        19 p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~--~~~~~~-~~~------~~L~i~~v~   89 (339)
T 3o4o_C           19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGE--EETRMW-AQD------GALWLLPAL   89 (339)
T ss_dssp             EEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCC--SSSCEE-EET------TEEEESSBC
T ss_pred             HhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCcc--ccccEE-eeC------CeEEECCCC
Confidence            4555566778889999999999998       889999999998876322111  012222 222      379999999


Q ss_pred             CCCCeEEEEEEecCCCceeEEEEEEEEEc
Q psy1672         328 ESDSGRFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      ..|.|.|+|.|.|..|.....+.|.|...
T Consensus        90 ~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~  118 (339)
T 3o4o_C           90 QEDSGTYVCTTRNASYCDKMSIELRVFEN  118 (339)
T ss_dssp             TTCCEEEECCEEETTEEEEEEEEEEEECS
T ss_pred             cccCEEEEEEEECCcceEEEEEEEEEEcC
Confidence            99999999999999998888888888654

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.14  E-value=1.7e-06  Score=83.21  Aligned_cols=81  Identities=17%  Similarity=0.323  Sum_probs=57.0

Q ss_pred             ccccccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         266 AVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      +..|+.++|.|.+.|.++  +.|.|+++|+.+......   .......++.+...+.|.|..+...|.|.|+|.|.|..+
T Consensus       147 ~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~---~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  223 (234)
T 2j6e_L          147 ELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVET---TKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS  223 (234)
T ss_dssp             HHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEE---CCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTB
T ss_pred             HhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccc---cCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCC
Confidence            345889999999998544  389999999887543210   000111233334456799999999999999999999988


Q ss_pred             ceeEEE
Q psy1672         344 IADANF  349 (600)
Q Consensus       344 ~~~~~v  349 (600)
                      ..++++
T Consensus       224 ~~~~~~  229 (234)
T 2j6e_L          224 TVEKTV  229 (234)
T ss_dssp             CCCEEE
T ss_pred             ceEEec
Confidence            765554

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.13  E-value=5.4e-06  Score=70.64  Aligned_cols=92  Identities=24%  Similarity=0.296  Sum_probs=57.7

Q ss_pred             cccccccccccceeeeEeec-CCCCeeEEEEcCee--------cc-CCcc--cCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         261 SRYVEAVSSENATVVCRVDS-IPPAAISWYWNGRL--------LL-NNTA--FSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g-~P~p~i~W~~~g~~--------l~-~~~~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      +..+.+.+|+.++|.|.+.+ .....+.|++....        +. ....  .....++.+..+ .......|.|.+++.
T Consensus         4 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~sL~I~~v~~   82 (116)
T 2or8_A            4 YVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGH-ISEGDVSLTIENSVE   82 (116)
T ss_dssp             CEEEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSC-GGGTBCCEEESSCCG
T ss_pred             cceEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecC-CCCCeEEEEECCCCc
Confidence            45677889999999999875 34567999995411        00 0000  001122222111 111245799999999


Q ss_pred             CCCeEEEEEEecCCCce--eEEEEEEE
Q psy1672         329 SDSGRFYCVAENRAGIA--DANFTLQV  353 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G~~--~~~v~L~V  353 (600)
                      +|+|.|.|.+.+..+..  ...+.|.|
T Consensus        83 ~DsG~Y~C~v~~~~~~~~~~~~~~l~V  109 (116)
T 2or8_A           83 SDSGLYCCRVEIPGWFNDQKVTFSLQV  109 (116)
T ss_dssp             GGCEEEEEEECCSSTTCCEEEEEEEEE
T ss_pred             ccCEEEEEEEEcCCcccccEEEEEEEE
Confidence            99999999999976554  45555555

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.13  E-value=6.1e-07  Score=85.10  Aligned_cols=89  Identities=24%  Similarity=0.367  Sum_probs=60.7

Q ss_pred             cccccccccccccccccceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      |.+........+..|+.++|.|.+.|. |+ +.|.|+++|+.+.......   ......++ +...+.|.|.+++.+|.|
T Consensus       114 p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~---~~~~~~~~-~~~~s~L~i~~~~~~d~G  189 (212)
T 1nfd_E          114 PKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT---KPSKQGQN-YMTSSYLSLTADQWKSHN  189 (212)
T ss_dssp             CEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC---CCBCSSSC-EEEEEBCCEEHHHHHTCS
T ss_pred             CEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecC---CceecCCC-ceEEEEEEEchhhcCCCC
Confidence            444333333345578999999999987 54 7999999998876442110   00011122 334567999999999999


Q ss_pred             EEEEEEecCCCceeE
Q psy1672         333 RFYCVAENRAGIADA  347 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~  347 (600)
                      .|+|.|.|..+..++
T Consensus       190 ~Y~C~a~n~~~~~~~  204 (212)
T 1nfd_E          190 RVSCQVTHEGETVEK  204 (212)
T ss_dssp             CEEEEEECTTTTCCC
T ss_pred             eEEEEEEeCCceEEE
Confidence            999999999876443

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.13  E-value=3.1e-06  Score=83.20  Aligned_cols=95  Identities=16%  Similarity=0.272  Sum_probs=65.1

Q ss_pred             cccccccccccceeeeEe---ecCCCCeeEEEEc-CeeccCCccc---------------CccceEEEeeCCceeeeeeE
Q psy1672         261 SRYVEAVSSENATVVCRV---DSIPPAAISWYWN-GRLLLNNTAF---------------SSYQRIFVIEQGEYERKSSL  321 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v---~g~P~p~i~W~~~-g~~l~~~~~~---------------~~~~~~~~~~~g~~~~~s~L  321 (600)
                      +....+..|+.++|.|.+   .+.|.+.+.|+++ +.........               ....++.+..+ .....+.|
T Consensus       125 p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L  203 (268)
T 3mj6_A          125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGD-ISRNDGSI  203 (268)
T ss_dssp             CSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSC-GGGTBCCE
T ss_pred             CCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeecc-CCCCeEEE
Confidence            345678899999999999   5779999999993 3221110000               00011222111 11224589


Q ss_pred             EEecCCCCCCeEEEEEEecCCCceeEEEEEEEEEc
Q psy1672         322 VLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       322 ~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      .|.+++..|.|.|+|.|.|..|.....+.|.|...
T Consensus       204 ~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~  238 (268)
T 3mj6_A          204 KLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD  238 (268)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcC
Confidence            99999999999999999999999888888888544

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.13  E-value=1.7e-06  Score=92.13  Aligned_cols=71  Identities=20%  Similarity=0.285  Sum_probs=58.2

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ....+.+|+.+.|.|.+.|.|.|.|.|++++..+..              .|.     .+   .++..|.|.|+|.|.|.
T Consensus       378 ~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~--------------~g~-----~~---~v~~~d~G~Y~C~a~N~  435 (450)
T 1z7z_I          378 GNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP--------------IGE-----SV---TVTRDLEGTYLCRARST  435 (450)
T ss_dssp             SEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC--------------TTS-----CE---ECCGGGCEEEEEEEEET
T ss_pred             CceeEcCCCeEEEEEecccCCCCcEEEEECCcccCC--------------CCC-----eE---eEehhhCeEEEEEEEeC
Confidence            455778899999999999999999999998863221              121     12   57889999999999999


Q ss_pred             CCceeEEEEEEEE
Q psy1672         342 AGIADANFTLQVT  354 (600)
Q Consensus       342 ~G~~~~~v~L~V~  354 (600)
                      .|..+..+.|.|.
T Consensus       436 ~G~~~~~~~l~V~  448 (450)
T 1z7z_I          436 QGEVTREVTVNVL  448 (450)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCceeEEEEEEEE
Confidence            9999999998884

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.13  E-value=4.2e-06  Score=72.11  Aligned_cols=95  Identities=22%  Similarity=0.291  Sum_probs=58.1

Q ss_pred             cccccccccccceeeeEeecC----CCCeeEEEEcCee------cc-C--Ccc-----cCccceEEEeeCCceeeeeeEE
Q psy1672         261 SRYVEAVSSENATVVCRVDSI----PPAAISWYWNGRL------LL-N--NTA-----FSSYQRIFVIEQGEYERKSSLV  322 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~----P~p~i~W~~~g~~------l~-~--~~~-----~~~~~~~~~~~~g~~~~~s~L~  322 (600)
                      +..+.+..|+.++|.|.+...    +...+.|++.+..      +. .  ...     .....|+.+..+ ......+|.
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~   84 (124)
T 1neu_A            6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGD-PSWKDGSIV   84 (124)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCB-GGGTBCCEE
T ss_pred             CCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecC-CcCCeEEEE
Confidence            456778899999999998643    4678999984320      10 0  000     000123333211 011235899


Q ss_pred             EecCCCCCCeEEEEEEecCCCc--eeEEEEEEEEEc
Q psy1672         323 LTNAQESDSGRFYCVAENRAGI--ADANFTLQVTYR  356 (600)
Q Consensus       323 I~~v~~~d~G~Y~C~a~N~~G~--~~~~v~L~V~~~  356 (600)
                      |.+++.+|+|.|+|.+.+..+.  ....+.|.|..+
T Consensus        85 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~  120 (124)
T 1neu_A           85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK  120 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC-
T ss_pred             EccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecC
Confidence            9999999999999999998875  366777877543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.12  E-value=1.5e-06  Score=82.21  Aligned_cols=92  Identities=15%  Similarity=0.264  Sum_probs=63.6

Q ss_pred             cccccccccccccccccceeeeEeecCC--CCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIP--PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P--~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      |.+...+....+..|+.++|.|.+.|.+  .+.+.|+++|+.+.....   ........++.+...+.|.|..+...|.|
T Consensus       112 P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~---~~~~~~~~~~~~~~~s~L~i~~~~~~d~g  188 (211)
T 3tv3_L          112 PSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVE---TTTPSKQSNNKYAASSYLSLTPEQWKSHR  188 (211)
T ss_dssp             CEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEE---ECCCEECTTSSEEEEEEEEECHHHHHHSS
T ss_pred             CeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcc---cCCceECCCCCEEEEEEEEEcHHHhCCCC
Confidence            4444334344444799999999999853  578999999988764221   11111223444455578999999989999


Q ss_pred             EEEEEEecCCCceeEEE
Q psy1672         333 RFYCVAENRAGIADANF  349 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v  349 (600)
                      .|+|.|.|..+...+.+
T Consensus       189 ~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          189 SYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             CEEEEEEETTEEEEEEE
T ss_pred             eEEEEEEECCCCEEeec
Confidence            99999999987766554

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=98.12  E-value=4e-06  Score=76.23  Aligned_cols=78  Identities=21%  Similarity=0.475  Sum_probs=58.8

Q ss_pred             ccccccccccccccccceeeeEeecCC-CCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      .+...+....+..|+.+.|.|.+.+.| .+.+.|++++..+....                   ..+.+.+++..|.|.|
T Consensus         6 ~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~-------------------~~~~~~~~~~~d~G~Y   66 (170)
T 3ry4_A            6 VLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT-------------------QPSYRFKANNNDSGEY   66 (170)
T ss_dssp             EEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCC-------------------SSEEEEECCGGGCEEE
T ss_pred             EEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCc-------------------cceEEEecccccCeEE
Confidence            334445556788999999999999887 57999999988765421                   1456778999999999


Q ss_pred             EEEEecCCCceeEEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~  354 (600)
                      +|.|.|..+..  .+.|.|.
T Consensus        67 ~C~~~~~~~s~--~~~l~v~   84 (170)
T 3ry4_A           67 TCQTGQTSLSD--PVHLTVL   84 (170)
T ss_dssp             EEEETTSBCCC--CEEEEEE
T ss_pred             EEEEeCCCceE--eEEEEEE
Confidence            99999865544  3555554

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.12  E-value=3.8e-06  Score=71.42  Aligned_cols=80  Identities=20%  Similarity=0.291  Sum_probs=53.6

Q ss_pred             cccccccccccccceeeeEeecC--CCCeeEEEEc--CeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSI--PPAAISWYWN--GRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~--P~p~i~W~~~--g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      ..+..+.+.+|+.++|.|.+.+.  +.+.+.|++.  +.....  ......++.+..+. ......|+|.+++.+|+|.|
T Consensus         5 q~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~--~~~~~~r~~~~~~~-~~~~~~L~I~~v~~~DsG~Y   81 (111)
T 2ywz_A            5 QTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEK--TISIGGRYDETVDK-GSKSFSLRISDLRVEDSGTY   81 (111)
T ss_dssp             EECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCE--ECCSBTTEEEEEET-TTTEEEEEECSCCGGGCEEE
T ss_pred             ECCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceE--eeEeCCCEEEEEeC-CCCEEEEEECCCChhcCEEE
Confidence            34567788999999999999865  5678999984  221100  00012233322110 01246899999999999999


Q ss_pred             EEEEecC
Q psy1672         335 YCVAENR  341 (600)
Q Consensus       335 ~C~a~N~  341 (600)
                      .|.+.|.
T Consensus        82 ~C~~~~~   88 (111)
T 2ywz_A           82 KCQADYS   88 (111)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcC
Confidence            9999983

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.12  E-value=1.7e-06  Score=81.95  Aligned_cols=90  Identities=20%  Similarity=0.316  Sum_probs=60.2

Q ss_pred             cccccccccccccccccceeeeEeec-CCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDS-IPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g-~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      |.+........+..|+.++|.|.+.| .|.+ .+.|+++|+.+......  ........++.+...+.|.|.+++..|.|
T Consensus       113 p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~--~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  190 (213)
T 3d9a_L          113 PTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN--SWTDQDSKDSTYSMSSTLTLTKDEYERHN  190 (213)
T ss_dssp             CEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE--EECCCCTTTCCEEEEEEEEEEHHHHHHCC
T ss_pred             ceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeee--cCCCccCCCCCEEEEEEEEEeccccCCCC
Confidence            44433333333447889999999987 5665 89999999887654100  00011112333445678999999999999


Q ss_pred             EEEEEEecCCCcee
Q psy1672         333 RFYCVAENRAGIAD  346 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~  346 (600)
                      .|+|.|.|......
T Consensus       191 ~Y~C~a~n~~~~~~  204 (213)
T 3d9a_L          191 SYTCEATHKTSTSP  204 (213)
T ss_dssp             EEEEEEECTTCSSC
T ss_pred             EEEEEEEEccCCCc
Confidence            99999999887653

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.12  E-value=5e-06  Score=70.35  Aligned_cols=83  Identities=14%  Similarity=0.338  Sum_probs=56.2

Q ss_pred             ccccccccccccccccceeeeEeecCCCCeeEEEEcC--ee---cc-CCcc--cCccceEEEeeCCceeeeeeEEEecCC
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG--RL---LL-NNTA--FSSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g--~~---l~-~~~~--~~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      .+...+..+.+.+|+.++|.|.+.+.+.+.+.|++..  ..   +. ....  .....|+.+...+   ....|+|.+++
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~---~~~~L~I~~v~   81 (109)
T 2q20_A            5 QMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSG---TDFTFTISSLQ   81 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET---TEEEEEESSCC
T ss_pred             cEEeeCCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccC---CEEEEEECCCC
Confidence            4444566788999999999999998888899999843  21   11 0000  0011233332211   24579999999


Q ss_pred             CCCCeEEEEEEecC
Q psy1672         328 ESDSGRFYCVAENR  341 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~  341 (600)
                      .+|+|.|.|.+.|.
T Consensus        82 ~~DsG~Y~C~~~~~   95 (109)
T 2q20_A           82 PEDIATYYCQQYDN   95 (109)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             hhhCEEEEEEEeeC
Confidence            99999999999985

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.12  E-value=9.4e-06  Score=68.98  Aligned_cols=94  Identities=15%  Similarity=0.175  Sum_probs=61.8

Q ss_pred             cccccccccccceeeeEeecCCC-CeeEEEEcCe-----ecc-CCcc--cCccceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPP-AAISWYWNGR-----LLL-NNTA--FSSYQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~-p~i~W~~~g~-----~l~-~~~~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      +..+.+.+|+.++|.|.+.+... ..+.|++...     .+. ....  .....|+.+..+. ......|+|.+++.+|+
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~-~~~~~sL~I~~~~~~Ds   86 (113)
T 1zox_A            8 PEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQ-RDFIFTVTMEDLRMSDA   86 (113)
T ss_dssp             CSEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEET-TTTEEEEEECSCCGGGC
T ss_pred             CCEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECC-cCCEEEEEEccCCHHHC
Confidence            45678899999999999985433 4699999532     111 0000  0112333333211 11245899999999999


Q ss_pred             eEEEEEEecCCCceeEEEEEEEEE
Q psy1672         332 GRFYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       332 G~Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      |.|.|.+.+........+.|.|..
T Consensus        87 G~Y~C~v~~~~~~~~~~v~L~V~~  110 (113)
T 1zox_A           87 GIYWCGITKGGLDPMFKVTVNIGP  110 (113)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEEEC
T ss_pred             EEEEEeeEcCCCCccEEEEEEEEc
Confidence            999999999865667778887753

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=98.12  E-value=3.4e-06  Score=79.18  Aligned_cols=89  Identities=15%  Similarity=0.165  Sum_probs=61.2

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+. ..+.+|+.++|.|.+.+.|. .+.|++++..+.....     ....     ....+.|.|.+++..|.|.|
T Consensus         6 P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-----~~~~-----~~~~~~L~i~~v~~~D~G~Y   73 (198)
T 1ugn_A            6 PTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITR-----IPQE-----LVKKGQFPIPSITWEHTGRY   73 (198)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHT-----SCHH-----HHTTTEEEESSCCGGGCEEE
T ss_pred             CeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccc-----cccc-----CCcccEEEECCCCHHHCeEE
Confidence            34443343 46789999999999998775 7999998876531110     0000     01124799999999999999


Q ss_pred             EEEEecCC-C--ceeEEEEEEEEE
Q psy1672         335 YCVAENRA-G--IADANFTLQVTY  355 (600)
Q Consensus       335 ~C~a~N~~-G--~~~~~v~L~V~~  355 (600)
                      +|.|.|.. |  ..+..+.|.|..
T Consensus        74 ~C~a~n~~~g~~~~s~~~~l~V~~   97 (198)
T 1ugn_A           74 RCYYGSDTAGRSESSDPLELVVTG   97 (198)
T ss_dssp             EEEEEETTTEECCCCCCEEEEEEC
T ss_pred             EEEEECCCCCcccCCccEEEEEcc
Confidence            99999987 5  334556666644

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.11  E-value=7.7e-06  Score=69.02  Aligned_cols=81  Identities=16%  Similarity=0.292  Sum_probs=54.8

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEEcC--e---ecc-CCccc--CccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG--R---LLL-NNTAF--SSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g--~---~l~-~~~~~--~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ...+..+.+.+|+.++|.|.+.+.+.+.+.|++..  .   .+. .....  ....++.+...   .....|+|.+++.+
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~---~~~~~L~I~~v~~~   81 (108)
T 1qfw_M            5 TQSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGS---ATDFTLTISSVQAE   81 (108)
T ss_dssp             EEECSCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBC---SSEEEEEESSCCTT
T ss_pred             EEeCCeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcC---CCEEEEEECCCChh
Confidence            33456778899999999999998877899999843  1   111 10000  01123332211   12457999999999


Q ss_pred             CCeEEEEEEecC
Q psy1672         330 DSGRFYCVAENR  341 (600)
Q Consensus       330 d~G~Y~C~a~N~  341 (600)
                      |+|.|.|.+.|.
T Consensus        82 DsG~Y~C~~~~~   93 (108)
T 1qfw_M           82 DFADYHCGQTYN   93 (108)
T ss_dssp             CCSEEEEEECSS
T ss_pred             hCEEEEEEEccC
Confidence            999999999986

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=98.10  E-value=3.4e-06  Score=79.02  Aligned_cols=70  Identities=11%  Similarity=0.136  Sum_probs=51.6

Q ss_pred             cccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      .+..|+.++|.|.+.+ +++.+.|++++..+....     .......   ....+.|.|.+++.+|.|.|+|.|.|..+
T Consensus       110 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-----~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          110 LVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLC-----LRSEHGA---QQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGS-----EEEEEEE---EEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             eecCCCeEEEEEecCC-CCCEEEEEeCCCccccee-----ecccccc---cCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            5678999999999987 456899999887553221     0111100   11245799999999999999999999986

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.10  E-value=7.3e-06  Score=71.29  Aligned_cols=92  Identities=14%  Similarity=0.215  Sum_probs=59.9

Q ss_pred             ccccccccccccceeeeEeecCCCC----eeEEEEcCe----------------eccCCcccCccceEEEeeCCce----
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPPA----AISWYWNGR----------------LLLNNTAFSSYQRIFVIEQGEY----  315 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~p----~i~W~~~g~----------------~l~~~~~~~~~~~~~~~~~g~~----  315 (600)
                      .+..+.+..|+.++|.|.+.+.+.+    .+.|++...                .+....  ....|+.+..++..    
T Consensus         8 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~R~~~~~~~~~~g~~   85 (128)
T 3r0n_A            8 VLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPK--PGSERLSFVSAKQSTGQD   85 (128)
T ss_dssp             CCSEEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSS--SCGGGEEESSCBCCCSTT
T ss_pred             cCCeEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCccccccc--ccCCcEEEeccccccccc
Confidence            3456788899999999999876655    789999521                111000  01234444332100    


Q ss_pred             ----eeeeeEEEecCCCCCCeEEEEEEec-CCCceeEEEEEEE
Q psy1672         316 ----ERKSSLVLTNAQESDSGRFYCVAEN-RAGIADANFTLQV  353 (600)
Q Consensus       316 ----~~~s~L~I~~v~~~d~G~Y~C~a~N-~~G~~~~~v~L~V  353 (600)
                          .....|.|.+++.+|+|.|+|.+.+ ..|..+..+.|.|
T Consensus        86 ~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V  128 (128)
T 3r0n_A           86 TEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV  128 (128)
T ss_dssp             CCCBCSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             cccCCCCeEEEEccCCchhCeEEEEEEEeCCCCCcccEEEEEC
Confidence                1135899999999999999998765 5577777776653

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=98.09  E-value=3.2e-06  Score=81.91  Aligned_cols=90  Identities=20%  Similarity=0.283  Sum_probs=61.4

Q ss_pred             ccccccccccccceeeeEeec---CCCCeeEEEEcCeeccCCcc------------------------cCccceEEEeeC
Q psy1672         260 DSRYVEAVSSENATVVCRVDS---IPPAAISWYWNGRLLLNNTA------------------------FSSYQRIFVIEQ  312 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g---~P~p~i~W~~~g~~l~~~~~------------------------~~~~~~~~~~~~  312 (600)
                      .+..+.+.+|+.++|.|.+.+   .|.+.|.|++++........                        .....++.+..+
T Consensus         8 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   87 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANL   87 (250)
T ss_dssp             SCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCT
T ss_pred             CCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccC
Confidence            345678899999999999987   88899999997643210000                        000112222111


Q ss_pred             CceeeeeeEEEecCCCCCCeEEEEEEecCCCce-----eEEEEEEE
Q psy1672         313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIA-----DANFTLQV  353 (600)
Q Consensus       313 g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~-----~~~v~L~V  353 (600)
                      +    ...|.|.+++.+|.|.|+|.|.|..+..     .+.+.|.|
T Consensus        88 ~----~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V  129 (250)
T 2fbo_J           88 A----APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV  129 (250)
T ss_dssp             T----SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEE
T ss_pred             C----cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEE
Confidence            1    2479999999999999999999988753     44666666

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.09  E-value=2.6e-06  Score=80.67  Aligned_cols=89  Identities=18%  Similarity=0.299  Sum_probs=59.1

Q ss_pred             cccccccccccccccccceeeeEeec-CCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDS-IPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g-~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      |.+...+....+..|+.++|.|.+.| .|++ .|.|+++|+.+......  ........++.+...+.|.|.++...|.|
T Consensus       112 P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~--~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  189 (210)
T 1lk3_L          112 PTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLD--SVTDQDSKDSTYSMSSTLSLTKADYESHN  189 (210)
T ss_dssp             CEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEE--EECCCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred             CeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceE--ccCCccCCCCCEEEEEEEEEChHHhccCC
Confidence            44433333333447899999999997 4544 89999999887643000  00011112344445678999999999999


Q ss_pred             EEEEEEecCCCce
Q psy1672         333 RFYCVAENRAGIA  345 (600)
Q Consensus       333 ~Y~C~a~N~~G~~  345 (600)
                      .|+|.|.|.....
T Consensus       190 ~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          190 LYTCEVVHKTSSS  202 (210)
T ss_dssp             EEEEEEECTTCSS
T ss_pred             cEEEEEEecCCCC
Confidence            9999999987644

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.08  E-value=5.3e-06  Score=78.48  Aligned_cols=92  Identities=13%  Similarity=0.236  Sum_probs=61.1

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEEcC--eecc---C-C--cccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG--RLLL---N-N--TAFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g--~~l~---~-~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..+..+.+..|+.++|.|.+.+.|.+.|.|++++  ..+.   . .  .......++.+...+   ....|.|.+++.+|
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~L~I~~v~~~D   82 (213)
T 3d9a_L            6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG---TDFTLSINSVETED   82 (213)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET---TEEEEEESSCCGGG
T ss_pred             eCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCC---CEEEEEECCCChhh
Confidence            3456778899999999999999998999999843  2110   0 0  000001233332221   23489999999999


Q ss_pred             CeEEEEEEecCCCcee-EEEEEEE
Q psy1672         331 SGRFYCVAENRAGIAD-ANFTLQV  353 (600)
Q Consensus       331 ~G~Y~C~a~N~~G~~~-~~v~L~V  353 (600)
                      .|.|+|.|.|..|... ..+.|.|
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V  106 (213)
T 3d9a_L           83 FGMYFCQQSNSWPYTFGGGTKLEI  106 (213)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEE
T ss_pred             CEEEEEeeecCCcceeCCCEEEEE
Confidence            9999999999887532 2235555

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.08  E-value=1.1e-05  Score=75.68  Aligned_cols=77  Identities=17%  Similarity=0.274  Sum_probs=53.2

Q ss_pred             cccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeC-CceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         267 VSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ-GEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       267 ~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~-g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      ..|+.+.|.|.+. |.|.|.|.|+++|+.+....     .+.....+ +.+...+   +..++..|.|.|+|.|.|..|.
T Consensus       119 ~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~-----~~~~~~~~~~~~~~~~---~~~v~~~d~g~Y~C~a~n~~~~  190 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAIN-----TTVSQDPETELYAVSS---KLDFNMTTNHSFMCLIKYGHLR  190 (201)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSE-----EEEEECTTTCCEEEEE---EEEEETTSCEEEEEEEEETTCC
T ss_pred             CCCCeEEEEEecCCccCCCEEEEEECCEECcccc-----ceEEecCCCcEEEEEE---EEEEEecCCCEEEEEEecCcce
Confidence            4588899999995 99999999999998776432     11222222 2122112   2344568999999999999998


Q ss_pred             eeEEEEE
Q psy1672         345 ADANFTL  351 (600)
Q Consensus       345 ~~~~v~L  351 (600)
                      .++.+.+
T Consensus       191 ~s~~~~~  197 (201)
T 1dr9_A          191 VNQTFNW  197 (201)
T ss_dssp             EEEEEEE
T ss_pred             eeeEEec
Confidence            8876654

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.08  E-value=2.8e-06  Score=80.72  Aligned_cols=91  Identities=20%  Similarity=0.332  Sum_probs=58.1

Q ss_pred             cccccccccccccccccceeeeEeec-CCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDS-IPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g-~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      |.+........+..|+.++|.|.+.+ .|.+ .|.|+++|+.+......    ......++.+...+.|.|......|.|
T Consensus       122 P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~----~~~~~~~~~~~~~s~l~i~~~~~~d~g  197 (218)
T 3s96_B          122 PTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDT----SNPTKEGNKFMASSFLHLTSDQWRSHN  197 (218)
T ss_dssp             CEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC------------------CEEEEEEEEEEHHHHHTCS
T ss_pred             ceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCceec----CcccccCCcEEEEEEEEEeHHHccCCC
Confidence            33333333344456789999999997 5666 89999999887643210    011112444444567889998888999


Q ss_pred             EEEEEEecCCCceeEEE
Q psy1672         333 RFYCVAENRAGIADANF  349 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v  349 (600)
                      .|+|.|.|..+...+.+
T Consensus       198 ~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          198 SFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             CEEEEEEETTEEEEEEE
T ss_pred             eEEEEEEeCCCcccccc
Confidence            99999999987665543

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=98.07  E-value=7.4e-06  Score=76.96  Aligned_cols=88  Identities=14%  Similarity=0.205  Sum_probs=60.9

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcc--c-----------CccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTA--F-----------SSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~--~-----------~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ....+.+|+.++|.|.+.+.+.+.+.|++++........  +           ....+..+..+      +.|.|.+++.
T Consensus         7 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~------~~L~i~~v~~   80 (208)
T 3r4d_A            7 VPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN------GSLLFQMITM   80 (208)
T ss_dssp             ESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTT------SCEEECSCCG
T ss_pred             ccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecC------CeEEEccccc
Confidence            345678999999999988888999999986532211100  0           00112222222      3799999999


Q ss_pred             CCCeEEEEEEecCC-CceeEEEEEEEEE
Q psy1672         329 SDSGRFYCVAENRA-GIADANFTLQVTY  355 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~-G~~~~~v~L~V~~  355 (600)
                      .|+|.|+|.+.|.. +.....+.|.|..
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  108 (208)
T 3r4d_A           81 KDMGVYTLDMTDENYRRTQATVRFHVHQ  108 (208)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEEEC
T ss_pred             cCCeEEEEEEEcccCceeEEEEEEEecc
Confidence            99999999999985 5556667777753

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.07  E-value=4e-06  Score=80.31  Aligned_cols=89  Identities=18%  Similarity=0.208  Sum_probs=61.5

Q ss_pred             ccccccccccccc--ccccccceeeeEeecC---CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecC
Q psy1672         253 CKPEIRMDSRYVE--AVSSENATVVCRVDSI---PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       253 C~p~i~~~~~~~~--v~~G~~v~L~C~v~g~---P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      ..|.+...+....  +..|+.++|.|.+.|.   |. +.|.|++++..+....    ........++.+...+.|.|.++
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~----~~~~~~~~~~~~~~~~~L~I~~~   83 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQ----TQTHREDYNSTIRVVSTLPIQHQ   83 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCE----EEEEEETTTTEEEEEEEEECCHH
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcc----cccccccCCCeEEEEEEEEEcHH
Confidence            3455544444444  7899999999999977   33 7999999887654321    00111122334445578999999


Q ss_pred             CCCCCeEEEEEEecCCCce
Q psy1672         327 QESDSGRFYCVAENRAGIA  345 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N~~G~~  345 (600)
                      +..|.|.|+|.|.|..+..
T Consensus        84 ~~~D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           84 DWMSGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             HHHTTCCEEEEEEETTCSS
T ss_pred             HcCCCCeEEEEEECCcCCC
Confidence            9999999999999998754

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.07  E-value=3.7e-06  Score=80.42  Aligned_cols=91  Identities=22%  Similarity=0.309  Sum_probs=64.3

Q ss_pred             ccccccccccccceeeeEeecCCC-CeeEEEEcCeecc-----CCcccC--ccceEE----------EeeCCceeeeeeE
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPP-AAISWYWNGRLLL-----NNTAFS--SYQRIF----------VIEQGEYERKSSL  321 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~-p~i~W~~~g~~l~-----~~~~~~--~~~~~~----------~~~~g~~~~~s~L  321 (600)
                      .+..+.+..|+.+.|.|.+.+.+. +.+.|+++++...     ......  ...++.          +..+      +.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~------~~L   79 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ------GRL   79 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT------CCE
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC------ceE
Confidence            456778899999999999999885 8999998553211     000000  011111          2222      359


Q ss_pred             EEecCCCCCCeEEEEEEecCC-CceeEEEEEEEEEc
Q psy1672         322 VLTNAQESDSGRFYCVAENRA-GIADANFTLQVTYR  356 (600)
Q Consensus       322 ~I~~v~~~d~G~Y~C~a~N~~-G~~~~~v~L~V~~~  356 (600)
                      .|.+++..|.|.|+|.|.|.. |..+..+.|.|...
T Consensus        80 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~  115 (231)
T 2pet_A           80 VLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK  115 (231)
T ss_dssp             EESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBC
T ss_pred             EEcccCcccCceEEEEEEecCCCceEEEEEEEEEec
Confidence            999999999999999999997 77788888888654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=98.06  E-value=1.2e-05  Score=92.36  Aligned_cols=98  Identities=24%  Similarity=0.427  Sum_probs=72.4

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+........+..|+.+.|.|.+.|.|.+.+.|+++|..+.....+..  ......++  ...+.|.|.+++..|.|.|
T Consensus       430 p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~--~~~~~~~~--~~~~~L~i~~v~~~d~G~Y  505 (816)
T 3dmk_A          430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQV--GQYVTVNG--DVVSYLNITSVHANDGGLY  505 (816)
T ss_dssp             CEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEE--EEEECTTS--CEEEEEEESSCCTTTCEEE
T ss_pred             CceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCccc--ccEEecCC--CcEEEEEEeeccccCCEEE
Confidence            3333334455678899999999999999999999999988765432110  11112222  2345799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEEEc
Q psy1672         335 YCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      +|.|.|..|.....+.|.|...
T Consensus       506 ~C~a~n~~g~~~~~~~l~V~~~  527 (816)
T 3dmk_A          506 KCIAKSKVGVAEHSAKLNVYGL  527 (816)
T ss_dssp             EEEEEETTEEEEEEEEEEECSS
T ss_pred             EEEEEECCCeEEEEEEEEEecC
Confidence            9999999999988888888543

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=98.06  E-value=5.1e-06  Score=76.51  Aligned_cols=85  Identities=20%  Similarity=0.210  Sum_probs=59.9

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcc-----cC-ccceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTA-----FS-SYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~-----~~-~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      .+.+..|+.++|.|.+.+ |.+.|.|++++..+.....     ++ ...|+.+..     ..++|.|.+++..|+|.|+|
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~-----~~~sL~I~~v~~~DsG~Y~C   77 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDT-----VSGSLTIYNLTSSDEDEYEM   77 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECT-----TTCCEEECSCCGGGCEEEEE
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeC-----CCCeEEECCCChhhCceEEE
Confidence            456788999999999854 8889999997764321100     00 011232211     12489999999999999999


Q ss_pred             EEecCCCceeEEEEEEEEE
Q psy1672         337 VAENRAGIADANFTLQVTY  355 (600)
Q Consensus       337 ~a~N~~G~~~~~v~L~V~~  355 (600)
                      .|.|..|  ...+.|.|..
T Consensus        78 ~~~n~~~--~~~~~L~V~~   94 (171)
T 1ccz_A           78 ESPNITD--TMKFFLYVLE   94 (171)
T ss_dssp             ECTTCCS--CEEEEEEEEC
T ss_pred             EEeCCCC--cEEEEEEEEC
Confidence            9999988  6677777754

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=98.06  E-value=3.1e-06  Score=81.31  Aligned_cols=87  Identities=13%  Similarity=0.118  Sum_probs=58.8

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeee--eEEEecCCCCCCe
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS--SLVLTNAQESDSG  332 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s--~L~I~~v~~~d~G  332 (600)
                      |.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+++|..+....     .+.  ...   ...+  .|.|.+++.+|+|
T Consensus        10 P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~-----~~~--~~~---~~~~~~~L~I~~v~~~D~G   77 (218)
T 1uct_A           10 PFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREI-----GRR--LKF---WNETDPEFVIDHMDANKAG   77 (218)
T ss_dssp             CCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEEC-----SEE--CC-------CCCEEEECSCCGGGCE
T ss_pred             CEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccc-----ccc--CCC---CcceeeEEEEcccccccCE
Confidence            44444444 46789999999999987 678999999876543211     000  000   1123  7999999999999


Q ss_pred             EEEEEEecCCCcee--EEEEEEE
Q psy1672         333 RFYCVAENRAGIAD--ANFTLQV  353 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~--~~v~L~V  353 (600)
                      .|+|.|.|..|...  ..+.|.|
T Consensus        78 ~Y~C~a~n~~~~~~~s~~~~l~V  100 (218)
T 1uct_A           78 RYQCQYRIGHYRFRYSDTLELVV  100 (218)
T ss_dssp             EEEEEEEETTTEEEECCCEEEEE
T ss_pred             EEEEEEEcCCCceeecCCEEEEE
Confidence            99999999876433  3345555

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=98.06  E-value=2.1e-05  Score=79.05  Aligned_cols=70  Identities=19%  Similarity=0.354  Sum_probs=55.9

Q ss_pred             ccccccccceeeeEe------ecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEE
Q psy1672         264 VEAVSSENATVVCRV------DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCV  337 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v------~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~  337 (600)
                      ..+..|+.+.|.|.+      .|.|.+.+.|+++++.+....     .+. ...+      +.|.|.+++..|.|.|+|.
T Consensus       113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~-----~~~-~~~~------~~L~i~~v~~~d~G~Y~C~  180 (315)
T 1itb_B          113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN-----IHF-SGVK------DRLIVMNVAEKHRGNYTCH  180 (315)
T ss_dssp             EEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCS-----SSE-EEET------TEEEESSCCGGGCEEEEEE
T ss_pred             eEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCcc-----ceE-eecC------ceEEEEeceehhCcEEEEE
Confidence            356789999999998      799999999999998875422     111 1122      3799999999999999999


Q ss_pred             Ee-cCCCce
Q psy1672         338 AE-NRAGIA  345 (600)
Q Consensus       338 a~-N~~G~~  345 (600)
                      |. |..|..
T Consensus       181 a~~n~~g~~  189 (315)
T 1itb_B          181 ASYTYLGKQ  189 (315)
T ss_dssp             EEEEETTEE
T ss_pred             EEcCCCCcE
Confidence            99 888876

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.06  E-value=5e-06  Score=77.60  Aligned_cols=88  Identities=11%  Similarity=0.109  Sum_probs=63.3

Q ss_pred             ccccccccccceeeeEee--cCCCCeeEEEE--cCeeccCCc----ccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         262 RYVEAVSSENATVVCRVD--SIPPAAISWYW--NGRLLLNNT----AFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~--g~P~p~i~W~~--~g~~l~~~~----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      ..+.+..|+.++|.|...  +.+.+.|.|++  ++..+....    .+....|..+..+|      +|.|.+++..|+|.
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng------sL~I~~v~~~DsG~   80 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG------TLKIKHLKTDDQDI   80 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS------CEEECSCCGGGCEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC------CEEECCCChhhCEE
Confidence            456678899999999553  35567999999  877653111    01123455555554      89999999999999


Q ss_pred             EEEEEecCCCcee--EEEEEEEEE
Q psy1672         334 FYCVAENRAGIAD--ANFTLQVTY  355 (600)
Q Consensus       334 Y~C~a~N~~G~~~--~~v~L~V~~  355 (600)
                      |+|.|.|..|...  +.+.|.|..
T Consensus        81 Y~c~~~n~~g~~~~~~~~~L~V~~  104 (182)
T 1hnf_A           81 YKVSIYDTKGKNVLEKIFDLKIQE  104 (182)
T ss_dssp             EEEEEEETTSCEEEEEEEEEEEEC
T ss_pred             EEEEEEeCCCceeEEEEEEEEEcC
Confidence            9999999998764  456677753

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=98.06  E-value=6.5e-06  Score=83.64  Aligned_cols=100  Identities=20%  Similarity=0.386  Sum_probs=65.3

Q ss_pred             cccccccccccccccceeeeEeecC-CCCeeEEEEcCeeccCC---cccCccceEEEeeCCce--eeeeeEEEecCCCCC
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSI-PPAAISWYWNGRLLLNN---TAFSSYQRIFVIEQGEY--ERKSSLVLTNAQESD  330 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~~g~~l~~~---~~~~~~~~~~~~~~g~~--~~~s~L~I~~v~~~d  330 (600)
                      +...+..+.+.+|+.+.|.|.+.+. |.+.|.|++++......   .......++....+...  ...+.|.|.+++.+|
T Consensus         6 v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D   85 (327)
T 2wng_A            6 VIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPAD   85 (327)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGG
T ss_pred             EEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcccc
Confidence            3444667889999999999999987 88999999987532100   00001123333222110  234579999999999


Q ss_pred             CeEEEEEEecCCCcee-----EEEEEEEEEc
Q psy1672         331 SGRFYCVAENRAGIAD-----ANFTLQVTYR  356 (600)
Q Consensus       331 ~G~Y~C~a~N~~G~~~-----~~v~L~V~~~  356 (600)
                      .|.|+|.|.|..|...     ..+.|.|...
T Consensus        86 ~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~  116 (327)
T 2wng_A           86 AGTYYCVKFRKGSPDTEFKSGAGTELSVRAK  116 (327)
T ss_dssp             CEEEEEEEEESSTTCEEEEECCCEEEEEEBC
T ss_pred             CeEEEEEeecCCCcceeEeecCcEEEEEEec
Confidence            9999999999877522     2345666443

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=98.05  E-value=2.6e-06  Score=81.26  Aligned_cols=80  Identities=16%  Similarity=0.268  Sum_probs=55.0

Q ss_pred             ccccccccceeeeEeec-CCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         264 VEAVSSENATVVCRVDS-IPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g-~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..+..|+.++|.|.+.| .|.| .|.|++++..+....    ....  ...+.+...+.|.|.... .|.|.|+|.|.|.
T Consensus       134 ~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~----~~~~--~~~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~  206 (219)
T 1c1e_H          134 SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT----FPAV--LQSDLYTLSSSVTVPSSP-RPSETVTCNVAHP  206 (219)
T ss_dssp             SSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE----CCCE--ESSSCEEEEEEEEEESSS-TTTSCCEEEEEEG
T ss_pred             cccccCCeEEEEEEcccccCCCeEEEEEeCCcccceEe----cCCc--ccCCeEEEEEEEEEeccc-CCCCEEEEEEEeC
Confidence            34568999999999998 8988 999999887543111    1111  122444455678884444 4669999999999


Q ss_pred             CCceeEEEE
Q psy1672         342 AGIADANFT  350 (600)
Q Consensus       342 ~G~~~~~v~  350 (600)
                      .|.......
T Consensus       207 ~~~~~~~~~  215 (219)
T 1c1e_H          207 ASSTKVDKK  215 (219)
T ss_dssp             GGTEEEEEE
T ss_pred             CCCccEEEe
Confidence            887654443

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=98.05  E-value=8.8e-06  Score=70.29  Aligned_cols=82  Identities=21%  Similarity=0.321  Sum_probs=55.6

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEEc--Cee---cc-CCcc--cCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRL---LL-NNTA--FSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~---l~-~~~~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ...+..+.+.+|+.++|.|.+.+.+.+.+.|++.  +..   +. ....  .....|+.+...   .....|+|.+++.+
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~---~~~~~L~I~~v~~~   81 (120)
T 1mqk_L            5 TQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGS---GTQFSLKINSLLPE   81 (120)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE---TTEEEEEESSCCGG
T ss_pred             EecCCeEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEecc---CCEEEEEECCCCHH
Confidence            3345678889999999999999888889999994  221   11 0000  001223333221   12457999999999


Q ss_pred             CCeEEEEEEecCC
Q psy1672         330 DSGRFYCVAENRA  342 (600)
Q Consensus       330 d~G~Y~C~a~N~~  342 (600)
                      |+|.|.|.+.|..
T Consensus        82 DsG~Y~C~~~~~~   94 (120)
T 1mqk_L           82 DFGSYYCQHHYGT   94 (120)
T ss_dssp             GCEEEEEEECSSS
T ss_pred             HCEEEEEEEEeCC
Confidence            9999999999863

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=98.04  E-value=7.1e-06  Score=77.44  Aligned_cols=85  Identities=19%  Similarity=0.167  Sum_probs=58.0

Q ss_pred             cccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         263 YVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ......++.+.+.|.+. +.|++.+.|++++.......      ......++.....+.|.|.++...|.|.|+|.|+|.
T Consensus       130 ~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~------~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~  203 (225)
T 4fmk_A          130 EVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDT------QEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHE  203 (225)
T ss_dssp             CBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEE------EEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECT
T ss_pred             ceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCc------ceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcC
Confidence            34445566666766554 78888999998765443211      122233455555678999999999999999999999


Q ss_pred             CCceeEEEEEEE
Q psy1672         342 AGIADANFTLQV  353 (600)
Q Consensus       342 ~G~~~~~v~L~V  353 (600)
                      .|.......+.+
T Consensus       204 ~~~~~~~~~v~l  215 (225)
T 4fmk_A          204 SFEEPILLPVTL  215 (225)
T ss_dssp             TCSSCEEEEEEC
T ss_pred             CCCeEEEEEEEE
Confidence            987755544433

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.04  E-value=1e-05  Score=78.57  Aligned_cols=88  Identities=20%  Similarity=0.335  Sum_probs=54.3

Q ss_pred             ccccccceeeeEeec-CCCC-eeEEEEcCeeccCCcccCcc---ceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         266 AVSSENATVVCRVDS-IPPA-AISWYWNGRLLLNNTAFSSY---QRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       266 v~~G~~v~L~C~v~g-~P~p-~i~W~~~g~~l~~~~~~~~~---~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +..|+.+.|.|.+.| .|.+ .|.|+++++.+.........   .......++.+...+.|.|......|.|.|+|.|.|
T Consensus       130 ~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n  209 (248)
T 3pv7_A          130 GMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRH  209 (248)
T ss_dssp             ------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEEC
T ss_pred             cccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEEC
Confidence            446788899999998 7888 99999988655422111000   112223345555667899999999999999999999


Q ss_pred             CCCce--eEEEEEEE
Q psy1672         341 RAGIA--DANFTLQV  353 (600)
Q Consensus       341 ~~G~~--~~~v~L~V  353 (600)
                      ..+..  +..+.|.|
T Consensus       210 ~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          210 ASLHTPLRSNFTLTA  224 (248)
T ss_dssp             TTCSSCEEEEECC--
T ss_pred             CCCCCCcEEEEEEEE
Confidence            99874  44555555

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.03  E-value=1.8e-06  Score=89.80  Aligned_cols=132  Identities=17%  Similarity=0.174  Sum_probs=77.9

Q ss_pred             CCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCcccc--CCCCCCCEEEccC--CC------CCccCccc
Q psy1672          73 GLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTF--QSVRFLRDLNLAR--NP------ISKIEKGA  142 (600)
Q Consensus        73 ~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f--~~l~~L~~L~Ls~--N~------i~~l~~~~  142 (600)
                      .+++|+.|.|++|.-..+.+  +. +++|++|+|..+.+..-.-..+  ..+++|+.|+|+.  |.      +..+.. .
T Consensus       170 ~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~  245 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-L  245 (362)
T ss_dssp             TCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-G
T ss_pred             cCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-H
Confidence            57788888888773123322  33 6788888888777653211112  2567788888753  11      111111 1


Q ss_pred             c--cCCCCcceeeCCCCcCcccChhhh---cCCCCCCEEEcCCCcCCCCCc----ccccccccccEEEccCCcCc
Q psy1672         143 F--QFVPGLVKLDMSESRLEHISPEAF---TGAKSLESIKLNGNRLSHFPV----RSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       143 ~--~~l~~L~~L~Ls~n~l~~i~~~~~---~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~l~~N~~~  208 (600)
                      +  ..+++|+.|+|++|.+.......+   ..+++|+.|+|+.|.|.....    ..+..+++|+.|++..|.+.
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            2  246788888888887764222222   246788888888887775321    22345677888888777643

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.03  E-value=9.4e-06  Score=71.57  Aligned_cols=101  Identities=22%  Similarity=0.452  Sum_probs=61.8

Q ss_pred             ccccccccccccccccceeeeEeecC-CCCeeEEEEcCe----eccCCcccCccceEEEeeC--CceeeeeeEEEecCCC
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSI-PPAAISWYWNGR----LLLNNTAFSSYQRIFVIEQ--GEYERKSSLVLTNAQE  328 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~~g~----~l~~~~~~~~~~~~~~~~~--g~~~~~s~L~I~~v~~  328 (600)
                      .+...+..+.+.+|+.++|.|.+.+. +.+.+.|++.+.    .+.... .....++....+  ........|+|.+++.
T Consensus        10 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~-~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   88 (136)
T 2d9c_A           10 QVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQK-EGHFPRVTTVSELTKRNNLDFSISISNITP   88 (136)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESS-SCCCSSBCCSSCSSSSSCCBCCEEESSCCT
T ss_pred             EEEecCcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcC-CCcccceeeeeeeccCCCCEEEEEECCCCH
Confidence            34444567889999999999999865 567899999642    111000 000011111100  0001246899999999


Q ss_pred             CCCeEEEEEEecCCCc--ee----EEEEEEEEEcc
Q psy1672         329 SDSGRFYCVAENRAGI--AD----ANFTLQVTYRG  357 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G~--~~----~~v~L~V~~~~  357 (600)
                      +|+|.|.|.+.|..+.  ..    ..+.|.|...+
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~  123 (136)
T 2d9c_A           89 ADAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKP  123 (136)
T ss_dssp             TTCEEEEEEEEECCSSSCEEEEECCCEEEEEECCC
T ss_pred             HHCEEEEEEEEeCCCCcccceeeCCCeEEEEEeCC
Confidence            9999999999986541  11    34667775543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.03  E-value=5.5e-06  Score=78.74  Aligned_cols=78  Identities=19%  Similarity=0.290  Sum_probs=55.1

Q ss_pred             cccccceeeeEeec-CCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         267 VSSENATVVCRVDS-IPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       267 ~~G~~v~L~C~v~g-~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      ..|+.++|.|.+.| .|.+ .|.|+++|+.+......  ........++.+...+.|.|..+...|.|.|+|.|.|....
T Consensus       127 ~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~--~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          127 LKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE--SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             HHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE--EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             ccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeE--ecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence            46889999999997 4554 89999999877543100  00001112344445668999999999999999999998865


Q ss_pred             ee
Q psy1672         345 AD  346 (600)
Q Consensus       345 ~~  346 (600)
                      ..
T Consensus       205 ~~  206 (216)
T 2xzc_L          205 SP  206 (216)
T ss_dssp             SC
T ss_pred             Cc
Confidence            44

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.03  E-value=8e-06  Score=68.81  Aligned_cols=81  Identities=16%  Similarity=0.329  Sum_probs=54.9

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEEcC--ee---cc-CCcc--cCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG--RL---LL-NNTA--FSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g--~~---l~-~~~~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ...+..+.+.+|+.++|.|.+.+.+.+.+.|++..  ..   +. ....  .....|+.+...+   ....|.|.+++.+
T Consensus         5 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~---~~~~L~I~~v~~~   81 (107)
T 1i8k_A            5 TQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTG---TDFVFTIENTLSE   81 (107)
T ss_dssp             EEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET---TEEEEEESSCCGG
T ss_pred             EeCCCeEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccC---CEEEEEECCCCHH
Confidence            33456788899999999999998878899999842  21   11 0000  0011233332211   2357999999999


Q ss_pred             CCeEEEEEEecC
Q psy1672         330 DSGRFYCVAENR  341 (600)
Q Consensus       330 d~G~Y~C~a~N~  341 (600)
                      |+|.|.|.+.|.
T Consensus        82 DsG~Y~C~~~~~   93 (107)
T 1i8k_A           82 DVGDYYCLQSFN   93 (107)
T ss_dssp             GCEEEEEEECSS
T ss_pred             HCEEEEEEEeeC
Confidence            999999999986

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=98.02  E-value=6.7e-06  Score=76.31  Aligned_cols=67  Identities=15%  Similarity=0.172  Sum_probs=51.5

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...+..|+.++|.|.+.+.| +.+.|+++|..+....      .       .....+.|.|.+++.+|.|.|+|.|.|..
T Consensus       102 ~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~------~-------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~  167 (184)
T 2gi7_A          102 GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKN------P-------ERWYRASFPIITVTAAHSGTYRCYSFSSR  167 (184)
T ss_dssp             CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCC------C-------CEEEEESSSEEEETTCCSEEEEEEEECTT
T ss_pred             CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCccee------c-------CCCceEEEEEccCCccCCeEEEEEEEeCC
Confidence            44677899999999987654 6999999987665311      0       01123578999999999999999999986


Q ss_pred             C
Q psy1672         343 G  343 (600)
Q Consensus       343 G  343 (600)
                      +
T Consensus       168 ~  168 (184)
T 2gi7_A          168 D  168 (184)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.02  E-value=1.2e-05  Score=78.11  Aligned_cols=94  Identities=17%  Similarity=0.267  Sum_probs=61.2

Q ss_pred             cccccccccccccccceeeeEeecCCCCeeEEEE--cCeeccCC------cccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLNN------TAFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~~~------~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      +...+..+.+.+|+.++|.|.+.+.|.+.+.|++  ++..+...      .......++.+...+   ....|.|.+++.
T Consensus       138 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~L~I~~v~~  214 (247)
T 2ghw_B          138 LTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSG---TDFTLTISRLEP  214 (247)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSS---SEEEEEECSCCG
T ss_pred             EEccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCC---CeEEEEECcCCH
Confidence            3334556678899999999999999999999999  55433100      000011233332221   235799999999


Q ss_pred             CCCeEEEEEEecCCCce-eEEEEEEE
Q psy1672         329 SDSGRFYCVAENRAGIA-DANFTLQV  353 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G~~-~~~v~L~V  353 (600)
                      +|+|.|+|.|.|..+.. .....|.|
T Consensus       215 ~D~G~Y~C~a~~~~~~~~g~~t~l~V  240 (247)
T 2ghw_B          215 EDFAVYYCQQRSNWPPTFGQGTKVEV  240 (247)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             HHCEEEEEEEccCCCceEcCCEEEEE
Confidence            99999999999864332 22345555

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.02  E-value=8.3e-06  Score=70.37  Aligned_cols=82  Identities=17%  Similarity=0.364  Sum_probs=55.5

Q ss_pred             cccccccccccccccceeeeEeecCCCCeeEEEEcC--ee---cc-CCccc--CccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG--RL---LL-NNTAF--SSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g--~~---l~-~~~~~--~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      +...+..+.+.+|+.++|.|.+.+.+.+.+.|++..  ..   +. .....  ....++.+...   .....|.|.+++.
T Consensus         6 v~q~p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~L~I~~v~~   82 (119)
T 2e27_L            6 MTQSPSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGS---GRDYSFSISNLEP   82 (119)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE---TTEEEEEECSCCG
T ss_pred             eEecCCeEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcc---CCEEEEEECCCCh
Confidence            334466788899999999999998888899999842  21   11 00000  01123333211   1245799999999


Q ss_pred             CCCeEEEEEEecC
Q psy1672         329 SDSGRFYCVAENR  341 (600)
Q Consensus       329 ~d~G~Y~C~a~N~  341 (600)
                      +|+|.|.|.+.|.
T Consensus        83 ~DsG~Y~C~~~~~   95 (119)
T 2e27_L           83 EDAATYYCLQYDN   95 (119)
T ss_dssp             GGCEEEEEEECGG
T ss_pred             HHCEEEEEEEccC
Confidence            9999999999985

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.02  E-value=4.3e-06  Score=86.87  Aligned_cols=129  Identities=20%  Similarity=0.194  Sum_probs=60.7

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCcccc--CCCCCccEEEccC--CC------CCCCCcccc-
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGAL--DGLTNLIEIDLSD--NL------LTSIPSLTF-  119 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f--~~l~~L~~L~Ls~--N~------l~~l~~~~f-  119 (600)
                      |+.|+|++|.-..++.  +   .+++|+.|+|..|.+..-.-..+  ..+++|++|+|+.  |.      +..+.. .+ 
T Consensus       174 L~~L~L~g~~~l~l~~--~---~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~  247 (362)
T 2ra8_A          174 LNNLKIKGTNNLSIGK--K---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFS  247 (362)
T ss_dssp             CCEEEEECCBTCBCCS--C---BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSC
T ss_pred             CcEEEEeCCCCceecc--c---cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHh
Confidence            6666666652112222  1   25566666666665533211122  2456666666642  11      111111 11 


Q ss_pred             -CCCCCCCEEEccCCCCCccCcccc---cCCCCcceeeCCCCcCcccChhh----hcCCCCCCEEEcCCCcCCC
Q psy1672         120 -QSVRFLRDLNLARNPISKIEKGAF---QFVPGLVKLDMSESRLEHISPEA----FTGAKSLESIKLNGNRLSH  185 (600)
Q Consensus       120 -~~l~~L~~L~Ls~N~i~~l~~~~~---~~l~~L~~L~Ls~n~l~~i~~~~----~~~l~~L~~L~Ls~N~l~~  185 (600)
                       ..+++|+.|+|.+|.+.......+   ..+++|+.|+|+.|.|.......    +..+++|+.|+|++|.|+.
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence             134566666666666543111111   13556666666666665532222    2334666666666665543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=98.01  E-value=8.6e-06  Score=84.46  Aligned_cols=81  Identities=19%  Similarity=0.210  Sum_probs=65.2

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +....+..|+.+.|.|.+.+.|.+.+.|++++..+....          .     ...+.|.|.+++..|.|.|+|.|.|
T Consensus       214 ~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~----------~-----~~~~~L~i~~~~~~d~G~Y~C~a~n  278 (382)
T 1cs6_A          214 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW----------L-----SSEPLLHIQNVDFEDEGTYECEAEN  278 (382)
T ss_dssp             CSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC----------S-----BSSSEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccEE----------e-----cCCcEEEEccCChhhCEEEEEEEEc
Confidence            345667889999999999999999999999776543210          0     1124799999999999999999999


Q ss_pred             CCCceeEEEEEEEEEc
Q psy1672         341 RAGIADANFTLQVTYR  356 (600)
Q Consensus       341 ~~G~~~~~v~L~V~~~  356 (600)
                      ..|.....+.|.|...
T Consensus       279 ~~g~~~~~~~l~V~~~  294 (382)
T 1cs6_A          279 IKGRDTYQGRIIIHAQ  294 (382)
T ss_dssp             TTEEEEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEEecC
Confidence            9999888888888654

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.01  E-value=1.2e-05  Score=67.88  Aligned_cols=87  Identities=23%  Similarity=0.387  Sum_probs=57.8

Q ss_pred             ccccccccccceeeeEe-ecCCCCeeEEEEc-CeeccC----Cc--cc-Cc-cceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         262 RYVEAVSSENATVVCRV-DSIPPAAISWYWN-GRLLLN----NT--AF-SS-YQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v-~g~P~p~i~W~~~-g~~l~~----~~--~~-~~-~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      ..+.+..|+.++|.|.+ .+.+.+.+.|++. ++.+..    ..  .. .. ..|+.+..     ....|+|.+++.+|+
T Consensus        11 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~-----~~~sL~I~~v~~~Ds   85 (110)
T 2ptt_A           11 PDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEE-----NNGALHISNVRKEDK   85 (110)
T ss_dssp             CSEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECT-----TTCCEEESSCCGGGC
T ss_pred             CCEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeC-----CCccEEECCCCcccC
Confidence            45678899999999998 5677789999993 221110    00  00 00 12333321     235799999999999


Q ss_pred             eEEEEEEecCCCceeEEEEEEEE
Q psy1672         332 GRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       332 G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |.|.|.+.+.. .....+.|.|.
T Consensus        86 G~Y~C~v~~~~-~~~~~~~L~V~  107 (110)
T 2ptt_A           86 GTYYMRVLRET-ENELKITLEVF  107 (110)
T ss_dssp             EEEEEEEESSS-BCCEEEEEEEE
T ss_pred             eEEEEEEEcCC-CcEEEEEEEEE
Confidence            99999999876 34456666664

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.01  E-value=1.1e-05  Score=76.22  Aligned_cols=89  Identities=17%  Similarity=0.127  Sum_probs=59.8

Q ss_pred             ccccccccceeeeEeecCCC---CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         264 VEAVSSENATVVCRVDSIPP---AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~---p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      ..+..|+.++|.|.+.+.++   ++|.|+++++.+........ .    .........+.|.|......|.|.|+|.|+|
T Consensus       101 ~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~-~----~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n  175 (202)
T 1vca_A          101 GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLED-A----DRKSLETKSLEVTFTPVIEDIGKVLVCRAKL  175 (202)
T ss_dssp             SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSC-C----SSCCCEEEEEEEEECCCGGGTTCEEEEEEEE
T ss_pred             eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccc-c----CcCcceEEEEEEEEEeeeccCCCeEEEEEEc
Confidence            55788999999999997643   37899999987653211000 0    0000122344677888888889999999999


Q ss_pred             CCCc-------eeEEEEEEEEEcc
Q psy1672         341 RAGI-------ADANFTLQVTYRG  357 (600)
Q Consensus       341 ~~G~-------~~~~v~L~V~~~~  357 (600)
                      ..|.       .+..+.|.|.+.|
T Consensus       176 ~~~~~~~~~~~~~~~~~L~V~y~P  199 (202)
T 1vca_A          176 HIDEMDSVPTVRQAVKELQVYISP  199 (202)
T ss_dssp             CSCCCTTSCSEEEEEEECCEECCC
T ss_pred             cccCCCCcceeEeeEEEEEEecCC
Confidence            9876       3456777776543

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=98.01  E-value=5.7e-06  Score=77.02  Aligned_cols=78  Identities=18%  Similarity=0.340  Sum_probs=58.9

Q ss_pred             cccccccccccceeeeE-eecCCC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         261 SRYVEAVSSENATVVCR-VDSIPP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~-v~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      +..+.+.+|+.+.|.|. +.+.|. +.+.|++++..+....    ..+......     .+.|.|.+++..|.|.|+|.+
T Consensus        15 ~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~----~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~~   85 (201)
T 3s97_C           15 RPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITM----DKRRFVSQT-----NGNLYIANVEASDKGNYSCFV   85 (201)
T ss_dssp             CCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCC----SSSEEECTT-----TCCEEESSCCGGGCEEEEEEE
T ss_pred             CceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeee----CCCeEEEcC-----CCeEEECcCCcccCeEEEEEE
Confidence            45677889999999999 888998 9999999887654211    112222222     247999999999999999999


Q ss_pred             ecCCCceeE
Q psy1672         339 ENRAGIADA  347 (600)
Q Consensus       339 ~N~~G~~~~  347 (600)
                      .|..+....
T Consensus        86 ~~~~~~~~~   94 (201)
T 3s97_C           86 SSPSITKSV   94 (201)
T ss_dssp             EEGGGTEEE
T ss_pred             EecCCCcch
Confidence            998766543

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=98.00  E-value=1e-05  Score=83.49  Aligned_cols=93  Identities=13%  Similarity=0.039  Sum_probs=65.3

Q ss_pred             ccccccccccceeeeEeec-----CCCCeeEEEEcCeeccCCcc-cC-ccceEEEeeCC--c-----eeeeeeEEEecCC
Q psy1672         262 RYVEAVSSENATVVCRVDS-----IPPAAISWYWNGRLLLNNTA-FS-SYQRIFVIEQG--E-----YERKSSLVLTNAQ  327 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g-----~P~p~i~W~~~g~~l~~~~~-~~-~~~~~~~~~~g--~-----~~~~s~L~I~~v~  327 (600)
                      ....+.+|+.+.|.|.+.+     .|.|.+.|+++|..+..... +. ...+..+....  .     ......|.|.+++
T Consensus       184 ~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  263 (363)
T 1wio_A          184 SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL  263 (363)
T ss_dssp             EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBC
T ss_pred             CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCC
Confidence            4456778999999998877     78899999999876654100 00 01122221100  0     0012479999999


Q ss_pred             CCCCeEEEEEEecC--CCceeEEEEEEEE
Q psy1672         328 ESDSGRFYCVAENR--AGIADANFTLQVT  354 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~--~G~~~~~v~L~V~  354 (600)
                      ..|.|.|+|.|.|.  .|..+..+.|.|.
T Consensus       264 ~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~  292 (363)
T 1wio_A          264 PQYAGSGNLTLALEAKTGKLHQEVNLVVM  292 (363)
T ss_dssp             GGGCEEEEEEECBTTTTCCEEEEEEEEEE
T ss_pred             cCcCcEEEEEEEEhhhcCeEEEEEeEEEE
Confidence            99999999999999  9998888888885

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.00  E-value=9e-06  Score=71.21  Aligned_cols=99  Identities=21%  Similarity=0.274  Sum_probs=64.6

Q ss_pred             cccccccccccccceeeeEeecCC-CCeeEEEEc--Cee---c-cCCc---ccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIP-PAAISWYWN--GRL---L-LNNT---AFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P-~p~i~W~~~--g~~---l-~~~~---~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..+..+.+.+|+.++|.|.+.+.. ...+.|++.  ++.   + ....   ......|+.+..+. ......|+|.+++.
T Consensus         6 Q~P~~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~-~~~~~sL~I~~~~~   84 (129)
T 3rrq_A            6 FSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLP-NGRDFHMSVVRARR   84 (129)
T ss_dssp             EECSEEEEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECT-TSSEEEEEESSCCG
T ss_pred             ECCCEEEEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcC-CCCEEEEEECCCCh
Confidence            345678889999999999998654 467999983  221   1 1000   00112344443221 12346899999999


Q ss_pred             CCCeEEEEEEecCCCce----eEEEEEEEEEccC
Q psy1672         329 SDSGRFYCVAENRAGIA----DANFTLQVTYRGV  358 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G~~----~~~v~L~V~~~~~  358 (600)
                      +|+|.|.|.+.|..+..    ...+.|.|+.++.
T Consensus        85 ~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~~  118 (129)
T 3rrq_A           85 NDSGTYLCGAISLAPKLQIKESLRAELRVTERRA  118 (129)
T ss_dssp             GGCEEEEEEEEECGGGCEEEECCCEEEEEECCCC
T ss_pred             hHCEEEEEEEEecCCCceeeEeceEEEEEecCcc
Confidence            99999999999987765    4457888876543

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.00  E-value=1e-05  Score=76.52  Aligned_cols=90  Identities=16%  Similarity=0.286  Sum_probs=59.9

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEc--Ceecc---C-Cc--ccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLL---N-NT--AFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~---~-~~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      +..+.+..|+.++|.|.+.+.|.+.|.|+++  +..+.   . ..  ......++.+...+   ....|.|.+++.+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~L~I~~v~~~D~G   83 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSG---TDFTLTIDPVEADDTA   83 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET---TEEEEEESSCCGGGCE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecC---CEEEEEECCCCHHHCe
Confidence            6677889999999999999998899999984  22210   0 00  00001233322211   2348999999999999


Q ss_pred             EEEEEEecCCCcee-EEEEEEE
Q psy1672         333 RFYCVAENRAGIAD-ANFTLQV  353 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~-~~v~L~V  353 (600)
                      .|+|.|.|..+... ..+.|.|
T Consensus        84 ~Y~C~~~~~~~~~~~~~~~l~V  105 (210)
T 1lk3_L           84 IYFCQQSWNGPLTFGAGTKLEL  105 (210)
T ss_dssp             EEEEEECSSSSCEECCCEEEEE
T ss_pred             EEEEEEEcCCCceeCCCEEEEE
Confidence            99999999877532 2234555

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.00  E-value=3.8e-06  Score=79.52  Aligned_cols=78  Identities=15%  Similarity=0.262  Sum_probs=56.5

Q ss_pred             ccccccccceeeeEeecC-CCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         264 VEAVSSENATVVCRVDSI-PPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..+..|+.++|.|.+.|. |.| .+.|++++..+....    ....  ..++.+...+.|.|.++...| |.|+|.|.|.
T Consensus       128 ~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~----~~~~--~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~  200 (210)
T 3d9a_H          128 SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT----FPAV--LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHP  200 (210)
T ss_dssp             TSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE----CCCE--EETTEEEEEEEEEEEGGGTTT-SCCEEEEEEG
T ss_pred             cccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEE----cCCc--cCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeC
Confidence            445689999999999986 888 999999886542111    1111  123444456789999988867 9999999999


Q ss_pred             CCceeEE
Q psy1672         342 AGIADAN  348 (600)
Q Consensus       342 ~G~~~~~  348 (600)
                      .|.....
T Consensus       201 ~~~~~~~  207 (210)
T 3d9a_H          201 ASSTKVD  207 (210)
T ss_dssp             GGTEEEE
T ss_pred             CCCcccc
Confidence            9886543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.00  E-value=1.4e-05  Score=77.72  Aligned_cols=96  Identities=19%  Similarity=0.305  Sum_probs=63.2

Q ss_pred             cccccccccccceeeeEeecCCCCe-----eEEEEcCeeccCCc-ccC-ccceEEEeeCCc-------eeeeeeEEEecC
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAA-----ISWYWNGRLLLNNT-AFS-SYQRIFVIEQGE-------YERKSSLVLTNA  326 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~-----i~W~~~g~~l~~~~-~~~-~~~~~~~~~~g~-------~~~~s~L~I~~v  326 (600)
                      +..+.+..|+.++|.|.+.+.|.+.     |.|++++....... .+. .......+..+.       ......|.|.++
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            4456788999999999999888776     99999532211000 000 000000111110       012346999999


Q ss_pred             CCCCCeEEEEEEecCCCceeEEEEEEEEEc
Q psy1672         327 QESDSGRFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      +..|.|.|+|.+.|..|.....+.|.|...
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~  119 (248)
T 3pv7_A           90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVAS  119 (248)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             CHHHCeEEEEEEEeCCccceeEEEEEEecC
Confidence            999999999999999988888888888653

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.00  E-value=1.1e-05  Score=75.60  Aligned_cols=62  Identities=18%  Similarity=0.331  Sum_probs=46.2

Q ss_pred             ccc-cceeeeEeecC-CCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCC-CCCeEEEEEEecCCCc
Q psy1672         268 SSE-NATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE-SDSGRFYCVAENRAGI  344 (600)
Q Consensus       268 ~G~-~v~L~C~v~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~-~d~G~Y~C~a~N~~G~  344 (600)
                      .|. .++|.|.+.+. |.+.|.|+++|+.+...                    +.|.|..... .|.|.|+|+|.|.+|.
T Consensus       122 ~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~--------------------~~l~i~~~~~~~d~G~Y~C~a~N~~g~  181 (193)
T 2if7_A          122 NMTCELHLTCSVEDADDNVSFRWEALGNTLSSQ--------------------PNLTVSWDPRISSEQDYTCIAENAVSN  181 (193)
T ss_dssp             CSSEEEEEEEEEESCCTTCEEEEEETTEEEESS--------------------SEEEEEECTTTCSCCEEEEEEEETTEE
T ss_pred             CCCceEEEEEEEecCCCceEEEEEeCCEEcCCC--------------------CeEEEEeccCcCCCCcEEEEEECCCCc
Confidence            454 79999999985 57899999988754321                    1455654444 4899999999999998


Q ss_pred             eeEEE
Q psy1672         345 ADANF  349 (600)
Q Consensus       345 ~~~~v  349 (600)
                      .+..+
T Consensus       182 ~s~~~  186 (193)
T 2if7_A          182 LSFSV  186 (193)
T ss_dssp             EEEEE
T ss_pred             ccccc
Confidence            76543

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.00  E-value=1.2e-05  Score=68.26  Aligned_cols=84  Identities=14%  Similarity=0.340  Sum_probs=56.6

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcC--e---ecc-CCcc--cCccceEEEeeCCceeeeeeEEEecC
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG--R---LLL-NNTA--FSSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g--~---~l~-~~~~--~~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      ..+...+..+.+.+|+.++|.|.+.+.+.+.+.|++..  .   .+. ....  .....++.+...   .....|+|.++
T Consensus         5 ~~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~L~I~~v   81 (111)
T 1i3g_L            5 IVLTQSHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGS---GTDFTLTISNV   81 (111)
T ss_dssp             CCEEESCSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE---TTEEEEEESSC
T ss_pred             ceEEEeCCEEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcC---CCEEEEEECCC
Confidence            34455567788999999999999988777889999843  1   111 0000  001123333221   12357999999


Q ss_pred             CCCCCeEEEEEEecC
Q psy1672         327 QESDSGRFYCVAENR  341 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N~  341 (600)
                      +.+|+|.|.|.+.|.
T Consensus        82 ~~~DsG~Y~C~~~~~   96 (111)
T 1i3g_L           82 QSEDLADYFCQQYSS   96 (111)
T ss_dssp             CGGGCSEEEEEECSS
T ss_pred             CHHHCEEEEEEEecC
Confidence            999999999999986

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.00  E-value=1.2e-05  Score=76.07  Aligned_cols=95  Identities=18%  Similarity=0.306  Sum_probs=61.6

Q ss_pred             ccccccccccccccccceeeeEeecCCCCeeEEEEcC--eec---cC--C-cccCccceEEEeeCCceeeeeeEEEecCC
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG--RLL---LN--N-TAFSSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g--~~l---~~--~-~~~~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      .+...+..+.+.+|+.++|.|.+.+.|.+.+.|++..  ...   ..  . .......++.+...+   ....|.|.+++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~L~I~~v~   79 (213)
T 3r06_A            3 QMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSG---RDSSFTISSLE   79 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET---TEEEEEESSCC
T ss_pred             eeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccC---CEEEEEECCCC
Confidence            3344466788899999999999999999999999832  111   00  0 000011233222111   24589999999


Q ss_pred             CCCCeEEEEEEecCCCce-eEEEEEEE
Q psy1672         328 ESDSGRFYCVAENRAGIA-DANFTLQV  353 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~~G~~-~~~v~L~V  353 (600)
                      .+|.|.|+|.|.|..+.. ...+.|.|
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V  106 (213)
T 3r06_A           80 SEDIGSYYCQQYYNYPWTFGPGTKLEI  106 (213)
T ss_dssp             GGGCSEEEEEECSSSSCEECCCEEEEE
T ss_pred             cccCEEEEEecccCCceEEcCCceEEE
Confidence            999999999999986532 33345555

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=97.99  E-value=6.4e-06  Score=69.60  Aligned_cols=79  Identities=19%  Similarity=0.260  Sum_probs=52.6

Q ss_pred             cccccccccccccceeeeEeecCC--CCeeEEEEcC--eeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIP--PAAISWYWNG--RLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P--~p~i~W~~~g--~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      ..+..+.+.+|+.++|.|.+.+.+  .+.+.|+++.  .....  ......++.+..+. ......|+|.+++.+|+|.|
T Consensus         5 q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~--~~~~~~r~~~~~~~-~~~~~~L~I~~~~~~DsG~Y   81 (108)
T 2coq_A            5 QTPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQ--TISIGGRYSETVDE-GSNSASLTIRDLRVEDSGTY   81 (108)
T ss_dssp             EECSEEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEE--ECCCBTTEEEEEET-TTTEEEEEECSCCGGGCEEE
T ss_pred             eCCceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEE--EEEeCCceEEEEcC-CCCEEEEEECCCCcccCEEE
Confidence            345667889999999999998653  5689999852  21100  00012233322110 01246899999999999999


Q ss_pred             EEEEec
Q psy1672         335 YCVAEN  340 (600)
Q Consensus       335 ~C~a~N  340 (600)
                      .|.+.|
T Consensus        82 ~C~~~~   87 (108)
T 2coq_A           82 KCKAYR   87 (108)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999998

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=97.99  E-value=8.7e-06  Score=78.11  Aligned_cols=81  Identities=21%  Similarity=0.231  Sum_probs=58.1

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...+.+|+.++|.|.+.+.|.+.+.|+++|..+...        ... .    ...+.|.|.+++.+|+|.|+|.|.|..
T Consensus       114 ~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~--------~~~-~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          114 GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--------HQS-G----EHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--------EEE-C----SSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc--------ccC-C----CccCEEEEccCCcccCEEEEEEEEcCC
Confidence            346789999999997777788899999998765421        111 1    113579999999999999999999864


Q ss_pred             C-----ceeEEEEEEEEEc
Q psy1672         343 G-----IADANFTLQVTYR  356 (600)
Q Consensus       343 G-----~~~~~v~L~V~~~  356 (600)
                      +     ..+..+.|.|...
T Consensus       181 ~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          181 SPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             STTEECCCCCCEEEEEC--
T ss_pred             CCCcCCCCCCcEEEEEecC
Confidence            2     2345567777543

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.99  E-value=5e-06  Score=77.51  Aligned_cols=77  Identities=18%  Similarity=0.249  Sum_probs=54.9

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...+.+|+.++|.|.+.+ +.+.+.|+++|..+..        ... ..    ...+.|.|.+++.+|.|.|+|.|.|..
T Consensus       107 ~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~--------~~~-~~----~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          107 GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV--------QRG-YG----KVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE--------EEE-EC----SSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc--------ccc-CC----CceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            345789999999999876 4578999998865432        011 11    123579999999999999999999865


Q ss_pred             C---ceeEEEEEEE
Q psy1672         343 G---IADANFTLQV  353 (600)
Q Consensus       343 G---~~~~~v~L~V  353 (600)
                      .   ..+..+.|.|
T Consensus       173 ~~~s~~S~~~~l~V  186 (188)
T 1oll_A          173 HAWSFPSEPVKLLV  186 (188)
T ss_dssp             TEECCCCCCEEEEE
T ss_pred             CcCCCCCCcEEEEe
Confidence            2   2344555655

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=97.99  E-value=8.4e-06  Score=69.55  Aligned_cols=80  Identities=19%  Similarity=0.260  Sum_probs=53.8

Q ss_pred             cccccccccccccceeeeEeecCC--CCeeEEEEc--CeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIP--PAAISWYWN--GRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P--~p~i~W~~~--g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      ..+..+.+.+|+.++|.|.+.+.+  .+.+.|++.  +.....  ......|+.+..+. ......|+|.+++.+|+|.|
T Consensus         5 q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~--~~~~~~r~~~~~~~-~~~~~~L~I~~~~~~DsG~Y   81 (113)
T 1sq2_N            5 QTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEE--SISKGGRYVETVNS-GSKSFSLRINDLTVEDGGTY   81 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCE--ECCCBTTEEEEEET-TTTEEEEEECSCCGGGCEEE
T ss_pred             eCCccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceE--eEEeCCCEEEEEeC-CCCEEEEEECCCChhhCEEE
Confidence            345677889999999999998655  568999984  222110  00112233332211 11246899999999999999


Q ss_pred             EEEEecC
Q psy1672         335 YCVAENR  341 (600)
Q Consensus       335 ~C~a~N~  341 (600)
                      .|.+.|.
T Consensus        82 ~C~~~~~   88 (113)
T 1sq2_N           82 RCGLGVA   88 (113)
T ss_dssp             EEEECBT
T ss_pred             EEEEEeC
Confidence            9999984

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.98  E-value=1.1e-05  Score=75.19  Aligned_cols=88  Identities=15%  Similarity=0.257  Sum_probs=59.3

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+.. .+..|+.++|.|.+.+ +.+.+.|+++|..+.....     +.     ......+.|.|.+++..|.|.|
T Consensus         5 P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~-----~~-----~~~~~~~~L~I~~v~~~D~G~Y   72 (188)
T 1oll_A            5 PFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-----KP-----PERINKVKFYIPDMNSRMAGQY   72 (188)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-----SS-----CTTCCEEEEEESSCCGGGCEEE
T ss_pred             CEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccccccc-----cc-----CCCcceeEEEeCcCCcccCeEE
Confidence            344444444 6789999999999975 3578999999876532100     00     0011235799999999999999


Q ss_pred             EEEEecCCCce--eEEEEEEEE
Q psy1672         335 YCVAENRAGIA--DANFTLQVT  354 (600)
Q Consensus       335 ~C~a~N~~G~~--~~~v~L~V~  354 (600)
                      +|.|.|..|..  +..+.|.|.
T Consensus        73 ~C~~~~~~~~~~~s~~~~l~V~   94 (188)
T 1oll_A           73 SCIYRVGELWSEPSNLLDLVVT   94 (188)
T ss_dssp             EEEEEETTEECCCCCCEEEEEE
T ss_pred             EEEecCCCCCCCCCCceEEEec
Confidence            99999976532  344566654

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=97.98  E-value=9.3e-06  Score=78.42  Aligned_cols=94  Identities=15%  Similarity=0.258  Sum_probs=61.8

Q ss_pred             cccccccccccccccceeeeEeecCC----CCeeEEEEc--Ceecc---C-Cc--ccCccceEEEeeCCceeeeeeEEEe
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIP----PAAISWYWN--GRLLL---N-NT--AFSSYQRIFVIEQGEYERKSSLVLT  324 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P----~p~i~W~~~--g~~l~---~-~~--~~~~~~~~~~~~~g~~~~~s~L~I~  324 (600)
                      +...+..+.+.+|+.++|.|.+.+.|    .+.|.|+++  +..+.   . ..  ......++.+...+   ....|.|.
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~L~I~   80 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR---TDFTLIID   80 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET---TEEEEEES
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecC---CeEEEEEc
Confidence            33445667889999999999999988    789999995  22111   0 00  00011233332211   23479999


Q ss_pred             cCCCCCCeEEEEEEecCCCc-eeEEEEEEE
Q psy1672         325 NAQESDSGRFYCVAENRAGI-ADANFTLQV  353 (600)
Q Consensus       325 ~v~~~d~G~Y~C~a~N~~G~-~~~~v~L~V  353 (600)
                      +++.+|+|.|+|.|.|..+. ....+.|.|
T Consensus        81 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V  110 (240)
T 1moe_A           81 PVEADDVATYYCQQTNEDPYTFGGGTKLEI  110 (240)
T ss_dssp             SCCGGGCEEEEEEECSSSSCCBCCCEEEEE
T ss_pred             CCChhhCEEEEEEEccCCceeecCCEEEEE
Confidence            99999999999999998764 333445555

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=97.98  E-value=8e-06  Score=91.25  Aligned_cols=72  Identities=26%  Similarity=0.457  Sum_probs=59.2

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ....+..|+.+.|.|.+.|.|.+.+.|+++|+.+...                    ..|.|.+++..|.|.|+|.|.|.
T Consensus       389 ~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~--------------------~~L~i~~~~~~d~G~Y~C~a~n~  448 (642)
T 1e07_A          389 SYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT--------------------QELFISNITEKNSGLYTCQANNS  448 (642)
T ss_pred             CceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCC--------------------ceEEEccCChhhCeEEEEEEEcC
Confidence            3445678999999999999999999999998766432                    25899999999999999999999


Q ss_pred             CCceeEEEEEEE
Q psy1672         342 AGIADANFTLQV  353 (600)
Q Consensus       342 ~G~~~~~v~L~V  353 (600)
                      .|....+..+.+
T Consensus       449 ~g~~~~s~~~~v  460 (642)
T 1e07_A          449 ASGHSRTTVKTI  460 (642)
T ss_pred             CCCCcccceEEE
Confidence            988765544444

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=97.98  E-value=1.4e-05  Score=75.14  Aligned_cols=90  Identities=12%  Similarity=0.135  Sum_probs=59.2

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+++|..+....      ........  ...+.|.|.+++..|.|.|
T Consensus         9 P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~------~~~~~~~~--~~~~~l~I~~v~~~D~G~Y   78 (201)
T 1nkr_A            9 PSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLR------LIGEHHDG--VSKANFSISRMTQDLAGTY   78 (201)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEE------EECEEETT--EEEEEEEESSCCGGGCEEE
T ss_pred             CeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcce------eeeecCCC--CceEEEEeccCCcccCeEE
Confidence            34443343 56789999999999974 778999999886543211      00000111  2345799999999999999


Q ss_pred             EEEEecCC-----CceeEEEEEEEE
Q psy1672         335 YCVAENRA-----GIADANFTLQVT  354 (600)
Q Consensus       335 ~C~a~N~~-----G~~~~~v~L~V~  354 (600)
                      +|.|.|..     +..+..+.|.|.
T Consensus        79 ~C~a~~~~~~~~~~~~s~~~~l~V~  103 (201)
T 1nkr_A           79 RCYGSVTHSPYQVSAPSDPLDIVII  103 (201)
T ss_dssp             EEEEEBTTBTTCCCCCCCCEEEEEE
T ss_pred             EEeEecCCCCccccCCCCCEEEEee
Confidence            99998753     123445566664

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=97.98  E-value=1.3e-05  Score=77.69  Aligned_cols=82  Identities=17%  Similarity=0.314  Sum_probs=56.8

Q ss_pred             cccccccccccccccceeeeEeecCCCCeeEEEEcC----------------eeccCCcccCccceEEEeeCCceeeeee
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG----------------RLLLNNTAFSSYQRIFVIEQGEYERKSS  320 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g----------------~~l~~~~~~~~~~~~~~~~~g~~~~~s~  320 (600)
                      +...+..+.+.+|+.++|.|.+.+.+.+.|.|++..                .......   ...++.+..++  .....
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~r~~~~~~~--~~~~~   78 (246)
T 4dzb_B            4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGV---EKDKFLINHAS--LTLST   78 (246)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTC---CGGGEEEEEEE--TTEEE
T ss_pred             cEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcc---cCCcEEEEecC--CCEEE
Confidence            334456678899999999999999999999999821                1111100   01333333211  12458


Q ss_pred             EEEecCCCCCCeEEEEEEecCCC
Q psy1672         321 LVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       321 L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      |.|.+++.+|+|.|+|.|.|..+
T Consensus        79 L~I~~v~~~D~G~Y~C~~~~~~~  101 (246)
T 4dzb_B           79 LTVTSAHPEDSSFYICSARTSGD  101 (246)
T ss_dssp             EEECSCCGGGCEEEEEEECCSSG
T ss_pred             EEECCCCHHHCEEEEEEEecCCC
Confidence            99999999999999999998754

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=97.98  E-value=1.1e-05  Score=87.67  Aligned_cols=94  Identities=17%  Similarity=0.309  Sum_probs=66.2

Q ss_pred             cccccccccccccccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      |.+...+....+..|+.++|.|.+.|.|++  .|.|+++|+.+......   .......++.+...+.|.|.+++..|.|
T Consensus       115 P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~---~~~~~~~~~~~~~~s~L~i~~~~~~d~G  191 (523)
T 2rcj_C          115 PTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVET---TKPSKQSNNKYAASSYLSLTPEQWKSHR  191 (523)
T ss_pred             CeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEe---ccccccCCCCEEEEEEEEEechhcCCCc
Confidence            444444444555678999999999988764  99999999877543210   0011123344444568999999999999


Q ss_pred             EEEEEEecCCCceeEEEEE
Q psy1672         333 RFYCVAENRAGIADANFTL  351 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L  351 (600)
                      .|+|.|.|..|.....+.+
T Consensus       192 ~Y~C~a~n~~~~~~~~~~~  210 (523)
T 2rcj_C          192 SYSCQVTHEGSTVEKTVAP  210 (523)
T ss_pred             eEEEEEEecCcccccceee
Confidence            9999999999877666554

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=97.97  E-value=8e-06  Score=77.67  Aligned_cols=80  Identities=14%  Similarity=0.166  Sum_probs=54.2

Q ss_pred             ccccccccc--ccceeeeEeecCCCCeeEEEEc---CeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         261 SRYVEAVSS--ENATVVCRVDSIPPAAISWYWN---GRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       261 ~~~~~v~~G--~~v~L~C~v~g~P~p~i~W~~~---g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      +..+.+.+|  +.++|.|.+.+ |.+.+.|++.   +..+....      +......      ..|.|.+++.+|.|.|+
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~------~~~~~~~------~~l~I~~v~~~D~G~Y~   80 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGN------RISWDSK------KGFTIPSYMISYAGMVF   80 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSS------SCEEETT------TEEEEEGGGTTTCSEEE
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCC------cccccCC------ccEEEccCChhcCceEE
Confidence            356778899  99999999986 7799999884   65554322      1111122      26999999999999999


Q ss_pred             EEEecCCCceeE-EEEEEE
Q psy1672         336 CVAENRAGIADA-NFTLQV  353 (600)
Q Consensus       336 C~a~N~~G~~~~-~v~L~V  353 (600)
                      |.|.|..+.... .+.|.|
T Consensus        81 C~a~n~~~~~~s~~~~l~v   99 (213)
T 2x1w_L           81 CEAKINDESYQSIMYIVVV   99 (213)
T ss_dssp             EEEC----CEECCCEEEEE
T ss_pred             EEEEECCeeEEEEEEEEEE
Confidence            999996544322 245555

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=97.97  E-value=1.6e-05  Score=86.90  Aligned_cols=83  Identities=19%  Similarity=0.225  Sum_probs=61.8

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..+++.+|+.++|.|.+.+.|...+.|++++..+.....+....          ....+|.|.+++.+|+|.|+|.|.|.
T Consensus        56 ~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~----------r~~~SL~I~~v~~~D~G~Y~C~~~n~  125 (527)
T 3qs9_E           56 AAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQN----------RGVVSMVILKMTETQAGEYLLFIQSE  125 (527)
T ss_dssp             CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC---------------CEEEEEESSCCSSSCSEEEEEEEC-
T ss_pred             eeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCCCc----------ceEEEEEECcCChhhCeeEEEEEEec
Confidence            36889999999999999988888999999988765433221111          11236999999999999999999999


Q ss_pred             CCceeEEEEEEEE
Q psy1672         342 AGIADANFTLQVT  354 (600)
Q Consensus       342 ~G~~~~~v~L~V~  354 (600)
                      .|.....+.+.|.
T Consensus       126 ~~~~~~~~~v~v~  138 (527)
T 3qs9_E          126 ATNYTILFTVSIR  138 (527)
T ss_dssp             -CEEEEEEEEEEC
T ss_pred             cccEEEEEEEEEC
Confidence            9987777666653

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=97.96  E-value=1.3e-05  Score=79.47  Aligned_cols=75  Identities=17%  Similarity=0.294  Sum_probs=53.1

Q ss_pred             ccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      .+......+.+.+|+.++|.|.+.+.    +.|++++..+..        +.....++  ...+.|.|.+++..|.|.|+
T Consensus         2 ~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~--------~~~~~~~~--~~~~~L~i~~~~~~D~G~Y~   67 (289)
T 3mjg_X            2 VVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ--------EMAKAQDG--TFSSVLTLTNLTGLDTGEYF   67 (289)
T ss_dssp             CBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE--------EEEECTTS--CEEEEEEECSCCGGGCEEEE
T ss_pred             eecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCccc--------ceeccCCC--ceeEEEEEccCChhhCEEEE
Confidence            34444556778899999999999874    999998876521        22222222  12368999999999999999


Q ss_pred             EEEecCCCc
Q psy1672         336 CVAENRAGI  344 (600)
Q Consensus       336 C~a~N~~G~  344 (600)
                      |.|.|..|.
T Consensus        68 C~a~n~~g~   76 (289)
T 3mjg_X           68 CTHNDSRGL   76 (289)
T ss_dssp             EECCC----
T ss_pred             EEEcccCCC
Confidence            999999986

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=97.96  E-value=6.9e-06  Score=78.92  Aligned_cols=92  Identities=20%  Similarity=0.273  Sum_probs=61.2

Q ss_pred             cccccccccccccccccceeeeEeec-CC-CCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDS-IP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g-~P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      |.+........+..|+.++|.|.+.+ .| .+.+.|+++|..+......  ........++.+...+.|.|......|.|
T Consensus       136 p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~--~~~~~~~~~g~~~~~s~L~i~~~~~~d~g  213 (237)
T 3sob_L          136 PSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE--SVTEQDSKDSTYSLSSTLTLSKADYEKHK  213 (237)
T ss_dssp             CEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE--EECCCCTTTCCEEEEEEEEEEHHHHTTCC
T ss_pred             CceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceee--cccccccCCCcEEEEEEEEEcHHHccCCC
Confidence            44433333344456888999999997 44 5899999999877642100  00011112344455678999999999999


Q ss_pred             EEEEEEecCCCceeEE
Q psy1672         333 RFYCVAENRAGIADAN  348 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~  348 (600)
                      .|+|.|+|........
T Consensus       214 ~Y~C~a~n~~~~~~~~  229 (237)
T 3sob_L          214 VYACEVTHQGLSSPVT  229 (237)
T ss_dssp             EEEEEEECTTCSSCEE
T ss_pred             cEEEEEeeCCCCCcee
Confidence            9999999998655433

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=97.96  E-value=1.4e-05  Score=74.91  Aligned_cols=88  Identities=16%  Similarity=0.126  Sum_probs=57.5

Q ss_pred             cccccccccccceeeeEeecCCCC---eeEEEEcCeeccCCccc------------CccceEEEeeCCceeeeeeEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPA---AISWYWNGRLLLNNTAF------------SSYQRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p---~i~W~~~g~~l~~~~~~------------~~~~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      +..+.+..|+.++|.|.+.+.|.+   .|.|++++.........            ....++...........+.|.|.+
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   85 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   85 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence            456788899999999999988766   48999976543211100            000111111111111235799999


Q ss_pred             CCCCCCeEEEEEEecCCCceeEE
Q psy1672         326 AQESDSGRFYCVAENRAGIADAN  348 (600)
Q Consensus       326 v~~~d~G~Y~C~a~N~~G~~~~~  348 (600)
                      ++.+|.|.|+|.+.|..+.....
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~  108 (218)
T 4frw_A           86 AVQADEGEYECRVSTFPAGSFQA  108 (218)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEE
T ss_pred             ccHHHCCceeEEEEeccCceeee
Confidence            99999999999999877655443

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=97.95  E-value=1.3e-05  Score=78.18  Aligned_cols=88  Identities=14%  Similarity=0.240  Sum_probs=59.2

Q ss_pred             ccccccccccccccccccceeeeEeecCC-----CCeeEEEEc--CeeccC----C--cccCccceEEEeeCCceeeeee
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIP-----PAAISWYWN--GRLLLN----N--TAFSSYQRIFVIEQGEYERKSS  320 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P-----~p~i~W~~~--g~~l~~----~--~~~~~~~~~~~~~~g~~~~~s~  320 (600)
                      .+.+...+..+.+.+|+.++|.|.+.+.|     .+.|.|+++  ++.+..    .  .......++.+...+   ....
T Consensus        38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~  114 (254)
T 2c1o_A           38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSG---TDFT  114 (254)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET---TEEE
T ss_pred             ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCC---CEEE
Confidence            44555556778899999999999999888     489999983  322110    0  000011233332221   2347


Q ss_pred             EEEecCCCCCCeEEEEEEecCCCc
Q psy1672         321 LVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       321 L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      |.|.+++.+|.|.|+|.|.|..+.
T Consensus       115 L~I~~v~~~D~G~Y~C~a~n~~~~  138 (254)
T 2c1o_A          115 LKISRVEAEDLGIYYCVQGSHFPP  138 (254)
T ss_dssp             EEESSCCGGGCSEEEEEECSSSSC
T ss_pred             EEECcCCcccCEEEEEEEEcCcce
Confidence            999999999999999999998664

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=97.95  E-value=8.3e-06  Score=71.23  Aligned_cols=84  Identities=19%  Similarity=0.222  Sum_probs=56.1

Q ss_pred             cccccccccccccccceeeeEeecC--CCCeeEEEEc--CeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSI--PPAAISWYWN--GRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~--P~p~i~W~~~--g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      +...+..+.+.+|+.++|.|.+.+.  +.+.+.|++.  ++....  ......|+....+. ......|+|.+++.+|+|
T Consensus         3 V~Q~p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~--li~~~~R~~~~~~~-~~~~~sL~I~~v~~~DsG   79 (126)
T 3moq_A            3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQ--SISIGGRYVETVNK-GSKSFSLRISDLRVEDSG   79 (126)
T ss_dssp             EEEECSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCE--ECCCBTTEEEEEET-TTTEEEEEECSCCGGGCE
T ss_pred             eEECCceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceE--EEEeCCcEEEEEeC-CCCEEEEEECcCChHhCE
Confidence            3445677889999999999999865  5678999983  322110  00112233332211 012468999999999999


Q ss_pred             EEEEEEecCCC
Q psy1672         333 RFYCVAENRAG  343 (600)
Q Consensus       333 ~Y~C~a~N~~G  343 (600)
                      .|.|.+.|..+
T Consensus        80 ~Y~C~~~~~~~   90 (126)
T 3moq_A           80 TYKCQAFYVFF   90 (126)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEcCC
Confidence            99999998764

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=97.95  E-value=1.8e-05  Score=66.89  Aligned_cols=82  Identities=17%  Similarity=0.225  Sum_probs=53.3

Q ss_pred             cccccccccccceeeeEeecCC-CCeeEEEEcC--eecc---C--CcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         261 SRYVEAVSSENATVVCRVDSIP-PAAISWYWNG--RLLL---N--NTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P-~p~i~W~~~g--~~l~---~--~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      +..+.+.+|+.++|.|.+.+.. ...+.|++..  ....   .  ........|+.+..+. ......|+|.+++.+|+|
T Consensus         3 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~-~~~~~~L~I~~~~~~DsG   81 (110)
T 2q87_A            3 ARTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSP-ANLSFTVTLENLTEEDAG   81 (110)
T ss_dssp             EEEEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEG-GGTEEEEEESSCCGGGCE
T ss_pred             CcEEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcC-cCCEEEEEEccCCHHHCE
Confidence            3457788999999999987543 4689999843  2110   0  0000012334333211 112458999999999999


Q ss_pred             EEEEEEecCC-C
Q psy1672         333 RFYCVAENRA-G  343 (600)
Q Consensus       333 ~Y~C~a~N~~-G  343 (600)
                      .|.|.+.+.. |
T Consensus        82 ~Y~C~~~~~~~g   93 (110)
T 2q87_A           82 TYWCGVDTPWLQ   93 (110)
T ss_dssp             EEEEEEECTTSC
T ss_pred             EEEEEEecCccC
Confidence            9999999986 5

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=97.94  E-value=2.6e-05  Score=73.52  Aligned_cols=89  Identities=11%  Similarity=0.157  Sum_probs=57.1

Q ss_pred             cccccccccccceeeeEeecCCCCe---eEEEEcCeeccCCc----------ccCccceEEEeeC----CceeeeeeEEE
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAA---ISWYWNGRLLLNNT----------AFSSYQRIFVIEQ----GEYERKSSLVL  323 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~---i~W~~~g~~l~~~~----------~~~~~~~~~~~~~----g~~~~~s~L~I  323 (600)
                      +..+.+..|+.++|.|.+.+.+.+.   |.|++++..+....          ......+......    ......+.|.|
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            3457788999999999999877664   78999654321100          0000111111110    11123457999


Q ss_pred             ecCCCCCCeEEEEEEecCCCceeEEE
Q psy1672         324 TNAQESDSGRFYCVAENRAGIADANF  349 (600)
Q Consensus       324 ~~v~~~d~G~Y~C~a~N~~G~~~~~v  349 (600)
                      .+++.+|.|.|+|.|.|..|......
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~  113 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGV  113 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEE
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeee
Confidence            99999999999999999887655443

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=97.94  E-value=1.2e-05  Score=78.42  Aligned_cols=78  Identities=15%  Similarity=0.231  Sum_probs=62.9

Q ss_pred             cccccccccccceeeeEe-ecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         261 SRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...                 ...+.|.|.+++..|.|.|+|.|.
T Consensus        89 ~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~-----------------~~~~~l~i~~~~~~d~G~Y~C~~~  151 (262)
T 3rjd_A           89 VSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----------------HWNSNLTILKTNISHNGTYHCSGM  151 (262)
T ss_dssp             ESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----------------EECCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc-----------------CCCCeEEEEECChhhCEEEEEEEe
Confidence            344567789999999999 57888999999988765321                 012478999999999999999999


Q ss_pred             cCCCceeEEEEEEEEE
Q psy1672         340 NRAGIADANFTLQVTY  355 (600)
Q Consensus       340 N~~G~~~~~v~L~V~~  355 (600)
                      |..+..+..+.|.|..
T Consensus       152 n~~~~~~~~~~l~V~~  167 (262)
T 3rjd_A          152 GKHRYTSAGISVTVKE  167 (262)
T ss_dssp             SSSEEEEECEEEEEEC
T ss_pred             CCCCccccceEEEecc
Confidence            9998888878888764

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=97.94  E-value=1.5e-05  Score=79.25  Aligned_cols=97  Identities=16%  Similarity=0.304  Sum_probs=63.5

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCe-----eccCC-c--ccCccceEEEeeCCceeeeeeEEEec
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGR-----LLLNN-T--AFSSYQRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~-----~l~~~-~--~~~~~~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      .+.+...+..+.+.+|+.++|.|.+.+.|.+.|.|++++.     .+... .  ......++.+..++   ....|.|.+
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~L~I~~   88 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSG---TDFTLTISS   88 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET---TEEEEEESS
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccC---CeEEEEEcc
Confidence            3455555677889999999999999999999999998531     11100 0  00011233332211   234799999


Q ss_pred             CCCCCCeEEEEEEecCCCc-eeEEEEEEE
Q psy1672         326 AQESDSGRFYCVAENRAGI-ADANFTLQV  353 (600)
Q Consensus       326 v~~~d~G~Y~C~a~N~~G~-~~~~v~L~V  353 (600)
                      ++.+|+|.|+|.|.|..+. ....+.|.|
T Consensus        89 v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V  117 (276)
T 3auv_A           89 LQPEDFATYYCQQHYTTPPTFGCGTKVEI  117 (276)
T ss_dssp             CCGGGCEEEEEEECSSSSCCCCCCEEEEC
T ss_pred             CChhhCEEEEEEEecCCcccccCCEEEEE
Confidence            9999999999999998654 222344544

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=97.93  E-value=8.3e-06  Score=77.76  Aligned_cols=80  Identities=16%  Similarity=0.260  Sum_probs=56.8

Q ss_pred             cccccccceeeeEeecC-CCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         265 EAVSSENATVVCRVDSI-PPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      .+..|+.++|.|.+.|. |.| .|.|++++.......    .....  ..+.+...+.|.|.++...| |.|+|.|.|..
T Consensus       136 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~----~~~~~--~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~  208 (220)
T 1pz5_B          136 SDTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRT----VSSVL--QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPA  208 (220)
T ss_dssp             CCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEE----CCCEE--ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGG
T ss_pred             ccCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEE----cCCcc--cCCeEEEEEEEEEcchhcCC-ceEEEEEEECC
Confidence            45679999999999987 888 999999775311000    00111  12444456789999888766 99999999999


Q ss_pred             CceeEEEEE
Q psy1672         343 GIADANFTL  351 (600)
Q Consensus       343 G~~~~~v~L  351 (600)
                      |..++.+.+
T Consensus       209 ~~~~~~~~~  217 (220)
T 1pz5_B          209 SKVDLIKEI  217 (220)
T ss_dssp             GTEEEEEEC
T ss_pred             ccEeeeecC
Confidence            987776554

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=97.93  E-value=6.3e-06  Score=80.46  Aligned_cols=89  Identities=20%  Similarity=0.326  Sum_probs=58.1

Q ss_pred             cccccccccccccccccceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      |.+........+..|+.++|.|.+.|. |+ +.+.|+++|+.+......  ........++.+...+.|.|.++...|.|
T Consensus       155 P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~--~~~~~~~~~g~~~~~~~L~i~~~~~~d~G  232 (254)
T 2c1o_A          155 PTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN--SWTDQDSKDSTYSMSSTLTLTKDEYERHN  232 (254)
T ss_dssp             CEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEE--EECCCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred             CeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCccee--ccccccCCCCcEEEEEEEEeccccccCCC
Confidence            444333333333467799999999884 44 369999999877643100  00000112233445678999999999999


Q ss_pred             EEEEEEecCCCce
Q psy1672         333 RFYCVAENRAGIA  345 (600)
Q Consensus       333 ~Y~C~a~N~~G~~  345 (600)
                      .|+|.|.|.....
T Consensus       233 ~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          233 SYTCEATHKTSTS  245 (254)
T ss_dssp             EEEEEEECTTCSS
T ss_pred             eEEEEEEcCCCCC
Confidence            9999999988654

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=97.92  E-value=1.8e-05  Score=74.64  Aligned_cols=90  Identities=18%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEEc--Ceecc---C-C--cccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLL---N-N--TAFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~---~-~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..+ .+.+.+|+.++|.|.+.  |.+.+.|+++  +..+.   . .  .......++.+...   .....|.|.+++.+|
T Consensus         6 ~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~L~I~~v~~~D   79 (211)
T 3tv3_L            6 QPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKS---GNTASLTVSGLQTDD   79 (211)
T ss_dssp             CCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE---TTEEEEEEESCCGGG
T ss_pred             eCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEcc---CCEEEEEECCCChhH
Confidence            344 77888999999999998  8899999994  22211   0 0  00001123332221   124579999999999


Q ss_pred             CeEEEEEEecCCC--ceeEEEEEEEE
Q psy1672         331 SGRFYCVAENRAG--IADANFTLQVT  354 (600)
Q Consensus       331 ~G~Y~C~a~N~~G--~~~~~v~L~V~  354 (600)
                      +|.|+|.|.|..|  .....+.|.|.
T Consensus        80 ~G~Y~C~~~~~~~~~~~~~~~~l~V~  105 (211)
T 3tv3_L           80 EAVYYCGSLVGNWDVIFGGGTKLTVL  105 (211)
T ss_dssp             CEEEEEEEEETTTEEEECCCEEEEEC
T ss_pred             CEEEEEEEecCCCceeECCCceEEEe
Confidence            9999999999988  34445566664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.92  E-value=1.7e-06  Score=80.99  Aligned_cols=112  Identities=16%  Similarity=0.108  Sum_probs=63.7

Q ss_pred             CCCCccEEEeecc-cCcccC----ccccCCCCCccEEEccCCCCCCCCc----cccCCCCCCCEEEccCCCCCccC----
Q psy1672          73 GLLNLQKLFLARC-HIGQID----SGALDGLTNLIEIDLSDNLLTSIPS----LTFQSVRFLRDLNLARNPISKIE----  139 (600)
Q Consensus        73 ~l~~L~~L~L~~n-~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~Ls~N~i~~l~----  139 (600)
                      ...+|++|+|++| .|..-.    ..++...++|++|+|++|.|..-..    ..+...+.|++|+|++|.|....    
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            5667777777777 665321    2335556677777777777663211    12333456777777777766421    


Q ss_pred             cccccCCCCcceeeC--CCCcCcccCh----hhhcCCCCCCEEEcCCCcCC
Q psy1672         140 KGAFQFVPGLVKLDM--SESRLEHISP----EAFTGAKSLESIKLNGNRLS  184 (600)
Q Consensus       140 ~~~~~~l~~L~~L~L--s~n~l~~i~~----~~~~~l~~L~~L~Ls~N~l~  184 (600)
                      ...+...++|+.|+|  ++|.|.....    +.+...+.|+.|+|++|.+.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            223445556677777  5666654321    23334556666666666553

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=97.92  E-value=1.1e-05  Score=77.69  Aligned_cols=85  Identities=20%  Similarity=0.329  Sum_probs=55.9

Q ss_pred             cccccccccccccccceeeeEeecCCCCeeEEEEcC--ee---ccC---CcccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG--RL---LLN---NTAFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g--~~---l~~---~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      +...+..+.+.+|+.++|.|.+.+.|.+.+.|++++  ..   +..   ........++.+..+. ....+.|.|.+++.
T Consensus       130 v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~L~I~~v~~  208 (238)
T 2p1y_A          130 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNK-REKKLSLHIADSQP  208 (238)
T ss_dssp             CEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEET-TTTEEEEEETTCCG
T ss_pred             EEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecC-CCCeEEEEEcCCCH
Confidence            334456677889999999999999999999999953  11   100   0000011222222110 01235899999999


Q ss_pred             CCCeEEEEEEecCC
Q psy1672         329 SDSGRFYCVAENRA  342 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~  342 (600)
                      +|+|.|+|.|.|..
T Consensus       209 ~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          209 GDSATYFCAAIDTN  222 (238)
T ss_dssp             GGCEEEEEEEEETT
T ss_pred             HHCEEEEEEEeeCC
Confidence            99999999999984

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=97.92  E-value=1.6e-05  Score=86.33  Aligned_cols=84  Identities=14%  Similarity=0.290  Sum_probs=62.0

Q ss_pred             ccccccccceeeeEeecC-CCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         264 VEAVSSENATVVCRVDSI-PPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..+..|+.+.|.|.+.|. |.| +|.|++++..+....    ..+. ...++.+...+.|.|.+++..| |.|+|.|.|.
T Consensus       229 ~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~----~~~~-~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~  302 (523)
T 2rcj_C          229 SKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHT----FPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHK  302 (523)
T ss_pred             cccccCCceEEEEEEeceeCCCeEEEEecCCcccceEe----CCcE-ecCCCcEEEEEEEEechhhcCC-ceEEEEEEeC
Confidence            445789999999999986 777 899999887643211    1111 1233444556789999999999 9999999999


Q ss_pred             CCceeEEEEEEE
Q psy1672         342 AGIADANFTLQV  353 (600)
Q Consensus       342 ~G~~~~~v~L~V  353 (600)
                      .|.....+.+.+
T Consensus       303 ~g~~~~~~~l~v  314 (523)
T 2rcj_C          303 PSNTKVDKRVEP  314 (523)
T ss_pred             CCCcceEEecCC
Confidence            998766665544

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=97.92  E-value=1.2e-05  Score=78.82  Aligned_cols=96  Identities=16%  Similarity=0.264  Sum_probs=59.5

Q ss_pred             cccccccccccccccceeeeEee---cCCCCeeEEEEcCeeccCCcc-c----------Cc-cceEEEeeCCceeeeeeE
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVD---SIPPAAISWYWNGRLLLNNTA-F----------SS-YQRIFVIEQGEYERKSSL  321 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~---g~P~p~i~W~~~g~~l~~~~~-~----------~~-~~~~~~~~~g~~~~~s~L  321 (600)
                      +...+..+.+.+|+.++|.|.+.   +.+.+.|.|++.+........ +          .. ..+..+..+ .....+.|
T Consensus         8 v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~L   86 (268)
T 3mj6_A            8 LTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGD-TFHNDGSL   86 (268)
T ss_dssp             ----CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSC-TTTTBCCE
T ss_pred             cccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeec-CCCCEEEE
Confidence            33445667888999999999998   677889999995542211100 0          00 012222111 01123679


Q ss_pred             EEecCCCCCCeEEEEEEecCCCceeE--EEEEEE
Q psy1672         322 VLTNAQESDSGRFYCVAENRAGIADA--NFTLQV  353 (600)
Q Consensus       322 ~I~~v~~~d~G~Y~C~a~N~~G~~~~--~v~L~V  353 (600)
                      .|.+++.+|+|.|+|.|.|..+....  .+.|.|
T Consensus        87 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V  120 (268)
T 3mj6_A           87 LLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV  120 (268)
T ss_dssp             EECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEE
T ss_pred             EECCCCHhHCEEEEEEEEecCCcceEEEEEEEEE
Confidence            99999999999999999998765533  344444

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=97.91  E-value=9.8e-06  Score=76.78  Aligned_cols=76  Identities=18%  Similarity=0.233  Sum_probs=55.4

Q ss_pred             ccccccceeeeEeecCC---C-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         266 AVSSENATVVCRVDSIP---P-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P---~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      +..|+.++|.|.+.|.+   . ..|.|++++..+.....   ... ....++.+...+.|.|.+++..|.|.|+|.|.|.
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~---~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~   90 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQT---KPR-EEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSA   90 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEE---ECC-CEETTTEEEEEEEEECCHHHHHTTCCEEEEEECT
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCcccccccc---CCC-cCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEcc
Confidence            78899999999999874   2 48999998866542210   000 0123344444568999999999999999999999


Q ss_pred             CCce
Q psy1672         342 AGIA  345 (600)
Q Consensus       342 ~G~~  345 (600)
                      .|..
T Consensus        91 ~~~~   94 (207)
T 2vol_A           91 AFPA   94 (207)
T ss_dssp             TCSS
T ss_pred             CCCC
Confidence            8864

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=97.91  E-value=1.7e-05  Score=69.11  Aligned_cols=83  Identities=22%  Similarity=0.489  Sum_probs=53.4

Q ss_pred             cccccccccccccceeeeEeecC-CCCeeEEEEcCee----ccCCcccCccceEEEeeC-C-ceeeeeeEEEecCCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSI-PPAAISWYWNGRL----LLNNTAFSSYQRIFVIEQ-G-EYERKSSLVLTNAQESDS  331 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~~g~~----l~~~~~~~~~~~~~~~~~-g-~~~~~s~L~I~~v~~~d~  331 (600)
                      ..+..+.+.+|+.++|.|.+.+. +.+.|.|++.+..    +.... .....++....+ . .......|.|.+++.+|+
T Consensus         8 q~p~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~-~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~Ds   86 (127)
T 2jju_A            8 QPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQK-EGHFPRVTTVSELTKRNNLDFSISISNITPADA   86 (127)
T ss_dssp             CCCSEEEEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESS-SSCCTTEEEC-------CCBCCEEECSCCGGGC
T ss_pred             eeCCeEEEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECC-CCccCcEEeeEeeeecCCCEEEEEECCCCHHHC
Confidence            34567888999999999999865 5678999995421    11100 001122222111 0 011246899999999999


Q ss_pred             eEEEEEEecCC
Q psy1672         332 GRFYCVAENRA  342 (600)
Q Consensus       332 G~Y~C~a~N~~  342 (600)
                      |.|.|.+.|..
T Consensus        87 G~Y~C~~~~~~   97 (127)
T 2jju_A           87 GTYYCVKFRKG   97 (127)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEEcCC
Confidence            99999999864

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=97.91  E-value=1.3e-05  Score=75.77  Aligned_cols=73  Identities=23%  Similarity=0.372  Sum_probs=51.9

Q ss_pred             ccccccceeeeEeecC----CCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         266 AVSSENATVVCRVDSI----PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~----P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      +.+|+.++|.|.+.+.    |.|.+.|++++.......               ....+.|.|..+...|.|.|+|.|.|.
T Consensus       135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~~---------------~~~~~~L~i~~~~~~~~g~Y~C~a~n~  199 (214)
T 2zg1_A          135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE---------------TTRSSELTLTPRPEDHGTNLTCQMKRQ  199 (214)
T ss_dssp             CCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCSS---------------CCCSSEEEECCCTTCCSCEEEEEEECC
T ss_pred             ccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCCC---------------ceeEEEEEEecccHHcCcEEEEEEEeC
Confidence            5689999999999864    889999999875432110               112357899999999999999999998


Q ss_pred             CCc--eeEEEEEEE
Q psy1672         342 AGI--ADANFTLQV  353 (600)
Q Consensus       342 ~G~--~~~~v~L~V  353 (600)
                      .+.  .++.+.|.|
T Consensus       200 ~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          200 GAQVTTERTVQLNV  213 (214)
T ss_dssp             ----CCEEEEECCC
T ss_pred             CCCcceEEEEEEEe
Confidence            754  345555443

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=97.90  E-value=3.8e-05  Score=73.59  Aligned_cols=80  Identities=18%  Similarity=0.421  Sum_probs=58.0

Q ss_pred             cccccccceeeeEeecC-CCC-eeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCC--CCCeEEEEEEe
Q psy1672         265 EAVSSENATVVCRVDSI-PPA-AISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE--SDSGRFYCVAE  339 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~-P~p-~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~--~d~G~Y~C~a~  339 (600)
                      .+..|+.++|.|.+.+. |.+ .|.|++ +|+.+.....   ...  ...++.+...+.|.|.....  .|.|.|+|.|.
T Consensus       137 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~---~~~--~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~  211 (223)
T 1dee_B          137 NSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRG---FPS--VLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQ  211 (223)
T ss_dssp             CCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEE---CCC--EEETTEEEEEEEEEEECTTTTSTTCCEEEEEEE
T ss_pred             ccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEE---CCc--cccCCeEEEEEEEEEcHHHhccCCCCEEEEEEE
Confidence            34678999999999976 776 999999 8887654110   111  11235555567889988775  78899999999


Q ss_pred             cCCCceeEEE
Q psy1672         340 NRAGIADANF  349 (600)
Q Consensus       340 N~~G~~~~~v  349 (600)
                      |..|.....+
T Consensus       212 n~~~~~~~~~  221 (223)
T 1dee_B          212 HPNGNKEKDV  221 (223)
T ss_dssp             CTTCCEEEEE
T ss_pred             eCCCCCcccc
Confidence            9998876544

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=97.90  E-value=2.5e-05  Score=79.12  Aligned_cols=90  Identities=17%  Similarity=0.249  Sum_probs=65.3

Q ss_pred             ccccccccc---ccceeeeE-eecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         261 SRYVEAVSS---ENATVVCR-VDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       261 ~~~~~v~~G---~~v~L~C~-v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      ...+.+..|   +.+.|.|. +.+.|.+.+.|++++.....       .......++.....+.|.|.++...|.|.|+|
T Consensus       139 ~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~-------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  211 (331)
T 3u83_A          139 QAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAE-------YQEIRNPNGTVTVISRYRLVPSREAHQQSLAC  211 (331)
T ss_dssp             SSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEE-------EEEEECTTSCEEEEEEEEECCCGGGTTCEEEE
T ss_pred             CCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccc-------cceeECCCCcEEEEEEEEEEeccccCCCEEEE
Confidence            344566677   77999998 77999999999995321110       01112233444455689999999999999999


Q ss_pred             EEecCCCceeEEEEEEEEEcc
Q psy1672         337 VAENRAGIADANFTLQVTYRG  357 (600)
Q Consensus       337 ~a~N~~G~~~~~v~L~V~~~~  357 (600)
                      .|.|..|..+..+.|.|...+
T Consensus       212 ~a~n~~~~~~~~~~l~V~~~P  232 (331)
T 3u83_A          212 IVNYHMDRFKESLTLNVQYEP  232 (331)
T ss_dssp             EEEETTEEEEEEEECCEEEEE
T ss_pred             EEecCCCcceeeEEEEEecCC
Confidence            999999998888888876543

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=97.90  E-value=1.8e-05  Score=78.45  Aligned_cols=82  Identities=21%  Similarity=0.317  Sum_probs=61.2

Q ss_pred             cccccccccccceeeeEeecCCCCe-eEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAA-ISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~-i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      +....+..|+.+.|.|.+.+.+.+. +.|++ ++..+....      +..+..++      .|.|.+++..|.|.|+|.|
T Consensus        96 ~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~------~~~~~~~~------~L~i~~v~~~d~G~Y~C~a  163 (289)
T 3ejj_X           96 AQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKT------VYFFSPWR------GFIIRKAKVLDSNTYVCKT  163 (289)
T ss_dssp             CSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTC------CEEEETTT------EEEESSCCGGGCEEEEEEE
T ss_pred             cceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCc------cEEECCCC------CEEEeecccccCEEEEEEE
Confidence            4556778899999999999877765 99987 665554322      33333333      6999999999999999999


Q ss_pred             e-cCCCceeEEEEEEEE
Q psy1672         339 E-NRAGIADANFTLQVT  354 (600)
Q Consensus       339 ~-N~~G~~~~~v~L~V~  354 (600)
                      . |..+..+..+.|.|.
T Consensus       164 ~~~~~~~~~~~~~l~V~  180 (289)
T 3ejj_X          164 MVNGRESTSTGIWLKVN  180 (289)
T ss_dssp             EETTEEEECCCEEEEEE
T ss_pred             EeCCCccccccEEEEEE
Confidence            9 555666666777775

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=97.89  E-value=2.5e-05  Score=77.65  Aligned_cols=80  Identities=13%  Similarity=0.299  Sum_probs=61.1

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+..|+.++|.|.+.+    .+.|++++..+.          ... ..+     +.|.|.+++..|.|.
T Consensus        12 ~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~----------~~~-~~~-----~~L~i~~~~~~d~G~   71 (290)
T 2o26_X           12 PPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE----------MVE-NKK-----NEWIQEKAEATRTGT   71 (290)
T ss_dssp             CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC----------EEE-ECS-----SEEEETTCCGGGCEE
T ss_pred             CCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee----------eec-CCC-----ceEEEeccCHHhCeE
Confidence            355555567778899999999999987    899999886551          001 111     489999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEEEc
Q psy1672         334 FYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      |+|.|.|  |. ...+.|.|...
T Consensus        72 Y~C~~~n--g~-~~~~~l~V~~~   91 (290)
T 2o26_X           72 YTCSNSN--GL-TSSIYVFVRDP   91 (290)
T ss_dssp             EEEEESS--SC-EEEEEEEEECS
T ss_pred             EEEEeeC--Cc-cEEEEEEEeCC
Confidence            9999999  54 66677777643

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=97.89  E-value=1.1e-05  Score=75.17  Aligned_cols=65  Identities=22%  Similarity=0.301  Sum_probs=49.4

Q ss_pred             cccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEE
Q psy1672         269 SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN  348 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~  348 (600)
                      +..++|.|.+.+.|.+.+.|+++|+.+ ...            .      ..+.+.. ...|.|.|+|+|.|.+|..+..
T Consensus       115 ~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~~------------~------~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~  174 (182)
T 1hnf_A          115 CINTTLTCEVMNGTDPELNLYQDGKHL-KLS------------Q------RVITHKW-TTSLSAKFKCTAGNKVSKESSV  174 (182)
T ss_dssp             TTTTEEEEECSSCSSCEEEEEESSCEE-EEE------------S------SCEEEEC-CSCEEEEEEEEEECSSCEEEEE
T ss_pred             cCcEEEEeEccCCCCCEEEEEECCEEC-CCC------------C------cEEEEec-ccCCCcEEEEEEEeCCCCcEEc
Confidence            347899999999899999999998766 110            0      1233322 4789999999999999998887


Q ss_pred             EEEEE
Q psy1672         349 FTLQV  353 (600)
Q Consensus       349 v~L~V  353 (600)
                      ..+.+
T Consensus       175 ~~~~c  179 (182)
T 1hnf_A          175 EPVSC  179 (182)
T ss_dssp             EEEEE
T ss_pred             ceecC
Confidence            77755

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=97.89  E-value=6.4e-06  Score=77.20  Aligned_cols=88  Identities=24%  Similarity=0.309  Sum_probs=58.7

Q ss_pred             cccccccccceeeeEee----cCCCCeeEEEEcCeeccCCcc-----cC-ccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         263 YVEAVSSENATVVCRVD----SIPPAAISWYWNGRLLLNNTA-----FS-SYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~----g~P~p~i~W~~~g~~l~~~~~-----~~-~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      .+.+..|+.++|.|.+.    +.|.+.+.|.+++..+.....     .. ...+..+...    ....|.|.+++.+|.|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~----~~~~L~I~~v~~~D~G   78 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT----NNLSIVILALRPSDEG   78 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEEST----TTTEEEECSCCGGGCE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccC----CCcEEEEecccchhCe
Confidence            35678899999999985    346678999998876521100     00 0112222111    1247999999999999


Q ss_pred             EEEEEEecCCCcee-----EEEEEEEE
Q psy1672         333 RFYCVAENRAGIAD-----ANFTLQVT  354 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~-----~~v~L~V~  354 (600)
                      .|+|.|.|..|...     ..+.|.|.
T Consensus        79 ~Y~C~~~~~~g~~~~~~~~~~~~l~V~  105 (201)
T 1dr9_A           79 TYECVVLKYEKDAFKREHLAEVTLSVK  105 (201)
T ss_dssp             EEEEEEEECCTTSCEEEEEEEEEEEEE
T ss_pred             EEEEEEEcCCCCccccccccEEEEEEc
Confidence            99999999887653     45556554

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=97.88  E-value=1.4e-05  Score=77.99  Aligned_cols=76  Identities=17%  Similarity=0.179  Sum_probs=56.4

Q ss_pred             ccccccceeeeEeecC---CCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         266 AVSSENATVVCRVDSI---PPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~---P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      +..|+.++|.|.+.+.   |.+ .|.|++++..+.....   . ......++.+...+.|.|.+++..|.|.|+|.|.|.
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~---~-~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~  104 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQT---H-APEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSG  104 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEE---C-CCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCccc---c-cceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecc
Confidence            7799999999999976   766 8999998765542210   0 011123344455678999999999999999999999


Q ss_pred             CCce
Q psy1672         342 AGIA  345 (600)
Q Consensus       342 ~G~~  345 (600)
                      .|..
T Consensus       105 ~~~~  108 (239)
T 1i1c_A          105 AFPA  108 (239)
T ss_dssp             SSSS
T ss_pred             cCCC
Confidence            8864

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=97.88  E-value=2.4e-05  Score=75.09  Aligned_cols=97  Identities=14%  Similarity=0.256  Sum_probs=62.7

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcC--eecc---C--C-cccCccceEEEeeCCceeeeeeEEEecC
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG--RLLL---N--N-TAFSSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g--~~l~---~--~-~~~~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      +.+...+..+.+..|+.++|.|.+.+.|.+.+.|++..  ....   .  . .......++.....+   ....|.|.++
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~L~I~~v  101 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSG---TDFTLTISSL  101 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET---TEEEEEESSC
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCC---CEEEEEECCC
Confidence            34444466788899999999999999889999999832  1110   0  0 000011233222111   2457999999


Q ss_pred             CCCCCeEEEEEEecCCCce-eEEEEEEEE
Q psy1672         327 QESDSGRFYCVAENRAGIA-DANFTLQVT  354 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N~~G~~-~~~v~L~V~  354 (600)
                      +.+|+|.|+|.|.|..+.. ...+.+.|.
T Consensus       102 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~  130 (237)
T 3sob_L          102 QPEDFATYYCQQSYTTPPTFGQGTKVEIK  130 (237)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEE
T ss_pred             ChhhCeEEEEeeccCCceEEcCcEEEEEe
Confidence            9999999999999987632 233455553

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=97.88  E-value=1.1e-05  Score=76.34  Aligned_cols=91  Identities=21%  Similarity=0.306  Sum_probs=60.4

Q ss_pred             ccccccccccccccccccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      .|.+...+....+..|+.++|.|.+.+.++  +.+.|+++|+.+......  ........++.+...+.|.|......|.
T Consensus       112 ~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~--~~~~~~~~~g~~~~~s~l~i~~~~~~d~  189 (213)
T 3r06_A          112 KPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQ--SVTDQDSKDSTYSLSSTLSLTKADYERH  189 (213)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEE--EECCCCTTTCCEEEEEEEEEEHHHHHTC
T ss_pred             CceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEe--ccCceeCCCCcEEEEEEEEeCHHHhccC
Confidence            344444344444556788999999997654  389999999887642100  0011111234455566888999988899


Q ss_pred             eEEEEEEecCCCcee
Q psy1672         332 GRFYCVAENRAGIAD  346 (600)
Q Consensus       332 G~Y~C~a~N~~G~~~  346 (600)
                      |.|+|.|+|......
T Consensus       190 g~YtC~v~n~~~~~~  204 (213)
T 3r06_A          190 NLYTCEVTHKTSTAA  204 (213)
T ss_dssp             CEEEEEEEETTCSSC
T ss_pred             CeEEEEEEecccCcc
Confidence            999999999875543

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=97.87  E-value=2.9e-05  Score=75.36  Aligned_cols=94  Identities=12%  Similarity=0.225  Sum_probs=61.3

Q ss_pred             cccccccccccccccceeeeEeecCCCCeeEEEEcC--eec---cCC-cc--cCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG--RLL---LNN-TA--FSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g--~~l---~~~-~~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      +...+..+.+.+|+.++|.|.+.+.|.+.+.|+++.  ..+   ... ..  .....++.+..++   ....|.|.+++.
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~L~I~~v~~   80 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG---TDFTLSINSVET   80 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET---TEEEEEESSCCG
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCC---CEEEEEECCCCh
Confidence            344466788899999999999999998999999842  111   000 00  0011233332211   235799999999


Q ss_pred             CCCeEEEEEEecCCCce-eEEEEEEE
Q psy1672         329 SDSGRFYCVAENRAGIA-DANFTLQV  353 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G~~-~~~v~L~V  353 (600)
                      +|+|.|+|.|.|..+.. ...+.|.|
T Consensus        81 ~D~G~Y~C~~~n~~~~~~~~~~~L~V  106 (242)
T 2znx_A           81 EDFGMYFCQQSNSXPYTFGGGTKLEI  106 (242)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             HHCEEEEEeEecCCceEECCCEEEEE
Confidence            99999999999986532 22345555

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=97.87  E-value=1.4e-05  Score=78.34  Aligned_cols=81  Identities=15%  Similarity=0.224  Sum_probs=55.5

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEE--cCeeccCC----c--ccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLNN----T--AFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~~~----~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..+..+.+.+|+.++|.|.+.+.|.+.+.|++  ++..+...    .  ......++.+..+   .....|.|.+++.+|
T Consensus       144 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~L~I~~v~~~D  220 (257)
T 1f3r_B          144 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGS---GTDYTLTISSLQPED  220 (257)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE---BTEEEEEECSCCGGG
T ss_pred             ccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecC---CCEEEEEECCCChhh
Confidence            33556778899999999999999889999999  55432100    0  0000122222211   123579999999999


Q ss_pred             CeEEEEEEecCC
Q psy1672         331 SGRFYCVAENRA  342 (600)
Q Consensus       331 ~G~Y~C~a~N~~  342 (600)
                      +|.|+|.|.|..
T Consensus       221 ~G~Y~C~a~n~~  232 (257)
T 1f3r_B          221 VATYFCYQYNNG  232 (257)
T ss_dssp             CSEEEEEEESSS
T ss_pred             CEEEEEEEeCCC
Confidence            999999999974

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=97.86  E-value=2.4e-05  Score=66.24  Aligned_cols=81  Identities=17%  Similarity=0.328  Sum_probs=53.8

Q ss_pred             ccccccccccccccceeeeEeecCC----CCeeEEEEc--Cee---cc-CCcc--cCccceEEEeeCCceeeeeeEEEec
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIP----PAAISWYWN--GRL---LL-NNTA--FSSYQRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P----~p~i~W~~~--g~~---l~-~~~~--~~~~~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      ...+..+.+.+|+.++|.|.+.+.+    .+.+.|++.  +..   +. ....  .....|+.+...+   ....|+|.+
T Consensus         5 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~---~~~~L~I~~   81 (111)
T 1j05_L            5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR---TDFTLIIDP   81 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEET---TEEEEEESS
T ss_pred             EEeCCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccC---CEEEEEECC
Confidence            3345677889999999999998776    478999984  221   11 0000  0011233332211   235799999


Q ss_pred             CCCCCCeEEEEEEecC
Q psy1672         326 AQESDSGRFYCVAENR  341 (600)
Q Consensus       326 v~~~d~G~Y~C~a~N~  341 (600)
                      ++.+|+|.|.|.+.|.
T Consensus        82 v~~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           82 VEADDVATYYCQQTNE   97 (111)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             CCcccCEEEEEEEecC
Confidence            9999999999999985

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=97.86  E-value=2.7e-05  Score=76.16  Aligned_cols=99  Identities=13%  Similarity=0.234  Sum_probs=63.0

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEc--Ceecc---C-Cc--ccCccceEEEeeCCceeeeeeEEEecC
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLL---N-NT--AFSSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~---~-~~--~~~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      +.+...+..+.+..|+.++|.|.+.+.|.+.+.|+++  +..+.   . ..  ......++.....+   ....|.|.++
T Consensus       139 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~L~I~~v  215 (256)
T 3umt_A          139 IQLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSG---SDYSLTISSL  215 (256)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEET---TEEEEEECSC
T ss_pred             cEEEcCCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCC---CEEEEEECCC
Confidence            4444455667888999999999999998889999984  22211   0 00  00001223222222   2347999999


Q ss_pred             CCCCCeEEEEEEecCCCce-eEEEEEEEEEc
Q psy1672         327 QESDSGRFYCVAENRAGIA-DANFTLQVTYR  356 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N~~G~~-~~~v~L~V~~~  356 (600)
                      +.+|+|.|+|.|.|..+.. .....|.|...
T Consensus       216 ~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~  246 (256)
T 3umt_A          216 ESEDFVDYYCLQYASSPPTFGGGTKLEIKRA  246 (256)
T ss_dssp             CGGGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             ChhHCEEEEEEEeeCCCcEECCCEEEEEECC
Confidence            9999999999999965433 23356666543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=97.86  E-value=3.7e-05  Score=76.94  Aligned_cols=75  Identities=9%  Similarity=0.171  Sum_probs=56.9

Q ss_pred             cccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         263 YVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ...+..|+.+.|.|.+. +.|.+.+.|+++++.+....      +..+..+.. .....|.|.+++..|.|.|+|.|.|.
T Consensus       116 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~------~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~~~  188 (312)
T 2y23_A          116 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGP------KYKMHIDRN-TGIIEMFMEKLQDEDEGTYTFQLQDG  188 (312)
T ss_dssp             EEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSS------SCEEEEETT-TTEEEEEESCCCGGGCEEEEEEEESS
T ss_pred             ceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCC------cEEEEEccC-CCEEEEEEccCCcccCEeEEEEEEeC
Confidence            66788999999999999 89999999999998876543      222222110 11246999999999999999999875


Q ss_pred             CCc
Q psy1672         342 AGI  344 (600)
Q Consensus       342 ~G~  344 (600)
                      .+.
T Consensus       189 ~~~  191 (312)
T 2y23_A          189 KAT  191 (312)
T ss_dssp             SCE
T ss_pred             Cce
Confidence            443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=97.86  E-value=2.9e-05  Score=85.55  Aligned_cols=103  Identities=21%  Similarity=0.224  Sum_probs=71.9

Q ss_pred             ccccccccccccccccccceeeeEeecC-CCCeeEEEEcCeecc----CCc--ccC-ccceEEEeeCCceeeeeeEEEec
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSI-PPAAISWYWNGRLLL----NNT--AFS-SYQRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~~g~~l~----~~~--~~~-~~~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      .|.+...+....+..|+.+.|.|.+.+. |.+.+.|++++....    ...  ... ...+..+..++.......|.|.+
T Consensus       112 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~  191 (585)
T 2ocw_A          112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQ  191 (585)
T ss_pred             CccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEcc
Confidence            3444455666778899999999999965 457899999765321    000  000 12334444444322334799999


Q ss_pred             CCCCCCeEEEEEEecCCCceeEEEEEEEEEc
Q psy1672         326 AQESDSGRFYCVAENRAGIADANFTLQVTYR  356 (600)
Q Consensus       326 v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~~~  356 (600)
                      ++..|.|.|+|.|.|..|.....+.|.|...
T Consensus       192 v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~  222 (585)
T 2ocw_A          192 LRLSDAGQYLCQAGDDSNSNKKNADLQVLKP  222 (585)
T ss_pred             CChhHCeEEEEEeccCCccccceEEEEEccC
Confidence            9999999999999999999888888888653

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=97.85  E-value=1.6e-05  Score=77.23  Aligned_cols=96  Identities=19%  Similarity=0.316  Sum_probs=62.5

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcC--e---eccCC-c--ccCccceEEEeeCCceeeeeeEEEecC
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNG--R---LLLNN-T--AFSSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g--~---~l~~~-~--~~~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      ..+...+..+.+.+|+.++|.|.+.+.|.+.+.|++..  .   .+... .  ......++.....+   ....|.|.++
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~---~~~~L~I~~v   81 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSG---TDYSLTISNL   81 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET---TEEEEEESSC
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCC---CEEEEEEccC
Confidence            34445567788899999999999999999999999842  1   11000 0  00011222222211   2347999999


Q ss_pred             CCCCCeEEEEEEecCCCce-eEEEEEEE
Q psy1672         327 QESDSGRFYCVAENRAGIA-DANFTLQV  353 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N~~G~~-~~~v~L~V  353 (600)
                      +.+|+|.|+|.|.|..+.. .....|.|
T Consensus        82 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V  109 (250)
T 3esu_F           82 EQEDIGTYFCQQGNTLPWTFGGGTKLEI  109 (250)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             ChhhCEEEEEEEeeCCCceECCCEEEEE
Confidence            9999999999999986653 22334555

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=97.85  E-value=2.1e-05  Score=72.44  Aligned_cols=72  Identities=13%  Similarity=0.263  Sum_probs=52.1

Q ss_pred             ccccccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         264 VEAVSSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..+.+|+.++|.|.+.+.|.+  .+.|++++..+......              .....+.|.  +..|.|.|+|.|.|.
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~--------------~~~~~l~i~--~~~d~G~Y~C~~~n~   71 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP--------------GQKTEFKVD--SDDQWGEYSCVFLPE   71 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC--------------CSEEEEEEC--GGGCCEEEEEEEEST
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc--------------CCcEEEEEe--chhhCeEEEEEEECC
Confidence            456789999999999988777  89999998877543311              112345555  588999999999993


Q ss_pred             CCceeEEEEEEEE
Q psy1672         342 AGIADANFTLQVT  354 (600)
Q Consensus       342 ~G~~~~~v~L~V~  354 (600)
                      .   ...+.|.|.
T Consensus        72 ~---~~~~~l~V~   81 (184)
T 3b5h_A           72 P---MGTANIQLH   81 (184)
T ss_dssp             T---SCEEEEEEC
T ss_pred             c---CcEEEEEEe
Confidence            2   345566664

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=97.85  E-value=8.9e-06  Score=69.94  Aligned_cols=86  Identities=19%  Similarity=0.435  Sum_probs=53.8

Q ss_pred             ccccccccccccccccceeeeEeecC-CCCeeEEEEcCee----ccCCcccCccceEEEeeC--CceeeeeeEEEecCCC
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSI-PPAAISWYWNGRL----LLNNTAFSSYQRIFVIEQ--GEYERKSSLVLTNAQE  328 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~~g~~----l~~~~~~~~~~~~~~~~~--g~~~~~s~L~I~~v~~  328 (600)
                      .+...+..+.+.+|+.++|.|.+.+. +.+.+.|++++..    +.... .....+.....+  ........|.|.+++.
T Consensus         9 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~-~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   87 (120)
T 2yz1_A            9 KVTQPEKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFT-GEHFPRVTNVSDATKRNNMDFSIRISNVTP   87 (120)
T ss_dssp             CEECCSSEEEECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEEC-EECTTTCCSEEECCBSSTTBCCEEECSCCG
T ss_pred             EEECCCceEEEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcC-CcccCcccceeeccccCCCeEEEEECCCCH
Confidence            33444567889999999999999865 5678999996411    10000 000001100000  0001235799999999


Q ss_pred             CCCeEEEEEEecCC
Q psy1672         329 SDSGRFYCVAENRA  342 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~  342 (600)
                      +|+|.|.|.+.+..
T Consensus        88 ~DsG~Y~C~~~~~~  101 (120)
T 2yz1_A           88 EDAGTYYCVKFQKG  101 (120)
T ss_dssp             GGCEEEEEEEEECC
T ss_pred             HHCEEEEEEEEcCC
Confidence            99999999999864

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=97.85  E-value=1.7e-05  Score=76.62  Aligned_cols=82  Identities=15%  Similarity=0.164  Sum_probs=60.1

Q ss_pred             ccccccccccccceeeeEeecC-CC-C-eeEEEEcCeec-cCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         260 DSRYVEAVSSENATVVCRVDSI-PP-A-AISWYWNGRLL-LNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~-P~-p-~i~W~~~g~~l-~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      .+....+..|+.++|.|.+.|. |. | .|.|+++|+.+ ....     .......++.+...+.|.|.+++..|.|.|+
T Consensus        19 ~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~-----~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~   93 (231)
T 2w59_A           19 PPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDP-----MVLQEHFNGTYSASSAVPVSTQDWLSGERFT   93 (231)
T ss_dssp             CCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCC-----CEEEECTTSCEEEEEEEECCHHHHHTTCCEE
T ss_pred             CcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeecccccc-----ccceECCCCcEEEEEEEEecchhccCCCEEE
Confidence            3455667799999999999985 64 4 99999988766 2211     1122234455555678999999999999999


Q ss_pred             EEEecCCCcee
Q psy1672         336 CVAENRAGIAD  346 (600)
Q Consensus       336 C~a~N~~G~~~  346 (600)
                      |.|.|..+...
T Consensus        94 C~~~~~~~~~~  104 (231)
T 2w59_A           94 CTVQHEELPLP  104 (231)
T ss_dssp             EEEECTTCSSC
T ss_pred             EEEEcCCCCCc
Confidence            99999887543

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=97.84  E-value=2.4e-05  Score=66.63  Aligned_cols=93  Identities=20%  Similarity=0.314  Sum_probs=58.0

Q ss_pred             cccccccccccceeeeEeecC--CCCeeEEEEcC-------eecc--CCc--ccCccceEEEeeCCceeeeeeEEEecCC
Q psy1672         261 SRYVEAVSSENATVVCRVDSI--PPAAISWYWNG-------RLLL--NNT--AFSSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~--P~p~i~W~~~g-------~~l~--~~~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      +..+.+..|+.++|.|.....  ....+.|++..       ..+.  ...  ......++.+..+ ......+|+|.+++
T Consensus         4 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~-~~~~~~sL~I~~v~   82 (115)
T 2or7_A            4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGN-ISEGNVSLTIENTV   82 (115)
T ss_dssp             --CEEEETTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSC-GGGTBCCEEESSCC
T ss_pred             ccEEEEEcCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecC-ccCCeEEEEEccCC
Confidence            456778899999999988742  34679999964       1111  000  0001122222111 11224579999999


Q ss_pred             CCCCeEEEEEEecCCCceeEEEEEEEE
Q psy1672         328 ESDSGRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      .+|+|.|.|.+.+........+.|.|.
T Consensus        83 ~~DsG~Y~C~v~~~~~~~~~~v~L~V~  109 (115)
T 2or7_A           83 VGDGGPYCCVVEIPGAFHFVDYMLEVK  109 (115)
T ss_dssp             GGGCEEEEEEECCTTSCEEEEEEEEEE
T ss_pred             HHHCEEEEEEEECCCceeEEEEEEEEc
Confidence            999999999999876555666666664

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=97.84  E-value=1.8e-05  Score=74.81  Aligned_cols=75  Identities=20%  Similarity=0.279  Sum_probs=50.1

Q ss_pred             cccccceeeeEeecCCC----CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         267 VSSENATVVCRVDSIPP----AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~P~----p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ..|+.++|.|.+.|.++    ..|.|+++++.+.....    .......++.+...+.|.|......|.|.|+|.|.|..
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~----~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~   91 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT----KPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA   91 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEE----CCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCccc----CCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCc
Confidence            68999999999998753    49999999977653210    11112233433333445554444455999999999998


Q ss_pred             Cce
Q psy1672         343 GIA  345 (600)
Q Consensus       343 G~~  345 (600)
                      +..
T Consensus        92 ~~~   94 (207)
T 1l6x_A           92 LPA   94 (207)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            865

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=97.84  E-value=3.5e-05  Score=66.99  Aligned_cols=96  Identities=17%  Similarity=0.287  Sum_probs=60.8

Q ss_pred             cccccccccccccccceeeeEeecCC----CCeeEEEEcC--ee---ccCC-c--ccCccceEEEeeCCceeeeeeEEEe
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIP----PAAISWYWNG--RL---LLNN-T--AFSSYQRIFVIEQGEYERKSSLVLT  324 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P----~p~i~W~~~g--~~---l~~~-~--~~~~~~~~~~~~~g~~~~~s~L~I~  324 (600)
                      +...+..+.+.+|+.++|.|.+.+.+    .+.+.|++..  +.   +... .  ......|+.+...   .....|+|.
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~---~~~~sL~I~   80 (126)
T 4ffy_L            4 LTQSPASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGS---ETDFTLTID   80 (126)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE---TTEEEEEES
T ss_pred             EEeCCCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecC---CCEEEEEEC
Confidence            34446678899999999999998776    5689999842  11   1100 0  0001123332211   134589999


Q ss_pred             cCCCCCCeEEEEEEecCCCce-eEEEEEEEEE
Q psy1672         325 NAQESDSGRFYCVAENRAGIA-DANFTLQVTY  355 (600)
Q Consensus       325 ~v~~~d~G~Y~C~a~N~~G~~-~~~v~L~V~~  355 (600)
                      +++.+|+|.|.|.+.|..... .....|.|..
T Consensus        81 ~v~~~DsG~Y~C~~~~~~~~~fg~gT~L~V~~  112 (126)
T 4ffy_L           81 SVETDDAATYYCQQNNEDPYTFGGGTKLEIKG  112 (126)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEEC
T ss_pred             CCCHHHCEEEEEEEecCCCcEECCCEEEEEec
Confidence            999999999999999865432 2335666643

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=97.84  E-value=2.2e-05  Score=74.68  Aligned_cols=82  Identities=13%  Similarity=0.175  Sum_probs=55.0

Q ss_pred             cccccccccccceeeeEeecCC--CCeeEEEEc--CeeccCCcc-----------cCccceEEEeeCCceeeeeeEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIP--PAAISWYWN--GRLLLNNTA-----------FSSYQRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P--~p~i~W~~~--g~~l~~~~~-----------~~~~~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      +..+.+..|+.++|.|.+.+.+  .+.+.|+++  +..+.....           .....|+.+..+. ....+.|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~L~I~~   85 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLET-SATTAYLQINN   85 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEG-GGTEEEEEECS
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEec-CCCEEEEEECC
Confidence            4456788999999999999875  678999996  332210000           0011233333221 01235899999


Q ss_pred             CCCCCCeEEEEEEecCCC
Q psy1672         326 AQESDSGRFYCVAENRAG  343 (600)
Q Consensus       326 v~~~d~G~Y~C~a~N~~G  343 (600)
                      ++.+|+|.|+|.|.|..+
T Consensus        86 v~~~D~G~Y~C~~~~~~~  103 (219)
T 1c1e_H           86 LKNEDMATYFCARGTTIV  103 (219)
T ss_dssp             CCGGGCEEEEEEEEETTT
T ss_pred             CCcccCEEEEEEEeccCc
Confidence            999999999999999874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.83  E-value=3.1e-06  Score=79.21  Aligned_cols=117  Identities=11%  Similarity=0.129  Sum_probs=87.7

Q ss_pred             ccccCCCCCccEEEccCC-CCCCCC----ccccCCCCCCCEEEccCCCCCccC----cccccCCCCcceeeCCCCcCccc
Q psy1672          92 SGALDGLTNLIEIDLSDN-LLTSIP----SLTFQSVRFLRDLNLARNPISKIE----KGAFQFVPGLVKLDMSESRLEHI  162 (600)
Q Consensus        92 ~~~f~~l~~L~~L~Ls~N-~l~~l~----~~~f~~l~~L~~L~Ls~N~i~~l~----~~~~~~l~~L~~L~Ls~n~l~~i  162 (600)
                      ...+...++|++|+|++| .|..-.    ...+...++|++|+|++|.|....    ...+...++|++|+|++|.|...
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            345778899999999999 887421    124556788999999999987532    23345567899999999999874


Q ss_pred             C----hhhhcCCCCCCEEEc--CCCcCCCCCc----ccccccccccEEEccCCcCc
Q psy1672         163 S----PEAFTGAKSLESIKL--NGNRLSHFPV----RSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       163 ~----~~~~~~l~~L~~L~L--s~N~l~~l~~----~~~~~l~~L~~L~l~~N~~~  208 (600)
                      .    ...+.....|+.|+|  ++|.|.....    ..+...+.|+.|++.+|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3    345667789999999  8899886432    33445578999999998754

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=97.83  E-value=2.3e-05  Score=75.01  Aligned_cols=77  Identities=16%  Similarity=0.360  Sum_probs=56.8

Q ss_pred             cccccccceeeeEeecC-CC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         265 EAVSSENATVVCRVDSI-PP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~-P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      .+..|+.++|.|.+.+. |.  +.|.|++++..+....    ... ....++.+...+.|.|......|.|.|+|.|.|.
T Consensus       133 ~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~----~~~-~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~  207 (220)
T 2fbj_H          133 PALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVN----FPP-ALASGGRYTMSNQLTLPAVECPEGESVKCSVQHD  207 (220)
T ss_dssp             SSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEE----CCC-EECSSSCEEEEEEEEECGGGSCTTCEEEEEEEET
T ss_pred             cccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEe----cCc-eECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcC
Confidence            45689999999999976 76  7999999886552100    111 1223455555678999999889999999999999


Q ss_pred             CCcee
Q psy1672         342 AGIAD  346 (600)
Q Consensus       342 ~G~~~  346 (600)
                      .|...
T Consensus       208 ~~~~~  212 (220)
T 2fbj_H          208 SNPVQ  212 (220)
T ss_dssp             TSCCE
T ss_pred             CCceE
Confidence            98754

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=97.81  E-value=3.7e-05  Score=75.00  Aligned_cols=95  Identities=16%  Similarity=0.272  Sum_probs=61.0

Q ss_pred             ccccccccccccccccceeeeEeecCC-----CCeeEEEEcC--eec---cC-Cc--ccCccceEEEeeCCceeeeeeEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIP-----PAAISWYWNG--RLL---LN-NT--AFSSYQRIFVIEQGEYERKSSLV  322 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P-----~p~i~W~~~g--~~l---~~-~~--~~~~~~~~~~~~~g~~~~~s~L~  322 (600)
                      .+...+..+.+..|+.++|.|.+.+.+     .+.|.|++++  ..+   .. ..  ......++.+...+   ....|.
T Consensus        36 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~L~  112 (252)
T 3bkj_L           36 LMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSG---TDFTLR  112 (252)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET---TEEEEE
T ss_pred             EEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccC---CEEEEE
Confidence            344446677889999999999999887     6899999953  111   00 00  00001233322211   234799


Q ss_pred             EecCCCCCCeEEEEEEecCCCce-eEEEEEEE
Q psy1672         323 LTNAQESDSGRFYCVAENRAGIA-DANFTLQV  353 (600)
Q Consensus       323 I~~v~~~d~G~Y~C~a~N~~G~~-~~~v~L~V  353 (600)
                      |.+++.+|+|.|+|.|.|..+.. ...+.|.|
T Consensus       113 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V  144 (252)
T 3bkj_L          113 ISRVEAEDLGVYYCFQASLVPLTFGAGTKLEL  144 (252)
T ss_dssp             ESSCCGGGCEEEEEEECSBSSCEECCCEEEEE
T ss_pred             ECCCCcccCEEEEEEEEcCCccEECCCEEEEE
Confidence            99999999999999999986632 22234555

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=97.81  E-value=2.6e-05  Score=76.39  Aligned_cols=98  Identities=18%  Similarity=0.310  Sum_probs=53.1

Q ss_pred             ccccccccccccccccceeeeEeecCCCCeeEEEEc--CeeccCCcccC-----------ccceEEEeeCCceeeeeeEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLLNNTAFS-----------SYQRIFVIEQGEYERKSSLV  322 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~~~~~~~-----------~~~~~~~~~~g~~~~~s~L~  322 (600)
                      .+...+..+.+.+|+.++|.|.+.+.+.+.+.|++.  +..........           ...+.....+. ......|.
T Consensus         4 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~L~   82 (259)
T 3omz_A            4 NLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGS-TRKNLRMI   82 (259)
T ss_dssp             -------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC---CCCEEE
T ss_pred             ccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecC-CCCeEEEE
Confidence            344556678889999999999999988899999982  21110000000           00011111110 11245799


Q ss_pred             EecCCCCCCeEEEEEEecCCCc---eeEEEEEEEE
Q psy1672         323 LTNAQESDSGRFYCVAENRAGI---ADANFTLQVT  354 (600)
Q Consensus       323 I~~v~~~d~G~Y~C~a~N~~G~---~~~~v~L~V~  354 (600)
                      |.+++.+|+|.|+|.+.|..+.   ....+.|.|.
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~  117 (259)
T 3omz_A           83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVT  117 (259)
T ss_dssp             ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEE
T ss_pred             ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEe
Confidence            9999999999999999998762   3333556554

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=97.81  E-value=2.5e-05  Score=83.03  Aligned_cols=77  Identities=19%  Similarity=0.190  Sum_probs=58.6

Q ss_pred             ccccccceeeeEeecCC----CCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         266 AVSSENATVVCRVDSIP----PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P----~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      +..|+.++|.|.+.|.+    .+.|.|++++..+....    ........++.+...+.|.|.+++..|.|.|+|.|.|.
T Consensus       252 ~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~----~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~  327 (444)
T 1igt_B          252 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQ----TQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNK  327 (444)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTT----CBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECT
T ss_pred             eecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcc----cccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcC
Confidence            57899999999999874    35999999998765432    11112233444455678999999999999999999999


Q ss_pred             CCcee
Q psy1672         342 AGIAD  346 (600)
Q Consensus       342 ~G~~~  346 (600)
                      .|...
T Consensus       328 ~~~~~  332 (444)
T 1igt_B          328 DLPAP  332 (444)
T ss_dssp             TCSSC
T ss_pred             CCCCc
Confidence            98763

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=97.81  E-value=2.2e-05  Score=74.36  Aligned_cols=74  Identities=16%  Similarity=0.305  Sum_probs=53.3

Q ss_pred             cccccceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         267 VSSENATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      ..|+.++|.|.+.|. |+ +.|.|+++|+.+....    ..+.....++.+...+.|.|......|.|.|+|.|.|....
T Consensus       122 ~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~----~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          122 MAKDKVSLTCMITDFFPEDITVEWESNGQPAENYK----NTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             GSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEE----ECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             hcCCceEEEEEEeeEECCCCEEEEEECCEeccCcc----cCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence            358999999999985 44 3899999998764321    11122334555566667888877777899999999998754

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=97.81  E-value=3.7e-05  Score=75.43  Aligned_cols=97  Identities=15%  Similarity=0.267  Sum_probs=61.4

Q ss_pred             cccccccccccccccccceeeeEeecCCCC-----eeEEEE--cCeeccC----Cc--ccCccceEEEeeCCceeeeeeE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPA-----AISWYW--NGRLLLN----NT--AFSSYQRIFVIEQGEYERKSSL  321 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p-----~i~W~~--~g~~l~~----~~--~~~~~~~~~~~~~g~~~~~s~L  321 (600)
                      +.+...+..+.+..|+.++|.|.+.+.|.+     .+.|++  +++.+..    ..  ......++.....+   ..+.|
T Consensus       122 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~L  198 (256)
T 1nqb_A          122 IELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSG---TDFTL  198 (256)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET---TEEEE
T ss_pred             ccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccC---CEEEE
Confidence            334444566778899999999999988865     999999  5543310    00  00001222222111   23579


Q ss_pred             EEecCCCCCCeEEEEEEecCCCce-eEEEEEEEE
Q psy1672         322 VLTNAQESDSGRFYCVAENRAGIA-DANFTLQVT  354 (600)
Q Consensus       322 ~I~~v~~~d~G~Y~C~a~N~~G~~-~~~v~L~V~  354 (600)
                      .|.+++.+|+|.|+|.|.|..+.. .....|.|.
T Consensus       199 ~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  232 (256)
T 1nqb_A          199 KISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK  232 (256)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence            999999999999999999864322 223455553

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=97.80  E-value=1.3e-05  Score=77.28  Aligned_cols=82  Identities=16%  Similarity=0.265  Sum_probs=53.5

Q ss_pred             cccccccceeeeEeecC-CCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         265 EAVSSENATVVCRVDSI-PPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      .+..|+.++|.|.+.|. |.+ .|.|++++..+....    .....  ..+.+...+.|.|..+...| |.|+|.|.|..
T Consensus       132 ~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~----~~~~~--~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~  204 (227)
T 1mju_H          132 GDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHT----FPAVL--QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPA  204 (227)
T ss_dssp             ------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE----CCCEE--ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGG
T ss_pred             cccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEE----CCcee--cCCeEEEEEEEEEchhhcCC-CeEEEEEEECC
Confidence            35679999999999975 766 999999887542111    11111  22445556789999998878 99999999987


Q ss_pred             CceeEEEEEEE
Q psy1672         343 GIADANFTLQV  353 (600)
Q Consensus       343 G~~~~~v~L~V  353 (600)
                      +.....+.+.+
T Consensus       205 ~~~~~~~~~~~  215 (227)
T 1mju_H          205 SSTKVDKKIEP  215 (227)
T ss_dssp             GTEEEEEECCC
T ss_pred             CCcceEEEeCC
Confidence            76555444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	600
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-27
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-20
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	6e-13
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	4e-12
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	5e-12
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-12
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-10
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-10
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	6e-10
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	8e-10
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-09
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-09
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-09
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	8e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-04
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-08
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-08
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-08
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-08
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	4e-08
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	4e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	5e-08
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	5e-08
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	6e-08
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	6e-08
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	9e-08
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-07
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-07
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-07
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-07
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	7e-07
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	1e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	1e-06
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	3e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	8e-06
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	9e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	5e-05
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	5e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	2e-04
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	2e-04
d1neua_	119	b.1.1.1 (A:) Myelin membrane adhesion molecule P0	2e-04
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	2e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-04
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	3e-04
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	3e-04
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	4e-04
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	4e-04
d1ncna_	110	b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human	5e-04
d2nxyb1	97	b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Ho	7e-04
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	8e-04
d1kcvh2	101	b.1.1.2 (H:117-217) Immunoglobulin heavy chain gam	0.001
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	0.001
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	0.001
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	0.002
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	0.002
d1q0xl2	102	b.1.1.2 (L:108-212) Immunoglobulin light chain lam	0.002
d1l6xa2	102	b.1.1.2 (A:342-443) Immunoglobulin heavy chain gam	0.003
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	0.003

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 3e-27
 Identities = 76/282 (26%), Positives = 118/282 (41%), Gaps = 49/282 (17%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRR----- 71
           CP  C+C +   K    C  + L  +P       +Q + + GN +  +P  +FR      
Sbjct: 2   CPGACVC-YNEPKVTTSCPQQGLQAVP-VGIPAASQRIFLHGNRISHVPAASFRACRNLT 59

Query: 72  ------------------------------------------AGLLNLQKLFLARCHIGQ 89
                                                      GL  L  L L RC + +
Sbjct: 60  ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119

Query: 90  IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
           +  G   GL  L  + L DN L ++P  TF+ +  L  L L  N IS + + AF+ +  L
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 150 VKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC 209
            +L + ++R+ H+ P AF     L ++ L  N LS  P  ++ PL  L  + L+DNPWVC
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

Query: 210 DCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDF 251
           DC  R +  WL   +    +  C+ P+RL+G+    L A+D 
Sbjct: 240 DCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.7 bits (221), Expect = 2e-20
 Identities = 52/228 (22%), Positives = 84/228 (36%), Gaps = 35/228 (15%)

Query: 16  SCPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNNLQILPKEAFRRAGL 74
            CP  C C  +     ++C D  L  +P+  P    T +LD+  N +  +    F    L
Sbjct: 3   VCPFRCQCHLRV----VQCSDLGLEKVPKDLPPD--TALLDLQNNKITEIKDGDF--KNL 54

Query: 75  LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
            NL  L L    I +I  GA   L  L  + LS N L  +P    ++++ LR        
Sbjct: 55  KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITK 114

Query: 135 I-----------------------SKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAK 171
           +                       S IE GAFQ +  L  + ++++ +  I         
Sbjct: 115 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP--- 171

Query: 172 SLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMW 219
           SL  + L+GN+++     S++ L  L  + L  N      N       
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.4 bits (150), Expect = 3e-11
 Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 3/138 (2%)

Query: 103 EIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHI 162
            +  SD  L  +P            L+L  N I++I+ G F+ +  L  L +  +++  I
Sbjct: 14  VVQCSDLGLEKVPKDLPPD---TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 163 SPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLAD 222
           SP AF     LE + L+ N+L   P +  + L +L + E               +M + +
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 223 KKNVPVQPACTGPERLSG 240
               P++ +        G
Sbjct: 131 LGTNPLKSSGIENGAFQG 148

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.9 bits (141), Expect = 4e-10
 Identities = 39/207 (18%), Positives = 73/207 (35%), Gaps = 33/207 (15%)

Query: 30  QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ 89
           + +      L  +PE     L + L +  N +  + K  F     + + +L         
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQE-LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 90  IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL 149
           I++GA  G+  L  I ++D  +T+IP     S   L +L+L  N I+K++  + + +  L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNL 197

Query: 150 VKLDMSESRLE-----------------------HISPEAFTGAKSLESIKLNGNRLSHF 186
            KL +S + +                           P      K ++ + L+ N +S  
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 257

Query: 187 PVRSVEP------LLKLMMIELHDNPW 207
                 P            + L  NP 
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.5 bits (127), Expect = 2e-08
 Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 4/141 (2%)

Query: 99  TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
            +   +DL +N +T I    F++++ L  L L  N ISKI  GAF  +  L +L +S+++
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSH--FPVRSVEPLLKLMMIELHDNPWVCD--CNMR 214
           L+ +  +     + L   +    ++    F   +   +++L    L  +         M+
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 215 SIKMWLADKKNVPVQPACTGP 235
            +        N+   P    P
Sbjct: 151 KLSYIRIADTNITTIPQGLPP 171

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 12/157 (7%)

Query: 30  QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ 89
            ++   D  + TIP+     LT+ L + GN +  +   + +  GL NL KL L+   I  
Sbjct: 153 SYIRIADTNITTIPQGLPPSLTE-LHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISA 209

Query: 90  IDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFV--- 146
           +D+G+L    +L E+ L++N L  +P       ++++ + L  N IS I    F      
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 147 ---PGLVKLDMSESRLEH--ISPEAFTGAKSLESIKL 178
                   + +  + +++  I P  F       +++L
Sbjct: 269 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 27/145 (18%), Positives = 63/145 (43%), Gaps = 12/145 (8%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
             + ++  N+  +P+         +L +L L    I ++D+ +L GL NL ++ LS N +
Sbjct: 153 SYIRIADTNITTIPQGLPP-----SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGA- 170
           +++ + +  +   LR+L+L  N + K+  G       +  + +  + +  I    F    
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 171 -----KSLESIKLNGNRLSHFPVRS 190
                 S   + L  N + ++ ++ 
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQP 291

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 22/117 (18%)

Query: 16  SCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLL 75
           +  +  +      ++     +K +       + +  QV+ +  NN+  +    F   G  
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 76  NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLT--SIPSLTFQSVRFLRDLNL 130
                                   +   + L  N +    I   TF+ V     + L
Sbjct: 269 TK--------------------KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.8 bits (216), Expect = 6e-20
 Identities = 51/253 (20%), Positives = 87/253 (34%), Gaps = 29/253 (11%)

Query: 21  CICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKL 80
           C          + C  + L  +P     + T +L +S N L               L +L
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATL--MPYTRLTQL 60

Query: 81  FLARCHIGQIDSGALDGLTNLIEIDLSDNL-----------------------LTSIPSL 117
            L R  + ++       L  L  +DLS N                        LTS+P  
Sbjct: 61  NLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 118 TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIK 177
             + +  L++L L  N +  +  G     P L KL ++ + L  +      G ++L+++ 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 178 LNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPER 237
           L  N L   P +       L    LH NPW+C+C +   + WL D              +
Sbjct: 179 LQENSLYTIP-KGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVK 237

Query: 238 LSGKVFSDLHADD 250
                 + +  D+
Sbjct: 238 AMTSNVASVQCDN 250

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 6e-13
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYER 317
           +M+ R     ++      C     P   + W  NG+          Y+           +
Sbjct: 9   KMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR--------NQ 60

Query: 318 KSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
             SL++ +   SD G + CV EN  G  +  + L V
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.7 bits (146), Expect = 4e-12
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 255 PEIRMDSRYVEAVSS--ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           P ++     V A ++  ++ T+VC  D  P   +SW  +G  + N               
Sbjct: 4   PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF----- 58

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
              +  S L + N  ++D   + C+AEN+AG  DA+  L+V  +
Sbjct: 59  --SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 5e-12
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 5/105 (4%)

Query: 254 KPEIRMD-SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           +P ++         V   +   VC+V S     I W  +     +         + V++ 
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63

Query: 313 G----EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                  +    L + N    D+G + C+A N  GI+  +  L V
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 62.5 bits (150), Expect = 6e-12
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 1/159 (0%)

Query: 99  TNLIEIDLSDNLLTS-IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES 157
            +  E+ L+DN L        F  +  L  L L RN ++ IE  AF+    + +L + E+
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 158 RLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIK 217
           +++ IS + F G   L+++ L  N++S     S E L  L  + L  NP+ C+C++    
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA 148

Query: 218 MWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACKPE 256
            WL  K        C  P ++      DL   +F C  E
Sbjct: 149 EWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE 187

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 58.4 bits (140), Expect = 2e-11
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 9/104 (8%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           +P   +     E    ++A   CRV +  P  ++W+ +             ++     + 
Sbjct: 1   QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKD---------DRELKQSVKYMKR 51

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRG 357
                  L +   +  D G +   A+N  G  +    L VT   
Sbjct: 52  YNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS 95

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 1e-10
 Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 9/102 (8%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P+I       +  + E+  +  +V    P   +W    + +  +                
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS---- 56

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
                 L +  A++   G +  + EN+ G   A   L V  +
Sbjct: 57  -----KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 93

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 14/90 (15%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           +     ++ T+ C+V  +P   + W  N +         S  R  V +         LV+
Sbjct: 13  IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKP-------LSGGRATVTDS-------GLVI 58

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
              +  D G + C A N  G       +QV
Sbjct: 59  KGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 6e-10
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 2/92 (2%)

Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
            AV   +  +   VD  P  ++ W +NG +L   +   +        +        L L 
Sbjct: 11  TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRH--GCLRLN 68

Query: 325 NAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
                ++G +  +A N  G A A+        
Sbjct: 69  QPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 8e-10
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
              S  +  +   V   P  A+ W++NG +L  +     Y    +      E    L L 
Sbjct: 12  SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESK----YICTKIHVTNHTEYHGCLQLD 67

Query: 325 NAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
           N    ++G +  +A+N  G  +   +      
Sbjct: 68  NPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 16/100 (16%)

Query: 255 PEIRMDS-RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           P I+        A++ +  T+ C     P   I W                         
Sbjct: 5   PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKL---------------DGSQTSK 49

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
               +  L + N    D G + C AEN  G       + +
Sbjct: 50  WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 2e-09
 Identities = 16/124 (12%), Positives = 34/124 (27%), Gaps = 25/124 (20%)

Query: 255 PEIRMD-----SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFV 309
           P+I +D        +  V+     +   +   P   + W           A  +      
Sbjct: 5   PKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPED 64

Query: 310 IEQGEY--------------------ERKSSLVLTNAQESDSGRFYCVAENRAGIADANF 349
               +                     + +S   +  A++ D G +    +N  G    N 
Sbjct: 65  TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNL 124

Query: 350 TLQV 353
           T++V
Sbjct: 125 TVKV 128

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 2e-09
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           +     E+A   C  D  P   ++W   G++L  +         +           +  +
Sbjct: 9   MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS---------TFEI 59

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQV 353
           ++ Q SD G +  V EN  G  +A FTL +
Sbjct: 60  SSVQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 3e-09
 Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 8/103 (7%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P+I    +        +A    RV   P     WY NG  +          RI+     
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIER------SDRIYWYWPE 57

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
           +      LV+ +    DS      A N AG   ++  L V  +
Sbjct: 58  DN--VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 51.4 bits (122), Expect = 8e-09
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 8/100 (8%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           KP        +E V    A   C+V+  P   + W+ +      +      +   +    
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKD------DNPVKESRHFQIDYDE 61

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
           E     SL ++     D  ++ C A N  G A     L V
Sbjct: 62  EG--NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 1e-08
 Identities = 37/209 (17%), Positives = 69/209 (33%), Gaps = 32/209 (15%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
                +       + +   +  +  I           L ++GN L+ +       A L N
Sbjct: 187 VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT----LASLTN 242

Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVR------------- 123
           L  L LA   I  +    L GLT L E+ L  N +++I  L   +               
Sbjct: 243 LTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300

Query: 124 -------FLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESI 176
                   L  L L  N IS I       +  L +L  + +++      +     ++  +
Sbjct: 301 SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS--DVSSLANLTNINWL 356

Query: 177 KLNGNRLSHFPVRSVEPLLKLMMIELHDN 205
               N++S      +  L ++  + L+D 
Sbjct: 357 SAGHNQISDLT--PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 46  PESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEID 105
            ++ L + +        +   +   +  L  +  L   R  I  ID   ++ L NL +I+
Sbjct: 17  TDTALAEKMKTVLGKTNV--TDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQIN 72

Query: 106 LSDNLLTSIPSL 117
            S+N LT I  L
Sbjct: 73  FSNNQLTDITPL 84

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           P ++           E A +VC+ +S+PP    +WY             S  R FV    
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 314 EYERKSSLVLTNAQESD-SGRFYCVAENRAGIADANFTLQV 353
                S L + N       G++ C   +  G   A  TL+V
Sbjct: 63  GR---SELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.8 bits (120), Expect = 2e-08
 Identities = 21/101 (20%), Positives = 33/101 (32%), Gaps = 2/101 (1%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           P     S          A + C   D  PP+  SW+ +G  +L        +        
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTAD-AKKTRAFMNSSFT 61

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
              +   L+       DSG +YC A+N  G A  +    + 
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 5/92 (5%)

Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
           E        +   V   PP  + W  N           S        Q     +  L+  
Sbjct: 13  EPELRLEHCIEFVVRGNPPPTLHWLHN-----GQPLRESKIIHVEYYQEGEISEGCLLFN 67

Query: 325 NAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
                ++G +  +A+N  G A+          
Sbjct: 68  KPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 99

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 3e-08
 Identities = 24/145 (16%), Positives = 51/145 (35%), Gaps = 3/145 (2%)

Query: 99  TNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR 158
                +  + +           +          +  +  +E    + +  L  L + +S 
Sbjct: 8   HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKM 218
           L  ++P+AF     L  + L+ N L     ++V+ L    ++ L  NP  C C +R ++ 
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELV-LSGNPLHCSCALRWLQR 126

Query: 219 WLADKKNV--PVQPACTGPERLSGK 241
           W  +        +  C G   L+  
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLAHM 151

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 8e-05
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEA-PESELTQVLDMSGNN-LQILPKEAFRRAGL 74
           CP  C      G   + C     +      P +E    L +     LQ L     R  GL
Sbjct: 1   CPDACCPH---GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR--GL 55

Query: 75  LNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNP 134
             L+ L + +  +  +   A      L  ++LS N L S+   T Q +   ++L L+ NP
Sbjct: 56  GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSL-QELVLSGNP 114

Query: 135 I 135
           +
Sbjct: 115 L 115

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 4e-08
 Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 5/105 (4%)

Query: 254 KPEI-RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQR---IFV 309
           +P I    +  +E        ++C V         W WNG ++  +              
Sbjct: 1   RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 310 IEQGEYERKSSLVLTNAQESDSGRFY-CVAENRAGIADANFTLQV 353
             +      + L ++  +       + C A+N  GI  A   L  
Sbjct: 61  ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 4e-08
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 10/108 (9%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           K + R +   + + ++E     C ++ +     I+WY +        +     RI     
Sbjct: 2   KCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSK--TPVSTEQASRI----- 54

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTYRGVGL 360
             ++ K  L    A+  DSG +YCV  N +       + +       L
Sbjct: 55  --HQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNL 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.9 bits (125), Expect = 5e-08
 Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 11/110 (10%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
             +      +                         + L++S N L  LP      A    
Sbjct: 252 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP------ALPPR 305

Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLR 126
           L++L  +  H+ ++     +   NL ++ +  N L   P +  +SV  LR
Sbjct: 306 LERLIASFNHLAEVP----ELPQNLKQLHVEYNPLREFPDI-PESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 106 LSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPE 165
              N  ++           L +LN++ N + ++        P L +L  S + L  +   
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPEL 322

Query: 166 AFTGAKSLESIKLNGNRLSHFP 187
                ++L+ + +  N L  FP
Sbjct: 323 P----QNLKQLHVEYNPLREFP 340

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 12/85 (14%), Positives = 34/85 (40%), Gaps = 11/85 (12%)

Query: 33  ECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDS 92
           E R+  +  + +  + +    L+++   L  LP+         +L+ L  +   + ++  
Sbjct: 23  EQREMAVSRLRDCLDRQAH-ELELNNLGLSSLPEL------PPHLESLVASCNSLTELPE 75

Query: 93  GALDGLTNLIEIDLSDNLLTSIPSL 117
                  +L  + + +N L ++  L
Sbjct: 76  ----LPQSLKSLLVDNNNLKALSDL 96

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.7 bits (115), Expect = 5e-08
 Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 13/100 (13%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           +P+        EA    +    C     P  A+ W  +G+ L +                
Sbjct: 1   QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE------ 54

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                  L  +     DSG + CVAEN+ G   A+  L V
Sbjct: 55  -------LRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 5e-08
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           VE  + + AT  C       A    +  G  + +                     +S  +
Sbjct: 11  VEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI------ASFNV 64

Query: 324 TNAQESDSGRFYCVAENRAGIADANF-TLQV 353
            N  + D+G++ C+     G+  +N+  L V
Sbjct: 65  VNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.7 bits (117), Expect = 6e-08
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 14/105 (13%)

Query: 264 VEAVSSENATVVCRVDSIPPAA--------------ISWYWNGRLLLNNTAFSSYQRIFV 309
           + A+  + A + CR+     A               +  Y NG+      A     R  +
Sbjct: 12  IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTEL 71

Query: 310 IEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           +++   E K +L + N + SD G + C   + +   +A   L+V 
Sbjct: 72  LKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 116

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 6e-08
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 3/100 (3%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           P     +    A     A + C      PP+  +W+ +G ++  N   +           
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL- 61

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                  LV      SD+G + C A N  G    +  +++
Sbjct: 62  -NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 48.1 bits (113), Expect = 9e-08
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 10/102 (9%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P ++     V    +    + C ++         +       N    ++          
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL-------- 53

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQVT 354
             + + SLV    Q SD G + C AE  AG+A +   + + T
Sbjct: 54  -RKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKT 94

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 9/107 (8%)

Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAA---ISWYWNGRLLLNNTAFSSYQRI 307
           F  +P+        E     + T   RV          + W+    + L++      Q  
Sbjct: 7   FVMRPQD------GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60

Query: 308 FVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
              ++        L +T+AQ + +G + C    +     +NF L V 
Sbjct: 61  DSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 264 VEAVSSENATVVCRVDSIPPAA---ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSS 320
                 E+ T + +V +        I W+    + L + A    Q     E+        
Sbjct: 10  GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFE 69

Query: 321 LVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           + +  A+++ +G + C    +      +F L+V 
Sbjct: 70  MQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 103

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 8/92 (8%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           +     +   + C V+ +    I W  +G                 I   E      L L
Sbjct: 6   LTVSQGQPVKLNCSVEGMEEPDIQWVKDGA-------VVQNLDQLYIPVSEQHWIGFLSL 58

Query: 324 TNAQESDSGRFYCVAENRAGIAD-ANFTLQVT 354
            + + SD+GR++C  E+           L V 
Sbjct: 59  KSVERSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 2/91 (2%)

Query: 261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS- 319
           S+ +  V   N T      ++P   + W      +                +   +  S 
Sbjct: 2   SQQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 320 SLVLTNAQESDSGRFYCVAENRAGIADANFT 350
           SL + N   SD   +   + N          
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITDTMKFFLY 91

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 6e-07
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 32/137 (23%)

Query: 52  QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL 111
           +VL ++  +L +L                              L+ L  +  +DLS N L
Sbjct: 1   RVLHLAHKDLTVLC----------------------------HLEQLLLVTHLDLSHNRL 32

Query: 112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHIS-PEAFTGA 170
            ++P     ++R L  L  + N +  ++      +P L +L +  +RL+  +  +     
Sbjct: 33  RALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSC 89

Query: 171 KSLESIKLNGNRLSHFP 187
             L  + L GN L    
Sbjct: 90  PRLVLLNLQGNSLCQEE 106

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 7e-07
 Identities = 12/101 (11%), Positives = 33/101 (32%), Gaps = 1/101 (0%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           K  +      V+   +E+  + C         + W +          ++S       ++ 
Sbjct: 1   KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            +   S +  ++    D+G + C+     G      ++ +T
Sbjct: 61  TFS-SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 3/101 (2%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P I   ++   A+  E   + C + S PP     +     +L +     Y         E
Sbjct: 7   PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET--ISTE 64

Query: 315 YERKSSLVLTNAQESDSGRFY-CVAENRAGIADANFTLQVT 354
               S+L ++N   +D    Y C A N  G       L+  
Sbjct: 65  EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 105

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 14/100 (14%), Positives = 28/100 (28%), Gaps = 12/100 (12%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
            P   +    + ++  ++ T+ C        A   +            +          G
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVL------RKPAAGSHPSRWAGMG 59

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                  L+L + Q  DSG + C    R      +  + V
Sbjct: 60  RR-----LLLRSVQLHDSGNYSCYRAGRPA-GTVHLLVDV 93

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 10/101 (9%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           K   +      E    E+A +VC V S  P  I W   GR ++               Q 
Sbjct: 1   KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ- 59

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                    +   +++D G + C     A        +QV 
Sbjct: 60  ---------IRGIKKTDEGTYRCEGRILARGEINFKDIQVI 91

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 11/106 (10%)

Query: 57  SGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQID--SGALDGLTNLIEIDLSDNLLTSI 114
             +++    +       +  L  L L+   + ++D  S  +    NL  ++LS N L S 
Sbjct: 49  RRSSMAATLRIIEEN--IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 106

Query: 115 PSLTFQSVRFLRDLNLARNPISKIEKGAFQFV-------PGLVKLD 153
             L       L +L L  N +S   +    ++       P L++LD
Sbjct: 107 RELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 14/141 (9%)

Query: 51  TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL 110
            Q LD+    L+  P              L         +     + +  L+ ++LS+N 
Sbjct: 24  QQALDLK--GLRSDPD----LVAQNIDVVLNRRSSMAATLR-IIEENIPELLSLNLSNNR 76

Query: 111 LTSIPSL--TFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFT 168
           L  +  +    Q    L+ LNL+ N +    +        L +L +  + L     +  T
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Query: 169 GAKSLESI-----KLNGNRLS 184
              ++        +L+G+ L 
Sbjct: 137 YISAIRERFPKLLRLDGHELP 157

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 19/122 (15%)

Query: 251 FACKPEIRMDSRYVEAVSSENATVVCRVDSIPPAA----ISWYW---------------N 291
           FA    I      +E    E A + C+    P       I W                 +
Sbjct: 1   FARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYS 60

Query: 292 GRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTL 351
           G  + ++       R+           +S+ +TN Q SD G + C  +   G+A+    L
Sbjct: 61  GDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 120

Query: 352 QV 353
            V
Sbjct: 121 VV 122

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 8/55 (14%), Positives = 25/55 (45%)

Query: 76  NLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL 130
             +       ++ ++ +    G +  + +D+S   + S+PS   ++++ LR  + 
Sbjct: 178 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 4/101 (3%)

Query: 17  CPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLN 76
             S     ++    W+       I       ++L ++     NNL+ LP + F   G   
Sbjct: 145 RNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFH--GASG 202

Query: 77  LQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSL 117
              L ++R  I  + S  L+ L  L         L  +P+L
Sbjct: 203 PVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 6/56 (10%)

Query: 17 CPS-TCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRR 71
          C    C C  +       C++  +  IP        + L      L+++ K AF  
Sbjct: 1  CHHRICHCSNRV----FLCQESKVTEIPSDLPRNAIE-LRFVLTKLRVIQKGAFSG 51

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 124 FLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRL 183
                    N + ++    F    G V LD+S +R+  +        K L +   +   L
Sbjct: 178 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA--RSTYNL 235

Query: 184 SHFP 187
              P
Sbjct: 236 KKLP 239

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.7 bits (102), Expect = 3e-06
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 11/94 (11%)

Query: 260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKS 319
            + + E  + E  T+ CR  + PPA   W  NG  L                        
Sbjct: 13  HTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYR----------LVAGD 62

Query: 320 SLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQ 352
            ++    +  D+G + CVA N  G       +L+
Sbjct: 63  LVISNPVKAKDAGSYQCVATNARGTVVSREASLR 96

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 5e-06
 Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 15/85 (17%)

Query: 270 ENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE 328
            + T +C   S  P   + W       L +                 +    L + N Q 
Sbjct: 18  ADVTFICTAKSKSPAYTLVWTRLHNGKLPS--------------RAMDFNGILTIRNVQP 63

Query: 329 SDSGRFYCVAENRAGIADANFTLQV 353
           SD+G + C   N   +     TL V
Sbjct: 64  SDAGTYVCTGSNMFAMDQGTATLHV 88

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 7e-06
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 22/94 (23%)

Query: 52  QVLDMSGNNL------QILPKEAFRRAGLLNLQKLFLARCHIGQID----SGALDGLTNL 101
           Q LD+    L      ++LP        L   Q + L  C + +      S AL     L
Sbjct: 5   QSLDIQCEELSDARWAELLPL-------LQQCQVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 102 IEIDLSDNLLT-----SIPSLTFQSVRFLRDLNL 130
            E++L  N L       +          ++ L+L
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 8e-06
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 4/125 (3%)

Query: 91  DSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLV 150
            +          E+DL    +  I +L   ++     ++ + N I K++   F  +  L 
Sbjct: 10  QAAQYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRKLD--GFPLLRRLK 66

Query: 151 KLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLK-LMMIELHDNPWVC 209
            L ++ +R+  I          L  + L  N L           LK L  + +  NP   
Sbjct: 67  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 126

Query: 210 DCNMR 214
             + R
Sbjct: 127 KKHYR 131

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (98), Expect = 9e-06
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 9/100 (9%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
           KP+I   SR ++  +     +       P    +W             S       +   
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVG---------DSGAALAPELLVD 52

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV 353
                +S+   +A+ +DSG +    +N  G  +A F + V
Sbjct: 53  AKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
             A   E   + C V S   A + W+ N             +  + I      +K  L++
Sbjct: 10  TTAYCGERVELECEV-SEDDANVKWFKN-----GEEIIPGPKSRYRIRV--EGKKHILII 61

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVTYR 356
             A ++D+  +  +       A     L V  +
Sbjct: 62  EGATKADAAEYSVMTTGGQSSA----KLSVDLK 90

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 8/94 (8%)

Query: 261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSS 320
           S+ + A + +   + C   S P    +++ NG+         +      I +        
Sbjct: 10  SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGK-------DVNGNPEDRITRHNRTSGKR 62

Query: 321 LVLTNAQESDSGRFYCVAENRAGIADAN-FTLQV 353
           L+       D G + C  +N  G    +   L V
Sbjct: 63  LLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 12/92 (13%), Positives = 26/92 (28%), Gaps = 18/92 (19%)

Query: 269 SENATVVC------RVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLV 322
           + +  +VC      + ++     + WY + +              F   +        L+
Sbjct: 14  AGDGGLVCPYMEFFKNENNELPKLQWYKDCK------PLLLDNIHFSGVKD------RLI 61

Query: 323 LTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           + N  E   G + C A           T  + 
Sbjct: 62  VMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 93

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 13/86 (15%), Positives = 24/86 (27%), Gaps = 6/86 (6%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNG------RLLLNNTAFSSYQRIFVIEQGEYER 317
           V     E AT+ C  +                    L + +   + +         +   
Sbjct: 4   VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63

Query: 318 KSSLVLTNAQESDSGRFYCVAENRAG 343
             S+V+   + SD G + CV      
Sbjct: 64  NLSIVILALRPSDEGTYECVVLKYEK 89

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 17/110 (15%)

Query: 262 RYVEAVSSENATVVCRVDSIPPAAIS-----------------WYWNGRLLLNNTAFSSY 304
           R V        T+ C   S    +                    +   +         ++
Sbjct: 7   REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTF 66

Query: 305 QRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
           +           +  S+V+ N   SD+G F C  +N   I      + + 
Sbjct: 67  KERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLY 116

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 11/107 (10%)

Query: 253 CKPEI---RMDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIF 308
           C  ++   R     + A   +   + C V        ++W                 R  
Sbjct: 1   CDVQLYIKRQSEHSILA--GDPFELECPVKYCANRPHVTWCKLNGTTCVK----LEDRQT 54

Query: 309 VIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADAN-FTLQVT 354
             ++ +      L       +D+G + C A  ++ + +++  TL VT
Sbjct: 55  SWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 50  LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN 109
           L Q LD++G NL     +   R     +      R  + Q  +        +  +DLS++
Sbjct: 1   LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNS 56

Query: 110 LLT--SIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDM 154
           ++   ++  +       L++L+L    +S            LV+L++
Sbjct: 57  VIEVSTLHGI-LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 102

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 2e-04
 Identities = 9/82 (10%), Positives = 19/82 (23%), Gaps = 9/82 (10%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
            +        +   + +   A + W  NG                         K +L +
Sbjct: 16  YQVSKGHKIRLTVEL-ADHDAEVKWLKNG--------QEIQMSGSKYIFESIGAKRTLTI 66

Query: 324 TNAQESDSGRFYCVAENRAGIA 345
           +    +D   + CV        
Sbjct: 67  SQCSLADDAAYQCVVGGEKCST 88

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 12/84 (14%)

Query: 270 ENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES 329
             A + C   S        + N                    +     + +L++ N  E 
Sbjct: 13  GTAELKCSQKSNLARVFWKFQN------------GVLKAESPKYGLMGRKNLLIFNLSEG 60

Query: 330 DSGRFYCVAENRAGIADANFTLQV 353
           DSG + C++E R         +  
Sbjct: 61  DSGVYQCLSEERVKNKTVFQVVAK 84

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 10/100 (10%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE 314
           P +++          ++  + C+V+        W             S            
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSL------ 56

Query: 315 YERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                  +     + +     C AEN  G A+ +  + V+
Sbjct: 57  ----GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 92

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 8/102 (7%), Positives = 24/102 (23%), Gaps = 11/102 (10%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
             + +          +  T+ C+V    P A ++                 + +      
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVL----------LRGEKELKREPAV 54

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
               + +  +   ++    +F C  E              + 
Sbjct: 55  GEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSA 96

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 8/101 (7%), Positives = 27/101 (26%), Gaps = 1/101 (0%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQG 313
              +      V    +    + C         + W ++         +++       E  
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKIT-ASYEDR 62

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT 354
                + +   +    D+G + C+     G +     +++ 
Sbjct: 63  VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 264 VEAVSSENATVVCRVDSIPPAAIS---WYWNGRLLLNNTAFSSYQRIFVIEQGEY----- 315
           ++A  +E A + C+  +    ++S    +W  +  L        +  F     +Y     
Sbjct: 4   IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTS 63

Query: 316 --ERKSSLVLTNAQESDSGRFYCVAENR 341
                 +L L N Q  D G + C+  ++
Sbjct: 64  FDSDSWTLRLHNLQIKDKGLYQCIIHHK 91

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 7e-04
 Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 8/86 (9%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYW--------NGRLLLNNTAFSSYQRIFVIEQGEY 315
           V     +   + C           W          N    L         R         
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 316 ERKSSLVLTNAQESDSGRFYCVAENR 341
           +    L++ N +  DS  + C  E++
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQ 89

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 8e-04
 Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 14/102 (13%)

Query: 260 DSRYVEAVSSENATVVCRVDSIPPA--AISWYWNGRLLL----NNTAFSSYQRIFVIEQG 313
           DS  V         +      +      + W     L+         F       ++  G
Sbjct: 1   DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 60

Query: 314 EYERKSSLVLTNAQESDSGRFYCVAENRAG--IADANFTLQV 353
                  L + N    DSG +     +  G  I +    L++
Sbjct: 61  ------DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRI 96

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 5/79 (6%)

Query: 265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLT 324
              ++   T+ C V    P  ++  WN        +        V++ G Y   S+  + 
Sbjct: 16  ATAAASAVTLGCLVKGYFPEPVTVAWNE----GALSSGVLTVSAVLQSGLYTLSSNTTVA 71

Query: 325 NAQESDSGRFYCVAENRAG 343
            +    S    C+  +   
Sbjct: 72  -SGTWPSASVTCLVAHPKS 89

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 12/106 (11%), Positives = 29/106 (27%), Gaps = 8/106 (7%)

Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEY 315
           E+ +++   +     N  ++     +   A +WY      ++           +   G+ 
Sbjct: 1   EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60

Query: 316 ERKS-------SLVLTNAQESDSGRFYC-VAENRAGIADANFTLQV 353
                      SL+       D G +   + +       A     V
Sbjct: 61  YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 13/104 (12%), Positives = 30/104 (28%), Gaps = 10/104 (9%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVD---SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
            ++ +  +       ++ T+ CRV     +    +  +     L        Y+      
Sbjct: 3   RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETL-------HYETFGKAA 55

Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
               E  ++   T  +E     F C+A         N   + + 
Sbjct: 56  PAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSA 99

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 6/99 (6%)

Query: 256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEY 315
           ++ +     E    E+   +C+V          +++      +        ++  +    
Sbjct: 2   QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS-- 59

Query: 316 ERKSSLVLTNAQESDSGRFYCVAENRAGIAD-ANFTLQV 353
              S+L + NA   D+G + CV     G    A   +++
Sbjct: 60  ---STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 95

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 12/104 (11%), Positives = 21/104 (20%), Gaps = 24/104 (23%)

Query: 254 KPEI--RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIE 311
            P +  R          +   T +C+    P   +    +G                   
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT------------------ 43

Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVTY 355
                               G + C A +  G      T+ V  
Sbjct: 44  ----FPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 83

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAA--ISWYWNGRLLLNNTAFSSYQRIFVIEQ 312
           P + +     E +S+  AT+VC +    P    + W  +G  +   TA     +      
Sbjct: 6   PTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPV---TAGMETTQPSKQSN 62

Query: 313 GEYERKSSLVLTNAQESDSGRFYCVAENRA 342
            +Y   S L LT         + C   +  
Sbjct: 63  NKYMASSYLTLTARAWERHSSYSCQVTHEG 92

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAA--ISWYWNGRLLLNNTAFSSYQRIFVIE 311
           +P++       + ++    ++ C V    P+   + W  NG+   N              
Sbjct: 4   EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLD----S 59

Query: 312 QGEYERKSSLVLTNAQESDSGRFYCVAENRA 342
            G +   S L +  ++      F C   + A
Sbjct: 60  DGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA 90

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 20/91 (21%), Positives = 25/91 (27%), Gaps = 14/91 (15%)

Query: 264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVL 323
           VE    E A     + S P     W                      E  E  +K  L+L
Sbjct: 11  VEVFVGETAHFEIEL-SEPDVHGQWKLK---------GQPLTASPDCEIIEDGKKHILIL 60

Query: 324 TNAQESDSGRFYCVAENRAGIADANFTLQVT 354
            N Q   +G     A N    A     L+V 
Sbjct: 61  HNCQLGMTGEVSFQAANAKSAA----NLKVK 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	600
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.96
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.95
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.85
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.72
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.57
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.56
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.55
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.49
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.45
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.42
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.39
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.38
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.35
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.33
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.32
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.31
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.3
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.3
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.29
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.26
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.22
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.22
d2avga1	110	Cardiac myosin binding protein C, different domain	99.22
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.21
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.2
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.2
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.18
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.17
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.16
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.15
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.14
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.13
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.13
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.13
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.13
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.13
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.12
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.12
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.1
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.09
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.09
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.08
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.08
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.05
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.03
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.01
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.98
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.97
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.96
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.96
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.96
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.95
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.95
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.94
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.93
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.93
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.91
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.89
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.88
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.86
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.84
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.81
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.8
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.77
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.77
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.71
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.7
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.68
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.66
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.65
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.59
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.44
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.43
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.4
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.37
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.34
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.26
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.24
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.03
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.91
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.84
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.78
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.77
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.69
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.61
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.58
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.45
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.41
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.41
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.35
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.35
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.34
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.34
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.29
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.2
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.2
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.19
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.17
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.14
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.12
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.12
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.11
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.1
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.1
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.1
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.1
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.09
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.08
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.08
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.07
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.07
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.05
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.04
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.04
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.04
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.03
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.03
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.02
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.01
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.01
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.0
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	96.97
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.96
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	96.95
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	96.93
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	96.92
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.89
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	96.88
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.87
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	96.87
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	96.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.85
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.8
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	96.8
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	96.77
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	96.76
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	96.75
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	96.75
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	96.74
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	96.69
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	96.69
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	96.67
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	96.66
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	96.66
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	96.64
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	96.64
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.62
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	96.62
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	96.57
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.56
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	96.52
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	96.51
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	96.51
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.49
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.46
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	96.44
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.43
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.38
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	96.37
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	96.34
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	96.31
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	96.28
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.28
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	96.27
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.26
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.22
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	96.22
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	96.21
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	96.21
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	96.2
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	96.16
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	96.15
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	96.03
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	96.02
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	95.99
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.98
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	95.95
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	95.92
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	95.92
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	95.84
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	95.79
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.77
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.73
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	95.7
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	95.67
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	95.65
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	95.65
d1ccza2	78	CD2-binding domain of CD58, second domain {Human (	95.64
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	95.61
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	95.61
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	95.6
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	95.51
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	95.49
d1hnfa2	78	CD2, second domain {Human (Homo sapiens) [TaxId: 9	95.47
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	95.45
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	95.38
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	95.38
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	95.34
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	95.32
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	95.27
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	95.25
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	95.25
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	95.17
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	95.15
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	95.14
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	95.14
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	94.99
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	94.84
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	94.82
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	94.8
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	94.8
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.78
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	94.78
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	94.77
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	94.73
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	94.69
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	94.69
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	94.67
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	94.61
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	94.6
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	94.58
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	94.54
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	94.45
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	94.38
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	94.35
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	94.35
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	94.34
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	94.29
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	94.27
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	94.25
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	94.24
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	94.24
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	94.09
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	94.09
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	94.07
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	94.06
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	94.06
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	94.05
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	94.04
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	94.0
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	93.95
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	93.93
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	93.91
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	93.91
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	93.87
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	93.84
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	93.73
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.71
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	93.7
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	93.69
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	93.65
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	93.63
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	93.62
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.61
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	93.59
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	93.57
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	93.55
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	93.53
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	93.53
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.46
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	93.44
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	93.42
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	93.39
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	93.38
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	93.34
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.24
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	93.22
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.22
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	93.16
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	93.12
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	93.01
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	92.95
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	92.87
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	92.84
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	92.76
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	92.68
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	92.57
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	92.53
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	92.53
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	92.5
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	92.5
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	92.29
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	92.24
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	92.21
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	91.85
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	91.43
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	90.98
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	90.73
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	90.29
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	89.1
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	88.79
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	83.46
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	80.64
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	80.56

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-29  Score=253.31  Aligned_cols=232  Identities=31%  Similarity=0.570  Sum_probs=189.0

Q ss_pred             CCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccC----
Q psy1672          16 SCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQID----   91 (600)
Q Consensus        16 ~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~----   91 (600)
                      +||..|+|.. .....|.|.+.+|+++|..++.. +++|+|++|+|+.++...|.  ++.+|++|++++|.+..+.    
T Consensus         1 ~cp~~C~C~~-~~~~~v~c~~~~L~~iP~~ip~~-~~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~ls~n~l~~i~~~~~   76 (284)
T d1ozna_           1 PCPGACVCYN-EPKVTTSCPQQGLQAVPVGIPAA-SQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAF   76 (284)
T ss_dssp             CCCTTCEEEC-SSSCEEECCSSCCSSCCTTCCTT-CSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTT
T ss_pred             CcCCCCEEcC-CCCeEEEcCCCCCCccCCCCCCC-CCEEECcCCcCCCCCHHHhh--ccccccccccccccccccccccc
Confidence            6999999963 33678999999999999988876 99999999999999998887  8899999999888764332    


Q ss_pred             ---------------------ccccCCCCCccEEEccCCC------------------------CCCCCccccCCCCCCC
Q psy1672          92 ---------------------SGALDGLTNLIEIDLSDNL------------------------LTSIPSLTFQSVRFLR  126 (600)
Q Consensus        92 ---------------------~~~f~~l~~L~~L~Ls~N~------------------------l~~l~~~~f~~l~~L~  126 (600)
                                           +..|.++++|++|+|++|.                        |+.+++..|..+.+|+
T Consensus        77 ~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~  156 (284)
T d1ozna_          77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT  156 (284)
T ss_dssp             TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchh
Confidence                                 3345555566665555554                        5555555666667777


Q ss_pred             EEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCc
Q psy1672         127 DLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNP  206 (600)
Q Consensus       127 ~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~  206 (600)
                      .|+|++|.++.+.+.+|.++++|+.+++++|++..+.+..|.++++|+.|++++|.+..++...|..+.+|+.|++++|+
T Consensus       157 ~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCC
Confidence            77777777777777777777888888888888888878888888899999999999999988889899999999999999


Q ss_pred             CccccccccchhhhcccCCCCCCCCCCCCcccccccccccccccc
Q psy1672         207 WVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDF  251 (600)
Q Consensus       207 ~~C~C~l~~l~~w~~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~~  251 (600)
                      |.|+|.+.|+..|+...........|+.|..++|+.+..++..++
T Consensus       237 l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~l  281 (284)
T d1ozna_         237 WVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL  281 (284)
T ss_dssp             EECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGS
T ss_pred             CCCCccchHHHHHHHhCcCCCCceEeCCchHHcCCccccCCHHHC
Confidence            999999999999999544444678999999999999998888776

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.2e-27  Score=234.18  Aligned_cols=198  Identities=25%  Similarity=0.407  Sum_probs=166.1

Q ss_pred             CCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCC
Q psy1672          19 STCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGL   98 (600)
Q Consensus        19 ~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l   98 (600)
                      ..|.|.+..+..+|+|++.+|+.||..++.. +++|+|++|.|+.++...|.  ++++|+.|+|++|+|+.++.  +..+
T Consensus         2 ~~C~~~~~~~~~~v~C~~~~L~~iP~~lp~~-l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~L~~N~l~~l~~--~~~l   76 (266)
T d1p9ag_           2 PICEVSKVASHLEVNCDKRNLTALPPDLPKD-TTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQV--DGTL   76 (266)
T ss_dssp             CSSEEECSTTCCEEECTTSCCSSCCSCCCTT-CCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEEC--CSCC
T ss_pred             CccEEcccCCCeEEEccCCCCCeeCcCcCcC-CCEEECcCCcCCCcCHHHhh--cccccccccccccccccccc--cccc
Confidence            3699988887889999999999999988766 99999999999999998887  89999999999999998854  5678


Q ss_pred             CCccEEEccCCCCCCCCccccCCCCCCCE------------------------EEccCCCCCccCcccccCCCCcceeeC
Q psy1672          99 TNLIEIDLSDNLLTSIPSLTFQSVRFLRD------------------------LNLARNPISKIEKGAFQFVPGLVKLDM  154 (600)
Q Consensus        99 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~------------------------L~Ls~N~i~~l~~~~~~~l~~L~~L~L  154 (600)
                      ++|++|+|++|+++.++. .+..+++|+.                        |++++|.++.+++..+..+++|+.|++
T Consensus        77 ~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l  155 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (266)
T ss_dssp             TTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccccccccccccccccc-ccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccc
Confidence            888888888887776544 3444445554                        555555555566666777888999999


Q ss_pred             CCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCccccccccchhhhccc
Q psy1672         155 SESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADK  223 (600)
Q Consensus       155 s~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~  223 (600)
                      ++|+|+.+.+..|..+++|+.|+|++|+|+.++.+ +..+.+|+.|+|.+|||.|||++.|+..|+.+.
T Consensus       156 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~-~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~  223 (266)
T d1p9ag_         156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDN  223 (266)
T ss_dssp             TTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             ccccccccCccccccccccceeecccCCCcccChh-HCCCCCCCEEEecCCCCCCCcchHHHHHHHHhc
Confidence            99999999888899999999999999999999865 456789999999999999999999999998743

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=3.2e-25  Score=209.43  Aligned_cols=186  Identities=26%  Similarity=0.485  Sum_probs=127.2

Q ss_pred             CCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCC-CChhhhcccCCCCccEEEeecccCcccCccc
Q psy1672          16 SCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQI-LPKEAFRRAGLLNLQKLFLARCHIGQIDSGA   94 (600)
Q Consensus        16 ~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~-l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~   94 (600)
                      .||..|.|.+    .+|+|++++|++||..++.. +++|+|++|.|+. ++...|.  ++.+|+.|+|++|.+..+.+. 
T Consensus         1 ~CP~~C~C~~----~~v~Cs~~~L~~iP~~lp~~-l~~L~Ls~N~i~~~~~~~~f~--~l~~L~~L~L~~N~i~~~~~~-   72 (192)
T d1w8aa_           1 DCPAMCHCEG----TTVDCTGRGLKEIPRDIPLH-TTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPN-   72 (192)
T ss_dssp             CCCTTSEEET----TEEECTTSCCSSCCSCCCTT-CSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTT-
T ss_pred             CcCCCCEEcC----CEEEEeCCCcCccCCCCCCC-CCEEEeCCCCCcccccccccC--CCceEeeeecccccccccccc-
Confidence            5999999985    57999999999999988765 8888888888864 4455554  455555555555555544444 


Q ss_pred             cCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCC
Q psy1672          95 LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLE  174 (600)
Q Consensus        95 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~  174 (600)
                                             .|..+++|++|+|++|+|+.+++.+|.++++|+.|+|++|+|+.+++++        
T Consensus        73 -----------------------~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~--------  121 (192)
T d1w8aa_          73 -----------------------AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS--------  121 (192)
T ss_dssp             -----------------------TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS--------
T ss_pred             -----------------------ccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHH--------
Confidence                                   4444455555555555555554444444444444444444444443333        


Q ss_pred             EEEcCCCcCCCCCcccccccccccEEEccCCcCccccccccchhhhcccCCCCCCCCCCCCccccccccccccccccCcc
Q psy1672         175 SIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNVPVQPACTGPERLSGKVFSDLHADDFACK  254 (600)
Q Consensus       175 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~~~C~  254 (600)
                                      |..+++|+++++.+|+|.|+|.+.|+..|+...........|..|..+++..+.++...+|.|.
T Consensus       122 ----------------f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~l~~~~l~~L~~n~l~C~  185 (192)
T d1w8aa_         122 ----------------FEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             ----------------STTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTTTTSBGGGSCTTTCCCC
T ss_pred             ----------------hcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChhhcCCEeeecCHhhCcCC
Confidence                            3344566778888999999999999999988443333567899999999999999999999997


Q ss_pred             cc
Q psy1672         255 PE  256 (600)
Q Consensus       255 p~  256 (600)
                      ++
T Consensus       186 ~~  187 (192)
T d1w8aa_         186 SE  187 (192)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=6.4e-21  Score=192.50  Aligned_cols=184  Identities=26%  Similarity=0.454  Sum_probs=144.8

Q ss_pred             CCCCCCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccc
Q psy1672          15 SSCPSTCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGA   94 (600)
Q Consensus        15 ~~Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~   94 (600)
                      ..||..|+|.+    .+++|++.+|+++|..++.. +++|+|++|+|+.+++..|.  ++.+|+.|++++|.+..+.+.+
T Consensus         2 ~~~p~~c~c~~----~~~~C~~~~L~~lP~~l~~~-l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~l~~n~~~~i~~~~   74 (305)
T d1xkua_           2 PVCPFRCQCHL----RVVQCSDLGLEKVPKDLPPD-TALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGA   74 (305)
T ss_dssp             CCCCTTCEEET----TEEECTTSCCCSCCCSCCTT-CCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTT
T ss_pred             CCCCCCCEecC----CEEEecCCCCCccCCCCCCC-CCEEECcCCcCCCcChhHhh--ccccccccccccccccccchhh
Confidence            36999999974    56999999999999988766 99999999999999998887  8999999999999999999999


Q ss_pred             cCCCCCccEEEccCCCCCCCCcccc-----------------------------------------------CCCCCCCE
Q psy1672          95 LDGLTNLIEIDLSDNLLTSIPSLTF-----------------------------------------------QSVRFLRD  127 (600)
Q Consensus        95 f~~l~~L~~L~Ls~N~l~~l~~~~f-----------------------------------------------~~l~~L~~  127 (600)
                      |.++++|++|++++|+|+.++...+                                               ..+++|+.
T Consensus        75 f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~  154 (305)
T d1xkua_          75 FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY  154 (305)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             hhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCc
Confidence            9999999999999998876654321                                               23345666


Q ss_pred             EEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcC
Q psy1672         128 LNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       128 L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~  207 (600)
                      +++++|.+..++...   +++|+.|++++|.+....+..|.++..++.|++++|.+..++...+..+++|+.|++++|.+
T Consensus       155 l~l~~n~l~~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L  231 (305)
T d1xkua_         155 IRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  231 (305)
T ss_dssp             EECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             cccccCCccccCccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccc
Confidence            666666665553322   35666777777777766666777777777777777777777767777777777777777765


Q ss_pred             c
Q psy1672         208 V  208 (600)
Q Consensus       208 ~  208 (600)
                      .
T Consensus       232 ~  232 (305)
T d1xkua_         232 V  232 (305)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.8e-18  Score=164.50  Aligned_cols=184  Identities=20%  Similarity=0.311  Sum_probs=135.9

Q ss_pred             CC-CCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcc-cCccc
Q psy1672          17 CP-STCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQ-IDSGA   94 (600)
Q Consensus        17 Cp-~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~-i~~~~   94 (600)
                      |+ ..|.|..    ..++|.+++++++|..++.. +++|+|++|+|+.++...|.  ++++|++|+|++|.+.. +++.+
T Consensus         1 ~~~~~C~C~~----~~i~c~~~~l~~iP~~l~~~-l~~L~Ls~n~i~~l~~~~f~--~l~~L~~L~ls~n~~~~~i~~~~   73 (242)
T d1xwdc1           1 CHHRICHCSN----RVFLCQESKVTEIPSDLPRN-AIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADV   73 (242)
T ss_dssp             CCCSSEEECS----SEEEEESCSCSSCCSCSCSC-CSEEEEESCCCCEECTTTTT--TCTTCCEEEEESCTTCCEECSSS
T ss_pred             CcCCcCCCcC----CEEEEeCCCCCCcCCCCCCC-CCEEECcCCcCCccChhHhh--ccchhhhhhhccccccceeeccc
Confidence            77 4599983    57999999999999988865 99999999999999999887  89999999999998754 67788


Q ss_pred             cCCCCCccEEEccC-CCCCCCCccccCCCCCCCEEEccCCCCCccCccc-ccCCC-------------------------
Q psy1672          95 LDGLTNLIEIDLSD-NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGA-FQFVP-------------------------  147 (600)
Q Consensus        95 f~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~-~~~l~-------------------------  147 (600)
                      |.+++++++|++.. |++..++...|..+++|+.|++++|.+....... +..+.                         
T Consensus        74 f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~  153 (242)
T d1xwdc1          74 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF  153 (242)
T ss_dssp             EESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccc
Confidence            99999999998764 6888888888999999999999999887553321 11222                         


Q ss_pred             CcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcC
Q psy1672         148 GLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       148 ~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~  207 (600)
                      .++.|++++|++..+....|.....++.+++++|+|+.++...|..+++|+.|++.+|.+
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l  213 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI  213 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCC
T ss_pred             cceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcC
Confidence            344455555555555544443322223334556666666666666666677777666654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.4e-17  Score=149.20  Aligned_cols=141  Identities=20%  Similarity=0.328  Sum_probs=114.6

Q ss_pred             CccEEEccCCCCCCCCccccCCCCCCCEEEccCC-CCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEc
Q psy1672         100 NLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARN-PISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKL  178 (600)
Q Consensus       100 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N-~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L  178 (600)
                      ..+.++.+++.+..++. .+..+++|++|++++| .++.+...+|.++++|+.|+|++|+|+.|.+.+|..+++|+.|+|
T Consensus         9 ~~~~l~c~~~~~~~~p~-~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCTTTT-TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCccCcc-cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            34557777777777765 4666788888888765 488888888888888999999999999988888989999999999


Q ss_pred             CCCcCCCCCcccccccccccEEEccCCcCccccccccchhhhcccCCC-C-CCCCCCCCccccccc
Q psy1672         179 NGNRLSHFPVRSVEPLLKLMMIELHDNPWVCDCNMRSIKMWLADKKNV-P-VQPACTGPERLSGKV  242 (600)
Q Consensus       179 s~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C~C~l~~l~~w~~~~~~~-~-~~~~C~~p~~l~g~~  242 (600)
                      ++|+|+.++...|..+ .|+.|++++|+|.|+|++.|+..|+...... . ....|..|..+.|..
T Consensus        88 s~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p  152 (156)
T d2ifga3          88 SFNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP  152 (156)
T ss_dssp             CSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCC
T ss_pred             cCCCCcccChhhhccc-cccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCC
Confidence            9999999988877765 6999999999999999999999998744332 1 467898888877654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.3e-16  Score=139.31  Aligned_cols=117  Identities=24%  Similarity=0.294  Sum_probs=102.5

Q ss_pred             CCCCCeecccCCceEEEccCCCCCccCCCCCC-CCceEEEeeCC-CCCCCChhhhcccCCCCccEEEeecccCcccCccc
Q psy1672          17 CPSTCICKWKGGKQWMECRDKFLITIPEAPES-ELTQVLDMSGN-NLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGA   94 (600)
Q Consensus        17 Cp~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~-~~l~~L~Ls~n-~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~   94 (600)
                      ||..|.|..   ...++|.+.++.++|..++. ..+++|++++| .|+.|+...|.  ++.+|+.|+|++|+|+.|++.+
T Consensus         1 CP~~C~c~~---~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~--~l~~L~~L~Ls~N~l~~i~~~~   75 (156)
T d2ifga3           1 CPDACCPHG---SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAPDA   75 (156)
T ss_dssp             CCSSSCCSS---SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECTTG
T ss_pred             CcCCCCcCC---CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhc--cccccCcceeeccccCCccccc
Confidence            999999984   35699999999999987653 45899999766 59999999987  8999999999999999999999


Q ss_pred             cCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccC
Q psy1672          95 LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIE  139 (600)
Q Consensus        95 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~  139 (600)
                      |.++++|++|+|++|+|+.++...|..+ .|+.|+|++|++..-.
T Consensus        76 f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C  119 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSC  119 (156)
T ss_dssp             GGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCG
T ss_pred             ccccccccceeccCCCCcccChhhhccc-cccccccCCCcccCCc
Confidence            9999999999999999999999888766 5999999999987543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=7.2e-15  Score=139.46  Aligned_cols=159  Identities=21%  Similarity=0.320  Sum_probs=90.7

Q ss_pred             EEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCC
Q psy1672          31 WMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNL  110 (600)
Q Consensus        31 ~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~  110 (600)
                      .+++.+..++.++..-....+++|+|++|+|+.++.  +.  .+++|+.|++++|+|+.++  .+.++++|+.|++++|.
T Consensus        50 ~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~--~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          50 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTSC
T ss_pred             EEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cc--cCccccccccccccccccc--ccccccccccccccccc
Confidence            455555555555432222336666666666665553  12  4566666666666666553  25566666666666666


Q ss_pred             CCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCccc
Q psy1672         111 LTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRS  190 (600)
Q Consensus       111 l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  190 (600)
                      +..++.  +..++.|+.+++++|.++...  .+..+++|+.+++++|++..+.  .+.++++|+.|+|++|.|+.++  .
T Consensus       124 ~~~~~~--l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~l~--~  195 (210)
T d1h6ta2         124 ISDING--LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISDLR--A  195 (210)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCG--G
T ss_pred             cccccc--ccccccccccccccccccccc--cccccccccccccccccccccc--cccCCCCCCEEECCCCCCCCCh--h
Confidence            655432  455566666666666655432  2445566666666666666552  2556666666666666666553  3


Q ss_pred             ccccccccEEEcc
Q psy1672         191 VEPLLKLMMIELH  203 (600)
Q Consensus       191 ~~~l~~L~~L~l~  203 (600)
                      +..+++|+.|++.
T Consensus       196 l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         196 LAGLKNLDVLELF  208 (210)
T ss_dssp             GTTCTTCSEEEEE
T ss_pred             hcCCCCCCEEEcc
Confidence            5556666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.1e-14  Score=143.33  Aligned_cols=149  Identities=27%  Similarity=0.296  Sum_probs=108.1

Q ss_pred             EEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCC
Q psy1672          32 MECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL  111 (600)
Q Consensus        32 v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l  111 (600)
                      ++..+.+++.++.......|++|+|++|+++.++....   .+++|+.|++++|.+..+....+..+.+|++|++++|.+
T Consensus        60 L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l  136 (266)
T d1p9ag_          60 LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ---TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL  136 (266)
T ss_dssp             EECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTT---TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred             cccccccccccccccccccccccccccccccccccccc---cccccccccccccccceeecccccccccccccccccccc
Confidence            34444444444433222334555555555544433222   455666666666666666666667777777788888888


Q ss_pred             CCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCC
Q psy1672         112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLS  184 (600)
Q Consensus       112 ~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~  184 (600)
                      +.+++..|..+++|+.|++++|+++.+.+..|..+++|+.|+|++|+|+.++.. +..+.+|+.|+|++|.+.
T Consensus       137 ~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~-~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBC
T ss_pred             ceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChh-HCCCCCCCEEEecCCCCC
Confidence            888888888899999999999999999999999999999999999999998654 457899999999999775

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=2.1e-14  Score=134.90  Aligned_cols=145  Identities=21%  Similarity=0.376  Sum_probs=111.7

Q ss_pred             CceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEE
Q psy1672          50 LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLN  129 (600)
Q Consensus        50 ~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  129 (600)
                      .++.|++++|.++.+..  +.  .+++|++|+|++|+++.+.+  |.++++|++|++++|.+..++.  +.+++.|+.|+
T Consensus        41 ~l~~L~l~~~~i~~l~~--l~--~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~  112 (199)
T d2omxa2          41 QVTTLQADRLGIKSIDG--VE--YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  112 (199)
T ss_dssp             TCCEEECTTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred             CCCEEECCCCCCCCccc--cc--cCCCcCcCccccccccCccc--ccCCcccccccccccccccccc--ccccccccccc
Confidence            37888888888887753  22  57888888888888887754  7888888888888888887764  67788888888


Q ss_pred             ccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         130 LARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       130 Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      +++|.+..+.  .+..+++|+.|++++|++..+  ..+..+++|+.|++.+|+++.++  .+..+++|+.|++++|++.
T Consensus       113 l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         113 LFNNQITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--ccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCCc--cccCCCCCCEEECCCCCCC
Confidence            8888777653  366788888888888888776  34677888888888888888775  4677788888888888753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.57  E-value=4.7e-15  Score=138.66  Aligned_cols=107  Identities=24%  Similarity=0.324  Sum_probs=90.0

Q ss_pred             cEEEeecccCcccCccccCCCCCccEEEccCCCCCC-CCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCC
Q psy1672          78 QKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTS-IPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSE  156 (600)
Q Consensus        78 ~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~  156 (600)
                      +.++.++++++.|+.+.+   .++++|+|++|.|+. ++...|..+++|+.|+|++|.+..+.+..|..+++|+.|+|++
T Consensus        11 ~~v~Cs~~~L~~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            345555556665544321   467888888888875 6677788899999999999999999999999999999999999


Q ss_pred             CcCcccChhhhcCCCCCCEEEcCCCcCCCCC
Q psy1672         157 SRLEHISPEAFTGAKSLESIKLNGNRLSHFP  187 (600)
Q Consensus       157 n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~  187 (600)
                      |+|+.+++++|.++++|+.|+|++|+|+.++
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~  118 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVM  118 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccC
Confidence            9999999999999999999999999998875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=3.4e-14  Score=142.43  Aligned_cols=172  Identities=23%  Similarity=0.355  Sum_probs=95.5

Q ss_pred             eEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccC--cccCccccCCCCCccEEEcc
Q psy1672          30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHI--GQIDSGALDGLTNLIEIDLS  107 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l--~~i~~~~f~~l~~L~~L~Ls  107 (600)
                      ..+++.+.+++.+|...... ++.|++.+|.+..++...|.  ....+..+.+..|..  .......|..+++|++++++
T Consensus        82 ~~L~l~~n~l~~l~~~~~~~-l~~L~~~~n~l~~l~~~~~~--~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~  158 (305)
T d1xkua_          82 ERLYLSKNQLKELPEKMPKT-LQELRVHENEITKVRKSVFN--GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  158 (305)
T ss_dssp             CEEECCSSCCSBCCSSCCTT-CCEEECCSSCCCBBCHHHHT--TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             CEecccCCccCcCccchhhh-hhhhhccccchhhhhhhhhh--ccccccccccccccccccCCCccccccccccCccccc
Confidence            34555555555555544443 55566666655555544443  333334444433322  11223345556666666666


Q ss_pred             CCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCC
Q psy1672         108 DNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFP  187 (600)
Q Consensus       108 ~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~  187 (600)
                      +|.++.++...   .++|+.|++++|.+....+..|..++.++.|++++|.+..+.+..+.++++|+.|+|++|.|+.++
T Consensus       159 ~n~l~~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp  235 (305)
T d1xkua_         159 DTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP  235 (305)
T ss_dssp             SSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC
T ss_pred             cCCccccCccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccc
Confidence            66666665432   345666666666666555555666666666666666666666666666666666666666666664


Q ss_pred             cccccccccccEEEccCCcCc
Q psy1672         188 VRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       188 ~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      . .|..+++|+.|++++|.+.
T Consensus       236 ~-~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         236 G-GLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             T-TTTTCSSCCEEECCSSCCC
T ss_pred             c-ccccccCCCEEECCCCccC
Confidence            2 4555666666666666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.5e-14  Score=142.01  Aligned_cols=174  Identities=22%  Similarity=0.275  Sum_probs=145.7

Q ss_pred             ccCCCCCccCCCCCC--CCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCC
Q psy1672          34 CRDKFLITIPEAPES--ELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLL  111 (600)
Q Consensus        34 C~~~~L~~ip~~~~~--~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l  111 (600)
                      .....+..++.....  ..+++|++++|.+..++...+.  .+.+|+.+++++|.|+.+++.+|..+++|++|+|++|+|
T Consensus        88 ~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_          88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR--GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccccchhhcccccCCEEecCCcccccccccccc--hhcccchhhhccccccccChhHhccccchhhcccccCcc
Confidence            345556666543222  4599999999999999888886  789999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccc
Q psy1672         112 TSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSV  191 (600)
Q Consensus       112 ~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  191 (600)
                      +.+++..|.++++|+.|++++|.++.+.+..|..+++|+.|++++|.+..+.+..|..+.+|+.|+|++|.+.-.-. ..
T Consensus       166 ~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~-~~  244 (284)
T d1ozna_         166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-AR  244 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GH
T ss_pred             cccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc-ch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998874211 11


Q ss_pred             cccccccEEEccCCcCccc
Q psy1672         192 EPLLKLMMIELHDNPWVCD  210 (600)
Q Consensus       192 ~~l~~L~~L~l~~N~~~C~  210 (600)
                      .-...++.+....+.+.|.
T Consensus       245 ~l~~~l~~~~~~~~~~~C~  263 (284)
T d1ozna_         245 PLWAWLQKFRGSSSEVPCS  263 (284)
T ss_dssp             HHHHHHHHCCSEECCCBEE
T ss_pred             HHHHHHHhCcCCCCceEeC
Confidence            1112344555566777774

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=3e-14  Score=133.89  Aligned_cols=158  Identities=22%  Similarity=0.336  Sum_probs=134.3

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -+.+++.+.+++.+...-...++++|++++|+|+.++.  +.  ++++|+.|++++|.+..++.  +.++++|+.|++++
T Consensus        42 l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~--~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~  115 (199)
T d2omxa2          42 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN  115 (199)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             CCEEECCCCCCCCccccccCCCcCcCccccccccCccc--cc--CCcccccccccccccccccc--cccccccccccccc
Confidence            45788888888887653334559999999999998875  44  79999999999999988864  88999999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      |.+..+..  +..+++|+.|++++|.+..++  .+..+++|+.|++.+|+++.+.  .+.++++|+.|++++|+++.++ 
T Consensus       116 ~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i~-  188 (199)
T d2omxa2         116 NQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDIS-  188 (199)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG-
T ss_pred             cccccccc--cchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCCc-
Confidence            99887754  778999999999999998763  4788999999999999999884  4889999999999999999885 


Q ss_pred             ccccccccccEE
Q psy1672         189 RSVEPLLKLMMI  200 (600)
Q Consensus       189 ~~~~~l~~L~~L  200 (600)
                       .+..+++|+.|
T Consensus       189 -~l~~L~~L~~L  199 (199)
T d2omxa2         189 -VLAKLTNLESL  199 (199)
T ss_dssp             -GGGGCTTCSEE
T ss_pred             -cccCCCCCCcC
Confidence             47778888765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.3e-14  Score=131.69  Aligned_cols=107  Identities=16%  Similarity=0.199  Sum_probs=50.7

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      +++|+|++|+|+.|+. .+.  .+.+|+.|+|++|.|+.++  .|..+++|++|+|++|.|+.+++..+..+++|+.|+|
T Consensus        20 lr~L~L~~n~I~~i~~-~~~--~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          20 DRELDLRGYKIPVIEN-LGA--TLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             CEEEECTTSCCCSCCC-GGG--GTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcEEECCCCCCCccCc-ccc--ccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            4555555555555542 222  3455555555555555442  1445555555555555555554444444455555555


Q ss_pred             cCCCCCccCc-ccccCCCCcceeeCCCCcCccc
Q psy1672         131 ARNPISKIEK-GAFQFVPGLVKLDMSESRLEHI  162 (600)
Q Consensus       131 s~N~i~~l~~-~~~~~l~~L~~L~Ls~n~l~~i  162 (600)
                      ++|.++.+.. ..+..+++|+.|++++|.+...
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             ccccccccccccccccccccchhhcCCCccccc
Confidence            5555444422 2334444444444444444433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.4e-14  Score=131.58  Aligned_cols=127  Identities=21%  Similarity=0.281  Sum_probs=105.2

Q ss_pred             CCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCccee
Q psy1672          73 GLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKL  152 (600)
Q Consensus        73 ~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L  152 (600)
                      ++.+|+.|+|++|+|+.|+ ..+..+++|++|+|++|.|+.++  .|..+++|++|++++|.++.+.+..+..+++|+.|
T Consensus        16 n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            6778999999999999985 45678889999999999999885  37888999999999999998887777888999999


Q ss_pred             eCCCCcCcccCh-hhhcCCCCCCEEEcCCCcCCCCCc---ccccccccccEEEc
Q psy1672         153 DMSESRLEHISP-EAFTGAKSLESIKLNGNRLSHFPV---RSVEPLLKLMMIEL  202 (600)
Q Consensus       153 ~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~---~~~~~l~~L~~L~l  202 (600)
                      ++++|+|..+.. ..+..+++|+.|++++|.+...+.   ..+..+++|+.|+.
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            999999888743 567788999999999998887763   34667788887763

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=1.6e-13  Score=129.91  Aligned_cols=145  Identities=23%  Similarity=0.360  Sum_probs=127.4

Q ss_pred             CceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEE
Q psy1672          50 LTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLN  129 (600)
Q Consensus        50 ~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  129 (600)
                      .++.|++++|.++.+..  +.  .+++|+.|+|++|+|+.+.+  +..+++|++|++++|+|+.++.  +..+++|+.|+
T Consensus        47 ~L~~L~l~~~~i~~l~~--l~--~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~  118 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLS  118 (210)
T ss_dssp             TCCEEECTTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEE
T ss_pred             CccEEECcCCCCCCchh--Hh--hCCCCCEEeCCCccccCccc--cccCcccccccccccccccccc--ccccccccccc
Confidence            38999999999998864  33  68999999999999999864  7899999999999999999874  78899999999


Q ss_pred             ccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCc
Q psy1672         130 LARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       130 Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      +++|.+..+.  .+..+++|+.++++.|.+...  ..+..+++|+.+++++|++..++  .+..+++|+.|++++|.+.
T Consensus       119 l~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         119 LEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             CTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--ccccccccccccccccccccc--ccccccccccccccccccccccc--cccCCCCCCEEECCCCCCC
Confidence            9999988763  478899999999999999876  34678999999999999999875  4788999999999999865

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.48  E-value=6.4e-14  Score=140.93  Aligned_cols=173  Identities=20%  Similarity=0.293  Sum_probs=142.0

Q ss_pred             CCCeecccCCceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCC---CChhhhcccCCCCccEEEeec-ccCcccCccc
Q psy1672          19 STCICKWKGGKQWMECRDKFLITIPEAPESELTQVLDMSGNNLQI---LPKEAFRRAGLLNLQKLFLAR-CHIGQIDSGA   94 (600)
Q Consensus        19 ~~C~C~~~~~~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~---l~~~~f~~~~l~~L~~L~L~~-n~l~~i~~~~   94 (600)
                      ..|.|.|.+    |.|....-       ..+ ++.|+|+++.+..   ||..+.   .+++|++|+|++ |++....|..
T Consensus        32 d~C~~~w~g----v~C~~~~~-------~~~-v~~L~L~~~~l~g~~~lp~~l~---~L~~L~~L~Ls~~N~l~g~iP~~   96 (313)
T d1ogqa_          32 DCCNRTWLG----VLCDTDTQ-------TYR-VNNLDLSGLNLPKPYPIPSSLA---NLPYLNFLYIGGINNLVGPIPPA   96 (313)
T ss_dssp             CTTTTCSTT----EEECCSSS-------CCC-EEEEEEECCCCSSCEECCGGGG---GCTTCSEEEEEEETTEESCCCGG
T ss_pred             CCCCCcCCC----eEEeCCCC-------cEE-EEEEECCCCCCCCCCCCChHHh---cCccccccccccccccccccccc
Confidence            567888988    88965321       113 8999999999984   777766   699999999986 7787444566


Q ss_pred             cCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCC-
Q psy1672          95 LDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSL-  173 (600)
Q Consensus        95 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L-  173 (600)
                      |.++++|++|+|++|+|..+.+..+..+..|+.++++.|.+....+..|..++.|+.+++++|.+....+..+..+..+ 
T Consensus        97 i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~  176 (313)
T d1ogqa_          97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF  176 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred             cccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccc
Confidence            9999999999999999999988889999999999999999888878889999999999999999997667777777765 


Q ss_pred             CEEEcCCCcCCCCCcccccccccccEEEccCCcC
Q psy1672         174 ESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       174 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~  207 (600)
                      +.+++++|++....+..+..+.. ..+++..+.+
T Consensus       177 ~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~  209 (313)
T d1ogqa_         177 TSMTISRNRLTGKIPPTFANLNL-AFVDLSRNML  209 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGCCC-SEEECCSSEE
T ss_pred             ccccccccccccccccccccccc-cccccccccc
Confidence            88999999999877767666544 3577776653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=9.2e-14  Score=120.13  Aligned_cols=103  Identities=24%  Similarity=0.344  Sum_probs=59.8

Q ss_pred             eEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEcc
Q psy1672          52 QVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLA  131 (600)
Q Consensus        52 ~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls  131 (600)
                      |+|+|++|+|+.++.  +.  .+.+|++|++++|.|+.+++ .|..+++|+.|++++|.|+.++.  |..+++|+.|+++
T Consensus         1 R~L~Ls~n~l~~l~~--l~--~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LE--QLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG--VANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSSCCC--GG--GGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCCCcc--cc--cCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccCc--cccccccCeEECC
Confidence            456666666666653  22  45666666666666666643 35666666666666666666542  5556666666666


Q ss_pred             CCCCCccCc-ccccCCCCcceeeCCCCcCcc
Q psy1672         132 RNPISKIEK-GAFQFVPGLVKLDMSESRLEH  161 (600)
Q Consensus       132 ~N~i~~l~~-~~~~~l~~L~~L~Ls~n~l~~  161 (600)
                      +|+|+.+.. ..+..+++|+.|++++|.+..
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            666655532 334555555555555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=9e-14  Score=120.17  Aligned_cols=118  Identities=25%  Similarity=0.370  Sum_probs=91.8

Q ss_pred             cEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCC
Q psy1672          78 QKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSES  157 (600)
Q Consensus        78 ~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n  157 (600)
                      |.|+|++|+|+.++.  +..+++|++|++++|.|+.+++ .|..+++|+.|++++|.|+.++  .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccC--ccccccccCeEECCCC
Confidence            578889999888854  7888889999999999988876 5778888999999999888874  3778888888888888


Q ss_pred             cCcccCh-hhhcCCCCCCEEEcCCCcCCCCC---cccccccccccEE
Q psy1672         158 RLEHISP-EAFTGAKSLESIKLNGNRLSHFP---VRSVEPLLKLMMI  200 (600)
Q Consensus       158 ~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~---~~~~~~l~~L~~L  200 (600)
                      +|..++. ..+..+++|+.|++++|.+..++   ...+..+++|+.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8887753 56777888888888888887554   2333445555544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=3e-13  Score=139.13  Aligned_cols=166  Identities=22%  Similarity=0.306  Sum_probs=127.0

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      ...+.+.+..+..++.......++.|++++|.++.++.  +.  .+++|+.|++++|.++.+.+  +..+++|++|++++
T Consensus       199 ~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~  272 (384)
T d2omza2         199 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT--LA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA  272 (384)
T ss_dssp             CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GG--GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             cceeeccCCccCCCCcccccCCCCEEECCCCCCCCcch--hh--cccccchhccccCccCCCCc--ccccccCCEeeccC
Confidence            34567777777776654444458999999999988753  33  68899999999999988764  78889999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      |.++.+++  +..+..++.+.++.|.+..+.  .+..+.+++.|++++|+++.+.  .+..+++|+.|+|++|+|+.++ 
T Consensus       273 ~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~-  345 (384)
T d2omza2         273 NQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS-  345 (384)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCG-
T ss_pred             cccCCCCc--ccccccccccccccccccccc--ccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCCh-
Confidence            99888765  666777888888888777653  3667778888888888887773  3667788888888888887765 


Q ss_pred             ccccccccccEEEccCCcCc
Q psy1672         189 RSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       189 ~~~~~l~~L~~L~l~~N~~~  208 (600)
                       .+..+++|+.|++++|.+.
T Consensus       346 -~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         346 -SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             -GGGGCTTCCEEECCSSCCC
T ss_pred             -hHcCCCCCCEEECCCCcCC
Confidence             4677788888888887765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.42  E-value=3.8e-13  Score=135.12  Aligned_cols=190  Identities=21%  Similarity=0.266  Sum_probs=127.5

Q ss_pred             CCCCC---CCCeecccCC---ceEEEccCCCCC---ccCCCCCC-CCceEEEeeC-CCCC-CCChhhhcccCCCCccEEE
Q psy1672          14 VSSCP---STCICKWKGG---KQWMECRDKFLI---TIPEAPES-ELTQVLDMSG-NNLQ-ILPKEAFRRAGLLNLQKLF   81 (600)
Q Consensus        14 ~~~Cp---~~C~C~~~~~---~~~v~C~~~~L~---~ip~~~~~-~~l~~L~Ls~-n~L~-~l~~~~f~~~~l~~L~~L~   81 (600)
                      .+.|.   ..=.|...++   ...++-.+.++.   .+|..+.. ..|++|+|++ |++. .||..+.   ++.+|++|+
T Consensus        31 ~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~---~L~~L~~L~  107 (313)
T d1ogqa_          31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA---KLTQLHYLY  107 (313)
T ss_dssp             SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG---GCTTCSEEE
T ss_pred             CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccc---cccccchhh
Confidence            35675   4556765442   355677776665   46664432 4599999987 7887 6887765   699999999


Q ss_pred             eecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCc-ceeeCCCCcCc
Q psy1672          82 LARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGL-VKLDMSESRLE  160 (600)
Q Consensus        82 L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L-~~L~Ls~n~l~  160 (600)
                      |++|++..+.+..+..+.+|++++++.|.+....+..|..++.|+.+++++|.+....+..+..+..+ +.++++.|+++
T Consensus       108 Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             hccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc
Confidence            99999999988889999999999999998876666678889999999999998875545555555444 55555655554


Q ss_pred             ccCh-----------------------hhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcC
Q psy1672         161 HISP-----------------------EAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       161 ~i~~-----------------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~  207 (600)
                      ...+                       ..+..+.+|+.|++++|.+..... .+..+++|+.|++++|.+
T Consensus       188 ~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l  256 (313)
T d1ogqa_         188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             EECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCee
Confidence            3322                       222334455555555555544322 234445555555555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=1.9e-12  Score=123.74  Aligned_cols=165  Identities=18%  Similarity=0.300  Sum_probs=102.6

Q ss_pred             eEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCC
Q psy1672          30 QWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN  109 (600)
Q Consensus        30 ~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N  109 (600)
                      +.+.+.+.++++++......+|++|++++|.+..+.+  +.  .+.+|+.|++++|.++.+.  .|.++++|++++++++
T Consensus        44 ~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~--~l~~l~~l~~~~n~~~~i~--~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LK--NLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GT--TCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTS
T ss_pred             CEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--cc--ccccccccccccccccccc--cccccccccccccccc
Confidence            4455566666665433333446666666666665543  22  5666666666666666553  2566666666666666


Q ss_pred             CCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcc
Q psy1672         110 LLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVR  189 (600)
Q Consensus       110 ~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  189 (600)
                      .+..+..  +...+.+..+.++.+.+....  .+..+++|+.|++++|.+..+.  .+.++++|+.|+|++|+++.++  
T Consensus       118 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~--  189 (227)
T d1h6ua2         118 QITDVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS--  189 (227)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--
T ss_pred             cccccch--hccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCCCh--
Confidence            6555433  344555666666655554432  3556677777777777776653  3667778888888888777764  


Q ss_pred             cccccccccEEEccCCcCc
Q psy1672         190 SVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       190 ~~~~l~~L~~L~l~~N~~~  208 (600)
                      .+..+++|+.|++++|++.
T Consensus       190 ~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         190 PLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             GGGGCTTCCEEECTTSCCC
T ss_pred             hhcCCCCCCEEECcCCcCC
Confidence            3667777888887777643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1e-12  Score=126.67  Aligned_cols=174  Identities=19%  Similarity=0.204  Sum_probs=136.8

Q ss_pred             ceEEEccCCCCCccCCCC--CCCCceEEEeeCCCCCC-CChhhhcccCCCCccEEEeec-ccCcccCccccCCCCCccEE
Q psy1672          29 KQWMECRDKFLITIPEAP--ESELTQVLDMSGNNLQI-LPKEAFRRAGLLNLQKLFLAR-CHIGQIDSGALDGLTNLIEI  104 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~--~~~~l~~L~Ls~n~L~~-l~~~~f~~~~l~~L~~L~L~~-n~l~~i~~~~f~~l~~L~~L  104 (600)
                      -+.++..+..++.+|...  ...++++|+|++|.+.. ++...|.  ++.+++.|.+.. |.+..+.+..|.++++|++|
T Consensus        31 l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~--~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEE--SCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccc--ccccccccccccccccccccccccccccccccc
Confidence            456788888999998743  23459999999999864 6777787  789999998864 68888888889999999999


Q ss_pred             EccCCCCCCCCcc-------------------------ccCCC-CCCCEEEccCCCCCccCcccccCCCCcceeeCCCCc
Q psy1672         105 DLSDNLLTSIPSL-------------------------TFQSV-RFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESR  158 (600)
Q Consensus       105 ~Ls~N~l~~l~~~-------------------------~f~~l-~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~  158 (600)
                      ++++|.+..++..                         .|..+ ..++.|++++|+++.+....|.....++.+.+++|+
T Consensus       109 ~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         109 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN  188 (242)
T ss_dssp             EEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTT
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccc
Confidence            9999987755432                         22222 256678888888888877766654334455678899


Q ss_pred             CcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccC
Q psy1672         159 LEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHD  204 (600)
Q Consensus       159 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~  204 (600)
                      |+.++...|.++++|+.|+|++|+|+.++...|..+.+|+.+++.+
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            9999988999999999999999999999988888888877766543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=2.2e-12  Score=132.58  Aligned_cols=143  Identities=27%  Similarity=0.388  Sum_probs=84.6

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      ++.|++++|.++.+++..    .+.+|+.|++++|.++.++  .+..+++|+.|++++|.++.+++  +..+++|++|++
T Consensus       199 ~~~l~l~~n~i~~~~~~~----~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l  270 (384)
T d2omza2         199 LESLIATNNQISDITPLG----ILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL  270 (384)
T ss_dssp             CSEEECCSSCCCCCGGGG----GCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             cceeeccCCccCCCCccc----ccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCCc--ccccccCCEeec
Confidence            566666666666554322    3556666666666666553  25556666666666666665543  555666666666


Q ss_pred             cCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcC
Q psy1672         131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       131 s~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~  207 (600)
                      ++|.++.+.+  +..+..++.+.++.|.+..+  ..+..+.+++.|++++|+++.++  .+..+++|+.|++.+|.+
T Consensus       271 ~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         271 GANQISNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCC
T ss_pred             cCcccCCCCc--cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCC
Confidence            6666655532  45556666666666666654  23455666666666666666654  255566666666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=4.6e-12  Score=121.03  Aligned_cols=162  Identities=21%  Similarity=0.350  Sum_probs=136.2

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -+.++..+..+..++.......++.|++++|.++.++.  +.  ++.+|+.|.++++....+..  +...+.++.+.++.
T Consensus        65 L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~--l~--~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~~~~  138 (227)
T d1h6ua2          65 LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IA--GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDL  138 (227)
T ss_dssp             CCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG--GT--TCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CcEeecCCceeecccccccccccccccccccccccccc--cc--ccccccccccccccccccch--hccccchhhhhchh
Confidence            45788888888887654444559999999999998863  33  79999999999998877644  77889999999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV  188 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  188 (600)
                      +.+.....  +..+++|+.|++++|.+....  .|.++++|+.|+|++|+++.+.  .+.++++|++|+|++|+|+.++ 
T Consensus       139 ~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~-  211 (227)
T d1h6ua2         139 NQITNISP--LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVS-  211 (227)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCG-
T ss_pred             hhhchhhh--hccccccccccccccccccch--hhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCc-
Confidence            99887654  667889999999999987664  3789999999999999999984  4788999999999999999986 


Q ss_pred             ccccccccccEEEccC
Q psy1672         189 RSVEPLLKLMMIELHD  204 (600)
Q Consensus       189 ~~~~~l~~L~~L~l~~  204 (600)
                       .+..+++|+.|++++
T Consensus       212 -~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         212 -PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -GGTTCTTCCEEEEEE
T ss_pred             -ccccCCCCCEEEeeC
Confidence             478899999999863

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.33  E-value=1.5e-12  Score=105.33  Aligned_cols=86  Identities=29%  Similarity=0.402  Sum_probs=72.6

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+....+..|+.+.|.|.+.|.|.|++.|+++|+.+....      ++.+ .+      +.|.|.+++.+|.|.|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~------~~~~-~~------~~L~i~~v~~~D~G~Y   68 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQN------RIEV-SG------GELRFSKLVLEDSGMY   68 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCS------SEEE-ET------TEEEESSCCGGGCEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccc------eeee-ee------eeEEEEeecccCCEEE
Confidence            556666778889999999999999999999999999999886543      2322 22      3799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V  353 (600)
                      +|.|.|..|.....+.|.|
T Consensus        69 ~C~a~N~~G~~~~~~~l~V   87 (89)
T d1cs6a4          69 QCVAENKHGTVYASAELTV   87 (89)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEeCCCEEEEEEEEEE
Confidence            9999999999988888877

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.32  E-value=1.2e-12  Score=107.82  Aligned_cols=92  Identities=22%  Similarity=0.337  Sum_probs=75.2

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.|.|+++++.+.....      ..+..++   ....|.|.+++..|.|.|
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~------~~~~~~~---~~~~L~I~~~~~~D~G~Y   72 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVK------YMKRYNG---NDYGLTINRVKGDDKGEY   72 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTT------BBCCCST---TEEEEEESCCCSGGGSCE
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeE------EEEEecC---CeeEEEeCCCceecCEEE
Confidence            5566667778889999999999999999999999999998865432      2222222   234799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      +|+|.|..|..+..+.|.|..
T Consensus        73 ~C~a~N~~G~~~~~~~l~V~~   93 (97)
T d1koaa1          73 TVRAKNSYGTKEEIVFLNVTR   93 (97)
T ss_dssp             EEEEEETTEEEEEEECCEEEC
T ss_pred             EEEEEECCCEEEEEEEEEEee
Confidence            999999999999988888854

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4e-12  Score=105.35  Aligned_cols=94  Identities=17%  Similarity=0.235  Sum_probs=76.4

Q ss_pred             ccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      .+...+....+..|+.+.|.|.+.|.|.+.+.|+++++.+....      +..+...+   ..+.|.|.+++..|+|.|+
T Consensus         2 ~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~------~~~~~~~~---~~~~L~I~~~~~~D~G~Y~   72 (101)
T d2cqva1           2 QIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE------HMKVENSE---NGSKLTILAARQEHCGCYT   72 (101)
T ss_dssp             EESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSS------SEEEEECS---SEEEEEETTCCTTTCEEEE
T ss_pred             eEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCC------cEEEEEec---ceeEEEEeeCCcccCEEEE
Confidence            44455667788999999999999999999999999998876543      33333332   2357999999999999999


Q ss_pred             EEEecCCCceeEEEEEEEEEccC
Q psy1672         336 CVAENRAGIADANFTLQVTYRGV  358 (600)
Q Consensus       336 C~a~N~~G~~~~~v~L~V~~~~~  358 (600)
                      |.|.|..|.++..+.|.|...+.
T Consensus        73 C~a~N~~G~~~~~~~l~V~~~P~   95 (101)
T d2cqva1          73 LLVENKLGSRQAQVNLTVVDKPD   95 (101)
T ss_dssp             EEEECSSCEEECCEEEEEECSCS
T ss_pred             EEEEECCCEEEEEEEEEEEecCC
Confidence            99999999999999999976543

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.31  E-value=1.9e-12  Score=105.55  Aligned_cols=91  Identities=20%  Similarity=0.282  Sum_probs=73.9

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+......+.+..|+.+.|.|.+.|.|.|.+.|++++..+.....      ..+...+   ..+.|.|.+++..|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~------~~~~~~~---~~~~L~I~~~~~~D~G~   72 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE------LLVDAKS---STTSIFFPSAKRADSGN   72 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTT------SEEEEET---TEEEEECTTBCGGGCEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeee------eeecccc---cceeeccccccccccEE
Confidence            35666667788899999999999999999999999999987765442      1222222   23579999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      |+|.|+|..|.++..+.|.|
T Consensus        73 Y~c~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          73 YKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEE
Confidence            99999999999998888876

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.30  E-value=5.3e-12  Score=103.96  Aligned_cols=92  Identities=23%  Similarity=0.243  Sum_probs=73.4

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+........+..|+.+.|.|.+.|.|.|.+.|++++..+.....    .......++    ...|.|.+++..|.|.|
T Consensus         5 P~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~----~~~~~~~~~----~~~L~I~~~~~~D~G~Y   76 (98)
T d1g1ca_           5 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDR----IYWYWPEDN----VCELVIRDVTGEDSASI   76 (98)
T ss_dssp             EEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSS----EEEEEEETT----EEEEEECSCCGGGCEEE
T ss_pred             CeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeee----eEEEeccce----EEEEEeccCccccCEEE
Confidence            4455556677888999999999999999999999999998865431    111112222    34799999999999999


Q ss_pred             EEEEecCCCceeEEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V~  354 (600)
                      +|.|.|..|..+..+.|.|.
T Consensus        77 ~c~a~N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          77 MVKAINIAGETSSHAFLLVQ   96 (98)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEECCcEEEEEEEEEEE
Confidence            99999999999998888885

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.30  E-value=4.4e-12  Score=105.26  Aligned_cols=93  Identities=22%  Similarity=0.354  Sum_probs=75.5

Q ss_pred             ccccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         254 KPEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       254 ~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      .|.+...+..+.+..|+.+.|.|.+.|.|.|++.|+++|..+....      +..+...+.  ..+.|.|.+++..|.|.
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~------~~~~~~~~~--~~~~L~I~~~~~~D~G~   79 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESR------HFQIDYDEE--GNCSLTISEVCGDDDAK   79 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSS------SEEEEECTT--CEEEEEESSCCGGGCEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeecccccee------eEeEEEecC--ceeeeEecCCCHHhCEE
Confidence            4666666777888999999999999999999999999999887543      233322221  13579999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |+|+|.|..|..+.++.|.|.
T Consensus        80 Y~C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          80 YTCKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEECCcEEEEEEEEEEE
Confidence            999999999999998888873

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.29  E-value=3e-12  Score=103.96  Aligned_cols=87  Identities=29%  Similarity=0.497  Sum_probs=71.0

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEE
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCV  337 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~  337 (600)
                      ...+..+.+..|+.+.|.|.+.|.|.|.+.|+++|..+....      +..+...+   ..+.|.|.+++..|+|.|+|.
T Consensus         3 i~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~------~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~   73 (91)
T d1tnna_           3 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSA------RHQVTTTK---YKSTFEISSVQASDEGNYSVV   73 (91)
T ss_dssp             SBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSS------SCEEEECS---SEEEEECSSCCSCCCEEEEEE
T ss_pred             EeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeeccccccc------ceeeeeec---ceeEEeecCCCHHHCEEEEEE
Confidence            344677889999999999999999999999999998876543      22222222   235899999999999999999


Q ss_pred             EecCCCceeEEEEEEE
Q psy1672         338 AENRAGIADANFTLQV  353 (600)
Q Consensus       338 a~N~~G~~~~~v~L~V  353 (600)
                      |.|..|..+..+.|.|
T Consensus        74 a~N~~G~~~~~~~l~V   89 (91)
T d1tnna_          74 VENSEGKQEAEFTLTI   89 (91)
T ss_dssp             CBCSSCBCCEEEEEEC
T ss_pred             EEECCCEEEEEEEEEE
Confidence            9999999998888876

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.26  E-value=6.6e-12  Score=101.45  Aligned_cols=78  Identities=26%  Similarity=0.469  Sum_probs=65.6

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..+.+.+|+.+.|.|.+.|.|.|.|.|+++++.+...       +..+. +      ..|.|.+++..|.|.|+|+|.|.
T Consensus        11 ~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-------~~~~~-~------~~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4          11 KVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-------RATVT-D------SGLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             SEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-------SEEEE-T------TEEEESSCCSTTCEEEEEEEEET
T ss_pred             CCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-------cEEEe-e------eeEEECCCChhhCEEEEEEEEEC
Confidence            4467789999999999999999999999999888532       22222 2      26999999999999999999999


Q ss_pred             CCceeEEEEEEE
Q psy1672         342 AGIADANFTLQV  353 (600)
Q Consensus       342 ~G~~~~~v~L~V  353 (600)
                      .|..+..+.|.|
T Consensus        77 ~G~~~~~~~l~V   88 (89)
T d1biha4          77 HGDKYFETLVQV   88 (89)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999988888876

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=7.1e-12  Score=103.57  Aligned_cols=86  Identities=28%  Similarity=0.519  Sum_probs=67.9

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ..++..|+.+.|.|.+.|.|.|.|.|+++|..+.......  .+. ....+    .+.|.|.+++..|.|.|+|.|+|..
T Consensus        14 ~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~--~~~-~~~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~   86 (100)
T d1qz1a3          14 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDD--EKH-IFSDD----SSELTIRNVDKNDEAEYVCIAENKA   86 (100)
T ss_dssp             EEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CC--SSE-EECTT----SCEEEECSCCGGGCEEEEEEEEETT
T ss_pred             eEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccc--eeE-EeecC----ceEEEeCCCCcccCEEEEEEEEECC
Confidence            4567889999999999999999999999999876543211  111 11221    2579999999999999999999999


Q ss_pred             CceeEEEEEEEEE
Q psy1672         343 GIADANFTLQVTY  355 (600)
Q Consensus       343 G~~~~~v~L~V~~  355 (600)
                      |..+..+.|.|..
T Consensus        87 G~~~~~~~l~V~~   99 (100)
T d1qz1a3          87 GEQDASIHLKVFA   99 (100)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEEE
Confidence            9999999888843

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=5.7e-14  Score=131.87  Aligned_cols=143  Identities=22%  Similarity=0.299  Sum_probs=108.1

Q ss_pred             ceEEEeeCC--CCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEE
Q psy1672          51 TQVLDMSGN--NLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDL  128 (600)
Q Consensus        51 l~~L~Ls~n--~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L  128 (600)
                      .+.+++.++  .++.++....   .+.+|++|+|++|+|+.++  .|.++++|++|+|++|.|+.++. .+..+++|+.|
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~---~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L   98 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLS---TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEEL   98 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHH---HTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEE
T ss_pred             cceeeeecccCchhhhhhHHh---cccccceeECcccCCCCcc--cccCCccccChhhcccccccccc-ccccccccccc
Confidence            455666654  3555554443   6899999999999999885  38889999999999999998875 34445679999


Q ss_pred             EccCCCCCccCcccccCCCCcceeeCCCCcCcccCh-hhhcCCCCCCEEEcCCCcCCCCCcc----------cccccccc
Q psy1672         129 NLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISP-EAFTGAKSLESIKLNGNRLSHFPVR----------SVEPLLKL  197 (600)
Q Consensus       129 ~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~~----------~~~~l~~L  197 (600)
                      ++++|.++.+.  .+..+++|+.|++++|+|+.+.. ..+..+++|+.|+|++|.+......          .+..+++|
T Consensus        99 ~l~~N~i~~l~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L  176 (198)
T d1m9la_          99 WISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL  176 (198)
T ss_dssp             ECSEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSC
T ss_pred             ccccccccccc--cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCc
Confidence            99999998773  36778889999999999988743 5678889999999999987654322          14556777


Q ss_pred             cEEE
Q psy1672         198 MMIE  201 (600)
Q Consensus       198 ~~L~  201 (600)
                      +.||
T Consensus       177 ~~LD  180 (198)
T d1m9la_         177 KKLD  180 (198)
T ss_dssp             CEES
T ss_pred             CEeC
Confidence            7765

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.22  E-value=2.2e-11  Score=102.00  Aligned_cols=100  Identities=20%  Similarity=0.266  Sum_probs=68.3

Q ss_pred             ccccccc-cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeC----CceeeeeeEEEecCCC
Q psy1672         254 KPEIRMD-SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ----GEYERKSSLVLTNAQE  328 (600)
Q Consensus       254 ~p~i~~~-~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~----g~~~~~s~L~I~~v~~  328 (600)
                      +|.+... +..+++..|+.+.|.|.+.|.|.|+|.|++++....................    ......+.|.|.+++.
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            3455443 6778899999999999999999999999997643321110000001111100    0112356899999999


Q ss_pred             CCCeEEEEEEecCCCceeEEEEEEE
Q psy1672         329 SDSGRFYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      .|.|.|+|.|+|..|.+.+++.|.|
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999999999999988877

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.2e-11  Score=100.55  Aligned_cols=96  Identities=27%  Similarity=0.439  Sum_probs=71.0

Q ss_pred             cccccccccccccccccceeeeEeecCCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCC-CCCCe
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ-ESDSG  332 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~-~~d~G  332 (600)
                      |.+...+....+.+|+.+.|.|.+.|.|++ .+.|++++.............++.+...+   ..+.|.|.+++ ..|.|
T Consensus         3 P~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~~D~G   79 (101)
T d3b5ha1           3 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ---GRSELHIENLNMEADPG   79 (101)
T ss_dssp             CCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEET---TEEEEEECSCCTTTSSE
T ss_pred             ceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCC---CEEEEEEeccccccCCE
Confidence            555555677778899999999999999987 79999965433222111223344444333   23589999998 57999


Q ss_pred             EEEEEEecCCCceeEEEEEEE
Q psy1672         333 RFYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      .|+|.|.|..|.++..+.|.|
T Consensus        80 ~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          80 QYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEECCCEEEEEEEEEE
Confidence            999999999999999888877

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.2e-11  Score=100.60  Aligned_cols=94  Identities=20%  Similarity=0.297  Sum_probs=70.5

Q ss_pred             ccccccccccccccceeeeEeecCC---CCeeEEEEcCeeccCCcccCccceEEE---eeCCceeeeeeEEEecCCCCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIP---PAAISWYWNGRLLLNNTAFSSYQRIFV---IEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P---~p~i~W~~~g~~l~~~~~~~~~~~~~~---~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      ...+..+++..|++++|.|.+.|.|   .|.|.|++++........   ..++..   .........+.|.|.+++..|.
T Consensus         8 v~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           8 VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKV---GQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             EECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTC---SSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             EECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccC---CceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            3446678889999999999999998   578999997654322211   112221   1122223457899999999999


Q ss_pred             eEEEEEEecCCCceeEEEEEEEE
Q psy1672         332 GRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       332 G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |.|+|.|+|..|.+++.+.|.|.
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L~V~  107 (110)
T d2avga1          85 GGYRCEVSTKDKFDCSNFNLTVH  107 (110)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cEEEEEEEECCCeEEEEEEEEEE
Confidence            99999999999999999999985

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.7e-11  Score=102.34  Aligned_cols=98  Identities=14%  Similarity=0.219  Sum_probs=71.5

Q ss_pred             ccccccccccccccceeeeEeecCC---CCeeEEEEcCeeccCCcccCccceEEE---eeCCceeeeeeEEEecCCCCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIP---PAAISWYWNGRLLLNNTAFSSYQRIFV---IEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P---~p~i~W~~~g~~l~~~~~~~~~~~~~~---~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      ...+..+.+..|+.++|.|.+.|.|   .|+|.|++++........   ..+..+   .........+.|.|.+++..|.
T Consensus         4 ~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   80 (113)
T d2dava1           4 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKA---GKHLQLKETFERHSRVYTFEMQIIKAKDNFA   80 (113)
T ss_dssp             CSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHT---TSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             eECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeecccccccc---ceeeeeccceeeEeecCEEEEEEccCCHHHC
Confidence            3446778899999999999999998   579999997643221110   111111   1222223456799999999999


Q ss_pred             eEEEEEEecCCCceeEEEEEEEEEccC
Q psy1672         332 GRFYCVAENRAGIADANFTLQVTYRGV  358 (600)
Q Consensus       332 G~Y~C~a~N~~G~~~~~v~L~V~~~~~  358 (600)
                      |.|+|.|.|..|..++.+.|.|...+.
T Consensus        81 G~Y~C~a~N~~G~~~~~~~L~V~~~~~  107 (113)
T d2dava1          81 GNYRCEVTYKDKFDSCSFDLEVHESTG  107 (113)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEECCCC
T ss_pred             eEEEEEEEeCCCEEEEEEEEEEEcCCC
Confidence            999999999999999999999965543

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=2.2e-11  Score=98.95  Aligned_cols=88  Identities=24%  Similarity=0.323  Sum_probs=69.8

Q ss_pred             ccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      .+...+...++.+|+.+.|.|.+.|.|.|.+.|+++++.+....    ..+.....+      +.|.|.+++..|+|.|+
T Consensus         3 ~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~----~~~~~~~~~------~~L~I~~~~~~D~G~Y~   72 (92)
T d1epfa2           3 MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK----DVRFIVLSN------NYLQIRGIKKTDEGTYR   72 (92)
T ss_dssp             EEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGC----CTTEEECTT------SCEEETTCCGGGCEEEE
T ss_pred             EEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCccccccc----ceeeeeeee------eeEEECCCCHHhCEEEE
Confidence            34455677889999999999999999999999999998776543    122333333      36999999999999999


Q ss_pred             EEEecCCCceeEEEEEEE
Q psy1672         336 CVAENRAGIADANFTLQV  353 (600)
Q Consensus       336 C~a~N~~G~~~~~v~L~V  353 (600)
                      |.|.|..|.......+.|
T Consensus        73 C~a~n~~~~~~~~~~i~V   90 (92)
T d1epfa2          73 CEGRILARGEINFKDIQV   90 (92)
T ss_dssp             EEEEEGGGTEEEEEEEEE
T ss_pred             EEEEECcCCEEEEEEEEE
Confidence            999999887776666665

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.20  E-value=1.3e-11  Score=100.10  Aligned_cols=85  Identities=20%  Similarity=0.236  Sum_probs=66.8

Q ss_pred             ccccc-ccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         255 PEIRM-DSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       255 p~i~~-~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |.+.. .+..+.+.+|+.++|.|.+.|.|.|.|.|++++.......         .      ...+.|.|.+++..|.|.
T Consensus         5 P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~---------~------~~~~~L~I~~v~~~D~G~   69 (91)
T d1cs6a3           5 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW---------L------SSEPLLHIQNVDFEDEGT   69 (91)
T ss_dssp             EEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC---------S------BSSSEEEECSCCGGGCEE
T ss_pred             CeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe---------e------eeeeEEEeCCCCccCCEE
Confidence            44443 3567888999999999999999999999999654322111         0      112479999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |+|+|.|..|..+..+.|.|.
T Consensus        70 Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          70 YECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEEE
Confidence            999999999999888888773

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.18  E-value=2.1e-11  Score=100.08  Aligned_cols=82  Identities=22%  Similarity=0.413  Sum_probs=66.1

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      ..+..|+.+.|.|.+.|.|.|.|.|+++|+.+.......   ......     ..+.|.|.+++.+|.|.|+|.|+|..|
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~---~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G   86 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG---GYKVRN-----QHWSLIMESVVPSDKGNYTCVVENEYG   86 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTT---CCEEEG-----GGTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCcee---eEEEcC-----CcEEEEECCCCcccCEEEEEEEEECCC
Confidence            456789999999999999999999999999886543221   111111     124799999999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy1672         344 IADANFTLQV  353 (600)
Q Consensus       344 ~~~~~v~L~V  353 (600)
                      ..+.++.|.|
T Consensus        87 ~~~~~~~l~V   96 (97)
T d3dara1          87 SINHTYHLDV   96 (97)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            9999888877

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.8e-11  Score=97.15  Aligned_cols=86  Identities=19%  Similarity=0.383  Sum_probs=67.7

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      |..+.+..|+.+.|.|.+.|.|.|.+.|++++..+....      +..+.... ....+.|.|.+++..|.|.|+|.|+|
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~------~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N   75 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLD------QLYIPVSE-QHWIGFLSLKSVERSDAGRYWCQVED   75 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSE------EEEEEEET-TEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccce------eeeeeecc-cCceeeEEECCCCcccCEEEEEEEEE
Confidence            567788899999999999999999999999998876533      22222211 12345799999999999999999999


Q ss_pred             CCCce-eEEEEEEE
Q psy1672         341 RAGIA-DANFTLQV  353 (600)
Q Consensus       341 ~~G~~-~~~v~L~V  353 (600)
                      ..|.. +..+.|.|
T Consensus        76 ~~G~~~S~~~~l~V   89 (91)
T d1rhfa1          76 GGETEISQPVWLTV   89 (91)
T ss_dssp             CTTCEECCCEEEEE
T ss_pred             CCCCEEEEEEEEEE
Confidence            99975 55677766

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.9e-11  Score=99.07  Aligned_cols=98  Identities=19%  Similarity=0.282  Sum_probs=72.4

Q ss_pred             ccccccc-ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeC---CceeeeeeEEEecCCCCC
Q psy1672         255 PEIRMDS-RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ---GEYERKSSLVLTNAQESD  330 (600)
Q Consensus       255 p~i~~~~-~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~---g~~~~~s~L~I~~v~~~d  330 (600)
                      |.+.... ..+.+..|+.+.|.|.+.|.|.|.|.|.++|+.+.................   +.....+.|.|.+++..|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            4444433 446788999999999999999999999999998765543222111111111   122346789999999999


Q ss_pred             Ce-EEEEEEecCCCceeEEEEEE
Q psy1672         331 SG-RFYCVAENRAGIADANFTLQ  352 (600)
Q Consensus       331 ~G-~Y~C~a~N~~G~~~~~v~L~  352 (600)
                      .| .|+|.|.|..|.+++.+.|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            99 59999999999999888775

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=5.8e-11  Score=98.53  Aligned_cols=86  Identities=20%  Similarity=0.333  Sum_probs=67.6

Q ss_pred             ccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeE
Q psy1672         268 SSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADA  347 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~  347 (600)
                      .+....+.|.+.|.|.|+|.|+++|+.+....    ...+...........+.|.|.+++..|.|.|+|.|+|..|.+++
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~   90 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESK----YICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEK   90 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCS----SEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeee----eeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEE
Confidence            45666789999999999999999999987543    22333333333344578999999999999999999999999999


Q ss_pred             EEEEEEEEcc
Q psy1672         348 NFTLQVTYRG  357 (600)
Q Consensus       348 ~v~L~V~~~~  357 (600)
                      .+.|.|..++
T Consensus        91 ~~~v~V~~~P  100 (103)
T d1wwbx_          91 QISAHFMGWP  100 (103)
T ss_dssp             EEEECCSCCC
T ss_pred             EEEEEEEeCC
Confidence            9998885443

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=6.6e-11  Score=95.21  Aligned_cols=79  Identities=22%  Similarity=0.338  Sum_probs=64.7

Q ss_pred             cccccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         261 SRYVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      +....+.+|+.+.|.|.+. +.|.+.+.|++++..+....       . ...      .+.|.|.+++..|+|.|+|.|+
T Consensus         9 p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~-------~-~~~------~~~L~i~~v~~~d~G~Y~C~a~   74 (89)
T d1gl4b_           9 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-------A-MDF------NGILTIRNVQPSDAGTYVCTGS   74 (89)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT-------E-EEE------TTEEEECSCCGGGCEEEEEEEE
T ss_pred             CCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccc-------c-Eee------ceEEEEecCCcccCEEEEEEEE
Confidence            4567788999999999998 67889999999876654322       1 112      2379999999999999999999


Q ss_pred             cCCCceeEEEEEEE
Q psy1672         340 NRAGIADANFTLQV  353 (600)
Q Consensus       340 N~~G~~~~~v~L~V  353 (600)
                      |..|.++..+.|.|
T Consensus        75 N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          75 NMFAMDQGTATLHV   88 (89)
T ss_dssp             CSSCEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEEE
Confidence            99999998888876

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=6.4e-11  Score=99.03  Aligned_cols=93  Identities=22%  Similarity=0.317  Sum_probs=69.4

Q ss_pred             ccccccccccceeee---EeecCCCCeeEEEEcCeeccCCcccCccceEEEeeC--CceeeeeeEEEecCCCCCCeEEEE
Q psy1672         262 RYVEAVSSENATVVC---RVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQ--GEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C---~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~--g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      ..+.+..|....+.|   .+.|.|.|.+.|+++|+.+.....    ........  ......+.|.|.+++..|.|.|+|
T Consensus         5 ~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   80 (107)
T d1he7a_           5 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSF----IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL   80 (107)
T ss_dssp             CCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSS----EEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEE
T ss_pred             CEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccc----eeeeeeeeeeeeeccceEEEECcccHHHCcEEEE
Confidence            345555666666555   889999999999999998875431    12222222  222345789999999999999999


Q ss_pred             EEecCCCceeEEEEEEEEEccC
Q psy1672         337 VAENRAGIADANFTLQVTYRGV  358 (600)
Q Consensus       337 ~a~N~~G~~~~~v~L~V~~~~~  358 (600)
                      +|+|..|.+++++.+.|..+|.
T Consensus        81 ~A~N~~G~~~~~i~v~v~~~P~  102 (107)
T d1he7a_          81 LAANPFGQASASIMAAFMDNPF  102 (107)
T ss_dssp             EEEETTEEEEEEEEECCCSCTT
T ss_pred             EEEeCCCEEEEEEEEEEEcCCC
Confidence            9999999999999998866553

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5.6e-11  Score=94.91  Aligned_cols=81  Identities=20%  Similarity=0.327  Sum_probs=63.3

Q ss_pred             cccccccccccccccccceeeeEeecCCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |.+...+....+..|+.+.|.|.+.|.|.| +|.|+++|..+....                  .+.+.|......|.|.
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~------------------~~~~~l~~~~~~d~G~   63 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA------------------PSPSVLNVTGVTQSTM   63 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE------------------ESSEEEEECCCSSCEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC------------------CcceEEecCCccccEE
Confidence            455666777888999999999999999988 899999998775432                  1134566666789999


Q ss_pred             EEEEEecCCCce-eEEEEEEE
Q psy1672         334 FYCVAENRAGIA-DANFTLQV  353 (600)
Q Consensus       334 Y~C~a~N~~G~~-~~~v~L~V  353 (600)
                      |+|.|.|..|.. ++.+.|+|
T Consensus        64 Y~C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          64 FSCEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             EEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEcCCCcEEEEEEEEEE
Confidence            999999999964 44566655

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.13  E-value=7.2e-11  Score=96.78  Aligned_cols=86  Identities=21%  Similarity=0.325  Sum_probs=66.8

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +..+.+..|+.+.|.|.+.|.|.+.+.|+++++.+......    ++.....   ...+.|.|.+++.+|.|.|+|.|.|
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~----~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N   82 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPED----RITRHNR---TSGKRLLFKTTLPEDEGVYTCEVDN   82 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTS----SEESCSS---STTSEEEESSCCGGGCEEEEEEECC
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeecccccee----eeeeeee---cCCCEEEEEeccccccEEEEEEEEE
Confidence            45677889999999999999999999999999987644311    1111111   1234799999999999999999999


Q ss_pred             CCCcee-EEEEEEE
Q psy1672         341 RAGIAD-ANFTLQV  353 (600)
Q Consensus       341 ~~G~~~-~~v~L~V  353 (600)
                      ..|... ..+.|.|
T Consensus        83 ~~G~~~s~s~~L~V   96 (97)
T d1biha3          83 GVGKPQKHSLKLTV   96 (97)
T ss_dssp             SSSSCEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEE
Confidence            999864 4677776

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.1e-11  Score=96.19  Aligned_cols=73  Identities=10%  Similarity=0.113  Sum_probs=61.4

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...+.+|+.++|.|.+.|.|.|.|.|++++.....             .      ...|.|.+++..|+|.|+|+|.|..
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~-------------~------~~~l~i~~v~~~DsG~Y~C~a~N~~   68 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ-------------G------GKTLSVSQLELQDSGTWTCTVLQNQ   68 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE-------------E------SSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeeccccee-------------e------eeeeeeeecccccccEEEEEEEeCC
Confidence            45678999999999999999999999986543221             1      1268999999999999999999999


Q ss_pred             CceeEEEEEEEE
Q psy1672         343 GIADANFTLQVT  354 (600)
Q Consensus       343 G~~~~~v~L~V~  354 (600)
                      |..+..+.|.|.
T Consensus        69 g~~~~~~~v~V~   80 (84)
T d2nxyb2          69 KKVEFKIDIVVL   80 (84)
T ss_dssp             EEEEEEEEECEE
T ss_pred             CEEEEEEEEEEE
Confidence            999988888774

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.5e-11  Score=99.85  Aligned_cols=88  Identities=16%  Similarity=0.213  Sum_probs=69.4

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe-E
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG-R  333 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G-~  333 (600)
                      |.+........+.+|+.+.|.|.+.|.|.|.+.|++++..+......        .   .....+.|.|.+++.+|.| .
T Consensus         3 P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~--------~---~~~~~~~L~i~~~~~~d~G~~   71 (92)
T d2ifga1           3 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK--------S---GGLPSLGLTLANVTSDLNRKN   71 (92)
T ss_dssp             CEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC--------C---CCSSEEEEEEESCCSTTTTCC
T ss_pred             CEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeee--------e---eeccceeEEEccccccccceE
Confidence            55666677788999999999999999999999999988655322100        0   1112357999999999999 6


Q ss_pred             EEEEEecCCCceeEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      |+|.|.|..|.++.++.|.|
T Consensus        72 Y~C~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          72 VTCWAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             EEECCEETTEECCEEECCCC
T ss_pred             EEEEEEcCCCEEEEEEEEEE
Confidence            99999999999988877755

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-10  Score=96.63  Aligned_cols=83  Identities=17%  Similarity=0.316  Sum_probs=64.2

Q ss_pred             cceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEE
Q psy1672         271 NATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFT  350 (600)
Q Consensus       271 ~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~  350 (600)
                      ...+.|.+.|.|.|.+.|+++|+.+.....    .......++ ....+.|.|.+++..|.|.|+|+|+|..|.+++++.
T Consensus        19 ~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~----~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   93 (105)
T d1wwca_          19 EHCIEFVVRGNPPPTLHWLHNGQPLRESKI----IHVEYYQEG-EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTIN   93 (105)
T ss_dssp             EEEEEEEEECSSCCEEEEEETTEECCCSSS----EEEEEEECS-SEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEEeCCCeEEEEeCccccCCCcc----eeeeEEeec-ccceEEEEEeecccccceEEEEEEEcCCCEEEEEEE
Confidence            445778999999999999999998865431    122222222 234578999999999999999999999999999998


Q ss_pred             EEEEEccC
Q psy1672         351 LQVTYRGV  358 (600)
Q Consensus       351 L~V~~~~~  358 (600)
                      |.|..++.
T Consensus        94 v~V~~~P~  101 (105)
T d1wwca_          94 GHFLKEPF  101 (105)
T ss_dssp             ECCSCCCC
T ss_pred             EEEEeCCC
Confidence            88865543

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.2e-11  Score=95.31  Aligned_cols=80  Identities=14%  Similarity=0.229  Sum_probs=64.3

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..+.+..|+.+.|.|.+.|.|.|.+.|.+++..+....       ... ..    ..+.|.|.+++.+|.|.|+|+|.|.
T Consensus         9 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-------~~~-~~----~~~~L~I~~v~~~d~G~Y~C~a~N~   76 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK-------VTN-EG----TTSTLTMNPVSFGNEHSYLCTATCE   76 (90)
T ss_dssp             SEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE-------EEE-ET----TEEEEEESSCCGGGCSEEEEEEEET
T ss_pred             CcEEEECCCEEEEEEeccCCCCceEEEEecCccceeee-------eee-ec----CCcEEEEecccccccceEEEEEEeC
Confidence            34556789999999999999999999999765443221       111 11    2358999999999999999999999


Q ss_pred             CCceeEEEEEEE
Q psy1672         342 AGIADANFTLQV  353 (600)
Q Consensus       342 ~G~~~~~v~L~V  353 (600)
                      .|..++++.|.|
T Consensus        77 ~g~~~~~~~v~V   88 (90)
T d1vcaa2          77 SRKLEKGIQVEI   88 (90)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999999988887

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.9e-11  Score=96.33  Aligned_cols=72  Identities=15%  Similarity=0.174  Sum_probs=60.9

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +..+++.+|+.+.|.|.+.|.|.|++.|++++..+...                      +.+.+++..|+|.|+|+|.|
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~----------------------~~~~~v~~~d~G~Y~C~A~N   68 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI----------------------GESVTVTRDLEGTYLCRARS   68 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT----------------------TSCEECCGGGCEEEEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee----------------------eeeeccccCCCCEEEEEEEc
Confidence            46678889999999999999999999999988655421                      12456788999999999999


Q ss_pred             CCCceeEEEEEEEE
Q psy1672         341 RAGIADANFTLQVT  354 (600)
Q Consensus       341 ~~G~~~~~v~L~V~  354 (600)
                      .+|..+..+.|.|.
T Consensus        69 ~~G~~~~~~~l~V~   82 (84)
T d2oz4a3          69 TQGEVTREVTVNVL   82 (84)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEE
Confidence            99999998888884

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.09  E-value=6.7e-11  Score=96.29  Aligned_cols=82  Identities=23%  Similarity=0.371  Sum_probs=64.0

Q ss_pred             cccccccccccccccccceeeeEeecCCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |.+...+..+.+.+|+.+.|.|.+.|.|.| .+.|+++|+.+....    . ......+     .+.|.|.+++.+|.|.
T Consensus         3 P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~----~-~~~~~~~-----~~~L~i~~v~~~D~G~   72 (94)
T d1biha1           3 PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQE----H-NAALRKD-----EGSLVFLRPQASDEGH   72 (94)
T ss_dssp             CEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTT----T-TEEECTT-----SCCEEESSCCGGGCEE
T ss_pred             CEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeec----c-eeeeccc-----ceEEEEeccChhcCeE
Confidence            445556677889999999999999999876 799999998875433    1 1112111     2479999999999999


Q ss_pred             EEEEEecCCCcee
Q psy1672         334 FYCVAENRAGIAD  346 (600)
Q Consensus       334 Y~C~a~N~~G~~~  346 (600)
                      |+|.|.|..|.+.
T Consensus        73 Y~C~a~N~~G~~~   85 (94)
T d1biha1          73 YQCFAETPAGVAS   85 (94)
T ss_dssp             EEEEEEETTEEEE
T ss_pred             EEEEEEeCCCEEE
Confidence            9999999999754

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=8.7e-11  Score=97.56  Aligned_cols=92  Identities=14%  Similarity=0.137  Sum_probs=66.3

Q ss_pred             ccccccccccccceeeeEeecCC-CCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      .+....+..|+.+.|.|.+.|.| .|.|.|++++..+.....   ........++ ......|.|.+++.+|.|.|+|.|
T Consensus         9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~---~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~A   84 (104)
T d2aw2a1           9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLE---DRQTSWKEEK-NISFFILHFEPVLPNDNGSYRCSA   84 (104)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECC---SSCEEEEECS-SCEEEEEEESSCCGGGCEEEEEEE
T ss_pred             cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccc---eeeeeEEecC-CceEEEEEEccccHHHCCeEEEEE
Confidence            34566788999999999999998 589999997765432211   1122222222 123457999999999999999999


Q ss_pred             ecCCCcee-EEEEEEEEE
Q psy1672         339 ENRAGIAD-ANFTLQVTY  355 (600)
Q Consensus       339 ~N~~G~~~-~~v~L~V~~  355 (600)
                      .|..|... ..+.|.|.+
T Consensus        85 ~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          85 NFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EETTEEEECCCEEEEEEC
T ss_pred             EcCCCeEEEEEEEEEEEE
Confidence            99999754 567777753

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.6e-10  Score=99.51  Aligned_cols=90  Identities=17%  Similarity=0.228  Sum_probs=67.9

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCc-----------------------cceEEEeeCCceee
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSS-----------------------YQRIFVIEQGEYER  317 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~-----------------------~~~~~~~~~g~~~~  317 (600)
                      +..+.+..|+.++|.|.+.|.|.|.|.|++++..+........                       ..+..+...   ..
T Consensus        16 ~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~   92 (130)
T d1gxea_          16 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETT---KD   92 (130)
T ss_dssp             CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEE---TT
T ss_pred             CCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEEC---CC
Confidence            4567888999999999999999999999998766543321100                       001111111   12


Q ss_pred             eeeEEEecCCCCCCeEEEEEEecCCCceeEEEEEEE
Q psy1672         318 KSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       318 ~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      .+.|.|.+++.+|+|.|+|.|.|.+|.+++.+.|.|
T Consensus        93 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  128 (130)
T d1gxea_          93 RSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV  128 (130)
T ss_dssp             EEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEE
Confidence            457999999999999999999999999999988887

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1e-10  Score=94.50  Aligned_cols=79  Identities=20%  Similarity=0.252  Sum_probs=63.1

Q ss_pred             cccccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         261 SRYVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      ...+.+..|+++.|.|.+. |.|.+.+.|.+.+..+..         ... ..    ..+.|+|.+++.+|.|.|+|+|.
T Consensus        10 ~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~---------~~~-~~----~~~~L~i~~v~~~D~G~Y~C~As   75 (90)
T d1gsma1          10 EPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA---------VQS-DT----GRSVLTVRNASLSAAGTRVCVGS   75 (90)
T ss_dssp             CSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC---------EEE-ES----SEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee---------eec-cC----ceeeEEcCccChhhCCcEEEEEE
Confidence            3456778999999999986 889999999986654421         111 11    23589999999999999999999


Q ss_pred             cCCCceeEEEEEEE
Q psy1672         340 NRAGIADANFTLQV  353 (600)
Q Consensus       340 N~~G~~~~~v~L~V  353 (600)
                      |..|..+.++.|.|
T Consensus        76 n~~g~~~~s~~l~V   89 (90)
T d1gsma1          76 CGGRTFQHTVQLLV   89 (90)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             eCCCcEEEEEEEEE
Confidence            99999999888876

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=4.8e-10  Score=91.69  Aligned_cols=89  Identities=28%  Similarity=0.452  Sum_probs=65.2

Q ss_pred             ccccccccccccccceeeeEeecCCC-CeeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPP-AAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~-p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      ...+...++..|+.+.|.|.+.|.|+ +.|.|++ ++..+....     .+..+...+  ...+.|.|.+++..|.|.|+
T Consensus         4 ~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~-----~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~   76 (97)
T d1epfa1           4 DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ-----QRISVVWND--DDSSTLTIYNANIDDAGIYK   76 (97)
T ss_dssp             EEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBS-----SSEEEEEEE--TTEEEEEECSCCGGGCEEEE
T ss_pred             EEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeecc-----ccEEEEeec--CcceEEEcccCchhhceEEE
Confidence            34456678889999999999999985 7999999 555544322     223322211  12357999999999999999


Q ss_pred             EEEecCCCce-eEEEEEEE
Q psy1672         336 CVAENRAGIA-DANFTLQV  353 (600)
Q Consensus       336 C~a~N~~G~~-~~~v~L~V  353 (600)
                      |.|.|..|.. ++.+.|.|
T Consensus        77 C~a~N~~G~~~~~tv~l~V   95 (97)
T d1epfa1          77 CVVTAEDGTQSEATVNVKI   95 (97)
T ss_dssp             EEEEETTTEEEEEEEEEEE
T ss_pred             EEEEeCCCcEEEEEEEEEE
Confidence            9999999975 45677766

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.03  E-value=7.7e-11  Score=96.56  Aligned_cols=88  Identities=25%  Similarity=0.432  Sum_probs=63.7

Q ss_pred             cccccccccccccc---cccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         255 PEIRMDSRYVEAVS---SENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       255 p~i~~~~~~~~v~~---G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      |.+...+....+..   ++.++|.|.+.|.|.|.+.|+++|..+.....    .+.. ..++     ..|.|..++..|.
T Consensus         5 P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~----~~~~-~~~~-----~~l~i~~~~~~d~   74 (97)
T d1cs6a1           5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPD----SRYR-LVAG-----DLVISNPVKAKDA   74 (97)
T ss_dssp             EEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTT----SSEE-EETT-----EEEEESCCHHHHC
T ss_pred             CEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCC----ceEE-eeee-----eEEEEecccccCC
Confidence            44555555555444   47899999999999999999999988865431    1222 2222     3577888889999


Q ss_pred             eEEEEEEecCCCce-eEEEEEE
Q psy1672         332 GRFYCVAENRAGIA-DANFTLQ  352 (600)
Q Consensus       332 G~Y~C~a~N~~G~~-~~~v~L~  352 (600)
                      |.|+|+|.|..|.. ++.+.|.
T Consensus        75 G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          75 GSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEEEEEEETTEEEECCCEEEE
T ss_pred             EEEEEEEEECCCEEEEEEEEEe
Confidence            99999999999976 3456554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.01  E-value=2.9e-12  Score=120.00  Aligned_cols=130  Identities=24%  Similarity=0.278  Sum_probs=106.5

Q ss_pred             CCCccEEEeecc--cCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcce
Q psy1672          74 LLNLQKLFLARC--HIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVK  151 (600)
Q Consensus        74 l~~L~~L~L~~n--~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~  151 (600)
                      ...++.+.+...  .+..+ +..|..+++|++|+|++|.|+.++.  |..+++|+.|+|++|.|+.++ ..+..+++|+.
T Consensus        22 ~~~~~~~~l~~~~~~i~~l-~~sl~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~   97 (198)
T d1m9la_          22 ATEAEKVELHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIE-NLDAVADTLEE   97 (198)
T ss_dssp             CTTCSCEECCBCCTTCCCC-HHHHHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEEEECSCS-SHHHHHHHCCE
T ss_pred             ccccceeeeecccCchhhh-hhHHhcccccceeECcccCCCCccc--ccCCccccChhhccccccccc-ccccccccccc
Confidence            345566677654  34444 3568899999999999999999864  788999999999999999874 34455678999


Q ss_pred             eeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCc-ccccccccccEEEccCCcCcc
Q psy1672         152 LDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPV-RSVEPLLKLMMIELHDNPWVC  209 (600)
Q Consensus       152 L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~l~~N~~~C  209 (600)
                      |++++|+|+.+  ..+..+++|+.|+|++|+|+.++. ..+..+++|+.|++.+|++.+
T Consensus        98 L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_          98 LWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            99999999988  357789999999999999998763 567889999999999998654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=3.3e-10  Score=94.90  Aligned_cols=85  Identities=22%  Similarity=0.425  Sum_probs=60.2

Q ss_pred             ccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCc----cceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         264 VEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSS----YQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~----~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      ..+..|+.++|.|.+. |.|.+++.|+++++.+........    .......     ...+.|.|.+++..|+|.|+|.|
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~I~~v~~~D~G~Y~C~a   86 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTID-----PKSGDLIFDPVTAFDSGEYYCQA   86 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEEC-----TTTCCEEESSCCGGGCEEEEEEE
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEe-----ecccceEECCCCccCCEEEEEEE
Confidence            3567899999999986 899999999999887654321100    0001110     12357999999999999999999


Q ss_pred             ecCCCceeEEEEEEE
Q psy1672         339 ENRAGIADANFTLQV  353 (600)
Q Consensus       339 ~N~~G~~~~~v~L~V  353 (600)
                      +|..|.+.++..+++
T Consensus        87 ~N~~G~~~~s~~v~l  101 (110)
T d1f97a2          87 QNGYGTAMRSEAAHM  101 (110)
T ss_dssp             ECSSSCCEECCCEEE
T ss_pred             EECCCcEEEEEEEEE
Confidence            999998866544444

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=5.3e-10  Score=92.22  Aligned_cols=98  Identities=11%  Similarity=0.265  Sum_probs=67.6

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEe-eCCceeeeeeEEEecCCCCCCeE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVI-EQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~-~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |.+...+..+.+.+|+.+.|.|.+.|.|.|.|.|++.+.........  ..+.... .+......+.|.|.+++.+|+|.
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~   79 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCY--NSQITAPYADRVTFSSSGITFSSVTRKDNGE   79 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEE--TTEECGGGTTTEEEETTEEEESCCCGGGCEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeecc--ccccccceeeEEEecCCEEEEeECCccCCEE
Confidence            34455566788899999999999999999999999854322111100  0000000 00001123479999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      |+|.|.|..|.....+.+.+.
T Consensus        80 Y~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          80 YTCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            999999999999888777764

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.1e-10  Score=96.86  Aligned_cols=89  Identities=19%  Similarity=0.309  Sum_probs=63.3

Q ss_pred             cccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         263 YVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ...+..|+.++|.|.+. |.|.+.+.|+++++.+.............  ........+.|.|.+++..|.|.|+|.|.|.
T Consensus        11 ~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~   88 (104)
T d1nbqa2          11 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS--SYVLNPTTGELVFDPLSASDTGEYSCEARNG   88 (104)
T ss_dssp             BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTC--CCCCCTTTCCEEESSCCGGGCCCEEEEEECS
T ss_pred             CCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCC--cEEEeecccceEECCCCcccCcEEEEEEEEC
Confidence            34567899999999985 89999999999998775543211100000  0000112457999999999999999999999


Q ss_pred             CCceeEEEEEEE
Q psy1672         342 AGIADANFTLQV  353 (600)
Q Consensus       342 ~G~~~~~v~L~V  353 (600)
                      .|.+..+..+++
T Consensus        89 ~G~~~~s~~v~v  100 (104)
T d1nbqa2          89 YGTPMTSNAVRM  100 (104)
T ss_dssp             SSCCEECCCBCC
T ss_pred             CCceEEEEEEEE
Confidence            999877655544

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.8e-10  Score=94.34  Aligned_cols=95  Identities=8%  Similarity=0.261  Sum_probs=66.1

Q ss_pred             cccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCc-eeeeeeEEEecCCCCCCeEEE
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGE-YERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~-~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      +...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+.......  ........+. ....+.|.|.+++.+|+|.|+
T Consensus         7 V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (105)
T d1nbqa1           7 VHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYN--NKITASYEDRVTFLPTGITFKSVTREDTGTYT   84 (105)
T ss_dssp             EECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEET--TEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred             EECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeecc--ceeeccccceeeecCceEEEecccccceeeEE
Confidence            3344566788899999999999999999999999654433211100  0000000000 112247999999999999999


Q ss_pred             EEEecCCCceeEEEEEEE
Q psy1672         336 CVAENRAGIADANFTLQV  353 (600)
Q Consensus       336 C~a~N~~G~~~~~v~L~V  353 (600)
                      |.|.|..|.+...+.+.+
T Consensus        85 C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          85 CMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             EEEEETTSSCEECCEEEC
T ss_pred             EEEEECCCCEEEEEEEEE
Confidence            999999999987776665

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.3e-09  Score=88.75  Aligned_cols=86  Identities=20%  Similarity=0.234  Sum_probs=60.2

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      ...+.+..|+.++|.|.+.|.|.|.+.|++ +.......     ..+.......  ...+.|.|.+++.+|.|.|+|+|.
T Consensus         8 ~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           8 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP-----LKEIKVTSSR--RFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             CCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCC-----EEEEEEEETT--EEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeec-----CCceeEEEee--cCceEEEECCCCHHHCeEEEEEEE
Confidence            567788999999999999999988776654 22111111     1112211211  124579999999999999999999


Q ss_pred             cCCCceeEE-EEEEE
Q psy1672         340 NRAGIADAN-FTLQV  353 (600)
Q Consensus       340 N~~G~~~~~-v~L~V  353 (600)
                      |..|.+..+ +.|.|
T Consensus        81 N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          81 TEGGVGISNYAELVV   95 (96)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCeEEEEEEEEEE
Confidence            999987554 56665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.95  E-value=8.8e-09  Score=103.32  Aligned_cols=138  Identities=23%  Similarity=0.360  Sum_probs=102.2

Q ss_pred             ceEEEccCCCCCccCCCCCCCCceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccC
Q psy1672          29 KQWMECRDKFLITIPEAPESELTQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSD  108 (600)
Q Consensus        29 ~~~v~C~~~~L~~ip~~~~~~~l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~  108 (600)
                      -..+++.+.+|+.+|+.++ . +++|+|++|+|+.+|..      +.+|+.|++++|+++.+..  +  .+.|++|++++
T Consensus        40 l~~LdLs~~~L~~lp~~~~-~-L~~L~Ls~N~l~~lp~~------~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~~  107 (353)
T d1jl5a_          40 AHELELNNLGLSSLPELPP-H-LESLVASCNSLTELPEL------PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSN  107 (353)
T ss_dssp             CSEEECTTSCCSCCCSCCT-T-CSEEECCSSCCSSCCCC------CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCS
T ss_pred             CCEEEeCCCCCCCCCCCCC-C-CCEEECCCCCCcccccc------hhhhhhhhhhhcccchhhh--h--ccccccccccc
Confidence            4578999999999997543 3 99999999999999853      4689999999999988753  2  24699999999


Q ss_pred             CCCCCCCccccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCC
Q psy1672         109 NLLTSIPSLTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHF  186 (600)
Q Consensus       109 N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  186 (600)
                      |.|+.++.  +..+.+|+.|++++|.+.....    ....+..+.+..+.....  ..+..+..++.|++.+|.+..+
T Consensus       108 n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~~--~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         108 NQLEKLPE--LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             SCCSSCCC--CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSSC
T ss_pred             cccccccc--hhhhccceeecccccccccccc----ccccccchhhcccccccc--ccccccccceeccccccccccc
Confidence            99999985  5678999999999998876533    234455555555544333  2345566667777766665544

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=8.1e-10  Score=89.55  Aligned_cols=78  Identities=17%  Similarity=0.267  Sum_probs=60.6

Q ss_pred             cccccccccccccccccceeeeEeecCCC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |.+...+..+.+..|+.+.|.|.+.+.|+ ++|.|+++++.+....      +.....++      .|.|.+++.+|.|.
T Consensus         7 P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~------~~~~~~~~------~L~I~~v~~~D~G~   74 (93)
T d1n26a1           7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP------SRWAGMGR------RLLLRSVQLHDSGN   74 (93)
T ss_dssp             CCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCC------EEEEEESS------EEEECSCCGGGCEE
T ss_pred             CcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEcccccccee------eEEecCCC------EEEECCCChhcCEE
Confidence            55566667788889999999999998765 5899999987765322      33333333      79999999999999


Q ss_pred             EEEEEecCCCc
Q psy1672         334 FYCVAENRAGI  344 (600)
Q Consensus       334 Y~C~a~N~~G~  344 (600)
                      |+|.|.|..+.
T Consensus        75 Y~C~a~n~~~~   85 (93)
T d1n26a1          75 YSCYRAGRPAG   85 (93)
T ss_dssp             EEEESSSSCSC
T ss_pred             EEEEECCcccc
Confidence            99999987643

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=6.1e-10  Score=90.83  Aligned_cols=83  Identities=18%  Similarity=0.384  Sum_probs=64.6

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ....+.+|+.++|.|.+.+ +.+.+.|+++++.+....      +..+...+     +.|.|.+++..|.|.|+|.|.|.
T Consensus        11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~------~~~~~~~~-----~~L~I~~v~~~d~G~Y~C~a~N~   78 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTE------RMTLSQNN-----SILRIDPIKREDAGEYQCEISNP   78 (96)
T ss_dssp             SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCT------TEEEETTT-----TEEEECSCCGGGCEEEEEEEESS
T ss_pred             CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeeccccc------ceeccCCc-----eEEEEeccchhhceEEEEEEEeC
Confidence            4456788999999999876 568999999998876543      33333332     37999999999999999999999


Q ss_pred             CCcee-EEEEEEEEEc
Q psy1672         342 AGIAD-ANFTLQVTYR  356 (600)
Q Consensus       342 ~G~~~-~~v~L~V~~~  356 (600)
                      .|... ..+.|.|.+.
T Consensus        79 ~g~~~S~~~~L~V~~~   94 (96)
T d1l6za2          79 VSVRRSNSIKLDIIFD   94 (96)
T ss_dssp             SCCEECCCCEEEECCS
T ss_pred             CCCeEEEeEEEEEEcC
Confidence            99874 4678887543

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5.2e-10  Score=90.56  Aligned_cols=79  Identities=19%  Similarity=0.289  Sum_probs=61.2

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...+.+|+++.|.|.+.| |.|.+.|+++|+.+....     .+..+..+      +.|.|.+++.+|+|.|+|.|.|.+
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~-----~~~~~~~~------~~L~I~~v~~~DsG~Y~C~A~n~~   73 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAES-----PKYGLMGR------KNLLIFNLSEGDSGVYQCLSEERV   73 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCS-----SSBCCTTT------TCEEECSCCGGGCEEEEEEEEEEC
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeee-----eeeeccee------eEEEECCCCHHHCcEEEEEEEEcC
Confidence            456789999999999998 778999999998876533     12222223      369999999999999999999999


Q ss_pred             CceeEEEEEEE
Q psy1672         343 GIADANFTLQV  353 (600)
Q Consensus       343 G~~~~~v~L~V  353 (600)
                      |..+....+.+
T Consensus        74 g~~~~~~~l~~   84 (92)
T d1olza1          74 KNKTVFQVVAK   84 (92)
T ss_dssp             SSSEEEEEEEE
T ss_pred             CCEEEEEEEEE
Confidence            98765544433

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.2e-10  Score=96.81  Aligned_cols=93  Identities=25%  Similarity=0.380  Sum_probs=68.5

Q ss_pred             cccccccccccccceeeeEeecCC-CCeeEEEEcCeeccCCcccCccceEEEeeCC-ceeeeeeEEEecCCCCC-CeEEE
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIP-PAAISWYWNGRLLLNNTAFSSYQRIFVIEQG-EYERKSSLVLTNAQESD-SGRFY  335 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P-~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g-~~~~~s~L~I~~v~~~d-~G~Y~  335 (600)
                      ..+....+.+|+.+.|.|.+.+.| .+.+.|+++++.+.....    .+..+.... .....+.|.|.+++..| .|.|+
T Consensus        11 ~~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~----~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~   86 (115)
T d2crya1          11 SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTS----GRYTVETISTEEGVISTLTISNIVRADFQTIYN   86 (115)
T ss_dssp             EEECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEE----TTEEEEEEEETTEEEEEEECTTCCHHHHHSCEE
T ss_pred             ecCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeee----eeEeeeeeccccCcEEEEEEeccchhcCCeEEE
Confidence            345566788999999999999865 557999999887765431    222222111 11234579999999999 58999


Q ss_pred             EEEecCCCceeEEEEEEEEE
Q psy1672         336 CVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       336 C~a~N~~G~~~~~v~L~V~~  355 (600)
                      |+|.|..|.+++.+.|.|..
T Consensus        87 C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          87 CTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             EEEECSSCEEEEEECCCCSC
T ss_pred             EEEEECCCeEEEEEEEEEEC
Confidence            99999999999999888753

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.9e-09  Score=85.64  Aligned_cols=84  Identities=20%  Similarity=0.363  Sum_probs=62.7

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      ......++..|+.+.|.|.+ +.|.+.+.|+++++.+....    ..++.+..++.   ...|.|.+++.+|.|.|+|.|
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~----~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a   76 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGP----KSRYRIRVEGK---KHILIIEGATKADAAEYSVMT   76 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCST----TCSEEEEEETT---EEEEEEEEECTTTCSEEEEEE
T ss_pred             cCCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCC----CccEEEEEeCC---ccEEEECccccccCEEEEEEE
Confidence            34567788999999999999 56889999999998876543    22344444432   347999999999999999999


Q ss_pred             ecCCCceeEEEEEEEE
Q psy1672         339 ENRAGIADANFTLQVT  354 (600)
Q Consensus       339 ~N~~G~~~~~v~L~V~  354 (600)
                      .|.    ..+..|.|.
T Consensus        77 ~n~----~~~a~l~V~   88 (90)
T d1x44a1          77 TGG----QSSAKLSVD   88 (90)
T ss_dssp             TTE----EEEEEEEEE
T ss_pred             ecc----eEEEEEEEE
Confidence            884    444555553

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.89  E-value=9.6e-10  Score=91.29  Aligned_cols=80  Identities=18%  Similarity=0.277  Sum_probs=61.9

Q ss_pred             ccccccccccceeeeEe-ecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         262 RYVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      ..+.+.+|+.+.|.|.+ .+.|.+.|.|++++..+....    ..+......     .+.|.|.+++.+|.|.|+|.|.|
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~----~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~N   82 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPA----DGRRFVSQT-----TGNLYIAKTEASDLGNYSCFATS   82 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCC----CSSEEECTT-----TCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccc----cceeeeecC-----CCEEeecccccccCcEEEEEEEE
Confidence            45778999999999998 589999999999887654322    223322222     23799999999999999999999


Q ss_pred             CCCceeEEEE
Q psy1672         341 RAGIADANFT  350 (600)
Q Consensus       341 ~~G~~~~~v~  350 (600)
                      ..|..++.+.
T Consensus        83 ~~g~~~~~v~   92 (105)
T d1cs6a2          83 HIDFITKSVF   92 (105)
T ss_dssp             EETTEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9998876643

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.88  E-value=1.2e-09  Score=87.83  Aligned_cols=77  Identities=13%  Similarity=0.184  Sum_probs=59.4

Q ss_pred             cccccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         261 SRYVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      +....+.+|+.++|.|.+. +.|.+.+.|+++|+.+....                 ..+.+.|.+++.+|+|.|+|.|.
T Consensus         9 ~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~-----------------~~~~l~I~~v~~~dsG~Y~C~a~   71 (89)
T d1fnla2           9 APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH-----------------HNSDFHIPKATLKDSGSYFCRGL   71 (89)
T ss_dssp             CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE-----------------ECCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceec-----------------cccccEECccceeccceEEEEEE
Confidence            3445678999999999997 45667899999987654211                 12368999999999999999999


Q ss_pred             cCCCce-eEEEEEEEE
Q psy1672         340 NRAGIA-DANFTLQVT  354 (600)
Q Consensus       340 N~~G~~-~~~v~L~V~  354 (600)
                      |..|.. +..+.|.|.
T Consensus        72 n~~~~~~S~~v~itV~   87 (89)
T d1fnla2          72 VGSKNVSSETVNITIT   87 (89)
T ss_dssp             ETTEEEECCCEEEEEE
T ss_pred             eCCCCeEEeeEEEEEE
Confidence            998865 355677664

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.86  E-value=1.5e-09  Score=87.04  Aligned_cols=76  Identities=17%  Similarity=0.283  Sum_probs=58.8

Q ss_pred             ccccccccccceeeeEeec-CCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         262 RYVEAVSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      ....+.+|+.++|.|.+.+ .|.+.+.|+++|+.+....                 ....|.|.+++.+|+|.|+|.|.|
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~-----------------~~~~l~i~~v~~~dsG~Y~C~a~n   70 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR-----------------SDPNFSIPQANHSHSGDYHCTGNI   70 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES-----------------SCCEEEETTCCGGGCEEEEEEEEE
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc-----------------cccccccCccCHHHCCeEEEEEEe
Confidence            3455778999999999974 5667999999987654211                 123689999999999999999999


Q ss_pred             CCCce-eEEEEEEEE
Q psy1672         341 RAGIA-DANFTLQVT  354 (600)
Q Consensus       341 ~~G~~-~~~v~L~V~  354 (600)
                      ..|.. +..+.|.|.
T Consensus        71 ~~g~~~S~~v~l~V~   85 (88)
T d2fcba2          71 GYTLYSSKPVTITVQ   85 (88)
T ss_dssp             TTEEEECCCEEEEEC
T ss_pred             CCCCEEeeeEEEEEe
Confidence            99865 355666663

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.6e-09  Score=89.19  Aligned_cols=87  Identities=21%  Similarity=0.332  Sum_probs=66.3

Q ss_pred             cccccccccccceeeeEee-cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         261 SRYVEAVSSENATVVCRVD-SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~-g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      +..+.+..|+.+.|.|.+. +.|.++|.|++++..+.....  ...++  ...     .+.|.|.+++..|+|.|+|+|.
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~--~~~~~--~~~-----~~~L~I~~v~~~D~G~Y~C~a~   79 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE--QASRI--HQH-----KEKLWFVPAKVEDSGHYYCVVR   79 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCC--TTSSE--EEE-----TTEEEETTCCGGGCEEEEEEEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccc--cceEE--ecc-----CCEEEeccceecCCEEEEEEEE
Confidence            4456677899999999886 789999999998754432211  11112  111     2379999999999999999999


Q ss_pred             cCCCceeEEEEEEEEEc
Q psy1672         340 NRAGIADANFTLQVTYR  356 (600)
Q Consensus       340 N~~G~~~~~v~L~V~~~  356 (600)
                      |..|.....+.|.|..+
T Consensus        80 N~~g~~~~~~~L~V~~~   96 (101)
T d1iray1          80 NSSYCLRIKISAKFVEN   96 (101)
T ss_dssp             ETTEEEEEEEEEEEECC
T ss_pred             CCCCeEEEEEEEEEEeC
Confidence            99999999999999754

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.2e-09  Score=86.12  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=60.3

Q ss_pred             cccccccccccceeeeEeecC-CCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         261 SRYVEAVSSENATVVCRVDSI-PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      +....+.+|+.++|.|.+.+. |..++.|+++|+.+....                 ..+.|.|.+++.+|+|.|+|.|.
T Consensus         7 ~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~-----------------~~~~l~i~~~~~~dsG~Y~C~a~   69 (89)
T d1f2qa2           7 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-----------------ENHNISITNATVEDSGTYYCTGK   69 (89)
T ss_dssp             ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-----------------CSSEEEESSCCGGGCEEEEEEEE
T ss_pred             CCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc-----------------ccceEEEeeeeeecCcEEEEEEE
Confidence            344557789999999999765 556899999998775422                 12368999999999999999999


Q ss_pred             cCCCce-eEEEEEEEEE
Q psy1672         340 NRAGIA-DANFTLQVTY  355 (600)
Q Consensus       340 N~~G~~-~~~v~L~V~~  355 (600)
                      |..|.. +..+.|.|.+
T Consensus        70 n~~~~~~S~~v~i~V~~   86 (89)
T d1f2qa2          70 VWQLDYESEPLNITVIK   86 (89)
T ss_dssp             ETTEEEECCCEEEEEEC
T ss_pred             eCCCCeEeeeEEEEEEe
Confidence            988764 4556777754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.81  E-value=3.2e-08  Score=99.13  Aligned_cols=137  Identities=20%  Similarity=0.239  Sum_probs=108.8

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEEc
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNL  130 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  130 (600)
                      +++|+|+++.|+.+|+      .+++|++|+|++|+|+.++.    .+.+|+.|++++|.++.++.  +  .+.|++|++
T Consensus        40 l~~LdLs~~~L~~lp~------~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L  105 (353)
T d1jl5a_          40 AHELELNNLGLSSLPE------LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSD--L--PPLLEYLGV  105 (353)
T ss_dssp             CSEEECTTSCCSCCCS------CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCS--C--CTTCCEEEC
T ss_pred             CCEEEeCCCCCCCCCC------CCCCCCEEECCCCCCccccc----chhhhhhhhhhhcccchhhh--h--ccccccccc
Confidence            7899999999999984      25789999999999998853    24689999999999998865  1  246999999


Q ss_pred             cCCCCCccCcccccCCCCcceeeCCCCcCcccChhhhcCCCCCCEEEcCCCcCCCCCcccccccccccEEEccCCcCcc
Q psy1672         131 ARNPISKIEKGAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLESIKLNGNRLSHFPVRSVEPLLKLMMIELHDNPWVC  209 (600)
Q Consensus       131 s~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~l~~N~~~C  209 (600)
                      ++|.+..++.  +..+++|+.|+++++.+.....    ....+..+.+..+.....  ..+..+..++.+.+..|....
T Consensus       106 ~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~~--~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         106 SNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccccccc--hhhhccceeecccccccccccc----ccccccchhhcccccccc--ccccccccceecccccccccc
Confidence            9999998854  5678999999999999887643    346677888877665544  345667788889988887543

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.8e-09  Score=86.53  Aligned_cols=77  Identities=18%  Similarity=0.288  Sum_probs=58.8

Q ss_pred             cccccccceeee------EeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         265 EAVSSENATVVC------RVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       265 ~v~~G~~v~L~C------~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      .+..|....|.|      .+.+.|.|.|.|+++|+.+....      +.....++      .|.|.+++.+|.|.|+|.|
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~------~~~~~~~~------~L~I~~v~~~D~G~Y~C~a   77 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDN------IHFSGVKD------RLIVMNVAEKHRGNYTCHA   77 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCS------SSEEEETT------EEEESSCCGGGCEEEEEEE
T ss_pred             EEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCC------cEEEecCC------EEEEcccccccCcEEEEEE
Confidence            466789999999      66799999999999999886533      11222333      7999999999999999999


Q ss_pred             ecCCCceeEEEEEEE
Q psy1672         339 ENRAGIADANFTLQV  353 (600)
Q Consensus       339 ~N~~G~~~~~v~L~V  353 (600)
                      .|..|....+++..+
T Consensus        78 ~n~~~g~~~~vt~~i   92 (103)
T d1iray2          78 SYTYLGKQYPITRVI   92 (103)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EECcCCEEEEEEEEE
Confidence            998876544433333

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.77  E-value=2.7e-09  Score=89.48  Aligned_cols=86  Identities=16%  Similarity=0.182  Sum_probs=62.1

Q ss_pred             cccccccccceeeeEe-ecCCCCeeEEEEcCeeccCCcccC-ccceEEEeeCCceeeeeeEEEecCCCCCCe---EEEEE
Q psy1672         263 YVEAVSSENATVVCRV-DSIPPAAISWYWNGRLLLNNTAFS-SYQRIFVIEQGEYERKSSLVLTNAQESDSG---RFYCV  337 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v-~g~P~p~i~W~~~g~~l~~~~~~~-~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G---~Y~C~  337 (600)
                      ..++.+|+.++|.|++ .|.|.|.+.|++++..+....... ...++....+      +.|.|.+++..|+|   .|+|.
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~------~~L~i~~v~~~D~gd~g~Y~C~   84 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD------GNLYFTIVTKEDVSDIYKYVCT   84 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTT------SCEEEEEECGGGCCSSEEEEEE
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccc------cccEEeeeEeeccCCceEEEEE
Confidence            3456789999999997 799999999999776543322111 1122333333      37999999988776   79999


Q ss_pred             EecCCCceeEEEEEEEE
Q psy1672         338 AENRAGIADANFTLQVT  354 (600)
Q Consensus       338 a~N~~G~~~~~v~L~V~  354 (600)
                      |+|.+|.++..+.+++.
T Consensus        85 A~N~~g~~~~~~~~~~i  101 (111)
T d1biha2          85 AKNAAVDEEVVLVEYEI  101 (111)
T ss_dssp             EECTTCSSCEEEEEEEE
T ss_pred             EEeCCCCceEEEEEEEe
Confidence            99999998877655553

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.77  E-value=2e-09  Score=86.44  Aligned_cols=77  Identities=26%  Similarity=0.271  Sum_probs=60.4

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEE
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCV  337 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~  337 (600)
                      ......+++.+|+.+.|.|.+ +.|.|.+.|+++|+.+....      +..+..++.   ...|.|.+++..|+|.|+|.
T Consensus         5 ~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~------~~~~~~~~~---~~~L~I~~~~~~D~G~Y~c~   74 (89)
T d1tiua_           5 EKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASP------DCEIIEDGK---KHILILHNCQLGMTGEVSFQ   74 (89)
T ss_dssp             SBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSS------SCEEEECSS---CEEEECCSCCSCCCSEECCB
T ss_pred             EcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccce------eEEEEeece---eEEEEEcCCChhcCEEEEEE
Confidence            344567889999999999998 57889999999998876543      333444432   34799999999999999999


Q ss_pred             EecCCCc
Q psy1672         338 AENRAGI  344 (600)
Q Consensus       338 a~N~~G~  344 (600)
                      |.|..+.
T Consensus        75 a~n~~~s   81 (89)
T d1tiua_          75 AANAKSA   81 (89)
T ss_dssp             CSSCBCC
T ss_pred             ECceEEE
Confidence            9886554

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.71  E-value=1e-08  Score=81.41  Aligned_cols=77  Identities=22%  Similarity=0.515  Sum_probs=59.8

Q ss_pred             ccccccccccccccccceeeeEeecCCCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDSIPPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g~P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      .+...+....+.+|+.++|.|.+.+.|.+ .+.|+++|+.+....                   ..|.|.+++.+|+|.|
T Consensus         6 ~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~-------------------~~l~i~~v~~~dsG~Y   66 (85)
T d2fcba1           6 VLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT-------------------QPSYRFKANNNDSGEY   66 (85)
T ss_dssp             EEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC-------------------SSEEEEECCGGGCEEE
T ss_pred             EEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc-------------------cceEEeeccccCCcEE
Confidence            44455666788899999999999988876 588888988765322                   2688999999999999


Q ss_pred             EEEEecCCCceeEEEEEEE
Q psy1672         335 YCVAENRAGIADANFTLQV  353 (600)
Q Consensus       335 ~C~a~N~~G~~~~~v~L~V  353 (600)
                      +|.|.|..++.  .+.|.|
T Consensus        67 ~C~a~ns~~S~--~v~l~V   83 (85)
T d2fcba1          67 TCQTGQTSLSD--PVHLTV   83 (85)
T ss_dssp             EEECTTSBCCC--CEEEEE
T ss_pred             EEECCCCcccc--cEEEEE
Confidence            99999976544  345554

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.1e-08  Score=81.10  Aligned_cols=78  Identities=15%  Similarity=0.283  Sum_probs=57.3

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...+..|+.+.|.|.+. .|.+.+.|+++|+.+....     .+..+...+   ....|.|.+++..|.|.|+|.|.|. 
T Consensus        15 ~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~-----~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~c~a~n~-   84 (94)
T d1pd6a_          15 AYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSG-----SKYIFESIG---AKRTLTISQCSLADDAAYQCVVGGE-   84 (94)
T ss_dssp             EEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCS-----SSSEEEEET---TEEEEEECSCSSSSCEEEEEEETTE-
T ss_pred             CEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeee-----eeEeeeccC---CeEEeecCCCCceecEEEEEEEeeE-
Confidence            45678999999999984 5889999999999886432     122222222   1347999999999999999999875 


Q ss_pred             CceeEEEEEEE
Q psy1672         343 GIADANFTLQV  353 (600)
Q Consensus       343 G~~~~~v~L~V  353 (600)
                         ..++.|.|
T Consensus        85 ---~~s~~l~V   92 (94)
T d1pd6a_          85 ---KCSTELFV   92 (94)
T ss_dssp             ---EECCEEEE
T ss_pred             ---EEEEEEEE
Confidence               34445554

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=8.9e-09  Score=81.12  Aligned_cols=78  Identities=26%  Similarity=0.479  Sum_probs=56.5

Q ss_pred             cccccccccccccccccceeeeEeecCCCCe-eEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAA-ISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~-i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |.+...+....+.+|+.++|.|.+.+.|.+. +.|++++..+....                   ..|.|.+++..|+|.
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~l~i~~v~~~d~G~   62 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN-------------------SSLNIVNAKFEDSGE   62 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS-------------------SEEEECSCCGGGCEE
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc-------------------ceeEECCCChhhCCc
Confidence            5566667677788999999999999998875 45566776554221                   268999999999999


Q ss_pred             EEEEEecCCCceeEEEEEEE
Q psy1672         334 FYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       334 Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      |+|.|.|..+.+  .+.|.|
T Consensus        63 Y~C~a~~s~~S~--~v~l~V   80 (82)
T d1f2qa1          63 YKCQHQQVNESE--PVYLEV   80 (82)
T ss_dssp             EEEECTTSSCCC--CEEEEE
T ss_pred             EEEEecCCCCcc--cEEEEE
Confidence            999999976654  455555

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.66  E-value=1.6e-08  Score=80.07  Aligned_cols=72  Identities=18%  Similarity=0.391  Sum_probs=55.5

Q ss_pred             cccccccccccccccccceeeeEeecCCCCee-EEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAI-SWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i-~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |.+...+....+.+|+.++|.|.+.+.|.+.+ .|++++..+....                   ..|.|.+++..|+|.
T Consensus         6 pvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~l~i~~~~~~d~G~   66 (84)
T d1fnla1           6 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA-------------------SSYFIDAATVNDSGE   66 (84)
T ss_dssp             CEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC-------------------SEEEESSCCGGGCEE
T ss_pred             CEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecc-------------------eeeEecCCcccCCEE
Confidence            34455566778899999999999999998864 5566776543211                   268999999999999


Q ss_pred             EEEEEecCCCce
Q psy1672         334 FYCVAENRAGIA  345 (600)
Q Consensus       334 Y~C~a~N~~G~~  345 (600)
                      |+|.|.|..++.
T Consensus        67 Y~C~a~~s~~S~   78 (84)
T d1fnla1          67 YRCQTNLSTLSD   78 (84)
T ss_dssp             EEEECSSSCCCC
T ss_pred             EEEEccCCCccc
Confidence            999999876543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.6e-09  Score=103.35  Aligned_cols=153  Identities=18%  Similarity=0.177  Sum_probs=101.7

Q ss_pred             ceEEEeeCCCCCC-CChhhhcccCCCCccEEEeecccCcccCccccCCCCCccEEEccCC-CCCCCC-ccccCCCCCCCE
Q psy1672          51 TQVLDMSGNNLQI-LPKEAFRRAGLLNLQKLFLARCHIGQIDSGALDGLTNLIEIDLSDN-LLTSIP-SLTFQSVRFLRD  127 (600)
Q Consensus        51 l~~L~Ls~n~L~~-l~~~~f~~~~l~~L~~L~L~~n~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~  127 (600)
                      +++|+++++.+.. .....+.  .+++|++|+|++|.+.......+..+++|++|+|+++ .++... ...+..+++|++
T Consensus        48 L~~LdLs~~~i~~~~l~~l~~--~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          48 VQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             CCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCEEECCCCccCHHHHHHHHH--hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            8999999888763 2233454  7899999999999887655667888999999999985 565321 112345788999


Q ss_pred             EEccCCC-CCccCc-ccc-cCCCCcceeeCCCC--cCcccC-hhhhcCCCCCCEEEcCCC-cCCCCCcccccccccccEE
Q psy1672         128 LNLARNP-ISKIEK-GAF-QFVPGLVKLDMSES--RLEHIS-PEAFTGAKSLESIKLNGN-RLSHFPVRSVEPLLKLMMI  200 (600)
Q Consensus       128 L~Ls~N~-i~~l~~-~~~-~~l~~L~~L~Ls~n--~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L  200 (600)
                      |+++++. ++.... ..+ ...++|+.|+++++  .++... ...+..+++|++|+|++| .++......+..+++|+.|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            9998863 432111 112 23467888888764  333321 122345788888888875 4555445566677888888


Q ss_pred             EccCC
Q psy1672         201 ELHDN  205 (600)
Q Consensus       201 ~l~~N  205 (600)
                      ++.++
T Consensus       206 ~L~~C  210 (284)
T d2astb2         206 SLSRC  210 (284)
T ss_dssp             ECTTC
T ss_pred             ECCCC
Confidence            88774

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.8e-08  Score=81.85  Aligned_cols=86  Identities=12%  Similarity=0.137  Sum_probs=62.9

Q ss_pred             ccccccccccccccccceeeeEeec-CCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         256 EIRMDSRYVEAVSSENATVVCRVDS-IPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       256 ~i~~~~~~~~v~~G~~v~L~C~v~g-~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      .+...+....+..|+.++|.|.+.| .|.+  .+.|+++++.+.....            ......+.|.|..+...|.|
T Consensus         6 ~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~------------~~~~~~s~l~i~~~~~dd~g   73 (103)
T d1iama1           6 RVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA------------VGEPAEVTTTVLVRRDHHGA   73 (103)
T ss_dssp             EEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC------------CTTTEEEEEEEECCSSCSSC
T ss_pred             ceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc------------ccccceEEEEEeeehhHCCC
Confidence            3344445556778999999999996 5655  4779888877643221            11123467899999999999


Q ss_pred             EEEEEEecCCCceeEEEEEEE
Q psy1672         333 RFYCVAENRAGIADANFTLQV  353 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~~~v~L~V  353 (600)
                      .|+|.|+|.+|.....+.+.+
T Consensus        74 ~ytC~A~n~~g~~~~~~~~~~   94 (103)
T d1iama1          74 QFSCRTELDLRPQGLELFENT   94 (103)
T ss_dssp             EEEEEEEEECGGGTSCEEEEE
T ss_pred             EEEEEEEeCCCCccCeEeeeE
Confidence            999999999998876666665

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=5.3e-07  Score=76.46  Aligned_cols=96  Identities=20%  Similarity=0.293  Sum_probs=63.6

Q ss_pred             ccccccccccccceeeeEeecCC---CCeeEEEEcCee-----ccCC-----ccc-CccceEEEeeCCceeeeeeEEEec
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIP---PAAISWYWNGRL-----LLNN-----TAF-SSYQRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P---~p~i~W~~~g~~-----l~~~-----~~~-~~~~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      +...+.+..|++++|.|.+.+..   ...|.|++.+..     ....     ... ....+..+..+.......+|.|.+
T Consensus         8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   87 (126)
T d1pkoa_           8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   87 (126)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEE
Confidence            34457888999999999876322   346899985321     0000     000 112234443333223356899999


Q ss_pred             CCCCCCeEEEEEEecCCCceeEEEEEEEEE
Q psy1672         326 AQESDSGRFYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       326 v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      ++.+|+|.|+|.+.+..+..++.+.|.|..
T Consensus        88 v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~  117 (126)
T d1pkoa_          88 VRFSDEGGYTCFFRDHSYQEEAAVELKVED  117 (126)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EchhHCeEEEEEEEECCCEEEEEEEEEEeC
Confidence            999999999999999988888888888854

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=6e-08  Score=80.24  Aligned_cols=85  Identities=16%  Similarity=0.166  Sum_probs=58.2

Q ss_pred             ccccccccccceeeeEeec-CC--CCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEE
Q psy1672         262 RYVEAVSSENATVVCRVDS-IP--PAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVA  338 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g-~P--~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a  338 (600)
                      ....+..|+.++|.|.+.| .|  .++|.|+++++.+........       ........+.|.+......|.|.|+|.|
T Consensus        10 ~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~-------~~~~~~~~s~l~~~~~~~d~g~~ytC~A   82 (106)
T d1zxqa1          10 QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKA-------APAPQEATATFNSTADREDGHRNFSCLA   82 (106)
T ss_dssp             ESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSS-------TTCTTCEEEEEEEECCGGGGGCEEEEEE
T ss_pred             CCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceE-------eecccceeEEEEEeeehhcCCcEEEEEE
Confidence            3445778999999999986 44  458999999988754321110       0111223456777777777778999999


Q ss_pred             ecCCCceeEEEEEEE
Q psy1672         339 ENRAGIADANFTLQV  353 (600)
Q Consensus       339 ~N~~G~~~~~v~L~V  353 (600)
                      +|.+|.....+.+.+
T Consensus        83 ~n~~~~~~~~~~~~~   97 (106)
T d1zxqa1          83 VLDLMSRGGNIFHKH   97 (106)
T ss_dssp             EEECGGGTCCEEEEE
T ss_pred             EecCCCCCCeeEecc
Confidence            999987766665555

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=3.7e-07  Score=76.99  Aligned_cols=103  Identities=21%  Similarity=0.314  Sum_probs=67.1

Q ss_pred             CcccccccccccccccccccceeeeEeecCCC----CeeEEEEcCeeccC----------C----cccC-ccceEEEeeC
Q psy1672         252 ACKPEIRMDSRYVEAVSSENATVVCRVDSIPP----AAISWYWNGRLLLN----------N----TAFS-SYQRIFVIEQ  312 (600)
Q Consensus       252 ~C~p~i~~~~~~~~v~~G~~v~L~C~v~g~P~----p~i~W~~~g~~l~~----------~----~~~~-~~~~~~~~~~  312 (600)
                      ++...+..+...+.+..|++++|.|.+...+.    ..+.|++.......          .    .... ...|..+..+
T Consensus         2 ~~~l~Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~   81 (124)
T d1eaja_           2 ARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSN   81 (124)
T ss_dssp             CSSCEESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCS
T ss_pred             CcceEEEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEcc
Confidence            44555555556788889999999999874432    35789872211000          0    0001 1123333332


Q ss_pred             CceeeeeeEEEecCCCCCCeEEEEEEecCCCceeEEEEEEEE
Q psy1672         313 GEYERKSSLVLTNAQESDSGRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       313 g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      ........|.|.+++.+|+|.|.|.+.+..|.....+.|.|.
T Consensus        82 ~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          82 DLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            222234679999999999999999999999988888888774

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=3.4e-07  Score=74.36  Aligned_cols=86  Identities=13%  Similarity=0.171  Sum_probs=59.6

Q ss_pred             cccccccccceeeeEee--cCCCCeeEEEEcCeeccCCc----ccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEE
Q psy1672         263 YVEAVSSENATVVCRVD--SIPPAAISWYWNGRLLLNNT----AFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYC  336 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~--g~P~p~i~W~~~g~~l~~~~----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C  336 (600)
                      .+....|++|+|.|...  .....+|.|++++..+....    ......+..+..+      ++|+|.+++.+|+|.|+|
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~n------gSL~I~nl~~~DsG~Y~c   77 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN------GDLKIKNLTRDDSGTYNV   77 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT------SCEEESSCCGGGCEEEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCC------ccEEEeCCCHHHCEEEEE
Confidence            45667899999999643  22335799999876653211    1111223333333      489999999999999999


Q ss_pred             EEecCCCce--eEEEEEEEE
Q psy1672         337 VAENRAGIA--DANFTLQVT  354 (600)
Q Consensus       337 ~a~N~~G~~--~~~v~L~V~  354 (600)
                      .+.|..|..  ++.+.|+|.
T Consensus        78 ~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          78 TVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             EEEETTCCEEEEEEEEEEEE
T ss_pred             EEEeCCCCEEEEEEEEEEEE
Confidence            999999986  566777763

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.9e-07  Score=73.80  Aligned_cols=84  Identities=20%  Similarity=0.223  Sum_probs=57.5

Q ss_pred             ccccccccccceeeeEeecCCCCeeEEEEcCeeccCCccc-----Cc-cceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAF-----SS-YQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~-----~~-~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      +.+.+..|++|+|.|.+ +.|.+.|.|.+++..+......     +. ..+..+..     ..+.|+|.+++.+|+|.|+
T Consensus         3 ~~v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~sL~I~~l~~~DsG~Y~   76 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDT-----VSGSLTIYNLTSSDEDEYE   76 (93)
T ss_dssp             EEEEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECT-----TTCCEEECSCCGGGCEEEE
T ss_pred             cEEEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcC-----CeeEEEEEecChhhCEEEE
Confidence            34667889999999986 4688899999987654321100     00 01111111     1357999999999999999


Q ss_pred             EEEecCCCceeEEEEEEE
Q psy1672         336 CVAENRAGIADANFTLQV  353 (600)
Q Consensus       336 C~a~N~~G~~~~~v~L~V  353 (600)
                      |.|.|..+..+  +.|+|
T Consensus        77 c~~~n~~~t~~--~~l~V   92 (93)
T d1ccza1          77 MESPNITDTMK--FFLYV   92 (93)
T ss_dssp             EECTTCCSCEE--EEEEE
T ss_pred             EEEECCCcEEE--EEEEE
Confidence            99999877554  55554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.26  E-value=1.1e-07  Score=95.59  Aligned_cols=133  Identities=21%  Similarity=0.257  Sum_probs=63.7

Q ss_pred             ceEEEeeCCCCCCCCh----hhhcccCCCCccEEEeecccCcccCcc-------------ccCCCCCccEEEccCCCCCC
Q psy1672          51 TQVLDMSGNNLQILPK----EAFRRAGLLNLQKLFLARCHIGQIDSG-------------ALDGLTNLIEIDLSDNLLTS  113 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~----~~f~~~~l~~L~~L~L~~n~l~~i~~~-------------~f~~l~~L~~L~Ls~N~l~~  113 (600)
                      ++.|+|++|.+.....    ..+.  .+++|+.|+|++|.+......             .....+.|+.|++++|.++.
T Consensus        95 L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          95 LHTVRLSDNAFGPTAQEPLIDFLS--KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             CCEEECCSCCCCTTTHHHHHHHHH--HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             cccccccccccccccccchhhhhc--ccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            7777777777764211    1122  466777777777765321100             01234455556665555542


Q ss_pred             CCcc----ccCCCCCCCEEEccCCCCCcc-----CcccccCCCCcceeeCCCCcCcccC----hhhhcCCCCCCEEEcCC
Q psy1672         114 IPSL----TFQSVRFLRDLNLARNPISKI-----EKGAFQFVPGLVKLDMSESRLEHIS----PEAFTGAKSLESIKLNG  180 (600)
Q Consensus       114 l~~~----~f~~l~~L~~L~Ls~N~i~~l-----~~~~~~~l~~L~~L~Ls~n~l~~i~----~~~~~~l~~L~~L~Ls~  180 (600)
                      -...    .+.....|+.|+|++|.+..-     ....+..+++|+.|+|++|.+....    ...+..+++|+.|+|++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence            1111    122344555555555555421     1122344455555555555543321    12334455555555555


Q ss_pred             CcCCC
Q psy1672         181 NRLSH  185 (600)
Q Consensus       181 N~l~~  185 (600)
                      |.|..
T Consensus       253 n~i~~  257 (344)
T d2ca6a1         253 CLLSA  257 (344)
T ss_dssp             CCCCH
T ss_pred             CccCc
Confidence            55543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.24  E-value=2.8e-07  Score=92.58  Aligned_cols=158  Identities=17%  Similarity=0.150  Sum_probs=81.6

Q ss_pred             ceEEEeeCCCCCCCChh----h---hc-ccCCCCccEEEeecccCcccCc----cccCCCCCccEEEccCCCCCCCCcc-
Q psy1672          51 TQVLDMSGNNLQILPKE----A---FR-RAGLLNLQKLFLARCHIGQIDS----GALDGLTNLIEIDLSDNLLTSIPSL-  117 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~----~---f~-~~~l~~L~~L~L~~n~l~~i~~----~~f~~l~~L~~L~Ls~N~l~~l~~~-  117 (600)
                      ++.|+++++.+..+...    .   +. ...+++|+.|+|++|.++....    ..+..+++|++|+|++|.+...... 
T Consensus        61 L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~  140 (344)
T d2ca6a1          61 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK  140 (344)
T ss_dssp             CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHH
T ss_pred             CCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccccccccc
Confidence            66677766654432211    0   00 0145667777777776654322    2233456677777776665321000 


Q ss_pred             ------------ccCCCCCCCEEEccCCCCCccCc----ccccCCCCcceeeCCCCcCccc-----ChhhhcCCCCCCEE
Q psy1672         118 ------------TFQSVRFLRDLNLARNPISKIEK----GAFQFVPGLVKLDMSESRLEHI-----SPEAFTGAKSLESI  176 (600)
Q Consensus       118 ------------~f~~l~~L~~L~Ls~N~i~~l~~----~~~~~l~~L~~L~Ls~n~l~~i-----~~~~~~~l~~L~~L  176 (600)
                                  .....+.|+.|.+++|.+.....    ..+.....|+.|+|++|.|...     ....+..+++|+.|
T Consensus       141 l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L  220 (344)
T d2ca6a1         141 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL  220 (344)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEE
T ss_pred             ccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccc
Confidence                        01234556677777666553221    1233455677777777766532     12334456667777


Q ss_pred             EcCCCcCCCCC----cccccccccccEEEccCCcCc
Q psy1672         177 KLNGNRLSHFP----VRSVEPLLKLMMIELHDNPWV  208 (600)
Q Consensus       177 ~Ls~N~l~~l~----~~~~~~l~~L~~L~l~~N~~~  208 (600)
                      +|++|.+....    ...+..+++|+.|++++|.+.
T Consensus       221 ~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         221 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             ccccccccccccccccccccccccchhhhhhcCccC
Confidence            77777654321    123345566667777666543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4.2e-08  Score=87.88  Aligned_cols=67  Identities=21%  Similarity=0.186  Sum_probs=34.4

Q ss_pred             cCCCCCccEEEccCCCCCCCCc--cccCCCCCCCEEEccCCCCCccCcccccCCCCcceeeCCCCcCcc
Q psy1672          95 LDGLTNLIEIDLSDNLLTSIPS--LTFQSVRFLRDLNLARNPISKIEKGAFQFVPGLVKLDMSESRLEH  161 (600)
Q Consensus        95 f~~l~~L~~L~Ls~N~l~~l~~--~~f~~l~~L~~L~Ls~N~i~~l~~~~~~~l~~L~~L~Ls~n~l~~  161 (600)
                      +..+++|++|+|++|+|+.+..  ..+..+++|+.|+|++|.|+.+....+....+|+.|++++|.+..
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            3445566666666666655542  223445555555555555555544333333445555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.2e-07  Score=84.83  Aligned_cols=103  Identities=20%  Similarity=0.247  Sum_probs=67.8

Q ss_pred             CCCccEEEccCCCCCCCCccccCCCCCCCEEEccCCCCCccCc--ccccCCCCcceeeCCCCcCcccChhhhcCCCCCCE
Q psy1672          98 LTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLNLARNPISKIEK--GAFQFVPGLVKLDMSESRLEHISPEAFTGAKSLES  175 (600)
Q Consensus        98 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~Ls~N~i~~l~~--~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~  175 (600)
                      +..+..+++.++.+..+ ...+..++.|++|+|++|+|+.+.+  ..+..+++|+.|+|++|.|+.+..-.+.....|+.
T Consensus        41 ~~~~~~l~~~~~~~~~l-~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~  119 (162)
T d1koha1          41 QNIDVVLNRRSSMAATL-RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE  119 (162)
T ss_dssp             TTCCCCTTSHHHHHHHH-HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSS
T ss_pred             ccchhhcchhhhHhhhh-HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccce
Confidence            33333444444433332 2244567788888888888887753  44567888888888888888886544445567888


Q ss_pred             EEcCCCcCCCCCc-------ccccccccccEEE
Q psy1672         176 IKLNGNRLSHFPV-------RSVEPLLKLMMIE  201 (600)
Q Consensus       176 L~Ls~N~l~~l~~-------~~~~~l~~L~~L~  201 (600)
                      |++++|.+.....       ..+..+++|+.||
T Consensus       120 L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         120 LWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             eecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            8888888876532       2345677888776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=6.4e-07  Score=87.55  Aligned_cols=157  Identities=18%  Similarity=0.164  Sum_probs=104.0

Q ss_pred             ceEEEeeCCCCCCCChhhhcccCCCCccEEEeecccCccc-CccccCCCCCccEEEccCCCCCCCCccccCCCCCCCEEE
Q psy1672          51 TQVLDMSGNNLQILPKEAFRRAGLLNLQKLFLARCHIGQI-DSGALDGLTNLIEIDLSDNLLTSIPSLTFQSVRFLRDLN  129 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~~~~f~~~~l~~L~~L~L~~n~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  129 (600)
                      +..+.+....+.......+   ...+|++|+|++|.+..- ....+..+++|++|+|+++.++......+..+++|+.|+
T Consensus        25 ~~~lrl~~~~~~~~~~~~~---~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  101 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHF---SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  101 (284)
T ss_dssp             CSEEECTTCEECSCCCSCC---CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ceEeeccccccccchhhhc---cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcc
Confidence            4455555554443333333   467999999999987543 234478899999999999988754445677789999999


Q ss_pred             ccCC-CCCccCc-ccccCCCCcceeeCCCC-cCcccC-hhhh-cCCCCCCEEEcCCCc--CCCCCc-ccccccccccEEE
Q psy1672         130 LARN-PISKIEK-GAFQFVPGLVKLDMSES-RLEHIS-PEAF-TGAKSLESIKLNGNR--LSHFPV-RSVEPLLKLMMIE  201 (600)
Q Consensus       130 Ls~N-~i~~l~~-~~~~~l~~L~~L~Ls~n-~l~~i~-~~~~-~~l~~L~~L~Ls~N~--l~~l~~-~~~~~l~~L~~L~  201 (600)
                      |+++ .++...- ..+..+++|++|+++++ .++... ...+ ...++|+.|+++++.  ++.... ..+..+++|+.|+
T Consensus       102 Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~  181 (284)
T d2astb2         102 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  181 (284)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             ccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccc
Confidence            9985 4553211 22456899999999986 454321 1122 235789999998753  333211 2235578999999


Q ss_pred             ccCCcCccc
Q psy1672         202 LHDNPWVCD  210 (600)
Q Consensus       202 l~~N~~~C~  210 (600)
                      +.+++..-+
T Consensus       182 L~~~~~itd  190 (284)
T d2astb2         182 LSDSVMLKN  190 (284)
T ss_dssp             CTTCTTCCG
T ss_pred             cccccCCCc
Confidence            998764433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.3e-06  Score=90.12  Aligned_cols=110  Identities=23%  Similarity=0.256  Sum_probs=81.2

Q ss_pred             ceEEEeeCCCCCCCC-hhhhcccCCCCccEEEeecccCcccC----ccccCCCCCccEEEccCCCCCCCCc----cccC-
Q psy1672          51 TQVLDMSGNNLQILP-KEAFRRAGLLNLQKLFLARCHIGQID----SGALDGLTNLIEIDLSDNLLTSIPS----LTFQ-  120 (600)
Q Consensus        51 l~~L~Ls~n~L~~l~-~~~f~~~~l~~L~~L~L~~n~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~l~~----~~f~-  120 (600)
                      ++.||++.|+++... ...+.  .+++|++|+|++|+++...    ..++..+++|++|||++|.|+....    ..+. 
T Consensus         4 l~~ld~~~~~i~~~~~~~l~~--~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           4 IQSLDIQCEELSDARWAELLP--LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEESCCCCHHHHHHHHH--HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCEEEeeCCcCChHHHHHHHH--hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            899999999998643 23333  6889999999999887432    3456788999999999998863211    1122 


Q ss_pred             CCCCCCEEEccCCCCCccC----cccccCCCCcceeeCCCCcCccc
Q psy1672         121 SVRFLRDLNLARNPISKIE----KGAFQFVPGLVKLDMSESRLEHI  162 (600)
Q Consensus       121 ~l~~L~~L~Ls~N~i~~l~----~~~~~~l~~L~~L~Ls~n~l~~i  162 (600)
                      ...+|+.|+|++|.++...    ...+..+++|++|+|++|.+...
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhh
Confidence            2357999999999987543    23466788999999999988654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.1e-06  Score=88.44  Aligned_cols=112  Identities=20%  Similarity=0.205  Sum_probs=81.9

Q ss_pred             CCccEEEeecccCcccC-ccccCCCCCccEEEccCCCCCCCC----ccccCCCCCCCEEEccCCCCCccCc----ccc-c
Q psy1672          75 LNLQKLFLARCHIGQID-SGALDGLTNLIEIDLSDNLLTSIP----SLTFQSVRFLRDLNLARNPISKIEK----GAF-Q  144 (600)
Q Consensus        75 ~~L~~L~L~~n~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~l~----~~~f~~l~~L~~L~Ls~N~i~~l~~----~~~-~  144 (600)
                      .+|+.|+++.|+++... ...+..+++|+.|+|++|.|+...    ...+..+++|++|+|++|.|+....    ..+ .
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36899999999997653 233566789999999999887422    1235678899999999998863211    112 2


Q ss_pred             CCCCcceeeCCCCcCcccC----hhhhcCCCCCCEEEcCCCcCCCC
Q psy1672         145 FVPGLVKLDMSESRLEHIS----PEAFTGAKSLESIKLNGNRLSHF  186 (600)
Q Consensus       145 ~l~~L~~L~Ls~n~l~~i~----~~~~~~l~~L~~L~Ls~N~l~~l  186 (600)
                      ...+|+.|+|++|+++...    ...+..+++|+.|+|++|.+...
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~  127 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  127 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhh
Confidence            3357999999999987653    34567789999999999987643

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=9.9e-06  Score=66.50  Aligned_cols=83  Identities=16%  Similarity=0.262  Sum_probs=54.1

Q ss_pred             cccccccceeeeEeecCCCCeeEEEEcCeeccCC----------ccc--C-ccceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPAAISWYWNGRLLLNN----------TAF--S-SYQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~----------~~~--~-~~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      .+.+|++|.|.|.........+.|++........          ...  + -.+|..+..++      +|.|.+++.+|+
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng------SL~I~~v~~~D~   83 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG------SLLFQMITMKDM   83 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS------CEEECSCCGGGC
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc------cEEEcCCCchhC
Confidence            3568999999997543345689999843321100          000  0 12345554444      899999999999


Q ss_pred             eEEEEEEecCCC-ceeEEEEEEE
Q psy1672         332 GRFYCVAENRAG-IADANFTLQV  353 (600)
Q Consensus       332 G~Y~C~a~N~~G-~~~~~v~L~V  353 (600)
                      |.|+|.+.+..+ ..++.+.|.|
T Consensus        84 G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          84 GVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEEEEETTEEECCCCEEECC
T ss_pred             EEEEEEEEECCCCEEEEEEEEEE
Confidence            999999988764 4455555544

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.3e-05  Score=64.46  Aligned_cols=86  Identities=16%  Similarity=0.226  Sum_probs=52.8

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCe--eccCCc------ccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEE
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGR--LLLNNT------AFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFY  335 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~--~l~~~~------~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~  335 (600)
                      +...+|++|+|.|.........+.|++...  .+....      ......++....+.......+|.|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            456789999999998776677899998432  111100      000112222221111112357999999999999999


Q ss_pred             EEEecCCCceeEEEEEEE
Q psy1672         336 CVAENRAGIADANFTLQV  353 (600)
Q Consensus       336 C~a~N~~G~~~~~v~L~V  353 (600)
                      |.+.+.    +..+.|.|
T Consensus        84 C~v~~~----~~~v~L~V   97 (97)
T d2nxyb1          84 CEVEDQ----KEEVQLLV   97 (97)
T ss_dssp             EEETTE----EEEEEEEE
T ss_pred             EEEecC----CeEEEEEC
Confidence            999764    44555543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.69  E-value=5.6e-05  Score=62.53  Aligned_cols=86  Identities=24%  Similarity=0.382  Sum_probs=56.1

Q ss_pred             cccccccccccccccceeeeEeecCCCCeeEEEEc--Ceecc------CCcccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLL------NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~------~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      +...|..+.+.+|+.++|.|.........+.|++.  ++...      .........+.....+. ......|+|.+++.
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~sL~i~~~~~   81 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDA-DTKQSSLHITASQL   81 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCS-SSSEEEEEECSCCG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecC-cccccccEEcccCh
Confidence            34456788899999999999988766778999982  22111      00111111222222111 12456899999999


Q ss_pred             CCCeEEEEEEecCCC
Q psy1672         329 SDSGRFYCVAENRAG  343 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G  343 (600)
                      +|+|.|.|.+....+
T Consensus        82 ~Dsg~Y~Ca~~~~~~   96 (114)
T d2cdea1          82 SDSASYICVVSDRGS   96 (114)
T ss_dssp             GGCSEEEEEEECSCT
T ss_pred             hhCcccceeeecCCC
Confidence            999999999987544

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.61  E-value=7.2e-05  Score=62.02  Aligned_cols=95  Identities=22%  Similarity=0.330  Sum_probs=54.9

Q ss_pred             cccccccccccccceeeeEeecC----CCCeeEEEEcC--ee----cc---CCc----ccCc-cceEEEeeCCceeeeee
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSI----PPAAISWYWNG--RL----LL---NNT----AFSS-YQRIFVIEQGEYERKSS  320 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~----P~p~i~W~~~g--~~----l~---~~~----~~~~-~~~~~~~~~g~~~~~s~  320 (600)
                      ..+..+.+..|++++|.|.....    ....+.|++..  ..    +.   ...    ..+. .+|+.+..+ ......+
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~s   82 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGD-PSWKDGS   82 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCB-GGGTBCC
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEE-CCCCEEE
Confidence            34567888999999999987522    23478998721  10    00   000    0000 122332211 1112357


Q ss_pred             EEEecCCCCCCeEEEEEEecCCCc--eeEEEEEEEE
Q psy1672         321 LVLTNAQESDSGRFYCVAENRAGI--ADANFTLQVT  354 (600)
Q Consensus       321 L~I~~v~~~d~G~Y~C~a~N~~G~--~~~~v~L~V~  354 (600)
                      |.|.+++..|+|.|.|.+.+..+.  ....+.|.|.
T Consensus        83 L~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            999999999999999999986543  3445666663

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=6.8e-05  Score=62.83  Aligned_cols=83  Identities=19%  Similarity=0.392  Sum_probs=54.2

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEE--cCeeccC-------Cc---------ccCccceEEEeeCCcee
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLN-------NT---------AFSSYQRIFVIEQGEYE  316 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~~-------~~---------~~~~~~~~~~~~~g~~~  316 (600)
                      |++...|..+.+.+|++++|.|.+.+.....+.|++  .|+.+..       ..         .+....+.......  .
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~--~   79 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDT--N   79 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEET--T
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCC--C
Confidence            566777888899999999999999877777899998  2332110       00         00000111111000  0


Q ss_pred             eeeeEEEecCCCCCCeEEEEEEe
Q psy1672         317 RKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       317 ~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      ....|+|.+++.+|+|.|.|.+.
T Consensus        80 ~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          80 NKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CEeEEEEcccccCCCEEEEeeEe
Confidence            12479999999999999999875

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.45  E-value=0.00016  Score=59.84  Aligned_cols=85  Identities=16%  Similarity=0.156  Sum_probs=53.9

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEEc--Ceecc----CC--cccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLL----NN--TAFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~----~~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ...+..+.+.+|+.++|.|.........+.|++.  |+.+.    ..  .......+..+..+ .......|.|.+++.+
T Consensus         5 ~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           5 TQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLH-KSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCB-GGGTBCCEEESSCCGG
T ss_pred             EcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeecc-CCCCeEEeeccccccc
Confidence            4456778889999999999988666678999983  32111    00  00011112222111 1123457999999999


Q ss_pred             CCeEEEEEEecCCC
Q psy1672         330 DSGRFYCVAENRAG  343 (600)
Q Consensus       330 d~G~Y~C~a~N~~G  343 (600)
                      |+|.|.|.+....+
T Consensus        84 Dsg~YyCa~~~~~~   97 (115)
T d1lp9e1          84 DSALYYCALFLASS   97 (115)
T ss_dssp             GCEEEEEEEEECSS
T ss_pred             cCccceEEEEcCCC
Confidence            99999998876544

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=6.9e-05  Score=62.01  Aligned_cols=96  Identities=15%  Similarity=0.179  Sum_probs=57.6

Q ss_pred             cccccccccccccceeeeEeecCC---CCeeEEEEcC--ee---c-c-C-CcccCccceEEEeeCCceeeeeeEEEecCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIP---PAAISWYWNG--RL---L-L-N-NTAFSSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P---~p~i~W~~~g--~~---l-~-~-~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      ..|..+.+.+|+.++|.|......   ...+.|++..  ..   + . . ........+..+..+. ......|+|.+++
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~sL~I~~l~   82 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFP-ENGTFVVNIAQLS   82 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEET-TTTEEEEEECSCC
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeC-CCCEEEEEEhhhC
Confidence            346678889999999999865321   2357798732  11   1 0 0 0111112233332221 1234589999999


Q ss_pred             CCCCeEEEEEEecCCCceeEEEEEEEEE
Q psy1672         328 ESDSGRFYCVAENRAGIADANFTLQVTY  355 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~~G~~~~~v~L~V~~  355 (600)
                      .+|+|.|.|.+..........+.|.|..
T Consensus        83 ~~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          83 QDDSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             GGGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             cCCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            9999999999875554445566777643

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.41  E-value=0.00019  Score=58.42  Aligned_cols=80  Identities=19%  Similarity=0.306  Sum_probs=51.6

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEEc--Ceecc----CCc--ccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLL----NNT--AFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~----~~~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ...+..+.+.+|+.|+|.|.........+.|++.  |..+.    ...  ......+.....++   ....|+|.+++.+
T Consensus         4 tQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~L~I~~~~~~   80 (106)
T d1a0ql1           4 TQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSG---RDYSFSISNLEPE   80 (106)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET---TEEEEEECSCCGG
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCC---CEeeeEehhhccc
Confidence            3446778889999999999887665567999983  22111    000  00011122222222   3457999999999


Q ss_pred             CCeEEEEEEec
Q psy1672         330 DSGRFYCVAEN  340 (600)
Q Consensus       330 d~G~Y~C~a~N  340 (600)
                      |+|.|.|.+..
T Consensus        81 DsA~YyCa~~~   91 (106)
T d1a0ql1          81 DIATYYCLQYY   91 (106)
T ss_dssp             GCSEEEEEECS
T ss_pred             CCEeEEEEEeC
Confidence            99999998764

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00023  Score=58.11  Aligned_cols=74  Identities=16%  Similarity=0.173  Sum_probs=47.1

Q ss_pred             cccccccceeeeEee-cCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe-EEEEEEec
Q psy1672         265 EAVSSENATVVCRVD-SIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG-RFYCVAEN  340 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~-g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G-~Y~C~a~N  340 (600)
                      .+..|+.++|.|.+. +.|.+  .|.|+++++.+........     ....+.....+.|.+. ++..|.| .|+|.|+|
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~-----~~~~~~~~~~s~l~~~-~~~~D~g~~ltC~a~~   85 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLED-----ADRKSLETKSLEVTFT-PVIEDIGKVLVCRAKL   85 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSC-----CSSCCCEEEEEEEEEC-CCGGGTTCEEEEEEEE
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccc-----cccCCcceeeEEEEcc-CChHHCCcEEEEEEEc
Confidence            356899999999998 56754  6889998877653221000     0011223334566665 4445556 79999999


Q ss_pred             CCCc
Q psy1672         341 RAGI  344 (600)
Q Consensus       341 ~~G~  344 (600)
                      .++.
T Consensus        86 ~~~~   89 (109)
T d1vcaa1          86 HIDE   89 (109)
T ss_dssp             CSCC
T ss_pred             CcCC
Confidence            8755

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=0.00022  Score=58.80  Aligned_cols=83  Identities=16%  Similarity=0.272  Sum_probs=52.2

Q ss_pred             cccccccccccccceeeeEeecC-CCCeeEEEE--cCeecc------CC-cccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSI-PPAAISWYW--NGRLLL------NN-TAFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~--~g~~l~------~~-~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..|..+.+.+|+.|+|.|...+. ....+.|++  .++.+.      .. .......+..+..+.. .....|.|.+++.
T Consensus         4 qsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~-~~~~~L~I~~~~~   82 (114)
T d3bp5a1           4 FYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPN-RHDFHMNILDTRR   82 (114)
T ss_dssp             EESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTT-SSEEEEEESSCCG
T ss_pred             ECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCC-CCEEEEEECccCc
Confidence            45677889999999999998643 345689998  232111      00 0001112233322211 1345799999999


Q ss_pred             CCCeEEEEEEecCC
Q psy1672         329 SDSGRFYCVAENRA  342 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~  342 (600)
                      +|+|.|.|.+....
T Consensus        83 ~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          83 NDSGIYLCGAISLH   96 (114)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             CCCeEEEEEEEeCC
Confidence            99999999887554

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.34  E-value=0.00014  Score=59.82  Aligned_cols=85  Identities=16%  Similarity=0.285  Sum_probs=54.1

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEE--cCeecc------CCcccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLL------NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~------~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ...+..+.+..|+.++|.|...+.....+.|++  .|+.+.      .........+....... ......|.|.+++.+
T Consensus         4 ~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           4 TQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDK-SSGRSTLYIAASQPG   82 (113)
T ss_dssp             ECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEET-TTTEEEEEESSCCGG
T ss_pred             EeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeecc-CCCEEEeeeecCCCC
Confidence            445677888999999999998876667899998  232111      00000111111111111 123468999999999


Q ss_pred             CCeEEEEEEecCCC
Q psy1672         330 DSGRFYCVAENRAG  343 (600)
Q Consensus       330 d~G~Y~C~a~N~~G  343 (600)
                      |+|.|.|.+....+
T Consensus        83 Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          83 DSATYLCAVRPTSG   96 (113)
T ss_dssp             GCEEEEEEEEESSS
T ss_pred             CCcEEeEeEecCCC
Confidence            99999999876544

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.34  E-value=0.00021  Score=58.08  Aligned_cols=80  Identities=16%  Similarity=0.284  Sum_probs=51.9

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEE--cCeeccC------CcccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLN------NTAFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~~------~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..|..+.+..|++++|.|.........+.|++  .|+...-      ........++.....+   ....|+|.+++.+|
T Consensus         6 QsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~---~~~~L~I~~~~~~D   82 (106)
T d1i8ka_           6 QSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTG---TDFVFTIENTLSED   82 (106)
T ss_dssp             EECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET---TEEEEEESSCCGGG
T ss_pred             eeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCC---CeeeecccCCcccc
Confidence            44677888999999999988766566799997  3332110      0001111222222222   24579999999999


Q ss_pred             CeEEEEEEecC
Q psy1672         331 SGRFYCVAENR  341 (600)
Q Consensus       331 ~G~Y~C~a~N~  341 (600)
                      +|.|.|.+.+.
T Consensus        83 sa~YyCa~~~~   93 (106)
T d1i8ka_          83 VGDYYCLQSFN   93 (106)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEeEecCcc
Confidence            99999986643

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.29  E-value=0.0003  Score=57.81  Aligned_cols=81  Identities=20%  Similarity=0.241  Sum_probs=51.2

Q ss_pred             ccccccccccccccceeeeEeecC--CCCeeEEEE--cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSI--PPAAISWYW--NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~--P~p~i~W~~--~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      ...|..+.+.+|+.++|.|...+.  ....+.|++  .+.....  ......+.....+. ......|+|.+++.+|+|.
T Consensus         4 ~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~--~~~~~~~~~~~~~~-~~~~~~L~I~~l~~~Dsa~   80 (113)
T d1vesa_           4 DQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQ--SISIGGRYVETVNK-GSKSFSLRISDLRVEDSGT   80 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCE--ECCCBTTEEEEEET-TTTEEEEEECSCCGGGCEE
T ss_pred             EeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeecccccee--eeeecccccceeEC-CCCceeeeecccccCCcce
Confidence            344677888999999999988743  345689998  3322111  01111222221111 1134579999999999999


Q ss_pred             EEEEEecC
Q psy1672         334 FYCVAENR  341 (600)
Q Consensus       334 Y~C~a~N~  341 (600)
                      |.|.+...
T Consensus        81 YyCa~~~~   88 (113)
T d1vesa_          81 YKCQAFYS   88 (113)
T ss_dssp             EEEEEEEE
T ss_pred             Eeeeeecc
Confidence            99998643

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.20  E-value=0.00035  Score=56.82  Aligned_cols=79  Identities=16%  Similarity=0.294  Sum_probs=51.3

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEE--cCeecc----CC--cccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLL----NN--TAFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~----~~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..|..+.+..|+.++|.|.........+.|++  .|+.+.    ..  .......+......+   ....|.|.+++.+|
T Consensus         6 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~l~~~D   82 (107)
T d1c5cl1           6 QSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSG---SDYSLTISSLESED   82 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEET---TEEEEEESSCCGGG
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccC---CEEEEEEhhhcccC
Confidence            44667888899999999998766666799998  333211    00  000111122222111   24589999999999


Q ss_pred             CeEEEEEEec
Q psy1672         331 SGRFYCVAEN  340 (600)
Q Consensus       331 ~G~Y~C~a~N  340 (600)
                      +|.|.|.+.+
T Consensus        83 sa~YyCa~~~   92 (107)
T d1c5cl1          83 FADYYCLQYA   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CeEEEEecCc
Confidence            9999998664

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.20  E-value=0.00039  Score=56.54  Aligned_cols=80  Identities=14%  Similarity=0.270  Sum_probs=51.8

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEE--cCeecc----CCc--ccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLL----NNT--AFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~----~~~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..+..+.+..|++++|.|.........+.|++  .|+.+.    ...  ......+.....++   ....|+|.+++.+|
T Consensus         6 Q~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~---~~~~L~I~~~~~~D   82 (107)
T d1j1pl_           6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG---TDFTLSINSVETED   82 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET---TEEEEEESSCCGGG
T ss_pred             CcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccC---CEEEEEEcccCcCC
Confidence            44677889999999999988765566799998  333211    000  00011222222222   34689999999999


Q ss_pred             CeEEEEEEecC
Q psy1672         331 SGRFYCVAENR  341 (600)
Q Consensus       331 ~G~Y~C~a~N~  341 (600)
                      +|.|.|.+.+.
T Consensus        83 sa~YyCa~~~~   93 (107)
T d1j1pl_          83 FGMYFCQQANS   93 (107)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEEEcCCC
Confidence            99999976543

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.19  E-value=0.0003  Score=58.01  Aligned_cols=84  Identities=15%  Similarity=0.203  Sum_probs=52.4

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEE--cCeecc----CCc---ccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLL----NNT---AFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~----~~~---~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ...+..+.+.+|+.++|.|.........+.|++  .|+.+.    ...   ......+....... ......|+|.+++.
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKK-SETSFHLTKPSAHM   82 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBG-GGTBCCEEESSCCG
T ss_pred             EcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECC-CCCEEEEeeccccc
Confidence            344677889999999999998766566799998  333211    000   00000111111111 11234799999999


Q ss_pred             CCCeEEEEEEecCC
Q psy1672         329 SDSGRFYCVAENRA  342 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~  342 (600)
                      +|+|.|.|.+....
T Consensus        83 ~Dsa~YyCa~~~~~   96 (115)
T d1j8hd1          83 SDAAEYFCAVSESP   96 (115)
T ss_dssp             GGCEEEEEEEESST
T ss_pred             cCCccceeeecCCC
Confidence            99999999997653

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.17  E-value=0.00042  Score=56.34  Aligned_cols=79  Identities=18%  Similarity=0.288  Sum_probs=51.6

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEE--cCeecc---C-Cc--ccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLL---N-NT--AFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~---~-~~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..+..+.+.+|+.|+|.|...+.....+.|++  .|+.+.   . ..  ......+.....++   ....|+|.+++.+|
T Consensus         6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~---~~~~L~I~~~~~~D   82 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSG---KDYTLSITSLQTED   82 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSS---SSEEEEESSCCGGG
T ss_pred             eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCC---CeEEeEEccccccc
Confidence            44677889999999999988765556799998  332111   0 00  00111222222222   24689999999999


Q ss_pred             CeEEEEEEec
Q psy1672         331 SGRFYCVAEN  340 (600)
Q Consensus       331 ~G~Y~C~a~N  340 (600)
                      +|.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (107)
T d1ospl1          83 VATYFCQQYW   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CCcEEEeecc
Confidence            9999998764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.14  E-value=0.00028  Score=58.18  Aligned_cols=83  Identities=13%  Similarity=0.115  Sum_probs=50.7

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEE--cCeeccCCc-ccCccce------EEEeeCCceeeeeeEEEecCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLNNT-AFSSYQR------IFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~~~~-~~~~~~~------~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ...+..+.+..|+.++|.|.........+.|++  .++....-. .......      ....... ......|.|.+++.
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~   82 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSK-SNSSFHLRKASVHW   82 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBT-TTTBCCEEESSCCG
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeC-cCCEEEEecccccc
Confidence            344567889999999999998765567789998  332110000 0000000      0111000 01345799999999


Q ss_pred             CCCeEEEEEEecC
Q psy1672         329 SDSGRFYCVAENR  341 (600)
Q Consensus       329 ~d~G~Y~C~a~N~  341 (600)
                      +|+|.|.|.+...
T Consensus        83 ~Dsg~YyCa~~~~   95 (115)
T d1i9ea_          83 SDSAVYFCAVSGF   95 (115)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             cccceecccccCC
Confidence            9999999987643

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.12  E-value=0.00044  Score=55.77  Aligned_cols=78  Identities=22%  Similarity=0.428  Sum_probs=49.3

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEE--cCeecc------CCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLL------NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~------~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      +..+.+.+|+.|+|.|.........+.|++  .|+.+.      .........+.....+.   ....|.|.+++.+|+|
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~l~~~Dsa   81 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSG---TTVTLTISGVQAEDEA   81 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET---TEEEEEETTCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCC---CccCceEcCcchhHCc
Confidence            346788899999999988765556799998  332211      00000011112221111   2468999999999999


Q ss_pred             EEEEEEecC
Q psy1672         333 RFYCVAENR  341 (600)
Q Consensus       333 ~Y~C~a~N~  341 (600)
                      .|.|.+...
T Consensus        82 ~YyCA~~~~   90 (103)
T d8faba1          82 DYYCQAWDN   90 (103)
T ss_dssp             EEEEEEEET
T ss_pred             eEEeeecCC
Confidence            999987643

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.12  E-value=0.00054  Score=55.60  Aligned_cols=79  Identities=16%  Similarity=0.305  Sum_probs=51.5

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEEc--Ceecc----CCc--ccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLL----NNT--AFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~----~~~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..|..+.+..|++|+|.|.........+.|++.  ++...    ...  ......+.....+.   ....|+|.+++.+|
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~l~~~D   82 (107)
T d1kcvl1           6 QSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSA---TDFTLTISSVQADD   82 (107)
T ss_dssp             ESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET---TEEEEEESSCCGGG
T ss_pred             CcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccC---CeeecEEHhheecC
Confidence            456778899999999999987666667999983  22111    000  00011122222211   34679999999999


Q ss_pred             CeEEEEEEec
Q psy1672         331 SGRFYCVAEN  340 (600)
Q Consensus       331 ~G~Y~C~a~N  340 (600)
                      +|.|.|.+..
T Consensus        83 Sa~YyCa~~~   92 (107)
T d1kcvl1          83 DADYYCGQSY   92 (107)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEEecC
Confidence            9999998754

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0013  Score=52.06  Aligned_cols=73  Identities=19%  Similarity=0.268  Sum_probs=49.6

Q ss_pred             cccccceeeeEeec-CCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCce
Q psy1672         267 VSSENATVVCRVDS-IPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA  345 (600)
Q Consensus       267 ~~G~~v~L~C~v~g-~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~  345 (600)
                      ..++.++|.|.+.| .|.+.|.|.++++.+.....    ....-..+|.+...+.|.+..   .+...|+|.+++..-..
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~----~~~~~~~~g~y~v~S~L~v~~---~~~~~~tC~V~h~~l~~   86 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINT----TVSQDPETELYAVSSKLDFNM---TTNHSFMCLIKYGHLRV   86 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEE----EEEECTTTCCEEEEEEEEEET---TSCEEEEEEEEETTCCE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccce----eeEecCCCccEEEEEEEEccC---CccceEEEEEEecCCCC
Confidence            35677899999996 69899999999887754321    011111235566677787753   34568999999876544


Q ss_pred             e
Q psy1672         346 D  346 (600)
Q Consensus       346 ~  346 (600)
                      .
T Consensus        87 ~   87 (95)
T d1dr9a2          87 N   87 (95)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.10  E-value=0.00033  Score=57.19  Aligned_cols=81  Identities=20%  Similarity=0.323  Sum_probs=50.4

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEEc--Ceecc------CCcccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLL------NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~------~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..+..+.+.+|+.++|.|.........+.|++.  |+...      .........+.....+. ......|.|.+++.+|
T Consensus         4 Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~D   82 (110)
T d1u3ha1           4 QSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNK-REKKLSLHIADSQPGD   82 (110)
T ss_dssp             CSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEET-GGGEEEEEESSCCTTS
T ss_pred             ecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECC-CCCeeEeEeccCCCCC
Confidence            345677888999999999987655567999983  32211      00000011111111111 1234689999999999


Q ss_pred             CeEEEEEEec
Q psy1672         331 SGRFYCVAEN  340 (600)
Q Consensus       331 ~G~Y~C~a~N  340 (600)
                      +|.|.|.+.-
T Consensus        83 sa~YyCa~~~   92 (110)
T d1u3ha1          83 SATYFCAASA   92 (110)
T ss_dssp             CSEEEECCEE
T ss_pred             ceeEeeeecC
Confidence            9999998763

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00073  Score=54.80  Aligned_cols=82  Identities=16%  Similarity=0.301  Sum_probs=49.6

Q ss_pred             cccccccccccceeeeEeecCC--CCeeEEEEc--Cee---c-c--CCcccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         261 SRYVEAVSSENATVVCRVDSIP--PAAISWYWN--GRL---L-L--NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P--~p~i~W~~~--g~~---l-~--~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ++.+.+.+|+.++|.|......  ...+.|++.  +..   + .  .........+..+..+. ......|.|.+++.+|
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-~~~~~~L~I~~l~~~D   81 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDP-DAGFFTVTMTDLREED   81 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEET-TTTEEEEEECSCCGGG
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeC-CCCEEEEEEhhhCCCC
Confidence            3457788999999999875332  345789882  221   1 0  01111112333332221 1234689999999999


Q ss_pred             CeEEEEEEecCCC
Q psy1672         331 SGRFYCVAENRAG  343 (600)
Q Consensus       331 ~G~Y~C~a~N~~G  343 (600)
                      +|.|.|.+.....
T Consensus        82 sG~Y~C~v~~~~~   94 (108)
T d1hkfa_          82 SGHYWCRIYRPSD   94 (108)
T ss_dssp             CEEEEEEEECTTT
T ss_pred             CEEEEEEEecCCC
Confidence            9999998875443

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00045  Score=55.74  Aligned_cols=80  Identities=21%  Similarity=0.249  Sum_probs=49.4

Q ss_pred             cccccccccceeeeEeecCCC----CeeEEEEcCeeccCCcc-----c-CccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         263 YVEAVSSENATVVCRVDSIPP----AAISWYWNGRLLLNNTA-----F-SSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~----p~i~W~~~g~~l~~~~~-----~-~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      ++++..|+.++|.|.......    -.+.|.+++..+.....     . ....+..+...+    ..+|.|.+++.+|+|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g----~~sL~I~~v~~~D~G   78 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN----NLSIVILALRPSDEG   78 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTT----TTEEEECSCCGGGCE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCC----cEEEEECcCChHHCe
Confidence            456788999999998763221    24566665544311100     0 001233333333    347999999999999


Q ss_pred             EEEEEEecCCCcee
Q psy1672         333 RFYCVAENRAGIAD  346 (600)
Q Consensus       333 ~Y~C~a~N~~G~~~  346 (600)
                      .|.|.+.+..+...
T Consensus        79 ~Y~C~V~~~~~~~~   92 (105)
T d1dr9a1          79 TYECVVLKYEKDAF   92 (105)
T ss_dssp             EEEEEEEECCTTSC
T ss_pred             EEEEEEEeCCCCCe
Confidence            99999987655443

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00031  Score=56.25  Aligned_cols=80  Identities=13%  Similarity=0.064  Sum_probs=50.5

Q ss_pred             cccccccccccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         255 PEIRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       255 p~i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      |.+...+. ..+..|++|+|.|++. .+...+.|+++|.......     .+   ...........+.|.+++..|.|.|
T Consensus         8 PsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~-----~~---~~~~~~~~~a~F~l~~vt~~~~G~Y   77 (99)
T d1ucta1           8 PFISAKSS-PVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREI-----GR---RLKFWNETDPEFVIDHMDANKAGRY   77 (99)
T ss_dssp             CCEEESSC-SEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEEC-----SE---ECC----CCCEEEECSCCGGGCEEE
T ss_pred             CEEEecCC-CceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceec-----cc---cccCCCCceEEEEecCCCHHHCceE
Confidence            44444444 3577899999999875 4556888998664211100     00   0000011234688999999999999


Q ss_pred             EEEEecCCCc
Q psy1672         335 YCVAENRAGI  344 (600)
Q Consensus       335 ~C~a~N~~G~  344 (600)
                      +|...+....
T Consensus        78 ~C~y~~~~~~   87 (99)
T d1ucta1          78 QCQYRIGHYR   87 (99)
T ss_dssp             EEEEEETTTE
T ss_pred             EEEEECCCcc
Confidence            9999987653

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00055  Score=54.28  Aligned_cols=80  Identities=14%  Similarity=0.229  Sum_probs=51.7

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      ..+..|++|+|.|+.. .....+.|+++|........          ..........+.|.+++..|.|.|+|...+..+
T Consensus        13 ~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~----------~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1          13 FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP----------KPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             SEEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC----------SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CcccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE----------ccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            3467899999999875 34567888887753221110          000011234789999999999999999887654


Q ss_pred             c--eeEEEEEEEE
Q psy1672         344 I--ADANFTLQVT  354 (600)
Q Consensus       344 ~--~~~~v~L~V~  354 (600)
                      .  .+..+.|.|+
T Consensus        82 ~S~~Sd~leL~VT   94 (95)
T d1olla1          82 WSEPSNLLDLVVT   94 (95)
T ss_dssp             ECCCCCCEEEEEE
T ss_pred             ccCCCCCEEEEEe
Confidence            2  2344555553

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.08  E-value=0.0005  Score=55.87  Aligned_cols=81  Identities=17%  Similarity=0.332  Sum_probs=51.9

Q ss_pred             cccccccccccccccceeeeEeecCCCCeeEEEEc--Ceecc----CC--cccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLL----NN--TAFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~----~~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      +...|..+.+..|+.|+|.|.........+.|++.  |+.+.    ..  .......+.....++   ....|+|.+++.
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~l~~   80 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSG---TEFTLTISTLRP   80 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET---TEEEEEESSCCG
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccC---CEEEEEecccee
Confidence            34457778889999999999987555678999982  32110    00  001111122222111   345899999999


Q ss_pred             CCCeEEEEEEec
Q psy1672         329 SDSGRFYCVAEN  340 (600)
Q Consensus       329 ~d~G~Y~C~a~N  340 (600)
                      +|+|.|.|.+.+
T Consensus        81 ~DsA~YyCa~~~   92 (107)
T d1tjgl1          81 EDFATYYCQQLH   92 (107)
T ss_dssp             GGCSEEEEEECS
T ss_pred             CcCceEEEEECc
Confidence            999999997653

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.08  E-value=0.00056  Score=55.46  Aligned_cols=78  Identities=14%  Similarity=0.325  Sum_probs=49.8

Q ss_pred             ccccccccccccceeeeEeecCCCCeeEEEEc--Ceec---c-CCcc--cCccceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLL---L-NNTA--FSSYQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l---~-~~~~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      ++..+.+..|+.++|.|...+.....+.|++.  ++.+   . ....  .....+.....++   ....|.|.+++.+|+
T Consensus         6 Qp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~---~~~~L~I~~~~~~Ds   82 (106)
T d1lk3l1           6 QPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSG---TDFTLTIDPVEADDT   82 (106)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET---TEEEEEESSCCGGGC
T ss_pred             eCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCC---CEEEeEECCcChhhC
Confidence            34567889999999999987655667999982  3211   1 0000  0111122222222   245899999999999


Q ss_pred             eEEEEEEec
Q psy1672         332 GRFYCVAEN  340 (600)
Q Consensus       332 G~Y~C~a~N  340 (600)
                      |.|.|.+..
T Consensus        83 a~YyCa~~~   91 (106)
T d1lk3l1          83 AIYFCQQSW   91 (106)
T ss_dssp             EEEEEEECS
T ss_pred             CCccccccc
Confidence            999997553

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.07  E-value=0.00067  Score=55.63  Aligned_cols=85  Identities=20%  Similarity=0.381  Sum_probs=51.8

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEEc--Ceecc----CCcccCccceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLL----NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~----~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      ...+..+.+.+|+.++|.|...+ ....+.|++.  +..+.    ............-.........+.|.|.+++.+|+
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             EECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC
Confidence            34467788899999999998864 3457999982  22111    00000000011111111112456799999999999


Q ss_pred             eEEEEEEecCCC
Q psy1672         332 GRFYCVAENRAG  343 (600)
Q Consensus       332 G~Y~C~a~N~~G  343 (600)
                      |.|.|.+....+
T Consensus        84 a~YyCa~~~~~~   95 (113)
T d1h5ba_          84 GTYFCAAEASSG   95 (113)
T ss_dssp             EEEEEEEECSSS
T ss_pred             EEEEEEecCCCC
Confidence            999999876544

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.07  E-value=0.00075  Score=55.24  Aligned_cols=81  Identities=19%  Similarity=0.258  Sum_probs=51.2

Q ss_pred             cccccccccccccceeeeEeecC--CCCeeEEEEc--CeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSI--PPAAISWYWN--GRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~--P~p~i~W~~~--g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      ..+..+.+..|+.++|.|...+.  ....+.|++.  |+....  ......+.....+. ......|+|.+++.+|+|.|
T Consensus         4 Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~--~~~~~gr~~~~~~~-~~~~~~L~I~~l~~~Dsa~Y   80 (112)
T d1sq2n_           4 QTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEE--SISKGGRYVETVNS-GSKSFSLRINDLTVEDGGTY   80 (112)
T ss_dssp             EECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCE--ECCCBTTEEEEEET-TTTEEEEEECSCCGGGCEEE
T ss_pred             ecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeee--eeccCCcEeeEEec-CCceeeeEecCCcCccCEEE
Confidence            34667788899999999987642  4568999982  321110  01111222221111 11346899999999999999


Q ss_pred             EEEEecCC
Q psy1672         335 YCVAENRA  342 (600)
Q Consensus       335 ~C~a~N~~  342 (600)
                      .|.+....
T Consensus        81 yCA~~~~~   88 (112)
T d1sq2n_          81 RCGLGVAG   88 (112)
T ss_dssp             EEEECBTT
T ss_pred             eEEEecCC
Confidence            99877553

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.05  E-value=0.001  Score=53.98  Aligned_cols=81  Identities=19%  Similarity=0.344  Sum_probs=51.4

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEEc--Ceec----cCC--cccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLL----LNN--TAFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l----~~~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ...|..+.+..|+.++|.|.........+.|++.  ++.+    ...  ...+...+.....++   ....|+|.+++.+
T Consensus         5 tQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~l~~~   81 (108)
T d1jhll_           5 TQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSG---TDFTLTISSLEPE   81 (108)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESS---SEEEEEECSCCTT
T ss_pred             EccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCC---CEEEeEeeeeEec
Confidence            3446778889999999999987655667999982  2211    000  000001111111121   2457999999999


Q ss_pred             CCeEEEEEEecC
Q psy1672         330 DSGRFYCVAENR  341 (600)
Q Consensus       330 d~G~Y~C~a~N~  341 (600)
                      |+|.|.|.+.+.
T Consensus        82 Dsa~YyCA~~~~   93 (108)
T d1jhll_          82 DFAMYICQQHNE   93 (108)
T ss_dssp             CCSEEEEEECSS
T ss_pred             cceEEEEeeCCC
Confidence            999999976654

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.04  E-value=0.00051  Score=56.18  Aligned_cols=82  Identities=16%  Similarity=0.194  Sum_probs=52.3

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEE--cCeecc------CCcccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLL------NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~------~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ...+..+.+.+|+.++|.|.........+.|++  .|+.+.      .........+.....+. ......|.|.+++.+
T Consensus         4 ~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~   82 (111)
T d1bd2d1           4 KQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNK-SAKHLSLHIVPSQPG   82 (111)
T ss_dssp             ECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEET-TTTEEEEEESSCCGG
T ss_pred             EccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEc-cCCEEEEEECCCccc
Confidence            445667888899999999988766666789998  333211      00000011122221111 123578999999999


Q ss_pred             CCeEEEEEEec
Q psy1672         330 DSGRFYCVAEN  340 (600)
Q Consensus       330 d~G~Y~C~a~N  340 (600)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCa~~~   93 (111)
T d1bd2d1          83 DSAVYFCAAME   93 (111)
T ss_dssp             GCEEEEEEEES
T ss_pred             ccEEEEeeccC
Confidence            99999998764

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.04  E-value=0.00045  Score=56.12  Aligned_cols=79  Identities=15%  Similarity=0.238  Sum_probs=50.0

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEE--cCeecc----CCc--ccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLL----NNT--AFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~----~~~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..|..+.+..|+.|+|.|.........+.|++  .|+.+.    ...  ......+......   .....|.|.+++.+|
T Consensus         6 QsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~---~~~~~L~I~~~~~~D   82 (107)
T d3cx5k1           6 QTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGS---GTDYSLTISNLEPED   82 (107)
T ss_dssp             EESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEE---TTEEEEECSCCCSCC
T ss_pred             CcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEcc---CCEEEEEEeEeeecC
Confidence            44677888999999999998766666799998  332211    000  0000011111111   124689999999999


Q ss_pred             CeEEEEEEec
Q psy1672         331 SGRFYCVAEN  340 (600)
Q Consensus       331 ~G~Y~C~a~N  340 (600)
                      +|.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (107)
T d3cx5k1          83 IATYFCQHHI   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CCcEEeeeCC
Confidence            9999997653

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.04  E-value=0.00038  Score=57.67  Aligned_cols=83  Identities=19%  Similarity=0.306  Sum_probs=53.2

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEE--cCeeccC-------Cc-ccC---ccceEEEeeCCceeeeeeEEEe
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLN-------NT-AFS---SYQRIFVIEQGEYERKSSLVLT  324 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~~-------~~-~~~---~~~~~~~~~~g~~~~~s~L~I~  324 (600)
                      ...+..+.+..|+.++|.|...+.....+.|++  .|+.+.-       .. ...   ...+.......  .....|+|.
T Consensus         5 ~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~L~i~   82 (118)
T d2ij0c1           5 SQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHAS--PTLSTLTVT   82 (118)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECS--SSEEEEEEC
T ss_pred             EEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccc--ccccccccc
Confidence            344667788899999999998776667899998  3332110       00 000   01122222111  124579999


Q ss_pred             cCCCCCCeEEEEEEecCC
Q psy1672         325 NAQESDSGRFYCVAENRA  342 (600)
Q Consensus       325 ~v~~~d~G~Y~C~a~N~~  342 (600)
                      +++.+|+|.|.|.+.-..
T Consensus        83 ~~~~~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          83 SAHPEDSGFYVCSALAGS  100 (118)
T ss_dssp             SCCGGGCEEEEEEEECSS
T ss_pred             ccccccCceEEEEEecCC
Confidence            999999999999986543

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.03  E-value=0.00065  Score=55.17  Aligned_cols=80  Identities=15%  Similarity=0.328  Sum_probs=51.2

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEE--cCeeccC----C--cccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLN----N--TAFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~~----~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ...+..+.+..|+.++|.|.........+.|++  .|+.+..    .  .......++....++   ....|.|.+++.+
T Consensus         5 tQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~---~~~~L~I~~~~~~   81 (107)
T d1mexl1           5 TQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSG---TDFTLTINNVQSE   81 (107)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET---TEEEEEESSCCGG
T ss_pred             EcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCC---Ceeeeeechhhee
Confidence            344677888999999999987755556799998  3332110    0  000011222222221   2467999999999


Q ss_pred             CCeEEEEEEec
Q psy1672         330 DSGRFYCVAEN  340 (600)
Q Consensus       330 d~G~Y~C~a~N  340 (600)
                      |++.|.|.+..
T Consensus        82 DsA~YyCa~~~   92 (107)
T d1mexl1          82 DLAEYFCQQYN   92 (107)
T ss_dssp             GCSEEEEEECS
T ss_pred             cceeEEEeECC
Confidence            99999997654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.03  E-value=0.00085  Score=54.68  Aligned_cols=78  Identities=18%  Similarity=0.416  Sum_probs=49.0

Q ss_pred             cccccccccccceeeeEeecC-CCCeeEEEE--cCeecc------CCcccCccceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         261 SRYVEAVSSENATVVCRVDSI-PPAAISWYW--NGRLLL------NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~--~g~~l~------~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      +..+.+.+|+.++|.|...+. ....+.|++  .|+.+.      .........+.....+   .....|.|.+++.+|+
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~~~~~Ds   81 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITED---RKSSTLILPHATLRDT   81 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTT---CSEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeeccc---CCeeeehhcccccCCc
Confidence            446788899999999987643 345689998  332111      0010111112222221   2356899999999999


Q ss_pred             eEEEEEEecC
Q psy1672         332 GRFYCVAENR  341 (600)
Q Consensus       332 G~Y~C~a~N~  341 (600)
                      |.|.|.+...
T Consensus        82 a~YyCa~~~~   91 (110)
T d2esvd1          82 AVYYCIVVRS   91 (110)
T ss_dssp             EEEEEEEEES
T ss_pred             eEEEEEEeCC
Confidence            9999987643

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00071  Score=55.56  Aligned_cols=82  Identities=20%  Similarity=0.287  Sum_probs=51.0

Q ss_pred             cccccccccccccccceeeeEeecC-CCCeeEEEEc--Ceecc------CCcc----c--CccceEEEeeCCceeeeeeE
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSI-PPAAISWYWN--GRLLL------NNTA----F--SSYQRIFVIEQGEYERKSSL  321 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~~--g~~l~------~~~~----~--~~~~~~~~~~~g~~~~~s~L  321 (600)
                      +...|..+++..|++|+|.|.+.+. ....+.|++.  +..+.      ....    .  ....++.....+   ....|
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~---~~~~L   79 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLG---DTFVL   79 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEET---TEEEE
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCC---CChhc
Confidence            3455677888999999999998743 3456999992  21110      0000    0  001122222221   23579


Q ss_pred             EEecCCCCCCeEEEEEEecC
Q psy1672         322 VLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       322 ~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      +|.+++.+|+|.|.|.+...
T Consensus        80 ~I~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          80 TLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             EESSCCGGGCEEEEEEEEET
T ss_pred             EEccCCCCCCEEEeEeEcCC
Confidence            99999999999999997643

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.01  E-value=0.0003  Score=57.96  Aligned_cols=81  Identities=20%  Similarity=0.375  Sum_probs=50.0

Q ss_pred             cccccccccccccceeeeEeecC-CCCeeEEEEc-----Ceecc------CCcc----cC-ccceEEEeeCCceeeeeeE
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSI-PPAAISWYWN-----GRLLL------NNTA----FS-SYQRIFVIEQGEYERKSSL  321 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~~-----g~~l~------~~~~----~~-~~~~~~~~~~g~~~~~s~L  321 (600)
                      ..+..+.+.+|+.++|.|.+.+. ....+.|++.     .+.+.      ....    .. ...+.....+. ......|
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~L   81 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESS-DSRRPFL   81 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEEST-TSSSCEE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeC-CCCeEEE
Confidence            34677889999999999998863 4567999983     12110      0000    00 01111111111 1234579


Q ss_pred             EEecCCCCCCeEEEEEEec
Q psy1672         322 VLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       322 ~I~~v~~~d~G~Y~C~a~N  340 (600)
                      +|.+++.+|+|.|.|.+..
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EECSCCGGGCEEEEEEEEC
T ss_pred             eecccCCCCCcEEEEeEcC
Confidence            9999999999999998753

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.01  E-value=0.00068  Score=54.94  Aligned_cols=79  Identities=16%  Similarity=0.246  Sum_probs=51.2

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEEc--Ceecc---C-C--cccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLL---N-N--TAFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~---~-~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..|..+.+..|+.++|.|.........+.|++.  ++.+.   . .  .......++....++   ....|.|.+++.+|
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~---~~~~L~I~~~~~~D   81 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSG---TEFTLTISGLQFDD   81 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET---TEEEEEEESCCGGG
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccC---CEEEEEEccccccC
Confidence            346778899999999999887655667999983  32111   0 0  001111222222222   24579999999999


Q ss_pred             CeEEEEEEec
Q psy1672         331 SGRFYCVAEN  340 (600)
Q Consensus       331 ~G~Y~C~a~N  340 (600)
                      +|.|.|.+..
T Consensus        82 sa~YyCa~~~   91 (106)
T d1op3k1          82 FATYHCQHYA   91 (106)
T ss_dssp             CSEEEEEEEC
T ss_pred             CCcEeeeeCC
Confidence            9999998764

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.00  E-value=0.00075  Score=55.36  Aligned_cols=85  Identities=16%  Similarity=0.171  Sum_probs=51.5

Q ss_pred             ccccccccccccccceeeeEeecC-CCCeeEEEE--cCeeccC------C-cccCccceEEEeeCCceeeeeeEEEecCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSI-PPAAISWYW--NGRLLLN------N-TAFSSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~--~g~~l~~------~-~~~~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      ...+..+.+.+|+.|+|.|..... ....+.|++  .+..+..      . .......+......+. .....|.|.+++
T Consensus         4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~   82 (114)
T d2ak4d1           4 TQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKS-TSSFNFTITASQ   82 (114)
T ss_dssp             ECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETT-TTEEEEEESSCC
T ss_pred             EecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCC-CCEEEEeecccc
Confidence            344677888999999999987643 345688998  3322110      0 0000011111111111 124579999999


Q ss_pred             CCCCeEEEEEEecCCC
Q psy1672         328 ESDSGRFYCVAENRAG  343 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~~G  343 (600)
                      .+|+|.|.|.+....+
T Consensus        83 ~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          83 VVDSAVYFCALSGFYN   98 (114)
T ss_dssp             GGGCEEEEEEEECSBT
T ss_pred             cccCCCceEeCCCCCC
Confidence            9999999998876654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.97  E-value=0.00077  Score=55.53  Aligned_cols=86  Identities=16%  Similarity=0.255  Sum_probs=53.1

Q ss_pred             ccccccccccccccceeeeEeec-CCCCeeEEEE--cCeecc-----CCcc----cCccceEEEeeCCceeeeeeEEEec
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDS-IPPAAISWYW--NGRLLL-----NNTA----FSSYQRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g-~P~p~i~W~~--~g~~l~-----~~~~----~~~~~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      ...+..+.+.+|+.++|.|...+ .....+.|++  .++.+.     ....    .....|.....+. ......|+|.+
T Consensus         4 tQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~-~~~~~~L~I~~   82 (116)
T d1tvda_           4 TQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHIL-TQKAFHLVISP   82 (116)
T ss_dssp             ECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEG-GGTEEEEEESS
T ss_pred             EccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecC-ceeEEeeeecC
Confidence            44567788899999999998764 3456799997  232211     0000    0011122222111 11235799999


Q ss_pred             CCCCCCeEEEEEEecCCCc
Q psy1672         326 AQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       326 v~~~d~G~Y~C~a~N~~G~  344 (600)
                      ++.+|+|.|.|.+....+.
T Consensus        83 ~~~~Dsg~YyCa~~~~~~~  101 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPPPT  101 (116)
T ss_dssp             CCGGGCEEEEEEEECTTTT
T ss_pred             ccccccccceeeEecCCCC
Confidence            9999999999988765543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.96  E-value=0.00025  Score=62.65  Aligned_cols=18  Identities=6%  Similarity=0.167  Sum_probs=9.2

Q ss_pred             cCCCCCccEEEccCCCCC
Q psy1672          95 LDGLTNLIEIDLSDNLLT  112 (600)
Q Consensus        95 f~~l~~L~~L~Ls~N~l~  112 (600)
                      +....+|++|+|++|.+.
T Consensus        40 L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             HTTCSCCCEEECTTSCCB
T ss_pred             HhhCCccceeeccccccc
Confidence            344455555555555544

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.95  E-value=0.00085  Score=54.62  Aligned_cols=79  Identities=18%  Similarity=0.347  Sum_probs=51.3

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEE--cCee---cc---CCcccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRL---LL---NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~---l~---~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..+..+.+.+|+.++|.|...+.....+.|++  .++.   +.   .........+.....++   ....|+|.+++.+|
T Consensus         8 QsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~---~~~~L~I~~l~~~D   84 (109)
T d1bwwa_           8 QSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSG---TDYTFTISSLQPED   84 (109)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET---TEEEEEESSCCGGG
T ss_pred             eeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCC---CEeEEEEeeceeCc
Confidence            34677889999999999998766566789998  2221   11   00001111222222222   23579999999999


Q ss_pred             CeEEEEEEec
Q psy1672         331 SGRFYCVAEN  340 (600)
Q Consensus       331 ~G~Y~C~a~N  340 (600)
                      +|.|.|.+..
T Consensus        85 sa~YyCA~~~   94 (109)
T d1bwwa_          85 IATYYCQQYQ   94 (109)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEeecC
Confidence            9999998764

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0018  Score=52.32  Aligned_cols=76  Identities=20%  Similarity=0.318  Sum_probs=44.0

Q ss_pred             cccccccccceeeeEeecCC---CCeeEEEE--cCe-ecc---CCc-----ccCc-cceEEEeeCCceeeeeeEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIP---PAAISWYW--NGR-LLL---NNT-----AFSS-YQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P---~p~i~W~~--~g~-~l~---~~~-----~~~~-~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      .+.+..|++++|.|.....+   ...+.|++  +.. .+.   ...     ..+. ..+.....     ...+|.|.+++
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~sL~I~~v~   77 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDS-----DSWTLRLHNLQ   77 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEET-----TTTEEEECSCC
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccC-----CeEEEEECCCC
Confidence            45678899999999886322   23455654  221 110   000     0000 11111111     13479999999


Q ss_pred             CCCCeEEEEEEecCCC
Q psy1672         328 ESDSGRFYCVAENRAG  343 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~~G  343 (600)
                      .+|+|.|.|.+.....
T Consensus        78 ~~D~G~Y~C~V~~~~~   93 (110)
T d1ncna_          78 IKDKGLYQCIIHHKKP   93 (110)
T ss_dssp             GGGCEEEEEEEEEECS
T ss_pred             hhHCEEEEEEEEecCC
Confidence            9999999999875543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.92  E-value=0.00092  Score=54.42  Aligned_cols=79  Identities=20%  Similarity=0.343  Sum_probs=50.9

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEE--cCee----ccCCcccC--ccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRL----LLNNTAFS--SYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~----l~~~~~~~--~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..|..+.+.+|+.++|.|.........+.|++  .++.    +.......  ...++....+   .....|.|.+++.+|
T Consensus         6 QsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~---~~~~~L~I~~~~~~D   82 (109)
T d1mqkl_           6 QTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGS---GTQFSLKINSLLPED   82 (109)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE---TTEEEEEESSCCGGG
T ss_pred             CcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEecc---CCEEEEEEccccccC
Confidence            44677888899999999988755556799998  3331    11111000  1112222211   134689999999999


Q ss_pred             CeEEEEEEec
Q psy1672         331 SGRFYCVAEN  340 (600)
Q Consensus       331 ~G~Y~C~a~N  340 (600)
                      +|.|.|.+..
T Consensus        83 Sa~YyCA~~~   92 (109)
T d1mqkl_          83 FGSYYCQHHY   92 (109)
T ss_dssp             CEEEEEEECS
T ss_pred             CeeEEEeeeC
Confidence            9999998763

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.89  E-value=0.0007  Score=55.63  Aligned_cols=84  Identities=13%  Similarity=0.222  Sum_probs=51.4

Q ss_pred             ccccccccccccccceeeeEeec-CCCCeeEEEE--cCeecc----C---CcccCccceEEEeeCCceeeeeeEEEecCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDS-IPPAAISWYW--NGRLLL----N---NTAFSSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g-~P~p~i~W~~--~g~~l~----~---~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      ...+..+.+.+|+.|+|.|.... .....+.|++  .++.+.    .   ........+..+..+. ......|.|.+++
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~   81 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQK-PKSSIGLIITATQ   81 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEG-GGTEEEEEECSCC
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEec-cCCEEEEEECCCC
Confidence            34467788999999999998763 3445689998  232211    0   0000011122221111 1134679999999


Q ss_pred             CCCCeEEEEEEecCC
Q psy1672         328 ESDSGRFYCVAENRA  342 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~~  342 (600)
                      .+|+|.|.|.+....
T Consensus        82 ~~Dsa~YyCa~~~~~   96 (115)
T d1fo0a_          82 IEDSAVYFCAMRGDY   96 (115)
T ss_dssp             GGGCEEEEEEEECCC
T ss_pred             ccccccccceeecCC
Confidence            999999999987544

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.88  E-value=0.0012  Score=54.00  Aligned_cols=79  Identities=19%  Similarity=0.343  Sum_probs=49.8

Q ss_pred             ccccccccccccceeeeEeecCC-CCeeEEEE--cCeecc----CC--cccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIP-PAAISWYW--NGRLLL----NN--TAFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P-~p~i~W~~--~g~~l~----~~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      .+..+.+.+|+.|+|.|...+.. ...+.|++  .|+.+.    ..  .......+..+..+.   ....|.|.+++.+|
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~D   80 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDR---KSSTLILHRATLRD   80 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTS---SEEEEEESSCCGGG
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccC---CeeEEEEeeccccc
Confidence            35567788999999999886544 34589998  333221    00  001111122222222   34579999999999


Q ss_pred             CeEEEEEEecC
Q psy1672         331 SGRFYCVAENR  341 (600)
Q Consensus       331 ~G~Y~C~a~N~  341 (600)
                      +|.|.|.+...
T Consensus        81 sa~YyCa~~~~   91 (112)
T d1kgcd1          81 AAVYYCILPLA   91 (112)
T ss_dssp             CEEEEEECCCC
T ss_pred             ceeEeeeEecC
Confidence            99999987543

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.87  E-value=0.00089  Score=55.06  Aligned_cols=83  Identities=24%  Similarity=0.442  Sum_probs=51.5

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEE--cCeecc------CCcccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLL------NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~------~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..+..+.+..|+.++|.|...+. ...+.|++  .|+.+.      .........+.....+. ......|.|.+++.+|
T Consensus         5 Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~D   82 (115)
T d1ogad1           5 QSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGD-ARKDSSLHITAAQPGD   82 (115)
T ss_dssp             EECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECT-TSSEEEEEESSCCGGG
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeeccccccccc-ccceeeeeecCCCccc
Confidence            34667888999999999987653 45799998  332111      00000001111111111 1245689999999999


Q ss_pred             CeEEEEEEecCCC
Q psy1672         331 SGRFYCVAENRAG  343 (600)
Q Consensus       331 ~G~Y~C~a~N~~G  343 (600)
                      +|.|.|.+....+
T Consensus        83 sa~YyCa~~~~~~   95 (115)
T d1ogad1          83 TGLYLCAGAGSQG   95 (115)
T ss_dssp             CEEEEEEEECTTS
T ss_pred             eeeEcccccCCCC
Confidence            9999998875443

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00066  Score=56.21  Aligned_cols=80  Identities=20%  Similarity=0.336  Sum_probs=48.9

Q ss_pred             cccccccccccceeeeEeecC--C-----CCeeEEEEcCeecc-------CC--c--ccCccceEEEeeCCceeeeeeEE
Q psy1672         261 SRYVEAVSSENATVVCRVDSI--P-----PAAISWYWNGRLLL-------NN--T--AFSSYQRIFVIEQGEYERKSSLV  322 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~--P-----~p~i~W~~~g~~l~-------~~--~--~~~~~~~~~~~~~g~~~~~s~L~  322 (600)
                      +..+++.+|+.|+|.|.....  +     ...+.|++....-.       ..  .  .....+|..+..+ .......|.
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~sL~   86 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGD-PQTKNCTLS   86 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSC-GGGTBCCEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeee-CcCCEEEEE
Confidence            567889999999999987511  1     12467877422110       00  0  0011234444332 123356899


Q ss_pred             EecCCCCCCeEEEEEEecC
Q psy1672         323 LTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       323 I~~v~~~d~G~Y~C~a~N~  341 (600)
                      |.+++.+|+|.|.|.+...
T Consensus        87 I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          87 IRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             ECSCCGGGCEEEEEEEEET
T ss_pred             ECCCChHHCEEEEEEEEeC
Confidence            9999999999999999754

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.86  E-value=0.0011  Score=53.78  Aligned_cols=80  Identities=19%  Similarity=0.322  Sum_probs=51.1

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEEc--Ceecc----CCc--ccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLL----NNT--AFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~----~~~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..+..+.+.+|+.|+|.|.........+.|++.  +..+.    ...  ......+.....++   ....|.|.+++.+|
T Consensus         6 Q~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~---~~~~L~I~~~~~~D   82 (107)
T d1d5il1           6 QSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSG---QDYSLTISSLEYED   82 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET---TEEEEEESSCCGGG
T ss_pred             eeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccC---CEEEccccccCCcC
Confidence            346678889999999999887666667899982  32111    000  00111122222222   24589999999999


Q ss_pred             CeEEEEEEecC
Q psy1672         331 SGRFYCVAENR  341 (600)
Q Consensus       331 ~G~Y~C~a~N~  341 (600)
                      +|.|.|.+...
T Consensus        83 sa~YyCa~~~~   93 (107)
T d1d5il1          83 MGIYYCLQYDE   93 (107)
T ss_dssp             CEEEEEEECSS
T ss_pred             CEEEEeeeccC
Confidence            99999976543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.85  E-value=0.00047  Score=60.86  Aligned_cols=111  Identities=16%  Similarity=0.159  Sum_probs=76.0

Q ss_pred             CCCCCccEEEccCC-CCCCCC----ccccCCCCCCCEEEccCCCCCccCc----ccccCCCCcceeeCCCCcCcccC---
Q psy1672          96 DGLTNLIEIDLSDN-LLTSIP----SLTFQSVRFLRDLNLARNPISKIEK----GAFQFVPGLVKLDMSESRLEHIS---  163 (600)
Q Consensus        96 ~~l~~L~~L~Ls~N-~l~~l~----~~~f~~l~~L~~L~Ls~N~i~~l~~----~~~~~l~~L~~L~Ls~n~l~~i~---  163 (600)
                      .+.++|++|+|+++ .++.-.    ...+.....|+.|+|++|.+..-..    ..+...+.|+.|+|++|.|....   
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34578888888764 454210    1135566789999999998874322    33456788999999999987643   


Q ss_pred             -hhhhcCCCCCCEEEcCCCcCCCCCc-------ccccccccccEEEccCCc
Q psy1672         164 -PEAFTGAKSLESIKLNGNRLSHFPV-------RSVEPLLKLMMIELHDNP  206 (600)
Q Consensus       164 -~~~~~~l~~L~~L~Ls~N~l~~l~~-------~~~~~l~~L~~L~l~~N~  206 (600)
                       ..++...+.|+.|+|++|.+..+..       ..+...+.|+.|+++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence             2345677899999999998877652       223344677788876653

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.80  E-value=0.002  Score=52.42  Aligned_cols=78  Identities=22%  Similarity=0.350  Sum_probs=49.6

Q ss_pred             cccccccccccceeeeEeecCC--CCeeEEEEc--Ceecc---C---CcccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         261 SRYVEAVSSENATVVCRVDSIP--PAAISWYWN--GRLLL---N---NTAFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P--~p~i~W~~~--g~~l~---~---~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      +..+.+.+|+.++|.|...+..  ...+.|++.  ++.+.   .   ........+.....++   ....|.|.+++.+|
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~---~~~~L~I~~~~~~D   83 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSG---TSATLGITGLQTGD   83 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET---TEEEEEESSCCGGG
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCC---CEeeeEEeeecccc
Confidence            4468889999999999886433  346999982  22111   0   0111112223332222   24689999999999


Q ss_pred             CeEEEEEEecC
Q psy1672         331 SGRFYCVAENR  341 (600)
Q Consensus       331 ~G~Y~C~a~N~  341 (600)
                      +|.|.|.+...
T Consensus        84 sa~YyCA~~~~   94 (111)
T d1rzfl1          84 EADYYCGTWDS   94 (111)
T ss_dssp             CSEEEEEEEET
T ss_pred             CcceEEeecCC
Confidence            99999987643

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.80  E-value=0.0018  Score=52.77  Aligned_cols=81  Identities=17%  Similarity=0.300  Sum_probs=50.0

Q ss_pred             ccccccccccccceeeeEeecCCC--CeeEEEEc--Ceecc----C-Cccc-CccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPP--AAISWYWN--GRLLL----N-NTAF-SSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~--p~i~W~~~--g~~l~----~-~~~~-~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ++..+.+..|+.++|.|...+...  .-+.|++.  ++.+.    . .... ....+.....+. ......|.|.+++.+
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~l~~~   84 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDR-SSNSASLTISGLKTE   84 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-TTTEEEEEECSCCGG
T ss_pred             cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecC-CCCccccccccCCcc
Confidence            355688999999999999875432  34899983  33211    0 0000 011222222111 123568999999999


Q ss_pred             CCeEEEEEEecC
Q psy1672         330 DSGRFYCVAENR  341 (600)
Q Consensus       330 d~G~Y~C~a~N~  341 (600)
                      |++.|.|.+.+.
T Consensus        85 Dsa~YyCA~~~~   96 (111)
T d1cd0a_          85 DEADYYCQSYDA   96 (111)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cCcEEEEeeccC
Confidence            999999987643

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.0016  Score=52.98  Aligned_cols=82  Identities=16%  Similarity=0.258  Sum_probs=49.0

Q ss_pred             ccccccccccccceeeeEeec---CC-C--CeeEEEEcCee----c-cCC----cccCccceEEEeeCCceeeeeeEEEe
Q psy1672         260 DSRYVEAVSSENATVVCRVDS---IP-P--AAISWYWNGRL----L-LNN----TAFSSYQRIFVIEQGEYERKSSLVLT  324 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g---~P-~--p~i~W~~~g~~----l-~~~----~~~~~~~~~~~~~~g~~~~~s~L~I~  324 (600)
                      .|..+.+.+|+.|+|.|.+..   .+ .  ..+.|++....    + ...    .......+..+..+ .......|.|.
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~sL~I~   84 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGN-MDHKVCNLLLK   84 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSC-GGGTBCCEEEC
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEe-CcCCEEEEEEC
Confidence            356788999999999998752   11 1  23456663211    1 000    00011234444322 12245679999


Q ss_pred             cCCCCCCeEEEEEEecCC
Q psy1672         325 NAQESDSGRFYCVAENRA  342 (600)
Q Consensus       325 ~v~~~d~G~Y~C~a~N~~  342 (600)
                      +++.+|+|.|.|.+....
T Consensus        85 ~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          85 DLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             SCCGGGCEEEEEEEECC-
T ss_pred             CCChhHCEEEEEEEEeCC
Confidence            999999999999997654

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.76  E-value=0.0014  Score=51.61  Aligned_cols=72  Identities=18%  Similarity=0.320  Sum_probs=44.3

Q ss_pred             cccceeeeEeecCCCCeeEEEE--cCeec---c--CCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         269 SENATVVCRVDSIPPAAISWYW--NGRLL---L--NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p~i~W~~--~g~~l---~--~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      |+.|+|.|.........+.|++  .++..   .  .........+.....+ ...+...|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~-~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLN-KASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEE-TTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEec-CCCCEEeEEeeccccCcCccceeeEecC
Confidence            7889999998766677899998  33211   0  0000001112221111 1123468999999999999999988754

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.75  E-value=0.00069  Score=55.26  Aligned_cols=81  Identities=20%  Similarity=0.321  Sum_probs=49.9

Q ss_pred             cccccccccccccccceeeeEeecCCCCeeEEEE--cCeecc----C--Cc--ccC-ccceEEEeeCCceeeeeeEEEec
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLL----N--NT--AFS-SYQRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~----~--~~--~~~-~~~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      +...|..+.+..|+.++|.|...+ ....+.|++  .|+.+.    .  ..  ... ...+.....  .......|+|.+
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~   80 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASR--PSQEQFSLILES   80 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEE--EETTEEEEEESS
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEe--ccCCEEEEEECC
Confidence            344577888899999999998764 356799998  333211    0  00  000 000111110  011246799999


Q ss_pred             CCCCCCeEEEEEEec
Q psy1672         326 AQESDSGRFYCVAEN  340 (600)
Q Consensus       326 v~~~d~G~Y~C~a~N  340 (600)
                      ++.+|+|.|.|.+..
T Consensus        81 ~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          81 ATPSQTSVYFCASGG   95 (110)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCHhhCEEEEEeeCC
Confidence            999999999998764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=96.75  E-value=0.00053  Score=55.76  Aligned_cols=79  Identities=19%  Similarity=0.337  Sum_probs=49.8

Q ss_pred             cccccccccccccceeeeEeecC-CCCeeEEEEc--Cee---ccC-C--cccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSI-PPAAISWYWN--GRL---LLN-N--TAFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~-P~p~i~W~~~--g~~---l~~-~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ..|..+.+..|+.++|.|..... ....+.|++.  ++.   +.. .  .......+.....++   ....|+|.+++.+
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~---~~~~L~I~~~~~~   82 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSG---TDFTLTISRLEPE   82 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET---TEEEEEESSCCGG
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCC---CEEEEEehHheec
Confidence            44677888999999999987643 3456899983  331   110 0  001111122222222   2457999999999


Q ss_pred             CCeEEEEEEec
Q psy1672         330 DSGRFYCVAEN  340 (600)
Q Consensus       330 d~G~Y~C~a~N  340 (600)
                      |+|.|.|.+.+
T Consensus        83 Dsa~YyCa~~~   93 (108)
T d2fx7l1          83 DFAVYYCQQYG   93 (108)
T ss_dssp             GCSEEEEEECS
T ss_pred             ccEEEeeecCC
Confidence            99999998753

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.74  E-value=0.0021  Score=52.62  Aligned_cols=77  Identities=19%  Similarity=0.430  Sum_probs=48.9

Q ss_pred             cccccccccccceeeeEeecCC--CCeeEEEEc--Cee---cc---CCcccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         261 SRYVEAVSSENATVVCRVDSIP--PAAISWYWN--GRL---LL---NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P--~p~i~W~~~--g~~---l~---~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      +..+.+..|+.++|.|.+.+..  ...+.|++.  ++.   +.   .........+.....++   ....|.|.+++.+|
T Consensus         7 ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~v~~~D   83 (114)
T d2rhea_           7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSG---TSASLAISGLESED   83 (114)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEET---TEEEEEESSCCGGG
T ss_pred             CCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCC---CeeeeEecccCccc
Confidence            3457788999999999987543  457999983  221   11   00111111222222221   24589999999999


Q ss_pred             CeEEEEEEec
Q psy1672         331 SGRFYCVAEN  340 (600)
Q Consensus       331 ~G~Y~C~a~N  340 (600)
                      ++.|.|.+..
T Consensus        84 sA~YyCA~~~   93 (114)
T d2rhea_          84 EADYYCAAWN   93 (114)
T ss_dssp             CEEEEEEEEE
T ss_pred             CceEEEeecC
Confidence            9999998764

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.69  E-value=0.00059  Score=56.57  Aligned_cols=79  Identities=18%  Similarity=0.325  Sum_probs=49.6

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEEc--Cee---ccCC-c--ccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRL---LLNN-T--AFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~---l~~~-~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..+..+.+..|+.++|.|...+.-...+.|++.  ++.   +... .  ......+.....+   .....|.|.+++.+|
T Consensus         6 Q~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~---~~~~~L~I~~~~~~D   82 (119)
T d1f3rb2           6 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGS---GTDYTLTISSLQPED   82 (119)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE---BTEEEEEECSCCGGG
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCC---CCEEEEEcccCccCC
Confidence            345677889999999999887655567999983  221   1100 0  0001111211111   123579999999999


Q ss_pred             CeEEEEEEec
Q psy1672         331 SGRFYCVAEN  340 (600)
Q Consensus       331 ~G~Y~C~a~N  340 (600)
                      +|.|.|.+..
T Consensus        83 savYyCa~~~   92 (119)
T d1f3rb2          83 VATYFCYQYN   92 (119)
T ss_dssp             CSEEEEEEES
T ss_pred             CeEEEeeccC
Confidence            9999998664

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.69  E-value=0.00073  Score=55.01  Aligned_cols=78  Identities=17%  Similarity=0.398  Sum_probs=49.7

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEE--cCeec----cCCcc--cCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLL----LNNTA--FSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l----~~~~~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      +..+.+.+|+.++|.|.........+.|++  .++.+    .....  .....+.....++   ....|.|.+++.+|++
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~l~~~Dsa   83 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSG---NMATLTISRVEAGDEA   83 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET---TEEEEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCC---CccceEEeeeccCCCE
Confidence            445778899999999997654556799998  33221    11110  0111222222222   3458999999999999


Q ss_pred             EEEEEEecC
Q psy1672         333 RFYCVAENR  341 (600)
Q Consensus       333 ~Y~C~a~N~  341 (600)
                      .|.|.+...
T Consensus        84 vYyCA~~~~   92 (109)
T d1w72l1          84 DYYCQVWDS   92 (109)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEecCC
Confidence            999987654

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.67  E-value=0.0021  Score=52.35  Aligned_cols=80  Identities=18%  Similarity=0.287  Sum_probs=49.6

Q ss_pred             cccccccccccccceeeeEeecC----CCCeeEEEE--cCeecc----C--CcccCccceEEEeeCCceeeeeeEEEecC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSI----PPAAISWYW--NGRLLL----N--NTAFSSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~----P~p~i~W~~--~g~~l~----~--~~~~~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      ..|..+.+..|+.|+|.|.....    ....+.|++  .|+.+.    .  ........+.....++   ....|.|.++
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~---~~~~L~I~~~   82 (111)
T d1j05a_           6 QSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR---TDFTLIIDPV   82 (111)
T ss_dssp             EECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSS---SEEEEEESSC
T ss_pred             ccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCC---CEEEEEEccc
Confidence            34677888899999999987521    223499998  343211    0  0011111222222222   3468999999


Q ss_pred             CCCCCeEEEEEEecC
Q psy1672         327 QESDSGRFYCVAENR  341 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N~  341 (600)
                      +.+|+|.|.|.+.+.
T Consensus        83 ~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          83 EADDVATYYCQQTNE   97 (111)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             ccccCccEEEeecCC
Confidence            999999999987643

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.66  E-value=0.00028  Score=56.17  Aligned_cols=80  Identities=25%  Similarity=0.495  Sum_probs=49.3

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEE--cCeeccC------CcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEE
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLN------NTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRF  334 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~~------~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y  334 (600)
                      .+.|.+|+.|+|.|.... ....+.|++  .|+.+..      .......++..+..+ .......|.|.+++.+|+|.|
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~~~L~I~~~~~~Dsa~Y   79 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLD-TSKKSSSLLITASRAADTASY   79 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCB-GGGTBCCBCCSSCCSTTCSCC
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeecc-CcceecccCcCCCCcccCEEE
Confidence            356789999999998764 345799998  3332210      000011112211111 112345799999999999999


Q ss_pred             EEEEecCCCc
Q psy1672         335 YCVAENRAGI  344 (600)
Q Consensus       335 ~C~a~N~~G~  344 (600)
                      .|.+....|.
T Consensus        80 yCA~~~~~g~   89 (96)
T d1ymmd1          80 FCATDTTSGT   89 (96)
T ss_dssp             EEEEEETTSC
T ss_pred             eEeEecCCCC
Confidence            9998776554

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.66  E-value=0.0018  Score=52.57  Aligned_cols=77  Identities=17%  Similarity=0.398  Sum_probs=49.9

Q ss_pred             cccccccccccceeeeEeecCCCCeeEEEE--cCeec---c-CC--cccCccceEEEeeCCceeeeeeEEEecCCCCCCe
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLL---L-NN--TAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG  332 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l---~-~~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G  332 (600)
                      |..+.+..|+.++|.|.........+.|++  .|+.+   . ..  .......++....++   ....|.|.+++.+|+|
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~---~~~~L~I~~l~~~Dsa   82 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSG---TTATLTISGAQPEDEA   82 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEET---TEEEEEETTCCGGGCS
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCC---CEeeeeEcCccccCCc
Confidence            456778899999999988655555799998  33321   1 00  001112233332222   2457999999999999


Q ss_pred             EEEEEEec
Q psy1672         333 RFYCVAEN  340 (600)
Q Consensus       333 ~Y~C~a~N  340 (600)
                      .|.|.+..
T Consensus        83 ~YyCA~~~   90 (108)
T d1nfde1          83 AYYCLSSY   90 (108)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeec
Confidence            99998764

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=96.64  E-value=0.0023  Score=52.33  Aligned_cols=79  Identities=16%  Similarity=0.257  Sum_probs=48.4

Q ss_pred             cccccccccccccceeeeEeecC------CCCeeEEEE--cCeecc---CC---cccCccceEEEeeCCceeeeeeEEEe
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSI------PPAAISWYW--NGRLLL---NN---TAFSSYQRIFVIEQGEYERKSSLVLT  324 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~------P~p~i~W~~--~g~~l~---~~---~~~~~~~~~~~~~~g~~~~~s~L~I~  324 (600)
                      ..|..+.+..|+.++|.|...+.      ....+.|++  .|+.+.   ..   .......+.....+   .....|.|.
T Consensus         6 Q~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s---~~~~~L~I~   82 (113)
T d1q9ra1           6 QSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGS---GTDFTLTIT   82 (113)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE---TTEEEEEES
T ss_pred             ccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCC---CCeEeEEec
Confidence            44677888999999999987532      123589998  232110   00   00011112222111   134579999


Q ss_pred             cCCCCCCeEEEEEEec
Q psy1672         325 NAQESDSGRFYCVAEN  340 (600)
Q Consensus       325 ~v~~~d~G~Y~C~a~N  340 (600)
                      +++.+|+|.|.|.+..
T Consensus        83 ~l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          83 SVQAEDLAVYYCKQSY   98 (113)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             ccccCCCeEEEecccC
Confidence            9999999999998754

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.64  E-value=0.0012  Score=54.03  Aligned_cols=79  Identities=22%  Similarity=0.329  Sum_probs=49.8

Q ss_pred             cccccccccccceeeeEeecCC---CCeeEEEE--cCeecc----CC--cccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         261 SRYVEAVSSENATVVCRVDSIP---PAAISWYW--NGRLLL----NN--TAFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P---~p~i~W~~--~g~~l~----~~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      |..+.+..|++|+|.|...+..   ...+.|++  .|+.+.    ..  .......+......+   ....|.|.+++.+
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~L~I~~l~~~   83 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSG---NSASLTISGLQAE   83 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET---TEEEEEECSCCGG
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCC---CEeeEEeCcCccc
Confidence            5568889999999999877532   34589998  232210    00  001111122222222   3568999999999


Q ss_pred             CCeEEEEEEecCC
Q psy1672         330 DSGRFYCVAENRA  342 (600)
Q Consensus       330 d~G~Y~C~a~N~~  342 (600)
                      |+|.|.|.+.+..
T Consensus        84 Dsa~YyCa~~~~~   96 (112)
T d1lgva1          84 DEADYYCSSYDGS   96 (112)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             cCEEEEEeeecCC
Confidence            9999999887543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.62  E-value=0.00093  Score=54.44  Aligned_cols=83  Identities=19%  Similarity=0.213  Sum_probs=51.5

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEE--cCeecc------CCcccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLL------NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~------~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ...+..+.+.+|+.++|.|.........+.|++  .|+.+.      .........+.....+. ......|.|.+++.+
T Consensus         4 tQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~-~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           4 TQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNK-EATSFHLQKASVQES   82 (110)
T ss_dssp             EECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBT-TTTBCCEEEEEECGG
T ss_pred             EeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecC-CCCEEeeeecCcCcC
Confidence            344677889999999999987755556799998  333211      00000001112111111 113467999999999


Q ss_pred             CCeEEEEEEecC
Q psy1672         330 DSGRFYCVAENR  341 (600)
Q Consensus       330 d~G~Y~C~a~N~  341 (600)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (110)
T d1ac6a_          83 DSAVYYCALSGG   94 (110)
T ss_dssp             GCEEEEEEEEET
T ss_pred             CCcccceeecCC
Confidence            999999988653

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=96.62  E-value=0.0027  Score=50.61  Aligned_cols=71  Identities=24%  Similarity=0.423  Sum_probs=47.3

Q ss_pred             ccccccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         266 AVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      +..|+.++|.|.+.|.-+  ..|.|.++|+.+......   ....-..+|++...+.|.+..   .+.+.|+|.+....
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~---t~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~s   86 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYE---TSFFVNRDYSFHKLSYLTFIP---SDDDIYDCKVEHWG   86 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEE---CCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCcee---eeeEECCCCCEEEEEEeEEcC---CCCCEEEEEEEECC
Confidence            456788899999998643  478999999877643211   112223445666667776653   34557999999764

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.57  E-value=0.0022  Score=52.18  Aligned_cols=76  Identities=21%  Similarity=0.292  Sum_probs=48.1

Q ss_pred             ccccccccccceeeeEeecCCC---CeeEEEE--cCeecc----CCc--ccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPP---AAISWYW--NGRLLL----NNT--AFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~---p~i~W~~--~g~~l~----~~~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..+.+..|+.++|.|...+...   ..+.|++  .|+.+.    ...  ......++.....+   ....|.|.+++.+|
T Consensus         8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~---~~~~L~I~~~~~~D   84 (110)
T d1oaql_           8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG---NKAALTITGAQTED   84 (110)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEET---TEEEEEEESCCGGG
T ss_pred             CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccc---cceeeecCCCCccc
Confidence            3577889999999999874332   2389998  343221    000  01111223222222   24689999999999


Q ss_pred             CeEEEEEEec
Q psy1672         331 SGRFYCVAEN  340 (600)
Q Consensus       331 ~G~Y~C~a~N  340 (600)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (110)
T d1oaql_          85 EAIYFCALWY   94 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             cEeEEEEccc
Confidence            9999998764

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.56  E-value=0.0025  Score=52.64  Aligned_cols=82  Identities=20%  Similarity=0.306  Sum_probs=50.4

Q ss_pred             cccccccccccccceeeeEeecCC--CCeeEEEE--cCeecc------CC-cc---cCccceEEEeeCCceeeeeeEEEe
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIP--PAAISWYW--NGRLLL------NN-TA---FSSYQRIFVIEQGEYERKSSLVLT  324 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P--~p~i~W~~--~g~~l~------~~-~~---~~~~~~~~~~~~g~~~~~s~L~I~  324 (600)
                      ..+..+.+..|+.++|.|.+.+..  ...+.|++  .|+.+.      .. ..   .....+..+..+. ......|+|.
T Consensus         6 Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~-~~~~~~L~I~   84 (120)
T d1ypzf1           6 QPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNP-SASTSILTIY   84 (120)
T ss_dssp             CSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECC-TTTEEEEEEC
T ss_pred             cCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccc-cccccccccc
Confidence            345567788899999999886543  34689998  333211      00 00   0111233332221 1234579999


Q ss_pred             cCCCCCCeEEEEEEecC
Q psy1672         325 NAQESDSGRFYCVAENR  341 (600)
Q Consensus       325 ~v~~~d~G~Y~C~a~N~  341 (600)
                      +++.+|+|.|.|.+.-.
T Consensus        85 ~l~~~Dsa~YyCA~~~~  101 (120)
T d1ypzf1          85 SLEEEDEAIYYCSYGEG  101 (120)
T ss_dssp             SCCGGGCSEEEEEECCT
T ss_pred             ccccccceeEEEEEcCC
Confidence            99999999999987543

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.52  E-value=0.0012  Score=53.21  Aligned_cols=78  Identities=19%  Similarity=0.302  Sum_probs=47.6

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEEc--Ceecc---CC-c--ccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLL---NN-T--AFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~---~~-~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      ..|..+.+..|+.++|.|.... ....+.|++.  ++.+.   .. .  ......+......   .....|.|.+++.+|
T Consensus         5 QsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~---~~~~~L~I~~~~~~D   80 (104)
T d1yqvl1           5 QSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGS---GTSYSLTISSMETED   80 (104)
T ss_dssp             EESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE---TTEEEEEESSCCGGG
T ss_pred             CcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecC---CCEEEEEecccCccc
Confidence            3467788999999999998753 3456899983  22110   00 0  0000111111111   124579999999999


Q ss_pred             CeEEEEEEec
Q psy1672         331 SGRFYCVAEN  340 (600)
Q Consensus       331 ~G~Y~C~a~N  340 (600)
                      +|.|.|.+..
T Consensus        81 sa~YyCa~~~   90 (104)
T d1yqvl1          81 AATYYCQQWG   90 (104)
T ss_dssp             CEEEEEEECS
T ss_pred             CCeEEEEecC
Confidence            9999997643

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0025  Score=51.00  Aligned_cols=73  Identities=18%  Similarity=0.314  Sum_probs=48.0

Q ss_pred             cccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         269 SENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       269 G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      +..++|.|.+.|.-+  ..|.|.++|+.+......   .......+|.+...+.|.|..-.-.....|+|.|......
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t---~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~   94 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMET---TQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS   94 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE---CCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEe---cccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCcc
Confidence            457899999997643  379999999876543210   0111234566777788888755433445899999986543

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.51  E-value=0.0016  Score=53.89  Aligned_cols=84  Identities=17%  Similarity=0.252  Sum_probs=52.4

Q ss_pred             cccccccccccccccceeeeEeecCC--CCeeEEEE--cCeecc----CCcc--cCccceEEEeeCCceeeeeeEEEecC
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIP--PAAISWYW--NGRLLL----NNTA--FSSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P--~p~i~W~~--~g~~l~----~~~~--~~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      +...+..+.+..|+.++|.|...+..  ...+.|++  .|+.+.    ....  .....+.....+. ..+...|.|.++
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~-~~~~~~L~i~~~   82 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDI-AKNLAVLKILAP   82 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEG-GGTEEEEEESSC
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccc-cccceecccccc
Confidence            44556677888999999999987654  34689998  333211    1000  0011223222211 123568999999


Q ss_pred             CCCCCeEEEEEEecC
Q psy1672         327 QESDSGRFYCVAENR  341 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N~  341 (600)
                      +.+|+|.|.|.....
T Consensus        83 ~~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          83 SERDEGSYYCACDTL   97 (120)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             cccCCceeecCcccC
Confidence            999999999986553

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0026  Score=50.34  Aligned_cols=65  Identities=20%  Similarity=0.248  Sum_probs=45.0

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      -.+..|.+|+|+|+........+.|+++|......        ..  ..+   ......|.+++..|.|.|+|.....
T Consensus        14 ~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~--------~~--~~~---~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          14 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--------HQ--SGE---HPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--------EE--ECS---SSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CccCCCCeEEEEEeCCCCCceEEEEEECCcccceE--------Ec--CCC---cccEEEEeccccccCcEEEEEEEcC
Confidence            36788999999998744444578899987532211        11  111   1246889999999999999987643

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.46  E-value=0.0023  Score=52.34  Aligned_cols=80  Identities=20%  Similarity=0.344  Sum_probs=49.4

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEE--cCeecc------CCcc--c-CccceEEEeeCCceeeeeeEEEecCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLL------NNTA--F-SSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~------~~~~--~-~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      ..+..+.+.+|+.++|.|... .....+.|++  .++.+.      ....  . ....+.......  .....|.|.+++
T Consensus         4 QsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~   80 (114)
T d1ogae1           4 QSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREK--KESFPLTVTSAQ   80 (114)
T ss_dssp             CSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSS--TTBCCEEECSCC
T ss_pred             EcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEccc--CCeEEEEECcCC
Confidence            346678889999999999975 3456899998  332111      0000  0 000111111111  124579999999


Q ss_pred             CCCCeEEEEEEecC
Q psy1672         328 ESDSGRFYCVAENR  341 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~  341 (600)
                      .+|+|.|.|.+...
T Consensus        81 ~~DSa~YyCa~~~~   94 (114)
T d1ogae1          81 KNPTAFYLCASSSR   94 (114)
T ss_dssp             SCCCEEEEEEEESS
T ss_pred             cCCceeEEEeeccC
Confidence            99999999987644

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0038  Score=49.70  Aligned_cols=70  Identities=11%  Similarity=0.180  Sum_probs=48.2

Q ss_pred             ccccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         266 AVSSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      +..|+.++|.|.+.|.-+.  .|+|.++|+.+....    ........+|++...+.|.+.   ..+.+.|+|.+....
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~----~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVE----HSDLSFSKDWSFYLLYYTEFT---PTEKDEYACRVNHVT   87 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCE----ECCCEECTTSCEEEEEEEEEC---CCSSCCEEEEEECTT
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCcc----ccceecCCCCcEEEEEEeEEC---CCCCCEEEEEEEeCC
Confidence            4568888999999986433  789999998875432    112334455666666677664   344568999999864

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0036  Score=50.22  Aligned_cols=76  Identities=14%  Similarity=0.241  Sum_probs=50.4

Q ss_pred             cccccceeeeEeecC-CCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         267 VSSENATVVCRVDSI-PPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      ..+..++|.|.+.+. |.. .|.|.++|+.+.....    .......++.+...+.|.|..-.-.....|+|.+......
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~----~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t   94 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLS----TASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHT   94 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGE----EEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCce----eeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEe
Confidence            345678899999974 443 6899999988764331    1222345666667788888765423334699999988644


Q ss_pred             ee
Q psy1672         345 AD  346 (600)
Q Consensus       345 ~~  346 (600)
                      .+
T Consensus        95 ~~   96 (104)
T d1o0va1          95 FE   96 (104)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.38  E-value=0.0027  Score=51.67  Aligned_cols=81  Identities=19%  Similarity=0.293  Sum_probs=49.2

Q ss_pred             ccccccccccccceeeeEeecCCCCeeEEEE--cCeecc------CCc--ccC-ccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLL------NNT--AFS-SYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~------~~~--~~~-~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      .|..+.+..|+.++|.|.... ....+.|++  .|+.+.      ...  ... ...+......  ......|.|.+++.
T Consensus         4 sP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~   80 (112)
T d2cdeb1           4 TPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRI--RTEHFPLTLESARP   80 (112)
T ss_dssp             ECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCS--SSSBCCEEBSSCCT
T ss_pred             CCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecC--CCCceEeeeccccc
Confidence            456678889999999998753 346799998  232110      000  000 0001111111  12345799999999


Q ss_pred             CCCeEEEEEEecCCC
Q psy1672         329 SDSGRFYCVAENRAG  343 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G  343 (600)
                      +|+|.|.|.+....+
T Consensus        81 ~Dsa~YyCA~~~~~~   95 (112)
T d2cdeb1          81 SHTSQYLCASSENIG   95 (112)
T ss_dssp             TTCSEEEEEEECSSS
T ss_pred             cccccEEEEEecCCC
Confidence            999999998875543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.37  E-value=0.0045  Score=50.34  Aligned_cols=78  Identities=18%  Similarity=0.348  Sum_probs=48.1

Q ss_pred             cccccccccccccceeeeEeecC-----CCCeeEEEE--cCeecc----CCc--ccCccceEEEeeCCceeeeeeEEEec
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSI-----PPAAISWYW--NGRLLL----NNT--AFSSYQRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~-----P~p~i~W~~--~g~~l~----~~~--~~~~~~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      ..+..+.+.+|+.|+|.|...+.     ....+.|++  .|+...    ...  ......+......+   ....|.|.+
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~---~~~~L~Is~   82 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSG---TAFTLRISR   82 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECS---SEEEEEESS
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCC---CEEEEEECC
Confidence            34567788899999999987653     234689998  332211    000  00111122222222   345799999


Q ss_pred             CCCCCCeEEEEEEe
Q psy1672         326 AQESDSGRFYCVAE  339 (600)
Q Consensus       326 v~~~d~G~Y~C~a~  339 (600)
                      ++.+|++.|.|...
T Consensus        83 ~~~~DsAvYyCa~~   96 (112)
T d1mjul1          83 VEAEDVGVYYCLQH   96 (112)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             ccccCCceEEEEeC
Confidence            99999999999543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.34  E-value=0.0043  Score=50.39  Aligned_cols=80  Identities=15%  Similarity=0.206  Sum_probs=49.0

Q ss_pred             cccccccccccccceeeeEeecC-C---CCeeEEEEc--Ceecc----CC--cccCccceEEEeeCCceeeeeeEEEecC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSI-P---PAAISWYWN--GRLLL----NN--TAFSSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~-P---~p~i~W~~~--g~~l~----~~--~~~~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      ..|..+.+..|+.|+|.|.+.+. .   ...+.|++.  |..+.    ..  .......+......+   ....|+|.++
T Consensus         6 QsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~---~~~~L~I~~~   82 (111)
T d2gsia1           6 QSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSG---TDFTLNIHPV   82 (111)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET---TEEEEEESSC
T ss_pred             eeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCC---Cchhcccccc
Confidence            34667888999999999987532 2   234899983  33211    00  000111222222222   2457999999


Q ss_pred             CCCCCeEEEEEEecC
Q psy1672         327 QESDSGRFYCVAENR  341 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N~  341 (600)
                      +.+|++.|.|.+...
T Consensus        83 ~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          83 EEEDAATYYCSHIRE   97 (111)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             cccCCceEEEEECCC
Confidence            999999999976543

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.31  E-value=0.0015  Score=53.14  Aligned_cols=79  Identities=19%  Similarity=0.265  Sum_probs=48.4

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEE--cCeeccCCc-------c-c--CccceEEEeeCCceeeeeeEEEecC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLNNT-------A-F--SSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~~~~-------~-~--~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      ..|..+.+..|+.++|.|...+ ....+.|++  .|+.+....       . .  ....+......+  .....|+|.++
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~L~i~~~   80 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTG--GTYSTLKVQPA   80 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTT--SSSEEEEESSC
T ss_pred             ECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCC--CCEEEEEECCc
Confidence            3466778899999999998654 345799998  333211000       0 0  001111111111  12357999999


Q ss_pred             CCCCCeEEEEEEec
Q psy1672         327 QESDSGRFYCVAEN  340 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N  340 (600)
                      +.+|+|.|.|.+..
T Consensus        81 ~~~Dsa~YyCa~~~   94 (111)
T d2esve1          81 ELEDSGVYFCASSQ   94 (111)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             ccCCCceEEEeeeC
Confidence            99999999998654

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.28  E-value=0.012  Score=46.52  Aligned_cols=69  Identities=12%  Similarity=0.217  Sum_probs=47.2

Q ss_pred             cccccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         267 VSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ..|+.++|.|.+.|.-+  ..|+|.++|..+....    ........++++...+.|.+..   .+.+.|+|.+....
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~----~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVE----MSDMSFSKDWSFYILAHTEFTP---TETDTYACRVKHDS   86 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCE----EEEEEECTTCCEEEEEEEEECC---CSSCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcE----ECceeECCCCCEEEEEEeEecC---cCCCEEEEEEEeCC
Confidence            46788899999998643  3789999998775432    2223344556666667777643   34457999998764

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0019  Score=51.75  Aligned_cols=74  Identities=18%  Similarity=0.298  Sum_probs=47.7

Q ss_pred             ccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         268 SSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      .+..++|.|.+.+..+.  .|.|.++|..+......   .......+|++...+.|.|....-.....|+|.+......
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~---~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~   94 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET---TTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST   94 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE---CCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEe---CCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECCcc
Confidence            35678999999985443  68999999877643211   1112334566677778877654322233699999987543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.27  E-value=0.0051  Score=50.13  Aligned_cols=79  Identities=16%  Similarity=0.324  Sum_probs=48.6

Q ss_pred             cccccccccccccceeeeEeecCC-----CCeeEEEE--cCeecc----CCc--ccCccceEEEeeCCceeeeeeEEEec
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIP-----PAAISWYW--NGRLLL----NNT--AFSSYQRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P-----~p~i~W~~--~g~~l~----~~~--~~~~~~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      ..|..+.+.+|+.|+|.|...+..     ...+.|++  .|+...    ...  ......+......   .....|+|.+
T Consensus         7 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~---~~~~~L~I~~   83 (113)
T d1n4xl_           7 QTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGS---GTDFTLKISR   83 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEC---SSEEEEEESS
T ss_pred             CcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeecc---CCcccCccCC
Confidence            346778889999999999876432     24689998  232111    000  0000111222111   1346899999


Q ss_pred             CCCCCCeEEEEEEec
Q psy1672         326 AQESDSGRFYCVAEN  340 (600)
Q Consensus       326 v~~~d~G~Y~C~a~N  340 (600)
                      ++.+|+|.|.|...+
T Consensus        84 ~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          84 VEAEDLGIYYCFQGS   98 (113)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             CCcccCEEEEEEECC
Confidence            999999999997554

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.26  E-value=0.0022  Score=52.25  Aligned_cols=79  Identities=20%  Similarity=0.294  Sum_probs=48.4

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEE--cCeeccC------Cc---cc-CccceEEEeeCCceeeeeeEEEecC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLN------NT---AF-SSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~~------~~---~~-~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      ..|..+.+.+|+.++|.|...+ ....+.|++  .++.+..      ..   .. ....+.......  .....|+|.++
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~~   80 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPE--GSVSTLKIQRT   80 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTT--SSCEEEEESSC
T ss_pred             ECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCc--CCEEEEEECCC
Confidence            3466778889999999998653 345799998  2321110      00   00 001112111111  23467999999


Q ss_pred             CCCCCeEEEEEEec
Q psy1672         327 QESDSGRFYCVAEN  340 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N  340 (600)
                      +.+|+|.|.|.+.-
T Consensus        81 ~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          81 QQEDSAVYLCASSL   94 (112)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             CcCCCEEEEEeeeC
Confidence            99999999998753

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0077  Score=49.22  Aligned_cols=80  Identities=18%  Similarity=0.229  Sum_probs=46.1

Q ss_pred             cccccccccccceeeeEeecCC-CC--eeEEEE--cCeeccCC-cccCccceEEEeeCC-----ceeeeeeEEEecCCCC
Q psy1672         261 SRYVEAVSSENATVVCRVDSIP-PA--AISWYW--NGRLLLNN-TAFSSYQRIFVIEQG-----EYERKSSLVLTNAQES  329 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P-~p--~i~W~~--~g~~l~~~-~~~~~~~~~~~~~~g-----~~~~~s~L~I~~v~~~  329 (600)
                      +..+.+..|+.++|.|...... ..  .+.|++  .|+.+... ..+....+.......     .......|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            5667788999999999976332 22  378998  33321100 000000000000000     0012458999999999


Q ss_pred             CCeEEEEEEec
Q psy1672         330 DSGRFYCVAEN  340 (600)
Q Consensus       330 d~G~Y~C~a~N  340 (600)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998764

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.22  E-value=0.0048  Score=50.19  Aligned_cols=78  Identities=15%  Similarity=0.301  Sum_probs=47.6

Q ss_pred             ccccccccccccceeeeEeecCC-----CCeeEEEE--cCeecc----CCc--ccCccceEEEeeCCceeeeeeEEEecC
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIP-----PAAISWYW--NGRLLL----NNT--AFSSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P-----~p~i~W~~--~g~~l~----~~~--~~~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      .|..+.+..|+.|+|.|++.+..     ..-+.|++  .|+.+.    ...  ......+......+   ....|.|.++
T Consensus         7 sP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~---~~~~L~I~~~   83 (112)
T d1ncwl1           7 SPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSG---TDFTLKISRV   83 (112)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET---TEEEEEESSC
T ss_pred             cCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCC---CEEEEEECcc
Confidence            36678889999999999875322     24589998  333211    000  00011122221111   3457999999


Q ss_pred             CCCCCeEEEEEEec
Q psy1672         327 QESDSGRFYCVAEN  340 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N  340 (600)
                      +.+|++.|.|...+
T Consensus        84 ~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          84 EAEDLGVYYCWQGT   97 (112)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             ccCcCEeEEEEcCC
Confidence            99999999996544

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.21  E-value=0.013  Score=46.22  Aligned_cols=73  Identities=26%  Similarity=0.386  Sum_probs=48.4

Q ss_pred             ccccccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         266 AVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      ...++.++|.|.+.|.-+  ..|+|.++|+.+......   ....-..++++...+.|.+..   .+...|+|.+.....
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~---~~~~~~~dgty~~~s~L~v~~---~~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAH---KTAQPNGDWTYQTLSHLALTP---SYGDTYTCVVEHIGA   87 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSB---CCCEECSSSCEEEEEEEEECC---CTTCCEEEEEECTTS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEe---CceEECCCCCEEEEEEeEcCC---CCCCEEEEEEEeCCC
Confidence            345678899999998633  478999999887544321   112233456666677777653   334479999998754


Q ss_pred             c
Q psy1672         344 I  344 (600)
Q Consensus       344 ~  344 (600)
                      .
T Consensus        88 ~   88 (98)
T d1hdmb1          88 P   88 (98)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.21  E-value=0.0047  Score=50.25  Aligned_cols=79  Identities=19%  Similarity=0.235  Sum_probs=48.8

Q ss_pred             ccccccccccccceeeeEeecCCCCeeEEEE--cCeeccCCcc---------cCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLNNTA---------FSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~~~~~---------~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      .+..+.+..|+.++|.|...+. ...+.|++  .++.+.....         .....+.......  .....|+|.+++.
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~   81 (113)
T d2ntsp1           5 TPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFS--NSRSEMNVSTLEL   81 (113)
T ss_dssp             ECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECT--TSCEEEEECSCCG
T ss_pred             CCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCc--CCeeEEEECCCCc
Confidence            3567788899999999987543 45799998  3332210000         0001111111111  1245799999999


Q ss_pred             CCCeEEEEEEecC
Q psy1672         329 SDSGRFYCVAENR  341 (600)
Q Consensus       329 ~d~G~Y~C~a~N~  341 (600)
                      +|+|.|.|.+...
T Consensus        82 ~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          82 GDSALYLCASSLA   94 (113)
T ss_dssp             GGCEEEEEEEESS
T ss_pred             ccceeeeeeeeCC
Confidence            9999999988754

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.003  Score=51.45  Aligned_cols=79  Identities=19%  Similarity=0.264  Sum_probs=47.3

Q ss_pred             ccccccccccceeeeEeec--CCCCeeEEEEc--Cee---cc--CCcccC----ccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         262 RYVEAVSSENATVVCRVDS--IPPAAISWYWN--GRL---LL--NNTAFS----SYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g--~P~p~i~W~~~--g~~---l~--~~~~~~----~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ....+.+|++++|.|...+  .....+.|++.  +..   +.  ......    ..+++.+..+. ......|+|.+++.
T Consensus         7 ~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~Lti~~l~~   85 (113)
T d1smoa_           7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYH-DHGLLRVRMVNLQV   85 (113)
T ss_dssp             EEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEET-TTTEEEEEECSCCG
T ss_pred             CcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEEC-CCCEEEEEEccCCc
Confidence            3466778999999998763  23457889982  321   11  000000    01233332221 12235799999999


Q ss_pred             CCCeEEEEEEecC
Q psy1672         329 SDSGRFYCVAENR  341 (600)
Q Consensus       329 ~d~G~Y~C~a~N~  341 (600)
                      +|+|.|.|.+...
T Consensus        86 ~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          86 EDSGLYQCVIYQP   98 (113)
T ss_dssp             GGCEEEEEEECCT
T ss_pred             ccCceEEEEEECC
Confidence            9999999987544

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0029  Score=50.94  Aligned_cols=75  Identities=20%  Similarity=0.287  Sum_probs=48.0

Q ss_pred             ccccceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         268 SSENATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       268 ~G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      .++.++|.|.+.+. |. ..|.|.++|+.+......  ........+|++...+.|.|..-.-.....|+|.+......
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~--~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   94 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHS--TTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS   94 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEE--ECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTST
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeE--eeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCC
Confidence            46678999999874 42 489999999876543210  01112234566667778887654433344799999986543

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.15  E-value=0.0044  Score=51.35  Aligned_cols=80  Identities=20%  Similarity=0.308  Sum_probs=49.5

Q ss_pred             ccccccccccccceeeeEeecCC--CCeeEEEE--cCeeccC-------Cc-cc---CccceEEEeeCCceeeeeeEEEe
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIP--PAAISWYW--NGRLLLN-------NT-AF---SSYQRIFVIEQGEYERKSSLVLT  324 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P--~p~i~W~~--~g~~l~~-------~~-~~---~~~~~~~~~~~g~~~~~s~L~I~  324 (600)
                      ++..+.+..|+.++|.|.+.|..  ...+.|++  .|+.+..       .. ..   ....|+.+..+. ......|.|.
T Consensus         7 p~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~-~~~~~~L~i~   85 (123)
T d1hxmb1           7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIP-ETSTSTLTIH   85 (123)
T ss_dssp             CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEET-TTTEEEEEEC
T ss_pred             CCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeec-cccceeeccc
Confidence            34456677899999999998654  34689998  3332110       00 00   011233333221 1124579999


Q ss_pred             cCCCCCCeEEEEEEec
Q psy1672         325 NAQESDSGRFYCVAEN  340 (600)
Q Consensus       325 ~v~~~d~G~Y~C~a~N  340 (600)
                      +++.+|+|.|.|.+..
T Consensus        86 ~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          86 NVEKQDIATYYCALWE  101 (123)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccccccCcEEEEeeeC
Confidence            9999999999998654

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=96.03  E-value=0.0093  Score=47.11  Aligned_cols=71  Identities=14%  Similarity=0.265  Sum_probs=42.4

Q ss_pred             cccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         267 VSSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      ..++..+|.|.+.|.-++  .|+|.++|..+......   ....-..+|++...+.|.+   ...+...|+|.+....-
T Consensus        16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~---~~~~~~~dgtf~~~s~l~~---~~~~~~~ytC~V~H~sl   88 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVS---TGLIQNGDWTFQTLVMLET---VPRSGEVYTCQVEHPSV   88 (98)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEE---CCCEECSSSCEEEEEEEEC---CCCTTCEEEEEEECTTC
T ss_pred             ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEE---CeEEeCCCcEEEEEEEeeE---cCCCCCEEEEEEEECCC
Confidence            446677899999975443  78999999877544211   1112234455555555554   34555689999998653

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.02  E-value=0.024  Score=45.03  Aligned_cols=71  Identities=17%  Similarity=0.231  Sum_probs=48.9

Q ss_pred             ccccccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         266 AVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      ++.|+..+|.|.+.|.-+  ..|.|.++|..+....    ........++++...+.|.+..-   +...|+|.+....-
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~----~~~~~~~~dgty~~~S~L~v~~~---~~~~ytC~V~H~~l   87 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFG----PTFVSAVDGLSFQAFSYLNFTPE---PSDIFSCIVTHEPD   87 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCC----CEEEEEETTTEEEEEEEEEECCC---TTCCEEEEEEETTT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcE----eceEEeCCCCcEEEEEEEEEecC---CCCEEEEEEEeCCC
Confidence            346778899999998544  3789999998764332    22334455677777778877543   33469999998743

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=95.99  E-value=0.0094  Score=47.38  Aligned_cols=70  Identities=17%  Similarity=0.388  Sum_probs=46.5

Q ss_pred             cccccceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         267 VSSENATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ..|+..+|.|.+.|. |. ..|.|.++|+.+......   ....-..++++...+.|.+..   .+...|+|.+....
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~---~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   88 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSE---TVFLPRDDHLFRKFHYLTFLP---STDDFYDCEVDHWG   88 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEE---CCCEECSSSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEe---CeEEECCCCcEEEEEEeEEcC---CCCCEEEEEEEECC
Confidence            456778899999976 43 389999999887643211   112223456666677787754   23347999999764

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.98  E-value=0.0057  Score=49.73  Aligned_cols=81  Identities=20%  Similarity=0.304  Sum_probs=49.6

Q ss_pred             ccccccccccccccceeeeEeecCCCCeeEEEE--cCeecc---C--Ccc----cCccceEEEeeCCceeeeeeEEEecC
Q psy1672         258 RMDSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLL---N--NTA----FSSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       258 ~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~---~--~~~----~~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      ...+..+.+.+|+.++|.|.... ....+.|++  .|+.+.   .  ...    .....+.......  .....|+|.++
T Consensus         4 ~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~   80 (113)
T d1j8he1           4 TQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREK--KERFSLILESA   80 (113)
T ss_dssp             EESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSS--TTBCEEEESSC
T ss_pred             EccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEecc--CcEeeeEeccC
Confidence            34567788889999999998653 346789998  332211   0  000    0000111111111  12357999999


Q ss_pred             CCCCCeEEEEEEecC
Q psy1672         327 QESDSGRFYCVAENR  341 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N~  341 (600)
                      +.+|+|.|.|.+...
T Consensus        81 ~~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          81 STNQTSMYLCASSST   95 (113)
T ss_dssp             CGGGCEEEEEEEECT
T ss_pred             ccCCcccEEeeEccC
Confidence            999999999998753

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.014  Score=47.10  Aligned_cols=80  Identities=19%  Similarity=0.368  Sum_probs=50.2

Q ss_pred             ccccccccccceeeeEeecC--CCCeeEEEE--cCee----ccCCcccC-----ccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         262 RYVEAVSSENATVVCRVDSI--PPAAISWYW--NGRL----LLNNTAFS-----SYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~--P~p~i~W~~--~g~~----l~~~~~~~-----~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ....+.+|+.++|.|...+.  ....+.|++  .++.    +.......     ..+|+.+..+ +......|+|.+++.
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d-~~~~~~~lti~~L~~   81 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHD-PSEAMLQVQMTDLQV   81 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEE-GGGTEEEEEECSCCG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEE-CCCCEEEEEECcccc
Confidence            34567899999999998753  445788998  3431    11111000     0123334322 122345799999999


Q ss_pred             CCCeEEEEEEecCC
Q psy1672         329 SDSGRFYCVAENRA  342 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~  342 (600)
                      +|+|.|.|......
T Consensus        82 eDsa~YyCa~~~~~   95 (110)
T d1u9ka_          82 TDSGLYRCVIYHPP   95 (110)
T ss_dssp             GGCEEEEEEEECTT
T ss_pred             CCCEEEEEEEeCCC
Confidence            99999999876544

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=95.92  E-value=0.01  Score=46.90  Aligned_cols=71  Identities=21%  Similarity=0.367  Sum_probs=46.5

Q ss_pred             ccccccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         266 AVSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...|...+|.|.+.|.-+  ..|+|.++|+.+......   ....-..++++...+.|.+..   .+...|+|.+....
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~---~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSE---TSFLSKSDHSFFKISYLTFLP---SADEIYDCKVEHWG   88 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEE---CCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEe---cceEECCCCCEEEEEEEEEcC---CCCCEEEEEEEeCC
Confidence            345778899999998643  378999999887643211   112233456666666777654   33447999999764

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0052  Score=50.38  Aligned_cols=80  Identities=16%  Similarity=0.179  Sum_probs=46.8

Q ss_pred             cccccccccccceeeeEeecCCCC---eeEEEEc--Ceecc-------CCcccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         261 SRYVEAVSSENATVVCRVDSIPPA---AISWYWN--GRLLL-------NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       261 ~~~~~v~~G~~v~L~C~v~g~P~p---~i~W~~~--g~~l~-------~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      +..+.+..|+.++|.|........   .+.|++.  ++.+.       .........+.... .........|.|.+++.
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICT-GTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCC-CCBCSSEEEEEECSCCG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEe-EcCCCCEEEEEeecccc
Confidence            556778899999999998633322   4889983  32110       00000000000000 00112346899999999


Q ss_pred             CCCeEEEEEEecC
Q psy1672         329 SDSGRFYCVAENR  341 (600)
Q Consensus       329 ~d~G~Y~C~a~N~  341 (600)
                      +|+|.|.|.+...
T Consensus        85 ~Dsa~YyCa~~~~   97 (118)
T d1i8lc_          85 MDTGLYICKVELM   97 (118)
T ss_dssp             GGCEEEEEEEEEE
T ss_pred             CCCEEEEEeEecc
Confidence            9999999987753

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.84  E-value=0.0051  Score=50.10  Aligned_cols=83  Identities=17%  Similarity=0.248  Sum_probs=49.6

Q ss_pred             cccccccccccccccceeeeEeecCCCCeeEEEEc--CeeccCCcccCc---------cceEEEeeCCceeeeeeEEEec
Q psy1672         257 IRMDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLLNNTAFSS---------YQRIFVIEQGEYERKSSLVLTN  325 (600)
Q Consensus       257 i~~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~~~~~~~~---------~~~~~~~~~g~~~~~s~L~I~~  325 (600)
                      +...+..+.+.+|+.++|.|..... ...+.|++.  |+.+........         ..+.......  .....|+|.+
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~   80 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFD--DYHSEMNMSA   80 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECT--TSCEEEECCS
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCC--CCeEEEEecc
Confidence            3445677888999999999986533 457999983  322110000000         0011110000  1235799999


Q ss_pred             CCCCCCeEEEEEEecCC
Q psy1672         326 AQESDSGRFYCVAENRA  342 (600)
Q Consensus       326 v~~~d~G~Y~C~a~N~~  342 (600)
                      ++.+|+|.|.|.+....
T Consensus        81 ~~~~Dsa~YyCa~~~~~   97 (113)
T d1nfdb1          81 LELEDSAMYFCASSLRW   97 (113)
T ss_dssp             CCGGGCEEECEEEESSS
T ss_pred             cCcCCceeEEEEeecCC
Confidence            99999999999876443

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.79  E-value=0.0055  Score=48.86  Aligned_cols=70  Identities=19%  Similarity=0.283  Sum_probs=47.3

Q ss_pred             cccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         269 SENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       269 G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...++|.|.+.+.-+  ..|+|.++|+.......    .......+|.+...+.|.|....-.....|+|.|....
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~----~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKN----TPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE----CCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEE----cccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            467899999997544  37899999987543221    11223456777777888887654334447999999864

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.77  E-value=0.0017  Score=56.86  Aligned_cols=109  Identities=17%  Similarity=0.102  Sum_probs=52.7

Q ss_pred             CCCCccEEEeec-ccCccc----CccccCCCCCccEEEccCCCCCCCCc----cccCCCCCCCEEEccCCCCCccCc---
Q psy1672          73 GLLNLQKLFLAR-CHIGQI----DSGALDGLTNLIEIDLSDNLLTSIPS----LTFQSVRFLRDLNLARNPISKIEK---  140 (600)
Q Consensus        73 ~l~~L~~L~L~~-n~l~~i----~~~~f~~l~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~Ls~N~i~~l~~---  140 (600)
                      +.++|++|+|++ +.++.-    ...++..+++|++|+|++|.++.-..    ..+.....|+.|++++|.+..-..   
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            445666666665 234221    12334556667777777776653211    123344566667766666543211   


Q ss_pred             -ccccCCCCcceeeC--CCCcCcccC----hhhhcCCCCCCEEEcCCC
Q psy1672         141 -GAFQFVPGLVKLDM--SESRLEHIS----PEAFTGAKSLESIKLNGN  181 (600)
Q Consensus       141 -~~~~~l~~L~~L~L--s~n~l~~i~----~~~~~~l~~L~~L~Ls~N  181 (600)
                       ..+...++|+.++|  +.|.+....    .+.+...+.|+.|+++.+
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence             23344455554333  344443311    223334555666665544

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.73  E-value=0.0082  Score=48.66  Aligned_cols=78  Identities=18%  Similarity=0.245  Sum_probs=47.6

Q ss_pred             ccccccccccccceeeeEeecCCCCeeEEEE--cCeeccCC------cc--cC-ccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         260 DSRYVEAVSSENATVVCRVDSIPPAAISWYW--NGRLLLNN------TA--FS-SYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       260 ~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~--~g~~l~~~------~~--~~-~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      .|..+.+..|+.++|.|.... ....+.|++  .|+.+.--      ..  .. ...+.......  .....|.|.+++.
T Consensus         5 ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~~   81 (112)
T d2bnub1           5 TPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRST--TEDFPLRLLSAAP   81 (112)
T ss_dssp             ECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSS--SSBCCEEESSCCG
T ss_pred             CCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCC--CCEEEEEECCCCH
Confidence            356677889999999998763 356799998  33322100      00  00 00011111111  1235799999999


Q ss_pred             CCCeEEEEEEec
Q psy1672         329 SDSGRFYCVAEN  340 (600)
Q Consensus       329 ~d~G~Y~C~a~N  340 (600)
                      +|+|.|.|.+..
T Consensus        82 ~DsavYyCA~~~   93 (112)
T d2bnub1          82 SQTSVYFCASSY   93 (112)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             HHCEEEEEeecC
Confidence            999999998764

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.70  E-value=0.03  Score=41.90  Aligned_cols=88  Identities=17%  Similarity=0.245  Sum_probs=56.2

Q ss_pred             ccccccccceeeeEee-cCCCCeeEEEE-cCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         264 VEAVSSENATVVCRVD-SIPPAAISWYW-NGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~-g~P~p~i~W~~-~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      -.+..|+...|.|.+. -.-.|+++|-+ +|....... .+......+.++++. .--.|.+..+..+|+|.|+|.|.-.
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le-~~pq~~TsW~e~~ni-s~FvLhF~pvl~sDnGsYrCSanf~   90 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLE-VGPQLYTSWEENRSV-PVFVLHFKPIHLSDNGSYSCSTNFN   90 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECC-CBTTEEEEEECSSSS-CEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEee-cCCccccchhhcCCe-eEEEEEeeeeeecCCCceEEecCCC
Confidence            4567899999999998 45678999988 554322211 111222334444422 2236788899999999999998765


Q ss_pred             CCc-eeEEEEEEE
Q psy1672         342 AGI-ADANFTLQV  353 (600)
Q Consensus       342 ~G~-~~~~v~L~V  353 (600)
                      .|. .+.+++++|
T Consensus        91 s~vieSHSvti~V  103 (104)
T d1xaua_          91 SQVINSHSVTIHV  103 (104)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             hhheecceEEEEe
Confidence            543 234455544

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0067  Score=48.30  Aligned_cols=72  Identities=19%  Similarity=0.311  Sum_probs=47.6

Q ss_pred             ccccceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         268 SSENATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       268 ~G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      .++.++|.|.+.|. |. ..|.|.++|.........    ......+|++...+.|.+..-.-...-.|+|.+....-
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~----~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTT----PPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEEC----CCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEc----ceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            45678999999975 43 378999999865533211    11234567777778888876432233369999998653

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.017  Score=45.11  Aligned_cols=70  Identities=17%  Similarity=0.359  Sum_probs=45.1

Q ss_pred             ccccceeeeEeecC-CCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         268 SSENATVVCRVDSI-PPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       268 ~G~~v~L~C~v~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      .++.++|.|.+.|. |.. .|.|.++|+.+.....  ......-..++.+...+.|.+..   .+...|+|.+....
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~--~~~~~~~~~~~t~~~~s~l~v~~---~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEF--EPKDVLPNGDGTYQGWITLAVPP---GEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGS--CCCEEEECTTSCEEEEEEEEECT---TCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcc--cccceEeCCCceEEEEEEEEECC---CCCCEEEEEEEeCC
Confidence            45678999999984 543 8999999988754321  12233333445555555666543   34557999999863

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.65  E-value=0.0018  Score=52.01  Aligned_cols=74  Identities=24%  Similarity=0.378  Sum_probs=47.5

Q ss_pred             cccceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCcee
Q psy1672         269 SENATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIAD  346 (600)
Q Consensus       269 G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~~  346 (600)
                      +..++|.|.+.+. |. ..|.|.++|+.+.......    .....++++...+.|.|..-.-.+...|+|.|........
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~----~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~~   95 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT----KPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVE   95 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC----CCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCC
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEec----cccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcEE
Confidence            5578999999974 43 3799999998876433111    1122345555566777765443334579999998765443

>d1ccza2 b.1.1.3 (A:94-171) CD2-binding domain of CD58, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD2-binding domain of CD58, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0059  Score=45.23  Aligned_cols=71  Identities=14%  Similarity=0.106  Sum_probs=52.3

Q ss_pred             cCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeee-eeEEEecCCCCCCeEEEEEEecCCCceeEEEE
Q psy1672         280 SIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERK-SSLVLTNAQESDSGRFYCVAENRAGIADANFT  350 (600)
Q Consensus       280 g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~-s~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~v~  350 (600)
                      ..+.|.|+|.+.++.+.+....+.+.+++++.++...+. ..-.+..-+....+.|+|+|.|.+........
T Consensus         2 ~Vs~P~Isw~C~N~tltCev~nGTd~~l~L~~n~t~~k~~~~~~i~y~wtn~~~~~~C~a~N~vS~~~~~~~   73 (78)
T d1ccza2           2 MVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEV   73 (78)
T ss_dssp             CCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEECSCCSSCEEEEEEETTEEEEEEEC
T ss_pred             CcCCCeeeEEecCcEEEEEEccCCCcEEEEEeCCeeeccccccEEEEEecCCCccEEEEEeceECccceeEE
Confidence            357899999998888888888888888988888765432 22234444566678999999999987665443

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=95.61  E-value=0.0067  Score=48.31  Aligned_cols=71  Identities=20%  Similarity=0.349  Sum_probs=46.4

Q ss_pred             ccccceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         268 SSENATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       268 ~G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      .+..++|.|.+.|. |. ..|+|.++|.........    ......+|++...+.|.|..-.-.....|+|.+....
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~----~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNT----EPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC----CCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEc----cceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46678999999974 43 479999998765432211    1123455667777888876554223346999999754

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.61  E-value=0.015  Score=47.26  Aligned_cols=76  Identities=18%  Similarity=0.320  Sum_probs=48.0

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeecc------CC--c--ccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL------NN--T--AFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~~--~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.      ..  .  ......|+.+..+ +..+...|+|.+++.+|
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D-~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQG-NAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEEC-SSTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecc-cCCcceecccccCCcCC
Confidence            35679999999999976543  578887  333221      00  0  0111234444433 22345689999999999


Q ss_pred             CeEEEEEEecC
Q psy1672         331 SGRFYCVAENR  341 (600)
Q Consensus       331 ~G~Y~C~a~N~  341 (600)
                      ++.|.|.+...
T Consensus        89 tA~YYCAr~~~   99 (119)
T d1kxvc_          89 TAMYYCKPSLR   99 (119)
T ss_dssp             CEEEEEEEEES
T ss_pred             cceEeeeeccc
Confidence            99999976544

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.017  Score=46.16  Aligned_cols=78  Identities=18%  Similarity=0.390  Sum_probs=50.2

Q ss_pred             ccccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCC-CCC-CeEEEEEEecCCC
Q psy1672         268 SSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ-ESD-SGRFYCVAENRAG  343 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~-~~d-~G~Y~C~a~N~~G  343 (600)
                      ....++|.|.+.|.-+  ..|+|..++.........  ..  ....+|.+...+.|.|.... ... ...|+|.|....+
T Consensus        20 ~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~--~~--~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~   95 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRG--FP--SVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNG   95 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEE--CC--CEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTC
T ss_pred             CCCceEEEEEEecccCCcEEEEEEECCccccCCEEc--ce--EEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCC
Confidence            4567899999997543  478999988765443211  11  12356777777788876554 222 2479999999877


Q ss_pred             ceeEEE
Q psy1672         344 IADANF  349 (600)
Q Consensus       344 ~~~~~v  349 (600)
                      .....+
T Consensus        96 ~~~~~v  101 (105)
T d1dn0b2          96 NKEKNV  101 (105)
T ss_dssp             CEEEEE
T ss_pred             CEEeEE
Confidence            666554

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.51  E-value=0.0078  Score=47.84  Aligned_cols=70  Identities=19%  Similarity=0.416  Sum_probs=46.7

Q ss_pred             cccceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         269 SENATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       269 G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...++|.|.+.+. |. ..|.|.++|..+.....    .......+|++...+.|.|..-.-.....|+|.+....
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~----~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKN----TQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEE----CCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEE----eeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4578999999975 43 47899999987654321    11223456777777888886543223347999999764

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.49  E-value=0.023  Score=44.00  Aligned_cols=66  Identities=20%  Similarity=0.289  Sum_probs=45.7

Q ss_pred             cccceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         269 SENATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       269 G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      +..++|.|.+.|. |. ..|+|.++|+.+....     .......++++...+.|.+..   .+...|+|.+....
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~-----~~~~~~~dgty~~~S~l~v~~---~~~~~ytC~V~H~s   82 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN-----CSTGPNGDGSFHAWSLLEVKR---GDEHHYQCQVEHEG   82 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCE-----EEEEECSSSCEEEEEEEEEET---TCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccC-----ccceecCCCCEeEEEEEEECC---CCCCEEEEEEEeCC
Confidence            4578999999985 43 3789999998765432     223334556777777887754   34457999999764

>d1hnfa2 b.1.1.3 (A:105-182) CD2, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD2, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.017  Score=42.40  Aligned_cols=73  Identities=19%  Similarity=0.223  Sum_probs=55.1

Q ss_pred             CCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCC-CCCCeEEEEEEecCCCceeEEEEEEEE
Q psy1672         282 PPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQ-ESDSGRFYCVAENRAGIADANFTLQVT  354 (600)
Q Consensus       282 P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~-~~d~G~Y~C~a~N~~G~~~~~v~L~V~  354 (600)
                      .+|.|.|.+..+.+.+....+...+++++.+++..+...-.|..-+ ....-.++|+|.|.+........+.+.
T Consensus         3 S~P~I~w~Ctn~tltCev~nGTd~~L~Ly~N~t~vk~~~~~l~Y~w~~~~~~~~~C~a~N~vs~~~~~~~i~Ct   76 (78)
T d1hnfa2           3 SKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCP   76 (78)
T ss_dssp             CCCEEEEETTTTEEEEECSSCSSCEEEEEESSCEEEEESSCEEEECCSCEEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             cCCeeeEEecCcEEEEEeccCCCcEEEEEECCEEecccceEEEEEccCCCCeeEEEEEcceecccceeEEecCC
Confidence            4789999998888888888888889999988876554333444444 344557999999999988877766653

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.45  E-value=0.018  Score=44.49  Aligned_cols=68  Identities=18%  Similarity=0.400  Sum_probs=45.8

Q ss_pred             ccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         268 SSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      .++.++|.|.+.|..+.  .|+|.++|+.+......   .......++++...+.|.+..-.   ...|+|.+...
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~---~~~~~~~~gt~~~~s~l~v~~~~---~~~ytC~V~H~   83 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMEL---VETRPAGDGTFQKWASVVVPLGK---EQYYTCHVYHQ   83 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEE---CCCEECSSSCEEEEEEEEEESST---TTTCEEEEECS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEE---CcEecCCCCcEEEEEEEEecCcC---CCEEEEEEEEC
Confidence            35679999999986554  67999999887643311   12234455666667778776432   23699999865

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.38  E-value=0.0088  Score=48.07  Aligned_cols=75  Identities=21%  Similarity=0.337  Sum_probs=46.7

Q ss_pred             ccccceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         268 SSENATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       268 ~G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      .+..++|.|.+.+. |. ..|.|.++|+.+......  ........+|++...+.|.|..-.-.....|+|.+......
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~--~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~   95 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN--SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST   95 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE--EECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEe--ccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            35678999999875 33 379999999877543210  00011123456666778877655422334799999976544

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.38  E-value=0.019  Score=46.91  Aligned_cols=76  Identities=18%  Similarity=0.401  Sum_probs=46.4

Q ss_pred             ccccccccceeeeEeecCCC----CeeEEEE--cCeeccCC--------ccc--CccceEEEeeCCceeeeeeEEEecCC
Q psy1672         264 VEAVSSENATVVCRVDSIPP----AAISWYW--NGRLLLNN--------TAF--SSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~----p~i~W~~--~g~~l~~~--------~~~--~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      ..+..|+.++|.|++.|...    ..+.|++  .|+.+.-.        ..+  ....|+.+..+. ......|+|.+++
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~-s~~~~~L~i~~l~   88 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDA-SKKQVVLTLTNLD   88 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCT-TTTEEEEEEESCC
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceeccc-ccceeeeeEEeee
Confidence            34567999999999876432    3578998  34321110        000  012234433321 1234679999999


Q ss_pred             CCCCeEEEEEEec
Q psy1672         328 ESDSGRFYCVAEN  340 (600)
Q Consensus       328 ~~d~G~Y~C~a~N  340 (600)
                      .+|++.|.|....
T Consensus        89 ~eDsAvYyCAr~~  101 (120)
T d2agjh1          89 PVDTATYYCARTS  101 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             eccceEEeeEecC
Confidence            9999999997544

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.039  Score=42.87  Aligned_cols=69  Identities=13%  Similarity=0.306  Sum_probs=44.6

Q ss_pred             ccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         268 SSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      .|+.++|.|.+.|.-+.  .|.|.++|+.+....    ........++++...+.+.+.   ..+...|+|.+....-
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~----~~~~~~~~~~t~~~~s~l~~~---~~~~~~ytC~V~H~sl   84 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPEL----RGDVLHNGNGTYQSWVVVAVP---PQDTAPYSCHVQHSSL   84 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSE----EEEEEETTTTEEEEEEEEEEC---TTCCSCEEEEEEETTC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcE----EeeeecCCCCeEEEEEEeEeC---CCCCCEEEEEEEECCC
Confidence            46789999999985443  789999998765332    112223344555555666654   3344579999997643

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=95.32  E-value=0.013  Score=46.03  Aligned_cols=68  Identities=12%  Similarity=0.292  Sum_probs=46.5

Q ss_pred             ccccceeeeEeecC-CCC-eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         268 SSENATVVCRVDSI-PPA-AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       268 ~G~~v~L~C~v~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      .++.++|.|.+.|. |.. .|.|.+++.......    ........+|++...+.|.+..-   +...|+|.+....
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~----~~~~~~~~dgty~~~S~L~v~~~---~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQ----LGDILPNANWTWYLRATLDVADG---EAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCE----ECCCEECTTSCEEEEEEEEEEGG---GCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCce----eCccEeCCCCcEEEEEEEEEeCc---cCCEEEEEEEeCC
Confidence            35678999999974 444 789999887664332    11223455677777788888753   3347999999764

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=95.27  E-value=0.025  Score=44.62  Aligned_cols=67  Identities=10%  Similarity=0.075  Sum_probs=41.9

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..+..|++|+|.|+.. .+...+.|+++|.......      .......    ......|..+...|.|.|+|.-...
T Consensus        15 ~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~------~~~~~~~----~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2          15 PTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRL------PAGPKVN----GTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             SEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEE------ECEEEET----TEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CcccCCCeEEEEECCC-CCccEEEEEECCCccccEE------EccccCC----ccEEEEEeccccccCEEEEEEeecC
Confidence            4567899999999875 3456788998874322110      0000011    1234567777788999999975533

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=95.25  E-value=0.032  Score=43.73  Aligned_cols=71  Identities=14%  Similarity=0.254  Sum_probs=42.7

Q ss_pred             cccccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCC
Q psy1672         267 VSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAG  343 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G  343 (600)
                      ..++.++|.|.+.|.-+  ..|.|.++|..+.....   ........++++...+.|.+.   ..+...|+|.+....-
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~---~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~sl   86 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVV---STPLIRNGDWTFQILVMLEMT---PQRGDVYTCHVEHPSL   86 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEE---ECCCEECSSSCEEEEEEEECC---SCTTCCEEEEEECTTC
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcE---eceeecCCCceEEEEEEeccC---CCCCCEEEEEEEeCCC
Confidence            34677889999997644  47899999987654321   111222345566666666663   3444589999998643

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.25  E-value=0.042  Score=44.17  Aligned_cols=82  Identities=17%  Similarity=0.268  Sum_probs=48.4

Q ss_pred             cccccccccccccceeeeEeecCCCCeeEEEEc--CeeccCCc-ccC-ccceEEEeeCCce----eeeeeEEEecCCCCC
Q psy1672         259 MDSRYVEAVSSENATVVCRVDSIPPAAISWYWN--GRLLLNNT-AFS-SYQRIFVIEQGEY----ERKSSLVLTNAQESD  330 (600)
Q Consensus       259 ~~~~~~~v~~G~~v~L~C~v~g~P~p~i~W~~~--g~~l~~~~-~~~-~~~~~~~~~~g~~----~~~s~L~I~~v~~~d  330 (600)
                      ..|..+.+.+|+.++|.|.........+.|++.  |+.+.-.. ... ...+..-...+.+    .....|.|.....+|
T Consensus         6 Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~d   85 (112)
T d1fo0b_           6 QNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQ   85 (112)
T ss_dssp             EECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCS
T ss_pred             eCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccC
Confidence            346677888999999999887655678999993  43221000 000 0000000000111    122468888889999


Q ss_pred             CeEEEEEEec
Q psy1672         331 SGRFYCVAEN  340 (600)
Q Consensus       331 ~G~Y~C~a~N  340 (600)
                      ++.|.|...-
T Consensus        86 sa~Y~Ca~~~   95 (112)
T d1fo0b_          86 GRTLYCTCSA   95 (112)
T ss_dssp             CEEEEEEEES
T ss_pred             CccEEEEEec
Confidence            9999998653

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.17  E-value=0.022  Score=45.11  Aligned_cols=74  Identities=16%  Similarity=0.229  Sum_probs=41.8

Q ss_pred             cccceeeeEeecCCCC--eeEEEE--cCeecc------CCc-----ccCccceEEEeeCCceeeeeeEEEecCCCCCCeE
Q psy1672         269 SENATVVCRVDSIPPA--AISWYW--NGRLLL------NNT-----AFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGR  333 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~~~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~  333 (600)
                      |+.++|.|++.|....  .+.|++  .|+-+.      ...     ......|+.+..+. ......|+|++++.+|++.
T Consensus         2 G~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~-s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           2 GASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDK-PSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC-----CEEEEEECCC---CCSE
T ss_pred             CCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccc-cccEEEeeeeeccccccEE
Confidence            7889999999986544  688987  444321      000     01112344444432 2345679999999999999


Q ss_pred             EEEEEecCCC
Q psy1672         334 FYCVAENRAG  343 (600)
Q Consensus       334 Y~C~a~N~~G  343 (600)
                      |.|......+
T Consensus        81 YYCAr~~~~~   90 (103)
T d1oari_          81 YYCARMWYYG   90 (103)
T ss_dssp             EEEEEEECSS
T ss_pred             EEeEEECCCC
Confidence            9998765544

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.024  Score=44.56  Aligned_cols=70  Identities=11%  Similarity=0.074  Sum_probs=40.8

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..+..|++|+|.|+.. .....+..+++|.......       ................|.+++..|.|.|+|.-...
T Consensus        13 ~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~-------~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          13 PVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQC-------LNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             SEEETTCCEEEEEECS-SCCSEEEEEEC------CE-------EEC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             CccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEe-------eeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            3577899999999875 3345677777664321110       00000000112357899999999999999986543

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0095  Score=46.58  Aligned_cols=62  Identities=19%  Similarity=0.298  Sum_probs=43.3

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      -.+..|++|+|.|+.. .+...+.|+++|....          ......   .....+.|.+++..|.|.|+|...
T Consensus        13 ~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~----------~~~~~~---~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          13 PEVISGEKVTFYCRLD-TATSMFLLLKEGRSSH----------VQRGYG---KVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             SEEETTCEEEEEEECS-SSCSEEEEEEESSSCE----------EEEEEC---SSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CcccCCCcEEEEECCC-CCCCEEEEEECCCccc----------eeecCC---CceeEEEecccChhcCceEEEEeE
Confidence            4577899999999875 3456788888774211          111111   124578999999999999999743

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.14  E-value=0.023  Score=45.85  Aligned_cols=75  Identities=19%  Similarity=0.334  Sum_probs=48.0

Q ss_pred             ccccccccceeeeEeecCCC--CeeEEEE--cCeeccC------C-c---ccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPP--AAISWYW--NGRLLLN------N-T---AFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~~------~-~---~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ..+..|+.++|.|++.|...  -.+.|++  .|+-+.-      . .   ......|+.+..+. ......|+|++++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~-s~n~~~L~~~sL~~e   88 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDT-SKSQVFLKMNSLQTE   88 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEET-TTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEeccc-ccceeeccccccccC
Confidence            34567999999999997664  3688988  4443211      0 0   01112344444332 233457999999999


Q ss_pred             CCeEEEEEEe
Q psy1672         330 DSGRFYCVAE  339 (600)
Q Consensus       330 d~G~Y~C~a~  339 (600)
                      |++.|.|...
T Consensus        89 DtAvYYCAr~   98 (117)
T d1c5db1          89 DTAIYFCTRE   98 (117)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEecc
Confidence            9999999654

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=94.99  E-value=0.038  Score=43.23  Aligned_cols=70  Identities=14%  Similarity=0.118  Sum_probs=45.0

Q ss_pred             cccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ...+..|.+|+|.|+.. .....+.++++|.......      .......+  .....+.|.+++..|.|.|+|.-...
T Consensus        10 ~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~------~~~~~~~~--~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          10 GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLR------LIGEHHDG--VSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEE------EECEEETT--EEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCcee------eeeeecCC--ceEEEEEEcccCcccCeEEEEEEEcC
Confidence            34577899999999975 3455788888764211000      00001111  23457899999999999999986543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=94.84  E-value=0.023  Score=45.86  Aligned_cols=76  Identities=21%  Similarity=0.288  Sum_probs=47.9

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeecc------C-Cc-c--cCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL------N-NT-A--FSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~-~~-~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.      . .. .  .....|+.+..+. ......|+|++++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~-s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNT-SKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             EECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEET-TTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeeccc-chhhhhcccccccccc
Confidence            45679999999999976544  678888  444221      1 00 0  0112334443321 2235679999999999


Q ss_pred             CeEEEEEEecC
Q psy1672         331 SGRFYCVAENR  341 (600)
Q Consensus       331 ~G~Y~C~a~N~  341 (600)
                      ++.|.|.....
T Consensus        90 tAvYyCAr~~~  100 (116)
T d7fabh1          90 TAVYYCARNLI  100 (116)
T ss_dssp             CEEEEEEEECS
T ss_pred             ceEEEeeeecC
Confidence            99999976544

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=94.82  E-value=0.04  Score=43.97  Aligned_cols=77  Identities=13%  Similarity=0.200  Sum_probs=48.7

Q ss_pred             cccccccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         263 YVEAVSSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      ..+...+..++|.|.+.+.-+.  .|.|.++|..+........    ....++++...+.|.+..-.-  ...|+|.+..
T Consensus        18 ~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~----~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H   91 (107)
T d1hxmb2          18 IAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGN----TMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRH   91 (107)
T ss_dssp             GGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECC----CEECSSSEEEEEEEEECTGGG--GSCEEEEEEE
T ss_pred             HHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccc----eecCCCeEEEEEEEEEecccC--CCeEEEEEEE
Confidence            3345567788999999975443  6899999887654332111    123456666667777754332  2269999998


Q ss_pred             CCCce
Q psy1672         341 RAGIA  345 (600)
Q Consensus       341 ~~G~~  345 (600)
                      .....
T Consensus        92 ~s~~~   96 (107)
T d1hxmb2          92 ENNKN   96 (107)
T ss_dssp             TTSGG
T ss_pred             CCCCC
Confidence            65443

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.80  E-value=0.015  Score=46.14  Aligned_cols=71  Identities=15%  Similarity=0.234  Sum_probs=46.2

Q ss_pred             ccccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCce
Q psy1672         268 SSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA  345 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~  345 (600)
                      .++.++|.|.+.|.-+  ..|.|..++..... .   ...  ....+|.+...+.|.|..-.- ..|.|+|.+....+..
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~-~---~~~--~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALSSGV-L---TVS--AVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSST   91 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTE-E---ECC--CEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGTE
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCcccc-e---eee--eecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCCe
Confidence            4678899999997433  37889766643211 1   111  133567777778888865543 3568999999876543

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.02  Score=45.81  Aligned_cols=75  Identities=23%  Similarity=0.331  Sum_probs=46.6

Q ss_pred             ccccceeeeEeecC-CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         268 SSENATVVCRVDSI-PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       268 ~G~~v~L~C~v~g~-P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      ....++|.|.+.+. |. ..|.|.++|...........  ......+|.+...+.|.|..-.-.....|+|.+......
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~--~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~   95 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESV--TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS   95 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEE--CCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEec--ccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            35678999999975 43 37999999987654321000  000112456667788888665422223799999986543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.78  E-value=0.0043  Score=54.10  Aligned_cols=113  Identities=12%  Similarity=0.160  Sum_probs=76.5

Q ss_pred             cCCCCCccEEEccC-CCCCCCC----ccccCCCCCCCEEEccCCCCCccCc----ccccCCCCcceeeCCCCcCcccC--
Q psy1672          95 LDGLTNLIEIDLSD-NLLTSIP----SLTFQSVRFLRDLNLARNPISKIEK----GAFQFVPGLVKLDMSESRLEHIS--  163 (600)
Q Consensus        95 f~~l~~L~~L~Ls~-N~l~~l~----~~~f~~l~~L~~L~Ls~N~i~~l~~----~~~~~l~~L~~L~Ls~n~l~~i~--  163 (600)
                      ..+.++|++|+|++ +.|+.-.    ...+...+.|++|+|++|.++....    ..+.....|+.+++++|.+....  
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            45678999999987 4565321    1134567889999999998865322    23456788999999999886532  


Q ss_pred             --hhhhcCCCCCCEEEcC--CCcCCCCC----cccccccccccEEEccCCcC
Q psy1672         164 --PEAFTGAKSLESIKLN--GNRLSHFP----VRSVEPLLKLMMIELHDNPW  207 (600)
Q Consensus       164 --~~~~~~l~~L~~L~Ls--~N~l~~l~----~~~~~~l~~L~~L~l~~N~~  207 (600)
                        ...+...++|+.++|+  +|.+..-.    ...+...+.|+.|++..+..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence              2455677888876664  56665421    23445667888898877653

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.012  Score=47.23  Aligned_cols=79  Identities=16%  Similarity=0.230  Sum_probs=48.6

Q ss_pred             ccccccccceeeeEeecC-CCC-eeEEEEcCeeccCCcccCccceE-EEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         264 VEAVSSENATVVCRVDSI-PPA-AISWYWNGRLLLNNTAFSSYQRI-FVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~-P~p-~i~W~~~g~~l~~~~~~~~~~~~-~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      .++..++.++|.|.+.+. |.. .|.|.++|+.+............ ....++.+...+.|.|..-.-.....|+|.|..
T Consensus        15 ~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H   94 (108)
T d1ow0a2          15 EELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGH   94 (108)
T ss_dssp             TTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEEC
T ss_pred             HHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEe
Confidence            345567889999999975 433 79999999877643211000000 011345566677787765442223479999987


Q ss_pred             CC
Q psy1672         341 RA  342 (600)
Q Consensus       341 ~~  342 (600)
                      ..
T Consensus        95 ~s   96 (108)
T d1ow0a2          95 EA   96 (108)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.77  E-value=0.026  Score=45.90  Aligned_cols=79  Identities=14%  Similarity=0.250  Sum_probs=49.5

Q ss_pred             ccccccccccceeeeEeecCCCC--eeEEEE--cCeecc------CC---cc--cCccceEEEeeCCceeeeeeEEEecC
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL------NN---TA--FSSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~~---~~--~~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      ....+..|+.++|.|++.|....  .+.|++  .|+-+.      ..   ..  .....|+.+..+. ......|+|+++
T Consensus         9 g~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~-s~ntvyL~~~~L   87 (122)
T d1vgeh1           9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDT-SATTAYMGLSSL   87 (122)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEET-TTTEEEEEECSC
T ss_pred             CCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccC-Ccceeeeccccc
Confidence            33456789999999999986643  578888  343221      00   00  0112344444332 123457999999


Q ss_pred             CCCCCeEEEEEEecC
Q psy1672         327 QESDSGRFYCVAENR  341 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N~  341 (600)
                      +.+|++.|.|.....
T Consensus        88 ~~eDtA~YYCAr~~~  102 (122)
T d1vgeh1          88 RPEDTAVYYCARDPY  102 (122)
T ss_dssp             CGGGCEEEEEEEETT
T ss_pred             CCCcceEEEEeecCC
Confidence            999999999976543

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=94.73  E-value=0.039  Score=44.99  Aligned_cols=72  Identities=19%  Similarity=0.234  Sum_probs=47.7

Q ss_pred             cccccceeeeEeecCCC----CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         267 VSSENATVVCRVDSIPP----AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~P~----p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ..+..++|.|.+.+..+    ..|+|..+|..+....    ........++.+...+.|.|..-.=.....|+|.|....
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~----~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQ----TQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTT----CBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCE----ECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence            45778999999987532    3678999998765433    112234566777777778765443222347999999865

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.69  E-value=0.03  Score=45.35  Aligned_cols=79  Identities=14%  Similarity=0.259  Sum_probs=50.5

Q ss_pred             ccccccccceeeeEeecCCCC--eeEEEE--cCeecc------CCc-----ccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL------NNT-----AFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~~~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      -.+..|+.++|.|++.|....  .+.|++  .|+-+.      ...     ......|+.+..+. ......|+|++++.
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~-s~nt~~L~~~sL~~   88 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDN-AKNSLYLQMSKVRS   88 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECS-SSCEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecC-ccceeeccccccCC
Confidence            345679999999999987654  578887  443221      110     01112344444432 23445799999999


Q ss_pred             CCCeEEEEEEecCCC
Q psy1672         329 SDSGRFYCVAENRAG  343 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G  343 (600)
                      +|++.|.|......+
T Consensus        89 eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          89 EDTALYYCARLHYYG  103 (118)
T ss_dssp             GGCEEEEEEEEETTT
T ss_pred             CcceEEEeeEecCCC
Confidence            999999998765443

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.69  E-value=0.023  Score=45.81  Aligned_cols=77  Identities=12%  Similarity=0.210  Sum_probs=48.5

Q ss_pred             ccccccccceeeeEeecCCC--CeeEEEE--cCeeccC------Cc-----ccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPP--AAISWYW--NGRLLLN------NT-----AFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~~------~~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..+..|+.++|.|++.|...  -.+.|++  .|+-+.-      ..     ......|+.+..+. ......|++++++.
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~-s~nt~yL~m~~L~~   88 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADN-SKNTAYLQMNSLRA   88 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEG-GGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEecc-ccceEEecccccCC
Confidence            34667999999999998664  3678887  3432211      00     01112344443332 23456799999999


Q ss_pred             CCCeEEEEEEecC
Q psy1672         329 SDSGRFYCVAENR  341 (600)
Q Consensus       329 ~d~G~Y~C~a~N~  341 (600)
                      +|++.|.|.....
T Consensus        89 eDTAvYYCAr~~~  101 (117)
T d1jpth1          89 EDTAVYYCARDTA  101 (117)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             CCceEEEEeecCC
Confidence            9999999976543

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.67  E-value=0.017  Score=46.72  Aligned_cols=76  Identities=18%  Similarity=0.305  Sum_probs=46.1

Q ss_pred             cccccccceeeeEeecCCC--CeeEEEE--cCeeccCCcccCc----------cceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP--AAISWYW--NGRLLLNNTAFSS----------YQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~~~~~~~~----------~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      .+..|+.++|.|++.|...  -.+.|++  .|+-+.-......          ..|+.+..+ +......|++++++.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D-~s~~tv~L~~~~L~~eD   89 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRD-TSKNQVFLKMNSLQTDD   89 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEE-GGGTEEECCEESCCCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccc-cccchhhcceeccCCCC
Confidence            3557999999999997654  3678988  4443211000000          112222221 11234578999999999


Q ss_pred             CeEEEEEEecC
Q psy1672         331 SGRFYCVAENR  341 (600)
Q Consensus       331 ~G~Y~C~a~N~  341 (600)
                      ++.|.|.....
T Consensus        90 TAvYyCAr~~~  100 (116)
T d1fn4b1          90 TGTYYCTRDLY  100 (116)
T ss_dssp             CEEEEEEEECS
T ss_pred             CEEEEEEeecC
Confidence            99999976543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.043  Score=42.88  Aligned_cols=67  Identities=13%  Similarity=0.187  Sum_probs=43.1

Q ss_pred             ccccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         264 VEAVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ..+..|++|+|.|+.. .+...+..+++|...........          .......+.|.+++..|.|.|+|.....
T Consensus        13 ~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~----------~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (96)
T d1ugna1          13 SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQ----------ELVKKGQFPIPSITWEHTGRYRCYYGSD   79 (96)
T ss_dssp             SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCH----------HHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccC----------CCCCEEEEEEEecCHHHCCeEEEEEeCC
Confidence            4567899999999974 34556777887642110000000          0011246889999999999999987543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=94.60  E-value=0.026  Score=45.88  Aligned_cols=74  Identities=23%  Similarity=0.275  Sum_probs=47.0

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeeccC------C--c--ccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLLN------N--T--AFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~~------~--~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.-      .  .  ......|+.+..+. ......|+|.+++.+|
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~-s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDT-SKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEET-TTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccC-chheeccccccccccc
Confidence            45679999999999986654  578988  4433211      0  0  00112344444331 1234579999999999


Q ss_pred             CeEEEEEEe
Q psy1672         331 SGRFYCVAE  339 (600)
Q Consensus       331 ~G~Y~C~a~  339 (600)
                      ++.|.|...
T Consensus        90 tA~YYCAr~   98 (120)
T d1dn0b1          90 TAVYYCARP   98 (120)
T ss_dssp             CEEEEEEEC
T ss_pred             ccEEEEEee
Confidence            999999543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=94.58  E-value=0.026  Score=46.16  Aligned_cols=76  Identities=12%  Similarity=0.248  Sum_probs=48.5

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeecc-------CCc--c--cCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL-------NNT--A--FSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~-------~~~--~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.       ...  .  .....|+.+..+. ......|++++++.+
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~-s~~t~yLq~~sL~~e   88 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDK-AKNMAYLRMDSVKSE   88 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEG-GGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEeccc-ccceeeceeccccCC
Confidence            35679999999999976544  678988  443221       110  0  0112344444332 234567999999999


Q ss_pred             CCeEEEEEEecC
Q psy1672         330 DSGRFYCVAENR  341 (600)
Q Consensus       330 d~G~Y~C~a~N~  341 (600)
                      |++.|.|.....
T Consensus        89 DtAvYYCAr~~~  100 (124)
T d1zvya1          89 DTAIYTCGATRK  100 (124)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cceEEEEeeccc
Confidence            999999986543

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.042  Score=43.46  Aligned_cols=75  Identities=13%  Similarity=0.253  Sum_probs=44.6

Q ss_pred             cccccccceeeeEeecCCCC----eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         265 EAVSSENATVVCRVDSIPPA----AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p----~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      .+..+..++|.|.+.|..+.    ++.|.+++.......    ........++++...+.|.|..-.-.....|+|.+.+
T Consensus        12 ~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~----~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H   87 (103)
T d1fp5a1          12 DLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHS----TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTH   87 (103)
T ss_dssp             HHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCC----EEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred             HHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccE----EcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEE
Confidence            34457788999999975433    455666665433221    1122334556666677777664432223479999998


Q ss_pred             CCC
Q psy1672         341 RAG  343 (600)
Q Consensus       341 ~~G  343 (600)
                      ..-
T Consensus        88 ~~l   90 (103)
T d1fp5a1          88 PHL   90 (103)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            643

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=94.45  E-value=0.027  Score=45.44  Aligned_cols=76  Identities=17%  Similarity=0.363  Sum_probs=48.1

Q ss_pred             ccccccccceeeeEeecCCCC--eeEEEE--cCeeccC-------Cc-c--cCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPA--AISWYW--NGRLLLN-------NT-A--FSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~~-------~~-~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      ..+..|+.++|.|++.|....  .+.|++  .|+-+.-       .. .  .....|+.+..+ +..+...|+|++++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D-~s~n~~~L~~~~l~~e   88 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKD-NSKSQVFLKMNSLHTD   88 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEE-GGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEecc-CCCceEEcceeeeeec
Confidence            345679999999999976554  577887  3442210       00 0  011234444432 1234457999999999


Q ss_pred             CCeEEEEEEec
Q psy1672         330 DSGRFYCVAEN  340 (600)
Q Consensus       330 d~G~Y~C~a~N  340 (600)
                      |++.|.|....
T Consensus        89 DTAvYYCAr~~   99 (116)
T d1a2yb_          89 DTARYYCARER   99 (116)
T ss_dssp             GCEEEEEEEES
T ss_pred             cceEEEEEEeC
Confidence            99999998654

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.38  E-value=0.02  Score=45.57  Aligned_cols=73  Identities=16%  Similarity=0.325  Sum_probs=44.8

Q ss_pred             ccccccceeeeEeecCC--CCeeEEEE--cCeecc------CC--c--ccCccceEEEeeCCceeeeeeEEEecCCCCCC
Q psy1672         266 AVSSENATVVCRVDSIP--PAAISWYW--NGRLLL------NN--T--AFSSYQRIFVIEQGEYERKSSLVLTNAQESDS  331 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P--~p~i~W~~--~g~~l~------~~--~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~  331 (600)
                      +..|+.++|.|++.|..  ...+.|++  .|+-+.      ..  .  ......|+.+..+. ..+...|+|.+++.+|+
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~-s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDN-AKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECT-TTCCEEEEECSCCGGGC
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCC-ceeEEEEeecCCCcccc
Confidence            45699999999998753  34678988  343221      11  0  01112344444432 23456799999999999


Q ss_pred             eEEEEEEe
Q psy1672         332 GRFYCVAE  339 (600)
Q Consensus       332 G~Y~C~a~  339 (600)
                      +.|.|...
T Consensus        84 AvYyCA~~   91 (107)
T d1sjva_          84 AVYYCYTH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeeeEecc
Confidence            99999653

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=94.35  E-value=0.039  Score=43.89  Aligned_cols=76  Identities=21%  Similarity=0.325  Sum_probs=48.5

Q ss_pred             ccccccccceeeeEeecCCCC--eeEEEE--cCeecc------CC-----c--ccCccceEEEeeCCceeeeeeEEEecC
Q psy1672         264 VEAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL------NN-----T--AFSSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~~-----~--~~~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      ..+..|+.++|.|++.|....  .+.|++  .|+-+.      ..     .  +.....|+.+..+. ...+..|+|+++
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~-s~~t~~L~i~sL   88 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDD-SQSMLYLQMNNL   88 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEET-TTTEEEEEECSC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceecccc-ccceeEecccCC
Confidence            346779999999999976543  688887  443221      10     0  01112345444432 223457999999


Q ss_pred             CCCCCeEEEEEEec
Q psy1672         327 QESDSGRFYCVAEN  340 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N  340 (600)
                      +.+|++.|.|....
T Consensus        89 ~~eDTAvYYCAr~~  102 (109)
T d2ck0h1          89 KTEDTGIYYCVRGR  102 (109)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CHhHCEEEEEEEcC
Confidence            99999999997543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=94.35  E-value=0.024  Score=46.66  Aligned_cols=76  Identities=17%  Similarity=0.313  Sum_probs=47.1

Q ss_pred             cccccccceeeeEeecCCC--CeeEEEE--cCeeccCC-----------c-----ccCccceEEEeeCCceeeeeeEEEe
Q psy1672         265 EAVSSENATVVCRVDSIPP--AAISWYW--NGRLLLNN-----------T-----AFSSYQRIFVIEQGEYERKSSLVLT  324 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~~~-----------~-----~~~~~~~~~~~~~g~~~~~s~L~I~  324 (600)
                      .+..|+.++|.|++.|...  -.+.|++  .|+-+.-.           .     ......|+.+..+. ......|+|+
T Consensus        11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~-s~~~~~L~i~   89 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDN-AKNTVNLQMN   89 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEG-GGTEEEEEEC
T ss_pred             eECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccC-CceEEEEeee
Confidence            3567999999999997654  3578987  33321100           0     00111234333321 2234579999


Q ss_pred             cCCCCCCeEEEEEEecC
Q psy1672         325 NAQESDSGRFYCVAENR  341 (600)
Q Consensus       325 ~v~~~d~G~Y~C~a~N~  341 (600)
                      +++.+|++.|.|.+...
T Consensus        90 ~l~~eDtAvYYCAr~~~  106 (127)
T d1i3ua_          90 SLKPEDTAVYYCAAKTT  106 (127)
T ss_dssp             SCCGGGCEEEEEEEESC
T ss_pred             cccccceeEEEEEEEee
Confidence            99999999999986543

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.0022  Score=51.22  Aligned_cols=85  Identities=14%  Similarity=0.209  Sum_probs=48.5

Q ss_pred             ccccccccc-ccccccccccceeeeEeecC--CC-CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         253 CKPEIRMDS-RYVEAVSSENATVVCRVDSI--PP-AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       253 C~p~i~~~~-~~~~v~~G~~v~L~C~v~g~--P~-p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      |.|.+...+ ....+..+..++|.|.+.+.  |. ..|.|..++.......      ......+|.+...+.|.|..-.-
T Consensus         1 ~~P~V~l~~Ps~~~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~------~~~~~~~gt~s~~S~L~v~~~~W   74 (101)
T d1ow0a1           1 CHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQG------PPERDLCGCYSVSSVLPGCAEPW   74 (101)
T ss_dssp             CCCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEEC------CCCCCSTTCCCEEEECTTTHHHH
T ss_pred             CCCEEEEECCCHHHHccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeec------ceEECCCCCEEEEEEEEEcHHHc
Confidence            677666553 33345678899999999985  33 3799988664221110      01123445554445554432221


Q ss_pred             CCCeEEEEEEecCCC
Q psy1672         329 SDSGRFYCVAENRAG  343 (600)
Q Consensus       329 ~d~G~Y~C~a~N~~G  343 (600)
                      .....|+|.|....-
T Consensus        75 ~~g~~ftC~V~H~~~   89 (101)
T d1ow0a1          75 NHGKTFTCTAAYPES   89 (101)
T ss_dssp             HHTCEEEEEECCSSC
T ss_pred             CCCCeEEEEEEeCCC
Confidence            123489999997643

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=94.29  E-value=0.053  Score=44.24  Aligned_cols=74  Identities=16%  Similarity=0.315  Sum_probs=45.2

Q ss_pred             cccccccceeeeEeecCCC----CeeEEEE--cCeecc------CC-c-c--cCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP----AAISWYW--NGRLLL------NN-T-A--FSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~----p~i~W~~--~g~~l~------~~-~-~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      .+..|+.++|.|.+.|...    -.+.|++  .|+.+.      .. . .  .....|+.+..+ +..+...|+|++++.
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D-~s~~~~~L~i~sl~~   89 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKD-TSNNQAFLNMMTVET   89 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEE-GGGTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEcccc-ccceeEEcceeeccc
Confidence            3566999999999987543    2467887  343221      00 0 0  001134444332 122345799999999


Q ss_pred             CCCeEEEEEEe
Q psy1672         329 SDSGRFYCVAE  339 (600)
Q Consensus       329 ~d~G~Y~C~a~  339 (600)
                      +|++.|.|...
T Consensus        90 eDsAvYyCAr~  100 (123)
T d1r0ah1          90 ADTAIYYCAQS  100 (123)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEeeccc
Confidence            99999999754

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=94.27  E-value=0.032  Score=45.19  Aligned_cols=75  Identities=20%  Similarity=0.290  Sum_probs=46.8

Q ss_pred             cccccccceeeeEeecCCCC---eeEEEE--cCeecc------CC-c-c--cCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA---AISWYW--NGRLLL------NN-T-A--FSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p---~i~W~~--~g~~l~------~~-~-~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|....   .+.|++  .|+-+.      .. . .  .....|+.+..+. ..+...|++.+++.+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~-s~nt~~L~~~sL~~e   89 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDT-SKNQFFLQLNSVTTE   89 (119)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEET-TTTEEEEEECSCCGG
T ss_pred             EECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEeccc-ccceeeccccccccC
Confidence            45679999999999987653   467877  444321      10 0 0  0111234443321 223457999999999


Q ss_pred             CCeEEEEEEec
Q psy1672         330 DSGRFYCVAEN  340 (600)
Q Consensus       330 d~G~Y~C~a~N  340 (600)
                      |+..|.|...-
T Consensus        90 DTAvYYCAr~~  100 (119)
T d1ncwh1          90 DTATYYCAGLL  100 (119)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CceEEEEeEec
Confidence            99999996543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.25  E-value=0.027  Score=45.50  Aligned_cols=77  Identities=14%  Similarity=0.283  Sum_probs=48.5

Q ss_pred             cccccccceeeeEeecCCC--CeeEEEE--cCeecc------CCc-----ccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP--AAISWYW--NGRLLL------NNT-----AFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~------~~~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|...  -.+.|++  .|+-+.      ...     ......|+.+..+. ......|+|++++.+
T Consensus        11 ~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~-s~~t~~L~i~~L~~e   89 (117)
T d1iqdb1          11 VKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADT-STNIAYMELSSLRSD   89 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET-TTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeeccc-ccceEEEeecccCcC
Confidence            3567999999999997654  3578988  444221      100     01112334443321 123457999999999


Q ss_pred             CCeEEEEEEecCC
Q psy1672         330 DSGRFYCVAENRA  342 (600)
Q Consensus       330 d~G~Y~C~a~N~~  342 (600)
                      |++.|.|......
T Consensus        90 DtAvYYCA~~~~~  102 (117)
T d1iqdb1          90 DTAVYYCAVPDPD  102 (117)
T ss_dssp             GCEEEEEEECSSS
T ss_pred             cceEEEEeEcCCC
Confidence            9999999876543

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.24  E-value=0.065  Score=43.22  Aligned_cols=76  Identities=16%  Similarity=0.253  Sum_probs=48.0

Q ss_pred             ccccccccceeeeEeecCCCC--eeEEEE--cCeecc-------CC-c---ccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL-------NN-T---AFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~-------~~-~---~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..+..|+.++|.|++.|....  .+.|++  .|+-+.       .. .   ......|+.+..+. ......|+|.+++.
T Consensus         9 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~-s~~t~~L~m~sL~~   87 (117)
T d1um5h1           9 VLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDK-SSNTAYLELSSLTS   87 (117)
T ss_dssp             EEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEET-TTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEecc-CceeEeecccccCC
Confidence            445679999999999976544  678988  443221       01 0   00112344443332 12345799999999


Q ss_pred             CCCeEEEEEEec
Q psy1672         329 SDSGRFYCVAEN  340 (600)
Q Consensus       329 ~d~G~Y~C~a~N  340 (600)
                      +|++.|.|....
T Consensus        88 eDtAvYYCAr~~   99 (117)
T d1um5h1          88 EDSAVYYCARSS   99 (117)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CcceEEEEeecc
Confidence            999999997543

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.049  Score=42.43  Aligned_cols=68  Identities=16%  Similarity=0.382  Sum_probs=42.9

Q ss_pred             cccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         269 SENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ++.++|.|.+.|.-+.  .|+|.++|+.+......   .......++.+...+.|.+..   .+...|+|.+....
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~---~~~~~~~~~~~~~~s~l~v~~---~~~~~ytC~V~H~~   84 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTEL---VETRPAGDRTFQKWAAVVVPS---GEEQRYTCHVQHEG   84 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEE---CCCEECSSSCEEEEEEEEEET---TCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCcee---ccEEcCCCCeEEEEEEEEEEc---CCCCEEEEEEEECc
Confidence            4578999999987655  56999999877643211   111122344455555665543   33357999999753

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.09  E-value=0.042  Score=44.67  Aligned_cols=75  Identities=13%  Similarity=0.266  Sum_probs=47.2

Q ss_pred             cccccccceeeeEeecCCC--CeeEEEE--cCeeccC------Cc---c--cCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP--AAISWYW--NGRLLLN------NT---A--FSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~~------~~---~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|...  ..+.|++  .|+.+.-      ..   .  .....|+.+..+. ......|+|.+++.+
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~-s~n~v~L~i~~l~~e   89 (120)
T d1pg7x1          11 LVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDR-SSTTAYIELVRLTSN   89 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET-TTTEEEEEECSCCGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeecc-CcceEEccccccCCC
Confidence            4567999999999987653  3678988  4443211      00   0  0011244443321 123457999999999


Q ss_pred             CCeEEEEEEec
Q psy1672         330 DSGRFYCVAEN  340 (600)
Q Consensus       330 d~G~Y~C~a~N  340 (600)
                      |++.|.|....
T Consensus        90 DtA~YYCAr~~  100 (120)
T d1pg7x1          90 DSAVYYCARED  100 (120)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEeeecC
Confidence            99999998653

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.04  Score=43.70  Aligned_cols=75  Identities=19%  Similarity=0.263  Sum_probs=47.4

Q ss_pred             ccccccceeeeEeecCCC----CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         266 AVSSENATVVCRVDSIPP----AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P~----p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ...+..++|.|.+.+..+    ..+.|.+++..+.....    .......+|.+...+.|.|..-.-.....|+|.+...
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~----~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~   90 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT----KPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNK   90 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEE----CCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECT
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEE----CCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeC
Confidence            445788999999987533    35667788877654331    1122345566666777877654322233799999987


Q ss_pred             CCc
Q psy1672         342 AGI  344 (600)
Q Consensus       342 ~G~  344 (600)
                      ...
T Consensus        91 ~l~   93 (105)
T d1l6xa1          91 ALP   93 (105)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            543

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.07  E-value=0.041  Score=43.52  Aligned_cols=72  Identities=15%  Similarity=0.199  Sum_probs=44.2

Q ss_pred             cccccceeeeEeecC-CC---CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         267 VSSENATVVCRVDSI-PP---AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~-P~---p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ..+..++|.|.+.+. |.   .+++|.++|..+.....    .......++.+...+.|.|..-.=...-.|+|.|....
T Consensus        14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~----~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQT----HAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEE----CCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             ccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEE----CCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            356778999999864 33   36789988876654321    11123345656666777665432112235999999864

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=94.06  E-value=0.036  Score=45.15  Aligned_cols=76  Identities=13%  Similarity=0.232  Sum_probs=48.0

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeecc-------CC--c--ccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL-------NN--T--AFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~-------~~--~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.       ..  .  ......|+.+..+ +......|+|++++.+
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD-~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRD-NPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEE-GGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEecc-CCccEeEeeeeeeccc
Confidence            35679999999999986543  578988  443221       11  0  0011234444332 1234467999999999


Q ss_pred             CCeEEEEEEecC
Q psy1672         330 DSGRFYCVAENR  341 (600)
Q Consensus       330 d~G~Y~C~a~N~  341 (600)
                      |++.|.|.....
T Consensus        90 DTAvYYCAr~~~  101 (122)
T d1bz7b1          90 DTAIYYCTRGGT  101 (122)
T ss_dssp             GCEEEEEEEECC
T ss_pred             CceEEEeecCCC
Confidence            999999976543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=94.06  E-value=0.053  Score=44.04  Aligned_cols=74  Identities=15%  Similarity=0.228  Sum_probs=46.3

Q ss_pred             cccccccceeeeEeecCCC--CeeEEEE--cCeecc------CC---cc--cCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP--AAISWYW--NGRLLL------NN---TA--FSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~------~~---~~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|...  -.+.|++  .|+.+.      ..   ..  .....|+.+..+. ......|+|.+++.+
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~-s~~~~~L~i~~L~~e   89 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEK-SSSTVYLEFSRLTSD   89 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEET-TTTEEEEEEEEECGG
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeeccc-ccceeeeeecccCcc
Confidence            4567999999999987543  3588988  444321      00   00  0112344443321 123457999999999


Q ss_pred             CCeEEEEEEe
Q psy1672         330 DSGRFYCVAE  339 (600)
Q Consensus       330 d~G~Y~C~a~  339 (600)
                      |++.|.|...
T Consensus        90 DsAvYYCA~~   99 (119)
T d1qnzh_          90 DSAVYYCAIH   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             ceeEEEEEEe
Confidence            9999999654

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.05  E-value=0.049  Score=45.05  Aligned_cols=76  Identities=16%  Similarity=0.353  Sum_probs=46.7

Q ss_pred             cccccccceeeeEeecCCC----CeeEEEE--cCeeccC------C-c---ccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP----AAISWYW--NGRLLLN------N-T---AFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~----p~i~W~~--~g~~l~~------~-~---~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      .+..|+.++|.|.+.|...    .-+.|++  .|+.+.-      . .   ......|+.+..+. ..+...|+|.+++.
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~-s~~~~~L~i~~l~~   89 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDT-SKNQVVLVMTRVSP   89 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEET-TTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccc-cccEEEcccccCCc
Confidence            4567999999999987543    2478987  3332210      0 0   00012344443321 12345799999999


Q ss_pred             CCCeEEEEEEecC
Q psy1672         329 SDSGRFYCVAENR  341 (600)
Q Consensus       329 ~d~G~Y~C~a~N~  341 (600)
                      +|++.|.|.....
T Consensus        90 eDtAvYYCAr~~~  102 (132)
T d1tjgh1          90 VDTATYFCAHRRG  102 (132)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             ccceEEEEEEecC
Confidence            9999999986643

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.04  E-value=0.041  Score=44.72  Aligned_cols=76  Identities=18%  Similarity=0.310  Sum_probs=48.0

Q ss_pred             cccccccceeeeEeecCCC--CeeEEEE--cCeecc------CCc-----ccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP--AAISWYW--NGRLLL------NNT-----AFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~------~~~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|...  -.+.|++  .|+-+.      ...     ......|+.+..+. ......|+|++++.+
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~-s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDN-SKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEET-TTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccc-cceeEEeeeeecccc
Confidence            3567999999999987654  3578987  444321      110     01112344444432 123457999999999


Q ss_pred             CCeEEEEEEecC
Q psy1672         330 DSGRFYCVAENR  341 (600)
Q Consensus       330 d~G~Y~C~a~N~  341 (600)
                      |++.|.|.....
T Consensus        90 DtAvYYCAr~~~  101 (121)
T d1ol0a_          90 DTAVYYCAREPR  101 (121)
T ss_dssp             GCEEEEEEECCS
T ss_pred             cceEEEEEEecC
Confidence            999999976543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=94.00  E-value=0.051  Score=44.63  Aligned_cols=77  Identities=17%  Similarity=0.209  Sum_probs=48.4

Q ss_pred             ccccccccceeeeEeecCCC--CeeEEEE--cCeeccCC------c-----ccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPP--AAISWYW--NGRLLLNN------T-----AFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~~~------~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..+..|+.++|.|++.|...  -.+.|++  .|+-+.-.      .     ......|+.+..+. ......|++++++.
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~-s~~tv~L~~~~L~~   87 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQ-ATSTAYMELTNLRS   87 (130)
T ss_dssp             EEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEET-TTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccC-CccEEEEEeeccCC
Confidence            34667999999999997654  3578887  44422110      0     00112344444332 12345799999999


Q ss_pred             CCCeEEEEEEecC
Q psy1672         329 SDSGRFYCVAENR  341 (600)
Q Consensus       329 ~d~G~Y~C~a~N~  341 (600)
                      +|++.|.|.....
T Consensus        88 eDtAvYyCAr~~~  100 (130)
T d1rhhb1          88 DDTAVYYCARDFG  100 (130)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             CCcEEEEEEeecC
Confidence            9999999986643

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.95  E-value=0.04  Score=44.45  Aligned_cols=74  Identities=15%  Similarity=0.168  Sum_probs=46.5

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeeccC------C---c--ccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLLN------N---T--AFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~~------~---~--~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.-      .   .  +.....|+.+..+. ......|+|++++.+
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~-s~~t~yLq~~~L~~e   89 (117)
T d1jnhb1          11 LARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADR-SSSIVYLQLNSLTSE   89 (117)
T ss_dssp             ECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEET-TTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccC-ccceeeecccccCCC
Confidence            35679999999999986554  578887  3432210      0   0  01112344444322 123457999999999


Q ss_pred             CCeEEEEEEe
Q psy1672         330 DSGRFYCVAE  339 (600)
Q Consensus       330 d~G~Y~C~a~  339 (600)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jnhb1          90 DSAVYSCSRG   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999654

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.93  E-value=0.038  Score=44.76  Aligned_cols=75  Identities=16%  Similarity=0.313  Sum_probs=47.6

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeecc-------CCc----ccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL-------NNT----AFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~-------~~~----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.       ...    +.....|+.+..+. ......|+|.+++.+
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~-s~nt~yLqm~sL~~e   89 (119)
T d1rz7h1          11 VKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADT-STDTGYLELSSLRSE   89 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEET-TTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEeccc-CceEEEeeeeccCcc
Confidence            35679999999999986644  688987  343221       000    00112344444332 233457999999999


Q ss_pred             CCeEEEEEEec
Q psy1672         330 DSGRFYCVAEN  340 (600)
Q Consensus       330 d~G~Y~C~a~N  340 (600)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (119)
T d1rz7h1          90 DTAVYYCAADP  100 (119)
T ss_dssp             GCEEEEEEECT
T ss_pred             cceEEEEeecC
Confidence            99999997654

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=93.91  E-value=0.064  Score=43.38  Aligned_cols=76  Identities=18%  Similarity=0.287  Sum_probs=47.8

Q ss_pred             cccccccceeeeEeecCCC--CeeEEEE--cCeecc------CCc-------ccCccceEEEeeCCceeeeeeEEEecCC
Q psy1672         265 EAVSSENATVVCRVDSIPP--AAISWYW--NGRLLL------NNT-------AFSSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~------~~~-------~~~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      .+..|+.++|.|++.|...  -.+.|++  .|+-+.      ...       +.....|+.+..+. ..+...|+|++++
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~-s~n~~~L~~~~L~   89 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDD-SKRRVYLQMNTLR   89 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEET-TTTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeeccc-ccceeccceeecc
Confidence            3567999999999987654  4678988  454321      100       00111344443321 1234579999999


Q ss_pred             CCCCeEEEEEEecC
Q psy1672         328 ESDSGRFYCVAENR  341 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~  341 (600)
                      .+|++.|.|.....
T Consensus        90 ~eDtAvYYCA~~~~  103 (120)
T d1dlfh_          90 AEDTGIYYCTGIYY  103 (120)
T ss_dssp             GGGCEEEEEEEEBT
T ss_pred             CCCceEEEeeEecC
Confidence            99999999975543

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=93.91  E-value=0.084  Score=40.87  Aligned_cols=69  Identities=25%  Similarity=0.467  Sum_probs=43.1

Q ss_pred             cccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         269 SENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       269 G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ++.++|.|.+.+.-+  -.|.|.++|..+......  .....-..++++...+.|.+..   .+...|+|.+....
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~--~~~~~~~~~~ty~~~s~l~v~~---~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQ--WGDVLPDGNGTYQTWVATRICQ---GEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSE--ECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEE--cCceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEECC
Confidence            456899999998543  378999999877643211  1111223345555566676653   33346999998753

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=93.87  E-value=0.048  Score=44.27  Aligned_cols=75  Identities=20%  Similarity=0.315  Sum_probs=46.6

Q ss_pred             cccccccceeeeEeecCCC--C--eeEEEE--cCeecc------C-Cc-cc--CccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP--A--AISWYW--NGRLLL------N-NT-AF--SSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~--p--~i~W~~--~g~~l~------~-~~-~~--~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      .+..|+.++|.|++.|...  .  .+.|++  .|+-+.      . .. .+  ....|+.+..+. ..+...|+|.+++.
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~-s~n~~~L~~~sL~~   89 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDT-SLNKFFIQLISVTN   89 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEET-TTTEEEEEESSCCG
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceecccc-ccceeecceeeeec
Confidence            4567999999999987643  2  477887  343321      0 00 00  011344443321 22345799999999


Q ss_pred             CCCeEEEEEEec
Q psy1672         329 SDSGRFYCVAEN  340 (600)
Q Consensus       329 ~d~G~Y~C~a~N  340 (600)
                      +|++.|.|....
T Consensus        90 eDtAvYYCAr~~  101 (120)
T d1ai1h1          90 EDTAMYYCSREN  101 (120)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cceeEEEEEecC
Confidence            999999997553

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=93.84  E-value=0.052  Score=42.55  Aligned_cols=71  Identities=14%  Similarity=0.177  Sum_probs=45.1

Q ss_pred             cccceeeeEeecCCCC--eeEEEEcCeeccCCcccC-ccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         269 SENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFS-SYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~-~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...++|.|.+.|.-+.  .|.|.++|..+....... .........+|++...+.|.+..-   +-..|+|.+....
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~---~~~~ytC~V~H~s   87 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGG---LEHVYSCRVKGIA   87 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTT---CGGGEEEEEEEGG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCC---CCCEEEEEEEeCC
Confidence            3478999999986554  678999887654322111 112233445677777778877543   3357999998643

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=93.73  E-value=0.052  Score=44.00  Aligned_cols=74  Identities=15%  Similarity=0.274  Sum_probs=47.0

Q ss_pred             cccccccceeeeEeecCCC--CeeEEEE--cCeecc------CC---cc--cCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP--AAISWYW--NGRLLL------NN---TA--FSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~------~~---~~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|...  ..+.|++  .|+-+.      ..   ..  .....|+.+..+ +......|+|++++.+
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD-~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          11 LVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRD-KGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECT-TSTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeec-CCceEEEEEeeecccc
Confidence            4567999999999987654  4578888  343221      00   00  011234444443 2234457999999999


Q ss_pred             CCeEEEEEEe
Q psy1672         330 DSGRFYCVAE  339 (600)
Q Consensus       330 d~G~Y~C~a~  339 (600)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d2p49b1          90 DTATYYCAAG   99 (121)
T ss_dssp             GCEEEEEEES
T ss_pred             ceeEEeeecc
Confidence            9999999764

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=93.71  E-value=0.074  Score=42.87  Aligned_cols=76  Identities=14%  Similarity=0.200  Sum_probs=47.1

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeecc------CCc--c--cCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL------NNT--A--FSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~~~--~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.      ...  .  .....|+.+..+. ......|+|.+++.+|
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~-s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDI-VRNILTLQMSRLRSED   89 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEET-TTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccc-cceeeeeccccccCCc
Confidence            35679999999999976543  678888  343221      100  0  0111233333321 1234579999999999


Q ss_pred             CeEEEEEEecC
Q psy1672         331 SGRFYCVAENR  341 (600)
Q Consensus       331 ~G~Y~C~a~N~  341 (600)
                      ++.|.|...-.
T Consensus        90 tA~YyCAr~~~  100 (118)
T d1lo4h1          90 TAIYYCARGTS  100 (118)
T ss_dssp             CEEEEEEEEET
T ss_pred             ceEEEecccCC
Confidence            99999976543

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.70  E-value=0.056  Score=43.98  Aligned_cols=76  Identities=12%  Similarity=0.167  Sum_probs=46.9

Q ss_pred             ccccccccceeeeEeecCCC--CeeEEEE--cCeecc------CCc---c--cCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPP--AAISWYW--NGRLLL------NNT---A--FSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~------~~~---~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..+..|+.++|.|++.|...  ..+.|++  .|+-+.      ...   .  .....|+.+..+. ......|+|++++.
T Consensus        10 ~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~-s~~t~~L~i~~L~~   88 (121)
T d1j05b_          10 ELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADT-SSNTAYLQLTSLTS   88 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEG-GGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeec-CCceeeecccccCc
Confidence            34677999999999987553  3678988  444221      000   0  0011233333221 12345799999999


Q ss_pred             CCCeEEEEEEec
Q psy1672         329 SDSGRFYCVAEN  340 (600)
Q Consensus       329 ~d~G~Y~C~a~N  340 (600)
                      +|++.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (121)
T d1j05b_          89 EDTAVYYCAPFG  100 (121)
T ss_dssp             GGCEEEEEEEEB
T ss_pred             CcceEEEeEeec
Confidence            999999997653

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.69  E-value=0.041  Score=45.09  Aligned_cols=76  Identities=16%  Similarity=0.239  Sum_probs=48.7

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeecc------CCc-----ccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL------NNT-----AFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~~~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.      ...     +.....|+.+..+. ......|+|++++.+
T Consensus        11 ~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~-s~~t~yL~~~sL~~e   89 (128)
T d2nxyd1          11 VKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADK-STSTVYLELRNLRSD   89 (128)
T ss_dssp             EECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEET-TTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecC-CCceEEeeeeecccc
Confidence            45679999999999987655  467876  343221      000     01112344444332 133567999999999


Q ss_pred             CCeEEEEEEecC
Q psy1672         330 DSGRFYCVAENR  341 (600)
Q Consensus       330 d~G~Y~C~a~N~  341 (600)
                      |++.|.|.....
T Consensus        90 DTA~YYCAr~~~  101 (128)
T d2nxyd1          90 DTAVYFCAGVYE  101 (128)
T ss_dssp             GCEEEEEEEEEC
T ss_pred             CceEEEEeEEec
Confidence            999999986643

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=93.65  E-value=0.062  Score=43.95  Aligned_cols=75  Identities=17%  Similarity=0.273  Sum_probs=46.2

Q ss_pred             cccccccceeeeEeecCCC---CeeEEEE--cCeeccCCccc----------CccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP---AAISWYW--NGRLLLNNTAF----------SSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~---p~i~W~~--~g~~l~~~~~~----------~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|.+.|...   -.+.|++  .|+-+.-....          ....|+.+..+ +..+...|+|.+++.+
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d-~s~nt~yL~l~~l~~e   89 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRD-TSKNQFFLKLNSVTTE   89 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEE-TTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecc-cccceeecceeccccc
Confidence            3567999999999998654   3578988  44432110000          00112222221 1134567999999999


Q ss_pred             CCeEEEEEEec
Q psy1672         330 DSGRFYCVAEN  340 (600)
Q Consensus       330 d~G~Y~C~a~N  340 (600)
                      |++.|.|....
T Consensus        90 DtAvYyCAr~~  100 (127)
T d3cx5j1          90 DTATYYCARSE  100 (127)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEeeeec
Confidence            99999998543

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=93.63  E-value=0.06  Score=44.06  Aligned_cols=76  Identities=16%  Similarity=0.346  Sum_probs=46.8

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeecc------CC---cc--cCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL------NN---TA--FSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~~---~~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.      ..   ..  .....|+.+..+. ......|+|++++.+
T Consensus        10 lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~-s~~~~~L~i~~l~~e   88 (126)
T d1rjca1          10 SVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDN-AKNTLYLQMNSLKPE   88 (126)
T ss_dssp             EECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC---CEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecC-CceEEEEEEeccCcc
Confidence            35579999999999875543  578888  443321      11   00  0112344444332 234567999999999


Q ss_pred             CCeEEEEEEecC
Q psy1672         330 DSGRFYCVAENR  341 (600)
Q Consensus       330 d~G~Y~C~a~N~  341 (600)
                      |++.|.|.....
T Consensus        89 DTAvYYCAr~~~  100 (126)
T d1rjca1          89 DTAMYYCAADTS  100 (126)
T ss_dssp             GCEEEEEEECCT
T ss_pred             cCceeEEEeecc
Confidence            999999986543

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.62  E-value=0.086  Score=41.50  Aligned_cols=72  Identities=15%  Similarity=0.322  Sum_probs=45.9

Q ss_pred             ccccceeeeEeecC-CCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCc
Q psy1672         268 SSENATVVCRVDSI-PPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGI  344 (600)
Q Consensus       268 ~G~~v~L~C~v~g~-P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~  344 (600)
                      .++.++|.|.+.+. |..  .+.|.+++..+....     .......+|++...+.|.|....-.....|+|.|......
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~-----~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVN-----FPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEE-----CCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeE-----eeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            46789999999985 553  456766665443211     1122345677777788888766543444799999876543

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=93.61  E-value=0.037  Score=44.70  Aligned_cols=74  Identities=14%  Similarity=0.244  Sum_probs=46.6

Q ss_pred             ccccccccceeeeEeecCCC--CeeEEEE--cCeecc------CCc---c--cCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPP--AAISWYW--NGRLLL------NNT---A--FSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~------~~~---~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..+..|+.++|.|++.|...  -.+.|++  .|+-+.      ...   .  .....|+.+..+. ......|+|++++.
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~-s~~tvyL~~~~L~~   88 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLET-SASTAYLQINSLKN   88 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEG-GGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecC-CceeEEeeeeeccc
Confidence            34577999999999997654  3688988  443221      110   0  0112344444332 23345799999999


Q ss_pred             CCCeEEEEEE
Q psy1672         329 SDSGRFYCVA  338 (600)
Q Consensus       329 ~d~G~Y~C~a  338 (600)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAr   98 (118)
T d1nlbh1          89 EDTATYFCAR   98 (118)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999953

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=93.59  E-value=0.063  Score=43.58  Aligned_cols=76  Identities=18%  Similarity=0.318  Sum_probs=48.7

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeecc------CCc-------ccCccceEEEeeCCceeeeeeEEEecCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL------NNT-------AFSSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~~~-------~~~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.      ...       ......|+.+..+. ..+...|+|.+++
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~-s~nt~~L~~~sL~   89 (122)
T d1q9rb1          11 LVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDN-SQSILYLQMNTLR   89 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEET-TTTEEEEEECSCC
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeec-ccceeccceeeec
Confidence            45679999999999976544  688987  444221      000       01112344444332 2334579999999


Q ss_pred             CCCCeEEEEEEecC
Q psy1672         328 ESDSGRFYCVAENR  341 (600)
Q Consensus       328 ~~d~G~Y~C~a~N~  341 (600)
                      .+|++.|.|.....
T Consensus        90 ~eDTAvYYCar~~~  103 (122)
T d1q9rb1          90 AEDSATYYCARDHD  103 (122)
T ss_dssp             GGGCEEEEEEECCC
T ss_pred             cCcceEEEEEecCC
Confidence            99999999986543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=93.57  E-value=0.09  Score=43.21  Aligned_cols=76  Identities=16%  Similarity=0.243  Sum_probs=48.6

Q ss_pred             cccccccceeeeEeecCCC--CeeEEEE--cCeecc------CCc-----ccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP--AAISWYW--NGRLLL------NNT-----AFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~------~~~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|...  -.+.|++  .|+-+.      ...     ......|+.+..+. ......|+|.+++.+
T Consensus        11 lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~-s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDN-AKNTLYLQMNSLKSE   89 (135)
T ss_dssp             EECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECT-TTCCEEEEEESCCSS
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccC-CCceeEecEeeeCcc
Confidence            4567999999999997654  3578887  443221      100     01112344444432 233457999999999


Q ss_pred             CCeEEEEEEecC
Q psy1672         330 DSGRFYCVAENR  341 (600)
Q Consensus       330 d~G~Y~C~a~N~  341 (600)
                      |++.|+|.....
T Consensus        90 DTAvYYCAr~~~  101 (135)
T d1ieha_          90 DTAVYYCAKYSG  101 (135)
T ss_dssp             SCEEEEEEEBSS
T ss_pred             cceeeEEEEecC
Confidence            999999976643

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=93.55  E-value=0.042  Score=44.89  Aligned_cols=76  Identities=17%  Similarity=0.289  Sum_probs=48.4

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeecc-------CCc----ccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL-------NNT----AFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~-------~~~----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.       ...    ......|+.+..+. ......|+|.+++.+
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~-s~nt~~L~~~~L~~e   89 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDN-AKNSLYLQMNSLRAE   89 (126)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEET-TTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccC-CCcEEEeeeeeeccC
Confidence            35679999999999986543  678988  443221       110    01112344444332 133457999999999


Q ss_pred             CCeEEEEEEecC
Q psy1672         330 DSGRFYCVAENR  341 (600)
Q Consensus       330 d~G~Y~C~a~N~  341 (600)
                      |++.|.|.....
T Consensus        90 DtavYYCAr~~~  101 (126)
T d1dfbh1          90 DMALYYCVKGRD  101 (126)
T ss_dssp             GCEEEEEEEEEC
T ss_pred             cceEEEEEeccC
Confidence            999999986544

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.53  E-value=0.05  Score=44.40  Aligned_cols=75  Identities=17%  Similarity=0.274  Sum_probs=47.6

Q ss_pred             cccccccceeeeEeecCCC--CeeEEEE--cCeecc------CCc-----ccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP--AAISWYW--NGRLLL------NNT-----AFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~------~~~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|...  ..+.|++  .|+-+.      ...     ......|+.+..+. ..+...|+|++++.+
T Consensus        11 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~-s~~t~~Lqm~sL~~e   89 (125)
T d1op3h1          11 LVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDD-LEDFVYLQMHKMRVE   89 (125)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEET-TTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccC-ccceEeeeeeccCCc
Confidence            3567899999999987554  3678988  443221      100     01112344444332 234567999999999


Q ss_pred             CCeEEEEEEec
Q psy1672         330 DSGRFYCVAEN  340 (600)
Q Consensus       330 d~G~Y~C~a~N  340 (600)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (125)
T d1op3h1          90 DTAIYYCARKG  100 (125)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceeEeEeecc
Confidence            99999998654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.53  E-value=0.038  Score=44.33  Aligned_cols=74  Identities=15%  Similarity=0.287  Sum_probs=46.7

Q ss_pred             ccccccccceeeeEeecCCC--CeeEEEE--cCeec------cCCc---c--cCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPP--AAISWYW--NGRLL------LNNT---A--FSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l------~~~~---~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      -.+..|+.++|.|++.|...  ..+.|++  .|+-+      ....   .  .....|+.+..+. ......|+|++++.
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~-s~nt~~L~~~~L~~   88 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDN-AQNNLYLQLNSLRS   88 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEET-TTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccC-ccceeeeeeeeecc
Confidence            34567999999999987654  3678988  34322      1110   0  0112344444321 12345799999999


Q ss_pred             CCCeEEEEEE
Q psy1672         329 SDSGRFYCVA  338 (600)
Q Consensus       329 ~d~G~Y~C~a  338 (600)
                      +|++.|.|..
T Consensus        89 eDtAvYYCA~   98 (114)
T d1indh1          89 EDTALYFCAS   98 (114)
T ss_dssp             GGCEEEEEEC
T ss_pred             CcccEEEECC
Confidence            9999999964

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.46  E-value=0.047  Score=44.18  Aligned_cols=73  Identities=12%  Similarity=0.199  Sum_probs=45.9

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeecc------CCc---c--cCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL------NNT---A--FSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~~~---~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.      ...   .  .....|+.+..+. ......|+|.+++.+
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~-s~nt~~L~~~sL~~e   89 (119)
T d1eapb1          11 LVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQ-SSSTAYMQLNSLTSE   89 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEG-GGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEccc-CcceEEeeeecccCC
Confidence            35679999999999986543  588988  443221      100   0  0011234343321 223457999999999


Q ss_pred             CCeEEEEEE
Q psy1672         330 DSGRFYCVA  338 (600)
Q Consensus       330 d~G~Y~C~a  338 (600)
                      |++.|.|..
T Consensus        90 DTAvYYCAr   98 (119)
T d1eapb1          90 DSAVYFCKR   98 (119)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEEE
Confidence            999999964

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.44  E-value=0.061  Score=44.33  Aligned_cols=78  Identities=22%  Similarity=0.307  Sum_probs=48.7

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeeccCC------c-----ccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLLNN------T-----AFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~~~------~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.-.      .     ......|+.+..+. ......|++++++.+
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~-s~~t~~L~~~~L~~e   88 (133)
T d1rzfh1          10 VNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADE-STRTVYLHLRGLRSD   88 (133)
T ss_dssp             EECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEET-TTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEecc-CcceeEEeeccCCCC
Confidence            46679999999999986544  577887  34322110      0     00112344443332 223457999999999


Q ss_pred             CCeEEEEEEecCCC
Q psy1672         330 DSGRFYCVAENRAG  343 (600)
Q Consensus       330 d~G~Y~C~a~N~~G  343 (600)
                      |++.|.|......+
T Consensus        89 DtA~YYCAr~~~~~  102 (133)
T d1rzfh1          89 DTAVYYCASNSIAG  102 (133)
T ss_dssp             GCEEEEEEEEECCC
T ss_pred             CCEEEEeeeccCCc
Confidence            99999997665443

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=93.42  E-value=0.044  Score=44.57  Aligned_cols=76  Identities=16%  Similarity=0.277  Sum_probs=48.5

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeec------cC-C--cc--cCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLL------LN-N--TA--FSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l------~~-~--~~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+      .. .  ..  .....|+.+..+. ......|+|++++.+
T Consensus        11 lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~-s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDN-AKNTLYLQMSSLKSE   89 (123)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEG-GGTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecC-cccccccceeeeccC
Confidence            45679999999999886643  578887  44321      11 1  00  1112344444332 233457999999999


Q ss_pred             CCeEEEEEEecC
Q psy1672         330 DSGRFYCVAENR  341 (600)
Q Consensus       330 d~G~Y~C~a~N~  341 (600)
                      |++.|.|.....
T Consensus        90 DtAvYYCAr~~~  101 (123)
T d1mqkh_          90 DTAMYYCVRHEY  101 (123)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cccceeEEecCC
Confidence            999999976643

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.18  Score=37.07  Aligned_cols=58  Identities=12%  Similarity=0.319  Sum_probs=38.6

Q ss_pred             cccccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         267 VSSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      ..|..+.|.|.....+.  .--.|.++|+.+........  .            -...|..  ..++|.|.|+-.+
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~--~------------tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ--K------------TEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCS--E------------EEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCC--c------------eEEEEec--CCCCceEEEEEcC
Confidence            45778899998875433  34579999999876542111  1            1334443  6789999999654

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.38  E-value=0.042  Score=44.29  Aligned_cols=73  Identities=15%  Similarity=0.226  Sum_probs=45.8

Q ss_pred             cccccccceeeeEeecCCC--CeeEEEE--cCeecc------CCc---c--cCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP--AAISWYW--NGRLLL------NNT---A--FSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~------~~~---~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|...  ..+.|++  .|+-+.      ...   .  .....|+.+..+. ......|+|.+++.+
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~-s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDK-SSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEET-TTTEEEEEECSCCGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeecc-CceeeEeeeeecCcC
Confidence            3667999999999987643  4688988  444321      010   0  0011244443321 123457999999999


Q ss_pred             CCeEEEEEE
Q psy1672         330 DSGRFYCVA  338 (600)
Q Consensus       330 d~G~Y~C~a  338 (600)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (115)
T d1f3dh1          90 DSAVYYCAN   98 (115)
T ss_dssp             GCEEEEEEE
T ss_pred             CcEEEEEec
Confidence            999999964

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.34  E-value=0.046  Score=43.92  Aligned_cols=76  Identities=13%  Similarity=0.218  Sum_probs=47.4

Q ss_pred             cccccccccceeeeEeecCCCC--eeEEEE--cCeecc-------CCc----ccCccceEEEeeCCceeeeeeEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL-------NNT----AFSSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~-------~~~----~~~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      ...+..|+.++|.|++.|....  .+.|++  .|+-+.       ...    ......|+.+..+. ......|++++++
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~-s~~tvyL~~~sL~   87 (116)
T d1mjuh1           9 AELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDT-SSSTAYMQLSSLT   87 (116)
T ss_dssp             EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET-TTTEEEEEECSCC
T ss_pred             CcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEeccc-ccceeEecccccC
Confidence            3456679999999999986644  578887  443221       100    00111234443321 1234579999999


Q ss_pred             CCCCeEEEEEEe
Q psy1672         328 ESDSGRFYCVAE  339 (600)
Q Consensus       328 ~~d~G~Y~C~a~  339 (600)
                      .+|++.|.|...
T Consensus        88 ~eDtAvYYCAr~   99 (116)
T d1mjuh1          88 SDDSAVYYCANK   99 (116)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCCceEEEEccc
Confidence            999999999643

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=93.24  E-value=0.054  Score=44.39  Aligned_cols=77  Identities=16%  Similarity=0.266  Sum_probs=48.6

Q ss_pred             cccccccceeeeEeecCCC--CeeEEEE--cCeecc------CCc-----ccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP--AAISWYW--NGRLLL------NNT-----AFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~------~~~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|...  ..+.|++  .|+-+.      ...     ......|+.+..+. ......|+|++++.+
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~-s~~t~yL~~~~L~~e   89 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRND-SKNTLFLQMDSLRPE   89 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEET-TTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccC-CccEEEeeeeeeeec
Confidence            3567999999999997654  3578887  343221      110     00112344444332 234567999999999


Q ss_pred             CCeEEEEEEecCC
Q psy1672         330 DSGRFYCVAENRA  342 (600)
Q Consensus       330 d~G~Y~C~a~N~~  342 (600)
                      |++.|.|......
T Consensus        90 DTA~YYCAr~~~~  102 (127)
T d2fb4h1          90 DTGVYFCARDGGH  102 (127)
T ss_dssp             GCEEEEEEEECSS
T ss_pred             ceeEEEEEEecCC
Confidence            9999999865443

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=93.22  E-value=0.065  Score=43.32  Aligned_cols=75  Identities=15%  Similarity=0.297  Sum_probs=47.4

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeecc------CCc---cc--CccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL------NNT---AF--SSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~~~---~~--~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.      ...   .+  ....|+.+..+. ..+...|++++++.+
T Consensus        11 ~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~-s~nt~~L~m~~L~~e   89 (120)
T d1ad9b1          11 VKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDT-STNTAYMELSSLRSE   89 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEET-TTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecC-cceEEeccccccCCC
Confidence            46679999999999976654  578887  343221      000   00  112344443321 223467999999999


Q ss_pred             CCeEEEEEEec
Q psy1672         330 DSGRFYCVAEN  340 (600)
Q Consensus       330 d~G~Y~C~a~N  340 (600)
                      |++.|.|...-
T Consensus        90 DTAvYYCAr~~  100 (120)
T d1ad9b1          90 DTAFYFCAREK  100 (120)
T ss_dssp             GCEEEEEEEEB
T ss_pred             cceEEEEEEcC
Confidence            99999997543

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.22  E-value=0.058  Score=44.11  Aligned_cols=75  Identities=24%  Similarity=0.298  Sum_probs=47.4

Q ss_pred             ccccccceeeeEeecCCC--CeeEEEE--cCeeccC------Cc-----ccCccceEEEeeCCceeeeeeEEEecCCCCC
Q psy1672         266 AVSSENATVVCRVDSIPP--AAISWYW--NGRLLLN------NT-----AFSSYQRIFVIEQGEYERKSSLVLTNAQESD  330 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~~------~~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d  330 (600)
                      +..|+.++|.|++.|...  -.+.|++  .|+-+.-      ..     ......|+.+..+. ......|+|++++.+|
T Consensus        12 ~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~-s~~t~yL~~~sL~~eD   90 (127)
T d2fx7h1          12 KRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADR-STSTAYLELNSLRPED   90 (127)
T ss_dssp             ECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEET-TTTEEEEEECSCCGGG
T ss_pred             ECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccC-ccceEeeeecccCccc
Confidence            557999999999997654  3578987  4432210      00     00112344444332 1234579999999999


Q ss_pred             CeEEEEEEecC
Q psy1672         331 SGRFYCVAENR  341 (600)
Q Consensus       331 ~G~Y~C~a~N~  341 (600)
                      ++.|.|.....
T Consensus        91 TavYYCAR~~~  101 (127)
T d2fx7h1          91 TAVYYCAREGT  101 (127)
T ss_dssp             CEEEEEEEEEE
T ss_pred             ceEEEEeeccc
Confidence            99999986643

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=93.16  E-value=0.062  Score=44.09  Aligned_cols=74  Identities=19%  Similarity=0.315  Sum_probs=44.6

Q ss_pred             cccccccceeeeEeecCCC----CeeEEEE--cCeecc-------CCc---ccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         265 EAVSSENATVVCRVDSIPP----AAISWYW--NGRLLL-------NNT---AFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~----p~i~W~~--~g~~l~-------~~~---~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      .+..|+.++|.|.+.|...    ..+.|++  .|+.+.       ...   ......|+.+..+. ......|+|.+++.
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~-s~~t~~L~i~~l~~   89 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDT-SSNQVFLKITSVDT   89 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEET-TTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEeccc-CCcEEEcceecccc
Confidence            3556999999999987543    2467886  333221       000   00012234333321 12345799999999


Q ss_pred             CCCeEEEEEEe
Q psy1672         329 SDSGRFYCVAE  339 (600)
Q Consensus       329 ~d~G~Y~C~a~  339 (600)
                      +|++.|.|...
T Consensus        90 eDtAvYyCAr~  100 (126)
T d1etzb1          90 SDTATYHCARR  100 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccceEEEEEe
Confidence            99999999854

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.12  E-value=0.052  Score=43.81  Aligned_cols=74  Identities=12%  Similarity=0.241  Sum_probs=46.7

Q ss_pred             ccccccccceeeeEeecCCCC--eeEEEE--cCeecc------CCc---cc--CccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL------NNT---AF--SSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~~~---~~--~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..+..|+.++|.|++.|....  .+.|++  .|+-+.      ...   .+  ....|+.+..+ +......|+|++++.
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D-~s~~t~~L~~~sL~~   88 (118)
T d2jelh1          10 ELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVD-KSSSTAYMELARLTS   88 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEE-GGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecc-cCcceEeeccccccc
Confidence            345679999999999987654  578887  444221      110   00  01134444332 123345799999999


Q ss_pred             CCCeEEEEEE
Q psy1672         329 SDSGRFYCVA  338 (600)
Q Consensus       329 ~d~G~Y~C~a  338 (600)
                      +|++.|.|..
T Consensus        89 eDTAvYYCAr   98 (118)
T d2jelh1          89 EDSAIYYCAR   98 (118)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceeeeEEE
Confidence            9999999954

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=93.01  E-value=0.056  Score=44.20  Aligned_cols=74  Identities=14%  Similarity=0.270  Sum_probs=47.2

Q ss_pred             ccccccccceeeeEeecCCCC--eeEEEE--cCeecc------CCc-----ccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL------NNT-----AFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~~~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..+..|+.++|.|++.|....  .+.|++  .|+-+.      ...     ......|+.+..+. ......|++++++.
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~-s~nt~yL~~~~L~~   88 (127)
T d1n0xh1          10 EVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADT-SANTAYMELRSLRS   88 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEG-GGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEeccc-CceEEEEEEEccCC
Confidence            446679999999999986544  578988  443321      000     00112344444321 23345799999999


Q ss_pred             CCCeEEEEEE
Q psy1672         329 SDSGRFYCVA  338 (600)
Q Consensus       329 ~d~G~Y~C~a  338 (600)
                      +|++.|.|..
T Consensus        89 eDtAvYYCAR   98 (127)
T d1n0xh1          89 ADTAVYYCAR   98 (127)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCceEEEEEe
Confidence            9999999964

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.95  E-value=0.06  Score=43.43  Aligned_cols=75  Identities=16%  Similarity=0.219  Sum_probs=46.4

Q ss_pred             cccccccccceeeeEeecCCC--CeeEEEE--cCeecc------CC---cc--cCccceEEEeeCCceeeeeeEEEecCC
Q psy1672         263 YVEAVSSENATVVCRVDSIPP--AAISWYW--NGRLLL------NN---TA--FSSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       263 ~~~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~------~~---~~--~~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      ...+..|+.++|.|++.|...  -.+.|++  .|+-+.      ..   ..  .....|..+..+. ......|+|.+++
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~-s~~~~~L~i~~L~   87 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVT-STTTAYMELSSLT   87 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEET-TTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEccc-CccEeEeeecccC
Confidence            344567999999999997554  3578887  444221      00   00  0112234443321 1234579999999


Q ss_pred             CCCCeEEEEEE
Q psy1672         328 ESDSGRFYCVA  338 (600)
Q Consensus       328 ~~d~G~Y~C~a  338 (600)
                      .+|++.|.|..
T Consensus        88 ~eDtAvYYCAr   98 (117)
T d1mfah1          88 SEDSAVYYCTR   98 (117)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEEec
Confidence            99999999964

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.87  E-value=0.073  Score=43.50  Aligned_cols=76  Identities=17%  Similarity=0.245  Sum_probs=48.1

Q ss_pred             ccccccccceeeeEeecCCCC--eeEEEE--cCeecc------CCc-----ccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL------NNT-----AFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~~~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..+..|+.++|.|++.|....  .+.|++  .|+-+.      ...     ......|+.+..+. ......|+|++++.
T Consensus        10 ~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~-s~n~vyL~l~sL~~   88 (125)
T d1rihh1          10 ELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADR-SSNTAFMYLNSLTS   88 (125)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEET-TTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEeccc-CcceEeeeeeccCc
Confidence            345679999999999976543  588887  444221      010     00112344443332 12345799999999


Q ss_pred             CCCeEEEEEEec
Q psy1672         329 SDSGRFYCVAEN  340 (600)
Q Consensus       329 ~d~G~Y~C~a~N  340 (600)
                      +|++.|.|....
T Consensus        89 eDtAvYYCAR~~  100 (125)
T d1rihh1          89 EDSAVYYCARES  100 (125)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEeeeC
Confidence            999999998654

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=92.84  E-value=0.039  Score=45.54  Aligned_cols=77  Identities=18%  Similarity=0.351  Sum_probs=47.5

Q ss_pred             ccccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCcc--ceEEEeeCCceeeeeeEEEecCCCCCCe-EEEEEEec
Q psy1672         266 AVSSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSY--QRIFVIEQGEYERKSSLVLTNAQESDSG-RFYCVAEN  340 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~--~~~~~~~~g~~~~~s~L~I~~v~~~d~G-~Y~C~a~N  340 (600)
                      ...+..++|.|.+.+.-+.  .|.|.++|+.+.........  .+.....++++...+.|.|....=.+.| .|+|.+..
T Consensus        17 ~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H   96 (127)
T d1ogae2          17 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQF   96 (127)
T ss_dssp             HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEE
T ss_pred             hccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEE
Confidence            3456778999999975433  68999999877543211000  0000123455666778887665434445 69999987


Q ss_pred             CC
Q psy1672         341 RA  342 (600)
Q Consensus       341 ~~  342 (600)
                      ..
T Consensus        97 ~~   98 (127)
T d1ogae2          97 YG   98 (127)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.11  Score=41.96  Aligned_cols=24  Identities=17%  Similarity=0.340  Sum_probs=20.5

Q ss_pred             eeeEEEecCCCCCCeEEEEEEecC
Q psy1672         318 KSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       318 ~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ...|+|.+++.+|+|.|.|.+...
T Consensus        76 ~~~L~I~~l~~~DsavYyCa~~~~   99 (118)
T d1yjdc1          76 SVTFYLQNLYVNQTDIYFCKIEVM   99 (118)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEEE
T ss_pred             eEEEEECCCCcccCeEEEEEEecc
Confidence            457999999999999999987643

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.68  E-value=0.073  Score=43.43  Aligned_cols=75  Identities=13%  Similarity=0.167  Sum_probs=47.3

Q ss_pred             ccccccccceeeeEeecCCCC--eeEEEE--cCeecc-------CCc----ccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL-------NNT----AFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~-------~~~----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..+..|+.++|.|++.|....  .+.|++  .|+-+.       ...    ......|+.+..+. ......|+|.+++.
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~-s~nt~yL~m~~L~~   87 (126)
T d1lmka1           9 ELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADT-SSNIAYMQLSSLTS   87 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEET-TTTEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecC-CccEEEeeecccCC
Confidence            345679999999999986554  578887  443221       100    00112344443321 12346799999999


Q ss_pred             CCCeEEEEEEe
Q psy1672         329 SDSGRFYCVAE  339 (600)
Q Consensus       329 ~d~G~Y~C~a~  339 (600)
                      +|++.|.|...
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1lmka1          88 EDSAVYYCARG   98 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeec
Confidence            99999999753

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=92.57  E-value=0.1  Score=42.80  Aligned_cols=74  Identities=15%  Similarity=0.231  Sum_probs=47.6

Q ss_pred             cccccccceeeeEeecCCC--CeeEEEE--cCeeccC---------C-c---ccCccceEEEeeCCceeeeeeEEEecCC
Q psy1672         265 EAVSSENATVVCRVDSIPP--AAISWYW--NGRLLLN---------N-T---AFSSYQRIFVIEQGEYERKSSLVLTNAQ  327 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~~---------~-~---~~~~~~~~~~~~~g~~~~~s~L~I~~v~  327 (600)
                      .+..|+.++|.|++.|...  ..+.|++  .|+-+.-         . .   +.....|+.+..+. ..+...|++++++
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~-s~nt~~Lq~~~L~   89 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDD-SKNTLYLQMNSLK   89 (131)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEG-GGTEEEEEECSCC
T ss_pred             eECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEeccc-ccceeecceeccc
Confidence            4567999999999997654  3678888  4442210         0 0   01112344443332 2345679999999


Q ss_pred             CCCCeEEEEEEe
Q psy1672         328 ESDSGRFYCVAE  339 (600)
Q Consensus       328 ~~d~G~Y~C~a~  339 (600)
                      .+|++.|.|...
T Consensus        90 ~eDTAvYYCAR~  101 (131)
T d3c2ah1          90 TEDTAVYSCTTD  101 (131)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCceEEEEecc
Confidence            999999999865

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.53  E-value=0.1  Score=40.99  Aligned_cols=71  Identities=20%  Similarity=0.304  Sum_probs=43.7

Q ss_pred             ccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCce
Q psy1672         268 SSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA  345 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~  345 (600)
                      .++.++|.|.+.|.-+.  .|.|..++...  ..  ....  ....+|.+...+.|.|..-.- +.+.|+|.|....+..
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~--~~--~~~~--~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSGSLSS--GV--HTFP--AVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPASST   91 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTBCT--TE--EECC--CEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGGTE
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcCCccC--Ce--Eecc--cccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCCCE
Confidence            46789999999975443  68896554321  11  0111  234567777778888776653 3467999999876543

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.53  E-value=0.084  Score=40.24  Aligned_cols=55  Identities=29%  Similarity=0.557  Sum_probs=38.8

Q ss_pred             ccccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCC-CCCeEEEEEEec
Q psy1672         266 AVSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE-SDSGRFYCVAEN  340 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~-~d~G~Y~C~a~N  340 (600)
                      ...|..|+|+|...+  ...|.|.+++..+....             +     ..|.+.+-.. +++|.|.|...+
T Consensus        11 SISGTtV~LTCP~~~--~~~I~Wkkn~~~i~g~~-------------~-----~~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          11 SISGTSVELTCPLDS--DENLKWEKNGQELPQKH-------------D-----KHLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             EEETTEEEEECSSCC--CTTCEEEETTEEECSCC-------------C-----SEEEEESCCTTTSCEEEEEECSS
T ss_pred             EEeCCEEEEECCCCC--CCceEEeeccccCCCCC-------------C-----cEEEEccccccccCcceEEecCC
Confidence            346899999998764  35799999887665322             1     1466677654 799999997443

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=92.50  E-value=0.073  Score=43.70  Aligned_cols=76  Identities=18%  Similarity=0.242  Sum_probs=47.4

Q ss_pred             ccccccccceeeeEeecCCC--CeeEEEE--cCeeccC------Cc-----ccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPP--AAISWYW--NGRLLLN------NT-----AFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~~------~~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..+..|+.++|.|++.|...  ..+.|++  .|+-+.-      ..     ......|+.+..+. ......|++++++.
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~-s~~t~yL~~~sL~~   88 (130)
T d1rzga1          10 EVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADE-STSTAYMELSSLRS   88 (130)
T ss_dssp             EEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEET-TTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEeccc-ccceEEeeeeecCC
Confidence            34567999999999987654  3688988  4432211      00     00112234443321 12345789999999


Q ss_pred             CCCeEEEEEEec
Q psy1672         329 SDSGRFYCVAEN  340 (600)
Q Consensus       329 ~d~G~Y~C~a~N  340 (600)
                      +|++.|.|....
T Consensus        89 eDtA~YYCAr~~  100 (130)
T d1rzga1          89 EDTAVFYCASPY  100 (130)
T ss_dssp             GGCEEEEEEECC
T ss_pred             CccEEEEEEEec
Confidence            999999998543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=92.50  E-value=0.088  Score=42.45  Aligned_cols=75  Identities=13%  Similarity=0.255  Sum_probs=47.1

Q ss_pred             ccccccccceeeeEeecCCC--CeeEEEE--cCeecc------CCc---c--cCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPP--AAISWYW--NGRLLL------NNT---A--FSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~--p~i~W~~--~g~~l~------~~~---~--~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..+..|+.++|.|++.|...  -.+.|++  .|+-+.      ...   .  .....|+.+..+ +......|.|++++.
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D-~s~~t~yL~i~~L~~   88 (118)
T d1ct8b1          10 VLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVD-TSSSTAYMQFSSLTT   88 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEE-GGGTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEec-CccceEEecccccCC
Confidence            44567999999999997654  3678887  444221      110   0  011223444332 122346799999999


Q ss_pred             CCCeEEEEEEe
Q psy1672         329 SDSGRFYCVAE  339 (600)
Q Consensus       329 ~d~G~Y~C~a~  339 (600)
                      +|++.|.|...
T Consensus        89 eDtAvYYCAr~   99 (118)
T d1ct8b1          89 EDSAIYYCARY   99 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeee
Confidence            99999999654

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=92.29  E-value=0.077  Score=43.09  Aligned_cols=75  Identities=13%  Similarity=0.199  Sum_probs=47.7

Q ss_pred             cccccccceeeeEeecCCCC--eeEEEE--cCeecc------CCc-----ccCccceEEEeeCCceeeeeeEEEecCCCC
Q psy1672         265 EAVSSENATVVCRVDSIPPA--AISWYW--NGRLLL------NNT-----AFSSYQRIFVIEQGEYERKSSLVLTNAQES  329 (600)
Q Consensus       265 ~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~------~~~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~  329 (600)
                      .+..|+.++|.|++.|....  .+.|++  .|+-+.      ...     ......|+.+..+. ......|++++++.+
T Consensus        11 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~-s~~t~~L~~~sL~~e   89 (124)
T d1yedb1          11 LVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADK-SSSTAYMQLSSLKSE   89 (124)
T ss_dssp             EECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEET-TTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccC-CcceEEecccccCCC
Confidence            45679999999999986654  578887  443221      100     00112344443331 223457999999999


Q ss_pred             CCeEEEEEEec
Q psy1672         330 DSGRFYCVAEN  340 (600)
Q Consensus       330 d~G~Y~C~a~N  340 (600)
                      |++.|.|....
T Consensus        90 DTAvYYCAR~~  100 (124)
T d1yedb1          90 DSAVYFCTRWG  100 (124)
T ss_dssp             GCEEEEEEECC
T ss_pred             cceEEEecccC
Confidence            99999997543

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.065  Score=42.30  Aligned_cols=72  Identities=15%  Similarity=0.285  Sum_probs=44.9

Q ss_pred             ccccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCce
Q psy1672         268 SSENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA  345 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~  345 (600)
                      .+..++|.|.+.+.-+.  .|.|..++.... ..   .. ......+|.+...+.|.|..-.- ....|+|.+....+..
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~-~~---t~-~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   92 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSG-VH---TF-PAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPSNT   92 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTT-EE---EC-CCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGGTE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCC-EE---EC-CCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCCCE
Confidence            45678999999975443  688966654321 11   11 11233556677778888875543 2346999999876654

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.21  E-value=0.09  Score=42.78  Aligned_cols=76  Identities=17%  Similarity=0.239  Sum_probs=47.2

Q ss_pred             ccccccccceeeeEeecCCCC--eeEEEE--cCeeccC------Cc-----ccCccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIPPA--AISWYW--NGRLLLN------NT-----AFSSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~~------~~-----~~~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      ..+..|+.++|.|++.|....  .+.|++  .|+-+.-      ..     ......|+.+..+. ......|++++++.
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~-s~~t~yL~~~~L~~   88 (124)
T d2b1hh1          10 EVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADR-STNTAHLQWSSLKP   88 (124)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEET-TTTEEEEEESSCCG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecC-CCcEEEEeeecccc
Confidence            345679999999999986643  578988  4432211      00     00112233333322 12345799999999


Q ss_pred             CCCeEEEEEEec
Q psy1672         329 SDSGRFYCVAEN  340 (600)
Q Consensus       329 ~d~G~Y~C~a~N  340 (600)
                      +|++.|.|....
T Consensus        89 eDTA~YYCAR~~  100 (124)
T d2b1hh1          89 SDTALYYCARLG  100 (124)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccceEEEEeecC
Confidence            999999996443

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=91.85  E-value=0.14  Score=41.35  Aligned_cols=76  Identities=17%  Similarity=0.228  Sum_probs=47.1

Q ss_pred             ccccccccceeeeEeecCCCC--eeEEEE--cCeeccC---------C--cc--cCccceEEEeeCCceeeeeeEEEecC
Q psy1672         264 VEAVSSENATVVCRVDSIPPA--AISWYW--NGRLLLN---------N--TA--FSSYQRIFVIEQGEYERKSSLVLTNA  326 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P~p--~i~W~~--~g~~l~~---------~--~~--~~~~~~~~~~~~g~~~~~s~L~I~~v  326 (600)
                      ..+..|+.++|.|++.|....  .+.|++  .|+-+.-         .  ..  .....|+.+..+. ..+...|+++++
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~-s~nt~yL~~~~L   88 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDD-SRNSIYLQMNRL   88 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECT-TTSEEEEEEESC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEcccc-ccceeeceeccc
Confidence            446789999999999986654  568888  4433210         0  00  0011222222221 233457999999


Q ss_pred             CCCCCeEEEEEEec
Q psy1672         327 QESDSGRFYCVAEN  340 (600)
Q Consensus       327 ~~~d~G~Y~C~a~N  340 (600)
                      +.+|++.|.|....
T Consensus        89 ~~eDTAvYYCAr~~  102 (121)
T d1nfdf1          89 RVDDTAIYYCTRAG  102 (121)
T ss_dssp             CGGGCEECEEEEEE
T ss_pred             CCCcceEEEEeccC
Confidence            99999999997653

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.29  Score=37.82  Aligned_cols=73  Identities=18%  Similarity=0.346  Sum_probs=47.4

Q ss_pred             ccccccccccceeeeEeecCCCCee-EEEEcCeecc-CCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEe
Q psy1672         262 RYVEAVSSENATVVCRVDSIPPAAI-SWYWNGRLLL-NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAE  339 (600)
Q Consensus       262 ~~~~v~~G~~v~L~C~v~g~P~p~i-~W~~~g~~l~-~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~  339 (600)
                      ..+.+.+|+++.+.|.+. .|..++ .|..++..+. ...      .+ .+..     .-.++|.+++..+.|.|.|.|.
T Consensus        13 ~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~------~v-~~Dp-----k~Gf~I~~~~~~~~g~y~C~a~   79 (95)
T d1fltx_          13 EIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGK------RI-IWDS-----RKGFIISNATYKEIGLLTCEAT   79 (95)
T ss_dssp             EEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSS------SE-EEET-----TTEEEESSCCGGGCEEEEEEEE
T ss_pred             CEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCC------EE-EECC-----CCCEEEeCCCcccCeEEEEEEE
Confidence            456788999999999997 555554 4554554332 211      11 1111     1257899999999999999998


Q ss_pred             cCCCceeEE
Q psy1672         340 NRAGIADAN  348 (600)
Q Consensus       340 N~~G~~~~~  348 (600)
                      -. |....+
T Consensus        80 ~~-g~~~~S   87 (95)
T d1fltx_          80 VN-GHLYKT   87 (95)
T ss_dssp             ET-TEEEEE
T ss_pred             EC-CEEEEE
Confidence            65 444333

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=90.98  E-value=0.28  Score=37.13  Aligned_cols=63  Identities=16%  Similarity=0.280  Sum_probs=39.9

Q ss_pred             cccceeeeEeecCCCC--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCC
Q psy1672         269 SENATVVCRVDSIPPA--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRA  342 (600)
Q Consensus       269 G~~v~L~C~v~g~P~p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~  342 (600)
                      ...++|.|.+.|.-+.  .|.|..+|.......      ......+|.+...+.+..   ..  ...|+|.+....
T Consensus        13 ~~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~------~~~~~~~gtys~~s~~~~---~~--~~~yTC~V~H~~   77 (86)
T d1hxma2          13 KNGTNVACLVKEFYPKDIRINLVSSKKITEFDP------AIVISPSGKYNAVKLGKY---ED--SNSVTCSVQHDN   77 (86)
T ss_dssp             EETTEEEEEEESCBSSCCEEEEECSSEEEECCC------EEEECTTSSEEEEEEEEE---TT--TTTCEEEEEETT
T ss_pred             CCCCEEEEEEeeEECCCCEEEEEECCEEccCcE------EeeeccCCcEEEEEEEec---CC--CCEEEEEEEECC
Confidence            4567999999986554  678999987665432      223445565554444433   33  336999999763

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.37  Score=36.76  Aligned_cols=66  Identities=14%  Similarity=0.295  Sum_probs=44.7

Q ss_pred             CCeeEEEEcC--eecc----CCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecCCCce--eEEEEEEEE
Q psy1672         283 PAAISWYWNG--RLLL----NNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENRAGIA--DANFTLQVT  354 (600)
Q Consensus       283 ~p~i~W~~~g--~~l~----~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~~G~~--~~~v~L~V~  354 (600)
                      ..+|.|.+.+  ..+.    ....|.......+..+|      +|.|..+...|+|+|.-.+-|.-|..  ++.+.|.|.
T Consensus        27 iddIrW~k~~~k~kiAefKk~~~~f~~~~~y~i~~nG------tLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          27 IDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG------TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             EEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS------CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             cceeEEEecCCCcceeeecccCCCCCCCceEEEccCC------cEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            3578999943  2221    11223333345555555      89999999999999999999999986  455666653

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.29  E-value=0.32  Score=36.47  Aligned_cols=62  Identities=23%  Similarity=0.381  Sum_probs=39.8

Q ss_pred             cccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCC-CCCeEEEEEEec
Q psy1672         267 VSSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQE-SDSGRFYCVAEN  340 (600)
Q Consensus       267 ~~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~-~d~G~Y~C~a~N  340 (600)
                      ..|..|+|+|.-  .....|.|.+++..+.....   +.......       -.|.+.+-.. +++|.|.|.+..
T Consensus         8 ISGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~---~~~~~~~~-------~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           8 ISGTTVILTCPQ--YPGSEILWQHNDKNIGGDED---DKNIGSDE-------DHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EETTEEEEECSS--CTTSCEEEEETTEEESSSCS---CTTEEEET-------TEEEETTCCHHHHCEEEEEEETT
T ss_pred             EeCCEEEEECCC--CCCCceeeeeccccccCCCc---cccccccc-------ceEEecccCccccCceEEEEcCC
Confidence            468999999963  24467999998876653221   11111111       1467777765 689999999864

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=89.10  E-value=0.07  Score=42.77  Aligned_cols=68  Identities=16%  Similarity=0.276  Sum_probs=39.4

Q ss_pred             ccccceeeeEeecCCC--CeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCe-EEEEEEecCC
Q psy1672         268 SSENATVVCRVDSIPP--AAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSG-RFYCVAENRA  342 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~--p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G-~Y~C~a~N~~  342 (600)
                      .+..++|.|.+.+.-+  ..|.|..++..-.  .    ........+|++...+.|.|..-. -+.| .|+|.|....
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~--~----~~~~~~~~dgtys~~S~L~v~~~~-W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEPSDY--K----NTPPVFDTDGSFFLYSRLKVDTDA-WNNGESFTCSVMHEA   96 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCTTTE--E----EEEEECCSSCCCEEEEEECCCSSC-CHHHHCCEEEEEETT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCCCCc--E----EcccEECCCCcEEEEEEEEECHHH-hCCCCEEEEEEEeCC
Confidence            3567899999998644  3788977653110  0    011122345656656666554332 2234 6999999864

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.79  E-value=0.14  Score=41.05  Aligned_cols=75  Identities=15%  Similarity=0.247  Sum_probs=46.5

Q ss_pred             ccccccccceeeeEeecCC--CCeeEEEE--cCeeccC------Cc---cc--CccceEEEeeCCceeeeeeEEEecCCC
Q psy1672         264 VEAVSSENATVVCRVDSIP--PAAISWYW--NGRLLLN------NT---AF--SSYQRIFVIEQGEYERKSSLVLTNAQE  328 (600)
Q Consensus       264 ~~v~~G~~v~L~C~v~g~P--~p~i~W~~--~g~~l~~------~~---~~--~~~~~~~~~~~g~~~~~s~L~I~~v~~  328 (600)
                      -.+..|+.++|.|.+.|..  .-.+.|++  .|+-+.-      ..   .+  ....|+.+..+. ......|++++++.
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~-s~~t~~L~~~sL~~   88 (117)
T d1b2wh1          10 GVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDK-SKNTLYLQMNSLRP   88 (117)
T ss_dssp             CEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCT-TTTEEEEEECSCCG
T ss_pred             ceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEecc-ccceEEeeeccccC
Confidence            3467899999999998643  34678887  3432211      00   00  001244444332 23345799999999


Q ss_pred             CCCeEEEEEEe
Q psy1672         329 SDSGRFYCVAE  339 (600)
Q Consensus       329 ~d~G~Y~C~a~  339 (600)
                      +|++.|.|...
T Consensus        89 eDTAvYYCAr~   99 (117)
T d1b2wh1          89 EDTAVYYCARG   99 (117)
T ss_dssp             GGCEEEECCEE
T ss_pred             CcceEEEEccc
Confidence            99999999643

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.46  E-value=1.8  Score=32.03  Aligned_cols=54  Identities=19%  Similarity=0.433  Sum_probs=37.1

Q ss_pred             ccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEec
Q psy1672         268 SSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAEN  340 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N  340 (600)
                      ....|.|.|...   ..+|.|++++..+.....                ....+.+......-.|.|.|.+..
T Consensus        21 ~dGsV~L~Cn~~---~k~i~W~kdg~~i~~~~~----------------~~ktlnLG~~~~DPRGiY~C~g~~   74 (86)
T d1jbja1          21 GDGSVLLTCGLT---DKTIKWLKDGSIISPLNA----------------TKNTWNLGNNAKDPRGTYQCQGAK   74 (86)
T ss_dssp             SSCEEEEECSSS---CSCEEEEETTEECCCSSC----------------CSSCCEEEETTSCCEEEEEEEESS
T ss_pred             cCCeEEEEeCCC---CcEEEEecCCceeccccc----------------ccceeecCCcccCCCcceEcCCCc
Confidence            456889999543   358999999876553220                012467777788888999997554

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.64  E-value=0.053  Score=43.89  Aligned_cols=73  Identities=15%  Similarity=0.203  Sum_probs=41.6

Q ss_pred             ccccccceeeeEeecCCC--C--eeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         266 AVSSENATVVCRVDSIPP--A--AISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       266 v~~G~~v~L~C~v~g~P~--p--~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      +..+..++|.|.+.+..+  .  ++.|..++.........    ......++++...+.|.|..-.-...-.|+|.|.+.
T Consensus        26 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~----~~~~~~~gt~s~~S~L~v~~~~W~~g~~ytC~V~H~  101 (116)
T d1igyb3          26 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQ----PREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSA  101 (116)
T ss_dssp             HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCC----CCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCS
T ss_pred             cccCCCcEEEEEEecEeCCCCEEEEEECcCCeEcCCcEEc----ccEECCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence            456888999999997543  2  44566666554322211    111223455555667766543211223699999976


Q ss_pred             C
Q psy1672         342 A  342 (600)
Q Consensus       342 ~  342 (600)
                      .
T Consensus       102 ~  102 (116)
T d1igyb3         102 A  102 (116)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.56  E-value=1.8  Score=31.65  Aligned_cols=55  Identities=18%  Similarity=0.432  Sum_probs=36.4

Q ss_pred             ccccceeeeEeecCCCCeeEEEEcCeeccCCcccCccceEEEeeCCceeeeeeEEEecCCCCCCeEEEEEEecC
Q psy1672         268 SSENATVVCRVDSIPPAAISWYWNGRLLLNNTAFSSYQRIFVIEQGEYERKSSLVLTNAQESDSGRFYCVAENR  341 (600)
Q Consensus       268 ~G~~v~L~C~v~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~g~~~~~s~L~I~~v~~~d~G~Y~C~a~N~  341 (600)
                      ....|.|.|..   ...+|.|++++..+....           ..     ..++.+......-.|.|.|.+.+.
T Consensus        16 ~dg~V~L~Cn~---~~k~i~W~kdg~~i~~~~-----------~~-----~ktlnLG~~~~DPRG~Y~C~~~~~   70 (81)
T d1sy6a1          16 EDGSVLLTCDA---EAKNITWFKDGKMIGFLT-----------ED-----KKKWNLGSNAKDPRGMYQCKGSQN   70 (81)
T ss_dssp             SSSEEEEEECS---CSSEEEEEETTEEEEEEE-----------SS-----CCCEEEEEGGGCCEEEEEEESSSS
T ss_pred             cCCeEEEEeCC---CCcEEEEecCCeEeeccc-----------CC-----cceeecCCcccCCCcceEcCCCCc
Confidence            45688999943   345899999886543210           00     125677777777889999976543