Psyllid ID: psy16770

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550----
Protein Sequence
MLWYTFLLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLAMIMNHYMKLEEEEI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccEEEEEcccccccccccccccccccccccccEEEEEEEEEEccccccccccEEEcccccEEEccccEEEEEcccccHHHHHHHHHHHccccEEEccccccHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHccccccccEEEccccccccccccccccccHHHHHHHHHccccccccccccHHHHccccccccEEEEEEEccccccHHHHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHcccccccccccEEEEEEEEccccEEEEEcccccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHcccccHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHccccccccccccccccccccEEEcccEcccccccEEEEEEEccccccHHHcccHHHHHHHHHccccEEEEEEEccHHHHHHHHccccccccEEEEEEccccEEEccccccHHHHHHHHHHHcccccEEccccccHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEccccccHHHHHHccccccccEEEEEcccccccccEEEcccccHHHHHHHHHHcccccccccccHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHccccccccccccEEEEEEccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MLWYTFLLNVLFINcavsldpyetlgvprtaSLQEIRKNYKRLVVEwhpdknndpTAQEKFLQLTEAYNILSDAErrkqydlfgttdgfsgqdsasrnfhnhmynpfddvfsegfnfpfeehdisLFHKLSTThwnfeknyipksyttphlILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLarrlgvgsqlpqialltdgrtsffkepsfsVQKMVEFFRLklpyklivplsatnvdAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYdqedsssvfqrfkvpgdkdsllifkedkdrpsasitmnsipvptlqditdnnpyltlprissqsmldavcpVKKLCVVLfsedspehdasRHTLRRFAQESRFVHNNIAFMYVFIEKQPEfvnaltspedsseISLHIAAMWRMDYKKIKYgwllgdavddwkdynttkdRLDAGLRSlvndpynnllyDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSlsrqhilpaVSLIFTVIIIVVLAMIMNHYMKLEEEEI
Flexible Loop (DISEMBL)
MLWYTFLLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQrfkvpgdkdsllifkedkdrpsasitmnsipvptlqdiTDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEdspehdasrHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLAMIMNHYMKLEEEEI
Low Complexity Region (SEG)
MLWYTFLLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLAMIMNHYMKLEEEEI
Disordered region (IsUnstruct)
*LWYTFLLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHP**********KFLQLTEAYNILSDAERRKQYDLFGTTDGF********NFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPG**DSLLIF*****************VPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFS************LRRFAQESRFVHNNIAFMYVFIEKQPEFVNALT******EISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLAMIMNHYMK******
Disordered Region (DISOPRED)
MLWYTFLLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDL********************MYNPFDDVFSEG*********************NFEKNYIPKSYTTPHLILFYSDWCF**L***********ELSPLGVGFFTVHVHNEQ**AR***VGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASRHT****A******HNNIAFMYVFIEKQPEFV**************HIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLAMIMNHYMKLE****
Disordered Region (DISEMBL)
MLWYTFLLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLAMIMNHYMKLEEEEI
Disordered Region (DISPRO)
MLWYTFLLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSG*DSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLAMIMNHYMKLE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLWYTFLLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLAMIMNHYMKLEEEEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	554	2.2.26 [Sep-21-2011]
Q5FVM7	771	DnaJ homolog subfamily C	yes	N/A	0.967	0.695	0.303	6e-66
Q9Y2G8	782	DnaJ homolog subfamily C	yes	N/A	0.949	0.672	0.302	2e-65
Q5RCM7	782	DnaJ homolog subfamily C	yes	N/A	0.949	0.672	0.299	3e-65
Q80TN4	772	DnaJ homolog subfamily C	yes	N/A	0.967	0.694	0.295	2e-64
Q5ZKZ4	777	DnaJ homolog subfamily C	yes	N/A	0.850	0.606	0.317	5e-61
Q8TQR1	382	Chaperone protein DnaJ OS	yes	N/A	0.171	0.248	0.447	8e-19
Q9UXR9	387	Chaperone protein DnaJ OS	N/A	N/A	0.171	0.245	0.437	5e-18
P0CW06	389	Chaperone protein DnaJ OS	yes	N/A	0.171	0.244	0.437	7e-18
P0CW07	389	Chaperone protein DnaJ OS	yes	N/A	0.171	0.244	0.437	7e-18
Q6TUG0	358	DnaJ homolog subfamily B	no	N/A	0.176	0.273	0.455	3e-17

>sp|Q5FVM7|DJC16_RAT DnaJ homolog subfamily C member 16 OS=Rattus norvegicus GN=Dnajc16 PE=2 SV=1

 Score =  252 bits (643), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 172/567 (30%), Positives = 288/567 (50%), Gaps = 31/567 (5%)

Query: 3   WYTFLLNVLFINC--AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEK 60
           W   ++ VL +    A+  DPY  LGV RTAS  +I+K YK+L  EWHPDKN DP A++K
Sbjct: 10  WQFLIVLVLILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDK 69

Query: 61  FLQLTEAYNILSDAERRKQYDLF---GTTDGFSGQDSAS-RNFHNHMYNPFDDVFSEGFN 116
           F+Q+++AY ILS+ E+R  YD +   G   G+  Q     R+FH + Y  FD+ F   F+
Sbjct: 70  FIQISKAYEILSNEEKRTNYDHYGDAGENQGYQQQREYRFRHFHENFY--FDESF---FH 124

Query: 117 FPF-EEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDE 175
           FPF  E   S+  K      ++    +P S+  P+LI   SDWCF+C+ +EPI+K+++ E
Sbjct: 125 FPFNSERRDSIDEKYLLHFSHYVNEVVPDSFKKPYLIKITSDWCFSCIHIEPIWKEVVQE 184

Query: 176 LSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLK 235
           L  LGVG   VH   E+ LA  LG  S  P I  + +G+ SFF   +   + + +F    
Sbjct: 185 LEGLGVGIGVVHAGYERRLAHHLGAHST-PSILGIINGKISFFHN-AVVHENLRQFVESL 242

Query: 236 LPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVY 295
           LP  L+  ++  N   FL  W+++NK HALLF ++    L Y + AF ++  + FG +  
Sbjct: 243 LPGNLVEKVTNKNYVRFLSGWQQENKPHALLFGQTPAAPLLYKLTAFAYKDYVSFGYVYV 302

Query: 296 DQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRI 355
                  + +++ V     ++LIFKE  ++P+ +I    +    ++D    N YL   R+
Sbjct: 303 GLRGVEEMTRQYNVNIYAPTMLIFKEHINKPADAIQARGLKKQVIEDFITQNKYLLASRL 362

Query: 356 SSQSMLDAVCPVK------KLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVF 409
           +SQ +   +CPVK      K CVVL + ++ +          FA  +    + + F++V+
Sbjct: 363 TSQKLFHELCPVKRSHRQRKYCVVLLTAEANKLSKPFDAFLSFALAN--TQDTVRFVHVY 420

Query: 410 IEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDD-WKDYNTTKDRLD 468
             +Q EF + L    ++ +    ++ + R +      G ++   ++D W    + K  L 
Sbjct: 421 SSRQQEFASTLLPDIEAFQGKSGVSILERRNTA----GRVVFKTLEDPWTGSESDKFVLL 476

Query: 469 AGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSL---SRQHILP 525
             L  L  DP   L  +  L +++DE      +R    +  ++    +SL   + + ++P
Sbjct: 477 GYLDQLRKDP-AFLSSEAVLPDLTDELAPVFLLRWLYSVSDYLSDFWESLLHSNWREMMP 535

Query: 526 AVSLIFTVIIIVVLAMIMNHYMKLEEE 552
            +SLIF+ + I+   +I+  +    EE
Sbjct: 536 LLSLIFSALFILFGTVIVQAFSDSNEE 562

Rattus norvegicus (taxid: 10116)

>sp|Q9Y2G8|DJC16_HUMAN DnaJ homolog subfamily C member 16 OS=Homo sapiens GN=DNAJC16 PE=2 SV=3

 Score =  251 bits (640), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 169/558 (30%), Positives = 282/558 (50%), Gaps = 32/558 (5%)

Query: 7   LLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTE 66
           L+ +L I  A+  DPY  LGV RTAS  +I+K YK+L  EWHPDKN DP A++KF+Q+++
Sbjct: 16  LVLILQILSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISK 75

Query: 67  AYNILSDAERRKQYDLFGTTD-------GFSGQDSASRNFHNHMYNPFDDVFSEGFNFPF 119
           AY ILS+ E+R  YD +G              ++   R+FH + Y  FD+ F   F+FPF
Sbjct: 76  AYEILSNEEKRSNYDQYGDAGENQGYQKQQQQREYRFRHFHENFY--FDESF---FHFPF 130

Query: 120 -EEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP 178
             E   S+  K      ++    +P S+  P+LI   SDWCF+C+ +EP++K+++ EL  
Sbjct: 131 NSERRDSIDEKYLLHFSHYVNEVVPDSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEE 190

Query: 179 LGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPY 238
           LGVG   VH   E+ LA  LG  S  P I  + +G+ SFF   +   + + +F    LP 
Sbjct: 191 LGVGIGVVHAGYERRLAHHLGAHST-PSILGIINGKISFFHN-AVVRENLRQFVESLLPG 248

Query: 239 KLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQE 298
            L+  ++  N   FL  W+++NK H LLF ++  V L Y + AF ++  + FG +     
Sbjct: 249 NLVEKVTNKNYVRFLSGWQQENKPHVLLFDQTPIVPLLYKLTAFAYKDYLSFGYVYVGLR 308

Query: 299 DSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQ 358
            +  + +R+ +     +LL+FKE  +RP+  I    +    + D    N YL   R++SQ
Sbjct: 309 GTEEMTRRYNINIYAPTLLVFKEHINRPADVIQARGMKKQIIDDFITRNKYLLAARLTSQ 368

Query: 359 SMLDAVCPVK------KLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEK 412
            +   +CPVK      K CVVL + ++ +          FA  +    + + F++V+  +
Sbjct: 369 KLFHELCPVKRSHRQRKYCVVLLTAETTKLSKPFEAFLSFALAN--TQDTVRFVHVYSNR 426

Query: 413 QPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDD-WKDYNTTKDRLDAGL 471
           Q EF + L    ++ +    ++ + R +      G ++   ++D W    + K  L   L
Sbjct: 427 QQEFADTLLPDSEAFQGKSAVSILERRNTA----GRVVYKTLEDPWIGSESDKFILLGYL 482

Query: 472 RSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSL---SRQHILPAVS 528
             L  DP   L  +  L +++DE      +R F     +I     S+   + + ++P +S
Sbjct: 483 DQLRKDP-ALLSSEAVLPDLTDELAPVFLLRWFYSASDYISDCWDSIFHNNWREMMPLLS 541

Query: 529 LIFTVIIIVVLAMIMNHY 546
           LIF+ + I+   +I+  +
Sbjct: 542 LIFSALFILFGTVIVQAF 559

Homo sapiens (taxid: 9606)

>sp|Q5RCM7|DJC16_PONAB DnaJ homolog subfamily C member 16 OS=Pongo abelii GN=DNAJC16 PE=2 SV=1

 Score =  249 bits (637), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 167/558 (29%), Positives = 282/558 (50%), Gaps = 32/558 (5%)

Query: 7   LLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTE 66
           L+ +L I  A+  DPY+ LGV RTAS  +I+K YK+L  EWHPDKN DP A++KF+Q+++
Sbjct: 16  LVLILQILSALDFDPYKVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISK 75

Query: 67  AYNILSDAERRKQYDLFGTTD-------GFSGQDSASRNFHNHMYNPFDDVFSEGFNFPF 119
           AY ILS+ E+R  YD +G              ++   R+FH + Y  FD+ F   F+FPF
Sbjct: 76  AYEILSNEEKRSNYDQYGDAGENQGYQKQQQQREYRFRHFHENFY--FDESF---FHFPF 130

Query: 120 -EEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP 178
             E   S+  K      ++    +P S+  P+LI   SDWCF+C+ +EP++K+++ EL  
Sbjct: 131 NSERRDSIDEKYLLHFSHYVNEVVPDSFKKPYLIKITSDWCFSCIHIEPVWKEVVQELEE 190

Query: 179 LGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPY 238
           LGVG   VH   E+ LA  LG  S  P I  + +G+ SFF+  +   + + +F    LP 
Sbjct: 191 LGVGIGVVHAGYERRLAHHLGAHST-PSILGIINGKISFFRN-AVVRENLRQFVESLLPG 248

Query: 239 KLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQE 298
            L+  ++  N   FL  W+++NK H LLF ++  V L Y + AF ++  + FG +     
Sbjct: 249 NLVEKVTGKNYVRFLSGWQQENKPHVLLFDQTPIVPLLYKLTAFAYKDYLSFGYVYVGLR 308

Query: 299 DSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQ 358
            +  + +R+ +     +LL+FKE  ++P+  I    +    + D    N +L   R++SQ
Sbjct: 309 GTEEMTRRYNINIYAPTLLVFKEHINKPADVIQARGMKKQIIDDFITQNKHLLAARLTSQ 368

Query: 359 SMLDAVCPV------KKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEK 412
            +   +CPV      +K CVVL + ++ +          FA  +    + + F++V+  +
Sbjct: 369 KLFHELCPVRRSHRQRKYCVVLLTAETTKLSKPFEAFLSFALAN--TQDTVRFVHVYSNR 426

Query: 413 QPEFVNALTSPEDSSEISLHIAAMWRMDYK-KIKYGWLLGDAVDDWKDYNTTKDRLDAGL 471
           Q EF   L    ++ +    ++ + R +   ++ Y  L     D W    + K  L   L
Sbjct: 427 QQEFAGTLLPDGEAFQGKSAVSILERRNTAGRVVYKTL----EDPWTGSESDKFILLGYL 482

Query: 472 RSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSL---SRQHILPAVS 528
             L  DP   L  +  L +++DE      +R F     +I     S+   + + ++P +S
Sbjct: 483 DQLRKDP-ALLSSEAVLPDLTDELAPVFLLRWFYSACDYISDCWDSIFHNNWREMMPLLS 541

Query: 529 LIFTVIIIVVLAMIMNHY 546
           LIF+ + I+   +I+  +
Sbjct: 542 LIFSALFILFGTVIVQAF 559

Pongo abelii (taxid: 9601)

>sp|Q80TN4|DJC16_MOUSE DnaJ homolog subfamily C member 16 OS=Mus musculus GN=Dnajc16 PE=1 SV=2

 Score =  247 bits (630), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 168/568 (29%), Positives = 287/568 (50%), Gaps = 32/568 (5%)

Query: 3   WYTFLLNVLFINC--AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEK 60
           W   ++ VL +    A+  DPY  LGV RTAS  +I+K YK+L  EWHPDKN DP A+++
Sbjct: 10  WRFLMVLVLILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDR 69

Query: 61  FLQLTEAYNILSDAERRKQYDLF---GTTDGFSGQDSAS--RNFHNHMYNPFDDVFSEGF 115
           F+Q+++AY ILS+ E+R  YD +   G   G+  Q      R+FH + Y  FD+ F   F
Sbjct: 70  FIQISKAYEILSNEEKRTNYDHYGDAGENQGYQKQQREHRFRHFHENFY--FDESF---F 124

Query: 116 NFPFEEHDISLFHKLSTTHWNFEKNYI-PKSYTTPHLILFYSDWCFACLQVEPIFKKLMD 174
           +FPF         +    H++   N + P+S+  P+LI   SDWCF+C+ +EP++K+++ 
Sbjct: 125 HFPFNAERRDSGDEKYLLHFSHYVNEVLPESFKRPYLIKITSDWCFSCIHIEPVWKEVVQ 184

Query: 175 ELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRL 234
           EL  LGVG   VH   E+ LA  LG  S  P I  +  G+ +FF   +   + + +F   
Sbjct: 185 ELEGLGVGIGVVHAGYERRLAHHLGAHST-PSILGVISGKITFFHN-AVVHENLRQFVES 242

Query: 235 KLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIV 294
            LP  L+  ++  N   FL  W+++NK HALLF ++  V L Y + AF ++  + FG + 
Sbjct: 243 LLPGNLVEKVTNKNYVRFLSGWQQENKPHALLFGQTPAVPLMYKLTAFAYKDYVSFGYVY 302

Query: 295 YDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPR 354
                   + +++ V     ++LIFKE  ++P+  I    +    ++D    N YL   R
Sbjct: 303 VGLRGVEEMTRQYNVNLYTPTMLIFKEHINKPADVIQARGLKKQVIEDFIAQNKYLLASR 362

Query: 355 ISSQSMLDAVCPVK------KLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYV 408
           ++SQ +   +CPVK      K CVVL + ++ +          FA  +    + + F++V
Sbjct: 363 LTSQRLFHELCPVKRSHRQRKYCVVLLTAETNKVSKPFEAFLSFALAN--TQDTVRFVHV 420

Query: 409 FIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDD-WKDYNTTKDRL 467
           +  +Q EF + L    ++ +    ++ + R +      G ++   ++D W    + K  L
Sbjct: 421 YSNRQQEFASTLLPDMEAFQGKSGVSILERRNTA----GRVVFKTLEDPWTGSESDKFVL 476

Query: 468 DAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSL---SRQHIL 524
              L  L  DP   L  +  L +++DE      +R    +  ++    +SL   + + ++
Sbjct: 477 LGYLDQLRKDP-AFLSSEAVLPDLTDELAPVFFLRWLYSVSDYLSDFWESLLHSNWREMM 535

Query: 525 PAVSLIFTVIIIVVLAMIMNHYMKLEEE 552
           P +SLIF+ + I+   +++  +    EE
Sbjct: 536 PLLSLIFSALFILFGTVMVQAFSDSNEE 563

Mus musculus (taxid: 10090)

>sp|Q5ZKZ4|DJC16_CHICK DnaJ homolog subfamily C member 16 OS=Gallus gallus GN=DNAJC16 PE=2 SV=1

 Score =  236 bits (601), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 158/497 (31%), Positives = 249/497 (50%), Gaps = 26/497 (5%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           DPY  LGV R++S  +I+K YKRL  +WHPDKN DP A++KF+Q+++AY ILS+ E+R  
Sbjct: 28  DPYRVLGVGRSSSQADIKKAYKRLARQWHPDKNKDPGAEDKFIQISKAYEILSNEEKRAN 87

Query: 80  YDLF---GTTDGFSG-QDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHW 135
           +D +   G + G+S  Q     +FH   Y  FD+ F   F+FPF         +    H+
Sbjct: 88  FDRYGDAGESQGYSQHQQRQFHHFHEGFY--FDESF---FHFPFNSERRDTSDEKYLLHF 142

Query: 136 NFEKNYI-PKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGL 194
           +   N I P S+  P+LI   SDWCF+C+ +EP++K++  EL  LGVG   VH   E+ L
Sbjct: 143 SHYINEIVPDSFKKPYLIKITSDWCFSCIHIEPVWKEVAQELEALGVGIGVVHAGYERRL 202

Query: 195 ARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLD 254
           A  LG  S  P I  L +G+ +FF   +   + + +F    LP  L+  ++  N   FL 
Sbjct: 203 AHHLGAHST-PSILGLINGKITFF-HSAVVRENLRQFVENLLPGNLVEKITDKNYIRFLS 260

Query: 255 NWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD 314
           NW+++NK H LLF     V L Y + AF +R  + FG +      +  +  ++ +     
Sbjct: 261 NWKKENKPHVLLFDHMPVVPLLYKLTAFAYRDYLSFGYVYVGLRGTEELSSQYNINVYTP 320

Query: 315 SLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKL---- 370
           +L+IFKE  D+P+       +    + D    N +L   R+++Q +   +CPVKK     
Sbjct: 321 TLMIFKEHIDKPADVAQARDMKKQLIDDFLSQNKFLMAARLTNQRLFQELCPVKKSHRQR 380

Query: 371 --CVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSE 428
             CVVL + +  +   +      FA  +    + + F +++ ++QPEF +AL   E+   
Sbjct: 381 KHCVVLLTGEGDKFADAYEAFLTFAVAN--TKDTLRFAHIYNDRQPEFADALLMDEEKYR 438

Query: 429 ISLHIAAMWRM-DYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTA 487
               +  + R  +  KI Y  L     + W+  N     L   L  L  DP   L  +T 
Sbjct: 439 GKSAVVILERRNNAGKIAYKTL----EEAWQGSNEDNFILLDLLDQLRTDP-GLLSSETV 493

Query: 488 LKEISDEYIQSLGVRIF 504
           L +++DE      +R F
Sbjct: 494 LADLNDELAPMFLIRWF 510

Gallus gallus (taxid: 9031)

>sp|Q8TQR1|DNAJ_METAC Chaperone protein DnaJ OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=dnaJ PE=3 SV=1

 Score = 95.9 bits (237), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 64/96 (66%), Gaps = 1/96 (1%)

Query: 16  AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 75
           A   D YE LG+P+ AS+++I+K Y++L +++HPD+N DP A++KF +++EAY +LSD E
Sbjct: 2   ATKRDYYEILGLPKDASVEDIKKTYRKLALQYHPDRNKDPGAEDKFKEISEAYAVLSDTE 61

Query: 76  RRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVF 111
           +R QYD FG   G   Q SA   F    +  F D+F
Sbjct: 62  KRAQYDRFGHA-GIDNQYSAEDIFRGADFGGFGDIF 96

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937)

>sp|Q9UXR9|DNAJ_METTE Chaperone protein DnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3 SV=1

 Score = 93.2 bits (230), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 67/96 (69%), Gaps = 1/96 (1%)

Query: 16  AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 75
           A + D YE LG+ R A+ ++I+K+Y++L +++HPD+N +P A+EKF +++EAY +LSD E
Sbjct: 2   ATTRDYYEILGLSRDATPEDIKKSYRKLALKYHPDRNKEPGAEEKFKEISEAYAVLSDPE 61

Query: 76  RRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVF 111
           +R QYD FG   G +GQ +A   F    ++ F D+F
Sbjct: 62  KRAQYDRFGHA-GINGQYTAEDIFRGADFSGFGDIF 96

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Methanosarcina thermophila (taxid: 2210)

>sp|P0CW06|DNAJ_METMZ Chaperone protein DnaJ OS=Methanosarcina mazei GN=dnaJ PE=3 SV=1

 Score = 92.4 bits (228), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 64/96 (66%), Gaps = 1/96 (1%)

Query: 16  AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 75
           A   D YE LG+ + +S+++I+K Y++L +++HPD+N +P A+EKF +++EAY +LSDAE
Sbjct: 2   ATKRDYYEILGLSKDSSVEDIKKTYRKLALQYHPDRNKEPGAEEKFKEISEAYAVLSDAE 61

Query: 76  RRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVF 111
           +R QYD FG   G   Q SA   F    +  F D+F
Sbjct: 62  KRAQYDRFGHA-GIDNQYSAEDIFRGADFGGFGDIF 96

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Methanosarcina mazei (taxid: 2209)

>sp|P0CW07|DNAJ_METMA Chaperone protein DnaJ OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=dnaJ PE=3 SV=1

 Score = 92.4 bits (228), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 64/96 (66%), Gaps = 1/96 (1%)

Query: 16  AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 75
           A   D YE LG+ + +S+++I+K Y++L +++HPD+N +P A+EKF +++EAY +LSDAE
Sbjct: 2   ATKRDYYEILGLSKDSSVEDIKKTYRKLALQYHPDRNKEPGAEEKFKEISEAYAVLSDAE 61

Query: 76  RRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVF 111
           +R QYD FG   G   Q SA   F    +  F D+F
Sbjct: 62  KRAQYDRFGHA-GIDNQYSAEDIFRGADFGGFGDIF 96

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952)

>sp|Q6TUG0|DJB11_RAT DnaJ homolog subfamily B member 11 OS=Rattus norvegicus GN=Dnajb11 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 68/101 (67%), Gaps = 3/101 (2%)

Query: 5   TFLLNVLFINCAV--SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKF 61
           TF L +L++  AV    D Y+ LGVPR+AS+++I+K Y++L ++ HPD+N +DP AQEKF
Sbjct: 8   TFCLLLLYLIGAVIAGRDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKF 67

Query: 62  LQLTEAYNILSDAERRKQYDLFGTTDGFSGQDSASRNFHNH 102
             L  AY +LSD+E+RKQYD +G      G  S+  +  +H
Sbjct: 68  QDLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHGDIFSH 108

Serves as a co-chaperone for HSPA5. Binds directly to both unfolded proteins that are substrates for ERAD and nascent unfolded peptide chains, but dissociates from the HSPA5-unfolded protein complex before folding is completed. May help recruiting HSPA5 and other chaperones to the substrate. Stimulates HSPA5 ATPase activity.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	554
383849234	816	PREDICTED: dnaJ homolog subfamily C memb	0.960	0.651	0.423	1e-127
350414890	816	PREDICTED: dnaJ homolog subfamily C memb	0.960	0.651	0.424	1e-126
157129663	807	hypothetical protein AaeL_AAEL002502 [Ae	0.954	0.655	0.418	1e-125
307199297	812	DnaJ-like protein subfamily C member 16	0.956	0.652	0.410	1e-125
340722024	816	PREDICTED: dnaJ homolog subfamily C memb	0.960	0.651	0.421	1e-125
328777418	815	PREDICTED: dnaJ homolog subfamily C memb	0.960	0.652	0.413	1e-124
380012969	815	PREDICTED: dnaJ homolog subfamily C memb	0.960	0.652	0.413	1e-124
307173003	809	DnaJ-like protein subfamily C member 16	0.956	0.655	0.423	1e-124
170052877	831	conserved hypothetical protein [Culex qu	0.963	0.642	0.397	1e-121
312380617	795	hypothetical protein AND_07273 [Anophele	0.989	0.689	0.398	1e-120

>gi|383849234|ref|XP_003700250.1| PREDICTED: dnaJ homolog subfamily C member 16-like [Megachile rotundata]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/546 (42%), Positives = 351/546 (64%), Gaps = 14/546 (2%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           +PY+ LGV + A+LQEIRK YK LV EWHPDK + P A+ KF+++T+AY IL+D ERRK+
Sbjct: 58  NPYKILGVHKRATLQEIRKAYKNLVKEWHPDKTDHPGAENKFVEITKAYEILTDPERRKK 117

Query: 80  YDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEK 139
           +D  G T+    +     +  N++ +P +++F+  F F ++  DISLF+K+S T+ +FE 
Sbjct: 118 FDNHGITEESISRQRRDNSHFNNVLDPLEELFAGNFKFHYQNRDISLFYKMSITYRSFEN 177

Query: 140 NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLG 199
             +PK+Y TP++ILFYSDWCFACLQVEP +++L+DEL PLG+G  T H   E  LARRLG
Sbjct: 178 VIVPKTYRTPYMILFYSDWCFACLQVEPTWRRLIDELEPLGLGLATAHAEKESALARRLG 237

Query: 200 VGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWRED 259
           + S LP + ++ DGR+S +KE  FS+QK+V+F R K PYKLI  ++  NVD FL  W  D
Sbjct: 238 IHS-LPCLVVIIDGRSSVYKESLFSIQKIVDFLRNKFPYKLIPSINTNNVDNFLSGWI-D 295

Query: 260 NKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF 319
           N++ AL+F +   VRLRYL  AF +R  + FG +  D+ ++ ++  ++K+  D D+LL+F
Sbjct: 296 NRIRALIFDKKESVRLRYLFIAFYYRDRVAFGFVQMDKPETEAIAAKYKISMDLDTLLLF 355

Query: 320 KEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVC------PVKKLCVV 373
            E+ ++P AS++M  I   T+ ++  NN +L LPR+S+Q+MLD+VC      P K+LC V
Sbjct: 356 NENSEKPMASVSMKDISSDTMHNVISNNKFLALPRLSNQAMLDSVCPPEWLRPQKRLCAV 415

Query: 374 LFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSS-EISL 431
           L S ++SP HD +RH  R+ A ES +    + + YVF + QPEFV+AL++ E S  E  L
Sbjct: 416 LISQQNSPLHDLARHKFRQAALESSYSTERVRYTYVFKDTQPEFVSALSTGEGSPLEPLL 475

Query: 432 HIAAMWRMDYKKIKYGWLLGD---AVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTAL 488
           HI  +WR D   +KY WL  D   A  D   +N T+  L+  ++ L+      L Y   +
Sbjct: 476 HIVIIWRRDANHLKYEWLPTDWIEAAQDETQWNETRQNLEQTIQRLLRVS-EALPYAAVV 534

Query: 489 KEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLAMIMNHYMK 548
            E++DE+ Q    ++  +  + ++    SL+++ ILP VS+I T+++I      M++ +K
Sbjct: 535 GELADEHAQGTVDKLIGKALLAVDYISDSLTKEQILPLVSVIATLMLIGAAGYGMSYLVK 594

Query: 549 LEEEEI 554
           LEE  +
Sbjct: 595 LEEASV 600

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414890|ref|XP_003490458.1| PREDICTED: dnaJ homolog subfamily C member 16-like [Bombus impatiens]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/546 (42%), Positives = 348/546 (63%), Gaps = 14/546 (2%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           +PY+ LGV + A+LQEIRK YK LV EWHPDK N P A+ KF+++T+AY IL+D ERR++
Sbjct: 58  NPYKILGVHKRATLQEIRKAYKNLVKEWHPDKTNHPGAENKFVEITKAYEILTDPERRRK 117

Query: 80  YDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEK 139
           +D  G T+    +     +  N++++P +++F+  F F ++  DISLF+K+S T+ +FE 
Sbjct: 118 FDNHGITEESISRQRRDNSHFNNVFDPLEELFARNFKFHYQNRDISLFYKMSITYRSFEN 177

Query: 140 NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLG 199
             +PK+  TP+LILFYSDWCFACLQVEPI+++L+DEL PLG+G  T H   E  LAR+LG
Sbjct: 178 VIVPKTLRTPYLILFYSDWCFACLQVEPIWRRLIDELEPLGLGLATAHAEKESALARKLG 237

Query: 200 VGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWRED 259
           + S LP + +  DGRTS +KE  FS+QK+V+F R K PYKLI  ++  NVD FL  W  D
Sbjct: 238 IHS-LPCLVVTIDGRTSVYKESLFSIQKIVDFLRNKFPYKLIPNINKNNVDNFLSGWI-D 295

Query: 260 NKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF 319
           N++ AL+F +   VRLRYL  AF +R  + FG +   + D+  +  ++K+  D D+LL+F
Sbjct: 296 NRIRALIFDKKESVRLRYLFIAFYYRDRVAFGFVQTGKLDTELIVMKYKISVDLDTLLLF 355

Query: 320 KEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVC------PVKKLCVV 373
            E+ ++P AS++M  I   T+ ++  NN +L LPR+S+Q+MLD+VC      P K+LC V
Sbjct: 356 NENSEKPMASVSMKDISSDTMHNVISNNKFLALPRLSNQAMLDSVCPPEWLRPQKRLCAV 415

Query: 374 LFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSS-EISL 431
           L S ++SP HD +RH  R+ A ES +    + + YVF + QPEFV+AL++ E S  E  L
Sbjct: 416 LISQQNSPLHDLARHKFRQAALESSYSTERVRYTYVFKDTQPEFVSALSTGEGSPLEPLL 475

Query: 432 HIAAMWRMDYKKIKYGWLLG---DAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTAL 488
           HI  +WR D   +KY WL     +A  D   +N T+  L+  ++ L+      L Y   +
Sbjct: 476 HIVIIWRRDANHLKYEWLPTGWIEAAQDETQWNETRRNLEQTIQRLLRAS-EALPYAAVV 534

Query: 489 KEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLAMIMNHYMK 548
            E++DE+ Q    ++  +  + ++    SL+++ ILP VS+I T+++I      M++  K
Sbjct: 535 GELADEHAQGTVDKLIGKALLAVDYISDSLTKEQILPLVSVIATLMLIGAAGYGMSYLAK 594

Query: 549 LEEEEI 554
           LEE  I
Sbjct: 595 LEEASI 600

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157129663|ref|XP_001655444.1| hypothetical protein AaeL_AAEL002502 [Aedes aegypti] gi|108882045|gb|EAT46270.1| AAEL002502-PA [Aedes aegypti]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/554 (41%), Positives = 350/554 (63%), Gaps = 25/554 (4%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           DPY+ LGV + A+LQ+IR+ YK+L  EWHPDK++ P A+ KF+++ +AY +LSD+ERRK 
Sbjct: 44  DPYKILGVTKHATLQDIRRAYKQLAKEWHPDKSDHPEAETKFVEIKQAYELLSDSERRKA 103

Query: 80  YDLFGTT--DGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNF 137
           YDL+G T  D    ++    + +    +PF+  F  G NF F + DISLFH+LS T   +
Sbjct: 104 YDLYGITNEDAHLYKERPDYSSYGRFPDPFEQFF--GHNFNFHDQDISLFHRLSITSKYY 161

Query: 138 EKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARR 197
           E N +PKS+ TP +++FYSDWCF+C++    FKK++D L P GV F T++  +E  L R+
Sbjct: 162 ETNIVPKSHHTPQILMFYSDWCFSCMKAANSFKKMIDTLEPFGVTFATINAGHENQLVRK 221

Query: 198 LGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWR 257
           +GV S LP + ++ DG    +KE  ++ Q++VEF R KLPYKL++P+   ++D FL  W 
Sbjct: 222 VGVHS-LPCVIMVLDGHNYVYKESVYNTQRVVEFIRQKLPYKLLLPVDDGSIDNFLQGW- 279

Query: 258 EDNKVHALLFQ-RSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL 316
            DN+V AL+ + RS P RLRYLI AF  R  + FG +  + + S  + +R+KV    D+L
Sbjct: 280 ADNRVRALIMEPRSQP-RLRYLITAFHFRERVAFGFVQLNSQKSQHIQERYKVHPSLDTL 338

Query: 317 LIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPV------KKL 370
           LIF ED  RP ASI+M+ IP PTL +I   N YL LPR+SSQ+ML+ VCP       K+L
Sbjct: 339 LIFNEDSTRPVASISMSDIPTPTLNNIISVNKYLALPRLSSQAMLEGVCPAEWNRPRKRL 398

Query: 371 CVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEIS 430
           CVVL +E++  HD +R  +RR A ES +    + F Y++ EKQ EF++AL      +E  
Sbjct: 399 CVVLVTENTSTHDEARQAMRRIAMESNYSPERVRFAYIYQEKQTEFISALAEHSKLTETM 458

Query: 431 LHIAAMWRMDYKKIKYGWL-------LGDAVDDWK---DYNTTKDRLDAGLRSLVNDPYN 480
           L +  +WR D K IKY W+       L  +V++     +YN TK +LD  ++ L+     
Sbjct: 459 LKVVIIWRKDAKHIKYEWVHEATMESLNRSVENETHELNYNNTKQKLDGAIQRLLRSS-E 517

Query: 481 NLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLA 540
            L Y+  +K++ DE+ Q L +RI N++ +  E   ++L ++HILPA+S++ T+  I+   
Sbjct: 518 ALTYEAEVKDLLDEHAQGLVIRILNKVLLAFEYMTENLGQEHILPALSVVGTIAFILGAG 577

Query: 541 MIMNHYMKLEEEEI 554
            +M++ +++EEE I
Sbjct: 578 YLMSYLVRVEEENI 591

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199297|gb|EFN79950.1| DnaJ-like protein subfamily C member 16 [Harpegnathos saltator]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/548 (41%), Positives = 355/548 (64%), Gaps = 18/548 (3%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           +PY+ LGV R A+LQ+IRK YK LV EWHPDK + P A++KF+++T+AY +L+D ERR++
Sbjct: 57  NPYKILGVSRHATLQDIRKAYKHLVKEWHPDKTDHPMAEDKFVEITKAYELLTDPERRRK 116

Query: 80  YDLFGTT--DGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNF 137
           +D FG T  DG S Q   S+ ++  + +P +++FS  F F +++ DI+LFHK+S T+ ++
Sbjct: 117 FDNFGITSEDGVSRQRRDSKQYN--VRDPLEELFSGNFQFHYQKRDITLFHKMSITYRSY 174

Query: 138 EKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARR 197
           E   +PK+Y  P+LILFYSDWCFAC QVEP +++L+DEL PLG G  TV +  E  LARR
Sbjct: 175 ENMIVPKTYRMPYLILFYSDWCFACQQVEPTWRRLIDELEPLGFGLATVDIKKETSLARR 234

Query: 198 LGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWR 257
           LG+ S LP + ++ +G  + +KE  FS+QK++E+ R KLPYKLI  ++  NV+ FL  W 
Sbjct: 235 LGIHS-LPCLVVIIEGHANVYKESLFSIQKVIEYVRSKLPYKLITTVNNVNVENFLSGW- 292

Query: 258 EDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLL 317
            DN++ AL+F++   +RLRYL+ +F HR  + FG +     ++  +  ++K+ G+ D+LL
Sbjct: 293 TDNRIRALIFEKRDFIRLRYLLTSFYHRDRVAFGFVQVGIPETKDITSKYKISGELDTLL 352

Query: 318 IFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVC------PVKKLC 371
           +F E+ ++P AS++M  I   T+ ++  NN +L LPR+S+Q+MLD++C      P K+LC
Sbjct: 353 LFNENSEKPMASVSMKDISSETMHNVIANNKFLVLPRLSNQAMLDSICPPEWLKPQKRLC 412

Query: 372 VVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSS-EI 429
            VL S ++SP HD +RH  R+ A ES +    + + Y+F + QPEFV+AL++ EDS  E 
Sbjct: 413 AVLISQQNSPLHDIARHKFRQAALESSYSSERVRYTYIFKDTQPEFVSALSASEDSPLEP 472

Query: 430 SLHIAAMWRMDYKKIKYGWL---LGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDT 486
             HI  +WR D   +KY WL     DA  D + +N T+  L+  ++ L+      L Y  
Sbjct: 473 LSHIVIIWRRDANHLKYEWLPNGWADAAQDERIWNETRRHLEKTIQKLLR-ATEALPYAA 531

Query: 487 ALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLAMIMNHY 546
            ++E++DE+ Q    R+  R  + ++    +L+++ ILP +S++ T+++I      M++ 
Sbjct: 532 VIEELADEHAQGTVGRLIGRALLAVDYISDNLTKEQILPLISVLATLVLIGAAGYGMSYL 591

Query: 547 MKLEEEEI 554
            KLEE  I
Sbjct: 592 AKLEEATI 599

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722024|ref|XP_003399412.1| PREDICTED: dnaJ homolog subfamily C member 16-like [Bombus terrestris]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/546 (42%), Positives = 347/546 (63%), Gaps = 14/546 (2%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           +PY+ LGV + A+LQEIRK YK LV EWHPDK N P A+ KF+++T+AY IL+D ERR++
Sbjct: 58  NPYKILGVHKRATLQEIRKAYKNLVKEWHPDKTNHPGAENKFVEITKAYEILTDPERRRK 117

Query: 80  YDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEK 139
           +D  G T+    +     +  N++++P +++ +  F + ++  DISLF+K+S T+ +FE 
Sbjct: 118 FDNHGITEESISRQRRDNSHFNNVFDPLEELLARNFKYHYQNRDISLFYKMSITYRSFEN 177

Query: 140 NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLG 199
             +PK+  TP+LILFYSDWCFACLQVEPI+++L+DEL PLG+G  T H   E  LAR+LG
Sbjct: 178 IIVPKTLHTPYLILFYSDWCFACLQVEPIWRRLIDELEPLGLGLATAHAEKESALARKLG 237

Query: 200 VGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWRED 259
           + S LP + +  DGRTS +KE  FS+QK+V+F R K PYKLI  ++  NVD FL  W  D
Sbjct: 238 IHS-LPCLVVTIDGRTSVYKESLFSIQKIVDFLRNKFPYKLIPNINKNNVDKFLSGWI-D 295

Query: 260 NKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF 319
           N++ AL+F +   VRLRYL  AF +R  + FG +   + D+  +  ++K+  D D+LL+F
Sbjct: 296 NRIRALIFDKKESVRLRYLFIAFYYRDRVAFGFVQTGKLDTELIVMKYKISVDLDTLLLF 355

Query: 320 KEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVC------PVKKLCVV 373
            E+ ++P AS++M  I   T+ ++  NN +L LPR+S+Q+MLD+VC      P K+LC V
Sbjct: 356 NENSEKPMASVSMKDISSDTMHNVISNNKFLALPRLSNQAMLDSVCPPEWLRPQKRLCAV 415

Query: 374 LFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSS-EISL 431
           L S ++SP HD +RH  R+ A ES +    + + YVF + QPEFV+AL++ E S  E  L
Sbjct: 416 LISQQNSPLHDLARHKFRQAALESSYSTERVRYTYVFKDTQPEFVSALSTGEGSPLEPLL 475

Query: 432 HIAAMWRMDYKKIKYGWLLG---DAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTAL 488
           HI  +WR D   +KY WL     +A  D   +N T+  L+  ++ L+      L Y   +
Sbjct: 476 HIVIIWRRDANHLKYEWLPTGWIEAAQDETQWNETRRNLEQTIQRLLRAS-EALPYAAVV 534

Query: 489 KEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLAMIMNHYMK 548
            E++DE+ Q    ++  +  + ++    SL+++ ILP VS+I T+++I      M++  K
Sbjct: 535 GELADEHAQGTVDKLIGKALLAVDYISDSLTKEQILPLVSVIATLMLIGAAGYGMSYLAK 594

Query: 549 LEEEEI 554
           LEE  I
Sbjct: 595 LEEASI 600

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777418|ref|XP_395584.4| PREDICTED: dnaJ homolog subfamily C member 16-like [Apis mellifera]

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/546 (41%), Positives = 348/546 (63%), Gaps = 14/546 (2%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           +PY+ LGV + A+LQEIRK YK LV EWHPDK + P A+ KF+++T+AY IL+D ERRK+
Sbjct: 57  NPYKILGVHKRATLQEIRKAYKNLVKEWHPDKTDHPGAENKFVEITKAYEILTDPERRKK 116

Query: 80  YDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEK 139
           +D  G T+    +     +  N++++P +++F+  F F ++  DISLF+K+S T+ +FE 
Sbjct: 117 FDNHGITEENISRQRRDNSHFNNVFDPLEELFARNFKFHYQNRDISLFYKMSITYRSFEN 176

Query: 140 NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLG 199
             +PK++ TP+LILFYSDWCFACLQ+EP +++L+DEL PLG+G  T H   E  LAR+LG
Sbjct: 177 VIVPKTFRTPYLILFYSDWCFACLQIEPTWRRLIDELEPLGLGLATAHAEKESALARKLG 236

Query: 200 VGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWRED 259
           + S LP + +  DGRTS +KE  FS+QK+V+F R K PYKLI  ++  N+D+FL  W  D
Sbjct: 237 IHS-LPCLVVTIDGRTSVYKESLFSIQKIVDFLRSKFPYKLISNINKNNIDSFLSGWI-D 294

Query: 260 NKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF 319
           N++ AL+F +   VRLRYL  AF +R  + FG +  ++ ++  +  ++K+  D D+LL+F
Sbjct: 295 NRIRALIFDKKESVRLRYLFVAFYYRDRVAFGFVQMEKPETELIMTKYKISVDLDTLLLF 354

Query: 320 KEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVC------PVKKLCVV 373
            E+ ++P AS++M  I   T+ +I  NN +L LPR+S+Q+MLD++C      P K+LC V
Sbjct: 355 NENSEKPMASVSMKDISSDTMHNIISNNKFLALPRLSNQAMLDSLCPPEWLRPQKRLCAV 414

Query: 374 LFSEDSPE-HDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSS-EISL 431
           L S+ +   HD +RH  R+ A ES +    + + YVF + QPEFV+AL++ E S  E  L
Sbjct: 415 LISQQNSHFHDLARHKFRQAALESSYSTERVRYTYVFKDTQPEFVSALSTGEGSPLEPLL 474

Query: 432 HIAAMWRMDYKKIKYGWLLG---DAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTAL 488
           HI  +WR D   +KY WL     +A  D   +N T+  L+  ++ L+      L Y   +
Sbjct: 475 HIVIIWRRDANHLKYEWLPTGWIEAAQDESQWNETRRNLEQTIQRLLRAS-EALPYAAVV 533

Query: 489 KEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLAMIMNHYMK 548
            E++DE+ Q    ++  +  + ++    SL+++ ILP VS+I T+++I      M++  K
Sbjct: 534 GELADEHAQGTVDKLIGKALLAVDYISDSLTKEQILPLVSVIATLMLIGAAGYGMSYLAK 593

Query: 549 LEEEEI 554
           LEE  I
Sbjct: 594 LEEASI 599

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012969|ref|XP_003690544.1| PREDICTED: dnaJ homolog subfamily C member 16-like [Apis florea]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/546 (41%), Positives = 348/546 (63%), Gaps = 14/546 (2%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           +PY+ LGV + A+LQEIRK YK LV EWHPDK + P A+ KF+++T+AY IL+D ERRK+
Sbjct: 57  NPYKILGVHKRATLQEIRKAYKNLVKEWHPDKTDHPGAENKFVEITKAYEILTDPERRKK 116

Query: 80  YDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEK 139
           +D  G T+    +     +  N++++P +++F+  F F ++  DISLF+K+S T+ +FE 
Sbjct: 117 FDNHGITEENISRQRRDNSHFNNVFDPLEELFARNFKFHYQNRDISLFYKMSITYRSFEN 176

Query: 140 NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLG 199
             IPK++ TP+LILFYSDWCFACLQ+EP +++L+DEL PLG+G  T H   E  LAR+LG
Sbjct: 177 VIIPKTFRTPYLILFYSDWCFACLQIEPTWRRLIDELEPLGLGLATAHAEKESALARKLG 236

Query: 200 VGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWRED 259
           + S LP + +  DGRTS +KE  FS+QK+V+F R K PYKLI  ++  N+D+FL  W  D
Sbjct: 237 IHS-LPCLVVTIDGRTSVYKESLFSIQKIVDFLRSKFPYKLISNINKNNIDSFLSGWI-D 294

Query: 260 NKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF 319
           N++ AL+F +   VRLRYL  AF +R  + FG +  ++ ++  +  ++K+  D D+LL+F
Sbjct: 295 NRIRALIFDKKESVRLRYLFVAFYYRDRVAFGFVQMEKPETELIVTKYKISVDLDTLLLF 354

Query: 320 KEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVC------PVKKLCVV 373
            E+ ++P AS++M  I   T+ ++  NN +L LPR+S+Q+MLD++C      P K+LC V
Sbjct: 355 NENSEKPMASVSMKDISSDTMHNVISNNKFLALPRLSNQAMLDSLCPPEWLRPQKRLCAV 414

Query: 374 LFSEDSPE-HDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSS-EISL 431
           L S+ +   HD +RH  R+ A ES +    + + YVF + QPEFV+AL++ E S  E  L
Sbjct: 415 LISQQNSHFHDLARHKFRQAALESSYSTERVRYTYVFKDTQPEFVSALSTGEGSPLEPLL 474

Query: 432 HIAAMWRMDYKKIKYGWLLG---DAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTAL 488
           HI  +WR D   +KY WL     +A  D   +N T+  L+  ++ L+      L Y   +
Sbjct: 475 HIVIIWRRDANHLKYEWLPTGWIEAAQDESQWNETRRNLEQTIQRLLRAS-EALPYAAVV 533

Query: 489 KEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLAMIMNHYMK 548
            E++DE+ Q    ++  +  + ++    SL+++ ILP VS+I T+++I      M++  K
Sbjct: 534 GELADEHAQGTVDKLIGKALLAVDYISDSLTKEQILPLVSVIATLMLIGAAGYGMSYLAK 593

Query: 549 LEEEEI 554
           LEE  I
Sbjct: 594 LEEASI 599

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173003|gb|EFN64145.1| DnaJ-like protein subfamily C member 16 [Camponotus floridanus]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/548 (42%), Positives = 354/548 (64%), Gaps = 18/548 (3%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           DPY+ LGV + A+LQEIRK YK LV EWHPDK + P A++KF+++T+AY +L+D ERR++
Sbjct: 52  DPYKILGVSKHATLQEIRKAYKHLVKEWHPDKTDHPMAEDKFVEITKAYELLTDPERRRK 111

Query: 80  YDLFGTTD-GFSGQDSASRNFHNHMYNPFDDVFSEGF-NFPFEEHDISLFHKLSTTHWNF 137
           +D  G TD G   Q     N H ++ +P +++F+  F  F ++  DI+LFHK+S T+ +F
Sbjct: 112 FDNHGITDEGIPRQRRD--NSHFNVLDPLEELFTSNFKQFHYQTRDITLFHKMSITYRSF 169

Query: 138 EKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARR 197
           E   IPKSY TP+LILFYSDWCFACLQVEP +++L+DEL PLG+G  T H   E  LARR
Sbjct: 170 ENVIIPKSYRTPYLILFYSDWCFACLQVEPTWRRLIDELEPLGLGLATAHAKKESTLARR 229

Query: 198 LGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWR 257
           LG+ S LP + +  DGRTS +KE   S+QK+VEF R +LPYKLI  +S TNV+ FL  W 
Sbjct: 230 LGIHS-LPCLVVTLDGRTSVYKESLLSIQKVVEFVRSRLPYKLISTISNTNVENFLSGW- 287

Query: 258 EDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLL 317
            DN++ AL+F++   +RLRYL+ +F +R  + FG +     ++ ++  ++K+ G+ D+LL
Sbjct: 288 TDNRIRALIFEKRDFIRLRYLLMSFYYRDRVAFGFVQVGIAETENITSKYKISGELDTLL 347

Query: 318 IFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVC------PVKKLC 371
           +F E+ ++P ASI+M  I   T+ ++  NN +L LPR+S+Q+MLD++C      P K+LC
Sbjct: 348 LFNENSEKPMASISMKDISSETMHNVIANNKFLVLPRLSNQAMLDSICPPEWLRPQKRLC 407

Query: 372 VVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSS-EI 429
            VL S ++SP HD +RH  R+ A ES +  + + + YVF + Q EFV+AL + E S  E 
Sbjct: 408 AVLISQQNSPLHDIARHKFRQVALESSYSTDRVRYAYVFKDTQSEFVSALAAGEGSPLEP 467

Query: 430 SLHIAAMWRMDYKKIKYGWLLG---DAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDT 486
            LHI  +WR D   +KY WL     +A  D + +N T+  L+  ++ L+      L Y  
Sbjct: 468 LLHIVIIWRRDANHLKYEWLPHGWIEATQDDRIWNETRRHLEKTIQKLLR-ATEALPYAA 526

Query: 487 ALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVSLIFTVIIIVVLAMIMNHY 546
            + E++DE+ Q    ++  R  + ++    +L+++ ILP +S++ T+++I      M++ 
Sbjct: 527 VVGELADEHAQGTVDKLIGRALLAVDYISDNLTKEQILPLISVLATLMLIGAAGYGMSYL 586

Query: 547 MKLEEEEI 554
           +KLEE  +
Sbjct: 587 VKLEEASV 594

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170052877|ref|XP_001862421.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167873643|gb|EDS37026.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/571 (39%), Positives = 342/571 (59%), Gaps = 37/571 (6%)

Query: 16  AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 75
           A + DPY+ LG+ + A+LQ+IRK YK+L  EWHPDK++ P A+ KF+++ +AY +LSD E
Sbjct: 50  AANTDPYKILGIQKHATLQDIRKAYKQLAKEWHPDKSDHPEAETKFVEIKQAYELLSDTE 109

Query: 76  RRKQYDLFGTT--DGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTT 133
           RRK YDL+G T  D    ++    + +    +PF+  F  G NF F + DISLFHKLS T
Sbjct: 110 RRKAYDLYGITNEDAHLYKERPDYSSYGRFPDPFEQFF--GHNFNFHDQDISLFHKLSIT 167

Query: 134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG 193
              +E N +PKS  TP +++FYSDWCF+C++    FKK++D L P GV F T++  +E  
Sbjct: 168 SKYYETNIVPKSRHTPQILMFYSDWCFSCMKAANSFKKMIDTLEPFGVTFATINAGHENQ 227

Query: 194 LARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFL 253
           L R++GV S LP + ++ D     +KE  ++ Q++VEF R KLPYKL+  +  ++VD+FL
Sbjct: 228 LVRKVGVHS-LPCVIMVLDEHNYVYKESVYNTQRVVEFIRQKLPYKLLPNIDDSSVDSFL 286

Query: 254 DNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDK 313
           + W  DN+V A++ +     RLRYLI AF  R  + FG +  + + +  + +R+K+    
Sbjct: 287 NGW-SDNRVRAIVMEPRTQPRLRYLITAFHFRERVAFGFVQLNSQKTQRIQERYKIHPSL 345

Query: 314 DSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPV------ 367
           D+LLIF E+  RP ASI+M+ IP  TL +I   N YL LPR+SSQSML+ VCP       
Sbjct: 346 DTLLIFNEEPSRPVASISMSDIPTATLNNIISVNKYLALPRLSSQSMLEGVCPAEWNRPR 405

Query: 368 KKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSS 427
           K+LCVVL +E+ P HD +RH +RR A ES +    + F Y++ EKQ EF++AL       
Sbjct: 406 KRLCVVLVTENIPTHDEARHAMRRIALESNYSPERVRFAYIYQEKQAEFIDALAEHSKLD 465

Query: 428 EISLHIAAMWRMDYKKIKYGWLLGDAVDDWK------------------------DYNTT 463
           E  L +  +WR D K +KY W+ G  ++                           +YN T
Sbjct: 466 ETVLKVVIIWRRDTKHVKYEWVHGATLERLDKSGGGEGGGAEGGSGAVENETHEINYNNT 525

Query: 464 KDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHI 523
           K ++D  ++ L+      L Y+  +K++ DE+ Q L VRI N+  M  E    +L ++HI
Sbjct: 526 KQKVDGAIQRLLRSS-EALTYEAEVKDLLDEHAQGLVVRILNKFLMAFEYMTDNLGQEHI 584

Query: 524 LPAVSLIFTVIIIVVLAMIMNHYMKLEEEEI 554
           LPA+S++ T+  I+    +M++ +++EEE I
Sbjct: 585 LPALSVVGTIAFILGAGYLMSYLVRIEEENI 615

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312380617|gb|EFR26558.1| hypothetical protein AND_07273 [Anopheles darlingi]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/572 (39%), Positives = 346/572 (60%), Gaps = 24/572 (4%)

Query: 2   LWYTFLLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKF 61
           L     + VL + C  S DPY TLGV R A+LQEIR+ YK+L  EWHPDK+  P A+++F
Sbjct: 13  LCLAVFVTVLLVQCD-SKDPYGTLGVERKATLQEIRRAYKQLAKEWHPDKSKHPEAEQRF 71

Query: 62  LQLTEAYNILSDAERRKQYDLFGTT--DGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPF 119
           +++ +AY +LSD+ERRK YD +G T  D    ++      ++   +PF+  F    NF F
Sbjct: 72  VEIKQAYELLSDSERRKAYDQYGITNEDAIVNRERPDYTTYSRFQDPFEH-FYGAHNFNF 130

Query: 120 EEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL 179
            + DISL+H+LS T   +E N +PKS  TP +++FY+DWCF C++    FKK++D L P 
Sbjct: 131 HDQDISLYHRLSITAKYYETNILPKSRQTPQILMFYADWCFDCMKAANSFKKMIDTLEPY 190

Query: 180 GVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK 239
           GV F T++  +E+ L RR GV S LP I ++ DG    ++E  F+ Q +V+F R K+PYK
Sbjct: 191 GVTFATINAGHEEQLVRRTGVHS-LPCIVMVLDGHNYIYRESVFNAQHLVDFIRQKMPYK 249

Query: 240 LIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQED 299
           L+ P++   +DAFL  W  DN+  AL+ +  +  RLRYLI AF  R  + FG +  +   
Sbjct: 250 LLTPVTDDTLDAFLAGW-TDNRARALILEPRVQPRLRYLITAFHFRERVAFGFVALNGHA 308

Query: 300 SSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQS 359
           +  + +RFK     D+LL+F E   RP ASI+M+ IP  TL ++   N +L LPR+SSQ 
Sbjct: 309 TRHIQERFKNHPSLDTLLLFNEFPARPVASISMSDIPTLTLNNVIGVNKFLVLPRLSSQP 368

Query: 360 MLDAVCPV------KKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQ 413
           +LD VCPV      K+LCVVL +E++  HD +R  LRR A ES F    + F Y++ EKQ
Sbjct: 369 VLDGVCPVEWNRPRKRLCVVLVTENTSLHDGARQMLRRIALESSFSRERVRFAYIYREKQ 428

Query: 414 PEFVNALTSPED-SSEISLHIAAMWRMDYKKIKYGWL--------LGDAVDDWKD--YNT 462
            EF+ AL+       +  L +  +WR D K I+Y WL           A ++  D  +N+
Sbjct: 429 DEFIGALSQNNQLLQDALLKLVILWRRDTKHIRYEWLHEVVLQVDRASAENETHDQFFNS 488

Query: 463 TKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQH 522
           TK ++D+ ++ L+      L Y+  +K++ DE+ Q L +R+ NR+ + IE    ++ ++H
Sbjct: 489 TKHKVDSAIQRLLRTS-EALSYEAEVKDLLDEHAQCLAIRMLNRLLLAIEFMTDNVGQEH 547

Query: 523 ILPAVSLIFTVIIIVVLAMIMNHYMKLEEEEI 554
           ILPA+S+I T+  I ++  +M++ ++LEEE+I
Sbjct: 548 ILPALSVIGTIAFIFIIGYLMSYLLRLEEEDI 579

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	554
FB|FBgn0058178	780	CG40178 [Drosophila melanogast	0.965	0.685	0.320	6.2e-85
UNIPROTKB|Q5TDG9	595	DNAJC16 "DnaJ homolog subfamil	0.960	0.894	0.306	2.8e-66
UNIPROTKB|Q5TDH4	655	DNAJC16 "DnaJ homolog subfamil	0.960	0.812	0.306	2.8e-66
UNIPROTKB|Q9Y2G8	782	DNAJC16 "DnaJ homolog subfamil	0.960	0.680	0.306	2.8e-66
UNIPROTKB|F1PZP2	782	DNAJC16 "Uncharacterized prote	0.960	0.680	0.306	7.4e-66
RGD|1359395	771	Dnajc16 "DnaJ (Hsp40) homolog,	0.967	0.695	0.303	7.4e-66
UNIPROTKB|A7MBJ0	782	DNAJC16 "DNAJC16 protein" [Bos	0.960	0.680	0.304	5.2e-65
UNIPROTKB|F1SUU5	782	DNAJC16 "Uncharacterized prote	0.960	0.680	0.301	8.5e-65
UNIPROTKB|Q5ZKZ4	777	DNAJC16 "DnaJ homolog subfamil	0.945	0.674	0.312	1.1e-64
MGI|MGI:2442146	772	Dnajc16 "DnaJ (Hsp40) homolog,	0.967	0.694	0.295	3.7e-64

FB|FBgn0058178 CG40178 [Drosophila melanogaster (taxid:7227)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 181/564 (32%), Positives = 319/564 (56%)

Query:     7 LLNVLFINCAVSL-DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLT 65
             L    +I+   SL DPY  LG+ + A+  EIR+ YK L  +WHPDK  +    EKF+Q+ 
Sbjct:    16 LCTTSYIHVCSSLNDPYAILGINKKATTYEIREAYKELAKKWHPDKVKNDYGAEKFIQIK 75

Query:    66 EAYNILSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPF-----DDVFSEGFNFPFE 120
              AY IL+D +RR+ +D +G +D  + Q    ++ ++  YN F     DD F + F+    
Sbjct:    76 LAYEILADLDRRRIFDRYGVSD-INSQYFQKKHDYSE-YNRFTLNQNDDDFGQRFDI--- 130

Query:   121 EHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG 180
             + DI+ + KLS T   FEK  + K+    H+++FY+DWCF C ++   FKK+++ L P+G
Sbjct:   131 KQDIAFYQKLSITENYFEKMILSKNAKKVHVVMFYNDWCFKCTRIVDAFKKILELLQPIG 190

Query:   181 VGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKL 240
             + F TV+  +E+ + R+ G   ++PQ+ L+ D +   +++ SF+ QK+VEF R K+P+ +
Sbjct:   191 INFATVNAVHEESVFRKCGA-REVPQLVLILDNQYFLYRDHSFTPQKVVEFIRKKIPFNV 249

Query:   241 IVPLSATNVDAFLDNWREDNKVHALLFQ-RSLPVRLRYLINAFKHRTTIVFGVIVYDQED 299
                +   N + FL  W  DN+  AL+F+ RSL  RLRYL+ AF+    + FG +    +D
Sbjct:   250 FKRIEHDNFNDFLGGW-SDNRARALIFEPRSL-TRLRYLLTAFEFYDRVAFGFVNTISKD 307

Query:   300 SSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQS 359
             SS++  RFKV    D+L++F ED    +AS+ M  IP   L ++   N +L  PRISSQ+
Sbjct:   308 SSNIITRFKVNTSLDTLILFNEDTTTFTASVCMEEIPNHILVNMVSTNQFLAFPRISSQN 367

Query:   360 MLDAVCPV------KKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQ 413
             ++++VCP       K LCV+L +E++ + D  R  LR  A    +    + F Y+F E Q
Sbjct:   368 IMESVCPTEWNRQRKHLCVILITENNRKKDFERVALRNIALSVGYNSEKVRFAYIFKESQ 427

Query:   414 PEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLL-----GDAVDDWKDYNTTKDRLD 468
             P+F+ +++       + + I  +WR D K+IKY W+      G++  +    N+TKD++ 
Sbjct:   428 PDFIKSISKGSFKDSL-IEIVIIWRRDKKRIKYNWVYVAKQNGNSSPEHL-MNSTKDQIS 485

Query:   469 AGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQHILPAVS 528
               ++ L+ +    L Y+  ++ + +E+ Q +  +  ++    ++    ++  +H+L   S
Sbjct:   486 NAVKKLLKNS-EALCYEAIVENLFNEHSQGILTKWISQFLYVVDYLSDNIEDEHLLAVFS 544

Query:   529 LIFTVIIIVVLAMIMNHYMKLEEE 552
             L+ T+  +  +  ++ +++++EE+
Sbjct:   545 LLGTIAFMFTVGYVLIYFVRVEEK 568

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|Q5TDG9 DNAJC16 "DnaJ homolog subfamily C member 16" [Homo sapiens (taxid:9606)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 173/564 (30%), Positives = 282/564 (50%)

Query:     7 LLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTE 66
             L+ +L I  A+  DPY  LGV RTAS  +I+K YK+L  EWHPDKN DP A++KF+Q+++
Sbjct:    16 LVLILQILSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISK 75

Query:    67 AYNILSDAERRKQYDLFGTT---DGFSGQDSAS----RNFHNHMYNPFDDVFSEGFNFPF 119
             AY ILS+ E+R  YD +G      G+  Q        R+FH + Y  FD+ F   F+FPF
Sbjct:    76 AYEILSNEEKRSNYDQYGDAGENQGYQKQQQQREYRFRHFHENFY--FDESF---FHFPF 130

Query:   120 E-EHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP 178
               E   S+  K      ++    +P S+  P+LI   SDWCF+C+ +EP++K+++ EL  
Sbjct:   131 NSERRDSIDEKYLLHFSHYVNEVVPDSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEE 190

Query:   179 LGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPY 238
             LGVG   VH   E+ LA  LG  S  P I  + +G+ SFF       + + +F    LP 
Sbjct:   191 LGVGIGVVHAGYERRLAHHLGAHST-PSILGIINGKISFFHNAVVR-ENLRQFVESLLPG 248

Query:   239 KLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQE 298
              L+  ++  N   FL  W+++NK H LLF ++  V L Y + AF ++  + FG +     
Sbjct:   249 NLVEKVTNKNYVRFLSGWQQENKPHVLLFDQTPIVPLLYKLTAFAYKDYLSFGYVYVGLR 308

Query:   299 DSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQ 358
              +  + +R+ +     +LL+FKE  +RP+  I    +    + D    N YL   R++SQ
Sbjct:   309 GTEEMTRRYNINIYAPTLLVFKEHINRPADVIQARGMKKQIIDDFITRNKYLLAARLTSQ 368

Query:   359 SMLDAVCPVK------KLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEK 412
              +   +CPVK      K CVVL + ++ +          FA  +    + + F++V+  +
Sbjct:   369 KLFHELCPVKRSHRQRKYCVVLLTAETTKLSKPFEAFLSFALAN--TQDTVRFVHVYSNR 426

Query:   413 QPEFVNALTSPEDSSEISLHIAAMWRMDYK-KIKYGWLLGDAVDDWKDYNTTKDRLDAGL 471
             Q EF + L    ++ +    ++ + R +   ++ Y  L     D W    + K  L   L
Sbjct:   427 QQEFADTLLPDSEAFQGKSAVSILERRNTAGRVVYKTL----EDPWIGSESDKFILLGYL 482

Query:   472 RSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQH---ILPAVS 528
               L  DP   L  +  L +++DE      +R F     +I     S+   +   ++P +S
Sbjct:   483 DQLRKDPAL-LSSEAVLPDLTDELAPVFLLRWFYSASDYISDCWDSIFHNNWREMMPLLS 541

Query:   529 LIFTVIIIVVLAMIMNHYMKLEEE 552
             LIF+ + I+   +I+  +    +E
Sbjct:   542 LIFSALFILFGTVIVQAFSDSNDE 565

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|Q5TDH4 DNAJC16 "DnaJ homolog subfamily C member 16" [Homo sapiens (taxid:9606)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 173/564 (30%), Positives = 282/564 (50%)

Query:     7 LLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTE 66
             L+ +L I  A+  DPY  LGV RTAS  +I+K YK+L  EWHPDKN DP A++KF+Q+++
Sbjct:    16 LVLILQILSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISK 75

Query:    67 AYNILSDAERRKQYDLFGTT---DGFSGQDSAS----RNFHNHMYNPFDDVFSEGFNFPF 119
             AY ILS+ E+R  YD +G      G+  Q        R+FH + Y  FD+ F   F+FPF
Sbjct:    76 AYEILSNEEKRSNYDQYGDAGENQGYQKQQQQREYRFRHFHENFY--FDESF---FHFPF 130

Query:   120 E-EHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP 178
               E   S+  K      ++    +P S+  P+LI   SDWCF+C+ +EP++K+++ EL  
Sbjct:   131 NSERRDSIDEKYLLHFSHYVNEVVPDSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEE 190

Query:   179 LGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPY 238
             LGVG   VH   E+ LA  LG  S  P I  + +G+ SFF       + + +F    LP 
Sbjct:   191 LGVGIGVVHAGYERRLAHHLGAHST-PSILGIINGKISFFHNAVVR-ENLRQFVESLLPG 248

Query:   239 KLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQE 298
              L+  ++  N   FL  W+++NK H LLF ++  V L Y + AF ++  + FG +     
Sbjct:   249 NLVEKVTNKNYVRFLSGWQQENKPHVLLFDQTPIVPLLYKLTAFAYKDYLSFGYVYVGLR 308

Query:   299 DSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQ 358
              +  + +R+ +     +LL+FKE  +RP+  I    +    + D    N YL   R++SQ
Sbjct:   309 GTEEMTRRYNINIYAPTLLVFKEHINRPADVIQARGMKKQIIDDFITRNKYLLAARLTSQ 368

Query:   359 SMLDAVCPVK------KLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEK 412
              +   +CPVK      K CVVL + ++ +          FA  +    + + F++V+  +
Sbjct:   369 KLFHELCPVKRSHRQRKYCVVLLTAETTKLSKPFEAFLSFALAN--TQDTVRFVHVYSNR 426

Query:   413 QPEFVNALTSPEDSSEISLHIAAMWRMDYK-KIKYGWLLGDAVDDWKDYNTTKDRLDAGL 471
             Q EF + L    ++ +    ++ + R +   ++ Y  L     D W    + K  L   L
Sbjct:   427 QQEFADTLLPDSEAFQGKSAVSILERRNTAGRVVYKTL----EDPWIGSESDKFILLGYL 482

Query:   472 RSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQH---ILPAVS 528
               L  DP   L  +  L +++DE      +R F     +I     S+   +   ++P +S
Sbjct:   483 DQLRKDPAL-LSSEAVLPDLTDELAPVFLLRWFYSASDYISDCWDSIFHNNWREMMPLLS 541

Query:   529 LIFTVIIIVVLAMIMNHYMKLEEE 552
             LIF+ + I+   +I+  +    +E
Sbjct:   542 LIFSALFILFGTVIVQAFSDSNDE 565

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|Q9Y2G8 DNAJC16 "DnaJ homolog subfamily C member 16" [Homo sapiens (taxid:9606)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 173/564 (30%), Positives = 282/564 (50%)

Query:     7 LLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTE 66
             L+ +L I  A+  DPY  LGV RTAS  +I+K YK+L  EWHPDKN DP A++KF+Q+++
Sbjct:    16 LVLILQILSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISK 75

Query:    67 AYNILSDAERRKQYDLFGTT---DGFSGQDSAS----RNFHNHMYNPFDDVFSEGFNFPF 119
             AY ILS+ E+R  YD +G      G+  Q        R+FH + Y  FD+ F   F+FPF
Sbjct:    76 AYEILSNEEKRSNYDQYGDAGENQGYQKQQQQREYRFRHFHENFY--FDESF---FHFPF 130

Query:   120 E-EHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP 178
               E   S+  K      ++    +P S+  P+LI   SDWCF+C+ +EP++K+++ EL  
Sbjct:   131 NSERRDSIDEKYLLHFSHYVNEVVPDSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEE 190

Query:   179 LGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPY 238
             LGVG   VH   E+ LA  LG  S  P I  + +G+ SFF       + + +F    LP 
Sbjct:   191 LGVGIGVVHAGYERRLAHHLGAHST-PSILGIINGKISFFHNAVVR-ENLRQFVESLLPG 248

Query:   239 KLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQE 298
              L+  ++  N   FL  W+++NK H LLF ++  V L Y + AF ++  + FG +     
Sbjct:   249 NLVEKVTNKNYVRFLSGWQQENKPHVLLFDQTPIVPLLYKLTAFAYKDYLSFGYVYVGLR 308

Query:   299 DSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQ 358
              +  + +R+ +     +LL+FKE  +RP+  I    +    + D    N YL   R++SQ
Sbjct:   309 GTEEMTRRYNINIYAPTLLVFKEHINRPADVIQARGMKKQIIDDFITRNKYLLAARLTSQ 368

Query:   359 SMLDAVCPVK------KLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEK 412
              +   +CPVK      K CVVL + ++ +          FA  +    + + F++V+  +
Sbjct:   369 KLFHELCPVKRSHRQRKYCVVLLTAETTKLSKPFEAFLSFALAN--TQDTVRFVHVYSNR 426

Query:   413 QPEFVNALTSPEDSSEISLHIAAMWRMDYK-KIKYGWLLGDAVDDWKDYNTTKDRLDAGL 471
             Q EF + L    ++ +    ++ + R +   ++ Y  L     D W    + K  L   L
Sbjct:   427 QQEFADTLLPDSEAFQGKSAVSILERRNTAGRVVYKTL----EDPWIGSESDKFILLGYL 482

Query:   472 RSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQH---ILPAVS 528
               L  DP   L  +  L +++DE      +R F     +I     S+   +   ++P +S
Sbjct:   483 DQLRKDPAL-LSSEAVLPDLTDELAPVFLLRWFYSASDYISDCWDSIFHNNWREMMPLLS 541

Query:   529 LIFTVIIIVVLAMIMNHYMKLEEE 552
             LIF+ + I+   +I+  +    +E
Sbjct:   542 LIFSALFILFGTVIVQAFSDSNDE 565

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PZP2 DNAJC16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 173/564 (30%), Positives = 283/564 (50%)

Query:     7 LLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTE 66
             L+ +L I  A+  DPY  LGV RTAS  +I+K YK+L  EWHPDKN DP A++KF+Q+++
Sbjct:    16 LVLILQILSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISK 75

Query:    67 AYNILSDAERRKQYDLFGTT---DGFSGQDSAS----RNFHNHMYNPFDDVFSEGFNFPF 119
             AY ILS+ E+R  YD +G      G+  Q        R+FH + Y  FD+ F   F+FPF
Sbjct:    76 AYEILSNEEKRSNYDHYGDAGENQGYQKQQQQREYRFRHFHENFY--FDESF---FHFPF 130

Query:   120 E-EHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP 178
               E   S+  K      ++    +P S+  P+LI   SDWCF+C+ +EP++K+++ EL  
Sbjct:   131 NSERRGSIDEKYLLHFSHYVNEVVPDSFKKPYLIKITSDWCFSCIHIEPVWKEVVQELER 190

Query:   179 LGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPY 238
             LGVG   VH   E+ LA  LG  S  P I  + +G+ SFF       + + +F    LP 
Sbjct:   191 LGVGIGVVHAGYERRLAHHLGAHST-PSILGIINGKISFFHNAVVR-ENLRQFVESLLPG 248

Query:   239 KLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQE 298
              L+  ++  N   FL  W+++NK H LLF +   V L Y + AF ++  + FG +     
Sbjct:   249 NLVEKVTNKNYIRFLSGWQQENKPHVLLFDQMPVVPLLYKLTAFAYKDYLTFGYVRTGLR 308

Query:   299 DSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQ 358
             ++  + +++ V     ++LIFKE  ++P+ +I    +    + D    N YL   R++SQ
Sbjct:   309 EAEEMKRQYNVNVYAPTILIFKEHINKPADAIQARGMKKQVIDDFITQNKYLLAARLTSQ 368

Query:   359 SMLDAVCPVK------KLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEK 412
              +   +CPVK      K CVVL + ++ +          FA  +    + + F++V+  +
Sbjct:   369 RLFHELCPVKRSHRQRKYCVVLLTAEAAKLSKPFDAFLSFALAN--TKDTVRFVHVYSNR 426

Query:   413 QPEFVNALTSPEDSSEISLHIAAMWRMDYK-KIKYGWLLGDAVDDWKDYNTTKDRLDAGL 471
             Q EF N L    D+ +    ++ + R     ++ Y  L  +A   W    + K  L   L
Sbjct:   427 QQEFANTLVPDSDTFQGKSAVSILERRTTGGRVVYKTL--EA--PWTGSESDKLTLLGYL 482

Query:   472 RSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQH---ILPAVS 528
               L  DP   L  +  L +++DE      +R F     +I     S+   +   ++P +S
Sbjct:   483 DQLRRDPAL-LSSEAVLPDLTDELAPIFLLRWFYSASDYISDCWDSIFHNNWREMMPLLS 541

Query:   529 LIFTVIIIVVLAMIMNHYMKLEEE 552
             L+F+ + I+   +I+  +    +E
Sbjct:   542 LVFSALFILFGTVIVQAFSDSNDE 565

GO:0045454 "cell redox homeostasis" evidence=IEA

RGD|1359395 Dnajc16 "DnaJ (Hsp40) homolog, subfamily C, member 16" [Rattus norvegicus (taxid:10116)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 172/567 (30%), Positives = 287/567 (50%)

Query:     3 WYTFLLNVLFINC--AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEK 60
             W   ++ VL +    A+  DPY  LGV RTAS  +I+K YK+L  EWHPDKN DP A++K
Sbjct:    10 WQFLIVLVLILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDK 69

Query:    61 FLQLTEAYNILSDAERRKQYDLFGTT---DGFSGQ-DSASRNFHNHMYNPFDDVFSEGFN 116
             F+Q+++AY ILS+ E+R  YD +G      G+  Q +   R+FH + Y  FD+ F   F+
Sbjct:    70 FIQISKAYEILSNEEKRTNYDHYGDAGENQGYQQQREYRFRHFHENFY--FDESF---FH 124

Query:   117 FPFE-EHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDE 175
             FPF  E   S+  K      ++    +P S+  P+LI   SDWCF+C+ +EPI+K+++ E
Sbjct:   125 FPFNSERRDSIDEKYLLHFSHYVNEVVPDSFKKPYLIKITSDWCFSCIHIEPIWKEVVQE 184

Query:   176 LSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLK 235
             L  LGVG   VH   E+ LA  LG  S  P I  + +G+ SFF       + + +F    
Sbjct:   185 LEGLGVGIGVVHAGYERRLAHHLGAHST-PSILGIINGKISFFHNAVVH-ENLRQFVESL 242

Query:   236 LPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVY 295
             LP  L+  ++  N   FL  W+++NK HALLF ++    L Y + AF ++  + FG +  
Sbjct:   243 LPGNLVEKVTNKNYVRFLSGWQQENKPHALLFGQTPAAPLLYKLTAFAYKDYVSFGYVYV 302

Query:   296 DQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRI 355
                    + +++ V     ++LIFKE  ++P+ +I    +    ++D    N YL   R+
Sbjct:   303 GLRGVEEMTRQYNVNIYAPTMLIFKEHINKPADAIQARGLKKQVIEDFITQNKYLLASRL 362

Query:   356 SSQSMLDAVCPVK------KLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVF 409
             +SQ +   +CPVK      K CVVL + ++ +          FA  +    + + F++V+
Sbjct:   363 TSQKLFHELCPVKRSHRQRKYCVVLLTAEANKLSKPFDAFLSFALAN--TQDTVRFVHVY 420

Query:   410 IEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDD-WKDYNTTKDRLD 468
               +Q EF + L    ++ +    ++ + R +      G ++   ++D W    + K  L 
Sbjct:   421 SSRQQEFASTLLPDIEAFQGKSGVSILERRNTA----GRVVFKTLEDPWTGSESDKFVLL 476

Query:   469 AGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQH---ILP 525
               L  L  DP   L  +  L +++DE      +R    +  ++    +SL   +   ++P
Sbjct:   477 GYLDQLRKDPAF-LSSEAVLPDLTDELAPVFLLRWLYSVSDYLSDFWESLLHSNWREMMP 535

Query:   526 AVSLIFTVIIIVVLAMIMNHYMKLEEE 552
              +SLIF+ + I+   +I+  +    EE
Sbjct:   536 LLSLIFSALFILFGTVIVQAFSDSNEE 562

GO:0016021 "integral to membrane" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|A7MBJ0 DNAJC16 "DNAJC16 protein" [Bos taurus (taxid:9913)]

 Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
 Identities = 172/564 (30%), Positives = 279/564 (49%)

Query:     7 LLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTE 66
             L+ +L I  A+  DPY  LGV RTAS  +I+K YK+L  EWHPDKN DP A++KF+Q+++
Sbjct:    16 LVLILQILSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISK 75

Query:    67 AYNILSDAERRKQYDLFGT---TDGFSGQDSAS----RNFHNHMYNPFDDVFSEGFNFPF 119
             AY ILS+ E+R  YD +G    + G+  Q        R+FH + Y  FD+ F   F+FPF
Sbjct:    76 AYEILSNEEKRSHYDHYGDAGESQGYQKQQQQREYRFRHFHENFY--FDESF---FHFPF 130

Query:   120 E-EHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP 178
               E   S+  K      ++    +P S+  P+LI   SDWCF+C+ +EP++K+ + EL  
Sbjct:   131 NSERRDSIDEKYLLHFSHYVNEVVPDSFKKPYLIKITSDWCFSCIHIEPVWKEAVQELEG 190

Query:   179 LGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPY 238
             LGVG   VH   E+ LA  LG  S  P I  + +G+ SFF     S + + +F    LP 
Sbjct:   191 LGVGIGVVHAGYERRLAHHLGAHST-PSILGIINGKVSFFHNAVVS-ENLWQFVESLLPG 248

Query:   239 KLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQE 298
              L+  ++  N   FL  W+++NK   LLF +   V L Y + AF ++  + FG +     
Sbjct:   249 NLVEKVTNKNYVRFLSGWQQENKPRVLLFDQMPTVPLLYKLTAFAYKDYLSFGYVYVGLR 308

Query:   299 DSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQ 358
              +  + +++ V     ++LIFKE   +P+  I    +    + D    N YL   R++SQ
Sbjct:   309 GAEEMTRQYDVNVYTPTILIFKEHIHKPADVIQARGMKRQVIDDFITQNKYLLAARLTSQ 368

Query:   359 SMLDAVCPVK------KLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEK 412
              +   +CPVK      K CVVL + ++ +          FA  +    + + F++V+  +
Sbjct:   369 KLFHELCPVKRSHRQRKYCVVLLTAEATKLSKPFEAFLSFALAN--TQDTVRFVHVYSNR 426

Query:   413 QPEFVNALTSPEDSSEISLHIAAMWRMDYK-KIKYGWLLGDAVDDWKDYNTTKDRLDAGL 471
             Q EF + L    D+ +    ++ + R +   ++ Y  L     D W    + K  L   L
Sbjct:   427 QQEFASTLLPDSDTFQGKSAVSILERRNTAGRVVYKTL----EDPWTGSESDKFILLGYL 482

Query:   472 RSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQH---ILPAVS 528
               L  DP   L  +  L +++DE      +R       +I     S+   +   ++P +S
Sbjct:   483 DQLRKDPAL-LSSEAVLPDLTDELAPIFLLRWLYSASDYISDCWDSIFHNNWREMMPLLS 541

Query:   529 LIFTVIIIVVLAMIMNHYMKLEEE 552
             L+F+ + I+   +I+  +    EE
Sbjct:   542 LVFSALFILFGTVIVQAFSDSNEE 565

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|F1SUU5 DNAJC16 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 170/564 (30%), Positives = 279/564 (49%)

Query:     7 LLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTE 66
             L+ +L I  A+  DPY  LGV RTAS  +I+K YK+L  EWHPDKN DP A++KF+Q+++
Sbjct:    16 LVLILQILSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISK 75

Query:    67 AYNILSDAERRKQYDLFGTT---DGFSGQDSAS----RNFHNHMYNPFDDVFSEGFNFPF 119
             AY ILS+ E+R  YD +G      G+  Q        R+FH + Y  FD+ F   F+FPF
Sbjct:    76 AYEILSNEEKRSHYDHYGDAGENQGYQKQQQQREYHFRHFHENFY--FDESF---FHFPF 130

Query:   120 E-EHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP 178
               E   S+  K      ++    +P S+  P+LI   SDWCF+C+ +EP++K+++ EL  
Sbjct:   131 NSERRDSIDEKYLLHFSHYVNEVVPDSFKKPYLIKITSDWCFSCIHIEPVWKEVVQELEG 190

Query:   179 LGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPY 238
             LGVG   VH   E+ LA  LG  S  P I  + +G+ SFF       + + +F    LP 
Sbjct:   191 LGVGIGVVHAGYERRLAHHLGAHST-PSILGIINGKISFFHNAVVR-ENLRQFVESLLPG 248

Query:   239 KLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQE 298
              L+  ++  N   FL  W+++NK H LLF +   V L Y + AF ++  + FG +     
Sbjct:   249 NLVEKVTNKNYVRFLSGWQQENKPHVLLFDQMPAVPLLYKLTAFAYKDYLSFGYVYVGLR 308

Query:   299 DSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQ 358
              +  + +++ V     ++LIFKE   +P+  I    +    + D    N YL   R++SQ
Sbjct:   309 GAEEMARQYNVNVYTPTILIFKEHIHKPADVIQARGVKKQVIDDFITQNKYLLAARLTSQ 368

Query:   359 SMLDAVCPVK------KLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEK 412
              +   +CPVK      K CVVL + ++ +          FA  +    + + F++V+  +
Sbjct:   369 KVFHELCPVKRSHRQRKYCVVLLTAEATKLSQPFEAFLSFALAN--TQDTVRFVHVYSNR 426

Query:   413 QPEFVNALTSPEDSSEISLHIAAMWRMDYK-KIKYGWLLGDAVDDWKDYNTTKDRLDAGL 471
             Q EF + L    ++ +    ++ + R +   ++ Y  L     D W    + K  L   L
Sbjct:   427 QQEFADTLLPDSNAFQGKSAVSILERRNTAGRVVYKTL----EDPWTGSESDKFILLGYL 482

Query:   472 RSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQH---ILPAVS 528
               L  DP   L  +  L +++DE      +R       +I     S+   +   ++P +S
Sbjct:   483 DQLRKDPAL-LSSEAVLPDLTDELAPIFLLRWLYSASDYISDCWDSIFHNNWREMMPLLS 541

Query:   529 LIFTVIIIVVLAMIMNHYMKLEEE 552
             L+F+ + I+   +I+  +    +E
Sbjct:   542 LVFSALFILFGTVIIQAFSDSNDE 565

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|Q5ZKZ4 DNAJC16 "DnaJ homolog subfamily C member 16" [Gallus gallus (taxid:9031)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 174/557 (31%), Positives = 278/557 (49%)

Query:     7 LLNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTE 66
             LL +L    A   DPY  LGV R++S  +I+K YKRL  +WHPDKN DP A++KF+Q+++
Sbjct:    15 LLLLLAAQAAPERDPYRVLGVGRSSSQADIKKAYKRLARQWHPDKNKDPGAEDKFIQISK 74

Query:    67 AYNILSDAERRKQYDLFGT---TDGFSG-QDSASRNFHNHMYNPFDDVFSEGFNFPF--E 120
             AY ILS+ E+R  +D +G    + G+S  Q     +FH   Y  FD+ F   F+FPF  E
Sbjct:    75 AYEILSNEEKRANFDRYGDAGESQGYSQHQQRQFHHFHEGFY--FDESF---FHFPFNSE 129

Query:   121 EHDIS-LFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL 179
               D S   + L  +H+  E   +P S+  P+LI   SDWCF+C+ +EP++K++  EL  L
Sbjct:   130 RRDTSDEKYLLHFSHYINE--IVPDSFKKPYLIKITSDWCFSCIHIEPVWKEVAQELEAL 187

Query:   180 GVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK 239
             GVG   VH   E+ LA  LG  S  P I  L +G+ +FF       + + +F    LP  
Sbjct:   188 GVGIGVVHAGYERRLAHHLGAHST-PSILGLINGKITFFHSAVVR-ENLRQFVENLLPGN 245

Query:   240 LIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQED 299
             L+  ++  N   FL NW+++NK H LLF     V L Y + AF +R  + FG +      
Sbjct:   246 LVEKITDKNYIRFLSNWKKENKPHVLLFDHMPVVPLLYKLTAFAYRDYLSFGYVYVGLRG 305

Query:   300 SSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQS 359
             +  +  ++ +     +L+IFKE  D+P+       +    + D    N +L   R+++Q 
Sbjct:   306 TEELSSQYNINVYTPTLMIFKEHIDKPADVAQARDMKKQLIDDFLSQNKFLMAARLTNQR 365

Query:   360 MLDAVCPVKKL------CVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQ 413
             +   +CPVKK       CVVL + +  +   +      FA  +    + + F +++ ++Q
Sbjct:   366 LFQELCPVKKSHRQRKHCVVLLTGEGDKFADAYEAFLTFAVAN--TKDTLRFAHIYNDRQ 423

Query:   414 PEFVNALTSPEDSSEISLHIAAMWRMDYK-KIKYGWLLGDAVDDWKDYNTTKDRLDAGLR 472
             PEF +AL   E+       +  + R +   KI Y  L     + W+  N     L   L 
Sbjct:   424 PEFADALLMDEEKYRGKSAVVILERRNNAGKIAYKTL----EEAWQGSNEDNFILLDLLD 479

Query:   473 SLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQH---ILPAVSL 529
              L  DP   L  +T L +++DE      +R F     +I     SL   +   ++P +SL
Sbjct:   480 QLRTDP-GLLSSETVLADLNDELAPMFLIRWFYSTLDYILDCWDSLFHSNWREMMPLLSL 538

Query:   530 IFTVIIIVVLAMIMNHY 546
             +F+ + I+   +I+  +
Sbjct:   539 LFSALFILFGTVIVQAF 555

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2442146 Dnajc16 "DnaJ (Hsp40) homolog, subfamily C, member 16" [Mus musculus (taxid:10090)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 168/568 (29%), Positives = 286/568 (50%)

Query:     3 WYTFLLNVLFINC--AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEK 60
             W   ++ VL +    A+  DPY  LGV RTAS  +I+K YK+L  EWHPDKN DP A+++
Sbjct:    10 WRFLMVLVLILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDR 69

Query:    61 FLQLTEAYNILSDAERRKQYDLFGTT---DGFSGQ--DSASRNFHNHMYNPFDDVFSEGF 115
             F+Q+++AY ILS+ E+R  YD +G      G+  Q  +   R+FH + Y  FD+ F   F
Sbjct:    70 FIQISKAYEILSNEEKRTNYDHYGDAGENQGYQKQQREHRFRHFHENFY--FDESF---F 124

Query:   116 NFPFEEHDISLFHKLSTTHWNFEKNYI-PKSYTTPHLILFYSDWCFACLQVEPIFKKLMD 174
             +FPF         +    H++   N + P+S+  P+LI   SDWCF+C+ +EP++K+++ 
Sbjct:   125 HFPFNAERRDSGDEKYLLHFSHYVNEVLPESFKRPYLIKITSDWCFSCIHIEPVWKEVVQ 184

Query:   175 ELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRL 234
             EL  LGVG   VH   E+ LA  LG  S  P I  +  G+ +FF       + + +F   
Sbjct:   185 ELEGLGVGIGVVHAGYERRLAHHLGAHST-PSILGVISGKITFFHNAVVH-ENLRQFVES 242

Query:   235 KLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIV 294
              LP  L+  ++  N   FL  W+++NK HALLF ++  V L Y + AF ++  + FG + 
Sbjct:   243 LLPGNLVEKVTNKNYVRFLSGWQQENKPHALLFGQTPAVPLMYKLTAFAYKDYVSFGYVY 302

Query:   295 YDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPR 354
                     + +++ V     ++LIFKE  ++P+  I    +    ++D    N YL   R
Sbjct:   303 VGLRGVEEMTRQYNVNLYTPTMLIFKEHINKPADVIQARGLKKQVIEDFIAQNKYLLASR 362

Query:   355 ISSQSMLDAVCPVK------KLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYV 408
             ++SQ +   +CPVK      K CVVL + ++ +          FA  +    + + F++V
Sbjct:   363 LTSQRLFHELCPVKRSHRQRKYCVVLLTAETNKVSKPFEAFLSFALAN--TQDTVRFVHV 420

Query:   409 FIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDD-WKDYNTTKDRL 467
             +  +Q EF + L    ++ +    ++ + R +      G ++   ++D W    + K  L
Sbjct:   421 YSNRQQEFASTLLPDMEAFQGKSGVSILERRNTA----GRVVFKTLEDPWTGSESDKFVL 476

Query:   468 DAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIFMHIEMAQQSLSRQH---IL 524
                L  L  DP   L  +  L +++DE      +R    +  ++    +SL   +   ++
Sbjct:   477 LGYLDQLRKDPAF-LSSEAVLPDLTDELAPVFFLRWLYSVSDYLSDFWESLLHSNWREMM 535

Query:   525 PAVSLIFTVIIIVVLAMIMNHYMKLEEE 552
             P +SLIF+ + I+   +++  +    EE
Sbjct:   536 PLLSLIFSALFILFGTVMVQAFSDSNEE 563

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZKZ4	DJC16_CHICK	No assigned EC number	0.3179	0.8501	0.6061	yes	N/A
Q5FVM7	DJC16_RAT	No assigned EC number	0.3033	0.9675	0.6952	yes	N/A
Q9Y2G8	DJC16_HUMAN	No assigned EC number	0.3028	0.9494	0.6726	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	554
cd02963	111	cd02963, TRX_DnaJ, TRX domain, DnaJ domain contain	4e-36
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	8e-30
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-29
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	9e-26
pfam00226	63	pfam00226, DnaJ, DnaJ domain	2e-25
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	2e-24
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	9e-24
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	3e-23
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	1e-22
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	7e-22
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	1e-21
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	2e-21
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	2e-21
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	5e-21
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	5e-21
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	5e-20
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	5e-20
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	6e-20
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	1e-19
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	3e-19
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	3e-19
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	5e-19
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	2e-18
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	2e-18
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	1e-17
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	2e-17
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	3e-17
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	3e-17
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	5e-17
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	7e-17
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	8e-16
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	1e-15
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	1e-14
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	2e-14
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	8e-14
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	2e-13
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	2e-11
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	5e-11
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	6e-07
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	2e-06
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	1e-05
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	2e-05
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	5e-05
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	1e-04
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	2e-04
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	3e-04
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	3e-04
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	8e-04
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	0.002
PRK01356	166	PRK01356, hscB, co-chaperone HscB; Provisional	0.002
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	0.003

>gnl|CDD|239261 cd02963, TRX_DnaJ, TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

 Score =  130 bits (328), Expect = 4e-36
 Identities = 45/112 (40%), Positives = 72/112 (64%), Gaps = 1/112 (0%)

Query: 124 ISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGF 183
            S  +K S T   +E   +PKS+  P+LI   SDWCF+C+ +EP++K+++ EL PLGVG 
Sbjct: 1   DSFDYKYSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGI 60

Query: 184 FTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLK 235
            TV+  +E+ LAR+LG    +P I  + +G+ +F+ + SF+ Q +V+F R  
Sbjct: 61  ATVNAGHERRLARKLGA-HSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRKL 111

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. Length = 111

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score =  120 bits (302), Expect = 8e-30
 Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 3/103 (2%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           D YE LGV + AS +EI+K Y++L  ++HPD+N D  A+EKF ++ EAY +LSD E+R Q
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQ 60

Query: 80  YDLFGTTD---GFSGQDSASRNFHNHMYNPFDDVFSEGFNFPF 119
           YD FG      G  G       F    +  F D+F + F    
Sbjct: 61  YDQFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGDFFGGGG 103

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  120 bits (302), Expect = 1e-29
 Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 3/97 (3%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRK 78
           D YE LGV + AS +EI+K Y++L  ++HPD+N  D  A+EKF ++ EAY +LSD E+R 
Sbjct: 5   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64

Query: 79  QYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGF 115
            YD FG   GF         F       F D+F + F
Sbjct: 65  AYDQFG-HAGFKAGGFGGFGF-GGFGGDFGDIFEDFF 99

Length = 371

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score =  108 bits (272), Expect = 9e-26
 Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 7/104 (6%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           D YE LGV R A+ +EI+K Y+RL  ++HPD N +P A+EKF ++ EAY +LSD E+RK 
Sbjct: 4   DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKL 63

Query: 80  YDLFGTTDGFSGQDSASRNFHNHMYNPF---DDVFSE---GFNF 117
           YD FG    FSG     +             +D+  +    F F
Sbjct: 64  YDQFG-HAAFSGSGQQQQGQEGFSDFGGGNIEDILEDVFDIFGF 106

Length = 382

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 99.1 bits (248), Expect = 2e-25
 Identities = 36/63 (57%), Positives = 48/63 (76%), Gaps = 1/63 (1%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
          D YE LGVPR AS +EI+K Y++L +++HPDKN  DP A+EKF ++ EAY +LSD E+R 
Sbjct: 1  DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 79 QYD 81
           YD
Sbjct: 61 IYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score =  104 bits (262), Expect = 2e-24
 Identities = 45/100 (45%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 16  AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 75
           A + D YE LG+ + AS+++I+K Y++L +++HPDKN +P A+EKF +++EAY +LSDAE
Sbjct: 2   ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAE 61

Query: 76  RRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGF 115
           +R QYD FG   G   Q SA   F    +  F D+F   F
Sbjct: 62  KRAQYDRFGHA-GIDNQYSAEDIFRGADFGGFGDIFEMFF 100

Length = 377

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score =  102 bits (257), Expect = 9e-24
 Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 10/103 (9%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           D YE LGV R A  +EI+K Y++L  ++HPD + +  A+EKF +++EAY +LSD E+R++
Sbjct: 6   DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQR 65

Query: 80  YDLFGTT--DGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFE 120
           YD FG    DGFS +D       N++   F+D+F  GF F   
Sbjct: 66  YDQFGHAGMDGFSQED-----IFNNI--NFEDIFQ-GFGFGIG 100

Length = 378

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  101 bits (254), Expect = 3e-23
 Identities = 41/105 (39%), Positives = 58/105 (55%), Gaps = 17/105 (16%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
           D YE LGV R AS  EI+K Y++L +++HPD+N  D  A+EKF ++ EAY +LSD ++R 
Sbjct: 5   DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64

Query: 79  QYDLFG--------TTDGFSGQDSASRNFHNHMYNPFDDVFSEGF 115
            YD +G           GF G       F     + F D+F + F
Sbjct: 65  AYDQYGHAAFEQGGGGGGFGGGG----GFG----DIFGDIFGDIF 101

Length = 371

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 99.6 bits (248), Expect = 1e-22
 Identities = 45/99 (45%), Positives = 61/99 (61%), Gaps = 7/99 (7%)

Query: 19  LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRK 78
           +D YE LGV RTAS  EI+  Y++L +++HPD+N +  A EKF Q+ EAY +LSDAE+R 
Sbjct: 2   MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRA 61

Query: 79  QYDLFGTTD--GFSGQDSASRNFHNHMYNPFDDVFSEGF 115
            YD FGT    G  G D     F    ++P  D+F + F
Sbjct: 62  HYDRFGTAPGAGMPGGDP----FGGMGFDPM-DIFEQLF 95

Length = 371

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 97.5 bits (243), Expect = 7e-22
 Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 16/106 (15%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           + Y+ LGV + AS  EI+K Y++L  ++HPD N +P A+EK+ ++ EAY  LSD ++R  
Sbjct: 5   EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAA 64

Query: 80  YDLFGTTD----------GFSGQDSASRNFHNHMYNPFDDVFSEGF 115
           YD +G             GF G D +        +  F+D+FS  F
Sbjct: 65  YDQYGAAGANGGFGGGAGGFGGFDGSGG------FGGFEDIFSSFF 104

Length = 380

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 96.7 bits (241), Expect = 1e-21
 Identities = 42/99 (42%), Positives = 59/99 (59%), Gaps = 5/99 (5%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           D YE LGV ++AS  EI+K Y++L  ++HPD N +  A EKF +++EAY +LSD ++R Q
Sbjct: 5   DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQ 64

Query: 80  YDLFGTTD---GFSGQDSASRNFHNHMYNPFDDVFSEGF 115
           YD FG      GF G      +F       F+D+FS  F
Sbjct: 65  YDQFGHAGPNQGFGGGGFGGGDFGGGF--GFEDIFSSFF 101

Length = 376

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 96.0 bits (239), Expect = 2e-21
 Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 5/105 (4%)

Query: 16  AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDA 74
               D YE LGV R AS  EI+K Y++L +++HPD+N ++P A++KF +  EAY +L DA
Sbjct: 1   MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDA 60

Query: 75  ERRKQYDLFGTTDGFSGQDSASRNFHNH--MYNPFDDVFSEGFNF 117
           E+R +YD FG   G +G       F +   +++ F D+F + F F
Sbjct: 61  EKRARYDRFG-HAGVNGNGGFG-GFSSAEDIFSHFSDIFGDLFGF 103

Length = 373

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 94.6 bits (235), Expect = 2e-21
 Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 6/105 (5%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           D Y  LGVP+ AS  EI+K +K+L  ++HPD N  P A+EKF ++ EAY +LSD E+R+ 
Sbjct: 5   DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRI 64

Query: 80  YDLFGTTDGFSGQDS------ASRNFHNHMYNPFDDVFSEGFNFP 118
           YD +GTT   +G            +F       F D F + F   
Sbjct: 65  YDTYGTTAASAGWQGPPPGPPGGGDFSGFNVGDFSDFFQQLFGGR 109

Length = 291

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 94.4 bits (235), Expect = 5e-21
 Identities = 42/100 (42%), Positives = 64/100 (64%), Gaps = 4/100 (4%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
           D YE LGV R AS +EI+K+Y++L +++HPD+N  D  A+E F +  EAY +LSD ++R 
Sbjct: 5   DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRG 64

Query: 79  QYDLFGTTDGFSGQD-SASRNFHNHMYNPFDDVFSEGFNF 117
            YD +G  +G SG   S    F + +++ F D+F + F F
Sbjct: 65  IYDQYG-HEGLSGTGFSGFSGFDD-IFSSFGDIFEDFFGF 102

Length = 366

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 94.5 bits (235), Expect = 5e-21
 Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 11/102 (10%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 77
           D YE LGV R A+ +EI++ YKRLV EWHPD++  N   A++KF ++ EAY +LSD ++R
Sbjct: 5   DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKR 64

Query: 78  KQYDLFG-TTDG-FSGQDSASRNFHNHMYNPFDDVFSEGFNF 117
             YD FG   +     +  +   F       F+D+F +  N 
Sbjct: 65  AMYDRFGYVGEQPPYQETESGGGF-------FEDIFKDFENI 99

Length = 369

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 83.4 bits (207), Expect = 5e-20
 Identities = 32/59 (54%), Positives = 44/59 (74%), Gaps = 2/59 (3%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAER 76
          D YE LGVPR ASL EI+K Y++L +++HPDKN  +   A+EKF ++ EAY +LSD E+
Sbjct: 2  DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60

Length = 60

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 91.8 bits (228), Expect = 5e-20
 Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 16/117 (13%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
           D YE LGV R+A   EI+K Y++L +++HPDKN ++  A+E F ++ EAY +LS+ ++R+
Sbjct: 4   DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR 63

Query: 79  QYDLFG--------TTDGFSGQDSASRNFHNHMYNPFDDVFSEGFN------FPFEE 121
           +YD FG         + G  G      +F N +++ F+D+F  G        F FE+
Sbjct: 64  RYDQFGHAGVGSSAASGGGPGYGGGGGDF-NDIFSAFNDMFGGGARRGGGSPFGFED 119

Length = 397

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 83.0 bits (206), Expect = 6e-20
 Identities = 30/55 (54%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-PTAQEKFLQLTEAYNILSD 73
          D Y+ LGVP  AS +EI+K Y++L +++HPDKN D P A+EKF ++ EAY +LSD
Sbjct: 1  DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 90.6 bits (225), Expect = 1e-19
 Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 11/110 (10%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
           D YE LGV R A+ +EI+K Y+RL  ++HPD N  D  A++KF ++ EAY ILSD ++R 
Sbjct: 6   DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 65

Query: 79  QYDLFG---------TTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPF 119
           QYD FG            GF           +  +  F D+F + F   F
Sbjct: 66  QYDQFGHAAFDPGGFGQGGFGQGG-FGGGGFDFDFGGFGDIFEDIFGDFF 114

Length = 386

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 89.5 bits (222), Expect = 3e-19
 Identities = 34/70 (48%), Positives = 51/70 (72%), Gaps = 5/70 (7%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
          D Y+ LGVP+ A+  EI+K Y++L  E+HPD N  D  A+E+F +++EAY++LSD ++RK
Sbjct: 10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69

Query: 79 QYD----LFG 84
          +YD    LFG
Sbjct: 70 EYDEARSLFG 79

Length = 389

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 89.1 bits (221), Expect = 3e-19
 Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 4/100 (4%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
           D YE LG+ + AS  EI+K +++L +++HPDKN  +  A+EKF ++ EAY +LSD +++ 
Sbjct: 5   DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64

Query: 79  QYDLFGTTD--GFSGQDSAS-RNFHNHMYNPFDDVFSEGF 115
           QYD FGT D  G  G  S     F       F D+F   F
Sbjct: 65  QYDQFGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFF 104

Length = 380

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 88.9 bits (220), Expect = 5e-19
 Identities = 44/105 (41%), Positives = 63/105 (60%), Gaps = 9/105 (8%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           D YE LGV +TAS QEIR+ Y++L  ++HPD N  P A +K +++ EA ++L D ++RKQ
Sbjct: 5   DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQ 64

Query: 80  YDLFGTT--DGFSGQDSASRNFHNHMYN-------PFDDVFSEGF 115
           YD FG    DG SG  S   +F +   N        F ++FS+ F
Sbjct: 65  YDQFGHAAFDGSSGFSSNFGDFEDLFSNMGSSGFSSFTNIFSDFF 109

Length = 372

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 87.2 bits (216), Expect = 2e-18
 Identities = 35/75 (46%), Positives = 55/75 (73%), Gaps = 1/75 (1%)

Query: 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERR 77
          +D Y  LGV +TAS +EI+K Y++L V++HPDKN  D  A+++F +++EAY +LSDA++R
Sbjct: 1  MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKR 60

Query: 78 KQYDLFGTTDGFSGQ 92
          + YD +G    F+G 
Sbjct: 61 ESYDRYGKDGPFAGA 75

Length = 391

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 86.9 bits (215), Expect = 2e-18
 Identities = 42/103 (40%), Positives = 66/103 (64%), Gaps = 7/103 (6%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 77
           D Y+ LGV R AS ++I+K ++ L  +WHPD +  N   A+EKF +++EAY +LSD ++R
Sbjct: 4   DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63

Query: 78  KQYDLFGTTD-GFSGQDSASRNFHNHMYNPFDDVFSEGF--NF 117
           +QYD  GT D G  G +    NF +  ++  +D+F++ F  NF
Sbjct: 64  RQYDQTGTVDFGAGGSNFNWDNFTH--FSDINDIFNQIFGGNF 104

Length = 365

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 84.7 bits (209), Expect = 1e-17
 Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 10/99 (10%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           D YE LGV R AS+ E++K Y++L  ++HPD N  P A++KF ++ EAY+ LSD +++  
Sbjct: 5   DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAH 64

Query: 80  YDLFGTTD---GFSGQDSASRNFHNHMYNPFDDVFSEGF 115
           YD FG TD   GF G  +         +  F D+F   F
Sbjct: 65  YDQFGHTDPNQGFGGGGAGD-------FGGFSDIFDMFF 96

Length = 371

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 83.9 bits (207), Expect = 2e-17
 Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 4/98 (4%)

Query: 22  YETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQY 80
           Y+ LGV ++A+ +EI+  Y++L +++HPDKN  +  ++EKF + TEAY IL D ++R+ Y
Sbjct: 7   YDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAY 66

Query: 81  DLF---GTTDGFSGQDSASRNFHNHMYNPFDDVFSEGF 115
           D F   G   G  G    +    + ++  F D+F + F
Sbjct: 67  DQFGKAGVNAGAGGFGQGAYTDFSDIFGDFGDIFGDFF 104

Length = 372

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 83.7 bits (207), Expect = 3e-17
 Identities = 39/94 (41%), Positives = 59/94 (62%), Gaps = 4/94 (4%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
           D YE LGV +TA++ EI+K Y++  +++HPDKN  D  A+EKF +  EAY++LSD ++R 
Sbjct: 6   DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65

Query: 79  QYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFS 112
           +YD FG   G  G  +    F     +  +D+FS
Sbjct: 66  RYDQFGHA-GVGGA-AGGGGFSGEGMS-MEDIFS 96

Length = 386

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 83.2 bits (206), Expect = 3e-17
 Identities = 33/65 (50%), Positives = 43/65 (66%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
          D Y  LGV R AS  EI++ Y++L  E HPD N D  AQEKF +++ AY +LSD E+R+ 
Sbjct: 4  DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRI 63

Query: 80 YDLFG 84
           DL G
Sbjct: 64 VDLGG 68

Length = 378

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 82.3 bits (204), Expect = 5e-17
 Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
          D YE LGV R A   E+++ Y+RL  ++HPD N +P A+++F ++  AY +LSD E R +
Sbjct: 4  DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRAR 63

Query: 80 YDLFGTTDGFSG 91
          YD FG   G SG
Sbjct: 64 YDQFGEA-GVSG 74

Length = 374

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 79.9 bits (196), Expect = 7e-17
 Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 3/117 (2%)

Query: 18  SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP--TAQEKFLQLTEAYNILSDAE 75
            LD YE LGVP  ASL+EI+K Y++L +++HPD+N      A+EKF ++ EAY ILSD E
Sbjct: 5   LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPE 64

Query: 76  RRKQYDLFGTTDGFSGQDS-ASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLS 131
           RR +YD  G  + F G+    S  F          ++ E      +    +    L 
Sbjct: 65  RRAEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGLYEEWRGKRNKTERKASLADLL 121

Length = 237

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 78.9 bits (194), Expect = 8e-16
 Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 7/102 (6%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
           D YE LG+ + AS  EI+K Y+++ +++HPDKN  +  A+  F + TEAY +L D  +R 
Sbjct: 4   DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63

Query: 79  QYDLFGTT-----DGFSGQDSASRNFHNHMYNPFDDVFSEGF 115
           QYD FG T      GF G       F + ++  F D+F   F
Sbjct: 64  QYDRFGHTAFEGGGGFEGFSGGFSGFSD-IFEDFGDIFDSFF 104

Length = 365

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 1/63 (1%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
          D Y+ LGV   AS +EI+K Y++L  E HPD N  DP A+E+F  ++EA+++LSD  +RK
Sbjct: 10 DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69

Query: 79 QYD 81
          +YD
Sbjct: 70 EYD 72

Length = 392

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 75.8 bits (186), Expect = 1e-14
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 6/102 (5%)

Query: 17  VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAER 76
           +S D Y+ LGV +TAS  +++K Y +L  ++HPD  +   A++KF ++  AY++L D ++
Sbjct: 1   MSQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQK 60

Query: 77  RKQYDLFGTTDGFSGQDS-----ASRNFHNHMYNPFDDVFSE 113
           R  YD FG  D F  Q S         FH  + + F D FS+
Sbjct: 61  RAAYDRFG-HDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSD 101

Length = 372

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 75.2 bits (185), Expect = 2e-14
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 81
          YE L + +  +  EI+K Y++L ++ HPDK  DP   EKF +++ AY +LSD E+RK YD
Sbjct: 31 YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDP---EKFKEISRAYEVLSDPEKRKIYD 87

Query: 82 LFGTTDGFSG 91
           +G  +G  G
Sbjct: 88 EYG-EEGLEG 96

Length = 421

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 72.2 bits (177), Expect = 8e-14
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           D Y  +GV  T  L+ I+  Y+RL  ++HPD + +P A+ +F ++ EA+ +LSD +RR +
Sbjct: 5   DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64

Query: 80  YD---LFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGF 115
           YD          F  +     +  +     FDD+FS  F
Sbjct: 65  YDQLWQHRNDPQF-NRQFQHGDGQSFNAEDFDDIFSSIF 102

Length = 306

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 72.5 bits (177), Expect = 2e-13
 Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 3/88 (3%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           D YE LG+ R A  QEI+K +++L  ++HPD+N  P A   F ++ EA ++LS+ ++R  
Sbjct: 3   DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRAN 62

Query: 80  YDLFGTTDGFSGQDSASRNFHNHMYNPF 107
           YD +G  DG   +D    +F   ++N F
Sbjct: 63  YDKYG-HDGVDREDDF--DFQADVFNSF 87

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 65.1 bits (158), Expect = 2e-11
 Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 3/102 (2%)

Query: 17  VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAE 75
           + L  YE L V + ++ + I+K+Y++L +++HPD+N  D  A+EKF  + EAY +LSD +
Sbjct: 1   MELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEK 60

Query: 76  RRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNF 117
           +R  YD +G   G + Q  AS++  +  +      F + F F
Sbjct: 61  KRALYDRYG-KKGLN-QAGASQSDFSDFFEDLGSFFEDAFGF 100

Length = 369

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 65.0 bits (158), Expect = 5e-11
 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 6/75 (8%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDK--NNDPTA----QEKFLQLTEAYNILSD 73
           DPYE LG+ +  S ++I+K Y+ L +++HPDK            +EK+  +T+AY +L+D
Sbjct: 99  DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD 158

Query: 74  AERRKQYDLFGTTDG 88
            +RR+ Y  +GT D 
Sbjct: 159 KKRRENYLNYGTPDS 173

Length = 610

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE 191
            T  NFE+  I  S   P L+ F++ WC  C Q+ P  +KL  E          V+   E
Sbjct: 28  VTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAE 86

Query: 192 QGLARRLGVGSQLPQIALLTDGR 214
             +A + GV S +P +    DG+
Sbjct: 87  PMVAAQFGVQS-IPTVYAFKDGQ 108

Length = 304

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 50.9 bits (121), Expect = 2e-06
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 22  YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 81
           Y+ LGV   A ++EI + Y +L   ++P K +      KF ++ EAY IL D +++K Y+
Sbjct: 576 YDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYN 635

Query: 82  LFGTTDGFSG 91
            FG  DG  G
Sbjct: 636 KFG-YDGIKG 644

Length = 1136

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-LGVGFFTVHVHNEQGL 194
           NF++  +  S     L+ FY+ WC  C  + P ++KL  EL     V    V       L
Sbjct: 7   NFDE-LVKDS--KDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDL 63

Query: 195 ARRLGVGSQLPQIALLTDGRTSFFK-EPSFSVQKMVEF 231
               GV    P I L  +G     K E   +++ +VEF
Sbjct: 64  CSEYGV-RGYPTIKLFPNGSKEPVKYEGPRTLESLVEF 100

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208
           P ++ F++ WC  C  + P+ ++L +E     V F  V V     LA   GV   +P   
Sbjct: 12  PVVVDFWAPWCGPCKAIAPVLEELAEEYP--KVKFVKVDVDENPELAEEYGV-RSIPTFL 68

Query: 209 LLTDGR 214
              +G+
Sbjct: 69  FFKNGK 74

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
           NF+   + +S   P ++ F++       ++ P+ ++L +E          V+   +  +A
Sbjct: 2   NFQ-QVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEE-YQGQFVLAKVNCDAQPQIA 59

Query: 196 RRLGVGSQLPQIALLTDGR 214
           ++ GV + LP + L   G+
Sbjct: 60  QQFGVQA-LPTVYLFAAGQ 77

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 210
           +I FY+ WC AC Q++P +++  D    LG+    V V  E GL+ R  V + LP I   
Sbjct: 20  MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTA-LPTIYHA 78

Query: 211 TDG 213
            DG
Sbjct: 79  KDG 81

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208
           P L+ F++ WC  C  + PI ++L  E     V F  ++V     +A + G+ S +P + 
Sbjct: 16  PVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRS-IPTLL 73

Query: 209 LLTDG 213
           L  +G
Sbjct: 74  LFKNG 78

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 19  LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFL-----QLTEAYNILSD 73
            D  + LGV   A    I+K Y++L+ E HPDK      + +F+     +L E      D
Sbjct: 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYED 172

Query: 74  AE 75
            +
Sbjct: 173 IK 174

Length = 174

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDK 51
           D Y+ LGV  +   QEI++ Y++L+ E HPDK
Sbjct: 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDK 232

Length = 267

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
           NF++  + KS   P L+ FY+ WC  C  + P ++KL  E     V F  V       LA
Sbjct: 9   NFDE-EVAKS-DKPVLVDFYAPWCGPCKALAPEYEKLAQEYKD-DVKFAKVDADENPDLA 65

Query: 196 RRLGVGSQLPQIALLTDG 213
              GV    P I    +G
Sbjct: 66  SEYGVRG-FPTIKFFKNG 82

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 10/148 (6%)

Query: 128 HKLSTTHWNFEK--NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFT 185
             +     NFEK       + T P  + FY+ WC  C ++ P +++L   L    V    
Sbjct: 31  ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVAD 89

Query: 186 VHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEF----FRLKLPYKLI 241
           +       LA+R  +    P + L   G+   ++    S +K+  F    F+  L   + 
Sbjct: 90  LDATRALNLAKRFAIKG-YPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKALGAPVP 148

Query: 242 VPLS--ATNVDAFLDNWREDNKVHALLF 267
            PLS  A  +D F+    E  +++   F
Sbjct: 149 APLSFFALTIDFFVSGTNEALRIYDAAF 176

Length = 224

>gnl|CDD|167217 PRK01356, hscB, co-chaperone HscB; Provisional

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 22 YETLGVPRTAS--LQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQ----LTEAYNILSDAE 75
          ++ LG+P+  +  L+ + K Y  + V++HPDK      +E+ L     L  AY+ L DA 
Sbjct: 5  FQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDAL 64

Query: 76 RRKQYDL 82
          +R +Y L
Sbjct: 65 KRAEYML 71

Length = 166

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 16  AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTA---QEKFLQLTEAYNILS 72
            + L  Y T  +P      +I K +K+ V ++HPDK          E F  + +A  +L 
Sbjct: 48  LLGLSKYRTKAIP-----PQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLG 102

Query: 73  DAERRKQYD 81
           D + R QYD
Sbjct: 103 DRKLRLQYD 111

Length = 379

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	554
KOG0190|consensus	493		100.0
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	100.0
KOG4277|consensus	468		99.98
PTZ00102	477	disulphide isomerase; Provisional	99.97
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.94
KOG0912|consensus	375		99.92
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.91
KOG0713|consensus	336		99.91
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.83
KOG0712|consensus	337		99.83
PRK14296	372	chaperone protein DnaJ; Provisional	99.81
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.8
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.8
PRK14288	369	chaperone protein DnaJ; Provisional	99.79
KOG0191|consensus	383		99.79
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.79
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.78
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.78
PRK14298	377	chaperone protein DnaJ; Provisional	99.78
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.77
PRK14287	371	chaperone protein DnaJ; Provisional	99.77
KOG0910|consensus	150		99.77
PRK14276	380	chaperone protein DnaJ; Provisional	99.77
PRK14286	372	chaperone protein DnaJ; Provisional	99.77
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.76
PRK14301	373	chaperone protein DnaJ; Provisional	99.76
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.75
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.75
PRK14282	369	chaperone protein DnaJ; Provisional	99.75
PRK14291	382	chaperone protein DnaJ; Provisional	99.75
PRK14278	378	chaperone protein DnaJ; Provisional	99.75
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.75
PRK14294	366	chaperone protein DnaJ; Provisional	99.75
PRK14280	376	chaperone protein DnaJ; Provisional	99.75
PRK14277	386	chaperone protein DnaJ; Provisional	99.74
PRK14285	365	chaperone protein DnaJ; Provisional	99.74
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.74
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.74
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.73
PRK14297	380	chaperone protein DnaJ; Provisional	99.73
PRK14299	291	chaperone protein DnaJ; Provisional	99.73
PRK10767	371	chaperone protein DnaJ; Provisional	99.72
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.72
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.71
PRK14279	392	chaperone protein DnaJ; Provisional	99.71
PRK14283	378	chaperone protein DnaJ; Provisional	99.7
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.7
PRK09381	109	trxA thioredoxin; Provisional	99.7
PRK14300	372	chaperone protein DnaJ; Provisional	99.7
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.69
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.69
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.68
PHA02278	103	thioredoxin-like protein	99.67
KOG0624|consensus	504		99.67
KOG0716|consensus	279		99.67
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.66
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.66
KOG0721|consensus	230		99.66
PRK14295	389	chaperone protein DnaJ; Provisional	99.66
PRK14284	391	chaperone protein DnaJ; Provisional	99.65
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.65
KOG0715|consensus	288		99.65
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.65
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.65
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.64
PRK14281	397	chaperone protein DnaJ; Provisional	99.64
PLN02309	457	5'-adenylylsulfate reductase	99.64
KOG0691|consensus	296		99.64
PRK10996	139	thioredoxin 2; Provisional	99.64
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.64
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.64
KOG0717|consensus	508		99.63
PRK14292	371	chaperone protein DnaJ; Provisional	99.63
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.62
PRK14293	374	chaperone protein DnaJ; Provisional	99.62
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.62
PRK14290	365	chaperone protein DnaJ; Provisional	99.62
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.61
KOG0718|consensus	546		99.61
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.61
PRK14289	386	chaperone protein DnaJ; Provisional	99.61
KOG0719|consensus	264		99.6
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.6
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.59
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.59
KOG1731|consensus	606		99.59
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.59
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.58
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.58
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.57
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.57
KOG0190|consensus	493		99.55
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.54
KOG0191|consensus	383		99.53
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.53
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.52
KOG0907|consensus	106		99.52
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.52
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.51
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.51
PHA03102	153	Small T antigen; Reviewed	99.5
PTZ00051	98	thioredoxin; Provisional	99.48
KOG0722|consensus	329		99.48
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.47
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.47
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.45
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.45
PTZ00102	477	disulphide isomerase; Provisional	99.42
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.41
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	99.41
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.38
KOG0908|consensus	288		99.37
PRK05014	171	hscB co-chaperone HscB; Provisional	99.36
PRK01356	166	hscB co-chaperone HscB; Provisional	99.35
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.35
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.35
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.34
KOG0720|consensus	490		99.33
PTZ00062	204	glutaredoxin; Provisional	99.32
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.32
PRK00294	173	hscB co-chaperone HscB; Provisional	99.31
KOG0550|consensus	486		99.29
PRK03578	176	hscB co-chaperone HscB; Provisional	99.29
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.28
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.24
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.23
PTZ00100	116	DnaJ chaperone protein; Provisional	99.23
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.18
KOG0714|consensus	306		99.14
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.13
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.12
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.1
PHA02125	75	thioredoxin-like protein	99.06
PHA02624	647	large T antigen; Provisional	99.05
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.02
KOG1150|consensus	250		99.01
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.97
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.96
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.96
PRK01773	173	hscB co-chaperone HscB; Provisional	98.95
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.9
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.9
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.87
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.87
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.85
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.83
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.82
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.81
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.81
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.8
KOG0914|consensus	265		98.79
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	98.78
KOG0913|consensus	248		98.77
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.75
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.75
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.73
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	98.72
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.7
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	98.7
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.7
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.61
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.58
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.55
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.51
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.5
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.48
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.45
PTZ00056	199	glutathione peroxidase; Provisional	98.43
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.36
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.3
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.3
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.23
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.23
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.23
KOG0568|consensus	342		98.22
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.2
PLN02412	167	probable glutathione peroxidase	98.18
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.14
smart00594	122	UAS UAS domain.	98.13
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.12
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.12
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.1
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.09
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	98.07
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	98.07
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	98.05
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.02
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.01
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.97
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	97.96
KOG0911|consensus	227		97.94
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.93
KOG1789|consensus	2235		97.91
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.9
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	97.89
KOG1672|consensus	211		97.88
PTZ00256	183	glutathione peroxidase; Provisional	97.85
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	97.85
PF13728	215	TraF: F plasmid transfer operon protein	97.84
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	97.83
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	97.83
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	97.82
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	97.79
KOG2501|consensus	157		97.77
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	97.74
KOG0723|consensus	112		97.74
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	97.73
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	97.71
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	97.7
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	97.67
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	97.66
PRK10606	183	btuE putative glutathione peroxidase; Provisional	97.64
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	97.6
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	97.6
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	97.59
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	97.58
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	97.56
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	97.55
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	97.54
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.51
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	97.5
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.49
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	97.48
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	97.47
COG2143	182	Thioredoxin-related protein [Posttranslational mod	97.45
PRK11200	85	grxA glutaredoxin 1; Provisional	97.45
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.44
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	97.37
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	97.32
PRK13190	202	putative peroxiredoxin; Provisional	97.28
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	97.28
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	97.23
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	97.21
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.18
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.17
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	97.17
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	97.16
PRK15000	200	peroxidase; Provisional	97.14
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	97.12
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	97.12
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	97.11
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	97.11
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	97.1
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.1
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	97.1
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.09
KOG4277|consensus	468		97.07
KOG2603|consensus	331		97.07
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.04
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	97.0
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	97.0
PRK10996	139	thioredoxin 2; Provisional	97.0
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	96.98
KOG0912|consensus	375		96.97
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	96.97
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	96.97
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	96.92
PTZ00137	261	2-Cys peroxiredoxin; Provisional	96.91
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.91
PRK09381	109	trxA thioredoxin; Provisional	96.91
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	96.91
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	96.9
KOG3425|consensus	128		96.88
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	96.85
KOG0910|consensus	150		96.83
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	96.82
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	96.81
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.76
PRK13599	215	putative peroxiredoxin; Provisional	96.75
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	96.75
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	96.62
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.62
PRK13189	222	peroxiredoxin; Provisional	96.57
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	96.54
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	96.53
KOG3192|consensus	168		96.53
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	96.5
PTZ00253	199	tryparedoxin peroxidase; Provisional	96.48
PRK13191	215	putative peroxiredoxin; Provisional	96.4
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	96.38
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	96.38
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.38
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	96.37
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	96.35
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	96.33
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	96.32
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	96.24
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	96.14
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	96.09
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	96.08
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	96.05
KOG3414|consensus	142		96.05
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	96.04
PLN02309	457	5'-adenylylsulfate reductase	95.97
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	95.95
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	95.88
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	95.76
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	95.76
cd02947	93	TRX_family TRX family; composed of two groups: Gro	95.76
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	95.75
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	95.73
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.65
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	95.55
cd03071	116	PDI_b'_NRX PDIb' family, NRX subgroup, redox inact	95.55
PHA02278	103	thioredoxin-like protein	95.54
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	95.53
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	95.51
PRK10329	81	glutaredoxin-like protein; Provisional	95.44
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	95.43
PTZ00051	98	thioredoxin; Provisional	95.42
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	95.4
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	95.37
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	95.35
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	95.34
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	95.32
KOG0431|consensus	453		95.18
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	95.15
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	94.92
PHA03050	108	glutaredoxin; Provisional	94.82
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	94.79
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	94.74
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	94.72
KOG0907|consensus	106		94.68
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	94.63
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	94.61
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	94.4
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	94.39
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	94.07
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	93.75
PTZ00062	204	glutaredoxin; Provisional	93.71
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	93.55
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	93.47
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	93.34
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	93.2
PRK10638	83	glutaredoxin 3; Provisional	93.05
PRK10824	115	glutaredoxin-4; Provisional	92.72
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	92.7
KOG1731|consensus	606		92.64
KOG3170|consensus	240		91.93
KOG2640|consensus	319		91.7
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	91.57
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	91.18
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	91.14
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	90.34
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	89.86
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	89.64
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	88.91
KOG3171|consensus	273		88.49
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	88.12
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	87.79
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	87.65
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	86.97
KOG1752|consensus	104		86.16
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	86.02
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	85.72
COG3019	149	Predicted metal-binding protein [General function	85.39
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	85.09
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	84.83
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	83.86
KOG2603|consensus	331		82.85
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	82.64
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	80.57
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	80.18

>KOG0190|consensus

Probab=100.00  E-value=9.6e-42  Score=352.80  Aligned_cols=349  Identities=16%  Similarity=0.236  Sum_probs=282.4

Q ss_pred             ccccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCcHHHHHHhCCcC
Q psy16770        125 SLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNEQGLARRLGVGS  202 (554)
Q Consensus       125 ~~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~~~l~~~~~v~~  202 (554)
                      ....+++||.+||+..|   ..+..++|+||||||+||++++|+|+++|+.|+..  .+.+++|||+.+..+|++|+|+|
T Consensus        23 ~~~~Vl~Lt~dnf~~~i---~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~g   99 (493)
T KOG0190|consen   23 AEEDVLVLTKDNFKETI---NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRG   99 (493)
T ss_pred             cccceEEEecccHHHHh---ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCC
Confidence            34579999999999999   57889999999999999999999999999999854  69999999999999999999998


Q ss_pred             CCCcceeccCCeE-EEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHh
Q psy16770        203 QLPQIALLTDGRT-SFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINA  281 (554)
Q Consensus       203 ~~Pti~~~~~g~~-~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a  281 (554)
                       |||+++|+||.. ..|.|+ |++++|+.||+++.+|+...+-+.++++.|+..   ....++++|.+.....-.++..+
T Consensus       100 -yPTlkiFrnG~~~~~Y~G~-r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~---~~~~vig~F~d~~~~~~~~~~~a  174 (493)
T KOG0190|consen  100 -YPTLKIFRNGRSAQDYNGP-READGIVKWLKKQSGPASKTLKTVDEAEEFLSK---KDVVVIGFFKDLESLAESFFDAA  174 (493)
T ss_pred             -CCeEEEEecCCcceeccCc-ccHHHHHHHHHhccCCCceecccHHHHHhhccC---CceEEEEEecccccchHHHHHHH
Confidence             999999999995 777766 589999999999999996656577889999963   45566667766665555566666


Q ss_pred             hccCCceEEEEEEccCCCChhHHhHhCCCCC-CceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccccccchhh
Q psy16770        282 FKHRTTIVFGVIVYDQEDSSSVFQRFKVPGD-KDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSM  360 (554)
Q Consensus       282 ~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~-~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~~  360 (554)
                      ..+++++.|+++     ++.+++++++++.+ .+.++++++..+....  +.+++..+.|.+||..+++|++.++|.++.
T Consensus       175 ~~l~~d~~F~~t-----s~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~--~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~  247 (493)
T KOG0190|consen  175 SKLRDDYKFAHT-----SDSDVAKKLELNTEGTFPIVLFKKFDELLVK--YDGSFTPELLKKFIQENSLPLVTEFTVANN  247 (493)
T ss_pred             Hhccccceeecc-----CcHhHHhhccCCCCCcceEEeccccccchhh--cccccCHHHHHHHHHHhcccccceeccccc
Confidence            688999999977     78999999998721 3448888876665433  478899999999999999999999997543


Q ss_pred             ---hhhcCCCCceEEEEEcC-CCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEE
Q psy16770        361 ---LDAVCPVKKLCVVLFSE-DSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAM  436 (554)
Q Consensus       361 ---~~~~c~~~~lcvvl~~~-~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v  436 (554)
                         +....   .+-++++.. ...+.+.+++.++++|++  |++ .++|+++|.+..+..++.|    |..+.... +.+
T Consensus       248 ~~~~~~~~---~~~~~~~~~~~~~~~e~~~~~~~~vAk~--f~~-~l~Fi~~d~e~~~~~~~~~----Gl~~~~~~-~~~  316 (493)
T KOG0190|consen  248 AKIYSSFV---KLGLDFFVFFKCNRFEELRKKFEEVAKK--FKG-KLRFILIDPESFARVLEFF----GLEEEQLP-IRA  316 (493)
T ss_pred             ceeecccc---ccceeEEeccccccHHHHHHHHHHHHHh--ccc-ceEEEEEChHHhhHHHHhc----CcccccCC-eeE
Confidence               33322   344555542 223778999999999999  986 6999999998877777777    21111122 445


Q ss_pred             EEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCCCccccccccchhh-hhhhHHHHHHHHHHH
Q psy16770        437 WRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISD-EYIQSLGVRIFNRIF  508 (554)
Q Consensus       437 ~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~~~~~~~~lp~~~d-e~~~~~~~r~~~~~~  508 (554)
                      +..+.++.||.+-.+         +.+.++|.+|+.+++.|+.+|..+++++|+-+| .++..+|+++|+.++
T Consensus       317 v~~~~~~~Ky~~~~e---------~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv  380 (493)
T KOG0190|consen  317 VILNEDGSKYPLEEE---------ELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIV  380 (493)
T ss_pred             EeeccccccccCccc---------cccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHh
Confidence            556677788854333         467789999999999999999999999999999 889999999999844

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=100.00  E-value=2.6e-31  Score=286.27  Aligned_cols=347  Identities=18%  Similarity=0.275  Sum_probs=256.2

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCC--EEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHNEQGLARRLGVGSQLP  205 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~--v~~~~Vd~~~~~~l~~~~~v~~~~P  205 (554)
                      ++++||.++|++.+   ..+++++|.||||||++|+++.|.|.++++.+++.+  +.+++|||+.+..+|++++|.+ +|
T Consensus         2 ~v~~l~~~~~~~~i---~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~-~P   77 (462)
T TIGR01130         2 DVLVLTKDNFDDFI---KSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSG-YP   77 (462)
T ss_pred             CceECCHHHHHHHH---hcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcc-cc
Confidence            57889999999988   356799999999999999999999999999987544  9999999999999999999997 99


Q ss_pred             cceeccCCeE--EEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEE-ecCCchhHHHHHHhh
Q psy16770        206 QIALLTDGRT--SFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLF-QRSLPVRLRYLINAF  282 (554)
Q Consensus       206 ti~~~~~g~~--~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f-~~~~~~~~~~~~~a~  282 (554)
                      |+++|++|+.  ..|.|. ++.+.|.+|+.+.+++......+.++++.|+..    +.+.+++| .+..+.....+...+
T Consensus        78 t~~~~~~g~~~~~~~~g~-~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~----~~~~vi~~~~~~~~~~~~~~~~~a  152 (462)
T TIGR01130        78 TLKIFRNGEDSVSDYNGP-RDADGIVKYMKKQSGPAVKEIETVADLEAFLAD----DDVVVIGFFKDLDSELNDTFLSVA  152 (462)
T ss_pred             EEEEEeCCccceeEecCC-CCHHHHHHHHHHhcCCCceeecCHHHHHHHHhc----CCcEEEEEECCCCcHHHHHHHHHH
Confidence            9999999986  566654 688999999999999885444456889999853    44545544 443333333333333


Q ss_pred             -ccCCceE-EEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCC--ChhHHHhHHhcCCCcccccccch
Q psy16770        283 -KHRTTIV-FGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSI--PVPTLQDITDNNPYLTLPRISSQ  358 (554)
Q Consensus       283 -~~~~~v~-Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~--~~~~l~~fi~~~~~~~v~~lt~~  358 (554)
                       .+.+.+. |+.+     .+..+.+++++.  .+++++|+...+......+.++.  +.+.|.+||..+++|.+++++..
T Consensus       153 ~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~  225 (462)
T TIGR01130       153 EKLRDVYFFFAHS-----SDVAAFAKLGAF--PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQE  225 (462)
T ss_pred             HHhhhccceEEec-----CCHHHHhhcCCC--CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCc
Confidence             5555555 3333     466788888875  47788887644433223455554  44789999999999999999976


Q ss_pred             hhhhhcCCCCceEEEEEcCCCC--cchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEE
Q psy16770        359 SMLDAVCPVKKLCVVLFSEDSP--EHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAM  436 (554)
Q Consensus       359 ~~~~~~c~~~~lcvvl~~~~~~--~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v  436 (554)
                      +..... ..+.++++++..+..  ..+...+.++++|++  +++..+.|+++|+.+...++..+...    .  ..+|.+
T Consensus       226 ~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~i~f~~~d~~~~~~~~~~~~~~----~--~~~P~~  296 (462)
T TIGR01130       226 TAAKYF-ESGPLVVLYYNVDESLDPFEELRNRFLEAAKK--FRGKFVNFAVADEEDFGRELEYFGLK----A--EKFPAV  296 (462)
T ss_pred             chhhHh-CCCCceeEEEEecCCchHHHHHHHHHHHHHHH--CCCCeEEEEEecHHHhHHHHHHcCCC----c--cCCceE
Confidence            654332 233445444433221  136788899999999  87547999999998888888877221    1  235544


Q ss_pred             EEecCCC-eeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCCCccccccccchhhhhhhHHHHHHHHHHH
Q psy16770        437 WRMDYKK-IKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIF  508 (554)
Q Consensus       437 ~~~~~~~-~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~~~~~~~~lp~~~de~~~~~~~r~~~~~~  508 (554)
                      ...+..+ .+|. +.+.        ..+.+.|.+|++++++|+..|..+++++|+-.+..+..+++..|.+++
T Consensus       297 vi~~~~~~~~y~-~~~~--------~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v  360 (462)
T TIGR01130       297 AIQDLEGNKKYP-MDQE--------EFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIV  360 (462)
T ss_pred             EEEeCCcccccC-CCcC--------CCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHh
Confidence            4445454 5674 3321        468899999999999999999888999998767777788888888743

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>KOG4277|consensus

Probab=99.98  E-value=2.6e-31  Score=251.48  Aligned_cols=296  Identities=13%  Similarity=0.201  Sum_probs=212.5

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPS  222 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~  222 (554)
                      ..+..|+|.||||||+|||+++|.|.++.-+|+..  .++++++||+..+.+++++||+| ||||++|++|..+.|.||+
T Consensus        41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqG-YPTIk~~kgd~a~dYRG~R  119 (468)
T KOG4277|consen   41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQG-YPTIKFFKGDHAIDYRGGR  119 (468)
T ss_pred             ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCC-CceEEEecCCeeeecCCCc
Confidence            46889999999999999999999999999999854  59999999999999999999998 9999999999999999886


Q ss_pred             ccHHHHHHHHHHhCCCCccccCCcccHH-HHHhhhhcCCceEEEEEecCCchhHHHHHHhhccCCceEEEEEEccCCCCh
Q psy16770        223 FSVQKMVEFFRLKLPYKLIVPLSATNVD-AFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSS  301 (554)
Q Consensus       223 ~~~~~i~~fl~~~~~~~~v~~~t~~~~~-~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~  301 (554)
                       ..++|++|..+...+- +..+++.+.+ .-++   ....+..++|.....|-...+..|+.  ..+.+++...   .++
T Consensus       120 -~Kd~iieFAhR~a~ai-I~pi~enQ~~fehlq---~Rhq~ffVf~Gtge~PL~d~fidAAS--e~~~~a~FfS---ase  189 (468)
T KOG4277|consen  120 -EKDAIIEFAHRCAAAI-IEPINENQIEFEHLQ---ARHQPFFVFFGTGEGPLFDAFIDAAS--EKFSVARFFS---ASE  189 (468)
T ss_pred             -cHHHHHHHHHhcccce-eeecChhHHHHHHHh---hccCceEEEEeCCCCcHHHHHHHHhh--hheeeeeeec---ccc
Confidence             7799999999988766 6666554432 2232   46889999998777766655656652  3444444432   356


Q ss_pred             hHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccccccchhhhhhcCCCCceEEEEEcCCCC-
Q psy16770        302 SVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSP-  380 (554)
Q Consensus       302 ~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~c~~~~lcvvl~~~~~~-  380 (554)
                      +++..++--+..|.+.+||+..-.    ++. +...+.|.+||+..++|..-..++..+.+..- .+++.++.+..+.. 
T Consensus       190 eVaPe~~~~kempaV~VFKDetf~----i~d-e~dd~dLseWinRERf~~fLa~dgflL~EiG~-sGKLVaLaVidEkhk  263 (468)
T KOG4277|consen  190 EVAPEENDAKEMPAVAVFKDETFE----IED-EGDDEDLSEWINRERFPGFLAADGFLLAEIGA-SGKLVALAVIDEKHK  263 (468)
T ss_pred             ccCCcccchhhccceEEEccceeE----EEe-cCchhHHHHHHhHhhccchhhcccchHHHhCc-CCceEEEEEeccccc
Confidence            676666544458999999975332    222 23556799999999999999998877777653 55776666654331 


Q ss_pred             -----cchhHHHHHHHHHhhccCCC-----CceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCCeeEEEec
Q psy16770        381 -----EHDASRHTLRRFAQESRFVH-----NNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLL  450 (554)
Q Consensus       381 -----~~~~~~~~l~~~a~~~~~~~-----~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ky~~~~  450 (554)
                           ++.+......++|+.  +++     ++++|+|+|+   .++++.+++..      ...|.+++.|.....|.+-+
T Consensus       264 ~nns~eh~~~~ki~eEaakd--~Rd~pdfh~dFQF~hlDG---nD~~nqilM~a------ls~P~l~i~NtsnqeYfLse  332 (468)
T KOG4277|consen  264 FNNSSEHREFHKIAEEAAKD--LRDHPDFHNDFQFAHLDG---NDLANQILMAA------LSEPHLFIFNTSNQEYFLSE  332 (468)
T ss_pred             cCCcchhHHHHHHHHHHHHH--HHhChhhhhhceeeccch---hHHHHHHHHHh------hcCCeEEEEecCchheeecc
Confidence                 222233344444444  442     3699999999   45566553332      35565666677888886543


Q ss_pred             CCCCCcccccchhhHHHHHHHHhh
Q psy16770        451 GDAVDDWKDYNTTKDRLDAGLRSL  474 (554)
Q Consensus       451 ~~~~~~~~~~~~t~e~l~~fl~~~  474 (554)
                      ..      ..-.+.+.+..||+.-
T Consensus       333 ~d------~qikniedilqFient  350 (468)
T KOG4277|consen  333 DD------PQIKNIEDILQFIENT  350 (468)
T ss_pred             CC------hhhhhHHHHHHHHhcc
Confidence            21      2345778888888873

>PTZ00102 disulphide isomerase; Provisional

Probab=99.97  E-value=5e-29  Score=269.81  Aligned_cols=335  Identities=16%  Similarity=0.193  Sum_probs=245.4

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC--CCEEEEEEEecCcHHHHHHhCCcCCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP--LGVGFFTVHVHNEQGLARRLGVGSQL  204 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~--~~v~~~~Vd~~~~~~l~~~~~v~~~~  204 (554)
                      .++.+|+.++|+..+   +.+++++|.||||||++|+++.|.|.++++.++.  .++.+++|||+.+..+|++++|.+ +
T Consensus        32 ~~v~~l~~~~f~~~i---~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~-~  107 (477)
T PTZ00102         32 EHVTVLTDSTFDKFI---TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRG-Y  107 (477)
T ss_pred             CCcEEcchhhHHHHH---hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCc-c
Confidence            468899999999988   4567999999999999999999999999988863  259999999999999999999998 9


Q ss_pred             CcceeccCCeEEEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-c
Q psy16770        205 PQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-K  283 (554)
Q Consensus       205 Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~  283 (554)
                      ||+++|++|+.+.|.|+ ++++.|++|+.+.+.+++..+.+.+++..+...   .....++.|.+........+..++ .
T Consensus       108 Pt~~~~~~g~~~~y~g~-~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~f~~~a~~  183 (477)
T PTZ00102        108 PTIKFFNKGNPVNYSGG-RTADGIVSWIKKLTGPAVTEVESASEIKLIAKK---IFVAFYGEYTSKDSELYKKFEEVADK  183 (477)
T ss_pred             cEEEEEECCceEEecCC-CCHHHHHHHHHHhhCCCceeecCHHHHHHhhcc---CcEEEEEEeccCCcHHHHHHHHHHHh
Confidence            99999999988766655 689999999999999884444344555554421   233444456555554444444444 6


Q ss_pred             cCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccccccchhhhhh
Q psy16770        284 HRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDA  363 (554)
Q Consensus       284 ~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~  363 (554)
                      +++...|+.+.     +.        .  .+.+++++......   .+.+..+...|.+||+.+.+|.+.+++..++...
T Consensus       184 ~~~~~~F~~~~-----~~--------~--~~~~~~~~~~~~~~---~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~  245 (477)
T PTZ00102        184 HREHAKFFVKK-----HE--------G--KNKIYVLHKDEEGV---ELFMGKTKEELEEFVSTESFPLFAEINAENYRRY  245 (477)
T ss_pred             ccccceEEEEc-----CC--------C--CCcEEEEecCCCCc---ccCCCCCHHHHHHHHHHcCCCceeecCccchHHH
Confidence            67778887662     11        1  46788887644432   2223457788999999999999999998876544


Q ss_pred             cCCCCceEEEEEcCCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchH-HHHhhCCCCCCccccceEEEEEEecCC
Q psy16770        364 VCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPE-FVNALTSPEDSSEISLHIAAMWRMDYK  442 (554)
Q Consensus       364 ~c~~~~lcvvl~~~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~  442 (554)
                      .  ..+..++++....++.++..+.++++|++  ++++ +.|+|+|+.+... +++.|-.        ..+|.+...+. 
T Consensus       246 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~-~~f~~vd~~~~~~~~~~~~gi--------~~~P~~~i~~~-  311 (477)
T PTZ00102        246 I--SSGKDLVWFCGTTEDYDKYKSVVRKVARK--LREK-YAFVWLDTEQFGSHAKEHLLI--------EEFPGLAYQSP-  311 (477)
T ss_pred             h--cCCccEEEEecCHHHHHHHHHHHHHHHHh--ccCc-eEEEEEechhcchhHHHhcCc--------ccCceEEEEcC-
Confidence            3  22344455544444556788899999999  9754 9999999987665 5666511        13454444332 


Q ss_pred             CeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCCCccccccccchhhhhhhHHHHHHHHHH
Q psy16770        443 KIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRI  507 (554)
Q Consensus       443 ~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~~~~~~~~lp~~~de~~~~~~~r~~~~~  507 (554)
                      ..+|. +.+.     .....|.+.|.+|++++++|+..+..+++++|+-++..++.+++..|.+.
T Consensus       312 ~~~y~-~~~~-----~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~  370 (477)
T PTZ00102        312 AGRYL-LPPA-----KESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEI  370 (477)
T ss_pred             CcccC-CCcc-----ccccCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHH
Confidence            34664 3321     00125789999999999999999888888999887888888888888874

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.94  E-value=5.9e-25  Score=213.88  Aligned_cols=327  Identities=16%  Similarity=0.187  Sum_probs=227.6

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccc-------hHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQV-------EPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLG  199 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l-------~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~  199 (554)
                      +.+++||.+||.+++   +......|.||.|-- ..+..       +-.++-+|+.+...|++||.||..++..+|+++|
T Consensus        34 DRVi~LneKNfk~~l---Kkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLg  109 (383)
T PF01216_consen   34 DRVIDLNEKNFKRAL---KKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLG  109 (383)
T ss_dssp             --CEEE-TTTHHHHH---HH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT
T ss_pred             cceEEcchhHHHHHH---HhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcC
Confidence            458999999999988   456677888887763 33332       2345667888888899999999999999999999


Q ss_pred             CcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHhCCCCccccCCc-ccHHHHHhhhhcCCceEEEEEecCCchhHHHH
Q psy16770        200 VGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSA-TNVDAFLDNWREDNKVHALLFQRSLPVRLRYL  278 (554)
Q Consensus       200 v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~-~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~  278 (554)
                      +.. .++|.+|++|+.+.|.| .++++.|+.|+...+..+ |.+++. .++..|-.-  ++...++++|.+..+..+..+
T Consensus       110 v~E-~~SiyVfkd~~~IEydG-~~saDtLVeFl~dl~edP-VeiIn~~~e~~~Fe~i--ed~~klIGyFk~~~s~~yk~F  184 (383)
T PF01216_consen  110 VEE-EGSIYVFKDGEVIEYDG-ERSADTLVEFLLDLLEDP-VEIINNKHELKAFERI--EDDIKLIGYFKSEDSEHYKEF  184 (383)
T ss_dssp             --S-TTEEEEEETTEEEEE-S---SHHHHHHHHHHHHSSS-EEEE-SHHHHHHHHH----SS-EEEEE-SSTTSHHHHHH
T ss_pred             ccc-cCcEEEEECCcEEEecC-ccCHHHHHHHHHHhcccc-hhhhcChhhhhhhhhc--ccceeEEEEeCCCCcHHHHHH
Confidence            996 99999999999999995 569999999999999988 665544 566666542  345455556777677788888


Q ss_pred             HHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccccccc
Q psy16770        279 INAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISS  357 (554)
Q Consensus       279 ~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~  357 (554)
                      ..|+ .+.+.++|..+     .+..++++++++  ...+-+|++..++|.. +.....+...|.+||+.|+-|.+.+|+.
T Consensus       185 eeAAe~F~p~IkFfAt-----fd~~vAk~L~lK--~nev~fyepF~~~pi~-ip~~p~~e~e~~~fi~~h~rptlrkl~~  256 (383)
T PF01216_consen  185 EEAAEHFQPYIKFFAT-----FDKKVAKKLGLK--LNEVDFYEPFMDEPIT-IPGKPYTEEELVEFIEEHKRPTLRKLRP  256 (383)
T ss_dssp             HHHHHHCTTTSEEEEE------SHHHHHHHT-S--TT-EEEE-TTSSSEEE-ESSSS--HHHHHHHHHHT-S-SEEE--G
T ss_pred             HHHHHhhcCceeEEEE-----ecchhhhhcCcc--ccceeeeccccCCCcc-CCCCCCCHHHHHHHHHHhchhHhhhCCh
Confidence            8888 88999999998     799999999997  6789999999888863 5556778889999999999999999999


Q ss_pred             hhhhhhcCC-CCceEEEEEcC-CCCcchhHHHHHHHHHhhccCCCC-ceEEEEEecccchHHHHhhCCCCC-CccccceE
Q psy16770        358 QSMLDAVCP-VKKLCVVLFSE-DSPEHDASRHTLRRFAQESRFVHN-NIAFMYVFIEKQPEFVNALTSPED-SSEISLHI  433 (554)
Q Consensus       358 ~~~~~~~c~-~~~lcvvl~~~-~~~~~~~~~~~l~~~a~~~~~~~~-~v~F~~vd~~~q~~~~~~~~~~~~-~~~~~~~~  433 (554)
                      .++++..-. ..+..+|.|+. ++++.-+..+.|+++|+.  +++. .+.++|||-+..+-+....-...+ ... .|++
T Consensus       257 ~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~--nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~-~PqI  333 (383)
T PF01216_consen  257 EDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARD--NTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLS-RPQI  333 (383)
T ss_dssp             GGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHH--CTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TT-S-EE
T ss_pred             hhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHh--cCcCCceeEEEECCCCCchhHHHHHhhcCcccc-CCce
Confidence            999886652 23788888885 456778889999999998  6543 699999999887754443311112 111 2788


Q ss_pred             EEEEEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770        434 AAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN  480 (554)
Q Consensus       434 ~~v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~  480 (554)
                      -+|...+.+..++.+-+..       ..-|.+.|+.|++++++|++.
T Consensus       334 GvVnvtdadsvW~dm~d~~-------d~pt~~~LedWieDVlsg~i~  373 (383)
T PF01216_consen  334 GVVNVTDADSVWMDMDDDD-------DLPTAEELEDWIEDVLSGKIN  373 (383)
T ss_dssp             EEEETTTSEEEEC-STTTS-------S---HHHHHHHHHHHHCTCCT
T ss_pred             eEEeccccccchhccCCcc-------cCCcHHHHHHHHHHHhcCCCC
Confidence            7877766666666543321       123889999999999999986

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>KOG0912|consensus

Probab=99.92  E-value=4.6e-24  Score=203.31  Aligned_cols=315  Identities=15%  Similarity=0.168  Sum_probs=212.5

Q ss_pred             cccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhC----CCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS----PLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       132 Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~----~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +|..|++..+   .+...++|.|||+||+.++.+.|.|+++|..++    ...+..|+|||+++..++.+|.|+. |||+
T Consensus         1 lt~~N~~~il---~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~K-yPTl   76 (375)
T KOG0912|consen    1 LTSENIDSIL---DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINK-YPTL   76 (375)
T ss_pred             CccccHHHhh---ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhcccc-Ccee
Confidence            4567777777   468899999999999999999999999998876    2359999999999999999999995 9999


Q ss_pred             eeccCCeEE--EEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-cc
Q psy16770        208 ALLTDGRTS--FFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KH  284 (554)
Q Consensus       208 ~~~~~g~~~--~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~  284 (554)
                      ++|+||...  +|.| .|+.+.|.+|+++++..++-+..+-+++.....   .....++++|.++.++++..+..++ -+
T Consensus        77 KvfrnG~~~~rEYRg-~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~---p~K~~vIgyF~~kdspey~~~~kva~~l  152 (375)
T KOG0912|consen   77 KVFRNGEMMKREYRG-QRSVEALIEFIEKQLSDPINEFESLDQLQNLDI---PSKRTVIGYFPSKDSPEYDNLRKVASLL  152 (375)
T ss_pred             eeeeccchhhhhhcc-chhHHHHHHHHHHHhccHHHHHHhHHHHHhhhc---cccceEEEEeccCCCchHHHHHHHHHHH
Confidence            999999864  5665 469999999999999887322223344444432   1356777888888999888877666 66


Q ss_pred             CCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCCh-hHHHhHHhcCCCcccccccchhhhhh
Q psy16770        285 RTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPV-PTLQDITDNNPYLTLPRISSQSMLDA  363 (554)
Q Consensus       285 ~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~-~~l~~fi~~~~~~~v~~lt~~~~~~~  363 (554)
                      ++++.|-+--      .++.....-.  .-.+++|.++...+. ..+.|.++. ..+..||.....|+|.|+|-+|..+.
T Consensus       153 r~dc~f~V~~------gD~~~~~~~~--~~~~~~f~pd~~~~~-~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EEL  223 (375)
T KOG0912|consen  153 RDDCVFLVGF------GDLLKPHEPP--GKNILVFDPDHSEPN-HEFLGSMTNFDELKQWIQDKCVPLVREITFENAEEL  223 (375)
T ss_pred             hhccEEEeec------cccccCCCCC--CCceEEeCCCcCCcC-cccccccccHHHHHHHHHhcchhhhhhhhhccHHHH
Confidence            8888875441      1222222211  122677776544443 256777755 48999999999999999998887655


Q ss_pred             cCCCCceEEEEEcCCCCcchhHHHHHHHHHhhccCC-CCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCC
Q psy16770        364 VCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFV-HNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYK  442 (554)
Q Consensus       364 ~c~~~~lcvvl~~~~~~~~~~~~~~l~~~a~~~~~~-~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  442 (554)
                      .- .+...+|+|-..  +..+..+.|.......... ...+.|...|+.....-+.-|-+   +.   ..+|++.+ +.-
T Consensus       224 tE-EGlPflILf~~k--dD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgK---s~---~DLPviaI-DsF  293 (375)
T KOG0912|consen  224 TE-EGLPFLILFRKK--DDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGK---SP---DDLPVIAI-DSF  293 (375)
T ss_pred             hh-cCCceEEEEecC--CcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCC---Cc---ccCcEEEe-ecc
Confidence            43 222334444332  2233444555443322111 12389999999776655555511   12   36776655 333


Q ss_pred             CeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770        443 KIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN  480 (554)
Q Consensus       443 ~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~  480 (554)
                      +.-|-..+.       ..-...-.|.+|+.++-+|+..
T Consensus       294 ~Hmylfp~f-------~di~~pGkLkqFv~DL~sgklH  324 (375)
T KOG0912|consen  294 RHMYLFPDF-------NDINIPGKLKQFVADLHSGKLH  324 (375)
T ss_pred             ceeeecCch-------hhhcCccHHHHHHHHHhCchhh
Confidence            444421111       0112445899999999999864

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=5.4e-25  Score=220.94  Aligned_cols=73  Identities=47%  Similarity=0.774  Sum_probs=69.7

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCCCC
Q psy16770         17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGF   89 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~~~   89 (554)
                      ...|||+||||+++||.+|||+|||+||++||||+|+ +++|+++|++|++||+|||||++|++||+||..+..
T Consensus         2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            4689999999999999999999999999999999999 889999999999999999999999999999998733

>KOG0713|consensus

Probab=99.91  E-value=1.1e-24  Score=212.62  Aligned_cols=176  Identities=25%  Similarity=0.297  Sum_probs=115.0

Q ss_pred             HHHHhhccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770          8 LNVLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTT   86 (554)
Q Consensus         8 ~~~~~~~~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~   86 (554)
                      ++...+.....+|||+||||+++|+..|||+|||+||+++|||||+ +|.|.+.|++|+.||+|||||++|+.||.+|..
T Consensus         5 ~~~~~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEe   84 (336)
T KOG0713|consen    5 KLSGAEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEE   84 (336)
T ss_pred             hhhhhhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHh
Confidence            3444444567899999999999999999999999999999999998 689999999999999999999999999999987


Q ss_pred             CCCCCC--CCccccccCCCCCCCCccccCCCCCCccccccccccccccccccccccccCCCCCCcEEEEEEccccccccc
Q psy16770         87 DGFSGQ--DSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQ  164 (554)
Q Consensus        87 ~~~~~~--~~~~~~~~~~~~~~f~~~f~~~~~f~f~~~~~~~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~  164 (554)
                      +-....  .+.+.    .++..|.-.|+.   |+++-.+...+.-            .   ....+++.++.-.|.||-.
T Consensus        85 gL~~~~~~~~~g~----~~~~~f~~~f~d---fg~~~~g~~~~e~------------~---~~g~~V~~~~e~~~~h~y~  142 (336)
T KOG0713|consen   85 GLKDENKDGEGGG----GGNDIFSAFFGD---FGVTVGGNPLEEA------------L---PKGSDVSSDLEKQLEHFYM  142 (336)
T ss_pred             hhcccccccccCC----cccchHHHhhcc---cccccCCCcccCC------------C---CCCceEEeehhhchhhhhc
Confidence            622211  11110    112222222222   1111111111000            1   3457888888899999998


Q ss_pred             chHHHHHHHHHhCCCCEEEEEEEecCcHHHH-HHhCCcCCCCcce
Q psy16770        165 VEPIFKKLMDELSPLGVGFFTVHVHNEQGLA-RRLGVGSQLPQIA  208 (554)
Q Consensus       165 l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~-~~~~v~~~~Pti~  208 (554)
                      ..+.+....+....  ..-++..|.-...++ +..+... ++.+.
T Consensus       143 ~~~~e~~r~~~v~~--~~~g~~~~~~~~~~~~~~~~~g~-~~~~q  184 (336)
T KOG0713|consen  143 GNFVEEVREKGVYK--PAPGTRKCNCRLEMFTQQEGPGR-FQMLQ  184 (336)
T ss_pred             ccHHHHHhccCcee--ecCcccccCChhhheeeccCCCh-hhhhh
Confidence            88888876654432  222344444433444 4444432 44444

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.83  E-value=5.4e-21  Score=164.17  Aligned_cols=102  Identities=18%  Similarity=0.230  Sum_probs=89.0

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHH-HHhCCcCCCCc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA-RRLGVGSQLPQ  206 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~-~~~~v~~~~Pt  206 (554)
                      .+++|+.+||++.+.-.+.+++++|+||||||++|+.+.|.|+++++.+++. +.|++|||+++..+| ++|+|.+ +||
T Consensus        10 ~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~~l~~~~~~I~~-~PT   87 (113)
T cd03006          10 PVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQGKCRKQKHFFY-FPV   87 (113)
T ss_pred             CeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCChHHHHHhcCCcc-cCE
Confidence            5899999999987422367889999999999999999999999999999874 999999999999999 5899997 999


Q ss_pred             ceeccCCeE-EEEeCCcccHHHHHHHH
Q psy16770        207 IALLTDGRT-SFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       207 i~~~~~g~~-~~y~~g~~~~~~i~~fl  232 (554)
                      +++|++|+. ..|. |.++++.|+.|+
T Consensus        88 l~lf~~g~~~~~y~-G~~~~~~i~~~~  113 (113)
T cd03006          88 IHLYYRSRGPIEYK-GPMRAPYMEKFV  113 (113)
T ss_pred             EEEEECCccceEEe-CCCCHHHHHhhC
Confidence            999999875 4555 456889998874

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>KOG0712|consensus

Probab=99.83  E-value=7.3e-21  Score=188.56  Aligned_cols=115  Identities=33%  Similarity=0.534  Sum_probs=86.1

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCCCCCCCCCcc
Q psy16770         17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSGQDSAS   96 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~~~~~   96 (554)
                      .+..+|.||||+++||.+|||+|||+||++||||||++  +.++|++|.+||++||||++|..||++|..+-..++.+. 
T Consensus         2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~-   78 (337)
T KOG0712|consen    2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGG-   78 (337)
T ss_pred             cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCC-
Confidence            46789999999999999999999999999999999976  789999999999999999999999999987632221211 


Q ss_pred             ccccCCCCCCCCccccCC-CCCCcccccccccccccccccccccc
Q psy16770         97 RNFHNHMYNPFDDVFSEG-FNFPFEEHDISLFHKLSTTHWNFEKN  140 (554)
Q Consensus        97 ~~~~~~~~~~f~~~f~~~-~~f~f~~~~~~~~~~~~Lt~~~F~~~  140 (554)
                            ++..|.+.|+.+ +..+-..++.+..|.+.+|.+++...
T Consensus        79 ------g~~~f~~~F~~g~~~~~~~~rg~~~~~~~~~~Le~~y~G  117 (337)
T KOG0712|consen   79 ------GFGGFSQFFGFGGNGGRGRQRGKDVVHQLKVTLEELYMG  117 (337)
T ss_pred             ------CCccHHHhccCCCcCccccccCCCceEEEEEEHHHhhcC
Confidence                  111144445533 11111124566678888887776543

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=8.6e-20  Score=189.10  Aligned_cols=70  Identities=47%  Similarity=0.822  Sum_probs=67.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||++||||++|+.||++|..+
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~   72 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAA   72 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchh
Confidence            5799999999999999999999999999999999988889999999999999999999999999999764

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.80  E-value=5.2e-20  Score=155.88  Aligned_cols=100  Identities=19%  Similarity=0.333  Sum_probs=89.6

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+++||.++|+..+.   .+++++|.||++||++|+.+.|.|+++++.+++. +.|++|||++++.+|++++|++ +||+
T Consensus         2 ~~~~l~~~~f~~~v~---~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~~~~~~~~~~v~~-~Pt~   76 (101)
T cd03003           2 EIVTLDRGDFDAAVN---SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGDDRMLCRSQGVNS-YPSL   76 (101)
T ss_pred             CeEEcCHhhHHHHhc---CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCccHHHHHHcCCCc-cCEE
Confidence            467899999999883   4589999999999999999999999999999874 9999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHH
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl  232 (554)
                      ++|++|+....+.|.++.++|++|+
T Consensus        77 ~~~~~g~~~~~~~G~~~~~~l~~f~  101 (101)
T cd03003          77 YVFPSGMNPEKYYGDRSKESLVKFA  101 (101)
T ss_pred             EEEcCCCCcccCCCCCCHHHHHhhC
Confidence            9999998766666667889998873

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.80  E-value=8.2e-20  Score=157.38  Aligned_cols=107  Identities=42%  Similarity=0.825  Sum_probs=97.2

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      +.+..+|.++|++.+...+.+++++|.||||||++|+.+.|.|+++++.+++.++.+++|||+.++.+|++++|.+ +||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~-~Pt   82 (111)
T cd02963           4 DYKYSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHS-VPA   82 (111)
T ss_pred             chhheeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCcc-CCE
Confidence            4567789999998887666789999999999999999999999999999986569999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHH
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRL  234 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~  234 (554)
                      +++|++|+...+..|..+.+.|++|+.+
T Consensus        83 ~~i~~~g~~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          83 IVGIINGQVTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             EEEEECCEEEEEecCCCCHHHHHHHHhc
Confidence            9999999988887787788999999975

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1e-19  Score=188.46  Aligned_cols=70  Identities=40%  Similarity=0.768  Sum_probs=66.3

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||+||||+++||.+|||+|||+||++||||+++ ++.|+++|++|++||+||+||.+|+.||++|..+
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~   72 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG   72 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccc
Confidence            479999999999999999999999999999999997 5778999999999999999999999999999764

>KOG0191|consensus

Probab=99.79  E-value=2.5e-18  Score=180.51  Aligned_cols=210  Identities=18%  Similarity=0.318  Sum_probs=161.5

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      ...++..+|...+.  +.+.+++|+||+|||+||+++.|+|++++..+++ .+.++.|||+.+.++|++|+|.+ |||++
T Consensus        31 ~~~~~~~~~~~~~~--~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~~~~y~i~g-fPtl~  106 (383)
T KOG0191|consen   31 VSELTLDSFFDFLL--KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDLCEKYGIQG-FPTLK  106 (383)
T ss_pred             hhhhhccccHHHhh--ccCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHHHHhcCCcc-CcEEE
Confidence            44455666766665  5778999999999999999999999999999998 59999999999999999999998 99999


Q ss_pred             eccCC-eEEEEeCCcccHHHHHHHHHHhCCCCc-------cccCCcccHHHHHhhhhcCCceEEEEEe------cCCchh
Q psy16770        209 LLTDG-RTSFFKEPSFSVQKMVEFFRLKLPYKL-------IVPLSATNVDAFLDNWREDNKVHALLFQ------RSLPVR  274 (554)
Q Consensus       209 ~~~~g-~~~~y~~g~~~~~~i~~fl~~~~~~~~-------v~~~t~~~~~~fl~~~~~~~~~~v~~f~------~~~~~~  274 (554)
                      +|.+| .++.|.+ .++.+.+.+|+.+.+.+..       +..++..++......  .+..+.|.+|.      ....+.
T Consensus       107 ~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~--~~~~~lv~f~aPwc~~ck~l~~~  183 (383)
T KOG0191|consen  107 VFRPGKKPIDYSG-PRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKD--SDADWLVEFYAPWCGHCKKLAPE  183 (383)
T ss_pred             EEcCCCceeeccC-cccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhc--cCcceEEEEeccccHHhhhcChH
Confidence            99988 5677776 4688999999998876542       333455566665543  23444444543      223345


Q ss_pred             HHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCc
Q psy16770        275 LRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYL  350 (554)
Q Consensus       275 ~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~  350 (554)
                      +...+..++....+.++.++++  ....++.+++|.. +||+++|+++.. + ...+.+..+...|..|+....-.
T Consensus       184 ~~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~-~Pt~~~f~~~~~-~-~~~~~~~R~~~~i~~~v~~~~~~  254 (383)
T KOG0191|consen  184 WEKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRG-YPTLKLFPPGEE-D-IYYYSGLRDSDSIVSFVEKKERR  254 (383)
T ss_pred             HHHHHHHhccCcceEEEeeccc--hHHHHhhhhcccC-CceEEEecCCCc-c-cccccccccHHHHHHHHHhhcCC
Confidence            5555554544688999999887  6788999999997 999999998666 2 23566777888999999877555

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.79  E-value=1.3e-19  Score=154.76  Aligned_cols=98  Identities=16%  Similarity=0.174  Sum_probs=86.2

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEc--cccc---ccccchHHHHHHHHHhCCCCEEEEEEEe-----cCcHHHHHHh
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYS--DWCF---ACLQVEPIFKKLMDELSPLGVGFFTVHV-----HNEQGLARRL  198 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya--~wC~---~C~~l~p~~~~~a~~l~~~~v~~~~Vd~-----~~~~~l~~~~  198 (554)
                      +++||..||++.|   +.++.+||+|||  |||+   ||++++|+|.+++..     +.+|+|||     +++.+||++|
T Consensus         3 ~v~L~~~nF~~~v---~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~-----v~lakVd~~d~~~~~~~~L~~~y   74 (116)
T cd03007           3 CVDLDTVTFYKVI---PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD-----LLVAEVGIKDYGEKLNMELGERY   74 (116)
T ss_pred             eeECChhhHHHHH---hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc-----eEEEEEecccccchhhHHHHHHh
Confidence            6889999999998   577899999999  9999   999999999887763     88999999     5689999999


Q ss_pred             CCc--CCCCcceeccCCe---EEEEeCCcccHHHHHHHHHHh
Q psy16770        199 GVG--SQLPQIALLTDGR---TSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       199 ~v~--~~~Pti~~~~~g~---~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      +|+  + ||||++|++|.   +..|.|+.|+.++|++||.++
T Consensus        75 ~I~~~g-yPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          75 KLDKES-YPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CCCcCC-CCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            999  9 99999999884   467776436999999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.78  E-value=5.2e-19  Score=149.79  Aligned_cols=103  Identities=27%  Similarity=0.514  Sum_probs=94.1

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      |..+|.++|++.+..  ++++++|.||++||++|+.+.|.|+++++.+.+ ++.++.|||++++.+|++++|.+ +||++
T Consensus         1 v~~lt~~~f~~~i~~--~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~-~Pt~~   76 (103)
T PF00085_consen    1 VIVLTDENFEKFINE--SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKS-VPTII   76 (103)
T ss_dssp             SEEESTTTHHHHHTT--TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSS-SSEEE
T ss_pred             CEECCHHHHHHHHHc--cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCC-CCEEE
Confidence            467899999999963  478999999999999999999999999999987 79999999999999999999997 99999


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      +|++|+....+.|.++.+.|.+||+++
T Consensus        77 ~~~~g~~~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   77 FFKNGKEVKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             EEETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred             EEECCcEEEEEECCCCHHHHHHHHHcC
Confidence            999999876666667999999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.78  E-value=5.5e-19  Score=152.77  Aligned_cols=105  Identities=18%  Similarity=0.270  Sum_probs=89.9

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccc--cc--cchHHHHHHHHHh-CCCCEEEEEEEecCcHHHHHHhCCcC
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFA--CL--QVEPIFKKLMDEL-SPLGVGFFTVHVHNEQGLARRLGVGS  202 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~--C~--~l~p~~~~~a~~l-~~~~v~~~~Vd~~~~~~l~~~~~v~~  202 (554)
                      .+.+||.+||++.|.  +++.++++.|+++||++  |+  .++|.+.++|.++ +..++.|++||++++++||++|||++
T Consensus        10 ~v~~lt~~nF~~~v~--~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~   87 (120)
T cd03065          10 RVIDLNEKNYKQVLK--KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE   87 (120)
T ss_pred             ceeeCChhhHHHHHH--hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence            588899999999996  56678888888889975  99  7788877777665 33369999999999999999999998


Q ss_pred             CCCcceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        203 QLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       203 ~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                       +||+++|++|+.+.|. |.++.+.|++|+.+.+
T Consensus        88 -iPTl~lfk~G~~v~~~-G~~~~~~l~~~l~~~~  119 (120)
T cd03065          88 -EDSIYVFKDDEVIEYD-GEFAADTLVEFLLDLI  119 (120)
T ss_pred             -ccEEEEEECCEEEEee-CCCCHHHHHHHHHHHh
Confidence             9999999999988855 4568899999998754

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=5.8e-19  Score=183.25  Aligned_cols=70  Identities=50%  Similarity=0.940  Sum_probs=67.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||+||||++.||.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|+.||++|..+
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   73 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAG   73 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccc
Confidence            4799999999999999999999999999999999988889999999999999999999999999999764

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.77  E-value=4.6e-19  Score=150.87  Aligned_cols=100  Identities=20%  Similarity=0.361  Sum_probs=87.0

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      +.+||.++|++.|.  +.+++++|.|||+||++|+++.|.|+++++.+.+ .+.+++|||++++++|++++|++ +||++
T Consensus         3 v~~l~~~~f~~~i~--~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~-~Pt~~   78 (104)
T cd03004           3 VITLTPEDFPELVL--NRKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKYESLCQQANIRA-YPTIR   78 (104)
T ss_pred             ceEcCHHHHHHHHh--cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCchHHHHHHcCCCc-ccEEE
Confidence            66789999999886  3456999999999999999999999999999976 49999999999999999999997 99999


Q ss_pred             eccCC-eEEEEeCCccc-HHHHHHHH
Q psy16770        209 LLTDG-RTSFFKEPSFS-VQKMVEFF  232 (554)
Q Consensus       209 ~~~~g-~~~~y~~g~~~-~~~i~~fl  232 (554)
                      +|.+| +....+.|.++ .++|.+|+
T Consensus        79 ~~~~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          79 LYPGNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             EEcCCCCCceEccCCCCCHHHHHhhC
Confidence            99887 65544445555 89998875

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=6.2e-19  Score=182.86  Aligned_cols=70  Identities=47%  Similarity=0.869  Sum_probs=67.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||++|+||.+|+.||++|..+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~   72 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTD   72 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcc
Confidence            4799999999999999999999999999999999988889999999999999999999999999999765

>KOG0910|consensus

Probab=99.77  E-value=5.1e-19  Score=154.76  Aligned_cols=106  Identities=17%  Similarity=0.352  Sum_probs=97.9

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      ....++..+|++.|.  +++.|++|+|||+||++|+.+.|..++++.++.+. +++++||.+++.+|+.+|+|.. +||+
T Consensus        44 ~~~~~s~~~~~~~Vi--~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~~~ela~~Y~I~a-vPtv  119 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKVI--NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDEHPELAEDYEISA-VPTV  119 (150)
T ss_pred             cccccCHHHHHHHHH--ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEccccccchHhhcceee-eeEE
Confidence            345678899999997  78899999999999999999999999999999884 9999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      ++|+||+..+...|..+.+.|.+++++.++
T Consensus       120 lvfknGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  120 LVFKNGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence            999999999888888898999999998764

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=7.1e-19  Score=183.16  Aligned_cols=70  Identities=41%  Similarity=0.803  Sum_probs=67.3

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||+||||+++||.+|||+|||+||++||||+++++.|+++|++|++||++|+||.+|+.||++|..+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~   72 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG   72 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc
Confidence            4799999999999999999999999999999999988889999999999999999999999999999865

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=6.4e-19  Score=182.81  Aligned_cols=70  Identities=41%  Similarity=0.802  Sum_probs=66.3

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||++|||+++||.+|||+|||+||++||||+++ ++.|+++|++|++||+||+||.+|+.||++|..+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   73 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG   73 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence            479999999999999999999999999999999997 4678999999999999999999999999999865

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.76  E-value=7.3e-19  Score=150.78  Aligned_cols=100  Identities=24%  Similarity=0.413  Sum_probs=86.8

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC-----CEEEEEEEecCcHHHHHHhCCcC
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL-----GVGFFTVHVHNEQGLARRLGVGS  202 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~-----~v~~~~Vd~~~~~~l~~~~~v~~  202 (554)
                      .+++||.++|++.+   +.+++++|.||||||++|+++.|.|+++++.+++.     .+.+++|||+.+..+|++++|++
T Consensus         2 ~v~~l~~~~f~~~i---~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~   78 (108)
T cd02996           2 EIVSLTSGNIDDIL---QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK   78 (108)
T ss_pred             ceEEcCHhhHHHHH---hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc
Confidence            46789999999987   45679999999999999999999999999887521     38999999999999999999997


Q ss_pred             CCCcceeccCCe-E-EEEeCCcccHHHHHHHH
Q psy16770        203 QLPQIALLTDGR-T-SFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       203 ~~Pti~~~~~g~-~-~~y~~g~~~~~~i~~fl  232 (554)
                       +||+++|++|+ . ..|. |.++.++|++|+
T Consensus        79 -~Ptl~~~~~g~~~~~~~~-g~~~~~~l~~fi  108 (108)
T cd02996          79 -YPTLKLFRNGMMMKREYR-GQRSVEALAEFV  108 (108)
T ss_pred             -CCEEEEEeCCcCcceecC-CCCCHHHHHhhC
Confidence             99999999998 3 4444 567889999885

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.5e-18  Score=180.14  Aligned_cols=70  Identities=49%  Similarity=0.879  Sum_probs=66.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||++|||+++||.++||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||.+|..+
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g   73 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG   73 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence            479999999999999999999999999999999997 4678899999999999999999999999999765

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.75  E-value=2.8e-18  Score=145.25  Aligned_cols=100  Identities=27%  Similarity=0.454  Sum_probs=87.6

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+++||.++|++.+.    + .++|.|||+||++|+.+.|.|+++++.+++.++.+++|||++++.+|++++|.+ +||+
T Consensus         2 ~v~~l~~~~f~~~~~----~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~-~Pt~   75 (101)
T cd02994           2 NVVELTDSNWTLVLE----G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTA-LPTI   75 (101)
T ss_pred             ceEEcChhhHHHHhC----C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcc-cCEE
Confidence            477899999998762    2 389999999999999999999999998876579999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHH
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRL  234 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~  234 (554)
                      +++++|+...+.| .++.++|.+|+.+
T Consensus        76 ~~~~~g~~~~~~G-~~~~~~l~~~i~~  101 (101)
T cd02994          76 YHAKDGVFRRYQG-PRDKEDLISFIEE  101 (101)
T ss_pred             EEeCCCCEEEecC-CCCHHHHHHHHhC
Confidence            9999998755554 5688999999863

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.75  E-value=1.6e-18  Score=181.32  Aligned_cols=68  Identities=40%  Similarity=0.750  Sum_probs=63.7

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ...|||+||||+++||.+|||+|||+||++||||++++   .++|++|++||++|+||.+|+.||++|..+
T Consensus        26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~   93 (421)
T PTZ00037         26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKEISRAYEVLSDPEKRKIYDEYGEEG   93 (421)
T ss_pred             cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence            46799999999999999999999999999999999864   589999999999999999999999999764

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=2.7e-18  Score=178.27  Aligned_cols=70  Identities=49%  Similarity=0.887  Sum_probs=65.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND--PTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~--~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||+||||+++||.+|||+|||+||++||||+++.  +.|+++|++|++||++|+||.+|+.||++|..+
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~   74 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG   74 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence            5799999999999999999999999999999999973  568899999999999999999999999999765

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.7e-18  Score=180.39  Aligned_cols=70  Identities=51%  Similarity=0.884  Sum_probs=67.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||++|||+++|+.++||+|||+||++||||+|+++.++++|++|++||++|+||.+|+.||++|..+
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~   71 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA   71 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence            4799999999999999999999999999999999988889999999999999999999999999999764

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=2.4e-18  Score=178.85  Aligned_cols=68  Identities=49%  Similarity=0.720  Sum_probs=65.8

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770         19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTT   86 (554)
Q Consensus        19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~   86 (554)
                      .|||+||||+++||.+|||+|||+||++||||+++++.|+++|++|++||++|+||.+|+.||++|..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            69999999999999999999999999999999999888999999999999999999999999999975

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.4e-18  Score=167.77  Aligned_cols=108  Identities=27%  Similarity=0.421  Sum_probs=103.9

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      +.++|..||+..|...+...|+||.||+|||++|+.+.|..++++.+++| ++.+++|||+.++.++.+|||++ +||++
T Consensus        25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~p~vAaqfgiqs-IPtV~  102 (304)
T COG3118          25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAEPMVAAQFGVQS-IPTVY  102 (304)
T ss_pred             ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcchhHHHHhCcCc-CCeEE
Confidence            88999999999999988888999999999999999999999999999998 59999999999999999999997 99999


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHhCCC
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~  238 (554)
                      +|++|+++.-+.|....+.|.+|+.+.++.
T Consensus       103 af~dGqpVdgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118         103 AFKDGQPVDGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             EeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence            999999999888888888999999999987

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=2.9e-18  Score=177.87  Aligned_cols=71  Identities=46%  Similarity=0.803  Sum_probs=66.7

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ...|||+||||+++||.+|||+|||+||++||||+++ ++.++++|++|++||++|+||.+|+.||++|..+
T Consensus         2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g   73 (366)
T PRK14294          2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG   73 (366)
T ss_pred             CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence            3579999999999999999999999999999999997 4678899999999999999999999999999765

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=3.4e-18  Score=177.80  Aligned_cols=70  Identities=47%  Similarity=0.826  Sum_probs=67.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||+||||+++|+.+|||+|||+||++||||+++++.|+++|++|++||++|+||.+|+.||++|..+
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   72 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG   72 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence            4799999999999999999999999999999999988889999999999999999999999999999765

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=3.5e-18  Score=178.29  Aligned_cols=70  Identities=50%  Similarity=0.836  Sum_probs=66.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||+||||+++||.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||.+|..+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   74 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAA   74 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccc
Confidence            479999999999999999999999999999999997 4678899999999999999999999999999764

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=3.3e-18  Score=177.03  Aligned_cols=69  Identities=45%  Similarity=0.793  Sum_probs=65.5

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      .|||++|||+++||.+|||+|||+||++||||+++ ++.|.++|++|++||++|+||.+|+.||++|..+
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~   72 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA   72 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch
Confidence            69999999999999999999999999999999997 4678899999999999999999999999999864

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.74  E-value=3.6e-18  Score=146.67  Aligned_cols=104  Identities=16%  Similarity=0.350  Sum_probs=90.4

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-cHHHHHH-hCCcCCCC
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-EQGLARR-LGVGSQLP  205 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-~~~l~~~-~~v~~~~P  205 (554)
                      .++++|.++|+..+...+.+++++|.||++||++|+++.|.|+++++.+++.++.++.|||+. +..+|.+ ++|++ +|
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~-~P   80 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKS-FP   80 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCc-CC
Confidence            478899999999986656788999999999999999999999999999987679999999998 6888874 99997 99


Q ss_pred             cceeccCCe--EEEEeCCcccHHHHHHHH
Q psy16770        206 QIALLTDGR--TSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       206 ti~~~~~g~--~~~y~~g~~~~~~i~~fl  232 (554)
                      |+++|.+|.  ...|.|+.++.++|++|+
T Consensus        81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            999997653  567776557899999885

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.74  E-value=5e-18  Score=162.75  Aligned_cols=108  Identities=22%  Similarity=0.415  Sum_probs=97.8

Q ss_pred             ccccccccccccccccCCC--CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKS--YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQL  204 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~--~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~  204 (554)
                      ..+++||.++|++.+....  .+++|+|+||||||++|+++.|.|+++++++++ .+.+++|||++++.+|++|+|++ +
T Consensus        30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~~~l~~~~~I~~-~  107 (224)
T PTZ00443         30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRALNLAKRFAIKG-Y  107 (224)
T ss_pred             CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcccHHHHHHcCCCc-C
Confidence            4689999999999875321  357999999999999999999999999999987 49999999999999999999997 9


Q ss_pred             CcceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        205 PQIALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       205 Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ||+++|.+|+.+.+.+|.++.++|.+|+.+..
T Consensus       108 PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~  139 (224)
T PTZ00443        108 PTLLLFDKGKMYQYEGGDRSTEKLAAFALGDF  139 (224)
T ss_pred             CEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            99999999999999888889999999998775

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.73  E-value=6.7e-18  Score=174.89  Aligned_cols=68  Identities=51%  Similarity=0.905  Sum_probs=65.4

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        20 d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      |||++|||+++|+.+|||+|||+||++||||+++++.+.++|++|++||++|+|+.+|+.||.+|..+
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~   68 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG   68 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence            79999999999999999999999999999999987788999999999999999999999999999865

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=6.5e-18  Score=176.13  Aligned_cols=70  Identities=49%  Similarity=0.872  Sum_probs=66.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||++|||+++|+.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||++|..+
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~   73 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD   73 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence            479999999999999999999999999999999997 4678999999999999999999999999999765

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=4.1e-18  Score=171.23  Aligned_cols=70  Identities=50%  Similarity=0.867  Sum_probs=67.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||+||||+++||.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|+.||++|..+
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~   72 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA   72 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence            4799999999999999999999999999999999988889999999999999999999999999999864

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=1.6e-17  Score=172.86  Aligned_cols=70  Identities=47%  Similarity=0.852  Sum_probs=66.0

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||+||||+++||.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||++|..+
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~   73 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAA   73 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccc
Confidence            479999999999999999999999999999999997 4678899999999999999999999999999765

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.72  E-value=1.2e-17  Score=141.28  Aligned_cols=100  Identities=21%  Similarity=0.420  Sum_probs=87.0

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC--CCEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP--LGVGFFTVHVHNEQGLARRLGVGSQLP  205 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~--~~v~~~~Vd~~~~~~l~~~~~v~~~~P  205 (554)
                      ++++||.++|++.+.    +++++|.|||+||++|+.+.|.|+++++.+++  ..+.+++|||+++..+|++++|.+ +|
T Consensus         1 ~~~~l~~~~f~~~~~----~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~P   75 (102)
T cd03005           1 GVLELTEDNFDHHIA----EGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRG-YP   75 (102)
T ss_pred             CeeECCHHHHHHHhh----cCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCc-CC
Confidence            467899999999984    23699999999999999999999999999976  359999999999999999999997 99


Q ss_pred             cceeccCCeEEEEeCCcccHHHHHHHH
Q psy16770        206 QIALLTDGRTSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       206 ti~~~~~g~~~~y~~g~~~~~~i~~fl  232 (554)
                      |+++|++|+....+.|.++.++|.+|+
T Consensus        76 t~~~~~~g~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          76 TLLLFKDGEKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence            999999998765454566888888875

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.71  E-value=1.8e-17  Score=142.13  Aligned_cols=99  Identities=23%  Similarity=0.418  Sum_probs=87.2

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC--cHHHHHHhCCcCCCCc
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--EQGLARRLGVGSQLPQ  206 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~--~~~l~~~~~v~~~~Pt  206 (554)
                      +++|+.++|++.|.  +.+++++|.|||+||++|+++.|.|+++++.+.+ .+.++.|||+.  +..+|++++|++ +||
T Consensus         2 v~~l~~~~~~~~i~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~~~~~~~~~i~~-~Pt   77 (109)
T cd03002           2 VYELTPKNFDKVVH--NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKNKPLCGKYGVQG-FPT   77 (109)
T ss_pred             eEEcchhhHHHHHh--cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCccccHHHHHHcCCCc-CCE
Confidence            57899999999986  4567899999999999999999999999999986 48999999999  899999999997 999


Q ss_pred             ceeccCCe------EEEEeCCcccHHHHHHHH
Q psy16770        207 IALLTDGR------TSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       207 i~~~~~g~------~~~y~~g~~~~~~i~~fl  232 (554)
                      +++|.+|+      ...|. |.++.++|++|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~-G~~~~~~l~~fi  108 (109)
T cd03002          78 LKVFRPPKKASKHAVEDYN-GERSAKAIVDFV  108 (109)
T ss_pred             EEEEeCCCccccccccccc-CccCHHHHHHHh
Confidence            99998775      34455 556889999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=8.9e-18  Score=175.30  Aligned_cols=69  Identities=45%  Similarity=0.717  Sum_probs=65.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTT   86 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~   86 (554)
                      ..|||+||||+++|+.+|||+|||+||++||||+++ ++.|+++|++|++||++||||++|+.||++|..
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~   77 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL   77 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence            579999999999999999999999999999999997 567899999999999999999999999999863

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=1.4e-17  Score=173.43  Aligned_cols=70  Identities=46%  Similarity=0.823  Sum_probs=67.3

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||++|||+++||.+|||+|||+||++||||+|+++.|+++|++|++||++|+||.+|+.||++|..+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g   73 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG   73 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence            5799999999999999999999999999999999988889999999999999999999999999999764

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.70  E-value=1.5e-17  Score=128.25  Aligned_cols=62  Identities=56%  Similarity=0.989  Sum_probs=59.2

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--HHHHHHHHHHHHHHcCChHHHHhhh
Q psy16770         20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT--AQEKFLQLTEAYNILSDAERRKQYD   81 (554)
Q Consensus        20 d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~--~~~~~~~i~~Ay~~L~~~~~r~~yd   81 (554)
                      |||+||||+++++.++||++|+++++++|||+++...  +.+.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            6899999999999999999999999999999987655  8899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK09381 trxA thioredoxin; Provisional

Probab=99.70  E-value=6.4e-17  Score=138.88  Aligned_cols=107  Identities=21%  Similarity=0.449  Sum_probs=95.7

Q ss_pred             cccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770        126 LFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLP  205 (554)
Q Consensus       126 ~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~P  205 (554)
                      ++.+.+++.++|.+.+.  +.+++++|.||++||++|+.+.|.++++++.+.+ ++.++.|||+.++.++++++|.+ +|
T Consensus         2 ~~~v~~~~~~~~~~~v~--~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~-~P   77 (109)
T PRK09381          2 SDKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRG-IP   77 (109)
T ss_pred             CCcceeeChhhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChhHHHhCCCCc-CC
Confidence            45688899999998876  4577999999999999999999999999999987 59999999999999999999997 99


Q ss_pred             cceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        206 QIALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       206 ti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      |+++|++|+......|..+.+.|..++.+.+
T Consensus        78 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         78 TLLLFKNGEVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence            9999999998776666678899999998764

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=2.7e-17  Score=170.81  Aligned_cols=69  Identities=38%  Similarity=0.743  Sum_probs=66.1

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      .|||+||||+++||.+|||+|||+||++||||+++++.++++|++|++||++|+|+.+|+.||++|..+
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~   71 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA   71 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence            699999999999999999999999999999999987788999999999999999999999999999764

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.69  E-value=8.2e-16  Score=148.47  Aligned_cols=196  Identities=14%  Similarity=0.185  Sum_probs=134.2

Q ss_pred             cccccccccCCCCCCcEEEEEEc---ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceec
Q psy16770        134 HWNFEKNYIPKSYTTPHLILFYS---DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL  210 (554)
Q Consensus       134 ~~~F~~~v~~~~~~~~~lV~Fya---~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~  210 (554)
                      .+.|.+.+    .+...++.|++   +||++|+.+.|.++++++.+....+.++.+|.+++++++++|+|.+ +||+++|
T Consensus        10 ~~~~~~~~----~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~-~Pt~~~f   84 (215)
T TIGR02187        10 KELFLKEL----KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVER-VPTTIIL   84 (215)
T ss_pred             HHHHHHhc----CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCc-cCEEEEE
Confidence            44544544    34456777988   9999999999999999999864345677777779999999999997 9999999


Q ss_pred             cCCeEEE-EeCCcccHHHHHHHHHHhCCCC-ccccCCcccHHHHHhhhhcCCceEEEEEecCCchh---HHHHHHhh-cc
Q psy16770        211 TDGRTSF-FKEPSFSVQKMVEFFRLKLPYK-LIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVR---LRYLINAF-KH  284 (554)
Q Consensus       211 ~~g~~~~-y~~g~~~~~~i~~fl~~~~~~~-~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~---~~~~~~a~-~~  284 (554)
                      ++|+... .+.|..+.+.+.+|+...+.-. ....++.+..+.+-.   .++.+.++.|....-+.   .......+ ..
T Consensus        85 ~~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~---~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~  161 (215)
T TIGR02187        85 EEGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKTVELLQS---LDEPVRIEVFVTPTCPYCPYAVLMAHKFALA  161 (215)
T ss_pred             eCCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHh---cCCCcEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence            9998753 4434557788888888764211 123444444444332   23445555564432222   22222222 22


Q ss_pred             CCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        285 RTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       285 ~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      .+.+.+..++.+  .+++++++|+|.+ .||+++++++..      ..|..+.+.+.+|+..
T Consensus       162 ~~~i~~~~vD~~--~~~~~~~~~~V~~-vPtl~i~~~~~~------~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       162 NDKILGEMIEAN--ENPDLAEKYGVMS-VPKIVINKGVEE------FVGAYPEEQFLEYILS  214 (215)
T ss_pred             cCceEEEEEeCC--CCHHHHHHhCCcc-CCEEEEecCCEE------EECCCCHHHHHHHHHh
Confidence            467888888876  7899999999997 999999875321      4566677788888764

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.69  E-value=8e-17  Score=134.90  Aligned_cols=94  Identities=17%  Similarity=0.308  Sum_probs=83.0

Q ss_pred             cccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeE
Q psy16770        136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRT  215 (554)
Q Consensus       136 ~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~  215 (554)
                      +|++.|.. +.+++++|.||++||++|+++.|.++++++.+.+ .+.+++|||++++.+|++++|.+ +||+++|.+|+.
T Consensus         2 ~f~~~i~~-~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~-~Pt~~~~~~g~~   78 (96)
T cd02956           2 NFQQVLQE-STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQA-LPTVYLFAAGQP   78 (96)
T ss_pred             ChHHHHHh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCC-CCEEEEEeCCEE
Confidence            56777753 3467999999999999999999999999999976 49999999999999999999997 999999999988


Q ss_pred             EEEeCCcccHHHHHHHH
Q psy16770        216 SFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       216 ~~y~~g~~~~~~i~~fl  232 (554)
                      .....|..+.+.|..|+
T Consensus        79 ~~~~~g~~~~~~l~~~l   95 (96)
T cd02956          79 VDGFQGAQPEEQLRQML   95 (96)
T ss_pred             eeeecCCCCHHHHHHHh
Confidence            76666667889998886

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.68  E-value=1e-16  Score=135.91  Aligned_cols=99  Identities=25%  Similarity=0.412  Sum_probs=87.3

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      +.++|.++|++.+.  +.+++++|.||++||++|+++.|.|.++++.+.+ .+.++.+||+++..+|++++|++ +||++
T Consensus         2 v~~l~~~~~~~~i~--~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~-~P~~~   77 (103)
T cd03001           2 VVELTDSNFDKKVL--NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRG-FPTIK   77 (103)
T ss_pred             eEEcCHHhHHHHHh--cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCc-cCEEE
Confidence            56789999999886  3456799999999999999999999999999876 49999999999999999999997 99999


Q ss_pred             eccCC--eEEEEeCCcccHHHHHHHH
Q psy16770        209 LLTDG--RTSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       209 ~~~~g--~~~~y~~g~~~~~~i~~fl  232 (554)
                      +|.+|  ....|.|+ ++.++|++|+
T Consensus        78 ~~~~~~~~~~~~~g~-~~~~~l~~~~  102 (103)
T cd03001          78 VFGAGKNSPQDYQGG-RTAKAIVSAA  102 (103)
T ss_pred             EECCCCcceeecCCC-CCHHHHHHHh
Confidence            99888  44666666 5889999997

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PHA02278 thioredoxin-like protein

Probab=99.67  E-value=1.1e-16  Score=135.32  Aligned_cols=94  Identities=12%  Similarity=0.178  Sum_probs=81.1

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc----HHHHHHhCCcCCCCcce
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE----QGLARRLGVGSQLPQIA  208 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~----~~l~~~~~v~~~~Pti~  208 (554)
                      +.++|.+.+   +++++++|.||||||++|+.+.|.++++++.+.. .+.+.+||++.+    +.++++++|.+ +||++
T Consensus         3 ~~~~~~~~i---~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~~~~~I~~-iPT~i   77 (103)
T PHA02278          3 SLVDLNTAI---RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAVKLFDIMS-TPVLI   77 (103)
T ss_pred             CHHHHHHHH---hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHHHHCCCcc-ccEEE
Confidence            356788877   4788999999999999999999999999988654 378999999986    68999999997 99999


Q ss_pred             eccCCeEEEEeCCcccHHHHHHH
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEF  231 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~f  231 (554)
                      +|++|+.+....|..+.+.|.++
T Consensus        78 ~fk~G~~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         78 GYKDGQLVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             EEECCEEEEEEeCCCCHHHHHhh
Confidence            99999998887776677777664

>KOG0624|consensus

Probab=99.67  E-value=1e-16  Score=156.10  Aligned_cols=68  Identities=44%  Similarity=0.740  Sum_probs=63.7

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----hHHHHHHHHHHHHHHcCChHHHHhhhc
Q psy16770         15 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP----TAQEKFLQLTEAYNILSDAERRKQYDL   82 (554)
Q Consensus        15 ~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~----~~~~~~~~i~~Ay~~L~~~~~r~~yd~   82 (554)
                      .+..+|||+||||.++|+..||-||||+||.+||||-..++    .|+.+|+-|..|-++|+||++|+.||.
T Consensus       390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn  461 (504)
T KOG0624|consen  390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN  461 (504)
T ss_pred             HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC
Confidence            46789999999999999999999999999999999998763    488999999999999999999999998

>KOG0716|consensus

Probab=99.67  E-value=4.8e-17  Score=154.09  Aligned_cols=70  Identities=47%  Similarity=0.904  Sum_probs=66.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-PTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~-~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|.|.|||++++|+.++||||||+|+++||||++++ |++.++|++||+||+||+||.+|..||.+|..+
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~  100 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELG  100 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHH
Confidence            4678999999999999999999999999999999986 889999999999999999999999999998764

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.66  E-value=2.3e-16  Score=133.75  Aligned_cols=97  Identities=18%  Similarity=0.261  Sum_probs=85.7

Q ss_pred             cccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceecc
Q psy16770        132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLT  211 (554)
Q Consensus       132 Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~  211 (554)
                      -|.++|+..+   +++++++|.|||+||++|+.+.|.++++++.+++..+.|+.||++ +.+++++|+|++ +||+++|+
T Consensus         5 ~~~~~~~~~i---~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~-~Pt~~~~~   79 (102)
T cd02948           5 NNQEEWEELL---SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKC-EPTFLFYK   79 (102)
T ss_pred             cCHHHHHHHH---ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCc-CcEEEEEE
Confidence            3677888877   467899999999999999999999999999997545899999999 889999999997 99999999


Q ss_pred             CCeEEEEeCCcccHHHHHHHHHH
Q psy16770        212 DGRTSFFKEPSFSVQKMVEFFRL  234 (554)
Q Consensus       212 ~g~~~~y~~g~~~~~~i~~fl~~  234 (554)
                      +|+.+....|. +.+.|.+++.+
T Consensus        80 ~g~~~~~~~G~-~~~~~~~~i~~  101 (102)
T cd02948          80 NGELVAVIRGA-NAPLLNKTITE  101 (102)
T ss_pred             CCEEEEEEecC-ChHHHHHHHhh
Confidence            99998888775 77888888764

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.66  E-value=1.6e-16  Score=133.97  Aligned_cols=92  Identities=17%  Similarity=0.334  Sum_probs=77.8

Q ss_pred             cccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-CcHHHHHHhCCcCCCCcceeccCCe
Q psy16770        136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-NEQGLARRLGVGSQLPQIALLTDGR  214 (554)
Q Consensus       136 ~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-~~~~l~~~~~v~~~~Pti~~~~~g~  214 (554)
                      ++.+.+.. ..+++++|.|||+||++|+.+.|.|+++++.+.+  +.+++||++ .++.++++|+|.+ +||+++|++|.
T Consensus         8 ~~~~~~~~-~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~~~~~l~~~~~V~~-~PT~~lf~~g~   83 (100)
T cd02999           8 IALDLMAF-NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESSIKPSLLSRYGVVG-FPTILLFNSTP   83 (100)
T ss_pred             HHHHHHHh-cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCCCCHHHHHhcCCee-cCEEEEEcCCc
Confidence            34444432 4688999999999999999999999999999864  789999999 8999999999997 99999999995


Q ss_pred             EEEEeCCcccHHHHHHHH
Q psy16770        215 TSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       215 ~~~y~~g~~~~~~i~~fl  232 (554)
                      ...+. |.++.++|.+|+
T Consensus        84 ~~~~~-G~~~~~~l~~f~  100 (100)
T cd02999          84 RVRYN-GTRTLDSLAAFY  100 (100)
T ss_pred             eeEec-CCCCHHHHHhhC
Confidence            55555 557889999885

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>KOG0721|consensus

Probab=99.66  E-value=2.6e-16  Score=144.19  Aligned_cols=85  Identities=34%  Similarity=0.647  Sum_probs=72.9

Q ss_pred             HHHHHHHHHhhcc----CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHcCChHHH
Q psy16770          3 WYTFLLNVLFINC----AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-PTAQEKFLQLTEAYNILSDAERR   77 (554)
Q Consensus         3 ~~~~~~~~~~~~~----~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~-~~~~~~~~~i~~Ay~~L~~~~~r   77 (554)
                      |+++..++..+..    ....||||||||+|++|.+|||+|||+|++++||||+++ .+.++.|..|++||+.|+|+..|
T Consensus        79 W~v~~fL~y~i~~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sr  158 (230)
T KOG0721|consen   79 WAVIAFLIYKIMNSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSR  158 (230)
T ss_pred             HHHHHHHHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhH
Confidence            5555555555543    456899999999999999999999999999999999987 45677889999999999999999


Q ss_pred             HhhhccCCCC
Q psy16770         78 KQYDLFGTTD   87 (554)
Q Consensus        78 ~~yd~~~~~~   87 (554)
                      ..|..+|..+
T Consensus       159 eN~ekYG~PD  168 (230)
T KOG0721|consen  159 ENWEKYGNPD  168 (230)
T ss_pred             HHHHHhCCCC
Confidence            9999999743

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=1.1e-16  Score=166.94  Aligned_cols=70  Identities=47%  Similarity=0.882  Sum_probs=65.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhc----cCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDL----FGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~----~~~~~   87 (554)
                      ..|||+||||+++||.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||+    +|..+
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g   82 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGG   82 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccc
Confidence            479999999999999999999999999999999997 45789999999999999999999999998    88654

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=1.2e-16  Score=167.05  Aligned_cols=69  Identities=48%  Similarity=0.895  Sum_probs=65.2

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      .|||+||||+++||.+|||+|||+||++||||+++ ++.|+++|++|++||++|+|+.+|+.||++|..+
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   70 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG   70 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence            48999999999999999999999999999999997 4678999999999999999999999999999764

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.65  E-value=2.2e-16  Score=134.03  Aligned_cols=99  Identities=18%  Similarity=0.413  Sum_probs=85.1

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC-CCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-LGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~-~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +.+||.++|++.+.  +.+++++|.||++||++|+.+.|.|+++++.+++ ..+.+++|||+.+ +++..+++.+ +||+
T Consensus         2 v~~l~~~~f~~~i~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~-~Pt~   77 (104)
T cd02995           2 VKVVVGKNFDEVVL--DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDG-FPTI   77 (104)
T ss_pred             eEEEchhhhHHHHh--CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCC-CCEE
Confidence            56889999999886  3457999999999999999999999999999986 3599999999987 6889999997 9999


Q ss_pred             eeccCCe---EEEEeCCcccHHHHHHHH
Q psy16770        208 ALLTDGR---TSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       208 ~~~~~g~---~~~y~~g~~~~~~i~~fl  232 (554)
                      ++|.+|+   ...|. |.++.++|++||
T Consensus        78 ~~~~~~~~~~~~~~~-g~~~~~~l~~fi  104 (104)
T cd02995          78 LFFPAGDKSNPIKYE-GDRTLEDLIKFI  104 (104)
T ss_pred             EEEcCCCcCCceEcc-CCcCHHHHHhhC
Confidence            9998886   34455 456889999885

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>KOG0715|consensus

Probab=99.65  E-value=1.3e-16  Score=158.84  Aligned_cols=70  Identities=44%  Similarity=0.839  Sum_probs=67.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||+||||+++|+.+|||+||++|||++|||.|.+++|.++|++|.+|||+|+|+++|+.||.+|..+
T Consensus        42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            3499999999999999999999999999999999999999999999999999999999999999998764

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.65  E-value=4.6e-16  Score=131.45  Aligned_cols=100  Identities=28%  Similarity=0.509  Sum_probs=87.4

Q ss_pred             cccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC-CEEEEEEEecCcHHHHHHhCCcCCCCcceec
Q psy16770        132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL-GVGFFTVHVHNEQGLARRLGVGSQLPQIALL  210 (554)
Q Consensus       132 Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~-~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~  210 (554)
                      ||.++|++.+.   .+++++|.||++||++|+++.|.|+++++.+++. ++.++.+||++++.+|++|+|.+ +|++.+|
T Consensus         1 l~~~~~~~~~~---~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~-~P~~~~~   76 (102)
T TIGR01126         1 LTASNFDDIVL---SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSG-FPTIKFF   76 (102)
T ss_pred             CchhhHHHHhc---cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCc-CCEEEEe
Confidence            56788998884   6789999999999999999999999999999864 39999999999999999999997 9999999


Q ss_pred             cCCe-EEEEeCCcccHHHHHHHHHHhC
Q psy16770        211 TDGR-TSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       211 ~~g~-~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      .+|+ ...|.| ..+.+.|..|+.+++
T Consensus        77 ~~~~~~~~~~g-~~~~~~l~~~i~~~~  102 (102)
T TIGR01126        77 PKGKKPVDYEG-GRDLEAIVEFVNEKS  102 (102)
T ss_pred             cCCCcceeecC-CCCHHHHHHHHHhcC
Confidence            8777 555655 468899999998753

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.65  E-value=3.2e-16  Score=133.00  Aligned_cols=100  Identities=22%  Similarity=0.375  Sum_probs=86.8

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC-CCEEEEEEEecC--cHHHHHHhCCcCCCC
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-LGVGFFTVHVHN--EQGLARRLGVGSQLP  205 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~-~~v~~~~Vd~~~--~~~l~~~~~v~~~~P  205 (554)
                      +.+|+..+|+..+.   .+++++|.||++||++|+++.|.+.++++.+.. ..+.++.+||+.  +..+|++++|++ +|
T Consensus         2 ~~~l~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~-~P   77 (104)
T cd02997           2 VVHLTDEDFRKFLK---KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKG-FP   77 (104)
T ss_pred             eEEechHhHHHHHh---hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcc-cc
Confidence            56788899998883   556999999999999999999999999999872 258999999999  999999999997 99


Q ss_pred             cceeccCCeEEEEeCCcccHHHHHHHH
Q psy16770        206 QIALLTDGRTSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       206 ti~~~~~g~~~~y~~g~~~~~~i~~fl  232 (554)
                      |+++|++|+....+.|..+.+.+++|+
T Consensus        78 t~~~~~~g~~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          78 TFKYFENGKFVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence            999999998665555666889998875

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.64  E-value=2e-16  Score=134.75  Aligned_cols=87  Identities=13%  Similarity=0.321  Sum_probs=75.3

Q ss_pred             ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCe
Q psy16770        135 WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR  214 (554)
Q Consensus       135 ~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~  214 (554)
                      ++|++.+.. +.+++++|.|||+||++|+.+.|.++++++++.+. +.|++||++++++++++|+|.+ +||+++|++|+
T Consensus         3 ~~~~~~i~~-~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~~la~~~~V~~-iPTf~~fk~G~   79 (114)
T cd02954           3 WAVDQAILS-EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVPDFNKMYELYD-PPTVMFFFRNK   79 (114)
T ss_pred             HHHHHHHhc-cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCHHHHHHcCCCC-CCEEEEEECCE
Confidence            456666642 25779999999999999999999999999999764 8999999999999999999997 99999999999


Q ss_pred             EEEEeCCccc
Q psy16770        215 TSFFKEPSFS  224 (554)
Q Consensus       215 ~~~y~~g~~~  224 (554)
                      .+...-|..+
T Consensus        80 ~v~~~~G~~~   89 (114)
T cd02954          80 HMKIDLGTGN   89 (114)
T ss_pred             EEEEEcCCCC
Confidence            8777655433

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=1.7e-16  Score=166.07  Aligned_cols=69  Identities=46%  Similarity=0.876  Sum_probs=65.4

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-PTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~-~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      .|||+||||+++|+.+|||+|||+||++||||++++ +.|+++|++|++||++|+||.+|+.||.+|..+
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~   72 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG   72 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence            699999999999999999999999999999999974 678899999999999999999999999999865

>PLN02309 5'-adenylylsulfate reductase

Probab=99.64  E-value=2.8e-16  Score=165.05  Aligned_cols=108  Identities=19%  Similarity=0.410  Sum_probs=96.2

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-CcHHHHH-HhCCcCCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-NEQGLAR-RLGVGSQL  204 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-~~~~l~~-~~~v~~~~  204 (554)
                      ..+++||.++|++.+...+.+++++|+||||||++|+.+.|.|+++++.+.+.++.|++|||+ .+..+|. +++|.+ |
T Consensus       345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~-~  423 (457)
T PLN02309        345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS-F  423 (457)
T ss_pred             CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce-e
Confidence            468889999999988655678999999999999999999999999999998767999999999 8889997 699997 9


Q ss_pred             CcceeccCCe--EEEEeCCcccHHHHHHHHHHh
Q psy16770        205 PQIALLTDGR--TSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       205 Pti~~~~~g~--~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      ||+++|++|.  ++.|.++.++.++|+.|+...
T Consensus       424 PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        424 PTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             eEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            9999997664  577887778999999999764

>KOG0691|consensus

Probab=99.64  E-value=1.8e-16  Score=155.97  Aligned_cols=70  Identities=44%  Similarity=0.780  Sum_probs=67.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||.+|||++.++.++|++|||+.+++||||||| +|.|.++|+.|.+||++|+|+..|.+||..|..+
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~   74 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG   74 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence            689999999999999999999999999999999998 6889999999999999999999999999999875

>PRK10996 thioredoxin 2; Provisional

Probab=99.64  E-value=6.9e-16  Score=138.31  Aligned_cols=104  Identities=23%  Similarity=0.428  Sum_probs=93.6

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .++.++.++|+..+   +.+++++|.||++||++|+.+.|.++++++.+.+ ++.+++||+++++.++++++|.+ +||+
T Consensus        36 ~~i~~~~~~~~~~i---~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~-~Ptl  110 (139)
T PRK10996         36 EVINATGETLDKLL---QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRS-IPTI  110 (139)
T ss_pred             CCEEcCHHHHHHHH---hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCc-cCEE
Confidence            36678899999877   4578999999999999999999999999999887 59999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++|++|+.+....|..+.+.|.+|+.+.+
T Consensus       111 ii~~~G~~v~~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996        111 MIFKNGQVVDMLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             EEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence            99999998887777778899999998753

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.64  E-value=2.9e-16  Score=164.90  Aligned_cols=107  Identities=21%  Similarity=0.387  Sum_probs=93.4

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-HHH-HHhCCcCCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-GLA-RRLGVGSQL  204 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-~l~-~~~~v~~~~  204 (554)
                      ..+++||.+||++.|..++.++++||.||||||++|+.+.|.|+++++++++.++.|++|||+.+. .++ ++|+|.+ +
T Consensus       351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~-~  429 (463)
T TIGR00424       351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS-F  429 (463)
T ss_pred             CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc-c
Confidence            478899999999998544678899999999999999999999999999998767999999999864 454 7899997 9


Q ss_pred             CcceeccCCe--EEEEeCCcccHHHHHHHHHH
Q psy16770        205 PQIALLTDGR--TSFFKEPSFSVQKMVEFFRL  234 (554)
Q Consensus       205 Pti~~~~~g~--~~~y~~g~~~~~~i~~fl~~  234 (554)
                      ||+++|++|.  ++.|.+|.++.++|+.|+.-
T Consensus       430 PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       430 PTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             ceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence            9999998875  46777777899999999964

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.64  E-value=2.7e-16  Score=171.67  Aligned_cols=72  Identities=32%  Similarity=0.539  Sum_probs=68.0

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        16 ~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ....++|++|||+++||..+||+|||+||++||||+++++.|.++|++|++||++||||.+|+.||.+|..+
T Consensus       570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G  641 (1136)
T PTZ00341        570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDG  641 (1136)
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence            356899999999999999999999999999999999987788899999999999999999999999999865

>KOG0717|consensus

Probab=99.63  E-value=1.6e-16  Score=160.04  Aligned_cols=73  Identities=41%  Similarity=0.635  Sum_probs=67.0

Q ss_pred             ccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770         14 NCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND--PTAQEKFLQLTEAYNILSDAERRKQYDLFGTT   86 (554)
Q Consensus        14 ~~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~--~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~   86 (554)
                      .+...+++|++|||.+.|+..+||++||+||++|||||||+  ..|.++|+.|+.||+|||||..|.=||.+...
T Consensus         3 ~~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreq   77 (508)
T KOG0717|consen    3 NPFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQ   77 (508)
T ss_pred             CchhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHH
Confidence            35567899999999999999999999999999999999986  46889999999999999999999999987663

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=3.4e-16  Score=163.02  Aligned_cols=69  Identities=54%  Similarity=0.919  Sum_probs=66.3

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      .|||++|||+++||.++||+|||+|+++||||+++++.++++|++|++||++|+||.+|+.||++|..+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~   70 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP   70 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence            599999999999999999999999999999999988889999999999999999999999999999764

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.62  E-value=1.2e-15  Score=129.80  Aligned_cols=95  Identities=24%  Similarity=0.414  Sum_probs=81.7

Q ss_pred             ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770        135 WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD  212 (554)
Q Consensus       135 ~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~  212 (554)
                      ++|++..    .+++++|.||++||++|+++.|.|+++++.+++.  ++.++.+||+.++.+|++++|.+ +||+++|.+
T Consensus         7 ~~~~~~~----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~-~Pt~~l~~~   81 (104)
T cd03000           7 DSFKDVR----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRG-YPTIKLLKG   81 (104)
T ss_pred             hhhhhhc----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCcc-ccEEEEEcC
Confidence            6777632    4679999999999999999999999999998632  49999999999999999999997 999999988


Q ss_pred             CeEEEEeCCcccHHHHHHHHHHh
Q psy16770        213 GRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       213 g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      |....+.|. ++.+.|.+|+++.
T Consensus        82 ~~~~~~~G~-~~~~~l~~~~~~~  103 (104)
T cd03000          82 DLAYNYRGP-RTKDDIVEFANRV  103 (104)
T ss_pred             CCceeecCC-CCHHHHHHHHHhh
Confidence            866666654 6889999999864

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=4.5e-16  Score=161.97  Aligned_cols=69  Identities=43%  Similarity=0.850  Sum_probs=66.4

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      .|||+||||+++||.+|||+|||+|+++||||+++++.++++|++|++||++|+||.+|+.||.+|..+
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g   71 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAG   71 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccc
Confidence            699999999999999999999999999999999988889999999999999999999999999999764

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.62  E-value=4.6e-16  Score=157.68  Aligned_cols=68  Identities=37%  Similarity=0.714  Sum_probs=65.2

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770         19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTT   86 (554)
Q Consensus        19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~   86 (554)
                      .|||++|||++.||.+|||+|||+||++||||+++++.++++|++|++||++|+||.+|+.||.+|..
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~   71 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQH   71 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence            69999999999999999999999999999999998888999999999999999999999999998753

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=6e-16  Score=160.56  Aligned_cols=69  Identities=46%  Similarity=0.835  Sum_probs=65.1

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP--TAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~--~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      .|||+||||+++||.+|||+|||+||++||||++++.  .|+++|++|++||++|+|+.+|+.||.+|..+
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~   73 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVD   73 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcc
Confidence            6999999999999999999999999999999999743  68899999999999999999999999999864

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.61  E-value=1.5e-15  Score=129.03  Aligned_cols=96  Identities=15%  Similarity=0.164  Sum_probs=81.0

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH---HHHHHhCCcCCCCccee
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ---GLARRLGVGSQLPQIAL  209 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~---~l~~~~~v~~~~Pti~~  209 (554)
                      |.++|++.|.. ..+++++|.|||+||++|+.+.|.++++++++.  ++.|++||++++.   .++++++|++ +||+++
T Consensus         2 ~~~~~~~~i~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~d~~~~~~~l~~~~~V~~-~Pt~~~   77 (103)
T cd02985           2 SVEELDEALKK-AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN--DVVFLLVNGDENDSTMELCRREKIIE-VPHFLF   77 (103)
T ss_pred             CHHHHHHHHHH-cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CCEEEEEECCCChHHHHHHHHcCCCc-CCEEEE
Confidence            35677777742 247899999999999999999999999999993  5899999999874   8999999997 999999


Q ss_pred             ccCCeEEEEeCCcccHHHHHHHHH
Q psy16770        210 LTDGRTSFFKEPSFSVQKMVEFFR  233 (554)
Q Consensus       210 ~~~g~~~~y~~g~~~~~~i~~fl~  233 (554)
                      |++|+.+....|. ..+.|.+-+.
T Consensus        78 ~~~G~~v~~~~G~-~~~~l~~~~~  100 (103)
T cd02985          78 YKDGEKIHEEEGI-GPDELIGDVL  100 (103)
T ss_pred             EeCCeEEEEEeCC-CHHHHHHHHH
Confidence            9999987777675 5677776654

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>KOG0718|consensus

Probab=99.61  E-value=5e-16  Score=156.38  Aligned_cols=71  Identities=41%  Similarity=0.778  Sum_probs=66.2

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----hHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP----TAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~----~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      .+.|+|.+|||+++||.+|||+||||+++.+||||..+|    .|++.|+.|.+|||+||||.+|..||.+|..+
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qG   81 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQG   81 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcc
Confidence            356999999999999999999999999999999998753    48899999999999999999999999999987

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.61  E-value=1.5e-15  Score=129.05  Aligned_cols=100  Identities=23%  Similarity=0.455  Sum_probs=84.9

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC-CCEEEEEEEecC-cHHHHHHhCCcCCCCc
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-LGVGFFTVHVHN-EQGLARRLGVGSQLPQ  206 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~-~~v~~~~Vd~~~-~~~l~~~~~v~~~~Pt  206 (554)
                      +.+|+.++|+..+.  +.+++++|+||++||++|+++.|.|+++++.++. .++.++.+||.. ++.+|++++|.+ +|+
T Consensus         2 ~~~l~~~~~~~~~~--~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~-~P~   78 (105)
T cd02998           2 VVELTDSNFDKVVG--DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSG-FPT   78 (105)
T ss_pred             eEEcchhcHHHHhc--CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCC-cCE
Confidence            46788999999774  3456999999999999999999999999999873 259999999999 999999999997 999


Q ss_pred             ceeccCC-eE-EEEeCCcccHHHHHHHH
Q psy16770        207 IALLTDG-RT-SFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       207 i~~~~~g-~~-~~y~~g~~~~~~i~~fl  232 (554)
                      +++|.+| +. ..|. |.++.+.|.+|+
T Consensus        79 ~~~~~~~~~~~~~~~-g~~~~~~l~~~i  105 (105)
T cd02998          79 LKFFPKGSTEPVKYE-GGRDLEDLVKFV  105 (105)
T ss_pred             EEEEeCCCCCccccC-CccCHHHHHhhC
Confidence            9999766 33 4444 446889998885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=8.3e-16  Score=160.82  Aligned_cols=70  Identities=47%  Similarity=0.869  Sum_probs=66.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||++|||+++|+.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||.+|..+
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~   74 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG   74 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence            579999999999999999999999999999999997 4578999999999999999999999999999764

>KOG0719|consensus

Probab=99.60  E-value=1e-15  Score=141.36  Aligned_cols=73  Identities=51%  Similarity=0.746  Sum_probs=66.4

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         15 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND---PTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        15 ~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~---~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      +....|||+||||.++|+..+||+|||+|+++||||+++.   ..+.++|+.++.||+||+|.++|+.||..|..+
T Consensus        10 ~f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   10 SFNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             cccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            3446799999999999999999999999999999999952   458899999999999999999999999988765

>TIGR01068 thioredoxin thioredoxin

Probab=99.60  E-value=3.3e-15  Score=125.75  Aligned_cols=101  Identities=24%  Similarity=0.493  Sum_probs=88.0

Q ss_pred             cccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceecc
Q psy16770        132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLT  211 (554)
Q Consensus       132 Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~  211 (554)
                      +|.++|...+.  +.+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||++.+..++++++|.+ +||+++|.
T Consensus         1 i~~~~~~~~~~--~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~-~P~~~~~~   76 (101)
T TIGR01068         1 LTDANFDETIA--SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRS-IPTLLLFK   76 (101)
T ss_pred             CCHHHHHHHHh--hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCc-CCEEEEEe
Confidence            35667777774  3467999999999999999999999999998875 49999999999999999999997 99999999


Q ss_pred             CCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        212 DGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       212 ~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +|+......|..+.+.+.+|+.+.+
T Consensus        77 ~g~~~~~~~g~~~~~~l~~~l~~~~  101 (101)
T TIGR01068        77 NGKEVDRSVGALPKAALKQLINKNL  101 (101)
T ss_pred             CCcEeeeecCCCCHHHHHHHHHhhC
Confidence            9988776667678899999998753

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.59  E-value=1.6e-15  Score=115.40  Aligned_cols=57  Identities=56%  Similarity=0.948  Sum_probs=54.0

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChhHHHHHHHHHHHHHHcCChH
Q psy16770         19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN--DPTAQEKFLQLTEAYNILSDAE   75 (554)
Q Consensus        19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~--~~~~~~~~~~i~~Ay~~L~~~~   75 (554)
                      .|||++|||+++++.++||+||+++++++|||+++  .+.+.++|.+|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            48999999999999999999999999999999998  5778999999999999999985

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.59  E-value=4.6e-15  Score=125.47  Aligned_cols=96  Identities=19%  Similarity=0.149  Sum_probs=85.5

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEccc--ccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDW--CFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~w--C~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      .-.+|..||++.+   ..+.+.+|.||++|  |++|..+.|.++++++++.+. +.+++||+++++.++.+|+|++ +||
T Consensus        12 ~~~~~~~~~~~~~---~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~~~~la~~f~V~s-IPT   86 (111)
T cd02965          12 WPRVDAATLDDWL---AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRADEQALAARFGVLR-TPA   86 (111)
T ss_pred             CcccccccHHHHH---hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCCCHHHHHHcCCCc-CCE
Confidence            3468899999877   57789999999997  999999999999999999874 8999999999999999999998 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHH
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMV  229 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~  229 (554)
                      +++|++|+.+....|..+.+.+.
T Consensus        87 li~fkdGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          87 LLFFRDGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             EEEEECCEEEEEEeCccCHHHHh
Confidence            99999999987776766766653

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>KOG1731|consensus

Probab=99.59  E-value=2e-15  Score=156.61  Aligned_cols=222  Identities=16%  Similarity=0.208  Sum_probs=141.0

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCC--EEEEEEEecC--cHHHHHHhCCcC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHN--EQGLARRLGVGS  202 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~--v~~~~Vd~~~--~~~l~~~~~v~~  202 (554)
                      +.+++|+..+|...|..  +.+.++|+||++|||||++++|.|+++|+.+.++.  +.++.|||..  |..+|++++|++
T Consensus        39 D~ii~Ld~~tf~~~v~~--~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~  116 (606)
T KOG1731|consen   39 DPIIELDVDTFNAAVFG--SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG  116 (606)
T ss_pred             CCeEEeehhhhHHHhcc--cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence            67999999999999984  44789999999999999999999999999998653  8999999986  778999999998


Q ss_pred             CCCcceeccCCeEE----EEeCCcccHHHHHHHHHHhC---------C--CCccccCCc-ccHHHHHhhhhcCCceEEEE
Q psy16770        203 QLPQIALLTDGRTS----FFKEPSFSVQKMVEFFRLKL---------P--YKLIVPLSA-TNVDAFLDNWREDNKVHALL  266 (554)
Q Consensus       203 ~~Pti~~~~~g~~~----~y~~g~~~~~~i~~fl~~~~---------~--~~~v~~~t~-~~~~~fl~~~~~~~~~~v~~  266 (554)
                       |||+++|..+...    ....+.....++.+.+.+.+         |  |. ...+++ ..+.+..++-......++++
T Consensus       117 -~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~-f~pl~~~~~~~~l~~~~~~~~~yvAiv  194 (606)
T KOG1731|consen  117 -YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPN-FDPLKDTTTLEELDEGISTTANYVAIV  194 (606)
T ss_pred             -CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCC-CCCCCCcchHHHHhcccccccceeEEE
Confidence             9999999544211    11112223455655555432         1  11 112222 22322222211223466777


Q ss_pred             EecCCchhHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCcee-ecCCCChhHHHhHHh
Q psy16770        267 FQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASI-TMNSIPVPTLQDITD  345 (554)
Q Consensus       267 f~~~~~~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i-~~~~~~~~~l~~fi~  345 (554)
                      |......-.+..++...-.+.+.+..+.+.  ....+.+ +++.. +|..++|+++..++.... +..+.....|.++|.
T Consensus       195 ~e~~~s~lg~~~~l~~l~~~~v~vr~~~d~--q~~~~~~-l~~~~-~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg  270 (606)
T KOG1731|consen  195 FETEPSDLGWANLLNDLPSKQVGVRARLDT--QNFPLFG-LKPDN-FPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLG  270 (606)
T ss_pred             EecCCcccHHHHHHhhccCCCcceEEEecc--hhccccc-cCCCC-chhhhhhcCCcccccccccccHHHHHHHHHHHhc
Confidence            766565555555554433456666666544  2333444 66665 899999998777653211 122233356777775


Q ss_pred             cC---CCccccccc
Q psy16770        346 NN---PYLTLPRIS  356 (554)
Q Consensus       346 ~~---~~~~v~~lt  356 (554)
                      ..   ..|+++-.+
T Consensus       271 ~~~~a~~pt~~p~~  284 (606)
T KOG1731|consen  271 DKNEASGPTLHPIT  284 (606)
T ss_pred             CccccCCCCcCccc
Confidence            54   334444444

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.59  E-value=2.7e-15  Score=129.77  Aligned_cols=100  Identities=22%  Similarity=0.385  Sum_probs=82.5

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecC--cHHHHHHhCCcCC
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHN--EQGLARRLGVGSQ  203 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~--~~~l~~~~~v~~~  203 (554)
                      .+++|+.++|++.|.  +.+++++|.||++||++|+.+.|.|+++++.+++.  .+.++.|||+.  +..+|++++|++ 
T Consensus         2 ~v~~l~~~~f~~~i~--~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~-   78 (114)
T cd02992           2 PVIVLDAASFNSALL--GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG-   78 (114)
T ss_pred             CeEECCHHhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC-
Confidence            478899999999986  44579999999999999999999999999988642  38999999864  678999999997 


Q ss_pred             CCcceeccCCeE-----EEEeCCcccHHHHHH
Q psy16770        204 LPQIALLTDGRT-----SFFKEPSFSVQKMVE  230 (554)
Q Consensus       204 ~Pti~~~~~g~~-----~~y~~g~~~~~~i~~  230 (554)
                      +||+++|++|..     ..+.|+.+..+.+..
T Consensus        79 ~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~  110 (114)
T cd02992          79 YPTLRYFPPFSKEATDGLKQEGPERDVNELRE  110 (114)
T ss_pred             CCEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence            999999988864     355666555555533

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.58  E-value=2.2e-15  Score=136.03  Aligned_cols=92  Identities=20%  Similarity=0.346  Sum_probs=81.0

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCC----
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQ----  203 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~----  203 (554)
                      .+.+++.++|++.+.. +.+++++|+||||||++|+.+.|.++++++++++.++.|++|||++++++|++++|. .    
T Consensus        29 ~v~~l~~~~f~~~l~~-~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~-~~~~v  106 (152)
T cd02962          29 HIKYFTPKTLEEELER-DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVS-TSPLS  106 (152)
T ss_pred             ccEEcCHHHHHHHHHh-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCce-ecCCc
Confidence            5778899999987742 345799999999999999999999999999997656999999999999999999997 4    


Q ss_pred             --CCcceeccCCeEEEEeCC
Q psy16770        204 --LPQIALLTDGRTSFFKEP  221 (554)
Q Consensus       204 --~Pti~~~~~g~~~~y~~g  221 (554)
                        +||+++|++|+.+....|
T Consensus       107 ~~~PT~ilf~~Gk~v~r~~G  126 (152)
T cd02962         107 KQLPTIILFQGGKEVARRPY  126 (152)
T ss_pred             CCCCEEEEEECCEEEEEEec
Confidence              999999999998766654

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.58  E-value=3e-15  Score=111.69  Aligned_cols=54  Identities=56%  Similarity=0.976  Sum_probs=51.7

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHcCC
Q psy16770         20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-PTAQEKFLQLTEAYNILSD   73 (554)
Q Consensus        20 d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~-~~~~~~~~~i~~Ay~~L~~   73 (554)
                      |||++|||+++++.++||++||+|+++||||+++. +.+.++|.+|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            79999999999999999999999999999999976 6789999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.57  E-value=2.6e-15  Score=129.82  Aligned_cols=90  Identities=14%  Similarity=0.171  Sum_probs=79.5

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+.++|.++|.+.|...+.+++++|.||+|||++|+.+.|.++++++.+.  ++.|++||++++ .++++++|++ +||+
T Consensus         5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~-~l~~~~~i~~-~Pt~   80 (113)
T cd02957           5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA-FLVNYLDIKV-LPTL   80 (113)
T ss_pred             eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh-HHHHhcCCCc-CCEE
Confidence            36778899999998644335899999999999999999999999999986  489999999999 9999999997 9999


Q ss_pred             eeccCCeEEEEeCC
Q psy16770        208 ALLTDGRTSFFKEP  221 (554)
Q Consensus       208 ~~~~~g~~~~y~~g  221 (554)
                      ++|++|+.+....|
T Consensus        81 ~~f~~G~~v~~~~G   94 (113)
T cd02957          81 LVYKNGELIDNIVG   94 (113)
T ss_pred             EEEECCEEEEEEec
Confidence            99999998766645

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.57  E-value=3.4e-15  Score=125.20  Aligned_cols=98  Identities=27%  Similarity=0.474  Sum_probs=83.2

Q ss_pred             cccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhC-CCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        130 LSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS-PLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       130 ~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~-~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      ++||.++|.+.+.   .+++++|.||++||++|+.+.|.|+++++.++ ..++.++.|||+++..+|++++|++ +||++
T Consensus         1 ~~l~~~~~~~~i~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~-~Pt~~   76 (101)
T cd02961           1 VELTDDNFDELVK---DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRG-YPTIK   76 (101)
T ss_pred             CcccHHHHHHHHh---CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCC-CCEEE
Confidence            3578889999884   44599999999999999999999999999994 3369999999999999999999997 99999


Q ss_pred             eccCC-eE-EEEeCCcccHHHHHHHH
Q psy16770        209 LLTDG-RT-SFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       209 ~~~~g-~~-~~y~~g~~~~~~i~~fl  232 (554)
                      +|.+| .. ..|. |..+.++|.+|+
T Consensus        77 ~~~~~~~~~~~~~-g~~~~~~i~~~~  101 (101)
T cd02961          77 LFPNGSKEPVKYE-GPRTLESLVEFI  101 (101)
T ss_pred             EEcCCCcccccCC-CCcCHHHHHhhC
Confidence            99877 44 4455 445888888874

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>KOG0190|consensus

Probab=99.55  E-value=3e-15  Score=156.15  Aligned_cols=105  Identities=17%  Similarity=0.364  Sum_probs=89.7

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC-CEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL-GVGFFTVHVHNEQGLARRLGVGSQLP  205 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~-~v~~~~Vd~~~~~~l~~~~~v~~~~P  205 (554)
                      ..|..|..+||+..|.  +.++-+||+|||||||||++++|.|+++|+.+++. ++.++++|++.|.  .....+++ ||
T Consensus       366 ~pVkvvVgknfd~iv~--de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~-fP  440 (493)
T KOG0190|consen  366 SPVKVVVGKNFDDIVL--DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDG-FP  440 (493)
T ss_pred             CCeEEEeecCHHHHhh--ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--Cccccccc-cc
Confidence            4688899999999997  56788999999999999999999999999999965 6999999999986  34457887 99


Q ss_pred             cceeccCCe---EEEEeCCcccHHHHHHHHHHhCC
Q psy16770        206 QIALLTDGR---TSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       206 ti~~~~~g~---~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      ||++|+.|.   ++.|. |.|+.+++..|+.+.-.
T Consensus       441 TI~~~pag~k~~pv~y~-g~R~le~~~~fi~~~a~  474 (493)
T KOG0190|consen  441 TILFFPAGHKSNPVIYN-GDRTLEDLKKFIKKSAT  474 (493)
T ss_pred             eEEEecCCCCCCCcccC-CCcchHHHHhhhccCCC
Confidence            999997664   45565 55689999999987754

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.54  E-value=1.4e-14  Score=121.48  Aligned_cols=95  Identities=15%  Similarity=0.361  Sum_probs=81.6

Q ss_pred             cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCC
Q psy16770        134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG  213 (554)
Q Consensus       134 ~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g  213 (554)
                      .++|++.+.... +++++|.||++||++|+++.|.++++++.+.. .+.+++||+++++.++++|+|.+ +||+++|.+|
T Consensus         2 ~~~~~~~~~~~~-~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-~i~~~~vd~~~~~~~~~~~~i~~-~Pt~~~~~~g   78 (97)
T cd02984           2 EEEFEELLKSDA-SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAEELPEISEKFEITA-VPTFVFFRNG   78 (97)
T ss_pred             HHHHHHHHhhCC-CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-ceEEEEEccccCHHHHHhcCCcc-ccEEEEEECC
Confidence            456777775332 68999999999999999999999999999744 69999999999999999999997 9999999999


Q ss_pred             eEEEEeCCcccHHHHHHHH
Q psy16770        214 RTSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       214 ~~~~y~~g~~~~~~i~~fl  232 (554)
                      +.+....|. ..+.|.+.+
T Consensus        79 ~~~~~~~g~-~~~~l~~~~   96 (97)
T cd02984          79 TIVDRVSGA-DPKELAKKV   96 (97)
T ss_pred             EEEEEEeCC-CHHHHHHhh
Confidence            988887775 567777654

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>KOG0191|consensus

Probab=99.53  E-value=2.2e-14  Score=150.62  Aligned_cols=181  Identities=19%  Similarity=0.275  Sum_probs=133.7

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhC-CCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS-PLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~-~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      .+..++..+|...+.  ..+..|+|.||+|||+||+.++|+|+++++.++ +.++.++.+||+.+..+|++++|++ |||
T Consensus       145 ~v~~l~~~~~~~~~~--~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~-~Pt  221 (383)
T KOG0191|consen  145 EVFELTKDNFDETVK--DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRG-YPT  221 (383)
T ss_pred             ceEEccccchhhhhh--ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccC-Cce
Confidence            388899999998886  567899999999999999999999999999997 3469999999999999999999997 999


Q ss_pred             ceeccCCeE-EEEeCCcccHHHHHHHHHHhCCCC-----ccccCCcc---------------------cHHHHHhhhhcC
Q psy16770        207 IALLTDGRT-SFFKEPSFSVQKMVEFFRLKLPYK-----LIVPLSAT---------------------NVDAFLDNWRED  259 (554)
Q Consensus       207 i~~~~~g~~-~~y~~g~~~~~~i~~fl~~~~~~~-----~v~~~t~~---------------------~~~~fl~~~~~~  259 (554)
                      +++|.+|.. ..++.+.|+.+.|+.|+.+..+..     .....+.+                     .+..+..+|+..
T Consensus       222 ~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  301 (383)
T KOG0191|consen  222 LKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGH  301 (383)
T ss_pred             EEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhcchhhc
Confidence            999988877 777778889999999999887652     11111111                     122333344333


Q ss_pred             CceEEEEEecCCchhHHHHHHh-hccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCC
Q psy16770        260 NKVHALLFQRSLPVRLRYLINA-FKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKED  322 (554)
Q Consensus       260 ~~~~v~~f~~~~~~~~~~~~~a-~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~  322 (554)
                      +......|        ...+.. ......+.+..++|..  -..++.+..++. +|++.+++..
T Consensus       302 ~~~~~~~~--------~~~~~~~~~~~~~~~~~k~~~~~--~~~~~~~~~~~~-~~~~~~~~~~  354 (383)
T KOG0191|consen  302 CGGFAPVY--------EDKAELGYPDLSKIKAAKLDCAL--LKSLCQKAIVRG-YPTIKLYNYG  354 (383)
T ss_pred             ccccchhH--------HHHHhccccccccceeecccccc--ccchhhHhhhhc-CceeEeeccc
Confidence            33332222        222222 1235567777777764  333788888886 8999998763

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.53  E-value=1.3e-14  Score=155.39  Aligned_cols=69  Identities=39%  Similarity=0.754  Sum_probs=66.0

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      .|||++|||+++|+.++||+|||+|++++|||+++++.+.++|++|++||++|+||.+|+.||.+|..+
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG   70 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG   70 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence            699999999999999999999999999999999988888899999999999999999999999998765

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.52  E-value=3.2e-14  Score=125.95  Aligned_cols=100  Identities=9%  Similarity=0.231  Sum_probs=81.8

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce-ecc
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA-LLT  211 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~-~~~  211 (554)
                      +.++|++.|... .+++++|.|||+||++|+.+.|.++++++++.+. +.|++||++++++++++|+|++ .||++ +|+
T Consensus        10 s~~e~d~~I~~~-~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~dla~~y~I~~-~~t~~~ffk   86 (142)
T PLN00410         10 SGWAVDQAILAE-EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVPDFNTMYELYD-PCTVMFFFR   86 (142)
T ss_pred             CHHHHHHHHHhc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCHHHHHHcCccC-CCcEEEEEE
Confidence            467888888633 5789999999999999999999999999999864 8899999999999999999996 87777 889


Q ss_pred             CCe-EEEEeCC--------cccHHHHHHHHHHh
Q psy16770        212 DGR-TSFFKEP--------SFSVQKMVEFFRLK  235 (554)
Q Consensus       212 ~g~-~~~y~~g--------~~~~~~i~~fl~~~  235 (554)
                      +|+ .+.+..|        ..+.++|++-+...
T Consensus        87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~  119 (142)
T PLN00410         87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETV  119 (142)
T ss_pred             CCeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence            998 5666656        34556665555433

>KOG0907|consensus

Probab=99.52  E-value=4.8e-14  Score=119.24  Aligned_cols=85  Identities=20%  Similarity=0.389  Sum_probs=75.4

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccH
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSV  225 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~  225 (554)
                      .+++++|.|||+|||+|+.++|.+.+++.++.+  +.|.+||+++..++|++++|+. .||++++++|+.+...-|. +.
T Consensus        20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde~~~~~~~~~V~~-~PTf~f~k~g~~~~~~vGa-~~   95 (106)
T KOG0907|consen   20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDELEEVAKEFNVKA-MPTFVFYKGGEEVDEVVGA-NK   95 (106)
T ss_pred             CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecccCHhHHHhcCceE-eeEEEEEECCEEEEEEecC-CH
Confidence            468999999999999999999999999999985  8999999999999999999997 9999999999987766564 55


Q ss_pred             HHHHHHHHH
Q psy16770        226 QKMVEFFRL  234 (554)
Q Consensus       226 ~~i~~fl~~  234 (554)
                      +.+.+.+.+
T Consensus        96 ~~l~~~i~~  104 (106)
T KOG0907|consen   96 AELEKKIAK  104 (106)
T ss_pred             HHHHHHHHh
Confidence            677776654

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.52  E-value=4e-13  Score=126.21  Aligned_cols=180  Identities=18%  Similarity=0.324  Sum_probs=129.5

Q ss_pred             EecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCC-CChhHHHhHH
Q psy16770        267 FQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNS-IPVPTLQDIT  344 (554)
Q Consensus       267 f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~-~~~~~l~~fi  344 (554)
                      |.+..+.....+..++ .+++.+.||++     .+++++++++++  .|+|++|++..+++  ..+.+. ++.+.|.+||
T Consensus         1 F~~~~~~~~~~f~~~A~~~~~~~~F~~~-----~~~~~~~~~~~~--~p~i~~~k~~~~~~--~~y~~~~~~~~~l~~fI   71 (184)
T PF13848_consen    1 FPDKDSELFEIFEEAAEKLKGDYQFGVT-----FNEELAKKYGIK--EPTIVVYKKFDEKP--VVYDGDKFTPEELKKFI   71 (184)
T ss_dssp             ESTTTSHHHHHHHHHHHHHTTTSEEEEE-----E-HHHHHHCTCS--SSEEEEEECTTTSE--EEESSSTTSHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHhCcCCcEEEEE-----cHHHHHHHhCCC--CCcEEEeccCCCCc--eecccccCCHHHHHHHH
Confidence            3444555566666655 77888999999     588999999998  49999999855544  446665 8999999999


Q ss_pred             hcCCCcccccccchhhhhhcCCCC-ceEEEEEcC-CCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCC
Q psy16770        345 DNNPYLTLPRISSQSMLDAVCPVK-KLCVVLFSE-DSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTS  422 (554)
Q Consensus       345 ~~~~~~~v~~lt~~~~~~~~c~~~-~lcvvl~~~-~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~  422 (554)
                      ..+++|+++++|..++....- .+ +..++++.. +....+...+.++++|++  +++ .+.|+|+|++..++++..|-.
T Consensus        72 ~~~~~P~v~~~t~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~--~~~-~~~f~~~d~~~~~~~~~~~~i  147 (184)
T PF13848_consen   72 KKNSFPLVPELTPENFEKLFS-SPKPPVLILFDNKDNESTEAFKKELQDIAKK--FKG-KINFVYVDADDFPRLLKYFGI  147 (184)
T ss_dssp             HHHSSTSCEEESTTHHHHHHS-TSSEEEEEEEETTTHHHHHHHHHHHHHHHHC--TTT-TSEEEEEETTTTHHHHHHTTT
T ss_pred             HHhccccccccchhhHHHHhc-CCCceEEEEEEcCCchhHHHHHHHHHHHHHh--cCC-eEEEEEeehHHhHHHHHHcCC
Confidence            999999999999877655443 33 445566653 344557778899999999  875 599999999988888887721


Q ss_pred             CCCCccccceEEEEEEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHh
Q psy16770        423 PEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRS  473 (554)
Q Consensus       423 ~~~~~~~~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~  473 (554)
                      .    +  .++|.++..+....+|.++..+        +.|.+.|.+||++
T Consensus       148 ~----~--~~~P~~vi~~~~~~~~~~~~~~--------~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  148 D----E--DDLPALVIFDSNKGKYYYLPEG--------EITPESIEKFLND  184 (184)
T ss_dssp             T----T--SSSSEEEEEETTTSEEEE--SS--------CGCHHHHHHHHHH
T ss_pred             C----C--ccCCEEEEEECCCCcEEcCCCC--------CCCHHHHHHHhcC
Confidence            1    1  3556555555444444443332        5789999999975

...

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.51  E-value=1.7e-14  Score=122.76  Aligned_cols=93  Identities=16%  Similarity=0.299  Sum_probs=79.6

Q ss_pred             ccccccccCCCCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEecC----cHHHHHHhCCcCCCCcc
Q psy16770        135 WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVHN----EQGLARRLGVGSQLPQI  207 (554)
Q Consensus       135 ~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~~----~~~l~~~~~v~~~~Pti  207 (554)
                      ++|.+.+   ..+++++|.||++||++|+.+.|.+   .++++.+++ ++.++.||+++    ...++++++|.+ +||+
T Consensus         2 ~~~~~~~---~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~-~Pti   76 (104)
T cd02953           2 AALAQAL---AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFG-PPTY   76 (104)
T ss_pred             HHHHHHH---HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCC-CCEE
Confidence            3456666   4678999999999999999999988   678888876 69999999987    678999999997 9999


Q ss_pred             eecc--CCeEEEEeCCcccHHHHHHHH
Q psy16770        208 ALLT--DGRTSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       208 ~~~~--~g~~~~y~~g~~~~~~i~~fl  232 (554)
                      ++|.  +|+......|..+.+.|.+++
T Consensus        77 ~~~~~~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          77 LFYGPGGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             EEECCCCCCCCcccccccCHHHHHHHh
Confidence            9997  788777676777889988876

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.51  E-value=3.2e-14  Score=122.73  Aligned_cols=87  Identities=17%  Similarity=0.218  Sum_probs=76.9

Q ss_pred             cccccc-ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLSTTH-WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~Lt~-~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +.+++. ++|.+.|   .++++++|.||+|||++|+.+.|.++++++++.  ++.|.+||+++++.++++|+|.+ +||+
T Consensus         6 v~~i~~~~~~~~~i---~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~~~~l~~~~~v~~-vPt~   79 (113)
T cd02989           6 YREVSDEKEFFEIV---KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEKAPFLVEKLNIKV-LPTV   79 (113)
T ss_pred             eEEeCCHHHHHHHH---hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcccCHHHHHHCCCcc-CCEE
Confidence            555666 8898888   356899999999999999999999999999885  48999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCC
Q psy16770        208 ALLTDGRTSFFKEP  221 (554)
Q Consensus       208 ~~~~~g~~~~y~~g  221 (554)
                      ++|++|+.+....|
T Consensus        80 l~fk~G~~v~~~~g   93 (113)
T cd02989          80 ILFKNGKTVDRIVG   93 (113)
T ss_pred             EEEECCEEEEEEEC
Confidence            99999988765544

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PHA03102 Small T antigen; Reviewed

Probab=99.50  E-value=2.5e-14  Score=127.53  Aligned_cols=66  Identities=29%  Similarity=0.445  Sum_probs=61.1

Q ss_pred             CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         19 LDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        19 ~d~y~~Lgv~~~a--~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ...|++|||+++|  |.++||+|||++++++|||+++   .+++|++|++||++|+|+.+|..||.+|..+
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg---~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~   72 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG---DEEKMKELNTLYKKFRESVKSLRDLDGEEDS   72 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc---hhHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence            4578999999999  9999999999999999999974   3579999999999999999999999999765

>PTZ00051 thioredoxin; Provisional

Probab=99.48  E-value=6.8e-14  Score=117.48  Aligned_cols=89  Identities=19%  Similarity=0.412  Sum_probs=77.1

Q ss_pred             cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCC
Q psy16770        134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG  213 (554)
Q Consensus       134 ~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g  213 (554)
                      .++|.+.+   +.+++++|.||++||++|+.+.|.++++++.+.  ++.++.||++++..++++++|.+ +||+++|++|
T Consensus         8 ~~~~~~~~---~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~~g   81 (98)
T PTZ00051          8 QAEFESTL---SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDELSEVAEKENITS-MPTFKVFKNG   81 (98)
T ss_pred             HHHHHHHH---hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcchHHHHHHCCCce-eeEEEEEeCC
Confidence            45666666   467899999999999999999999999999875  48999999999999999999997 9999999999


Q ss_pred             eEEEEeCCcccHHHHH
Q psy16770        214 RTSFFKEPSFSVQKMV  229 (554)
Q Consensus       214 ~~~~y~~g~~~~~~i~  229 (554)
                      +......|. ..++|.
T Consensus        82 ~~~~~~~G~-~~~~~~   96 (98)
T PTZ00051         82 SVVDTLLGA-NDEALK   96 (98)
T ss_pred             eEEEEEeCC-CHHHhh
Confidence            988777675 556664

>KOG0722|consensus

Probab=99.48  E-value=2.7e-14  Score=133.17  Aligned_cols=70  Identities=40%  Similarity=0.676  Sum_probs=66.2

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCC
Q psy16770         16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGT   85 (554)
Q Consensus        16 ~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~   85 (554)
                      |...|.|+||||++.++.++|.+|||+||+++|||+++++++.+.|..|..||++|.|.+.|..||-.-.
T Consensus        30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyald   99 (329)
T KOG0722|consen   30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALD   99 (329)
T ss_pred             ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence            6679999999999999999999999999999999999999989999999999999999999999997543

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.47  E-value=1.5e-13  Score=123.47  Aligned_cols=98  Identities=23%  Similarity=0.362  Sum_probs=81.8

Q ss_pred             cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc--HHHHHHhCCcCCCCcceec-
Q psy16770        134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE--QGLARRLGVGSQLPQIALL-  210 (554)
Q Consensus       134 ~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~--~~l~~~~~v~~~~Pti~~~-  210 (554)
                      ...|+..+   ..+++++|.|||+||++|+.+.|.+.++++.+.+ ++.|+.||++.+  ..++++|+|.+ +||+++| 
T Consensus        10 ~~~~~~a~---~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~~~~~V~~-iPt~v~~~   84 (142)
T cd02950          10 STPPEVAL---SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEIDRYRVDG-IPHFVFLD   84 (142)
T ss_pred             cCCHHHHH---hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHHHHcCCCC-CCEEEEEC
Confidence            34555555   4678999999999999999999999999999876 377888777654  58999999998 9999999 


Q ss_pred             cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        211 TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       211 ~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++|+.+....|....+.|.+++.+.+
T Consensus        85 ~~G~~v~~~~G~~~~~~l~~~l~~l~  110 (142)
T cd02950          85 REGNEEGQSIGLQPKQVLAQNLDALV  110 (142)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence            58998877777777888988888775

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.47  E-value=1.8e-13  Score=114.88  Aligned_cols=87  Identities=22%  Similarity=0.371  Sum_probs=78.6

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCccc
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFS  224 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~  224 (554)
                      ..+++++|.||++||+.|+.+.|.++++++.+.+ ++.++.||++++++++++++|.+ +||+.+|++|+.+....|..+
T Consensus        11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~-vPt~~i~~~g~~v~~~~g~~~   88 (97)
T cd02949          11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMG-TPTVQFFKDKELVKEISGVKM   88 (97)
T ss_pred             hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCee-ccEEEEEECCeEEEEEeCCcc
Confidence            3678999999999999999999999999999976 59999999999999999999997 999999999998777767778


Q ss_pred             HHHHHHHHH
Q psy16770        225 VQKMVEFFR  233 (554)
Q Consensus       225 ~~~i~~fl~  233 (554)
                      .+.|.+|++
T Consensus        89 ~~~~~~~l~   97 (97)
T cd02949          89 KSEYREFIE   97 (97)
T ss_pred             HHHHHHhhC
Confidence            888888863

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.45  E-value=2.1e-13  Score=126.79  Aligned_cols=89  Identities=13%  Similarity=0.144  Sum_probs=78.0

Q ss_pred             cccccc-ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLSTTH-WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~Lt~-~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +.+++. ++|.+.|...+.+.+++|.||+|||++|+.+.|.++++|+.+.  .++|++||++.. .++.+|+|.+ +||+
T Consensus        64 v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~-~l~~~f~v~~-vPTl  139 (175)
T cd02987          64 VYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT-GASDEFDTDA-LPAL  139 (175)
T ss_pred             EEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch-hhHHhCCCCC-CCEE
Confidence            667787 9999998644445699999999999999999999999999985  499999999988 8999999997 9999


Q ss_pred             eeccCCeEEEEeCC
Q psy16770        208 ALLTDGRTSFFKEP  221 (554)
Q Consensus       208 ~~~~~g~~~~y~~g  221 (554)
                      ++|++|+.+....|
T Consensus       140 llyk~G~~v~~~vG  153 (175)
T cd02987         140 LVYKGGELIGNFVR  153 (175)
T ss_pred             EEEECCEEEEEEec
Confidence            99999998765543

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.45  E-value=1.4e-13  Score=116.24  Aligned_cols=82  Identities=16%  Similarity=0.257  Sum_probs=71.7

Q ss_pred             ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCe
Q psy16770        135 WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR  214 (554)
Q Consensus       135 ~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~  214 (554)
                      ++|++.|... .+++++|.|+|+||++|+.+.|.++++|+++++. +.|.+||+++.++++++|+|.. .||+++|++|+
T Consensus         3 ~~~d~~i~~~-~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev~dva~~y~I~a-mPtfvffkngk   79 (114)
T cd02986           3 KEVDQAIKST-AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKVPVYTQYFDISY-IPSTIFFFNGQ   79 (114)
T ss_pred             HHHHHHHHhc-CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccccHHHHHhcCcee-CcEEEEEECCc
Confidence            4566666533 5889999999999999999999999999999754 9999999999999999999997 99999999998


Q ss_pred             EEEEe
Q psy16770        215 TSFFK  219 (554)
Q Consensus       215 ~~~y~  219 (554)
                      .+.-.
T Consensus        80 h~~~d   84 (114)
T cd02986          80 HMKVD   84 (114)
T ss_pred             EEEEe
Confidence            75443

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.42  E-value=2.9e-13  Score=146.67  Aligned_cols=109  Identities=15%  Similarity=0.254  Sum_probs=93.9

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC-CEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL-GVGFFTVHVHNEQGLARRLGVGSQLP  205 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~-~v~~~~Vd~~~~~~l~~~~~v~~~~P  205 (554)
                      ..+..|+.++|++.|.  ..+++++|.||||||++|+.+.|.|+++++.+++. .+.++++||+.+..+|+++++++ +|
T Consensus       357 ~~v~~l~~~~f~~~v~--~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~-~P  433 (477)
T PTZ00102        357 GPVKVVVGNTFEEIVF--KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSA-FP  433 (477)
T ss_pred             CCeEEecccchHHHHh--cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcc-cC
Confidence            3577889999999876  45789999999999999999999999999998753 48999999999999999999997 99


Q ss_pred             cceeccCCeE--EEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        206 QIALLTDGRT--SFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       206 ti~~~~~g~~--~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      |+++|++|..  ..|. |.++.++|.+|+.+....+
T Consensus       434 t~~~~~~~~~~~~~~~-G~~~~~~l~~~i~~~~~~~  468 (477)
T PTZ00102        434 TILFVKAGERTPIPYE-GERTVEGFKEFVNKHATNP  468 (477)
T ss_pred             eEEEEECCCcceeEec-CcCCHHHHHHHHHHcCCCC
Confidence            9999987754  3455 5568999999999987643

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.41  E-value=8.3e-13  Score=108.45  Aligned_cols=91  Identities=26%  Similarity=0.535  Sum_probs=77.9

Q ss_pred             cccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeE
Q psy16770        136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRT  215 (554)
Q Consensus       136 ~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~  215 (554)
                      +|++.+.   .+++++|.||++||++|..+.|.++++++. .+ ++.++.+|++.+..+++++++.+ +||++++.+|+.
T Consensus         2 ~~~~~~~---~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~-~~~~~~i~~~~~~~~~~~~~v~~-~P~~~~~~~g~~   75 (93)
T cd02947           2 EFEELIK---SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP-KVKFVKVDVDENPELAEEYGVRS-IPTFLFFKNGKE   75 (93)
T ss_pred             chHHHHh---cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC-CceEEEEECCCChhHHHhcCccc-ccEEEEEECCEE
Confidence            4566663   348999999999999999999999999988 33 69999999999999999999997 999999999987


Q ss_pred             EEEeCCcccHHHHHHHH
Q psy16770        216 SFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       216 ~~y~~g~~~~~~i~~fl  232 (554)
                      +....|..+.+.|.+|+
T Consensus        76 ~~~~~g~~~~~~l~~~i   92 (93)
T cd02947          76 VDRVVGADPKEELEEFL   92 (93)
T ss_pred             EEEEecCCCHHHHHHHh
Confidence            65555656778888876

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.41  E-value=1.3e-12  Score=115.29  Aligned_cols=123  Identities=20%  Similarity=0.334  Sum_probs=95.8

Q ss_pred             cccccccchhhhhhcCCCCceEEEEEcCCC-----CcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCC
Q psy16770        350 LTLPRISSQSMLDAVCPVKKLCVVLFSEDS-----PEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPE  424 (554)
Q Consensus       350 ~~v~~lt~~~~~~~~c~~~~lcvvl~~~~~-----~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~  424 (554)
                      |.+.+||+++.++..|..+++|||.|.+..     ++.++..+.|+++|++  |+++++.|+|+|++++..+.+.|-.. 
T Consensus         2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~--~kgk~i~Fv~vd~~~~~~~~~~fgl~-   78 (130)
T cd02983           2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEK--FKKKPWGWLWTEAGAQLDLEEALNIG-   78 (130)
T ss_pred             CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHH--hcCCcEEEEEEeCcccHHHHHHcCCC-
Confidence            568899999999999977799999999753     2345678899999999  99877999999999999999988211 


Q ss_pred             CCccccceEEEEEEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCCCccccccccc
Q psy16770        425 DSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKE  490 (554)
Q Consensus       425 ~~~~~~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~~~~~~~~lp~  490 (554)
                        .   .++|++.+.+.++.||..+++         ++|.++|.+|+++++.|+.. ...-..+|.
T Consensus        79 --~---~~~P~v~i~~~~~~KY~~~~~---------~~t~e~i~~Fv~~~l~Gkl~-~~~~~~~p~  129 (130)
T cd02983          79 --G---FGYPAMVAINFRKMKFATLKG---------SFSEDGINEFLRELSYGRGP-TLPVNGLPK  129 (130)
T ss_pred             --c---cCCCEEEEEecccCccccccC---------ccCHHHHHHHHHHHHcCCcc-cccCCCCCC
Confidence              1   256666555655559987666         47999999999999999986 333224543

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=5.3e-13  Score=129.47  Aligned_cols=68  Identities=54%  Similarity=0.916  Sum_probs=63.6

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--HHHHHHHHHHHHHHcCChHHHHhhhccC
Q psy16770         17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT--AQEKFLQLTEAYNILSDAERRKQYDLFG   84 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~--~~~~~~~i~~Ay~~L~~~~~r~~yd~~~   84 (554)
                      ...|+|+||||+++|+..||++|||++++++|||+++...  +.++|..|++||++|+|+.+|..||..+
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            4579999999999999999999999999999999998543  8999999999999999999999999974

>KOG0908|consensus

Probab=99.37  E-value=9.2e-13  Score=123.36  Aligned_cols=102  Identities=20%  Similarity=0.368  Sum_probs=89.6

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD  212 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~  212 (554)
                      ++++|+..+.. ...+.++|.|+|.|||+|++++|.|..++..+.  +..|.+||+++.+.++..+||+. .||+++|+|
T Consensus         8 ~d~df~~~ls~-ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~c~~taa~~gV~a-mPTFiff~n   83 (288)
T KOG0908|consen    8 SDSDFQRELSA-AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDECRGTAATNGVNA-MPTFIFFRN   83 (288)
T ss_pred             CcHHHHHhhhc-cCceEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHHhhchhhhcCccc-CceEEEEec
Confidence            46778877743 356799999999999999999999999999996  47999999999999999999997 999999999


Q ss_pred             CeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        213 GRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       213 g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      |..+....|. ++..|.+-+.+.+..+
T Consensus        84 g~kid~~qGA-d~~gLe~kv~~~~sts  109 (288)
T KOG0908|consen   84 GVKIDQIQGA-DASGLEEKVAKYASTS  109 (288)
T ss_pred             CeEeeeecCC-CHHHHHHHHHHHhccC
Confidence            9988888775 8899999998886544

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.36  E-value=1.1e-12  Score=120.81  Aligned_cols=66  Identities=26%  Similarity=0.451  Sum_probs=58.0

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh------hHHHHHHHHHHHHHHcCChHHHHhhhccC
Q psy16770         19 LDPYETLGVPRT--ASLQEIRKNYKRLVVEWHPDKNNDP------TAQEKFLQLTEAYNILSDAERRKQYDLFG   84 (554)
Q Consensus        19 ~d~y~~Lgv~~~--a~~~~ik~ay~~l~~~~hPd~~~~~------~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~   84 (554)
                      .|||++|||+++  ++..+||++||++++++|||+..+.      .+.+++..||+||++|+||.+|+.|+...
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l   74 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL   74 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence            489999999996  6789999999999999999997532      14578999999999999999999999643

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.35  E-value=1.4e-12  Score=119.33  Aligned_cols=66  Identities=30%  Similarity=0.494  Sum_probs=57.8

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChh----HHHHHHHHHHHHHHcCChHHHHhhhccC
Q psy16770         19 LDPYETLGVPRT--ASLQEIRKNYKRLVVEWHPDKNNDPT----AQEKFLQLTEAYNILSDAERRKQYDLFG   84 (554)
Q Consensus        19 ~d~y~~Lgv~~~--a~~~~ik~ay~~l~~~~hPd~~~~~~----~~~~~~~i~~Ay~~L~~~~~r~~yd~~~   84 (554)
                      .|||++|||+++  ++..+|+++||+|++++|||++.++.    +.+.+..|++||++|+||.+|+.|+...
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l   73 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL   73 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence            589999999997  78999999999999999999986432    2345789999999999999999998754

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.35  E-value=1.8e-12  Score=109.73  Aligned_cols=87  Identities=21%  Similarity=0.329  Sum_probs=78.2

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCc--CCCCcceeccC--CeEEEEeCCc
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVG--SQLPQIALLTD--GRTSFFKEPS  222 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~--~~~Pti~~~~~--g~~~~y~~g~  222 (554)
                      ++++++.|+++||++|+.+.|.++++|+++++ .+.|+.||+++++.+++.+|+.  + +|+++++++  |+...+.++.
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~~~~~~~~~i~~~~-~P~~~~~~~~~~~k~~~~~~~   89 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDFGRHLEYFGLKEED-LPVIAIINLSDGKKYLMPEEE   89 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhhHHHHHHcCCChhh-CCEEEEEecccccccCCCccc
Confidence            57999999999999999999999999999997 4999999999999999999999  8 999999987  6666666665


Q ss_pred             ccHHHHHHHHHHh
Q psy16770        223 FSVQKMVEFFRLK  235 (554)
Q Consensus       223 ~~~~~i~~fl~~~  235 (554)
                      .+.++|.+|+.+.
T Consensus        90 ~~~~~l~~fi~~~  102 (103)
T cd02982          90 LTAESLEEFVEDF  102 (103)
T ss_pred             cCHHHHHHHHHhh
Confidence            5889999999764

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.35  E-value=1.5e-12  Score=122.64  Aligned_cols=87  Identities=13%  Similarity=0.114  Sum_probs=75.4

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      +..+|..+|...|...+.+.+++|.||++||++|+.+.|.++++|+.+.  .++|++||++..   +.+|++++ +||++
T Consensus        84 v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~---~~~~~i~~-lPTll  157 (192)
T cd02988          84 VYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQC---IPNYPDKN-LPTIL  157 (192)
T ss_pred             EEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHh---HhhCCCCC-CCEEE
Confidence            7778999999888655455789999999999999999999999999985  489999999753   68999997 99999


Q ss_pred             eccCCeEEEEeCC
Q psy16770        209 LLTDGRTSFFKEP  221 (554)
Q Consensus       209 ~~~~g~~~~y~~g  221 (554)
                      +|++|+.+...-|
T Consensus       158 iyk~G~~v~~ivG  170 (192)
T cd02988         158 VYRNGDIVKQFIG  170 (192)
T ss_pred             EEECCEEEEEEeC
Confidence            9999998765544

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.34  E-value=2.3e-12  Score=111.20  Aligned_cols=93  Identities=13%  Similarity=0.194  Sum_probs=75.9

Q ss_pred             ccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeE-
Q psy16770        137 FEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRT-  215 (554)
Q Consensus       137 F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~-  215 (554)
                      |.+.+   ..+..++|.||++||++|+.+.|.++++++.. + ++.+..||+++++.++++|+|.+ +||+++|++|.. 
T Consensus        15 ~~~~l---~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d~~~~l~~~~~v~~-vPt~~i~~~g~~~   88 (113)
T cd02975          15 FFKEM---KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFDEDKEKAEKYGVER-VPTTIFLQDGGKD   88 (113)
T ss_pred             HHHHh---CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCCcCHHHHHHcCCCc-CCEEEEEeCCeec
Confidence            54544   34567889999999999999999999999886 4 48999999999999999999997 999999987643 


Q ss_pred             --EEEeCCcccHHHHHHHHHHhC
Q psy16770        216 --SFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       216 --~~y~~g~~~~~~i~~fl~~~~  236 (554)
                        +.+.| ..+..++.+|+...+
T Consensus        89 ~~~~~~G-~~~~~el~~~i~~i~  110 (113)
T cd02975          89 GGIRYYG-LPAGYEFASLIEDIV  110 (113)
T ss_pred             ceEEEEe-cCchHHHHHHHHHHH
Confidence              34554 456788888887543

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>KOG0720|consensus

Probab=99.33  E-value=9.6e-13  Score=133.15  Aligned_cols=69  Identities=39%  Similarity=0.669  Sum_probs=66.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTT   86 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~   86 (554)
                      ..|+|.+|||++++|+++|||.||++|...|||||..+.|+|.|..+..||++|+|+++|+.||.....
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k  302 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK  302 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999999999999999986544

>PTZ00062 glutaredoxin; Provisional

Probab=99.32  E-value=2.1e-11  Score=115.25  Aligned_cols=162  Identities=12%  Similarity=0.085  Sum_probs=109.8

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD  212 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~  212 (554)
                      +.++|.+.+.  +..+..+++|+|+||+.|+.+.|.+.++++++.  .+.|+.||++        |+|.+ +||+++|++
T Consensus         5 ~~ee~~~~i~--~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d--------~~V~~-vPtfv~~~~   71 (204)
T PTZ00062          5 KKEEKDKLIE--SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA--------DANNE-YGVFEFYQN   71 (204)
T ss_pred             CHHHHHHHHh--cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc--------cCccc-ceEEEEEEC
Confidence            4566777773  234788999999999999999999999999985  4999999987        99997 999999999


Q ss_pred             CeEEEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecC--CchhHHHHHH--hhccCCce
Q psy16770        213 GRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRS--LPVRLRYLIN--AFKHRTTI  288 (554)
Q Consensus       213 g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~--~~~~~~~~~~--a~~~~~~v  288 (554)
                      |+.+....|. ++..|.+++.+.......     +.+.+++.... ...+ |++|.+.  ..+...+-..  ..--...+
T Consensus        72 g~~i~r~~G~-~~~~~~~~~~~~~~~~~~-----~~~~~~v~~li-~~~~-Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i  143 (204)
T PTZ00062         72 SQLINSLEGC-NTSTLVSFIRGWAQKGSS-----EDTVEKIERLI-RNHK-ILLFMKGSKTFPFCRFSNAVVNMLNSSGV  143 (204)
T ss_pred             CEEEeeeeCC-CHHHHHHHHHHHcCCCCH-----HHHHHHHHHHH-hcCC-EEEEEccCCCCCCChhHHHHHHHHHHcCC
Confidence            9999888776 789999999998775522     23445554431 2333 4444432  2222222211  11112367


Q ss_pred             EEEEEEccCCCChhHHhHh----CCCCCCceEEE
Q psy16770        289 VFGVIVYDQEDSSSVFQRF----KVPGDKDSLLI  318 (554)
Q Consensus       289 ~Fg~v~~~~~~~~~l~~k~----~i~~~~Ptlvv  318 (554)
                      .|..++..  .++++.+.+    +-.. .|.|.+
T Consensus       144 ~y~~~DI~--~d~~~~~~l~~~sg~~T-vPqVfI  174 (204)
T PTZ00062        144 KYETYNIF--EDPDLREELKVYSNWPT-YPQLYV  174 (204)
T ss_pred             CEEEEEcC--CCHHHHHHHHHHhCCCC-CCeEEE
Confidence            78888876  455554433    3233 566554

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.32  E-value=3.6e-12  Score=111.31  Aligned_cols=99  Identities=13%  Similarity=0.179  Sum_probs=79.4

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-----------HHHH
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-----------GLAR  196 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-----------~l~~  196 (554)
                      ....+|.++|.+.+   .+++.++|.|+++||++|+.+.|.+++++++.   ++.+..||.+.+.           ++.+
T Consensus         7 ~~~~it~~~~~~~i---~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~~   80 (122)
T TIGR01295         7 GLEVTTVVRALEAL---DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFRS   80 (122)
T ss_pred             cceecCHHHHHHHH---HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHHH
Confidence            35567888999988   46778999999999999999999999999983   3678888887543           5556


Q ss_pred             HhC----CcCCCCcceeccCCeEEEEe-CCcccHHHHHHHHH
Q psy16770        197 RLG----VGSQLPQIALLTDGRTSFFK-EPSFSVQKMVEFFR  233 (554)
Q Consensus       197 ~~~----v~~~~Pti~~~~~g~~~~y~-~g~~~~~~i~~fl~  233 (554)
                      +++    |.+ +||+++|++|+.+... |+..+.++|.+|+.
T Consensus        81 ~~~i~~~i~~-~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        81 RFGIPTSFMG-TPTFVHITDGKQVSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             HcCCcccCCC-CCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence            654    665 9999999999887766 44667889988863

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.31  E-value=4e-12  Score=116.82  Aligned_cols=68  Identities=28%  Similarity=0.399  Sum_probs=59.9

Q ss_pred             CCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh------hHHHHHHHHHHHHHHcCChHHHHhhhccC
Q psy16770         17 VSLDPYETLGVPRT--ASLQEIRKNYKRLVVEWHPDKNNDP------TAQEKFLQLTEAYNILSDAERRKQYDLFG   84 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~--a~~~~ik~ay~~l~~~~hPd~~~~~------~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~   84 (554)
                      ...|||++||++++  .+..+|+++||+|++++|||++.+.      .+.+.+..||+||++|+||.+|+.|+...
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l   77 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLAL   77 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence            56899999999997  5689999999999999999998642      25567999999999999999999999744

>KOG0550|consensus

Probab=99.29  E-value=3.9e-12  Score=127.36  Aligned_cols=75  Identities=40%  Similarity=0.588  Sum_probs=67.4

Q ss_pred             HHhhccCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C-hhHHHHHHHHHHHHHHcCChHHHHhhhccC
Q psy16770         10 VLFINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-D-PTAQEKFLQLTEAYNILSDAERRKQYDLFG   84 (554)
Q Consensus        10 ~~~~~~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~-~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~   84 (554)
                      ..-+.-++..|+|+|||+++.++..|||+|||++++.||||++. + .+++.+|.++-+||.||+||.+|.+||..-
T Consensus       364 ~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~  440 (486)
T KOG0550|consen  364 QLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ  440 (486)
T ss_pred             HHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence            33445678899999999999999999999999999999999986 3 578899999999999999999999999843

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.29  E-value=5.8e-12  Score=116.35  Aligned_cols=67  Identities=24%  Similarity=0.395  Sum_probs=57.6

Q ss_pred             CCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC-hhH-----HHHHHHHHHHHHHcCChHHHHhhhcc
Q psy16770         17 VSLDPYETLGVPRT--ASLQEIRKNYKRLVVEWHPDKNND-PTA-----QEKFLQLTEAYNILSDAERRKQYDLF   83 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~--a~~~~ik~ay~~l~~~~hPd~~~~-~~~-----~~~~~~i~~Ay~~L~~~~~r~~yd~~   83 (554)
                      ...|||++|||+++  ++..+|+++||+|++++|||++++ +.+     .+.+..||+||++|+||.+|..|+..
T Consensus         4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~   78 (176)
T PRK03578          4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH   78 (176)
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence            45899999999995  678999999999999999999863 332     33458999999999999999999963

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.28  E-value=2.3e-11  Score=98.39  Aligned_cols=80  Identities=20%  Similarity=0.348  Sum_probs=68.8

Q ss_pred             EEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHH
Q psy16770        150 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMV  229 (554)
Q Consensus       150 ~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~  229 (554)
                      .+..||++||++|+.+.|.+++++++++. .+.+..||+++++++++++|+.+ +||+++  +|+. .+.| ..+.+.|.
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~-vPt~~~--~g~~-~~~G-~~~~~~l~   75 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMENPQKAMEYGIMA-VPAIVI--NGDV-EFIG-APTKEELV   75 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccCHHHHHHcCCcc-CCEEEE--CCEE-EEec-CCCHHHHH
Confidence            46789999999999999999999999875 49999999999999999999997 999986  7763 4554 45789999


Q ss_pred             HHHHHh
Q psy16770        230 EFFRLK  235 (554)
Q Consensus       230 ~fl~~~  235 (554)
                      +++.+.
T Consensus        76 ~~l~~~   81 (82)
T TIGR00411        76 EAIKKR   81 (82)
T ss_pred             HHHHhh
Confidence            988764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.24  E-value=1.9e-11  Score=107.51  Aligned_cols=91  Identities=14%  Similarity=0.250  Sum_probs=74.2

Q ss_pred             CCC-CcEEEEEEcccccccccchHHHH---HHHHHhCCCCEEEEEEEecCc-------------HHHHHHhCCcCCCCcc
Q psy16770        145 SYT-TPHLILFYSDWCFACLQVEPIFK---KLMDELSPLGVGFFTVHVHNE-------------QGLARRLGVGSQLPQI  207 (554)
Q Consensus       145 ~~~-~~~lV~Fya~wC~~C~~l~p~~~---~~a~~l~~~~v~~~~Vd~~~~-------------~~l~~~~~v~~~~Pti  207 (554)
                      ..+ ++++|.||++||++|+++.|.+.   .+.+.+++ ++.+..||.+.+             ..++.+|+|.+ +||+
T Consensus        11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~-~Pt~   88 (125)
T cd02951          11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF-TPTV   88 (125)
T ss_pred             HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc-ccEE
Confidence            356 89999999999999999999885   55566654 588999998864             78999999997 9999


Q ss_pred             eeccC--CeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        208 ALLTD--GRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       208 ~~~~~--g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      ++|.+  |+.+....|..+.+.+.+++...+.
T Consensus        89 ~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          89 IFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             EEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence            99965  5777777676788888888876543

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.23  E-value=1.3e-11  Score=133.09  Aligned_cols=107  Identities=17%  Similarity=0.339  Sum_probs=90.6

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCcHHHHHHhCCcCCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNEQGLARRLGVGSQL  204 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~~~l~~~~~v~~~~  204 (554)
                      ..+..|+.++|.+.|.  +.+++++|.|||+||++|+.+.|.|+++++.+++.  ++.++++||+.+.-. . ++|.+ +
T Consensus       346 ~~v~~l~~~~f~~~v~--~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~-~-~~i~~-~  420 (462)
T TIGR01130       346 GPVKVLVGKNFDEIVL--DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVP-P-FEVEG-F  420 (462)
T ss_pred             CccEEeeCcCHHHHhc--cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccC-C-CCccc-c
Confidence            3567899999999986  45789999999999999999999999999999872  599999999987533 3 99997 9


Q ss_pred             CcceeccCCeE---EEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        205 PQIALLTDGRT---SFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       205 Pti~~~~~g~~---~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      ||+++|++|..   ..+.|+ ++.++|++|+.+....+
T Consensus       421 Pt~~~~~~~~~~~~~~~~g~-~~~~~l~~~l~~~~~~~  457 (462)
T TIGR01130       421 PTIKFVPAGKKSEPVPYDGD-RTLEDFSKFIAKHATFP  457 (462)
T ss_pred             CEEEEEeCCCCcCceEecCc-CCHHHHHHHHHhcCCCC
Confidence            99999987754   466654 58899999999887554

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.23  E-value=7.8e-12  Score=105.61  Aligned_cols=53  Identities=28%  Similarity=0.402  Sum_probs=48.3

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcC
Q psy16770         17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILS   72 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~   72 (554)
                      ...++|+||||++++|.+|||++||+|++++|||++   ++.+.|.+|++||++|.
T Consensus        63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence            347999999999999999999999999999999985   45678999999999985

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.18  E-value=3.2e-11  Score=104.10  Aligned_cols=81  Identities=19%  Similarity=0.379  Sum_probs=68.1

Q ss_pred             cccccccccCCCCCCcEEEEEEc-------ccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------cHHHHHHhC
Q psy16770        134 HWNFEKNYIPKSYTTPHLILFYS-------DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------EQGLARRLG  199 (554)
Q Consensus       134 ~~~F~~~v~~~~~~~~~lV~Fya-------~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------~~~l~~~~~  199 (554)
                      .++|.+.|.. ..+++++|.|||       +||++|+.+.|.+++++.++.+ ++.|.+||+++       +..++.+++
T Consensus         9 ~~~f~~~i~~-~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~~~~~   86 (119)
T cd02952           9 YEEFLKLLKS-HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFRTDPK   86 (119)
T ss_pred             HHHHHHHHHh-cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhHhccC
Confidence            4566677742 236799999999       9999999999999999999975 48999999976       469999999


Q ss_pred             Cc-CCCCcceeccCCeEEE
Q psy16770        200 VG-SQLPQIALLTDGRTSF  217 (554)
Q Consensus       200 v~-~~~Pti~~~~~g~~~~  217 (554)
                      |. + +||+++|++|+.+.
T Consensus        87 I~~~-iPT~~~~~~~~~l~  104 (119)
T cd02952          87 LTTG-VPTLLRWKTPQRLV  104 (119)
T ss_pred             cccC-CCEEEEEcCCceec
Confidence            98 9 99999998775443

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>KOG0714|consensus

Probab=99.14  E-value=4.9e-11  Score=120.84  Aligned_cols=69  Identities=45%  Similarity=0.868  Sum_probs=64.3

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP--TAQEKFLQLTEAYNILSDAERRKQYDLFGTT   86 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~--~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~   86 (554)
                      ..|+|++|||.+.|+.++|++|||+++++||||+++.+  .+.++|.+|.+||++|+|+.+|..||.+|..
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~   72 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEE   72 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcc
Confidence            46999999999999999999999999999999998876  5667899999999999999999999999983

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.13  E-value=4.1e-11  Score=118.61  Aligned_cols=58  Identities=34%  Similarity=0.580  Sum_probs=51.8

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------hhHHHHHHHHHHHHHHcCCh
Q psy16770         17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND--------PTAQEKFLQLTEAYNILSDA   74 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~--------~~~~~~~~~i~~Ay~~L~~~   74 (554)
                      ...|+|++|||++++|.++||+|||+|+++||||+..+        +.+.++|++|++||++|+..
T Consensus       198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            34799999999999999999999999999999999642        34789999999999999863

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.12  E-value=1.1e-10  Score=117.39  Aligned_cols=73  Identities=38%  Similarity=0.738  Sum_probs=66.1

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------hhHHHHHHHHHHHHHHcCChHHHHhhhccCCCCC
Q psy16770         16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND------PTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDG   88 (554)
Q Consensus        16 ~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~------~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~~   88 (554)
                      ....|||||||++.+++..+||++||+|+.++||||.+.      ..-++.+..|++||+.|+|..+|..|-.+|..+.
T Consensus        95 ~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~  173 (610)
T COG5407          95 RRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS  173 (610)
T ss_pred             HcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence            456899999999999999999999999999999999864      3457889999999999999999999999998653

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.10  E-value=3.1e-10  Score=90.51  Aligned_cols=74  Identities=26%  Similarity=0.340  Sum_probs=59.7

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVE  230 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~  230 (554)
                      -|.||++||++|+.+.|.++++++++.. .+.+.+||   +.+.+.++|+.+ .||+++  +|+.. ..|...+.+.|.+
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~---~~~~a~~~~v~~-vPti~i--~G~~~-~~G~~~~~~~l~~   73 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVT---DMNEILEAGVTA-TPGVAV--DGELV-IMGKIPSKEEIKE   73 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeC---CHHHHHHcCCCc-CCEEEE--CCEEE-EEeccCCHHHHHH
Confidence            3789999999999999999999999865 48888887   455688999997 999999  88776 5443335577776


Q ss_pred             HH
Q psy16770        231 FF  232 (554)
Q Consensus       231 fl  232 (554)
                      ++
T Consensus        74 ~l   75 (76)
T TIGR00412        74 IL   75 (76)
T ss_pred             Hh
Confidence            65

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PHA02125 thioredoxin-like protein

Probab=99.06  E-value=5.4e-10  Score=88.89  Aligned_cols=69  Identities=22%  Similarity=0.420  Sum_probs=54.1

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEE-eCCcccHHHHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFF-KEPSFSVQKMV  229 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y-~~g~~~~~~i~  229 (554)
                      ++.||++||++|+.+.|.++++.       +.++.||++++.+++++|+|.+ +||++   +|+.+.. .|...+..+|.
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~~~l~~~~~v~~-~PT~~---~g~~~~~~~G~~~~~~~l~   70 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEGVELTAKHHIRS-LPTLV---NTSTLDRFTGVPRNVAELK   70 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCCHHHHHHcCCce-eCeEE---CCEEEEEEeCCCCcHHHHH
Confidence            68999999999999999987542       5688999999999999999997 99987   5665544 34333444544


Q ss_pred             H
Q psy16770        230 E  230 (554)
Q Consensus       230 ~  230 (554)
                      +
T Consensus        71 ~   71 (75)
T PHA02125         71 E   71 (75)
T ss_pred             H
Confidence            3

>PHA02624 large T antigen; Provisional

Probab=99.05  E-value=1.4e-10  Score=123.66  Aligned_cols=62  Identities=32%  Similarity=0.521  Sum_probs=57.4

Q ss_pred             CCCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhh
Q psy16770         17 VSLDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD   81 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~a--~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd   81 (554)
                      ...++|++|||+++|  +.++||+|||++|+++|||+++   ++++|++|++||++|+|+.+|.+|.
T Consensus         9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG---deekfk~Ln~AYevL~d~~k~~r~~   72 (647)
T PHA02624          9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG---DEEKMKRLNSLYKKLQEGVKSARQS   72 (647)
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC---cHHHHHHHHHHHHHHhcHHHhhhcc
Confidence            356899999999999  9999999999999999999964   4689999999999999999999993

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.02  E-value=2.2e-08  Score=93.83  Aligned_cols=167  Identities=17%  Similarity=0.272  Sum_probs=125.8

Q ss_pred             chHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC--CeEEEEeCCcccHHHHHHHHHHhCCCCccc
Q psy16770        165 VEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD--GRTSFFKEPSFSVQKMVEFFRLKLPYKLIV  242 (554)
Q Consensus       165 l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~--g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~  242 (554)
                      +...|.++|+.+.+. +.|+.+.   +.++|+++++.  .|++++|++  ++...|.|...+.++|.+|+....-|. +.
T Consensus         8 ~~~~f~~~A~~~~~~-~~F~~~~---~~~~~~~~~~~--~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~-v~   80 (184)
T PF13848_consen    8 LFEIFEEAAEKLKGD-YQFGVTF---NEELAKKYGIK--EPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPL-VP   80 (184)
T ss_dssp             HHHHHHHHHHHHTTT-SEEEEEE----HHHHHHCTCS--SSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTS-CE
T ss_pred             HHHHHHHHHHhCcCC-cEEEEEc---HHHHHHHhCCC--CCcEEEeccCCCCceecccccCCHHHHHHHHHHhcccc-cc
Confidence            456899999999874 8998887   77899999997  399999977  456888876458899999999998887 77


Q ss_pred             cCCcccHHHHHhhhhcCCce-EEEEEecCCchh---HHHH--HHhhccCCceEEEEEEccCCCChhHHhHhCCC-CCCce
Q psy16770        243 PLSATNVDAFLDNWREDNKV-HALLFQRSLPVR---LRYL--INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVP-GDKDS  315 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~-~v~~f~~~~~~~---~~~~--~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~-~~~Pt  315 (554)
                      .+|.+++..+..    ...+ ++++|.+.....   +...  ..|.++++++.|++++++  ..+.+++.++++ .+.|+
T Consensus        81 ~~t~~n~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~--~~~~~~~~~~i~~~~~P~  154 (184)
T PF13848_consen   81 ELTPENFEKLFS----SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDAD--DFPRLLKYFGIDEDDLPA  154 (184)
T ss_dssp             EESTTHHHHHHS----TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETT--TTHHHHHHTTTTTSSSSE
T ss_pred             ccchhhHHHHhc----CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehH--HhHHHHHHcCCCCccCCE
Confidence            889999999884    3434 666676543332   2211  223377889999999987  568899999998 35899


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~  345 (554)
                      +++++..... ......+.++.+.|.+|++
T Consensus       155 ~vi~~~~~~~-~~~~~~~~~~~~~i~~Fl~  183 (184)
T PF13848_consen  155 LVIFDSNKGK-YYYLPEGEITPESIEKFLN  183 (184)
T ss_dssp             EEEEETTTSE-EEE--SSCGCHHHHHHHHH
T ss_pred             EEEEECCCCc-EEcCCCCCCCHHHHHHHhc
Confidence            9999864443 2233577889999999986

...

>KOG1150|consensus

Probab=99.01  E-value=3.7e-10  Score=102.03  Aligned_cols=65  Identities=34%  Similarity=0.605  Sum_probs=59.5

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHcCChHHHHhh
Q psy16770         16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND--PTAQEKFLQLTEAYNILSDAERRKQY   80 (554)
Q Consensus        16 ~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~--~~~~~~~~~i~~Ay~~L~~~~~r~~y   80 (554)
                      +.+.|||+||.|.|..+.++||+.||+|+...|||||++  +.|...|.-+.+||.+|-|+..|..-
T Consensus        50 yfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~  116 (250)
T KOG1150|consen   50 YFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC  116 (250)
T ss_pred             ccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            578999999999999999999999999999999999985  56889999999999999999765543

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.97  E-value=7.4e-10  Score=95.25  Aligned_cols=86  Identities=22%  Similarity=0.441  Sum_probs=63.3

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHH---HHHhCCCCEEEEEEEecCc--------------------HHHHHHhCCc
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKL---MDELSPLGVGFFTVHVHNE--------------------QGLARRLGVG  201 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~---a~~l~~~~v~~~~Vd~~~~--------------------~~l~~~~~v~  201 (554)
                      .++++.++.|++|||++|+++.+...+.   ...++. ++.+..+++...                    .++++++||+
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~   81 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN   81 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence            4678999999999999999999988753   444433 477888887753                    3589999999


Q ss_pred             CCCCcceec-cCCeEEEEeCCcccHHHHHHHH
Q psy16770        202 SQLPQIALL-TDGRTSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       202 ~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl  232 (554)
                      + +||++++ .+|+.+....|..+.++|.+++
T Consensus        82 g-tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   82 G-TPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             S-SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             c-cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            8 9999999 5899876666777889988764

...

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.96  E-value=2.6e-09  Score=103.10  Aligned_cols=82  Identities=16%  Similarity=0.227  Sum_probs=69.3

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ  226 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~  226 (554)
                      +...++.||++||++|+.+.|.+++++.+. + .+.+..||.+.++++++++||.+ +||++++++|..  +.|. ...+
T Consensus       133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~-~i~~~~vD~~~~~~~~~~~~V~~-vPtl~i~~~~~~--~~G~-~~~~  206 (215)
T TIGR02187       133 EPVRIEVFVTPTCPYCPYAVLMAHKFALAN-D-KILGEMIEANENPDLAEKYGVMS-VPKIVINKGVEE--FVGA-YPEE  206 (215)
T ss_pred             CCcEEEEEECCCCCCcHHHHHHHHHHHHhc-C-ceEEEEEeCCCCHHHHHHhCCcc-CCEEEEecCCEE--EECC-CCHH
Confidence            344555599999999999999999998874 3 48999999999999999999997 999999988864  5554 4778


Q ss_pred             HHHHHHHH
Q psy16770        227 KMVEFFRL  234 (554)
Q Consensus       227 ~i~~fl~~  234 (554)
                      .|.+|+.+
T Consensus       207 ~l~~~l~~  214 (215)
T TIGR02187       207 QFLEYILS  214 (215)
T ss_pred             HHHHHHHh
Confidence            99999875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.96  E-value=8e-10  Score=121.34  Aligned_cols=101  Identities=19%  Similarity=0.341  Sum_probs=79.5

Q ss_pred             ccccccccccC-CCCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEecC----cHHHHHHhCCcCCC
Q psy16770        133 THWNFEKNYIP-KSYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVHN----EQGLARRLGVGSQL  204 (554)
Q Consensus       133 t~~~F~~~v~~-~~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~~----~~~l~~~~~v~~~~  204 (554)
                      +.++|++.+.. +..+++++|+|||+||++|+.++|..   .++.+.++  ++.+.+||+++    +.+++++|++.+ +
T Consensus       459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g-~  535 (571)
T PRK00293        459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLG-L  535 (571)
T ss_pred             CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCC-C
Confidence            34566666532 23468999999999999999999875   67777776  47899999986    468999999998 9


Q ss_pred             Ccceecc-CCeEE--EEeCCcccHHHHHHHHHHhC
Q psy16770        205 PQIALLT-DGRTS--FFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       205 Pti~~~~-~g~~~--~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ||+++|. +|+.+  ....|..+.+++.+++++..
T Consensus       536 Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~  570 (571)
T PRK00293        536 PTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ  570 (571)
T ss_pred             CEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence            9999995 78763  44456678899999988753

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.95  E-value=1.5e-09  Score=99.81  Aligned_cols=66  Identities=21%  Similarity=0.300  Sum_probs=57.5

Q ss_pred             CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHHcCChHHHHhhhccC
Q psy16770         19 LDPYETLGVPRT--ASLQEIRKNYKRLVVEWHPDKNNDPT------AQEKFLQLTEAYNILSDAERRKQYDLFG   84 (554)
Q Consensus        19 ~d~y~~Lgv~~~--a~~~~ik~ay~~l~~~~hPd~~~~~~------~~~~~~~i~~Ay~~L~~~~~r~~yd~~~   84 (554)
                      .|||++||++++  .+..+++++||+|++++|||+.....      +.+.-..||+||.+|+||.+|+.|=...
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L   75 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIAL   75 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHh
Confidence            589999999996  89999999999999999999975432      3455788999999999999999997643

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.90  E-value=5.7e-09  Score=111.63  Aligned_cols=89  Identities=25%  Similarity=0.389  Sum_probs=74.1

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEE----------------------------EecCcHHHHHH
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV----------------------------HVHNEQGLARR  197 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~V----------------------------d~~~~~~l~~~  197 (554)
                      .+++++|.|||+||++|++..|.+++++++++..++.+..|                            +++.+..+++.
T Consensus        55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~  134 (521)
T PRK14018         55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS  134 (521)
T ss_pred             CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence            56899999999999999999999999999987445655544                            34556789999


Q ss_pred             hCCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        198 LGVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      |+|.+ +||++++ ++|+++....|..+.+.|..+|+..
T Consensus       135 fgV~g-iPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~  172 (521)
T PRK14018        135 LNISV-YPSWAIIGKDGDVQRIVKGSISEAQALALIRNP  172 (521)
T ss_pred             cCCCC-cCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence            99997 9999665 8899988777778989999999843

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.90  E-value=3.4e-09  Score=92.51  Aligned_cols=73  Identities=18%  Similarity=0.216  Sum_probs=58.9

Q ss_pred             CCCCcEEEEEEcccccccccchHH-HH--HHHHHhCCCCEEEEEEEecCcHHHHHH--------hCCcCCCCcceec-cC
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPI-FK--KLMDELSPLGVGFFTVHVHNEQGLARR--------LGVGSQLPQIALL-TD  212 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~-~~--~~a~~l~~~~v~~~~Vd~~~~~~l~~~--------~~v~~~~Pti~~~-~~  212 (554)
                      ..+++++|.||++||+.|+.+.+. |.  ++++.+.. ++.+++||.++.++++++        +|+.| +||++++ .+
T Consensus        13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G-~Pt~vfl~~~   90 (124)
T cd02955          13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREERPDVDKIYMNAAQAMTGQGG-WPLNVFLTPD   90 (124)
T ss_pred             HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC-CCEEEEECCC
Confidence            578899999999999999999873 33  56666655 489999999998888764        48998 9999999 67


Q ss_pred             CeEEEEe
Q psy16770        213 GRTSFFK  219 (554)
Q Consensus       213 g~~~~y~  219 (554)
                      |+++...
T Consensus        91 G~~~~~~   97 (124)
T cd02955          91 LKPFFGG   97 (124)
T ss_pred             CCEEeee
Confidence            8776443

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.87  E-value=1.1e-08  Score=95.17  Aligned_cols=88  Identities=22%  Similarity=0.463  Sum_probs=74.3

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------cHHHHHHhCCcCCC
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------EQGLARRLGVGSQL  204 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------~~~l~~~~~v~~~~  204 (554)
                      +++++|.||++||++|+...|.+.++++++.+.++.+..|+++.                      +..++++||+.+ +
T Consensus        61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-~  139 (173)
T PRK03147         61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP-L  139 (173)
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC-c
Confidence            56899999999999999999999999999987678999998753                      457899999997 9


Q ss_pred             Ccceec-cCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        205 PQIALL-TDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       205 Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      |+++++ .+|+.+....|..+.+++.+++.+.
T Consensus       140 P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        140 PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence            998888 5788775555666888999988754

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.87  E-value=1.1e-09  Score=94.91  Aligned_cols=72  Identities=19%  Similarity=0.422  Sum_probs=55.2

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-HHHHHhCCcC-CCCcceec-cCCeEEE
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-GLARRLGVGS-QLPQIALL-TDGRTSF  217 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-~l~~~~~v~~-~~Pti~~~-~~g~~~~  217 (554)
                      ..+++++|.|||+||++|+.+.|.+.+....... ...|..||.+.+. .+..++++.+ .+||++++ .+|+.+.
T Consensus        17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~   91 (117)
T cd02959          17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP   91 (117)
T ss_pred             HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence            4678999999999999999999999997765432 3456666666654 4567888873 39999999 5887643

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR02740 TraF-like TraF-like protein

Probab=98.85  E-value=1.1e-08  Score=101.94  Aligned_cols=88  Identities=20%  Similarity=0.343  Sum_probs=69.2

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------cHHHHHHhCCcCCCCcceeccC-C
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------EQGLARRLGVGSQLPQIALLTD-G  213 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------~~~l~~~~~v~~~~Pti~~~~~-g  213 (554)
                      .++++||.||++||++|+.+.|.+++++++++   +.+..|+.+.           +..+++++||.+ +||++++.+ |
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~-vPtl~Lv~~~~  240 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT-VPAVFLADPDP  240 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCCCccccCCcccCCHHHHHHcCCCc-CCeEEEEECCC
Confidence            46789999999999999999999999999874   5555555543           467899999997 999999964 5


Q ss_pred             eEEE-EeCCcccHHHHHHHHHHhCC
Q psy16770        214 RTSF-FKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       214 ~~~~-y~~g~~~~~~i~~fl~~~~~  237 (554)
                      +.+. ...|..+.+.|.+.+.....
T Consensus       241 ~~v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       241 NQFTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             CEEEEEEeCCCCHHHHHHHHHHHhc
Confidence            4433 33366688999888876654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.83  E-value=7.5e-09  Score=80.25  Aligned_cols=59  Identities=20%  Similarity=0.317  Sum_probs=52.0

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCe
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR  214 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~  214 (554)
                      ++.|+++||++|+.+.|.+++++....  ++.+..+|.++++++++++|+.+ +||+.+  +|+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~~~~~l~~~~~i~~-vPti~i--~~~   61 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAAEFPDLADEYGVMS-VPAIVI--NGK   61 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcccCHhHHHHcCCcc-cCEEEE--CCE
Confidence            678999999999999999999987542  59999999999999999999997 999866  454

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.82  E-value=7.1e-09  Score=94.27  Aligned_cols=55  Identities=29%  Similarity=0.382  Sum_probs=47.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCh------hHHHHHHHHHHHHHHcCChHHHHhhhccCC
Q psy16770         31 ASLQEIRKNYKRLVVEWHPDKNNDP------TAQEKFLQLTEAYNILSDAERRKQYDLFGT   85 (554)
Q Consensus        31 a~~~~ik~ay~~l~~~~hPd~~~~~------~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~   85 (554)
                      .+.++|+++||+|++++|||+..+.      .+.+.+..||+||++|+||.+|+.|+....
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~   63 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH   63 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence            4788999999999999999996532      256789999999999999999999997543

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.81  E-value=1e-08  Score=90.90  Aligned_cols=72  Identities=17%  Similarity=0.407  Sum_probs=58.8

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCc------------------------HHHHHHhCC
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNE------------------------QGLARRLGV  200 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~------------------------~~l~~~~~v  200 (554)
                      +++++|.||++||++|+...|.+.++.+++...  ++.+..|+.+.+                        ..++++|+|
T Consensus        18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   97 (131)
T cd03009          18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI   97 (131)
T ss_pred             CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence            568999999999999999999999999888643  577777766543                        467889999


Q ss_pred             cCCCCcceec-cCCeEEEEe
Q psy16770        201 GSQLPQIALL-TDGRTSFFK  219 (554)
Q Consensus       201 ~~~~Pti~~~-~~g~~~~y~  219 (554)
                      .+ +|+++++ ++|+++...
T Consensus        98 ~~-~P~~~lid~~G~i~~~~  116 (131)
T cd03009          98 EG-IPTLIILDADGEVVTTD  116 (131)
T ss_pred             CC-CCEEEEECCCCCEEccc
Confidence            97 9999999 478766543

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.81  E-value=3.4e-08  Score=86.29  Aligned_cols=104  Identities=12%  Similarity=0.154  Sum_probs=84.0

Q ss_pred             cccccccccccCCCCCCcEEEEEEcc--cccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCccee
Q psy16770        132 TTHWNFEKNYIPKSYTTPHLILFYSD--WCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIAL  209 (554)
Q Consensus       132 Lt~~~F~~~v~~~~~~~~~lV~Fya~--wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~  209 (554)
                      ++..+.+..+   ...+..++.|-.+  -++.+...+=.++++++++.+..+.+++||++.++.++.+|||.+ +||+++
T Consensus        22 ~~~~~~~~~~---~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~s-iPTLl~   97 (132)
T PRK11509         22 VSESRLDDWL---TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFR-FPATLV   97 (132)
T ss_pred             cccccHHHHH---hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCcc-CCEEEE
Confidence            3445566666   2344555544433  356777888899999999975359999999999999999999997 999999


Q ss_pred             ccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        210 LTDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       210 ~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      |++|+.+....|.++.+.+.+++.+.+..+
T Consensus        98 FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~  127 (132)
T PRK11509         98 FTGGNYRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_pred             EECCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence            999999988878889999999999887665

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.80  E-value=2.6e-08  Score=90.38  Aligned_cols=85  Identities=13%  Similarity=0.261  Sum_probs=61.8

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc------------HHHH-HHh---CCcCCCCcceec
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE------------QGLA-RRL---GVGSQLPQIALL  210 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~------------~~l~-~~~---~v~~~~Pti~~~  210 (554)
                      .+..+|+|||+||++|++..|.+++++++++   +.+..|+.+..            .... ..+   ++.+ +||.+++
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~---~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~-iPTt~LI  125 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG---LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVV-TPATFLV  125 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHcC---CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCC-CCeEEEE
Confidence            4456999999999999999999999999873   45555555532            3333 345   7887 9999999


Q ss_pred             -cCCeE-EEEeCCcccHHHHHHHHHHh
Q psy16770        211 -TDGRT-SFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       211 -~~g~~-~~y~~g~~~~~~i~~fl~~~  235 (554)
                       ++|.. ....-|..+.+.+.+.+.+.
T Consensus       126 D~~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       126 NVNTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             eCCCCEEEEEeecccCHHHHHHHHHHh
Confidence             55654 43344556888888877654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>KOG0914|consensus

Probab=98.79  E-value=1.8e-09  Score=99.29  Aligned_cols=79  Identities=22%  Similarity=0.367  Sum_probs=71.2

Q ss_pred             CCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcC-----CCCcceeccCCeEEE
Q psy16770        143 PKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGS-----QLPQIALLTDGRTSF  217 (554)
Q Consensus       143 ~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~-----~~Pti~~~~~g~~~~  217 (554)
                      ..+..+.|+|+|||-|.+.|.+..|.|.+++.++...+++||+||.+..++.+.+|+|+.     ..||+++|.+|+.+.
T Consensus       140 ~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~gkE~~  219 (265)
T KOG0914|consen  140 DRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKGKEVS  219 (265)
T ss_pred             ccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccchhhh
Confidence            446788999999999999999999999999999998789999999999999999999865     799999999998766


Q ss_pred             EeCC
Q psy16770        218 FKEP  221 (554)
Q Consensus       218 y~~g  221 (554)
                      +...
T Consensus       220 RrP~  223 (265)
T KOG0914|consen  220 RRPD  223 (265)
T ss_pred             cCcc
Confidence            5543

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=98.78  E-value=1.4e-08  Score=90.16  Aligned_cols=73  Identities=18%  Similarity=0.367  Sum_probs=59.1

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCc-------------------------HHHHHHh
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNE-------------------------QGLARRL  198 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~-------------------------~~l~~~~  198 (554)
                      .+++++|.||++||++|+...|.++++++.+++.  ++.+..|+.+.+                         ..+++.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            4578999999999999999999999999988753  577777776653                         2467789


Q ss_pred             CCcCCCCcceec-cCCeEEEEe
Q psy16770        199 GVGSQLPQIALL-TDGRTSFFK  219 (554)
Q Consensus       199 ~v~~~~Pti~~~-~~g~~~~y~  219 (554)
                      +|.+ +|+++++ ++|+++...
T Consensus        96 ~v~~-iPt~~lid~~G~iv~~~  116 (132)
T cd02964          96 KVEG-IPTLVVLKPDGDVVTTN  116 (132)
T ss_pred             CCCC-CCEEEEECCCCCEEchh
Confidence            9997 9999999 477766544

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>KOG0913|consensus

Probab=98.77  E-value=1.2e-09  Score=101.96  Aligned_cols=101  Identities=23%  Similarity=0.360  Sum_probs=91.4

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+..++.+|+....     ..-|+++|+||||+.|+.+.|+|+..|.--.+.+|.+++||.+.++.|.-+|-|.. .|||
T Consensus        25 ~~~~~~eenw~~~l-----~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vta-LptI   98 (248)
T KOG0913|consen   25 KLTRIDEENWKELL-----TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTA-LPTI   98 (248)
T ss_pred             eeEEecccchhhhh-----chHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEe-cceE
Confidence            57788999998876     34799999999999999999999999998888899999999999999999999996 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      .-.++|....|.|. |+..++++|+..+
T Consensus        99 YHvkDGeFrrysga-Rdk~dfisf~~~r  125 (248)
T KOG0913|consen   99 YHVKDGEFRRYSGA-RDKNDFISFEEHR  125 (248)
T ss_pred             EEeeccccccccCc-ccchhHHHHHHhh
Confidence            99999998888866 5889999999754

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.75  E-value=3e-08  Score=84.50  Aligned_cols=72  Identities=31%  Similarity=0.525  Sum_probs=63.6

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-----------------------HHHHHHhCCcCC
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-----------------------QGLARRLGVGSQ  203 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-----------------------~~l~~~~~v~~~  203 (554)
                      +++++|.||++||++|+...+.+.++.+.+...++.++.|+++.+                       ..+++.|++.+ 
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   97 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG-   97 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc-
Confidence            579999999999999999999999999999755799999999986                       78999999997 


Q ss_pred             CCcceec-cCCeEEEEe
Q psy16770        204 LPQIALL-TDGRTSFFK  219 (554)
Q Consensus       204 ~Pti~~~-~~g~~~~y~  219 (554)
                      +|+++++ .+|+.+..+
T Consensus        98 ~P~~~l~d~~g~v~~~~  114 (116)
T cd02966          98 LPTTFLIDRDGRIRARH  114 (116)
T ss_pred             cceEEEECCCCcEEEEe
Confidence            9999988 578766544

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.75  E-value=2.7e-08  Score=87.59  Aligned_cols=78  Identities=19%  Similarity=0.432  Sum_probs=60.8

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEE-----------------------ecCcHHHHHHhCCcCC
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVH-----------------------VHNEQGLARRLGVGSQ  203 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd-----------------------~~~~~~l~~~~~v~~~  203 (554)
                      +++++|.||++||++|+...|.++++++..   ++.+..|+                       ++.+..+++.|++.+ 
T Consensus        25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~-  100 (127)
T cd03010          25 GKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYG-  100 (127)
T ss_pred             CCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCC-
Confidence            568999999999999999999999998775   25555554                       455678899999997 


Q ss_pred             CCcceec-cCCeEEEEeCCcccHHHH
Q psy16770        204 LPQIALL-TDGRTSFFKEPSFSVQKM  228 (554)
Q Consensus       204 ~Pti~~~-~~g~~~~y~~g~~~~~~i  228 (554)
                      +|+.+++ ++|+......|..+.+.|
T Consensus       101 ~P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010         101 VPETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             CCeEEEECCCceEEEEEeccCChHhc
Confidence            9965555 799987766666665543

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.73  E-value=3.4e-08  Score=91.98  Aligned_cols=86  Identities=21%  Similarity=0.398  Sum_probs=66.8

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEE-----------------------ecCcHHHHHHhCCcC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVH-----------------------VHNEQGLARRLGVGS  202 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd-----------------------~~~~~~l~~~~~v~~  202 (554)
                      .+++++|.||++||++|++..|.++++++.    ++.+..|+                       ++.+..+++.|++.+
T Consensus        62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~  137 (173)
T TIGR00385        62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG  137 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence            467999999999999999999999888763    34444444                       344556788899997


Q ss_pred             CCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        203 QLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       203 ~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                       +|+.+++ ++|+......|..+.+++.+++.+.+
T Consensus       138 -~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~  171 (173)
T TIGR00385       138 -APETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM  171 (173)
T ss_pred             -CCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence             9966555 78998776667678899998887765

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=98.72  E-value=3.3e-08  Score=88.66  Aligned_cols=73  Identities=19%  Similarity=0.302  Sum_probs=58.9

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCC-------CCEEEEEEEecCc-------------------------HH
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-------LGVGFFTVHVHNE-------------------------QG  193 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~-------~~v~~~~Vd~~~~-------------------------~~  193 (554)
                      .+++++|.|||+||++|++..|.+.++.+.+++       .++.+..|+.+.+                         ..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            467999999999999999999999998877653       2578888876642                         25


Q ss_pred             HHHHhCCcCCCCcceec-cCCeEEEEe
Q psy16770        194 LARRLGVGSQLPQIALL-TDGRTSFFK  219 (554)
Q Consensus       194 l~~~~~v~~~~Pti~~~-~~g~~~~y~  219 (554)
                      ++++|++.+ +||++++ .+|+++...
T Consensus       104 l~~~y~v~~-iPt~vlId~~G~Vv~~~  129 (146)
T cd03008         104 LEAQFSVEE-LPTVVVLKPDGDVLAAN  129 (146)
T ss_pred             HHHHcCCCC-CCEEEEECCCCcEEeeC
Confidence            788999997 9999999 578776553

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.70  E-value=5.4e-08  Score=91.70  Aligned_cols=87  Identities=16%  Similarity=0.318  Sum_probs=67.4

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-----------------------HHHHHHhCCcC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-----------------------QGLARRLGVGS  202 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-----------------------~~l~~~~~v~~  202 (554)
                      .+++++|.||++||++|++..|.+.++.+.    ++.+..|+.+.+                       ..++..|||.+
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~  142 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG  142 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence            467999999999999999999999888652    567777775432                       23566889997


Q ss_pred             CCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        203 QLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       203 ~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                       +|+.+++ ++|++...+.|..+.+.+.+.++..+.
T Consensus       143 -~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~  177 (185)
T PRK15412        143 -APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE  177 (185)
T ss_pred             -CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence             9976666 789887777677788888888876653

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=98.70  E-value=4.5e-08  Score=81.41  Aligned_cols=67  Identities=28%  Similarity=0.674  Sum_probs=54.0

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhC-CCCEEEEEEEecCc-------------------------HHHHHHhCC
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELS-PLGVGFFTVHVHNE-------------------------QGLARRLGV  200 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~-~~~v~~~~Vd~~~~-------------------------~~l~~~~~v  200 (554)
                      +++++|.|||+||++|++..|.+.++.+.++ +.++.+..|.++.+                         ..+.+.|+|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            4689999999999999999999999999999 44699999988773                         257778888


Q ss_pred             cCCCCcceec-cCCe
Q psy16770        201 GSQLPQIALL-TDGR  214 (554)
Q Consensus       201 ~~~~Pti~~~-~~g~  214 (554)
                      .+ +|+++++ ++|+
T Consensus        81 ~~-iP~~~lld~~G~   94 (95)
T PF13905_consen   81 NG-IPTLVLLDPDGK   94 (95)
T ss_dssp             TS-SSEEEEEETTSB
T ss_pred             Cc-CCEEEEECCCCC
Confidence            87 9988888 5564

...

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.70  E-value=7.2e-08  Score=79.18  Aligned_cols=76  Identities=14%  Similarity=0.138  Sum_probs=62.8

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ  226 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~  226 (554)
                      +..-+..|+++||++|....+.++++++...  ++.+..+|.++.++++.+|||.+ +||+++  +|+... .| ..+.+
T Consensus        12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~~e~a~~~~V~~-vPt~vi--dG~~~~-~G-~~~~~   84 (89)
T cd03026          12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALFQDEVEERGIMS-VPAIFL--NGELFG-FG-RMTLE   84 (89)
T ss_pred             CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhCHHHHHHcCCcc-CCEEEE--CCEEEE-eC-CCCHH
Confidence            4567888999999999999999999998764  48999999999999999999997 999965  787544 34 44656


Q ss_pred             HHH
Q psy16770        227 KMV  229 (554)
Q Consensus       227 ~i~  229 (554)
                      +++
T Consensus        85 e~~   87 (89)
T cd03026          85 EIL   87 (89)
T ss_pred             HHh
Confidence            553

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.61  E-value=1.5e-07  Score=82.14  Aligned_cols=81  Identities=21%  Similarity=0.377  Sum_probs=61.0

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEE---------------------EecCcHHHHHHhCCcCCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---------------------HVHNEQGLARRLGVGSQL  204 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~V---------------------d~~~~~~l~~~~~v~~~~  204 (554)
                      .+++++|.||++||++|+.+.|.+.++++.+.   +....+                     -++.+..++++|+|.+ +
T Consensus        19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~-~   94 (123)
T cd03011          19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSV-T   94 (123)
T ss_pred             CCCEEEEEEECCcChhhhhhChHHHHHHhhCC---EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCc-c
Confidence            34799999999999999999999999887743   221212                     2245678999999997 9


Q ss_pred             CcceeccCCeEEEEeCCcccHHHHHH
Q psy16770        205 PQIALLTDGRTSFFKEPSFSVQKMVE  230 (554)
Q Consensus       205 Pti~~~~~g~~~~y~~g~~~~~~i~~  230 (554)
                      |+++++.++.......|..+.++|.+
T Consensus        95 P~~~vid~~gi~~~~~g~~~~~~~~~  120 (123)
T cd03011          95 PAIVIVDPGGIVFVTTGVTSEWGLRL  120 (123)
T ss_pred             cEEEEEcCCCeEEEEeccCCHHHHHh
Confidence            99999965556555556667777754

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.58  E-value=1.6e-07  Score=110.23  Aligned_cols=90  Identities=20%  Similarity=0.293  Sum_probs=75.6

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe---------------------------cCcHHHHHHh
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV---------------------------HNEQGLARRL  198 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~---------------------------~~~~~l~~~~  198 (554)
                      .+++++|.|||+||++|++..|.++++++++++.++.+..|.+                           +.+..+.++|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            4689999999999999999999999999999876777777742                           2245678899


Q ss_pred             CCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        199 GVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       199 ~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +|.+ +|+++++ ++|+++....|....+.+.+++...+
T Consensus       499 ~V~~-iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l  536 (1057)
T PLN02919        499 GVSS-WPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL  536 (1057)
T ss_pred             CCCc-cceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence            9997 9999999 79998777767667788888888764

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=8.2e-08  Score=90.93  Aligned_cols=71  Identities=31%  Similarity=0.409  Sum_probs=63.1

Q ss_pred             cCCCCCcccccCCCC---CCCHHHHHHHHHHHHHHhCCCCCC---ChhHHHHHHHHHHHHHHcCChHHHHhhhccCC
Q psy16770         15 CAVSLDPYETLGVPR---TASLQEIRKNYKRLVVEWHPDKNN---DPTAQEKFLQLTEAYNILSDAERRKQYDLFGT   85 (554)
Q Consensus        15 ~~~~~d~y~~Lgv~~---~a~~~~ik~ay~~l~~~~hPd~~~---~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~   85 (554)
                      .+...|.|.+||++.   .+++.+|.+|.++.+.+||||+..   +.+..+.|..|+.||++|+|+.+|..||.-..
T Consensus        39 ~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df  115 (379)
T COG5269          39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF  115 (379)
T ss_pred             hhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence            466789999999987   789999999999999999999963   45678999999999999999999999997443

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.51  E-value=3.7e-07  Score=78.54  Aligned_cols=59  Identities=17%  Similarity=0.415  Sum_probs=44.2

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEE---EecCcHHHHHHhCCcCCCCcc
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV---HVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~V---d~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +++++|.||++||++|+...|.++++++.+.+ ++.+..+   +.+....+++++++.+ +|++
T Consensus        21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~-~p~~   82 (114)
T cd02967          21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEA-FPYV   82 (114)
T ss_pred             CCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCC-CcEE
Confidence            57999999999999999999999999888765 4666655   2223445666666664 6654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.50  E-value=4.4e-07  Score=79.83  Aligned_cols=74  Identities=22%  Similarity=0.345  Sum_probs=59.8

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec---------------------------CcHHHHHHhC
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH---------------------------NEQGLARRLG  199 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~---------------------------~~~~l~~~~~  199 (554)
                      +++++|.||+.||+.|.+..|.++++.++++..++.+..|+..                           .+..+++.|+
T Consensus        23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~  102 (126)
T cd03012          23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYG  102 (126)
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhC
Confidence            4689999999999999999999999999998767888888652                           1235677889


Q ss_pred             CcCCCCcceec-cCCeEEEEeCC
Q psy16770        200 VGSQLPQIALL-TDGRTSFFKEP  221 (554)
Q Consensus       200 v~~~~Pti~~~-~~g~~~~y~~g  221 (554)
                      +.+ +|+.+++ ++|++.....|
T Consensus       103 v~~-~P~~~vid~~G~v~~~~~G  124 (126)
T cd03012         103 NQY-WPALYLIDPTGNVRHVHFG  124 (126)
T ss_pred             CCc-CCeEEEECCCCcEEEEEec
Confidence            987 9998888 57877655443

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.48  E-value=6.4e-07  Score=82.85  Aligned_cols=83  Identities=16%  Similarity=0.335  Sum_probs=64.2

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-------------HHHHHHhCC--cCCCCcceec-cCCe
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-------------QGLARRLGV--GSQLPQIALL-TDGR  214 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-------------~~l~~~~~v--~~~~Pti~~~-~~g~  214 (554)
                      +|.||++||++|++..|.++++++++   ++.+..|+.+..             ..+...||+  .+ +|+..++ ++|+
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~-iPttfLId~~G~  148 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVA-TPTTFLVNVNTL  148 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCC-CCeEEEEeCCCc
Confidence            77799999999999999999999997   356666665532             346778995  67 9999999 7888


Q ss_pred             EE--EEeCCcccHHHHHHHHHHhCCC
Q psy16770        215 TS--FFKEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       215 ~~--~y~~g~~~~~~i~~fl~~~~~~  238 (554)
                      ..  .+.| ..+.+.+.+.+.+.+.-
T Consensus       149 i~~~~~~G-~~~~~~L~~~I~~ll~~  173 (181)
T PRK13728        149 EALPLLQG-ATDAAGFMARMDTVLQM  173 (181)
T ss_pred             EEEEEEEC-CCCHHHHHHHHHHHHhh
Confidence            74  3554 56888888888776643

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.45  E-value=8.9e-07  Score=76.44  Aligned_cols=89  Identities=12%  Similarity=0.172  Sum_probs=71.7

Q ss_pred             CCCCcEEEEEEcccccccccchH-HH--HHHHHHhCCCCEEEEEEEec--CcHHHHHHhCCcCCCCcceec-c-CCeEEE
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEP-IF--KKLMDELSPLGVGFFTVHVH--NEQGLARRLGVGSQLPQIALL-T-DGRTSF  217 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p-~~--~~~a~~l~~~~v~~~~Vd~~--~~~~l~~~~~v~~~~Pti~~~-~-~g~~~~  217 (554)
                      ..+++++|.|+++||+.|+.+.. .|  .++.+.++. ...+.++|.+  +...++..|++.+ +|++.++ . +|+.+.
T Consensus        15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~~~~~~~~-~P~~~~i~~~~g~~l~   92 (114)
T cd02958          15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFLQSYKVDK-YPHIAIIDPRTGEVLK   92 (114)
T ss_pred             hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHHHHhCccC-CCeEEEEeCccCcEeE
Confidence            56889999999999999999875 34  345566655 4778888887  4568999999997 9999999 3 688888


Q ss_pred             EeCCcccHHHHHHHHHHh
Q psy16770        218 FKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       218 y~~g~~~~~~i~~fl~~~  235 (554)
                      ...|..+++.+.+-+++.
T Consensus        93 ~~~G~~~~~~f~~~L~~~  110 (114)
T cd02958          93 VWSGNITPEDLLSQLIEF  110 (114)
T ss_pred             EEcCCCCHHHHHHHHHHH
Confidence            888888999988887764

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.43  E-value=6.5e-07  Score=85.22  Aligned_cols=91  Identities=12%  Similarity=0.119  Sum_probs=70.1

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------cHHHHHHhCCcCCCC----------
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------EQGLARRLGVGSQLP----------  205 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------~~~l~~~~~v~~~~P----------  205 (554)
                      ++++||.|||+||+.|.+..|.++++.+++++.|+.+..|+|+.           ....++++++.  ||          
T Consensus        39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~--fpvl~d~~v~g~  116 (199)
T PTZ00056         39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK--YNFFEPIEVNGE  116 (199)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCC--ceeeeeeeccCC
Confidence            56999999999999999999999999999988789999998741           23456666652  33          


Q ss_pred             ------------------------------cceec-cCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        206 ------------------------------QIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       206 ------------------------------ti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                                                    +..++ ++|+++.+++|..+.+.+.+.+.+.+..+
T Consensus       117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~  181 (199)
T PTZ00056        117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVK  181 (199)
T ss_pred             ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence                                          22233 78988888888778788888887665433

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.36  E-value=1.3e-06  Score=78.75  Aligned_cols=78  Identities=24%  Similarity=0.519  Sum_probs=64.6

Q ss_pred             CCCcEEEEEEcc-cccccccchHHHHHHHHHhCCCCEEEEEEEecCc---------------------HHHHHHhCCc--
Q psy16770        146 YTTPHLILFYSD-WCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE---------------------QGLARRLGVG--  201 (554)
Q Consensus       146 ~~~~~lV~Fya~-wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~---------------------~~l~~~~~v~--  201 (554)
                      .+++++|.||+. ||++|....|.+.++++.++..++.+..|..+.+                     ..+.+++++.  
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  106 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM  106 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence            467899999999 9999999999999999988776788888877653                     3688899988  


Q ss_pred             -------CCCCcceec-cCCeEEEEeCCccc
Q psy16770        202 -------SQLPQIALL-TDGRTSFFKEPSFS  224 (554)
Q Consensus       202 -------~~~Pti~~~-~~g~~~~y~~g~~~  224 (554)
                             + +|+++++ ++|++.....|...
T Consensus       107 ~~~~~~~~-~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen  107 EDPGNGFG-IPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             CCTTTTSS-SSEEEEEETTSBEEEEEESSBT
T ss_pred             cccccCCe-ecEEEEEECCCEEEEEEeCCCC
Confidence                   8 9998777 88988766655433

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.30  E-value=3.3e-06  Score=82.01  Aligned_cols=90  Identities=13%  Similarity=0.070  Sum_probs=66.3

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------cHHHH-HHhCCc------------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------EQGLA-RRLGVG------------  201 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------~~~l~-~~~~v~------------  201 (554)
                      .+++++|.||++||+.|....|.+.++.+++++.|+.+..|+|+.           ..+.+ +++++.            
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~  177 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP  177 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence            357999999999999999999999999999988789999999841           12232 344432            


Q ss_pred             ----------------------CCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        202 ----------------------SQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       202 ----------------------~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                                            + .|+..++ ++|+++..+.|..+.+.|...|++.+
T Consensus       178 ~~~~~y~~l~~~~~~~~g~~i~~-~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL  234 (236)
T PLN02399        178 STAPVYQFLKSNAGGFLGDLIKW-NFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL  234 (236)
T ss_pred             hhhHHHHHHHHhcCCccCCcccc-CceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence                                  1 2444445 67877777667667777877777654

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.30  E-value=9.6e-07  Score=93.89  Aligned_cols=98  Identities=19%  Similarity=0.399  Sum_probs=74.2

Q ss_pred             cccccccCCCCCCcEEEEEEcccccccccchHH-HHHHHHHhCCCCEEEEEEEecCc----HHHHHHhCCcCCCCcceec
Q psy16770        136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPI-FKKLMDELSPLGVGFFTVHVHNE----QGLARRLGVGSQLPQIALL  210 (554)
Q Consensus       136 ~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~-~~~~a~~l~~~~v~~~~Vd~~~~----~~l~~~~~v~~~~Pti~~~  210 (554)
                      ..+..+.+ ..++|++++|||+||-.||.+++. +.+.....+-.++...++|.|++    .++-+++|+-| .|++++|
T Consensus       464 ~L~~~la~-~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G-~P~~~ff  541 (569)
T COG4232         464 ELDQALAE-AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG-VPTYLFF  541 (569)
T ss_pred             HHHHHHHh-CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC-CCEEEEE
Confidence            44444432 334699999999999999998874 43333333333699999999984    57889999998 9999999


Q ss_pred             c-CCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        211 T-DGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       211 ~-~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      . +|+...--.|..+++.+.+++++.
T Consensus       542 ~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         542 GPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             CCCCCcCcCCcceecHHHHHHHHHHh
Confidence            6 676554467888999999999875

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.23  E-value=3.2e-06  Score=71.69  Aligned_cols=70  Identities=30%  Similarity=0.610  Sum_probs=61.8

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-CcHHHHHHhC--CcCCCCcceeccCCeEEEE
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-NEQGLARRLG--VGSQLPQIALLTDGRTSFF  218 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-~~~~l~~~~~--v~~~~Pti~~~~~g~~~~y  218 (554)
                      ++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. .++.+...++  +.. +|++.++.+|.....
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~  104 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRS-IPTLLLFKDGKEVDR  104 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhcc-CCeEEEEeCcchhhh
Confidence            66899999999999999999999999999986 5899999997 8999999999  896 999998877765433

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.23  E-value=3.7e-06  Score=65.78  Aligned_cols=68  Identities=16%  Similarity=0.419  Sum_probs=52.2

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH----HHHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG----LARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ  226 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~----l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~  226 (554)
                      +..|+++||++|+++.+.+++       .++.+..+|.+.++.    +++.+|+.+ +|++.+.  |+.   ..|. +.+
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~~~~~-vP~~~~~--~~~---~~g~-~~~   67 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVEKDSAAREEVLKVLGQRG-VPVIVIG--HKI---IVGF-DPE   67 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEeccCCHHHHHHHHHHhCCCc-ccEEEEC--CEE---EeeC-CHH
Confidence            467999999999998887764       258889999988654    567799997 9999885  544   3343 668


Q ss_pred             HHHHHH
Q psy16770        227 KMVEFF  232 (554)
Q Consensus       227 ~i~~fl  232 (554)
                      .|.+++
T Consensus        68 ~i~~~i   73 (74)
T TIGR02196        68 KLDQLL   73 (74)
T ss_pred             HHHHHh
Confidence            887776

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.23  E-value=7.2e-06  Score=74.68  Aligned_cols=42  Identities=17%  Similarity=0.129  Sum_probs=38.8

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV  188 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~  188 (554)
                      +++++|.||++||+.|++..|.+.++.++++..|+.+..|+|
T Consensus        22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~   63 (153)
T TIGR02540        22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC   63 (153)
T ss_pred             CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence            467899999999999999999999999999877899999997

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>KOG0568|consensus

Probab=98.22  E-value=7.9e-07  Score=82.39  Aligned_cols=57  Identities=26%  Similarity=0.592  Sum_probs=52.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHH-HcCCh
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYN-ILSDA   74 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~-~L~~~   74 (554)
                      -..+|.+|||..+++..++|.||..|++++|||...+....++|+.|.+||. +|+.-
T Consensus        46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999988888899999999998 77654

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.20  E-value=6.3e-07  Score=72.48  Aligned_cols=64  Identities=23%  Similarity=0.386  Sum_probs=48.6

Q ss_pred             CCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceecc
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLT  211 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~  211 (554)
                      ..+++++|.|+++||+.|+.+...+   .++.+.+.. ++.+..||.+.........+ .+ +|+++++.
T Consensus        15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~~~~~~~~~~~-~~-~P~~~~ld   81 (82)
T PF13899_consen   15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVDDEDPNAQFDR-QG-YPTFFFLD   81 (82)
T ss_dssp             HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETTTHHHHHHHHH-CS-SSEEEEEE
T ss_pred             HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcCCCChhHHhCC-cc-CCEEEEeC
Confidence            4688999999999999999988765   344443443 58999999988665443333 87 99998863

...

>PLN02412 probable glutathione peroxidase

Probab=98.18  E-value=9.6e-06  Score=75.02  Aligned_cols=43  Identities=12%  Similarity=0.065  Sum_probs=39.6

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH  189 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~  189 (554)
                      ++++||.||++||+.|++..|.+.++.+++++.|+.+..|+++
T Consensus        29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~   71 (167)
T PLN02412         29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN   71 (167)
T ss_pred             CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence            4689999999999999999999999999999878999999874

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.14  E-value=2.2e-05  Score=67.42  Aligned_cols=100  Identities=13%  Similarity=0.186  Sum_probs=70.2

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEec--CC---chhHHHHHHhh-ccCCceEEEEEEccC---CCChhHHhHhCCC-
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQR--SL---PVRLRYLINAF-KHRTTIVFGVIVYDQ---EDSSSVFQRFKVP-  310 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~--~~---~~~~~~~~~a~-~~~~~v~Fg~v~~~~---~~~~~l~~k~~i~-  310 (554)
                      +..++++++++++.    .++.+++-|..  .-   .+....++... .-.+.+.+|.|+|+.   ..+.+++++|+|+ 
T Consensus         3 ~v~L~~~nF~~~v~----~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~   78 (116)
T cd03007           3 CVDLDTVTFYKVIP----KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDK   78 (116)
T ss_pred             eeECChhhHHHHHh----cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCc
Confidence            35678999999995    35555555543  11   23444454443 224469999999953   2568899999998 


Q ss_pred             -CCCceEEEEeCCC-CCCCceeecCC-CChhHHHhHHhcC
Q psy16770        311 -GDKDSLLIFKEDK-DRPSASITMNS-IPVPTLQDITDNN  347 (554)
Q Consensus       311 -~~~Ptlvvfk~~~-~~~~~~i~~~~-~~~~~l~~fi~~~  347 (554)
                       + +|||.+|+++. ..+  ..|.+. .+.+.|.+||+.+
T Consensus        79 ~g-yPTl~lF~~g~~~~~--~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          79 ES-YPVIYLFHGGDFENP--VPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CC-CCEEEEEeCCCcCCC--ccCCCCcccHHHHHHHHHhc
Confidence             6 99999999763 344  457785 8999999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>smart00594 UAS UAS domain

Probab=98.13  E-value=8.8e-06  Score=71.13  Aligned_cols=86  Identities=13%  Similarity=0.107  Sum_probs=64.9

Q ss_pred             CCCCcEEEEEEcccccccccchHH-HH--HHHHHhCCCCEEEEEEEecC--cHHHHHHhCCcCCCCcceec-cCC-----
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPI-FK--KLMDELSPLGVGFFTVHVHN--EQGLARRLGVGSQLPQIALL-TDG-----  213 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~-~~--~~a~~l~~~~v~~~~Vd~~~--~~~l~~~~~v~~~~Pti~~~-~~g-----  213 (554)
                      ..+++++|.|+++||+.|+.+... |.  ++.+.++. .+.+..+|.+.  ...++++|++.+ +|++.++ .+|     
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~~~~~~~~-~P~~~~l~~~~g~~~~  102 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVSQFYKLDS-FPYVAIVDPRTGQRVI  102 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHHHhcCcCC-CCEEEEEecCCCceeE
Confidence            467899999999999999997653 32  34555555 47887888765  567999999997 9999998 444     


Q ss_pred             eEEEEeCCcccHHHHHHHH
Q psy16770        214 RTSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       214 ~~~~y~~g~~~~~~i~~fl  232 (554)
                      ..+....|..+.++++.++
T Consensus       103 ~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594      103 EWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EEeccccCCCCHHHHHHhh
Confidence            2345556777888888775

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.12  E-value=7.8e-06  Score=74.37  Aligned_cols=42  Identities=12%  Similarity=0.064  Sum_probs=38.1

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH  189 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~  189 (554)
                      +++++|.||+.||+ |....|.++++.+++++.++.+..|+++
T Consensus        22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~   63 (152)
T cd00340          22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN   63 (152)
T ss_pred             CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            57899999999999 9999999999999998778999988764

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.12  E-value=2.4e-06  Score=74.70  Aligned_cols=69  Identities=13%  Similarity=0.213  Sum_probs=45.7

Q ss_pred             CCCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEecCc-HHHHHHhCCcCCCCcceec-cCCeEE
Q psy16770        144 KSYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVHNE-QGLARRLGVGSQLPQIALL-TDGRTS  216 (554)
Q Consensus       144 ~~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~~~-~~l~~~~~v~~~~Pti~~~-~~g~~~  216 (554)
                      +..+++++|.||++||++|+.+....   .++++.++. .+.+..++.+.. ..+. ..| .+ +||++++ .+|+++
T Consensus        20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~-~~g-~~-vPtivFld~~g~vi   93 (130)
T cd02960          20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLS-PDG-QY-VPRIMFVDPSLTVR   93 (130)
T ss_pred             HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcC-ccC-cc-cCeEEEECCCCCCc
Confidence            35788999999999999999988753   234444533 355556665422 1121 234 66 9999999 566543

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.10  E-value=1.6e-05  Score=75.16  Aligned_cols=84  Identities=19%  Similarity=0.318  Sum_probs=59.0

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec--------------------CcHHHHHHhCCcCCCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH--------------------NEQGLARRLGVGSQLP  205 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~--------------------~~~~l~~~~~v~~~~P  205 (554)
                      .+++++|.||++||+.|+...|.+.++.+...   +.+..|..+                    ...++++.|++.+ .|
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~---~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~-~P  148 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE---TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGK-IP  148 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC---CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCc-cc
Confidence            45789999999999999999999999887642   333333311                    1457788999997 99


Q ss_pred             cceec-cCCeEEEEeCCcccHHHHHHHHHH
Q psy16770        206 QIALL-TDGRTSFFKEPSFSVQKMVEFFRL  234 (554)
Q Consensus       206 ti~~~-~~g~~~~y~~g~~~~~~i~~fl~~  234 (554)
                      +.+++ ++|+... .+.....+.+.+.+..
T Consensus       149 ~~~lID~~G~I~~-~g~~~~~~~le~ll~~  177 (189)
T TIGR02661       149 YGVLLDQDGKIRA-KGLTNTREHLESLLEA  177 (189)
T ss_pred             eEEEECCCCeEEE-ccCCCCHHHHHHHHHH
Confidence            87776 6787654 3443354666665543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.09  E-value=2.2e-05  Score=72.85  Aligned_cols=93  Identities=18%  Similarity=0.340  Sum_probs=70.7

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------------------------cHHHHH
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------------------------EQGLAR  196 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------------------------~~~l~~  196 (554)
                      .++++||.||++||+.|....|.+.++.+++++.++.+..|.++.                             +..+++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            356899999999999999999999999999986678988887653                             235677


Q ss_pred             HhCCcCCCCcceec-cCCeEEEEe------C---CcccHHHHHHHHHHhCCCC
Q psy16770        197 RLGVGSQLPQIALL-TDGRTSFFK------E---PSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       197 ~~~v~~~~Pti~~~-~~g~~~~y~------~---g~~~~~~i~~fl~~~~~~~  239 (554)
                      .|++.. .|+++++ ++|+++...      +   +..+...+.+-|...+...
T Consensus       104 ~~~v~~-~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~  155 (171)
T cd02969         104 AYGAAC-TPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK  155 (171)
T ss_pred             HcCCCc-CCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence            899997 9999888 577665331      0   1234577878777766544

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=98.07  E-value=1.9e-05  Score=67.67  Aligned_cols=103  Identities=14%  Similarity=0.096  Sum_probs=68.2

Q ss_pred             ccccchhhhhhcCCCCceEEEEEcC----CCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCcc
Q psy16770        353 PRISSQSMLDAVCPVKKLCVVLFSE----DSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSE  428 (554)
Q Consensus       353 ~~lt~~~~~~~~c~~~~lcvvl~~~----~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~  428 (554)
                      .++|.++...-.  ..+++++++..    ..++.+++++.++++|++  ++++++.|+|+|.+.....++.|    |..+
T Consensus         2 ~~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~--fk~gki~Fv~~D~~~~~~~l~~f----gl~~   73 (111)
T cd03073           2 GHRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKD--FPDRKLNFAVADKEDFSHELEEF----GLDF   73 (111)
T ss_pred             CeeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHH--CcCCeEEEEEEcHHHHHHHHHHc----CCCc
Confidence            345555443322  34566666533    344567899999999999  98334999999998766677766    2111


Q ss_pred             ccce--EEEEEEecCCCeeEEEecCCCCCcccccch-hhHHHHHHHHhhh
Q psy16770        429 ISLH--IAAMWRMDYKKIKYGWLLGDAVDDWKDYNT-TKDRLDAGLRSLV  475 (554)
Q Consensus       429 ~~~~--~~~v~~~~~~~~ky~~~~~~~~~~~~~~~~-t~e~l~~fl~~~~  475 (554)
                        .+  .|++...+..+.||. +++         +. |.++|.+|+++++
T Consensus        74 --~~~~~P~~~i~~~~~~KY~-~~~---------~~~t~e~i~~F~~~f~  111 (111)
T cd03073          74 --SGGEKPVVAIRTAKGKKYV-MEE---------EFSDVDALEEFLEDFF  111 (111)
T ss_pred             --ccCCCCEEEEEeCCCCccC-CCc---------ccCCHHHHHHHHHHhC
Confidence              13  565555555557996 444         35 8899999999864

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.07  E-value=2.3e-05  Score=67.96  Aligned_cols=96  Identities=18%  Similarity=0.226  Sum_probs=70.3

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCc---------hhHHHHHHhhcc--CCceEEEEEEccCCCChhHHhHhCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLP---------VRLRYLINAFKH--RTTIVFGVIVYDQEDSSSVFQRFKV  309 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~---------~~~~~~~~a~~~--~~~v~Fg~v~~~~~~~~~l~~k~~i  309 (554)
                      +..+|+++|++.+.+   ...+++++|-.---         ........|+.+  .+.+.|+.+|++  .+.+++++|+|
T Consensus        11 v~~lt~~nF~~~v~~---~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d--~~~~La~~~~I   85 (120)
T cd03065          11 VIDLNEKNYKQVLKK---YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSK--KDAKVAKKLGL   85 (120)
T ss_pred             eeeCChhhHHHHHHh---CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCC--CCHHHHHHcCC
Confidence            566789999998864   56677777732221         111113334444  677999999998  78999999999


Q ss_pred             CCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        310 PGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       310 ~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      .+ .||+++|+++.  +. . +.|..+...|.+||+.
T Consensus        86 ~~-iPTl~lfk~G~--~v-~-~~G~~~~~~l~~~l~~  117 (120)
T cd03065          86 DE-EDSIYVFKDDE--VI-E-YDGEFAADTLVEFLLD  117 (120)
T ss_pred             cc-ccEEEEEECCE--EE-E-eeCCCCHHHHHHHHHH
Confidence            97 99999999754  32 2 6788899999999873

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.05  E-value=2.6e-05  Score=65.34  Aligned_cols=97  Identities=13%  Similarity=0.263  Sum_probs=72.3

Q ss_pred             ccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        242 VPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      ..+|++++++.+..   .+++++++|....-+......     .+..+.+.+.|+.++++  .+..++++|+|.+ .|++
T Consensus         2 ~~lt~~~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~-~Pt~   75 (103)
T PF00085_consen    2 IVLTDENFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKS-VPTI   75 (103)
T ss_dssp             EEESTTTHHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSS-SSEE
T ss_pred             EECCHHHHHHHHHc---cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhh--ccchhhhccCCCC-CCEE
Confidence            45788999999963   367777777655444333222     22245559999999998  6889999999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      ++|+++...   ..+.+.++.+.|.+||+.|
T Consensus        76 ~~~~~g~~~---~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   76 IFFKNGKEV---KRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             EEEETTEEE---EEEESSSSHHHHHHHHHHH
T ss_pred             EEEECCcEE---EEEECCCCHHHHHHHHHcC
Confidence            999986543   2567888999999999864

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.02  E-value=1.9e-05  Score=73.55  Aligned_cols=80  Identities=10%  Similarity=0.098  Sum_probs=59.9

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEE------EEEEecC-----------------------------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGF------FTVHVHN-----------------------------  190 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~------~~Vd~~~-----------------------------  190 (554)
                      .+++++|+|||.||+.|+...|.++++++.    |+.+      ..||.++                             
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~  133 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD  133 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHc----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence            478999999999999999999999988543    2333      4444432                             


Q ss_pred             cHHHHHHhCCcCCCCcc-eec-cCCeEEEEeCCcccHHHHHH
Q psy16770        191 EQGLARRLGVGSQLPQI-ALL-TDGRTSFFKEPSFSVQKMVE  230 (554)
Q Consensus       191 ~~~l~~~~~v~~~~Pti-~~~-~~g~~~~y~~g~~~~~~i~~  230 (554)
                      +..++..||+.+ +|+. +++ ++|++.....|..+.+++.+
T Consensus       134 ~g~v~~~~gv~~-~P~T~fVIDk~GkVv~~~~G~l~~ee~e~  174 (184)
T TIGR01626       134 KGAVKNAWQLNS-EDSAIIVLDKTGKVKFVKEGALSDSDIQT  174 (184)
T ss_pred             cchHHHhcCCCC-CCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence            335677899997 9877 455 88998877777767777655

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.01  E-value=1.1e-05  Score=60.23  Aligned_cols=60  Identities=37%  Similarity=0.832  Sum_probs=50.8

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHH---HhCCcCCCCcceeccCC
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLAR---RLGVGSQLPQIALLTDG  213 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~---~~~v~~~~Pti~~~~~g  213 (554)
                      ++.|+++||++|.++.+.+.+. ..... ++.+..+|++.....+.   .+++.+ +|+++++..|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNK-GVKFEAVDVDEDPALEKELKRYGVGG-VPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCC-CcEEEEEEcCCChHHhhHHHhCCCcc-ccEEEEEeCC
Confidence            4789999999999999999988 33333 69999999999887765   889997 9999998776

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.97  E-value=1.5e-05  Score=63.08  Aligned_cols=70  Identities=23%  Similarity=0.460  Sum_probs=50.0

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHh-----CCcCCCCcceeccCCeEEEEeCCcccH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL-----GVGSQLPQIALLTDGRTSFFKEPSFSV  225 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~-----~v~~~~Pti~~~~~g~~~~y~~g~~~~  225 (554)
                      ++.|+++||++|+++.+.+++.       ++.+-.+|.+++......+     ++.+ +|++ ++.+|....   . .+.
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~~~~~~~~~~~~~~~~~-vP~i-~~~~g~~l~---~-~~~   68 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIEEDEGAADRVVSVNNGNMT-VPTV-KFADGSFLT---N-PSA   68 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCcCCHhHHHHHHHHhCCCce-eCEE-EECCCeEec---C-CCH
Confidence            5679999999999998877643       4566778988877666653     8886 9997 467775433   2 244


Q ss_pred             HHHHHHHH
Q psy16770        226 QKMVEFFR  233 (554)
Q Consensus       226 ~~i~~fl~  233 (554)
                      .++.+.++
T Consensus        69 ~~~~~~l~   76 (77)
T TIGR02200        69 AQVKAKLQ   76 (77)
T ss_pred             HHHHHHhh
Confidence            66666553

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.96  E-value=5.7e-05  Score=63.72  Aligned_cols=93  Identities=14%  Similarity=0.138  Sum_probs=70.7

Q ss_pred             CCcccHHHHHh-hhhcCCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeC
Q psy16770        244 LSATNVDAFLD-NWREDNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKE  321 (554)
Q Consensus       244 ~t~~~~~~fl~-~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~  321 (554)
                      .+.+++++|+. .   ...+++++|.+..++....+..++ .+++++.|+++     .++++.+++++.  .|+++++++
T Consensus         6 ~~~~~~e~~~~~~---~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~-----~~~~~~~~~~~~--~~~i~l~~~   75 (102)
T cd03066           6 NSERELQAFENIE---DDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFAT-----FDSKVAKKLGLK--MNEVDFYEP   75 (102)
T ss_pred             CCHHHHHHHhccc---CCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEE-----CcHHHHHHcCCC--CCcEEEeCC
Confidence            36678999995 3   366667788776777666666665 67799999999     688899999886  689999987


Q ss_pred             CCCCCCceee-cCCCChhHHHhHHhcCC
Q psy16770        322 DKDRPSASIT-MNSIPVPTLQDITDNNP  348 (554)
Q Consensus       322 ~~~~~~~~i~-~~~~~~~~l~~fi~~~~  348 (554)
                      ..+..  ..+ .+.++...|.+||..++
T Consensus        76 ~~e~~--~~y~~g~~~~~~l~~fi~~~~  101 (102)
T cd03066          76 FMEEP--VTIPDKPYSEEELVDFVEEHK  101 (102)
T ss_pred             CCCCC--cccCCCCCCHHHHHHHHHHhc
Confidence            55544  235 66788889999998774

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>KOG0911|consensus

Probab=97.94  E-value=1.7e-05  Score=74.38  Aligned_cols=164  Identities=11%  Similarity=0.147  Sum_probs=101.4

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccH
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSV  225 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~  225 (554)
                      ..+..++.||++||..|+++...++.+++..+  .+.+++++++..+.+|+.+.+.. .|+.+++..|+.+....+... 
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--~~~~~k~~a~~~~eis~~~~v~~-vp~~~~~~~~~~v~~l~~~~~-   91 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--NAQFLKLEAEEFPEISNLIAVEA-VPYFVFFFLGEKVDRLSGADP-   91 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--hheeeeehhhhhhHHHHHHHHhc-CceeeeeecchhhhhhhccCc-
Confidence            56788999999999999999999999999883  58999999999999999999997 999999988877665544422 


Q ss_pred             HHHHHHHH----HhC---CCCccccCCc-----c-cHHHHHhhhhcCCceEEEEEecCC-chhHHHHHH--hhccCCceE
Q psy16770        226 QKMVEFFR----LKL---PYKLIVPLSA-----T-NVDAFLDNWREDNKVHALLFQRSL-PVRLRYLIN--AFKHRTTIV  289 (554)
Q Consensus       226 ~~i~~fl~----~~~---~~~~v~~~t~-----~-~~~~fl~~~~~~~~~~v~~f~~~~-~~~~~~~~~--a~~~~~~v~  289 (554)
                      ..++.-+.    ...   +......+.+     + .++.-+... ...++++++..... .|..-+-..  ..-..-.+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~l-v~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~  170 (227)
T KOG0911|consen   92 PFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKL-VKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVN  170 (227)
T ss_pred             HHHHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHh-cccCeEEEEecCCCCcccccccHHHHHHHHHcCCC
Confidence            22222222    221   1111111100     0 122233321 23444444443222 222211111  122234566


Q ss_pred             EEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        290 FGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       290 Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      |+..|.-  +++++.+..+.=+++||+
T Consensus       171 ~~~fdIL--~DeelRqglK~fSdWPTf  195 (227)
T KOG0911|consen  171 YTIFDVL--TDEELRQGLKEFSDWPTF  195 (227)
T ss_pred             eeEEecc--CCHHHHHHhhhhcCCCCc
Confidence            8888876  788888776654557764

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.93  E-value=6.5e-05  Score=59.71  Aligned_cols=74  Identities=22%  Similarity=0.458  Sum_probs=56.6

Q ss_pred             EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHH
Q psy16770        152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEF  231 (554)
Q Consensus       152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~f  231 (554)
                      |.+++++|++|..+...+++++..+   ++.+-.+|....+++ .+|||.+ +|++++  ||+. .+.|...+.+.|.+|
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~~~~~~-~~ygv~~-vPalvI--ng~~-~~~G~~p~~~el~~~   74 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEEL---GIEVEIIDIEDFEEI-EKYGVMS-VPALVI--NGKV-VFVGRVPSKEELKEL   74 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHT---TEEEEEEETTTHHHH-HHTT-SS-SSEEEE--TTEE-EEESS--HHHHHHHH
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhc---CCeEEEEEccCHHHH-HHcCCCC-CCEEEE--CCEE-EEEecCCCHHHHHHH
Confidence            4457899999999999999999988   367777887666666 9999997 999955  7764 456646688999888


Q ss_pred             HH
Q psy16770        232 FR  233 (554)
Q Consensus       232 l~  233 (554)
                      ++
T Consensus        75 l~   76 (76)
T PF13192_consen   75 LE   76 (76)
T ss_dssp             HH
T ss_pred             hC
Confidence            74

...

>KOG1789|consensus

Probab=97.91  E-value=1e-05  Score=89.39  Aligned_cols=56  Identities=32%  Similarity=0.490  Sum_probs=47.8

Q ss_pred             CCCCCcccccCCCC----CCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCC
Q psy16770         16 AVSLDPYETLGVPR----TASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSD   73 (554)
Q Consensus        16 ~~~~d~y~~Lgv~~----~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~   73 (554)
                      ....+.|+||.|+-    .-..+.||++|++||.+|||||||  +..++|.++++|||.|..
T Consensus      1278 mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1278 MSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLSS 1337 (2235)
T ss_pred             cchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHHH
Confidence            34578899999976    334578999999999999999985  567999999999999983

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.90  E-value=8.8e-05  Score=61.69  Aligned_cols=91  Identities=21%  Similarity=0.312  Sum_probs=66.8

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCC
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDK  323 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~  323 (554)
                      +.++++.++..   ...+++++|.+..++....+..++ .+++.+.||.+     .+.+++++++++  .|++++|++..
T Consensus         6 s~~~l~~~~~~---~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~-----~~~~~~~~~~~~--~~~i~l~~~~~   75 (97)
T cd02981           6 SKEELEKFLDK---DDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHT-----SDKEVAKKLKVK--PGSVVLFKPFE   75 (97)
T ss_pred             CHHHHHHHhcc---CCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEE-----ChHHHHHHcCCC--CCceEEeCCcc
Confidence            45667777742   466666677666666666666555 67788999999     678899998876  58999998865


Q ss_pred             CCCCceeecCCCChhHHHhHHhcC
Q psy16770        324 DRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       324 ~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +.+  ..+.+.++...|.+||..|
T Consensus        76 ~~~--~~y~g~~~~~~l~~fi~~~   97 (97)
T cd02981          76 EEP--VEYDGEFTEESLVEFIKDN   97 (97)
T ss_pred             cCC--ccCCCCCCHHHHHHHHHhC
Confidence            544  3467777888999999764

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.89  E-value=4.5e-05  Score=65.40  Aligned_cols=92  Identities=9%  Similarity=0.051  Sum_probs=64.9

Q ss_pred             ceEEEEEcCCCCcchhHHHHHHHHHhhc-cCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCC-eeE
Q psy16770        369 KLCVVLFSEDSPEHDASRHTLRRFAQES-RFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKK-IKY  446 (554)
Q Consensus       369 ~lcvvl~~~~~~~~~~~~~~l~~~a~~~-~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ky  446 (554)
                      ++.++++  ..++.++.++.++++|++- .+++ ++.|+|+|.+.....++.|    |...  .++|++...+... .||
T Consensus        18 ~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kg-ki~Fv~~d~~~~~~~~~~f----gl~~--~~~P~i~i~~~~~~~Ky   88 (111)
T cd03072          18 PFLILFH--DKDDLESLKEFKQAVARQLISEKG-AINFLTADGDKFRHPLLHL----GKTP--ADLPVIAIDSFRHMYLF   88 (111)
T ss_pred             CeEEEEe--cchHHHHHHHHHHHHHHHHHhcCc-eEEEEEEechHhhhHHHHc----CCCH--hHCCEEEEEcchhcCcC
Confidence            4555666  4446788999999999762 3554 5999999998876677766    2111  2566665555544 688


Q ss_pred             EEecCCCCCcccccchhhHHHHHHHHhhhcCC
Q psy16770        447 GWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDP  478 (554)
Q Consensus       447 ~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~  478 (554)
                      .++.+         +.|.++|.+|+++++.|+
T Consensus        89 ~~~~~---------~~t~~~i~~Fv~~~~~Gk  111 (111)
T cd03072          89 PDFED---------VYVPGKLKQFVLDLHSGK  111 (111)
T ss_pred             CCCcc---------ccCHHHHHHHHHHHhcCC
Confidence            65444         468899999999999985

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>KOG1672|consensus

Probab=97.88  E-value=1.1e-05  Score=73.68  Aligned_cols=84  Identities=19%  Similarity=0.297  Sum_probs=74.2

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD  212 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~  212 (554)
                      +..+|-..+   ....-+++.||-|.-..|+-+-..++.+|+..-  +.+|.+||+...|-|+.+++|+- .||+.+|++
T Consensus        73 ~Ekdf~~~~---~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~--eTrFikvnae~~PFlv~kL~IkV-LP~v~l~k~  146 (211)
T KOG1672|consen   73 SEKDFFEEV---KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV--ETRFIKVNAEKAPFLVTKLNIKV-LPTVALFKN  146 (211)
T ss_pred             cHHHHHHHh---hcCceEEEEEEcCCCcceehHHHHHHHHHHhcc--cceEEEEecccCceeeeeeeeeE-eeeEEEEEc
Confidence            356666666   355679999999999999999999999999875  48999999999999999999997 999999999


Q ss_pred             CeEEEEeCCc
Q psy16770        213 GRTSFFKEPS  222 (554)
Q Consensus       213 g~~~~y~~g~  222 (554)
                      |....|.-|.
T Consensus       147 g~~~D~iVGF  156 (211)
T KOG1672|consen  147 GKTVDYVVGF  156 (211)
T ss_pred             CEEEEEEeeH
Confidence            9999888765

>PTZ00256 glutathione peroxidase; Provisional

Probab=97.85  E-value=9.5e-05  Score=69.46  Aligned_cols=41  Identities=7%  Similarity=0.089  Sum_probs=35.8

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH  189 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~  189 (554)
                      ++++.+||+||+.|+...|.++++.+++++.|+.+..|+|+
T Consensus        43 vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~   83 (183)
T PTZ00256         43 AIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN   83 (183)
T ss_pred             EEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence            34566799999999999999999999998778999999874

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=97.85  E-value=1.4e-05  Score=78.96  Aligned_cols=104  Identities=13%  Similarity=0.101  Sum_probs=75.0

Q ss_pred             cccccc-cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        128 HKLSTT-HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       128 ~~~~Lt-~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      .+.+|+ .++|.+.|...+....++|+||.|.++.|..+...+..+|..+..  ++|.+|.+..-+ ++.+|.+.. .||
T Consensus       126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~~~-~~~~f~~~~-LPt  201 (265)
T PF02114_consen  126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRASKCP-ASENFPDKN-LPT  201 (265)
T ss_dssp             SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECGCC-TTTTS-TTC--SE
T ss_pred             eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhccC-cccCCcccC-CCE
Confidence            466775 478888886555567899999999999999999999999999874  899999998765 788999997 999


Q ss_pred             ceeccCCeEEEEeCC-------cccHHHHHHHHHHh
Q psy16770        207 IALLTDGRTSFFKEP-------SFSVQKMVEFFRLK  235 (554)
Q Consensus       207 i~~~~~g~~~~y~~g-------~~~~~~i~~fl~~~  235 (554)
                      |++|++|..+.-.-+       ..+..+|..|+.+.
T Consensus       202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            999999986544322       23445566655543

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PF13728 TraF: F plasmid transfer operon protein

Probab=97.84  E-value=6.4e-05  Score=72.29  Aligned_cols=81  Identities=25%  Similarity=0.450  Sum_probs=64.0

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-----------CcHHHHHHhCCcCCCCcceecc-CC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-----------NEQGLARRLGVGSQLPQIALLT-DG  213 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-----------~~~~l~~~~~v~~~~Pti~~~~-~g  213 (554)
                      .++.-|+.||.+.|+.|..+.|.+..+++.+   |+.+..|+.+           .+..+++++||.. +|++.++. ++
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~-~Pal~Lv~~~~  194 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKV-TPALFLVNPNT  194 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCc-CCEEEEEECCC
Confidence            4667899999999999999999999999998   3555555555           4689999999996 99999984 33


Q ss_pred             -eEEEEeCCcccHHHHHH
Q psy16770        214 -RTSFFKEPSFSVQKMVE  230 (554)
Q Consensus       214 -~~~~y~~g~~~~~~i~~  230 (554)
                       +...-.-|..+.++|.+
T Consensus       195 ~~~~pv~~G~~s~~~L~~  212 (215)
T PF13728_consen  195 KKWYPVSQGFMSLDELED  212 (215)
T ss_pred             CeEEEEeeecCCHHHHHH
Confidence             34444446678888865

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=97.83  E-value=0.00017  Score=60.85  Aligned_cols=96  Identities=8%  Similarity=0.085  Sum_probs=65.8

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++++.+..   .++++++.|....-+..+..     ..+.++.+.+.|+.++++  .+.+++++++|.+ .||
T Consensus         3 v~~l~~~~f~~~i~~---~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~i~~-~Pt   76 (104)
T cd03004           3 VITLTPEDFPELVLN---RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ--KYESLCQQANIRA-YPT   76 (104)
T ss_pred             ceEcCHHHHHHHHhc---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC--chHHHHHHcCCCc-ccE
Confidence            456678888888753   35577776654433322211     122245677999999998  6789999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCC-hhHHHhHH
Q psy16770        316 LLIFKEDKDRPSASITMNSIP-VPTLQDIT  344 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~-~~~l~~fi  344 (554)
                      +++|+++...+  ..+.|..+ .+.|.+||
T Consensus        77 ~~~~~~g~~~~--~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          77 IRLYPGNASKY--HSYNGWHRDADSILEFI  104 (104)
T ss_pred             EEEEcCCCCCc--eEccCCCCCHHHHHhhC
Confidence            99998863433  34666666 77777764

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.83  E-value=0.00012  Score=62.05  Aligned_cols=92  Identities=14%  Similarity=0.287  Sum_probs=66.4

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCC-
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKED-  322 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~-  322 (554)
                      +.+++++|+..   .+.+++++|.+..++....+..++ .+++++.|+++     .++++.+++++ .  |++++|++. 
T Consensus         7 s~~~l~~f~~~---~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~-----~~~~~~~~~~~-~--~~ivl~~p~~   75 (104)
T cd03069           7 TEAEFEKFLSD---DDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHT-----SDKQLLEKYGY-G--EGVVLFRPPR   75 (104)
T ss_pred             CHHHHHHHhcc---CCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEE-----ChHHHHHhcCC-C--CceEEEechh
Confidence            55778888853   466667777776666666666555 67799999999     67889999988 3  789999542 


Q ss_pred             ---CCCCCceeecCCCChhHHHhHHhcC
Q psy16770        323 ---KDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       323 ---~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                         ..+.....+.|+++...|.+||..+
T Consensus        76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          76 LSNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             hhcccCcccccccCcCCHHHHHHHHHhh
Confidence               1112224578888888999999875

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=97.82  E-value=3.9e-05  Score=66.76  Aligned_cols=68  Identities=25%  Similarity=0.602  Sum_probs=54.2

Q ss_pred             CCCcEEEEEEcc-cccccccchHHHHHHHHHhCCCCEEEEEEEecCc---------------------HHHHHHhCCc--
Q psy16770        146 YTTPHLILFYSD-WCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE---------------------QGLARRLGVG--  201 (554)
Q Consensus       146 ~~~~~lV~Fya~-wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~---------------------~~l~~~~~v~--  201 (554)
                      .+++++|.||+. ||++|....+.+.++.++++..++.+..|..+..                     ..+++.|++.  
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  103 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE  103 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence            357999999999 9999999999999999999877899999988662                     3566667766  


Q ss_pred             ----CCCCcceec-cCCe
Q psy16770        202 ----SQLPQIALL-TDGR  214 (554)
Q Consensus       202 ----~~~Pti~~~-~~g~  214 (554)
                          . +|++.++ ++|+
T Consensus       104 ~~~~~-~p~~~lid~~g~  120 (124)
T PF00578_consen  104 KDTLA-LPAVFLIDPDGK  120 (124)
T ss_dssp             TTSEE-SEEEEEEETTSB
T ss_pred             cCCce-EeEEEEECCCCE
Confidence                5 6776666 3443

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=97.79  E-value=7.1e-05  Score=66.73  Aligned_cols=81  Identities=22%  Similarity=0.291  Sum_probs=59.3

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------cHHHHHHhCCcCCC
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------EQGLARRLGVGSQL  204 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------~~~l~~~~~v~~~~  204 (554)
                      +++++|.|| +.||+.|....|.+.++.+.+...++.+..|..+.                     +..+++.||+.. .
T Consensus        23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-~  101 (140)
T cd03017          23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG-E  101 (140)
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc-c
Confidence            568899999 58999999999999999988876567777775543                     346777788875 7


Q ss_pred             ---------Ccceec-cCCeEEEEeCCcccHHHH
Q psy16770        205 ---------PQIALL-TDGRTSFFKEPSFSVQKM  228 (554)
Q Consensus       205 ---------Pti~~~-~~g~~~~y~~g~~~~~~i  228 (554)
                               |+.+++ ++|++...+.|....+++
T Consensus       102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~  135 (140)
T cd03017         102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHA  135 (140)
T ss_pred             cccccCCcceeEEEECCCCEEEEEEecCCccchH
Confidence                     777777 567775555454444444

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>KOG2501|consensus

Probab=97.77  E-value=5e-05  Score=67.83  Aligned_cols=73  Identities=23%  Similarity=0.407  Sum_probs=57.7

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecC-------------------------cHHHHHHh
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHN-------------------------EQGLARRL  198 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~-------------------------~~~l~~~~  198 (554)
                      .++.+.+.|.|.||++|+.+.|..+++.++++..  .+.++-|+.+.                         .++++++|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            4578999999999999999999999988888743  35666666554                         23789999


Q ss_pred             CCcCCCCcceec-cCCeEEEEe
Q psy16770        199 GVGSQLPQIALL-TDGRTSFFK  219 (554)
Q Consensus       199 ~v~~~~Pti~~~-~~g~~~~y~  219 (554)
                      +|.+ .|++++. .+|..+...
T Consensus       112 ~v~~-iP~l~i~~~dG~~v~~d  132 (157)
T KOG2501|consen  112 EVKG-IPALVILKPDGTVVTED  132 (157)
T ss_pred             ccCc-CceeEEecCCCCEehHh
Confidence            9997 9999888 567666554

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.74  E-value=0.00021  Score=60.85  Aligned_cols=95  Identities=18%  Similarity=0.270  Sum_probs=65.0

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCC-------chhHHHHHHhhc--c--CCceEEEEEEccCCCChhHHhHhCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSL-------PVRLRYLINAFK--H--RTTIVFGVIVYDQEDSSSVFQRFKV  309 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~-------~~~~~~~~~a~~--~--~~~v~Fg~v~~~~~~~~~l~~k~~i  309 (554)
                      +..++.+++++.+.    .++++++.|...-       .+.+...+..++  +  .+.+.|+.++++  .+.+++++|+|
T Consensus         3 v~~l~~~~f~~~i~----~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d--~~~~l~~~~~v   76 (108)
T cd02996           3 IVSLTSGNIDDILQ----SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD--KESDIADRYRI   76 (108)
T ss_pred             eEEcCHhhHHHHHh----cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC--CCHHHHHhCCC
Confidence            45668889998773    4567777774332       222332322221  2  236899999998  67899999999


Q ss_pred             CCCCceEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770        310 PGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDIT  344 (554)
Q Consensus       310 ~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi  344 (554)
                      .+ +||+++|+++....  ..+.|..+.+.|.+||
T Consensus        77 ~~-~Ptl~~~~~g~~~~--~~~~g~~~~~~l~~fi  108 (108)
T cd02996          77 NK-YPTLKLFRNGMMMK--REYRGQRSVEALAEFV  108 (108)
T ss_pred             Cc-CCEEEEEeCCcCcc--eecCCCCCHHHHHhhC
Confidence            97 99999998765322  4566788888888775

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>KOG0723|consensus

Probab=97.74  E-value=4.7e-05  Score=62.36  Aligned_cols=53  Identities=23%  Similarity=0.403  Sum_probs=45.8

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCh
Q psy16770         19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDA   74 (554)
Q Consensus        19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~   74 (554)
                      ...-.||||+|+++.+.||+|+||.-...|||+..+|   -.-.+||||+++|...
T Consensus        56 ~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP---YlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   56 REAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP---YLASKINEAKDLLEGT  108 (112)
T ss_pred             HHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH---HHHHHHHHHHHHHhcc
Confidence            3445699999999999999999999999999998665   4567899999999764

>TIGR03137 AhpC peroxiredoxin

Probab=97.73  E-value=0.00015  Score=68.30  Aligned_cols=87  Identities=18%  Similarity=0.285  Sum_probs=63.3

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------------------------cHHHHHHhCC
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------------------------EQGLARRLGV  200 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------------------------~~~l~~~~~v  200 (554)
                      +++++|.|| +.||+.|....|.+.++.+++++.|+.+..|.++.                         +..+++.||+
T Consensus        31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv  110 (187)
T TIGR03137        31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV  110 (187)
T ss_pred             CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence            458899999 99999999999999999999876667777666542                         3467888888


Q ss_pred             cC-----CCCcceec-cCCeEEEEe----CCcccHHHHHHHHH
Q psy16770        201 GS-----QLPQIALL-TDGRTSFFK----EPSFSVQKMVEFFR  233 (554)
Q Consensus       201 ~~-----~~Pti~~~-~~g~~~~y~----~g~~~~~~i~~fl~  233 (554)
                      ..     ..|+..++ ++|++....    ...+..++|.+.++
T Consensus       111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~  153 (187)
T TIGR03137       111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK  153 (187)
T ss_pred             cccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            61     14877777 678764332    12247777877765

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.71  E-value=0.00039  Score=57.27  Aligned_cols=116  Identities=13%  Similarity=0.175  Sum_probs=83.2

Q ss_pred             cccccccchhhhhhcCC-CCceEEEEEcC-CCCcchhHHHHHHHHHhhccCCC-CceEEEEEecccchHHHHhhCCCCC-
Q psy16770        350 LTLPRISSQSMLDAVCP-VKKLCVVLFSE-DSPEHDASRHTLRRFAQESRFVH-NNIAFMYVFIEKQPEFVNALTSPED-  425 (554)
Q Consensus       350 ~~v~~lt~~~~~~~~c~-~~~lcvvl~~~-~~~~~~~~~~~l~~~a~~~~~~~-~~v~F~~vd~~~q~~~~~~~~~~~~-  425 (554)
                      |.+.+++.+++++..-. ..+..+++|.. .+++.-+..+.++++|++  +++ ..+.|+|||-+..+-+....-+..+ 
T Consensus         1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~--nt~np~LsiIWIDPD~FPllv~yWektF~I   78 (120)
T cd03074           1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARD--NTDNPDLSIIWIDPDDFPLLVPYWEKTFGI   78 (120)
T ss_pred             CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHh--cCcCCCceEEEECCccCchhhHHHHhhcCc
Confidence            44567777888876642 23777888874 556778899999999999  764 5699999999988876664433333 


Q ss_pred             CccccceEEEEEEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHhhh
Q psy16770        426 SSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLV  475 (554)
Q Consensus       426 ~~~~~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~  475 (554)
                      ... .|++-+|.+.+.+...|.+-+..       ...|.+.|+++|++++
T Consensus        79 Dl~-~PqIGVV~vtdadSvW~~m~~~~-------d~~t~~~Le~WiedVL  120 (120)
T cd03074          79 DLF-RPQIGVVNVTDADSVWMEMDDDE-------DLPTAEELEDWIEDVL  120 (120)
T ss_pred             ccC-CCceeeEecccccceeEeccccc-------ccCcHHHHHHHHHhhC
Confidence            221 37888888877777888654431       1258899999999875

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=97.70  E-value=0.00019  Score=66.74  Aligned_cols=88  Identities=18%  Similarity=0.308  Sum_probs=63.3

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      +++++|.|| +.||++|....|.+.++++++...++.+..|.++.                            ...++++
T Consensus        29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~  108 (173)
T cd03015          29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD  108 (173)
T ss_pred             CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence            468899999 89999999999999999999876567777776543                            2346667


Q ss_pred             hCCc------CCCCcceec-cCCeEEEEe----CCcccHHHHHHHHHHh
Q psy16770        198 LGVG------SQLPQIALL-TDGRTSFFK----EPSFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~------~~~Pti~~~-~~g~~~~y~----~g~~~~~~i~~fl~~~  235 (554)
                      ||+.      . .|+.+++ ++|+.....    ...++.++|...++..
T Consensus       109 ~gv~~~~~~~~-~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         109 YGVLDEEEGVA-LRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             hCCccccCCce-eeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            7775      3 5677777 577764444    2224567788877654

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=97.67  E-value=0.00038  Score=59.09  Aligned_cols=101  Identities=15%  Similarity=0.198  Sum_probs=69.0

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhH-----HHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRL-----RYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~-----~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++++.+.+   .++++++.|....-+..     .+...+..+.+.+.|+.++++...+.+++++|+|.+ .|+
T Consensus         2 v~~l~~~~~~~~i~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~-~Pt   77 (109)
T cd03002           2 VYELTPKNFDKVVHN---TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQG-FPT   77 (109)
T ss_pred             eEEcchhhHHHHHhc---CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCc-CCE
Confidence            346778889888864   46666776643322211     111222245677899999998544788999999997 999


Q ss_pred             EEEEeCCCC--CCCceeecCCCChhHHHhHHh
Q psy16770        316 LLIFKEDKD--RPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       316 lvvfk~~~~--~~~~~i~~~~~~~~~l~~fi~  345 (554)
                      +++|+++..  ......+.|..+...|.+||.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~  109 (109)
T cd03002          78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFVL  109 (109)
T ss_pred             EEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence            999988652  112245778889989998874

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=97.66  E-value=0.00047  Score=57.78  Aligned_cols=93  Identities=18%  Similarity=0.179  Sum_probs=64.2

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++++.+.    ..+++++.|....-+..+..     ..+..+.+.+.|+.++++  .++.++++++|.+ .||
T Consensus         3 ~~~l~~~~f~~~v~----~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~--~~~~~~~~~~v~~-~Pt   75 (101)
T cd03003           3 IVTLDRGDFDAAVN----SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCG--DDRMLCRSQGVNS-YPS   75 (101)
T ss_pred             eEEcCHhhHHHHhc----CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCC--ccHHHHHHcCCCc-cCE
Confidence            34567888888773    34667776654433322211     122255677999999998  6789999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhH
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDI  343 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~f  343 (554)
                      +++|+++.. .  ..+.|..+...|.+|
T Consensus        76 ~~~~~~g~~-~--~~~~G~~~~~~l~~f  100 (101)
T cd03003          76 LYVFPSGMN-P--EKYYGDRSKESLVKF  100 (101)
T ss_pred             EEEEcCCCC-c--ccCCCCCCHHHHHhh
Confidence            999986532 2  346777888777765

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=97.64  E-value=0.00018  Score=67.32  Aligned_cols=42  Identities=12%  Similarity=0.068  Sum_probs=37.7

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH  189 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~  189 (554)
                      ++++||.|+|.||+.|++ .|.++++.+++++.|+.+..+.|.
T Consensus        25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606         25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence            578999999999999975 889999999998778999999884

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.60  E-value=0.00024  Score=59.70  Aligned_cols=89  Identities=18%  Similarity=0.242  Sum_probs=61.9

Q ss_pred             ceEEEEEcC-CCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecC-CCeeE
Q psy16770        369 KLCVVLFSE-DSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDY-KKIKY  446 (554)
Q Consensus       369 ~lcvvl~~~-~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~ky  446 (554)
                      +.++++|.. ..+.+....+.++++|++  +++ +++|+|+|+++++++++.|-..    .  ..+|.+...+. ++.+|
T Consensus        13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~--~~~-~v~f~~vd~~~~~~~~~~~~i~----~--~~~P~~~~~~~~~~~k~   83 (103)
T cd02982          13 KPLLVLFYNKDDSESEELRERFKEVAKK--FKG-KLLFVVVDADDFGRHLEYFGLK----E--EDLPVIAIINLSDGKKY   83 (103)
T ss_pred             CCEEEEEEcCChhhHHHHHHHHHHHHHH--hCC-eEEEEEEchHhhHHHHHHcCCC----h--hhCCEEEEEeccccccc
Confidence            456666664 344678899999999999  974 5999999999989999988211    0  14554433333 35677


Q ss_pred             EEecCCCCCcccccchhhHHHHHHHHhhh
Q psy16770        447 GWLLGDAVDDWKDYNTTKDRLDAGLRSLV  475 (554)
Q Consensus       447 ~~~~~~~~~~~~~~~~t~e~l~~fl~~~~  475 (554)
                      ....+         ..+.+.|.+|+++++
T Consensus        84 ~~~~~---------~~~~~~l~~fi~~~~  103 (103)
T cd02982          84 LMPEE---------ELTAESLEEFVEDFL  103 (103)
T ss_pred             CCCcc---------ccCHHHHHHHHHhhC
Confidence            43322         258899999999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.60  E-value=0.00048  Score=58.59  Aligned_cols=95  Identities=18%  Similarity=0.264  Sum_probs=66.2

Q ss_pred             cCCcccHHHHHhhhhcC-CceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEe
Q psy16770        243 PLSATNVDAFLDNWRED-NKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFK  320 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~-~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk  320 (554)
                      +.+.++++.|+..   . ..+++++|.+..++....+..++ .+++++.|+++     .+.++.+++++.  .|++++|+
T Consensus         5 i~s~~ele~f~~~---~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t-----~~~~~~~~~~~~--~~~vvl~r   74 (107)
T cd03068           5 LQTLKQVQEFLRD---GDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHT-----FDSEIFKSLKVS--PGQLVVFQ   74 (107)
T ss_pred             cCCHHHHHHHHhc---CCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEE-----ChHHHHHhcCCC--CCceEEEC
Confidence            3356778888853   3 56666677776666556565555 77899999999     678898999987  57899996


Q ss_pred             CC----CCCCCceeecCC-CChhH-HHhHHhcC
Q psy16770        321 ED----KDRPSASITMNS-IPVPT-LQDITDNN  347 (554)
Q Consensus       321 ~~----~~~~~~~i~~~~-~~~~~-l~~fi~~~  347 (554)
                      +.    ..++....+.+. +.... |..||+.|
T Consensus        75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~  107 (107)
T cd03068          75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH  107 (107)
T ss_pred             cHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence            51    222333456666 67766 99999865

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.59  E-value=0.00062  Score=57.03  Aligned_cols=96  Identities=18%  Similarity=0.194  Sum_probs=66.4

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHH-----HHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRY-----LINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~-----~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++++++++.+..   ..++++++|....-+..+.     ...+..+.+.+.|+.++++  .+.+++++|+|.+ .|+
T Consensus         2 v~~l~~~~~~~~i~~---~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~~~~~~~i~~-~P~   75 (103)
T cd03001           2 VVELTDSNFDKKVLN---SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD--VHQSLAQQYGVRG-FPT   75 (103)
T ss_pred             eEEcCHHhHHHHHhc---CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc--chHHHHHHCCCCc-cCE
Confidence            345678888888753   3555666664433222221     1223355678999999987  6888999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDIT  344 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi  344 (554)
                      +++|+++...+  ..+.+..+.+.|.+|+
T Consensus        76 ~~~~~~~~~~~--~~~~g~~~~~~l~~~~  102 (103)
T cd03001          76 IKVFGAGKNSP--QDYQGGRTAKAIVSAA  102 (103)
T ss_pred             EEEECCCCcce--eecCCCCCHHHHHHHh
Confidence            99998763333  4567888888888886

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=97.58  E-value=0.00039  Score=64.31  Aligned_cols=42  Identities=10%  Similarity=0.137  Sum_probs=35.9

Q ss_pred             CCcEEEEEEccc-ccccccchHHHHHHHHHhCCCCEEEEEEEecC
Q psy16770        147 TTPHLILFYSDW-CFACLQVEPIFKKLMDELSPLGVGFFTVHVHN  190 (554)
Q Consensus       147 ~~~~lV~Fya~w-C~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~  190 (554)
                      +++++|.||+.| |+.|....|.+.++++++.  ++.+..|.++.
T Consensus        44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~   86 (167)
T PRK00522         44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADL   86 (167)
T ss_pred             CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCC
Confidence            468999999999 9999999999999999884  57777777654

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=97.56  E-value=0.00071  Score=58.13  Aligned_cols=97  Identities=9%  Similarity=0.088  Sum_probs=65.8

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHH-----HHHHhhccCCceEEEEEEccCCCChhHH-hHhCCCCCCc
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLR-----YLINAFKHRTTIVFGVIVYDQEDSSSVF-QRFKVPGDKD  314 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~-----~~~~a~~~~~~v~Fg~v~~~~~~~~~l~-~k~~i~~~~P  314 (554)
                      +..++++++++...-- ..++++++.|...-..+.+     +...+..+.+.+.|+.++++  .+.+++ ++|+|.+ +|
T Consensus        11 v~~l~~~~f~~~~~v~-~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d--~~~~l~~~~~~I~~-~P   86 (113)
T cd03006          11 VLDFYKGQLDYAEELR-TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW--WPQGKCRKQKHFFY-FP   86 (113)
T ss_pred             eEEechhhhHHHHhcc-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC--CChHHHHHhcCCcc-cC
Confidence            6677888888873211 3566777766443322222     11222245677999999998  677888 5899997 99


Q ss_pred             eEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770        315 SLLIFKEDKDRPSASITMNSIPVPTLQDIT  344 (554)
Q Consensus       315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi  344 (554)
                      |+++|+++.. +  ..+.|..+...|..|+
T Consensus        87 Tl~lf~~g~~-~--~~y~G~~~~~~i~~~~  113 (113)
T cd03006          87 VIHLYYRSRG-P--IEYKGPMRAPYMEKFV  113 (113)
T ss_pred             EEEEEECCcc-c--eEEeCCCCHHHHHhhC
Confidence            9999987543 3  4577888888887763

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=97.55  E-value=0.00067  Score=57.76  Aligned_cols=104  Identities=15%  Similarity=0.204  Sum_probs=73.3

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHH-HHhC-CCCEEEEEEEecC-----cHHHHHHhCC
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLM-DELS-PLGVGFFTVHVHN-----EQGLARRLGV  200 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a-~~l~-~~~v~~~~Vd~~~-----~~~l~~~~~v  200 (554)
                      ..+.|+.-+|++.|   +..+.+||.|=...  +--.-..+|.++| +..+ ...+-+|.|-...     |.+|+++|+|
T Consensus         5 G~v~LD~~tFdKvi---~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i   79 (126)
T PF07912_consen    5 GCVPLDELTFDKVI---PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKI   79 (126)
T ss_dssp             TSEEESTTHHHHHG---GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-
T ss_pred             ceeeccceehhhee---ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCC
Confidence            36788899999999   46789999995322  2333456788888 4444 2358888887654     7899999999


Q ss_pred             cC-CCCcceeccCC--eEEEE--eCCcccHHHHHHHHHHhCC
Q psy16770        201 GS-QLPQIALLTDG--RTSFF--KEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       201 ~~-~~Pti~~~~~g--~~~~y--~~g~~~~~~i~~fl~~~~~  237 (554)
                      .. .||.+++|..|  .++.|  .+. .++++|..|+..+.+
T Consensus        80 ~ke~fPv~~LF~~~~~~pv~~p~~~~-~t~~~l~~fvk~~t~  120 (126)
T PF07912_consen   80 DKEDFPVIYLFVGDKEEPVRYPFDGD-VTADNLQRFVKSNTG  120 (126)
T ss_dssp             SCCC-SEEEEEESSTTSEEEE-TCS--S-HHHHHHHHHHTSS
T ss_pred             CcccCCEEEEecCCCCCCccCCccCC-ccHHHHHHHHHhCCC
Confidence            65 49999999743  35666  444 588999999998865

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.54  E-value=0.00031  Score=63.16  Aligned_cols=47  Identities=28%  Similarity=0.429  Sum_probs=38.1

Q ss_pred             CcEEEEE-EcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHH
Q psy16770        148 TPHLILF-YSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGL  194 (554)
Q Consensus       148 ~~~lV~F-ya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l  194 (554)
                      ++++|.| ++.||+.|+...|.+.++.++++..++.+..|..+.....
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~   71 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKL   71 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHH
Confidence            4555555 5999999999999999999999766799999988765443

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.51  E-value=0.00013  Score=58.81  Aligned_cols=71  Identities=17%  Similarity=0.423  Sum_probs=49.5

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-----HHHHHhCCcCCCCcceeccCCeEEEEeCCcccH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-----GLARRLGVGSQLPQIALLTDGRTSFFKEPSFSV  225 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-----~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~  225 (554)
                      ++.|+++||++|+++.+.+.+..  ..+ .+.+..||.+.+.     .+.+..|+.+ +|++  |.+|+.   .||.   
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~~~~~~~~~~l~~~~g~~~-vP~v--~i~g~~---igg~---   68 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQLSNGSEIQDYLEEITGQRT-VPNI--FINGKF---IGGC---   68 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCCCChHHHHHHHHHHhCCCC-CCeE--EECCEE---EcCH---
Confidence            46799999999999999988765  222 2667777766543     3667789997 9997  446753   4553   


Q ss_pred             HHHHHHHH
Q psy16770        226 QKMVEFFR  233 (554)
Q Consensus       226 ~~i~~fl~  233 (554)
                      +++.+..+
T Consensus        69 ~~~~~~~~   76 (84)
T TIGR02180        69 SDLLALYK   76 (84)
T ss_pred             HHHHHHHH
Confidence            55655544

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=97.50  E-value=0.00094  Score=55.62  Aligned_cols=93  Identities=18%  Similarity=0.221  Sum_probs=64.4

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecCCchhH-------HHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEE
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRSLPVRL-------RYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLL  317 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~-------~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlv  317 (554)
                      +.+++++.+.    .++++++.|....-+..       ...+..+...+.+.|+.++++  .+..++++|+|.. .|+++
T Consensus         2 ~~~~~~~~~~----~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~i~~-~P~~~   74 (102)
T TIGR01126         2 TASNFDDIVL----SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT--AEKDLASRFGVSG-FPTIK   74 (102)
T ss_pred             chhhHHHHhc----cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc--chHHHHHhCCCCc-CCEEE
Confidence            5567777763    46677777744333322       222222222226899999987  6889999999997 99999


Q ss_pred             EEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        318 IFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       318 vfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +|+++.. +  ..+.|..+...|..||+.+
T Consensus        75 ~~~~~~~-~--~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        75 FFPKGKK-P--VDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             EecCCCc-c--eeecCCCCHHHHHHHHHhc
Confidence            9998655 3  4577888888899999864

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.49  E-value=0.0039  Score=69.00  Aligned_cols=180  Identities=12%  Similarity=0.131  Sum_probs=116.8

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceecc-CCeE--EEEeCCc
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLT-DGRT--SFFKEPS  222 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~-~g~~--~~y~~g~  222 (554)
                      .+.+.|+.|+.+.|..|..+....++++. +.+ .+.+...|..++.+++++|++.. .|++.++. +|+.  +.|+|-+
T Consensus       365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~-~i~~~~~~~~~~~~~~~~~~v~~-~P~~~i~~~~~~~~~i~f~g~P  441 (555)
T TIGR03143       365 ENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSE-KLNSEAVNRGEEPESETLPKITK-LPTVALLDDDGNYTGLKFHGVP  441 (555)
T ss_pred             CCCEEEEEEECCCchhhHHHHHHHHHHHh-cCC-cEEEEEeccccchhhHhhcCCCc-CCEEEEEeCCCcccceEEEecC
Confidence            34456888889899999998888888874 444 48888899999999999999995 99999984 5542  6777643


Q ss_pred             ccHHHHHHHHH---HhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCc---hhHHHHHHhh-ccCCceEEEEEEc
Q psy16770        223 FSVQKMVEFFR---LKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLP---VRLRYLINAF-KHRTTIVFGVIVY  295 (554)
Q Consensus       223 ~~~~~i~~fl~---~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~---~~~~~~~~a~-~~~~~v~Fg~v~~  295 (554)
                       .=.++..|+.   ...++.  ..++++..+ .+...  +.+..+-+|-...-   +........+ ...+++..-.++.
T Consensus       442 -~G~Ef~s~i~~i~~~~~~~--~~l~~~~~~-~i~~~--~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~  515 (555)
T TIGR03143       442 -SGHELNSFILALYNAAGPG--QPLGEELLE-KIKKI--TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDV  515 (555)
T ss_pred             -ccHhHHHHHHHHHHhcCCC--CCCCHHHHH-HHHhc--CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEEC
Confidence             3355555554   444333  234444443 44332  23333445422211   2222222222 3345788888887


Q ss_pred             cCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770        296 DQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDIT  344 (554)
Q Consensus       296 ~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi  344 (554)
                      +  ..++++++|+|.+ .|++++   +.+    .+..|..+.+.+.+||
T Consensus       516 ~--~~~~~~~~~~v~~-vP~~~i---~~~----~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       516 S--HFPDLKDEYGIMS-VPAIVV---DDQ----QVYFGKKTIEEMLELI  554 (555)
T ss_pred             c--ccHHHHHhCCcee-cCEEEE---CCE----EEEeeCCCHHHHHHhh
Confidence            7  6889999999997 999987   122    3455666777777665

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=97.48  E-value=0.00045  Score=62.77  Aligned_cols=75  Identities=21%  Similarity=0.300  Sum_probs=53.5

Q ss_pred             CCcEEEEEEcc-cccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------cHHHHHHhCCcCCC
Q psy16770        147 TTPHLILFYSD-WCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------EQGLARRLGVGSQL  204 (554)
Q Consensus       147 ~~~~lV~Fya~-wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------~~~l~~~~~v~~~~  204 (554)
                      +++++|.||+. ||+.|....+.+.++.+.+++.++.+..|..+.                     ...++++||+.. .
T Consensus        30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-~  108 (154)
T PRK09437         30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG-E  108 (154)
T ss_pred             CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc-c
Confidence            46899999975 688899999999999999887678888777654                     235666777653 3


Q ss_pred             ------------Ccceec-cCCeEEEEeCCc
Q psy16770        205 ------------PQIALL-TDGRTSFFKEPS  222 (554)
Q Consensus       205 ------------Pti~~~-~~g~~~~y~~g~  222 (554)
                                  |+.+++ ++|++...+.|.
T Consensus       109 ~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~  139 (154)
T PRK09437        109 KKFMGKTYDGIHRISFLIDADGKIEHVFDKF  139 (154)
T ss_pred             cccccccccCcceEEEEECCCCEEEEEEcCC
Confidence                        444455 577765555443

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=97.47  E-value=0.0008  Score=63.27  Aligned_cols=88  Identities=17%  Similarity=0.292  Sum_probs=65.3

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------------------------cHHHHHHhCC
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------------------------EQGLARRLGV  200 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------------------------~~~l~~~~~v  200 (554)
                      ++++++.|| +.||+.|....+.+.+..++++..++.+..|.++.                         +..++++||+
T Consensus        31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv  110 (187)
T PRK10382         31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  110 (187)
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence            457889999 99999999999999999999876667776666543                         3478889998


Q ss_pred             ----cCCC--Ccceec-cCCeEEEEe----CCcccHHHHHHHHHHh
Q psy16770        201 ----GSQL--PQIALL-TDGRTSFFK----EPSFSVQKMVEFFRLK  235 (554)
Q Consensus       201 ----~~~~--Pti~~~-~~g~~~~y~----~g~~~~~~i~~fl~~~  235 (554)
                          .+ .  |+..++ ++|++....    +..++.+++...+...
T Consensus       111 ~~~~~g-~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al  155 (187)
T PRK10382        111 MREDEG-LADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  155 (187)
T ss_pred             CcccCC-ceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence                34 5  888777 578763322    2235788888877544

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.00071  Score=59.77  Aligned_cols=84  Identities=18%  Similarity=0.313  Sum_probs=64.4

Q ss_pred             CCCCcEEEEEEcccccccccchHHHH---HHHHHhCCCCEEEEEEEecC----------------cHHHHHHhCCcCCCC
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFK---KLMDELSPLGVGFFTVHVHN----------------EQGLARRLGVGSQLP  205 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~---~~a~~l~~~~v~~~~Vd~~~----------------~~~l~~~~~v~~~~P  205 (554)
                      ..++..+++|-++.|..|.++.....   ++.+.+++. +.+..+|.+.                .++|+++++|++ +|
T Consensus        40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs-tP  117 (182)
T COG2143          40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS-TP  117 (182)
T ss_pred             ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc-Cc
Confidence            46788999999999999999876433   334445542 6666666543                458999999997 99


Q ss_pred             cceec-cCCeEEEEeCCcccHHHHHH
Q psy16770        206 QIALL-TDGRTSFFKEPSFSVQKMVE  230 (554)
Q Consensus       206 ti~~~-~~g~~~~y~~g~~~~~~i~~  230 (554)
                      |+++| ++|+.+-+-.|....+.+..
T Consensus       118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~  143 (182)
T COG2143         118 TFVFFDKTGKTILELPGYMPPEQFLA  143 (182)
T ss_pred             eEEEEcCCCCEEEecCCCCCHHHHHH
Confidence            99999 77888888888888777654

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.45  E-value=0.00048  Score=55.93  Aligned_cols=77  Identities=22%  Similarity=0.423  Sum_probs=57.3

Q ss_pred             EEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH----HHHHHhC--CcCCCCcceeccCCeEEEEeCCcc
Q psy16770        150 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ----GLARRLG--VGSQLPQIALLTDGRTSFFKEPSF  223 (554)
Q Consensus       150 ~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~----~l~~~~~--v~~~~Pti~~~~~g~~~~y~~g~~  223 (554)
                      -++.|+.+||++|++....++++..++.  ++.+..+|.+.+.    ++.+..+  +.+ +|++.  .+|+.   .||. 
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~~~~~~~~el~~~~~~~~~~-vP~if--i~g~~---igg~-   72 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIHAEGISKADLEKTVGKPVET-VPQIF--VDQKH---IGGC-   72 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECCCChHHHHHHHHHHCCCCCc-CCEEE--ECCEE---EcCH-
Confidence            3678999999999999999999887664  5788888888653    4555555  466 99975  47754   4554 


Q ss_pred             cHHHHHHHHHHhCC
Q psy16770        224 SVQKMVEFFRLKLP  237 (554)
Q Consensus       224 ~~~~i~~fl~~~~~  237 (554)
                        ++|.++++..++
T Consensus        73 --~~~~~~~~~~~~   84 (85)
T PRK11200         73 --TDFEAYVKENLG   84 (85)
T ss_pred             --HHHHHHHHHhcc
Confidence              788888876643

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.44  E-value=0.00055  Score=67.15  Aligned_cols=86  Identities=20%  Similarity=0.312  Sum_probs=65.6

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------cHHHHHHhCCcCCCCcceec-cC-
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------EQGLARRLGVGSQLPQIALL-TD-  212 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------~~~l~~~~~v~~~~Pti~~~-~~-  212 (554)
                      .++.-|+.||...|++|.++.|..+.+++.+   |+.+..|+.+.           +..+++++||.. +|++.+. .+ 
T Consensus       149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~-~Pal~Lv~~~t  224 (256)
T TIGR02739       149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKY-FPALYLVNPKS  224 (256)
T ss_pred             HhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCCCCCCCCccCChHHHHhcCCcc-CceEEEEECCC
Confidence            4557899999999999999999999999988   35555555554           367999999996 9999988 33 


Q ss_pred             CeEEEEeCCcccHHHHHHHHHHh
Q psy16770        213 GRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       213 g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      ++...---|..+.++|.+=+...
T Consensus       225 ~~~~pv~~G~iS~deL~~Ri~~v  247 (256)
T TIGR02739       225 QKMSPLAYGFISQDELKERILNV  247 (256)
T ss_pred             CcEEEEeeccCCHHHHHHHHHHH
Confidence            34433334677889887766543

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=97.37  E-value=0.0013  Score=55.02  Aligned_cols=95  Identities=18%  Similarity=0.265  Sum_probs=63.7

Q ss_pred             ccCCcccHHHHHhhhhcCCceEEEEEecCCchh-------HHHHHHhhccCCceEEEEEEccCCC-ChhHHhHhCCCCCC
Q psy16770        242 VPLSATNVDAFLDNWREDNKVHALLFQRSLPVR-------LRYLINAFKHRTTIVFGVIVYDQED-SSSVFQRFKVPGDK  313 (554)
Q Consensus       242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~-------~~~~~~a~~~~~~v~Fg~v~~~~~~-~~~l~~k~~i~~~~  313 (554)
                      ..++.+++++.+..   ..+++++.|....-+.       +...+......+.+.|+.++++  . ...++++|+|.+ .
T Consensus         3 ~~l~~~~~~~~~~~---~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~~~~~~~~i~~-~   76 (105)
T cd02998           3 VELTDSNFDKVVGD---DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDAD--EANKDLAKKYGVSG-F   76 (105)
T ss_pred             EEcchhcHHHHhcC---CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECC--CcchhhHHhCCCCC-c
Confidence            35567788776643   4556777664433332       2222222222357899999887  5 789999999997 9


Q ss_pred             ceEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770        314 DSLLIFKEDKDRPSASITMNSIPVPTLQDIT  344 (554)
Q Consensus       314 Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi  344 (554)
                      |++++|+++....  ..+.+..+.+.|.+||
T Consensus        77 P~~~~~~~~~~~~--~~~~g~~~~~~l~~~i  105 (105)
T cd02998          77 PTLKFFPKGSTEP--VKYEGGRDLEDLVKFV  105 (105)
T ss_pred             CEEEEEeCCCCCc--cccCCccCHHHHHhhC
Confidence            9999998764333  4577788888888775

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=97.32  E-value=0.00071  Score=60.96  Aligned_cols=43  Identities=12%  Similarity=0.357  Sum_probs=36.4

Q ss_pred             CcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC
Q psy16770        148 TPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN  190 (554)
Q Consensus       148 ~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~  190 (554)
                      ++++|.|| +.||+.|....|.++++.++++..++.+..|..+.
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~   72 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS   72 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence            57777777 99999999999999999999976678888887654

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PRK13190 putative peroxiredoxin; Provisional

Probab=97.28  E-value=0.0011  Score=63.35  Aligned_cols=86  Identities=14%  Similarity=0.274  Sum_probs=62.1

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------------cHHHHHHhCCc
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------------EQGLARRLGVG  201 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------------~~~l~~~~~v~  201 (554)
                      .+|+.|+++||+.|....+.+.+..++++..|+.+..|.++.                           +..+++.||+.
T Consensus        30 vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~  109 (202)
T PRK13190         30 VLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLI  109 (202)
T ss_pred             EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCc
Confidence            344468999999999999999999888876667776665542                           34677788873


Q ss_pred             ------CCCCcceec-cCCeEEEEe----CCcccHHHHHHHHHHh
Q psy16770        202 ------SQLPQIALL-TDGRTSFFK----EPSFSVQKMVEFFRLK  235 (554)
Q Consensus       202 ------~~~Pti~~~-~~g~~~~y~----~g~~~~~~i~~fl~~~  235 (554)
                            . +|+..++ .+|++....    ...++.+++...+...
T Consensus       110 ~~~~g~~-~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l  153 (202)
T PRK13190        110 DENSGAT-VRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL  153 (202)
T ss_pred             cccCCcE-EeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence                  3 7888888 577654322    2235889998888754

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=97.28  E-value=0.00075  Score=60.19  Aligned_cols=44  Identities=20%  Similarity=0.332  Sum_probs=38.0

Q ss_pred             CCcEEEEEEcccccc-cccchHHHHHHHHHhCCCC---EEEEEEEecC
Q psy16770        147 TTPHLILFYSDWCFA-CLQVEPIFKKLMDELSPLG---VGFFTVHVHN  190 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~-C~~l~p~~~~~a~~l~~~~---v~~~~Vd~~~  190 (554)
                      +++++|.||++||+. |.+..+.+.++.++++..+   +.+..|..+.
T Consensus        22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~   69 (142)
T cd02968          22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP   69 (142)
T ss_pred             CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence            568999999999997 9999999999999997643   8888888753

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=97.23  E-value=0.00087  Score=51.94  Aligned_cols=67  Identities=16%  Similarity=0.306  Sum_probs=45.6

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHh----CCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL----GVGSQLPQIALLTDGRTSFFKEPSFSVQ  226 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~----~v~~~~Pti~~~~~g~~~~y~~g~~~~~  226 (554)
                      ++.|+++||++|.++...+++       .++.+..+|.+.+......+    ++.+ +|++.+  +|+   ..+|. +.+
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~~~~~~-vP~i~~--~~~---~i~g~-~~~   67 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDEDPEALEELKKLNGYRS-VPVVVI--GDE---HLSGF-RPD   67 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCCCHHHHHHHHHHcCCcc-cCEEEE--CCE---EEecC-CHH
Confidence            567999999999998776664       25677788887766554444    6776 999976  443   22343 456


Q ss_pred             HHHHH
Q psy16770        227 KMVEF  231 (554)
Q Consensus       227 ~i~~f  231 (554)
                      .|.++
T Consensus        68 ~l~~~   72 (73)
T cd02976          68 KLRAL   72 (73)
T ss_pred             HHHhh
Confidence            66654

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=97.21  E-value=0.0032  Score=53.60  Aligned_cols=85  Identities=16%  Similarity=0.184  Sum_probs=59.3

Q ss_pred             HHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCC--chhHHHHH-----HhhccCCceEEEEEEccCCCC
Q psy16770        228 MVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSL--PVRLRYLI-----NAFKHRTTIVFGVIVYDQEDS  300 (554)
Q Consensus       228 i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~--~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~  300 (554)
                      +++++....+-+   .++..+++++++    .+.++|+.|....  -++.+...     .+.++.+.+.|+.++++  .+
T Consensus         2 ~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid--~~   72 (111)
T cd02965           2 LVARLQTRHGWP---RVDAATLDDWLA----AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRA--DE   72 (111)
T ss_pred             HhHHHHHhcCCc---ccccccHHHHHh----CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECC--CC
Confidence            355666555533   567889998883    4566677775442  33322222     23366678999999988  67


Q ss_pred             hhHHhHhCCCCCCceEEEEeCC
Q psy16770        301 SSVFQRFKVPGDKDSLLIFKED  322 (554)
Q Consensus       301 ~~l~~k~~i~~~~Ptlvvfk~~  322 (554)
                      ++++.+|+|.+ .||+++|+++
T Consensus        73 ~~la~~f~V~s-IPTli~fkdG   93 (111)
T cd02965          73 QALAARFGVLR-TPALLFFRDG   93 (111)
T ss_pred             HHHHHHcCCCc-CCEEEEEECC
Confidence            89999999997 9999999975

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.18  E-value=0.0017  Score=63.40  Aligned_cols=88  Identities=22%  Similarity=0.223  Sum_probs=63.9

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------cHHHHHHhCCcCCCCcceecc--CCe
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------EQGLARRLGVGSQLPQIALLT--DGR  214 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------~~~l~~~~~v~~~~Pti~~~~--~g~  214 (554)
                      .++.-|+.||...|++|.+++|..+.+++.++ ..+..+.+|..-         +...++++||.. +|++.+..  .++
T Consensus       142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~-~PAl~Lv~~~t~~  219 (248)
T PRK13703        142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKY-FPALMLVDPKSGS  219 (248)
T ss_pred             HhcceEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCCccChhHHHhcCCcc-cceEEEEECCCCc
Confidence            35578999999999999999999999999983 224444444322         456788999996 99999983  234


Q ss_pred             EEEEeCCcccHHHHHHHHHHh
Q psy16770        215 TSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       215 ~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      ...---|..+.++|.+=+...
T Consensus       220 ~~pv~~G~iS~deL~~Ri~~v  240 (248)
T PRK13703        220 VRPLSYGFITQDDLAKRFLNV  240 (248)
T ss_pred             EEEEeeccCCHHHHHHHHHHH
Confidence            443344667888887665543

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.17  E-value=0.00054  Score=59.04  Aligned_cols=77  Identities=22%  Similarity=0.449  Sum_probs=50.6

Q ss_pred             ccccccccC-CCCCCcEEEEEEc-------ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-------HHHH--H
Q psy16770        135 WNFEKNYIP-KSYTTPHLILFYS-------DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-------GLAR--R  197 (554)
Q Consensus       135 ~~F~~~v~~-~~~~~~~lV~Fya-------~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-------~l~~--~  197 (554)
                      ++|.+.+.. .+.+++++|.|++       +||+.|....|..+++...... +..++.|.++..+       ..-.  +
T Consensus         6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR~~p~   84 (119)
T PF06110_consen    6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFRTDPD   84 (119)
T ss_dssp             HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred             HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCceEcce
Confidence            344444432 2345788888985       4999999999999998888654 6899988886532       2333  5


Q ss_pred             hCCcCCCCcceeccCC
Q psy16770        198 LGVGSQLPQIALLTDG  213 (554)
Q Consensus       198 ~~v~~~~Pti~~~~~g  213 (554)
                      +++++ +|||+-+..+
T Consensus        85 ~~l~~-IPTLi~~~~~   99 (119)
T PF06110_consen   85 LKLKG-IPTLIRWETG   99 (119)
T ss_dssp             C---S-SSEEEECTSS
T ss_pred             eeeee-cceEEEECCC
Confidence            89997 9999999776

; PDB: 1V9W_A 1WOU_A.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=97.17  E-value=0.0035  Score=55.04  Aligned_cols=114  Identities=13%  Similarity=0.104  Sum_probs=73.7

Q ss_pred             HHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCc--h---h--HHHHHHhhccC-CceEEEEEEccC
Q psy16770        226 QKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLP--V---R--LRYLINAFKHR-TTIVFGVIVYDQ  297 (554)
Q Consensus       226 ~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~--~---~--~~~~~~a~~~~-~~v~Fg~v~~~~  297 (554)
                      ..|++-+... +-   ..++..+++.|+.    .....|+++.....  +   .  ...-..+.++. .+++|+.++.+ 
T Consensus         8 ~~l~~rl~~~-g~---~~~~~~~~~~~~~----~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD-   78 (132)
T PRK11509          8 DALWQRMLAR-GW---TPVSESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE-   78 (132)
T ss_pred             HHHHHHHHHc-CC---CccccccHHHHHh----CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECC-
Confidence            3454545443 33   3455688999985    35567777743321  1   1  11122233555 45999999988 


Q ss_pred             CCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccc
Q psy16770        298 EDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLP  353 (554)
Q Consensus       298 ~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~  353 (554)
                       .+++++.+|+|.+ .||+++|+++..-   ....|-.+...+.+||+..--...|
T Consensus        79 -~~~~LA~~fgV~s-iPTLl~FkdGk~v---~~i~G~~~k~~l~~~I~~~L~~~~~  129 (132)
T PRK11509         79 -QSEAIGDRFGVFR-FPATLVFTGGNYR---GVLNGIHPWAELINLMRGLVEPQQE  129 (132)
T ss_pred             -CCHHHHHHcCCcc-CCEEEEEECCEEE---EEEeCcCCHHHHHHHHHHHhcCcCc
Confidence             7899999999997 9999999985442   2345667888899998865444333

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=97.16  E-value=0.003  Score=52.67  Aligned_cols=92  Identities=16%  Similarity=0.312  Sum_probs=60.4

Q ss_pred             ccCCcccHHHHHhhhhcCCceEEEEEecCC-------chhHHHHHHhhcc-CCceEEEEEEccCCCChhHHhHhCCCCCC
Q psy16770        242 VPLSATNVDAFLDNWREDNKVHALLFQRSL-------PVRLRYLINAFKH-RTTIVFGVIVYDQEDSSSVFQRFKVPGDK  313 (554)
Q Consensus       242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~-------~~~~~~~~~a~~~-~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~  313 (554)
                      ..++.+++++.+.+    .. +++.|...-       .+.+...+..... ...+.|+.++++  .+..++++|+|.. .
T Consensus         3 ~~l~~~~f~~~~~~----~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~-~   74 (102)
T cd03005           3 LELTEDNFDHHIAE----GN-HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT--QHRELCSEFQVRG-Y   74 (102)
T ss_pred             eECCHHHHHHHhhc----CC-EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC--CChhhHhhcCCCc-C
Confidence            45678888888842    33 555553322       2222222222221 237999999987  5778999999997 9


Q ss_pred             ceEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770        314 DSLLIFKEDKDRPSASITMNSIPVPTLQDIT  344 (554)
Q Consensus       314 Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi  344 (554)
                      |++++|+++.. .  ..+.|..+...|.+||
T Consensus        75 Pt~~~~~~g~~-~--~~~~G~~~~~~l~~~i  102 (102)
T cd03005          75 PTLLLFKDGEK-V--DKYKGTRDLDSLKEFV  102 (102)
T ss_pred             CEEEEEeCCCe-e--eEeeCCCCHHHHHhhC
Confidence            99999976542 2  3567788888887775

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>PRK15000 peroxidase; Provisional

Probab=97.14  E-value=0.0021  Score=61.27  Aligned_cols=87  Identities=17%  Similarity=0.355  Sum_probs=64.2

Q ss_pred             CCcEEEEEEc-ccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFYS-DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fya-~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      ++++++.||+ +||+.|....+.+.+.+++++..|+.+..|.++.                            +..+++.
T Consensus        34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~  113 (200)
T PRK15000         34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA  113 (200)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence            5689999999 5999999999999999999987677777777663                            2256667


Q ss_pred             hCCc------CCCCcceec-cCCeEEEEe-C---CcccHHHHHHHHHH
Q psy16770        198 LGVG------SQLPQIALL-TDGRTSFFK-E---PSFSVQKMVEFFRL  234 (554)
Q Consensus       198 ~~v~------~~~Pti~~~-~~g~~~~y~-~---g~~~~~~i~~fl~~  234 (554)
                      ||+.      . .|+..++ ++|++.... +   ..++.+++...++.
T Consensus       114 ygv~~~~~g~~-~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a  160 (200)
T PRK15000        114 YGIEHPDEGVA-LRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA  160 (200)
T ss_pred             cCCccCCCCcE-EeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            7776      4 7777777 577764322 2   12577888887764

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=97.12  E-value=0.0029  Score=52.89  Aligned_cols=96  Identities=15%  Similarity=0.140  Sum_probs=62.2

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCc-------hhHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLP-------VRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDK  313 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~-------~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~  313 (554)
                      +..++.+++++.+.+   .++++++.|....-       +.+...+........+.|+.++++.   .+++..+++.+ .
T Consensus         2 v~~l~~~~f~~~i~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~---~~~~~~~~~~~-~   74 (104)
T cd02995           2 VKVVVGKNFDEVVLD---SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA---NDVPSEFVVDG-F   74 (104)
T ss_pred             eEEEchhhhHHHHhC---CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc---hhhhhhccCCC-C
Confidence            456778888887753   34666666643322       2222222222223469999999862   36888899875 9


Q ss_pred             ceEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770        314 DSLLIFKEDKDRPSASITMNSIPVPTLQDIT  344 (554)
Q Consensus       314 Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi  344 (554)
                      |++++|+++... ....+.|..+...|.+||
T Consensus        75 Pt~~~~~~~~~~-~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          75 PTILFFPAGDKS-NPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             CEEEEEcCCCcC-CceEccCCcCHHHHHhhC
Confidence            999999876522 124577888888888775

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.12  E-value=0.0041  Score=51.17  Aligned_cols=92  Identities=14%  Similarity=0.191  Sum_probs=60.0

Q ss_pred             CCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----Hhhcc--CCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        244 LSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKH--RTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       244 ~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~--~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      ++.+++.+.+.+    .++++++|.+...+..+...     .+..+  .+.+.|+.++++  .+..++++|+|.. .|++
T Consensus         3 l~~~~~~~~i~~----~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~i~~-~Pt~   75 (101)
T cd02961           3 LTDDNFDELVKD----SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT--ANNDLCSEYGVRG-YPTI   75 (101)
T ss_pred             ccHHHHHHHHhC----CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc--chHHHHHhCCCCC-CCEE
Confidence            466777777753    33666666544333222211     11134  578999999887  5789999999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDIT  344 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi  344 (554)
                      ++|+++....  ..+.+..+.+.+.+|+
T Consensus        76 ~~~~~~~~~~--~~~~g~~~~~~i~~~~  101 (101)
T cd02961          76 KLFPNGSKEP--VKYEGPRTLESLVEFI  101 (101)
T ss_pred             EEEcCCCccc--ccCCCCcCHHHHHhhC
Confidence            9998764322  3455666666676654

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.11  E-value=0.0033  Score=52.59  Aligned_cols=96  Identities=13%  Similarity=0.176  Sum_probs=62.5

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchh-------HHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVR-------LRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDK  313 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~-------~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~  313 (554)
                      +..+++.++++.++.    .++.++.|....-+.       +......+...+.+.|+.++++...+..++++++|.+ .
T Consensus         2 ~~~l~~~~~~~~~~~----~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~-~   76 (104)
T cd02997           2 VVHLTDEDFRKFLKK----EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKG-F   76 (104)
T ss_pred             eEEechHhHHHHHhh----CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcc-c
Confidence            345677788888753    446666664433222       2222222222366889999998544889999999987 9


Q ss_pred             ceEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770        314 DSLLIFKEDKDRPSASITMNSIPVPTLQDIT  344 (554)
Q Consensus       314 Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi  344 (554)
                      |++++|+++.. .  ..+.|..+.+.+.+||
T Consensus        77 Pt~~~~~~g~~-~--~~~~g~~~~~~l~~~l  104 (104)
T cd02997          77 PTFKYFENGKF-V--EKYEGERTAEDIIEFM  104 (104)
T ss_pred             cEEEEEeCCCe-e--EEeCCCCCHHHHHhhC
Confidence            99999986532 2  3566777777777764

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=97.11  E-value=0.0034  Score=53.49  Aligned_cols=97  Identities=13%  Similarity=0.153  Sum_probs=61.9

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCch-------hHHHHHHhhccCC-ceEEEEEEccCCCChhHHh-HhCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPV-------RLRYLINAFKHRT-TIVFGVIVYDQEDSSSVFQ-RFKVPG  311 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~-------~~~~~~~a~~~~~-~v~Fg~v~~~~~~~~~l~~-k~~i~~  311 (554)
                      |..+|.++++...... ..++++++.|....-+       .+..++  ..+.+ .+.|+.++++. .+..++. .+++..
T Consensus         3 v~~~~~~~~~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~la--~~~~~~~~~~~~vd~d~-~~~~~~~~~~~v~~   78 (109)
T cd02993           3 VVTLSRAEIEALAKGE-RRNQSTLVVLYAPWCPFCQAMEASYEELA--EKLAGSNVKVAKFNADG-EQREFAKEELQLKS   78 (109)
T ss_pred             ceeccHHHHHHHHhhh-hcCCCEEEEEECCCCHHHHHHhHHHHHHH--HHhccCCeEEEEEECCc-cchhhHHhhcCCCc
Confidence            4567788888877532 3456777777433322       222222  23444 58999999873 1456676 599997


Q ss_pred             CCceEEEEeCCCCCCCceeecCC-CChhHHHhHH
Q psy16770        312 DKDSLLIFKEDKDRPSASITMNS-IPVPTLQDIT  344 (554)
Q Consensus       312 ~~Ptlvvfk~~~~~~~~~i~~~~-~~~~~l~~fi  344 (554)
                       .||+++|+++...+  ..+.++ .+...|..||
T Consensus        79 -~Pti~~f~~~~~~~--~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          79 -FPTILFFPKNSRQP--IKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             -CCEEEEEcCCCCCc--eeccCCCCCHHHHHhhC
Confidence             99999998765544  346664 6777787775

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>TIGR01068 thioredoxin thioredoxin

Probab=97.10  E-value=0.0045  Score=51.21  Aligned_cols=94  Identities=16%  Similarity=0.276  Sum_probs=61.7

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEE
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF  319 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvf  319 (554)
                      +.+++.+.+..   ..++++++|.....+..+..     ..+..+.+++.|+.++++  .+..++++|+|.. .|++++|
T Consensus         2 ~~~~~~~~~~~---~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~-~P~~~~~   75 (101)
T TIGR01068         2 TDANFDETIAS---SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD--ENPDIAAKYGIRS-IPTLLLF   75 (101)
T ss_pred             CHHHHHHHHhh---cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC--CCHHHHHHcCCCc-CCEEEEE
Confidence            45667777653   35566666654433222211     112245567999999987  6788999999997 9999999


Q ss_pred             eCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        320 KEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       320 k~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +++..  . ....|..+.+.+.+|++.+
T Consensus        76 ~~g~~--~-~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        76 KNGKE--V-DRSVGALPKAALKQLINKN  100 (101)
T ss_pred             eCCcE--e-eeecCCCCHHHHHHHHHhh
Confidence            76432  1 2345666778899988753

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.10  E-value=0.0015  Score=53.45  Aligned_cols=95  Identities=17%  Similarity=0.210  Sum_probs=70.8

Q ss_pred             cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC--cHHHHHHhCCc----CCCC-c
Q psy16770        134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--EQGLARRLGVG----SQLP-Q  206 (554)
Q Consensus       134 ~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~--~~~l~~~~~v~----~~~P-t  206 (554)
                      .++|.+++.   .+.-+||.|..+--.. ......+.++|+.++|. -.++.|||..  ...||+++.|.    . -| +
T Consensus         9 ~KdfKKLLR---Tr~NVLvLy~ks~k~a-~~~Lk~~~~~A~~vkG~-gT~~~vdCgd~e~kKLCKKlKv~~~~kp-~~~~   82 (112)
T cd03067           9 HKDFKKLLR---TRNNVLVLYSKSAKSA-EALLKLLSDVAQAVKGQ-GTIAWIDCGDSESRKLCKKLKVDPSSKP-KPVE   82 (112)
T ss_pred             hHHHHHHHh---hcCcEEEEEecchhhH-HHHHHHHHHHHHHhcCc-eeEEEEecCChHHHHHHHHHccCCCCCC-Ccch
Confidence            467777773   4456788776554333 33445889999999985 6789999998  78899999998    4 44 3


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHH
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRL  234 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~  234 (554)
                      +.-|++|.....|....+..+++.|++.
T Consensus        83 LkHYKdG~fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          83 LKHYKDGDFHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             hhcccCCCccccccchhhHHHHHHHhhC
Confidence            5667999886666566788999999975

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=97.10  E-value=0.00076  Score=59.36  Aligned_cols=82  Identities=15%  Similarity=0.327  Sum_probs=51.9

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHh---CCcCCCCcceec-cCCeEEEEeCCc
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL---GVGSQLPQIALL-TDGRTSFFKEPS  222 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~---~v~~~~Pti~~~-~~g~~~~y~~g~  222 (554)
                      .+..++-|..+|||.|.+..|.+.++++...  ++.+-.+.-+.+.++..+|   |.. ++|+++++ .+|+.....|.+
T Consensus        41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~~el~~~~lt~g~~-~IP~~I~~d~~~~~lg~wger  117 (129)
T PF14595_consen   41 KPYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRDENKELMDQYLTNGGR-SIPTFIFLDKDGKELGRWGER  117 (129)
T ss_dssp             S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHHHHHTTTTTT-SS---SSEEEEE-TT--EEEEEESS
T ss_pred             CCcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCChhHHHHHHhCCCe-ecCEEEEEcCCCCEeEEEcCC
Confidence            3455666999999999999999999999864  4677777777777777665   556 49999999 567887777664


Q ss_pred             ccHHHHHHHHH
Q psy16770        223 FSVQKMVEFFR  233 (554)
Q Consensus       223 ~~~~~i~~fl~  233 (554)
                        ++.+.+++.
T Consensus       118 --P~~~~~~~~  126 (129)
T PF14595_consen  118 --PKEVQELVD  126 (129)
T ss_dssp             ---HHHH----
T ss_pred             --CHHHhhccc
Confidence              355555443

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.09  E-value=0.001  Score=64.84  Aligned_cols=84  Identities=18%  Similarity=0.264  Sum_probs=60.8

Q ss_pred             CCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEE--------------------------------------
Q psy16770        143 PKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFF--------------------------------------  184 (554)
Q Consensus       143 ~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~--------------------------------------  184 (554)
                      .....+..++.|.-|.|++|+++.++++++.+.    ++.+.                                      
T Consensus       103 g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~  178 (232)
T PRK10877        103 KAPQEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKD  178 (232)
T ss_pred             cCCCCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence            334567789999999999999999888775321    11111                                      


Q ss_pred             ------EEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        185 ------TVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       185 ------~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                            ..+...+..+++++||+| .||++ +.+|+.+   .|..+.+.|.+++.+.
T Consensus       179 ~~~~~c~~~v~~~~~la~~lgi~g-TPtiv-~~~G~~~---~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        179 VSPASCDVDIADHYALGVQFGVQG-TPAIV-LSNGTLV---PGYQGPKEMKAFLDEH  230 (232)
T ss_pred             CCcccccchHHHhHHHHHHcCCcc-ccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence                  112233668999999998 99998 6788765   4667889999988754

>KOG4277|consensus

Probab=97.07  E-value=0.016  Score=56.70  Aligned_cols=137  Identities=12%  Similarity=0.119  Sum_probs=91.3

Q ss_pred             HHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCc
Q psy16770        250 DAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSA  328 (554)
Q Consensus       250 ~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~  328 (554)
                      .+|.++||.+++..        .|-+...-..+ ...--+++|..+++  .-+.++.+|+|.+ +|||.+||.+-.    
T Consensus        48 VdFYAPWC~HCKkL--------ePiWdeVG~elkdig~PikVGKlDaT--~f~aiAnefgiqG-YPTIk~~kgd~a----  112 (468)
T KOG4277|consen   48 VDFYAPWCAHCKKL--------EPIWDEVGHELKDIGLPIKVGKLDAT--RFPAIANEFGIQG-YPTIKFFKGDHA----  112 (468)
T ss_pred             EEeechhhhhcccc--------cchhHHhCcchhhcCCceeecccccc--cchhhHhhhccCC-CceEEEecCCee----
Confidence            34555565555443        34344444444 33456889999988  6889999999998 999999987432    


Q ss_pred             eeecCCCChhHHHhHHhcCCCcccccccc-hhhhhhcCCCCceEEEEEcCCCCcchhHHHHHHHHHhhccCCCCceEEEE
Q psy16770        329 SITMNSIPVPTLQDITDNNPYLTLPRISS-QSMLDAVCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMY  407 (554)
Q Consensus       329 ~i~~~~~~~~~l~~fi~~~~~~~v~~lt~-~~~~~~~c~~~~lcvvl~~~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~  407 (554)
                      +-|.|..+.+.|.+|......+.+..+.+ |-.++.+-..++...|+|..++   ....+.+.+.|.+      .+..++
T Consensus       113 ~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge---~PL~d~fidAASe------~~~~a~  183 (468)
T KOG4277|consen  113 IDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGE---GPLFDAFIDAASE------KFSVAR  183 (468)
T ss_pred             eecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCC---CcHHHHHHHHhhh------heeeee
Confidence            45778889999999999888888888876 5555554322344455554322   3566777777755      355555


Q ss_pred             Eec
Q psy16770        408 VFI  410 (554)
Q Consensus       408 vd~  410 (554)
                      ...
T Consensus       184 FfS  186 (468)
T KOG4277|consen  184 FFS  186 (468)
T ss_pred             eec
Confidence            554

>KOG2603|consensus

Probab=97.07  E-value=0.0021  Score=63.31  Aligned_cols=109  Identities=16%  Similarity=0.249  Sum_probs=86.0

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcc----cccccccchHHHHHHHHHhC-------CCCEEEEEEEecCcHHHH
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSD----WCFACLQVEPIFKKLMDELS-------PLGVGFFTVHVHNEQGLA  195 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~----wC~~C~~l~p~~~~~a~~l~-------~~~v~~~~Vd~~~~~~l~  195 (554)
                      ..++.+++++|.+.+.+...+-..+|+|.|-    .|.-|+.+..+|.-+|....       +.++=|+.||-++.+++-
T Consensus        40 ~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~F  119 (331)
T KOG2603|consen   40 SGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVF  119 (331)
T ss_pred             CCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHH
Confidence            4588999999999998766777788999874    69999999999999987754       224779999999999999


Q ss_pred             HHhCCcCCCCcceeccC--CeE------EEEeCCcccHHHHHHHHHHhCC
Q psy16770        196 RRLGVGSQLPQIALLTD--GRT------SFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       196 ~~~~v~~~~Pti~~~~~--g~~------~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      +.++++. .|++.+|..  |+.      ..+.-|. .+|.+.+|+.++..
T Consensus       120 q~l~ln~-~P~l~~f~P~~~n~~~s~~~d~~~~g~-~Ae~iaqfv~~~tk  167 (331)
T KOG2603|consen  120 QQLNLNN-VPHLVLFSPAKGNKKRSDQMDQQDLGF-EAEQIAQFVADRTK  167 (331)
T ss_pred             HHhcccC-CCeEEEeCCCccccccCccchhhhcch-hHHHHHHHHHHhhh
Confidence            9999997 999999932  221      1222233 47888888887754

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.04  E-value=0.0016  Score=52.93  Aligned_cols=75  Identities=20%  Similarity=0.392  Sum_probs=53.3

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc----HHHHHHhCC--cCCCCcceeccCCeEEEEeCCccc
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE----QGLARRLGV--GSQLPQIALLTDGRTSFFKEPSFS  224 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~----~~l~~~~~v--~~~~Pti~~~~~g~~~~y~~g~~~  224 (554)
                      ++.|..+||++|.++...++++..+..  ++.+..+|...+    ..+.+..|-  .+ +|++.  .+|+.   .||.  
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~~~~~~~~~l~~~~g~~~~t-VP~if--i~g~~---igG~--   71 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIHAEGISKADLEKTVGKPVET-VPQIF--VDEKH---VGGC--   71 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECCCCHHHHHHHHHHhCCCCCC-cCeEE--ECCEE---ecCH--
Confidence            677999999999998887776654432  467777887753    356666664  65 99984  46643   4664  


Q ss_pred             HHHHHHHHHHhC
Q psy16770        225 VQKMVEFFRLKL  236 (554)
Q Consensus       225 ~~~i~~fl~~~~  236 (554)
                       ++|.+++++..
T Consensus        72 -~dl~~~~~~~~   82 (86)
T TIGR02183        72 -TDFEQLVKENF   82 (86)
T ss_pred             -HHHHHHHHhcc
Confidence             88888887754

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=97.00  E-value=0.0026  Score=56.50  Aligned_cols=45  Identities=22%  Similarity=0.370  Sum_probs=37.6

Q ss_pred             CCCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC
Q psy16770        146 YTTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN  190 (554)
Q Consensus       146 ~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~  190 (554)
                      .+++++|.|| +.||+.|....|.+.++.+.++..++.+..|..+.
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~   66 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS   66 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            3568899999 78999999999999999999865568888887654

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=97.00  E-value=0.008  Score=49.60  Aligned_cols=90  Identities=16%  Similarity=0.161  Sum_probs=58.2

Q ss_pred             cHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCC
Q psy16770        248 NVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKED  322 (554)
Q Consensus       248 ~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~  322 (554)
                      ++++.+..  ...+++++.|....-++.+..     ..+..+.+.+.|+.++++  ....++++|+|.+ .|++++|+++
T Consensus         2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~l~~~~~i~~-~Pt~~~~~~g   76 (96)
T cd02956           2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD--AQPQIAQQFGVQA-LPTVYLFAAG   76 (96)
T ss_pred             ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc--CCHHHHHHcCCCC-CCEEEEEeCC
Confidence            45555532  235677776644433222211     112245567889999987  6889999999997 9999999854


Q ss_pred             CCCCCceeecCCCChhHHHhHHh
Q psy16770        323 KDRPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       323 ~~~~~~~i~~~~~~~~~l~~fi~  345 (554)
                      ..  . ....|..+.+.|.+|++
T Consensus        77 ~~--~-~~~~g~~~~~~l~~~l~   96 (96)
T cd02956          77 QP--V-DGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             EE--e-eeecCCCCHHHHHHHhC
Confidence            22  1 24667777888888763

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PRK10996 thioredoxin 2; Provisional

Probab=97.00  E-value=0.0058  Score=54.58  Aligned_cols=95  Identities=14%  Similarity=0.209  Sum_probs=64.8

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEE
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLL  317 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlv  317 (554)
                      ..+.+++++.+.    .++++++.|....-+..+..     ..+.++.+.+.|+.++.+  .+.+++++|+|.+ .|+++
T Consensus        39 ~~~~~~~~~~i~----~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~--~~~~l~~~~~V~~-~Ptli  111 (139)
T PRK10996         39 NATGETLDKLLQ----DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE--AERELSARFRIRS-IPTIM  111 (139)
T ss_pred             EcCHHHHHHHHh----CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC--CCHHHHHhcCCCc-cCEEE
Confidence            346667777663    46777777755444332221     112245677999999887  6889999999997 99999


Q ss_pred             EEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        318 IFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       318 vfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +|+++..  . ....|.++.+.|.+|++..
T Consensus       112 i~~~G~~--v-~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        112 IFKNGQV--V-DMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             EEECCEE--E-EEEcCCCCHHHHHHHHHHh
Confidence            9985332  1 2446778888899998753

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=96.98  E-value=0.0058  Score=51.01  Aligned_cols=90  Identities=12%  Similarity=0.065  Sum_probs=60.9

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCc-------hhHHHHHHhhccC-CceEEEEEEccCCCChhHHhHhCCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLP-------VRLRYLINAFKHR-TTIVFGVIVYDQEDSSSVFQRFKVPGD  312 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~-------~~~~~~~~a~~~~-~~v~Fg~v~~~~~~~~~l~~k~~i~~~  312 (554)
                      +..++.+++++.+.     +.+ ++.|...--       +.+..++.  .+. ..+.|+.++++  .+..++++|+|.+ 
T Consensus         3 v~~l~~~~f~~~~~-----~~~-lv~f~a~wC~~C~~~~p~~~~l~~--~~~~~~v~~~~vd~~--~~~~~~~~~~i~~-   71 (101)
T cd02994           3 VVELTDSNWTLVLE-----GEW-MIEFYAPWCPACQQLQPEWEEFAD--WSDDLGINVAKVDVT--QEPGLSGRFFVTA-   71 (101)
T ss_pred             eEEcChhhHHHHhC-----CCE-EEEEECCCCHHHHHHhHHHHHHHH--hhccCCeEEEEEEcc--CCHhHHHHcCCcc-
Confidence            45677888888763     234 455533222       22222222  222 36899999987  6788999999997 


Q ss_pred             CceEEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770        313 KDSLLIFKEDKDRPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       313 ~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~  345 (554)
                      .||+++|+++.  .  ..+.|..+.+.|.+|++
T Consensus        72 ~Pt~~~~~~g~--~--~~~~G~~~~~~l~~~i~  100 (101)
T cd02994          72 LPTIYHAKDGV--F--RRYQGPRDKEDLISFIE  100 (101)
T ss_pred             cCEEEEeCCCC--E--EEecCCCCHHHHHHHHh
Confidence            99999997653  2  35678888889998886

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>KOG0912|consensus

Probab=96.97  E-value=0.0057  Score=60.02  Aligned_cols=112  Identities=14%  Similarity=0.257  Sum_probs=78.8

Q ss_pred             CCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccccccchhhhhhc
Q psy16770        285 RTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAV  364 (554)
Q Consensus       285 ~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~  364 (554)
                      .+++.+|.|+|+  ....++.+|.|++ +||+.+|+.+.-..  .-|-|..+.++|.+||+...--++.++.+.+..+..
T Consensus        48 ~~kvvwg~VDcd--~e~~ia~ky~I~K-yPTlKvfrnG~~~~--rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~  122 (375)
T KOG0912|consen   48 EGKVVWGKVDCD--KEDDIADKYHINK-YPTLKVFRNGEMMK--REYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNL  122 (375)
T ss_pred             CcceEEEEcccc--hhhHHhhhhcccc-Cceeeeeeccchhh--hhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhh
Confidence            378999999998  6889999999997 99999999754322  236677788999999998877778888777666554


Q ss_pred             C-CCCceEEEEEcCCCCcchhHHHHHHHHHhhccCCCCceEEEE
Q psy16770        365 C-PVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMY  407 (554)
Q Consensus       365 c-~~~~lcvvl~~~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~  407 (554)
                      - |.++. ||...+.. + ....+.++++|..  ++++ ..|..
T Consensus       123 ~~p~K~~-vIgyF~~k-d-spey~~~~kva~~--lr~d-c~f~V  160 (375)
T KOG0912|consen  123 DIPSKRT-VIGYFPSK-D-SPEYDNLRKVASL--LRDD-CVFLV  160 (375)
T ss_pred             hccccce-EEEEeccC-C-CchHHHHHHHHHH--Hhhc-cEEEe
Confidence            4 33444 44444432 2 2445678888876  6543 44443

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=96.97  E-value=0.012  Score=59.12  Aligned_cols=159  Identities=14%  Similarity=0.188  Sum_probs=98.0

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecC-CchhHH---------HHHHhh--ccCCceEEEEEEccCCCChhHHhHhC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRS-LPVRLR---------YLINAF--KHRTTIVFGVIVYDQEDSSSVFQRFK  308 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~-~~~~~~---------~~~~a~--~~~~~v~Fg~v~~~~~~~~~l~~k~~  308 (554)
                      |..+|+.|+.+.+.+    ...++++|... .+....         .+.+++  .-+..+.||.|+..  .+..+++++|
T Consensus        36 Vi~LneKNfk~~lKk----yd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~--Kd~klAKKLg  109 (383)
T PF01216_consen   36 VIDLNEKNFKRALKK----YDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSK--KDAKLAKKLG  109 (383)
T ss_dssp             CEEE-TTTHHHHHHH-----SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETT--TTHHHHHHHT
T ss_pred             eEEcchhHHHHHHHh----hcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccH--HHHHHHHhcC
Confidence            567789999998864    55666666432 221111         112233  23578999999876  7899999999


Q ss_pred             CCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccccccchhh---hhhcCCCCceEEEEEcCCCCcchhH
Q psy16770        309 VPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSM---LDAVCPVKKLCVVLFSEDSPEHDAS  385 (554)
Q Consensus       309 i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~~---~~~~c~~~~lcvvl~~~~~~~~~~~  385 (554)
                      +.. .++|.+|+++..    +-+.|.++..+|..||-.---.++..+++...   |+..-  ...-||.+..+.  ..++
T Consensus       110 v~E-~~SiyVfkd~~~----IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ie--d~~klIGyFk~~--~s~~  180 (383)
T PF01216_consen  110 VEE-EGSIYVFKDGEV----IEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIE--DDIKLIGYFKSE--DSEH  180 (383)
T ss_dssp             --S-TTEEEEEETTEE----EEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH----SS-EEEEE-SST--TSHH
T ss_pred             ccc-cCcEEEEECCcE----EEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcc--cceeEEEEeCCC--CcHH
Confidence            997 899999997533    45789999999999997654455666666433   44432  234566665543  2358


Q ss_pred             HHHHHHHHhhccCCCCceEEEEEecccchHHHHhh
Q psy16770        386 RHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNAL  420 (554)
Q Consensus       386 ~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~  420 (554)
                      ..+|.++|..  |.. .++|.-+.-   +.++..+
T Consensus       181 yk~FeeAAe~--F~p-~IkFfAtfd---~~vAk~L  209 (383)
T PF01216_consen  181 YKEFEEAAEH--FQP-YIKFFATFD---KKVAKKL  209 (383)
T ss_dssp             HHHHHHHHHH--CTT-TSEEEEE-S---HHHHHHH
T ss_pred             HHHHHHHHHh--hcC-ceeEEEEec---chhhhhc
Confidence            8899999999  853 477766543   5566666

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.97  E-value=0.0018  Score=48.62  Aligned_cols=55  Identities=20%  Similarity=0.469  Sum_probs=41.2

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHH----HHHhCCcCCCCcceeccCCeE
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGL----ARRLGVGSQLPQIALLTDGRT  215 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l----~~~~~v~~~~Pti~~~~~g~~  215 (554)
                      ++.|..+||++|++....++       ..|+.+..+|.+.++..    .+..|..+ +|++.+  +|+.
T Consensus         1 V~vy~~~~C~~C~~~~~~L~-------~~~i~y~~~dv~~~~~~~~~l~~~~g~~~-~P~v~i--~g~~   59 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLD-------EKGIPYEEVDVDEDEEAREELKELSGVRT-VPQVFI--DGKF   59 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHH-------HTTBEEEEEEGGGSHHHHHHHHHHHSSSS-SSEEEE--TTEE
T ss_pred             cEEEEcCCCcCHHHHHHHHH-------HcCCeeeEcccccchhHHHHHHHHcCCCc-cCEEEE--CCEE
Confidence            46799999999998776663       33688999999987543    33449897 999876  6654

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=96.92  E-value=0.0032  Score=54.37  Aligned_cols=88  Identities=14%  Similarity=0.154  Sum_probs=65.6

Q ss_pred             CCCCCcEEEEEEcc----cccccccc--hHHHHHHHHHhCCCCEEEEEEEecC--cHHHHHHhCCcCCCCcceec--cCC
Q psy16770        144 KSYTTPHLILFYSD----WCFACLQV--EPIFKKLMDELSPLGVGFFTVHVHN--EQGLARRLGVGSQLPQIALL--TDG  213 (554)
Q Consensus       144 ~~~~~~~lV~Fya~----wC~~C~~l--~p~~~~~a~~l~~~~v~~~~Vd~~~--~~~l~~~~~v~~~~Pti~~~--~~g  213 (554)
                      ++..++.+|.+|+|    ||..|+..  .|...   +-++. ++.+...|++.  ..+++..+++.+ ||++.++  +++
T Consensus        14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~---~~ln~-~fv~w~~dv~~~eg~~la~~l~~~~-~P~~~~l~~~~~   88 (116)
T cd02991          14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVI---EYINT-RMLFWACSVAKPEGYRVSQALRERT-YPFLAMIMLKDN   88 (116)
T ss_pred             HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHH---HHHHc-CEEEEEEecCChHHHHHHHHhCCCC-CCEEEEEEecCC
Confidence            35788999999999    89999764  34443   44444 48888888875  357899999997 9999888  233


Q ss_pred             --eEEEEeCCcccHHHHHHHHHHhC
Q psy16770        214 --RTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       214 --~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                        ..+....|..++++++..+....
T Consensus        89 ~~~vv~~i~G~~~~~~ll~~L~~~~  113 (116)
T cd02991          89 RMTIVGRLEGLIQPEDLINRLTFIM  113 (116)
T ss_pred             ceEEEEEEeCCCCHHHHHHHHHHHH
Confidence              34556667789999998887653

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=96.91  E-value=0.0056  Score=60.46  Aligned_cols=88  Identities=22%  Similarity=0.343  Sum_probs=64.0

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      ++++++.|| +.||+.|....|.+.+..++++..|+.+..|.++.                            +..+|+.
T Consensus        98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka  177 (261)
T PTZ00137         98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS  177 (261)
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence            346777777 89999999999999999999976677776666543                            2468888


Q ss_pred             hCCc-----CCCCcceec-cCCeEEEEe----CCcccHHHHHHHHHHh
Q psy16770        198 LGVG-----SQLPQIALL-TDGRTSFFK----EPSFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~-----~~~Pti~~~-~~g~~~~y~----~g~~~~~~i~~fl~~~  235 (554)
                      ||+.     . .|+..++ ++|++....    ...++.+++...+...
T Consensus       178 yGv~~~~g~a-~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        178 FGLLRDEGFS-HRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             cCCCCcCCce-ecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            8884     3 6888888 578764322    2235888888877643

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.91  E-value=0.003  Score=69.94  Aligned_cols=79  Identities=22%  Similarity=0.281  Sum_probs=64.7

Q ss_pred             CCcEEE-EEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccH
Q psy16770        147 TTPHLI-LFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSV  225 (554)
Q Consensus       147 ~~~~lV-~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~  225 (554)
                      ++++-| .|++++|++|.+....+++++.+..  ++..-.||++..++++++|+|.+ +|++++  ||+.. +.|. .+.
T Consensus       475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~~~~~~~~~v~~-vP~~~i--~~~~~-~~G~-~~~  547 (555)
T TIGR03143       475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHFPDLKDEYGIMS-VPAIVV--DDQQV-YFGK-KTI  547 (555)
T ss_pred             CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECcccHHHHHhCCcee-cCEEEE--CCEEE-EeeC-CCH
Confidence            345544 5689999999999999999998864  58999999999999999999997 999887  66644 4454 488


Q ss_pred             HHHHHHH
Q psy16770        226 QKMVEFF  232 (554)
Q Consensus       226 ~~i~~fl  232 (554)
                      ++|++++
T Consensus       548 ~~~~~~~  554 (555)
T TIGR03143       548 EEMLELI  554 (555)
T ss_pred             HHHHHhh
Confidence            9998876

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK09381 trxA thioredoxin; Provisional

Probab=96.91  E-value=0.0082  Score=50.90  Aligned_cols=98  Identities=14%  Similarity=0.201  Sum_probs=65.5

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++.+.+..   .+++.++.|....-+..+..     ..+..+.+.+.|+.++++  ....++++|++.. .|+
T Consensus         5 v~~~~~~~~~~~v~~---~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~-~Pt   78 (109)
T PRK09381          5 IIHLTDDSFDTDVLK---ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID--QNPGTAPKYGIRG-IPT   78 (109)
T ss_pred             ceeeChhhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECC--CChhHHHhCCCCc-CCE
Confidence            455666777765532   35666776644433322222     223356677999999987  6788999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +++|+++...   ....|..+...|..||..+
T Consensus        79 ~~~~~~G~~~---~~~~G~~~~~~l~~~i~~~  107 (109)
T PRK09381         79 LLLFKNGEVA---ATKVGALSKGQLKEFLDAN  107 (109)
T ss_pred             EEEEeCCeEE---EEecCCCCHHHHHHHHHHh
Confidence            9999764321   2345667788888888754

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=96.91  E-value=0.0008  Score=61.09  Aligned_cols=71  Identities=21%  Similarity=0.411  Sum_probs=49.0

Q ss_pred             CCCCcEEEEEEcccccccccchH-HH--HHHHHHhCCCCEEEEEEEecCcHHHHHHh--------CCcCCCCcceec-cC
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEP-IF--KKLMDELSPLGVGFFTVHVHNEQGLARRL--------GVGSQLPQIALL-TD  212 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p-~~--~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~--------~v~~~~Pti~~~-~~  212 (554)
                      ..+++++|.++++||+-|+.|+. .|  .++++.+.. .+.-++||.++.+++...|        |..| +|+.+++ .+
T Consensus        35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~Pdid~~y~~~~~~~~~~gG-wPl~vfltPd  112 (163)
T PF03190_consen   35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREERPDIDKIYMNAVQAMSGSGG-WPLTVFLTPD  112 (163)
T ss_dssp             HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT-HHHHHHHHHHHHHHHS----SSEEEEE-TT
T ss_pred             hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccCccHHHHHHHHHHHhcCCCC-CCceEEECCC
Confidence            57889999999999999998875 33  356777765 3788899999999999888        7777 9998887 67


Q ss_pred             CeEEE
Q psy16770        213 GRTSF  217 (554)
Q Consensus       213 g~~~~  217 (554)
                      |+++.
T Consensus       113 g~p~~  117 (163)
T PF03190_consen  113 GKPFF  117 (163)
T ss_dssp             S-EEE
T ss_pred             CCeee
Confidence            77643

; PDB: 3IRA_A.

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.90  E-value=0.0032  Score=52.17  Aligned_cols=80  Identities=18%  Similarity=0.235  Sum_probs=62.2

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCC--eEEEEeCCc
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG--RTSFFKEPS  222 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g--~~~~y~~g~  222 (554)
                      ..+++++|-|+.++|+   .....|.++|+.+++ .+.|+.+.   +..++.++++.  -|++++|++.  ....|.|..
T Consensus        15 ~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~---~~~~~~~~~~~--~~~i~l~~~~~~~~~~y~g~~   85 (97)
T cd02981          15 DKDDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTS---DKEVAKKLKVK--PGSVVLFKPFEEEPVEYDGEF   85 (97)
T ss_pred             ccCCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEC---hHHHHHHcCCC--CCceEEeCCcccCCccCCCCC
Confidence            4677899999999887   567789999999976 37887666   56788888875  5999999763  445676554


Q ss_pred             ccHHHHHHHHHH
Q psy16770        223 FSVQKMVEFFRL  234 (554)
Q Consensus       223 ~~~~~i~~fl~~  234 (554)
                       +.++|.+|+..
T Consensus        86 -~~~~l~~fi~~   96 (97)
T cd02981          86 -TEESLVEFIKD   96 (97)
T ss_pred             -CHHHHHHHHHh
Confidence             67999999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>KOG3425|consensus

Probab=96.88  E-value=0.00089  Score=56.48  Aligned_cols=76  Identities=21%  Similarity=0.460  Sum_probs=55.7

Q ss_pred             ccccccccCCCCCCcEEEEEEc--------ccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-------HHHHHHhC
Q psy16770        135 WNFEKNYIPKSYTTPHLILFYS--------DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-------QGLARRLG  199 (554)
Q Consensus       135 ~~F~~~v~~~~~~~~~lV~Fya--------~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-------~~l~~~~~  199 (554)
                      +.|++.+..-.+++.++|.|++        +||+.|.+.+|.+.++-+.... ++.|+.|+++.-       .......+
T Consensus        13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~rp~Wk~p~n~FR~d~~   91 (128)
T KOG3425|consen   13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGNRPYWKDPANPFRKDPG   91 (128)
T ss_pred             HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecCCCcccCCCCccccCCC
Confidence            4555555443345558899986        5999999999999999885544 699999999873       34455556


Q ss_pred             C-cCCCCcceeccC
Q psy16770        200 V-GSQLPQIALLTD  212 (554)
Q Consensus       200 v-~~~~Pti~~~~~  212 (554)
                      + .+ +||++=+++
T Consensus        92 ~lt~-vPTLlrw~~  104 (128)
T KOG3425|consen   92 ILTA-VPTLLRWKR  104 (128)
T ss_pred             ceee-cceeeEEcC
Confidence            6 76 999887764

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.85  E-value=0.0023  Score=60.85  Aligned_cols=84  Identities=23%  Similarity=0.273  Sum_probs=55.2

Q ss_pred             CCCCCcEEEEEEcccccccccchHHHHHHH--------------------------------HHh----CCCC----EEE
Q psy16770        144 KSYTTPHLILFYSDWCFACLQVEPIFKKLM--------------------------------DEL----SPLG----VGF  183 (554)
Q Consensus       144 ~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a--------------------------------~~l----~~~~----v~~  183 (554)
                      ....++.++.|..+.|++|+++.+.+.+..                                +.+    .+..    ...
T Consensus        74 ~~~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~  153 (197)
T cd03020          74 KGNGKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS  153 (197)
T ss_pred             CCCCCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence            345678999999999999999988776410                                000    0000    111


Q ss_pred             EEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHH
Q psy16770        184 FTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       184 ~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl  232 (554)
                      ...+..++..+++++||++ .|+++ +.+|+.+   .|..+.+.|.+++
T Consensus       154 ~~~~i~~~~~l~~~~gi~g-tPtii-~~~G~~~---~G~~~~~~l~~~L  197 (197)
T cd03020         154 CDNPVAANLALGRQLGVNG-TPTIV-LADGRVV---PGAPPAAQLEALL  197 (197)
T ss_pred             cCchHHHHHHHHHHcCCCc-ccEEE-ECCCeEe---cCCCCHHHHHhhC
Confidence            2223334668999999998 99997 7788753   3555677776653

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>KOG0910|consensus

Probab=96.83  E-value=0.005  Score=54.73  Aligned_cols=97  Identities=10%  Similarity=0.099  Sum_probs=65.7

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCC-ch----hHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSL-PV----RLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~-~~----~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      ....+.+++++.+.+   ...|+++-|...- .|    ..+.-..+..+.+.++|+.++.+  ++.+++.+|+|.. .||
T Consensus        45 ~~~~s~~~~~~~Vi~---S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD--~~~ela~~Y~I~a-vPt  118 (150)
T KOG0910|consen   45 FNVQSDSEFDDKVIN---SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTD--EHPELAEDYEISA-VPT  118 (150)
T ss_pred             ccccCHHHHHHHHHc---cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccc--cccchHhhcceee-eeE
Confidence            345567777776654   4666666553221 11    11122223356899999999988  7899999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|++++...   ...|-.+...|.+||+.
T Consensus       119 vlvfknGe~~d---~~vG~~~~~~l~~~i~k  146 (150)
T KOG0910|consen  119 VLVFKNGEKVD---RFVGAVPKEQLRSLIKK  146 (150)
T ss_pred             EEEEECCEEee---eecccCCHHHHHHHHHH
Confidence            99999865531   34566777778888764

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=96.82  E-value=0.0048  Score=49.26  Aligned_cols=70  Identities=19%  Similarity=0.430  Sum_probs=49.3

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc---HHHHHHhCCcCCCCcceeccCCeEEEEeCCcc
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE---QGLARRLGVGSQLPQIALLTDGRTSFFKEPSF  223 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~---~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~  223 (554)
                      ++.-++.|..+||++|.+....+++       .|+.+-.+|++++   ..+.+..|... +|.+.+  +|+   +.||. 
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~~~~~~~~~~~~~g~~~-vP~i~i--~g~---~igG~-   71 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLGNDARGRSLRAVTGATT-VPQVFI--GGK---LIGGS-   71 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECCCChHHHHHHHHHCCCC-cCeEEE--CCE---EEcCH-
Confidence            3445778999999999987766652       3677878888776   34555668886 999854  674   34554 


Q ss_pred             cHHHHHHHH
Q psy16770        224 SVQKMVEFF  232 (554)
Q Consensus       224 ~~~~i~~fl  232 (554)
                        ++|.+|+
T Consensus        72 --~~l~~~l   78 (79)
T TIGR02190        72 --DELEAYL   78 (79)
T ss_pred             --HHHHHHh
Confidence              6777665

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=96.81  E-value=0.0041  Score=53.23  Aligned_cols=101  Identities=20%  Similarity=0.148  Sum_probs=73.5

Q ss_pred             ccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHH---hCCCCEEEEEEEecCcHHHHHHhCCcC-CCCc
Q psy16770        131 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDE---LSPLGVGFFTVHVHNEQGLARRLGVGS-QLPQ  206 (554)
Q Consensus       131 ~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~---l~~~~v~~~~Vd~~~~~~l~~~~~v~~-~~Pt  206 (554)
                      ++|.+++....   .+..+..+.|+.+  ..-..+.+.+.++|+.   +++. +.|+.+|.+......+.+|+++ .+|.
T Consensus         3 e~t~e~~~~~~---~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgk-i~Fv~~d~~~~~~~~~~fgl~~~~~P~   76 (111)
T cd03072           3 EITFENAEELT---EEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGA-INFLTADGDKFRHPLLHLGKTPADLPV   76 (111)
T ss_pred             ccccccHHHHh---cCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCce-EEEEEEechHhhhHHHHcCCCHhHCCE
Confidence            46667776555   3455666666622  2235688899999999   8874 9999999999888999999995 4899


Q ss_pred             ceeccCCeEEEE--eCCcccHHHHHHHHHHhCC
Q psy16770        207 IALLTDGRTSFF--KEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       207 i~~~~~g~~~~y--~~g~~~~~~i~~fl~~~~~  237 (554)
                      +.+........|  ..+..+.++|.+|+.+.+.
T Consensus        77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             EEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence            988854332233  3455688999999987653

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.0089  Score=58.98  Aligned_cols=100  Identities=15%  Similarity=0.117  Sum_probs=72.6

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..+|+.||+.-+... +..+|+++.|-..-..+.+.+     ..+..+++.+.++.++|+  .++.++.+|+|.+ .||
T Consensus        25 I~dvT~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D--~~p~vAaqfgiqs-IPt  100 (304)
T COG3118          25 IKDVTEANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCD--AEPMVAAQFGVQS-IPT  100 (304)
T ss_pred             ceechHhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCC--cchhHHHHhCcCc-CCe
Confidence            5677888988766543 456577776643333322222     123367999999999998  7999999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +++|+++  .|++ -+.|..+.+.|.+|+...
T Consensus       101 V~af~dG--qpVd-gF~G~qPesqlr~~ld~~  129 (304)
T COG3118         101 VYAFKDG--QPVD-GFQGAQPESQLRQFLDKV  129 (304)
T ss_pred             EEEeeCC--cCcc-ccCCCCcHHHHHHHHHHh
Confidence            9999974  3432 356777888999999876

>PRK13599 putative peroxiredoxin; Provisional

Probab=96.75  E-value=0.0062  Score=58.64  Aligned_cols=86  Identities=13%  Similarity=0.229  Sum_probs=63.1

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------------cHHHHHHhCCc
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------------EQGLARRLGVG  201 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------------~~~l~~~~~v~  201 (554)
                      .+|+.|+++||+.|....+.+.+++++++..|+.+..|.++.                           +..+++.||+.
T Consensus        31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~  110 (215)
T PRK13599         31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI  110 (215)
T ss_pred             EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence            356789999999999999999999999976678887777664                           23577788873


Q ss_pred             -------CCCCcceec-cCCeEE--EEe--CCcccHHHHHHHHHHh
Q psy16770        202 -------SQLPQIALL-TDGRTS--FFK--EPSFSVQKMVEFFRLK  235 (554)
Q Consensus       202 -------~~~Pti~~~-~~g~~~--~y~--~g~~~~~~i~~fl~~~  235 (554)
                             . .|+..++ .+|++.  .++  ...+..++|...+...
T Consensus       111 ~~~~~~~~-~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        111 HPGKGTNT-VRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             ccCCCCce-eeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence                   4 6888887 577753  222  1125778888887653

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=96.75  E-value=0.0072  Score=57.71  Aligned_cols=86  Identities=15%  Similarity=0.220  Sum_probs=61.7

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------------cHHHHHHhCCc
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------------EQGLARRLGVG  201 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------------~~~l~~~~~v~  201 (554)
                      .+|+.|+++||+.|....+.+.+++++++..|+.+..|.++.                           +..+++.||+.
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~  107 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI  107 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence            456688999999999999999999999987778888877653                           24678888876


Q ss_pred             ----CCCC----cceec-cCCeEEEEe-C---CcccHHHHHHHHHHh
Q psy16770        202 ----SQLP----QIALL-TDGRTSFFK-E---PSFSVQKMVEFFRLK  235 (554)
Q Consensus       202 ----~~~P----ti~~~-~~g~~~~y~-~---g~~~~~~i~~fl~~~  235 (554)
                          + .|    +..++ .+|++.... +   ..++.+++...+...
T Consensus       108 ~~~~~-~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l  153 (203)
T cd03016         108 DPDAG-STLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL  153 (203)
T ss_pred             cccCC-CCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence                2 33    35555 677764322 2   124778888877654

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.62  E-value=0.0049  Score=49.26  Aligned_cols=69  Identities=14%  Similarity=0.386  Sum_probs=46.1

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-H----HHHHHhCCcCCCCcceeccCCeEEEEeCCcccH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-Q----GLARRLGVGSQLPQIALLTDGRTSFFKEPSFSV  225 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-~----~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~  225 (554)
                      ++.|+++||++|+.+.+.++++..     .+.+..++...+ .    .+.+..|+.+ +|++  |.+|+.   .||.   
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~g~~~-~P~v--~~~g~~---igg~---   67 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQELTGQRT-VPNV--FIGGKF---IGGC---   67 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHHHHhCCCC-CCeE--EECCEE---EcCH---
Confidence            577999999999999888886543     355666666554 2    3445668886 9986  556754   4553   


Q ss_pred             HHHHHHHH
Q psy16770        226 QKMVEFFR  233 (554)
Q Consensus       226 ~~i~~fl~  233 (554)
                      +++++..+
T Consensus        68 ~~~~~~~~   75 (82)
T cd03419          68 DDLMALHK   75 (82)
T ss_pred             HHHHHHHH
Confidence            55555544

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.62  E-value=0.0069  Score=66.48  Aligned_cols=85  Identities=13%  Similarity=0.167  Sum_probs=68.4

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ  226 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~  226 (554)
                      +..-+-.|++++|++|......+.+++..- + .+..-.||+...++++.+|+|.+ +|++++  +|+. .+. |..+.+
T Consensus       116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~-~-~i~~~~id~~~~~~~~~~~~v~~-VP~~~i--~~~~-~~~-g~~~~~  188 (517)
T PRK15317        116 GDFHFETYVSLSCHNCPDVVQALNLMAVLN-P-NITHTMIDGALFQDEVEARNIMA-VPTVFL--NGEE-FGQ-GRMTLE  188 (517)
T ss_pred             CCeEEEEEEcCCCCCcHHHHHHHHHHHHhC-C-CceEEEEEchhCHhHHHhcCCcc-cCEEEE--CCcE-EEe-cCCCHH
Confidence            345588899999999999999998888853 3 58999999999999999999997 999965  6653 344 445778


Q ss_pred             HHHHHHHHhCCC
Q psy16770        227 KMVEFFRLKLPY  238 (554)
Q Consensus       227 ~i~~fl~~~~~~  238 (554)
                      ++++.+.+..++
T Consensus       189 ~~~~~~~~~~~~  200 (517)
T PRK15317        189 EILAKLDTGAAA  200 (517)
T ss_pred             HHHHHHhccccc
Confidence            898888776553

>PRK13189 peroxiredoxin; Provisional

Probab=96.57  E-value=0.0098  Score=57.62  Aligned_cols=86  Identities=15%  Similarity=0.242  Sum_probs=59.9

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------------cHHHHHHhCCc
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------------EQGLARRLGVG  201 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------------~~~l~~~~~v~  201 (554)
                      .+|+.|+++||+.|....+.+.+.+++++..++.+..|.++.                           +..+++.||+.
T Consensus        38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~  117 (222)
T PRK13189         38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMI  117 (222)
T ss_pred             EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCC
Confidence            455677899999999999999999999876677777776553                           23567788865


Q ss_pred             C------CCCcceec-cCCeEEEEe-----CCcccHHHHHHHHHHh
Q psy16770        202 S------QLPQIALL-TDGRTSFFK-----EPSFSVQKMVEFFRLK  235 (554)
Q Consensus       202 ~------~~Pti~~~-~~g~~~~y~-----~g~~~~~~i~~fl~~~  235 (554)
                      .      ..|+..++ .+|.+....     .| ++.+++...+...
T Consensus       118 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~g-r~~~eilr~l~al  162 (222)
T PRK13189        118 SPGKGTNTVRAVFIIDPKGIIRAILYYPQEVG-RNMDEILRLVKAL  162 (222)
T ss_pred             ccccCCCceeEEEEECCCCeEEEEEecCCCCC-CCHHHHHHHHHHh
Confidence            1      15666666 577653221     23 4778887777644

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=96.54  E-value=0.019  Score=48.22  Aligned_cols=84  Identities=13%  Similarity=0.141  Sum_probs=55.1

Q ss_pred             cCCceEEEEEecCCchhHHHHH--------HhhccCCceEEEEEEccCCC--ChhHHhHhCCCCCCceEEEEeC-CCCCC
Q psy16770        258 EDNKVHALLFQRSLPVRLRYLI--------NAFKHRTTIVFGVIVYDQED--SSSVFQRFKVPGDKDSLLIFKE-DKDRP  326 (554)
Q Consensus       258 ~~~~~~v~~f~~~~~~~~~~~~--------~a~~~~~~v~Fg~v~~~~~~--~~~l~~k~~i~~~~Ptlvvfk~-~~~~~  326 (554)
                      ..++++++.|....-+..+.+.        .+..+.+++.+..++++...  ..+++++|+|.+ .||+++|++ +...+
T Consensus         9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~-~Pti~~~~~~~g~~~   87 (104)
T cd02953           9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFG-PPTYLFYGPGGEPEP   87 (104)
T ss_pred             HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCC-CCEEEEECCCCCCCC
Confidence            3577888777554333333222        11234458889999876322  468999999997 999999986 34433


Q ss_pred             CceeecCCCChhHHHhHH
Q psy16770        327 SASITMNSIPVPTLQDIT  344 (554)
Q Consensus       327 ~~~i~~~~~~~~~l~~fi  344 (554)
                        ....|.++...|.++|
T Consensus        88 --~~~~G~~~~~~l~~~l  103 (104)
T cd02953          88 --LRLPGFLTADEFLEAL  103 (104)
T ss_pred             --cccccccCHHHHHHHh
Confidence              3456777887777765

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=96.53  E-value=0.0046  Score=55.28  Aligned_cols=43  Identities=14%  Similarity=0.171  Sum_probs=37.1

Q ss_pred             CCcEEEEEEccc-ccccccchHHHHHHHHHhCCCCEEEEEEEecCc
Q psy16770        147 TTPHLILFYSDW-CFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE  191 (554)
Q Consensus       147 ~~~~lV~Fya~w-C~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~  191 (554)
                      ++++++.||+.| |++|+...|.+.++.++++  ++.+..|+.+..
T Consensus        26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~   69 (143)
T cd03014          26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLP   69 (143)
T ss_pred             CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCH
Confidence            468999999998 6999999999999999985  588888887653

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>KOG3192|consensus

Probab=96.53  E-value=0.0027  Score=56.04  Aligned_cols=67  Identities=22%  Similarity=0.389  Sum_probs=53.5

Q ss_pred             CCCCcccccCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC------hhHHHHHHHHHHHHHHcCChHHHHhhhcc
Q psy16770         17 VSLDPYETLGVPR--TASLQEIRKNYKRLVVEWHPDKNND------PTAQEKFLQLTEAYNILSDAERRKQYDLF   83 (554)
Q Consensus        17 ~~~d~y~~Lgv~~--~a~~~~ik~ay~~l~~~~hPd~~~~------~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~   83 (554)
                      ...++|.++|...  ..++.-++.-|.--+++.|||+...      .-|.+.-.++++||.+|.||-+|+.|=..
T Consensus         6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilk   80 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLK   80 (168)
T ss_pred             hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3567899997544  5566667778999999999999542      23677899999999999999999999753

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=96.50  E-value=0.018  Score=50.81  Aligned_cols=110  Identities=16%  Similarity=0.193  Sum_probs=77.3

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcc--ccc-cc-ccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcC-
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSD--WCF-AC-LQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGS-  202 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~--wC~-~C-~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~-  202 (554)
                      .+++||.+++.+..=  ..++.-+|-|.-.  .|. .+ ..+...+.++|+.+++.++.|+.+|.+....+.+.+|+.+ 
T Consensus         3 ~~~~l~~~~~~~~~C--~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~   80 (130)
T cd02983           3 EIIELTSEDVFEETC--EEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGF   80 (130)
T ss_pred             ceEEecCHHHHHhhc--cCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCcc
Confidence            467788776644221  2345666666421  122 12 3467889999999998669999999999999999999953 


Q ss_pred             CCCcceeccCCe-EEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        203 QLPQIALLTDGR-TSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       203 ~~Pti~~~~~g~-~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      .+|+++++...+ ......+..+.++|.+|+.+.+...
T Consensus        81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gk  118 (130)
T cd02983          81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGR  118 (130)
T ss_pred             CCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCC
Confidence            499999985433 2221445579999999999987655

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=96.48  E-value=0.015  Score=55.32  Aligned_cols=89  Identities=16%  Similarity=0.307  Sum_probs=61.8

Q ss_pred             CCcEEEEEEc-ccccccccchHHHHHHHHHhCCCCEEEEEEEecCc----------------------------HHHHHH
Q psy16770        147 TTPHLILFYS-DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE----------------------------QGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fya-~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~----------------------------~~l~~~  197 (554)
                      +++++|.||+ +||+.|....+.+.+++++++..|+.+..|+++..                            ..+++.
T Consensus        36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~  115 (199)
T PTZ00253         36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS  115 (199)
T ss_pred             CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence            4578888995 88999999889999999999877888888877642                            256778


Q ss_pred             hCCc----C-CCCcceec-cCCeEEEEe----CCcccHHHHHHHHHHh
Q psy16770        198 LGVG----S-QLPQIALL-TDGRTSFFK----EPSFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~----~-~~Pti~~~-~~g~~~~y~----~g~~~~~~i~~fl~~~  235 (554)
                      ||+.    + .+|+..++ .+|+.....    ...++.+++++.+...
T Consensus       116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~  163 (199)
T PTZ00253        116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF  163 (199)
T ss_pred             cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            8874    1 15666666 567653322    1224667777666543

>PRK13191 putative peroxiredoxin; Provisional

Probab=96.40  E-value=0.015  Score=55.96  Aligned_cols=87  Identities=17%  Similarity=0.248  Sum_probs=61.1

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------------cHHHHHHhCCc
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------------EQGLARRLGVG  201 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------------~~~l~~~~~v~  201 (554)
                      .+|+.|+++||+.|....+.+.+.+++++..|+.+..|.++.                           +..++++||+-
T Consensus        36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~  115 (215)
T PRK13191         36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMI  115 (215)
T ss_pred             EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCc
Confidence            344578999999999999999999999987678888777764                           23566677763


Q ss_pred             C------CCCcceec-cCCeEEEE--e--CCcccHHHHHHHHHHh
Q psy16770        202 S------QLPQIALL-TDGRTSFF--K--EPSFSVQKMVEFFRLK  235 (554)
Q Consensus       202 ~------~~Pti~~~-~~g~~~~y--~--~g~~~~~~i~~fl~~~  235 (554)
                      .      ..|+..++ .+|++...  +  ...++.+++...+...
T Consensus       116 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        116 HAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             ccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            1      15666666 57765332  1  1225888888888654

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=96.38  E-value=0.026  Score=48.31  Aligned_cols=71  Identities=15%  Similarity=0.136  Sum_probs=49.8

Q ss_pred             ccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeC
Q psy16770        247 TNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKE  321 (554)
Q Consensus       247 ~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~  321 (554)
                      +++++.+..  ..++++++.|...--++.+...     .+.++.+.+.|+.++.+  .+++++++|+|.+ .||+++||+
T Consensus         3 ~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD--~~~~la~~~~V~~-iPTf~~fk~   77 (114)
T cd02954           3 WAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID--EVPDFNKMYELYD-PPTVMFFFR   77 (114)
T ss_pred             HHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC--CCHHHHHHcCCCC-CCEEEEEEC
Confidence            345555542  2467788877555444433222     22255667899999988  7899999999997 999999997


Q ss_pred             C
Q psy16770        322 D  322 (554)
Q Consensus       322 ~  322 (554)
                      +
T Consensus        78 G   78 (114)
T cd02954          78 N   78 (114)
T ss_pred             C
Confidence            4

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=96.38  E-value=0.031  Score=59.72  Aligned_cols=105  Identities=16%  Similarity=0.144  Sum_probs=68.1

Q ss_pred             CCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHH-----HHHHhhccCC-ceEEEEEEccCCCChhHHhHhCCCC
Q psy16770        238 YKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLR-----YLINAFKHRT-TIVFGVIVYDQEDSSSVFQRFKVPG  311 (554)
Q Consensus       238 ~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~-----~~~~a~~~~~-~v~Fg~v~~~~~~~~~l~~k~~i~~  311 (554)
                      +..|..+|.+++++.+... ..++++++.|...--+..+     +-..+.++.+ .+.|+.++++.......+++|+|.+
T Consensus       350 ~~~Vv~L~~~nf~~~v~~~-~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~  428 (463)
T TIGR00424       350 SNNVVSLSRPGIENLLKLE-ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS  428 (463)
T ss_pred             CCCeEECCHHHHHHHHhhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc
Confidence            3346778889999988521 3566777766433222211     1112224444 3899999987422233457899997


Q ss_pred             CCceEEEEeCCCCCCCceeec-CCCChhHHHhHHhc
Q psy16770        312 DKDSLLIFKEDKDRPSASITM-NSIPVPTLQDITDN  346 (554)
Q Consensus       312 ~~Ptlvvfk~~~~~~~~~i~~-~~~~~~~l~~fi~~  346 (554)
                       +||+++|+++...+  ..|. +..+.+.|..||+.
T Consensus       429 -~PTii~Fk~g~~~~--~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       429 -FPTILFFPKHSSRP--IKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             -cceEEEEECCCCCc--eeCCCCCCCHHHHHHHHHh
Confidence             99999999876555  3465 57888899999874

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.0019  Score=60.11  Aligned_cols=53  Identities=36%  Similarity=0.574  Sum_probs=47.1

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------hhHHHHHHHHHHHHHHc
Q psy16770         19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND--------PTAQEKFLQLTEAYNIL   71 (554)
Q Consensus        19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~--------~~~~~~~~~i~~Ay~~L   71 (554)
                      .++|++||+.+.++..+|+++|+++....|||+...        ..+.+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999999999542        34778899999999854

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=96.37  E-value=0.03  Score=48.08  Aligned_cols=92  Identities=12%  Similarity=0.105  Sum_probs=56.3

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEE
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF  319 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvf  319 (554)
                      +.+++.+.+.    .+.++++.|.....++.+...     .+.++ ..++|..++.+  ...+++++|+|.. .||+++|
T Consensus        11 ~~~~~~~~i~----~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-~~i~f~~Vd~~--~~~~l~~~~~v~~-vPt~l~f   82 (113)
T cd02989          11 DEKEFFEIVK----SSERVVCHFYHPEFFRCKIMDKHLEILAKKH-LETKFIKVNAE--KAPFLVEKLNIKV-LPTVILF   82 (113)
T ss_pred             CHHHHHHHHh----CCCcEEEEEECCCCccHHHHHHHHHHHHHHc-CCCEEEEEEcc--cCHHHHHHCCCcc-CCEEEEE
Confidence            3367777774    345666666443333322221     11233 45899999887  6888999999997 9999999


Q ss_pred             eCCCCCC-----CceeecCCCChhHHHhHH
Q psy16770        320 KEDKDRP-----SASITMNSIPVPTLQDIT  344 (554)
Q Consensus       320 k~~~~~~-----~~~i~~~~~~~~~l~~fi  344 (554)
                      +++..--     ...-..++++...++.|+
T Consensus        83 k~G~~v~~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          83 KNGKTVDRIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             ECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence            9753210     111112566677777665

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=96.35  E-value=0.015  Score=49.95  Aligned_cols=79  Identities=18%  Similarity=0.227  Sum_probs=53.5

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCc-------hhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLP-------VRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGD  312 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~-------~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~  312 (554)
                      +..++.+++++.+.+   .++++++.|....-       +.+...+..+ ...+.+.|+.++|+...+.+++++|+|.. 
T Consensus         3 v~~l~~~~f~~~i~~---~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~-   78 (114)
T cd02992           3 VIVLDAASFNSALLG---SPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG-   78 (114)
T ss_pred             eEECCHHhHHHHHhc---CCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC-
Confidence            456678888888764   34677777744332       2222222222 22346899999987555778999999997 


Q ss_pred             CceEEEEeCCC
Q psy16770        313 KDSLLIFKEDK  323 (554)
Q Consensus       313 ~Ptlvvfk~~~  323 (554)
                      .|++++|+++.
T Consensus        79 ~Pt~~lf~~~~   89 (114)
T cd02992          79 YPTLRYFPPFS   89 (114)
T ss_pred             CCEEEEECCCC
Confidence            99999998754

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=96.33  E-value=0.01  Score=50.08  Aligned_cols=88  Identities=19%  Similarity=0.157  Sum_probs=61.8

Q ss_pred             ccccccccccccCCCCCCcEEEEEEcccccccc---cchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        131 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACL---QVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       131 ~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~---~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .++..++++.+.   .... .|.|.+..|..|.   ..+=+.-++.+.+.+. +..+.|+-..+..|..+||+.. +|++
T Consensus        13 ~vd~~~ld~~l~---~~~~-~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~-~~~avv~~~~e~~L~~r~gv~~-~PaL   86 (107)
T PF07449_consen   13 RVDADTLDAFLA---APGD-AVLFFAGDPARFPETADVAVILPELVKAFPGR-FRGAVVARAAERALAARFGVRR-WPAL   86 (107)
T ss_dssp             EE-CCCHHHHHH---CCSC-EEEEESS-TTTSTTCCHHHHHHHHHHCTSTTS-EEEEEEEHHHHHHHHHHHT-TS-SSEE
T ss_pred             eechhhHHHHHh---CCCc-EEEEECCCCCcCcccccceeEcHHHHHhhhCc-cceEEECchhHHHHHHHhCCcc-CCeE
Confidence            456777777773   3334 4556665554444   3344666677777764 8888888888999999999996 9999


Q ss_pred             eeccCCeEEEEeCCccc
Q psy16770        208 ALLTDGRTSFFKEPSFS  224 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~  224 (554)
                      +++++|+..-.-.|.++
T Consensus        87 vf~R~g~~lG~i~gi~d  103 (107)
T PF07449_consen   87 VFFRDGRYLGAIEGIRD  103 (107)
T ss_dssp             EEEETTEEEEEEESSST
T ss_pred             EEEECCEEEEEecCeec
Confidence            99999998777766655

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=96.32  E-value=0.019  Score=49.01  Aligned_cols=82  Identities=4%  Similarity=-0.065  Sum_probs=53.6

Q ss_pred             CCceEEEEEecCCchhHHHH-----HHhhccCC-ceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeec
Q psy16770        259 DNKVHALLFQRSLPVRLRYL-----INAFKHRT-TIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITM  332 (554)
Q Consensus       259 ~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~-~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~  332 (554)
                      .++++++.|....-+..+..     ..+..+.+ .+.|+.++++  .+..++++++|.+ .||+++|+++..   .....
T Consensus        23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d--~~~~l~~~~~V~~-~Pt~~i~~~g~~---~~~~~   96 (111)
T cd02963          23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG--HERRLARKLGAHS-VPAIVGIINGQV---TFYHD   96 (111)
T ss_pred             CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc--ccHHHHHHcCCcc-CCEEEEEECCEE---EEEec
Confidence            45677776644322221111     11123333 5889999887  5788999999997 999999986522   12346


Q ss_pred             CCCChhHHHhHHhc
Q psy16770        333 NSIPVPTLQDITDN  346 (554)
Q Consensus       333 ~~~~~~~l~~fi~~  346 (554)
                      |..+...|.+||+.
T Consensus        97 G~~~~~~l~~~i~~  110 (111)
T cd02963          97 SSFTKQHVVDFVRK  110 (111)
T ss_pred             CCCCHHHHHHHHhc
Confidence            77788888888864

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=96.24  E-value=0.015  Score=49.71  Aligned_cols=97  Identities=16%  Similarity=0.155  Sum_probs=66.9

Q ss_pred             cccccccccccCCCCCCcEEEEEE----cccccccccchHHHHHHHHHhC-CCCEEEEEEEecCcHHHHHHhCCcC-C--
Q psy16770        132 TTHWNFEKNYIPKSYTTPHLILFY----SDWCFACLQVEPIFKKLMDELS-PLGVGFFTVHVHNEQGLARRLGVGS-Q--  203 (554)
Q Consensus       132 Lt~~~F~~~v~~~~~~~~~lV~Fy----a~wC~~C~~l~p~~~~~a~~l~-~~~v~~~~Vd~~~~~~l~~~~~v~~-~--  203 (554)
                      +|.+|.....     ..+.++.||    +..-..-..+...+.++|+.++ + ++.|+.+|.+......+.+|++. .  
T Consensus         4 ~~~en~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g-ki~Fv~~D~~~~~~~l~~fgl~~~~~~   77 (111)
T cd03073           4 RTKDNRAQFT-----KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR-KLNFAVADKEDFSHELEEFGLDFSGGE   77 (111)
T ss_pred             eccchHHHhc-----cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC-eEEEEEEcHHHHHHHHHHcCCCcccCC
Confidence            4555555442     234455554    2222233557889999999999 6 49999999999888999999985 4  


Q ss_pred             CCcceeccCCeEEEE-eCCcc-cHHHHHHHHHHh
Q psy16770        204 LPQIALLTDGRTSFF-KEPSF-SVQKMVEFFRLK  235 (554)
Q Consensus       204 ~Pti~~~~~g~~~~y-~~g~~-~~~~i~~fl~~~  235 (554)
                      +|++.++.... ..| ..+.. +.++|.+|+.+.
T Consensus        78 ~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          78 KPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             CCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence            89999885332 333 33445 779999998764

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=96.14  E-value=0.056  Score=46.27  Aligned_cols=102  Identities=16%  Similarity=0.254  Sum_probs=67.2

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCC-----chhHHHHH-HhhccCCceEEEEEEcc---CCCChhHHhHhCCCCC-
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSL-----PVRLRYLI-NAFKHRTTIVFGVIVYD---QEDSSSVFQRFKVPGD-  312 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~-----~~~~~~~~-~a~~~~~~v~Fg~v~~~---~~~~~~l~~k~~i~~~-  312 (554)
                      .+++-++++.+.    ..+.+++=|.-.-     ......++ .+.+-.+++-+|.|-..   ...+.+++++|+++.. 
T Consensus         8 ~LD~~tFdKvi~----kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~   83 (126)
T PF07912_consen    8 PLDELTFDKVIP----KFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED   83 (126)
T ss_dssp             EESTTHHHHHGG----GSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred             eccceehhheec----cCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence            455667888884    4677777774321     22344444 33445677777776543   3668899999999754 


Q ss_pred             CceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCC
Q psy16770        313 KDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNP  348 (554)
Q Consensus       313 ~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~  348 (554)
                      +|.+.+|..+.+.|...-..++++.+.|..|++.|.
T Consensus        84 fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t  119 (126)
T PF07912_consen   84 FPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNT  119 (126)
T ss_dssp             -SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTS
T ss_pred             CCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCC
Confidence            899999998777775544488899999999999884

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=96.09  E-value=0.015  Score=45.30  Aligned_cols=66  Identities=18%  Similarity=0.403  Sum_probs=45.2

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH---HHHHhCCcCCCCcceeccCCeEEEEeCCcccHHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG---LARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQK  227 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~---l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~  227 (554)
                      ++.|..+||+.|.+....+++       .++.+..+|.+.+..   +....|... +|.+  |.+|+.   .||   .++
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~~~~~~~~~~~~~g~~~-vP~i--fi~g~~---igg---~~~   66 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLGKDITGRSLRAVTGAMT-VPQV--FIDGEL---IGG---SDD   66 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECCCChhHHHHHHHhCCCC-cCeE--EECCEE---EeC---HHH
Confidence            567999999999987655552       357788888876542   333347776 9997  456754   355   377


Q ss_pred             HHHHH
Q psy16770        228 MVEFF  232 (554)
Q Consensus       228 i~~fl  232 (554)
                      |.+|+
T Consensus        67 l~~~l   71 (72)
T cd03029          67 LEKYF   71 (72)
T ss_pred             HHHHh
Confidence            77775

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=96.08  E-value=0.057  Score=44.44  Aligned_cols=72  Identities=11%  Similarity=0.233  Sum_probs=47.9

Q ss_pred             cccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHh-----hccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEe
Q psy16770        246 ATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINA-----FKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFK  320 (554)
Q Consensus       246 ~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a-----~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk  320 (554)
                      .+++++.+...  .++++++.|........+.....     ..+...+.|..++++  ...+++++|++.+ .||+++|+
T Consensus         2 ~~~~~~~~~~~--~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~--~~~~~~~~~~i~~-~Pt~~~~~   76 (97)
T cd02984           2 EEEFEELLKSD--ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE--ELPEISEKFEITA-VPTFVFFR   76 (97)
T ss_pred             HHHHHHHHhhC--CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc--cCHHHHHhcCCcc-ccEEEEEE
Confidence            45677767541  25777777755444333322221     133568889888876  6788999999997 99999998


Q ss_pred             CC
Q psy16770        321 ED  322 (554)
Q Consensus       321 ~~  322 (554)
                      ++
T Consensus        77 ~g   78 (97)
T cd02984          77 NG   78 (97)
T ss_pred             CC
Confidence            64

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=96.05  E-value=0.066  Score=44.87  Aligned_cols=91  Identities=10%  Similarity=0.128  Sum_probs=56.7

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH-----hhccC-CceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN-----AFKHR-TTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~-----a~~~~-~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      +.|.+++++.+.    .++++++.|...--++.+....     +..+. ..+.|+.++.+   +.+++++|+|.. .||+
T Consensus         4 i~~~~~~~~~i~----~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d---~~~~~~~~~v~~-~Pt~   75 (102)
T cd02948           4 INNQEEWEELLS----NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD---TIDTLKRYRGKC-EPTF   75 (102)
T ss_pred             ccCHHHHHHHHc----cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC---CHHHHHHcCCCc-CcEE
Confidence            346677888773    4677777775444333222221     11333 34789999875   568899999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~  345 (554)
                      ++|+++...  .. ..| .+...+.++|.
T Consensus        76 ~~~~~g~~~--~~-~~G-~~~~~~~~~i~  100 (102)
T cd02948          76 LFYKNGELV--AV-IRG-ANAPLLNKTIT  100 (102)
T ss_pred             EEEECCEEE--EE-Eec-CChHHHHHHHh
Confidence            999864321  11 222 35566777765

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>KOG3414|consensus

Probab=96.05  E-value=0.023  Score=48.44  Aligned_cols=76  Identities=11%  Similarity=0.343  Sum_probs=65.0

Q ss_pred             cccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEE
Q psy16770        138 EKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTS  216 (554)
Q Consensus       138 ~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~  216 (554)
                      +..|. .+..+.++|-|-.+|.+.|.++-..+.++++.+... ..+.-||.++-+.+.+-|++.. .||+++|-+++.+
T Consensus        15 dqaI~-~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~IylvdideV~~~~~~~~l~~-p~tvmfFfn~kHm   90 (142)
T KOG3414|consen   15 DQAIL-STEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDIDEVPDFVKMYELYD-PPTVMFFFNNKHM   90 (142)
T ss_pred             HHHHh-cccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecchhhhhhhhhcccC-CceEEEEEcCceE
Confidence            44444 346789999999999999999999999999999875 7888999999999999999997 9999998666543

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=96.04  E-value=0.052  Score=45.59  Aligned_cols=54  Identities=15%  Similarity=0.183  Sum_probs=43.0

Q ss_pred             CceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        286 TTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       286 ~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      ..+.++.++++  ...+++++|+|.+ .|++++|+++.  .  ..+.|..+.+.|.+|++.
T Consensus        49 ~~~~~~~vd~~--~~~~~~~~~~I~~-~Pt~~l~~~~~--~--~~~~G~~~~~~l~~~~~~  102 (104)
T cd03000          49 SPVRVGKLDAT--AYSSIASEFGVRG-YPTIKLLKGDL--A--YNYRGPRTKDDIVEFANR  102 (104)
T ss_pred             CcEEEEEEECc--cCHhHHhhcCCcc-ccEEEEEcCCC--c--eeecCCCCHHHHHHHHHh
Confidence            35888989886  5789999999997 99999997532  2  346778888899998874

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PLN02309 5'-adenylylsulfate reductase

Probab=95.97  E-value=0.031  Score=59.66  Aligned_cols=101  Identities=15%  Similarity=0.190  Sum_probs=66.7

Q ss_pred             CccccCCcccHHHHHhhhhcCCceEEEEEecCCc-------hhHHHHHHhhccC-CceEEEEEEccCCCChhHHh-HhCC
Q psy16770        239 KLIVPLSATNVDAFLDNWREDNKVHALLFQRSLP-------VRLRYLINAFKHR-TTIVFGVIVYDQEDSSSVFQ-RFKV  309 (554)
Q Consensus       239 ~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~-------~~~~~~~~a~~~~-~~v~Fg~v~~~~~~~~~l~~-k~~i  309 (554)
                      ..+..++.+++++.+..- ..+++.++.|...--       +.+..+  +..+. ..+.|+.++++. .+.++++ +|+|
T Consensus       345 ~~Vv~Lt~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~L--A~~~~~~~V~f~kVD~d~-~~~~la~~~~~I  420 (457)
T PLN02309        345 QNVVALSRAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEEL--AEKLAGSGVKVAKFRADG-DQKEFAKQELQL  420 (457)
T ss_pred             CCcEECCHHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHH--HHHhccCCeEEEEEECCC-cchHHHHhhCCC
Confidence            346677888898887522 356677776643322       222222  22333 359999999862 2456775 6999


Q ss_pred             CCCCceEEEEeCCCCCCCceeec-CCCChhHHHhHHhc
Q psy16770        310 PGDKDSLLIFKEDKDRPSASITM-NSIPVPTLQDITDN  346 (554)
Q Consensus       310 ~~~~Ptlvvfk~~~~~~~~~i~~-~~~~~~~l~~fi~~  346 (554)
                      .+ +||+++|+++...+  ..|. +..+...|..||+.
T Consensus       421 ~~-~PTil~f~~g~~~~--v~Y~~~~R~~~~L~~fv~~  455 (457)
T PLN02309        421 GS-FPTILLFPKNSSRP--IKYPSEKRDVDSLLSFVNS  455 (457)
T ss_pred             ce-eeEEEEEeCCCCCe--eecCCCCcCHHHHHHHHHH
Confidence            97 99999999876554  4465 46788899999974

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.95  E-value=0.014  Score=44.77  Aligned_cols=55  Identities=22%  Similarity=0.500  Sum_probs=38.7

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHH----HHHhCCcCCCCcceeccCCeE
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGL----ARRLGVGSQLPQIALLTDGRT  215 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l----~~~~~v~~~~Pti~~~~~g~~  215 (554)
                      ++.|+++||++|+++.+.+++.       ++.+..+|...+...    .+..+... +|++  |.+|+.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~~~~~~~~-~P~~--~~~~~~   60 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELKELSGWPT-VPQI--FINGEF   60 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHHHHhCCCC-cCEE--EECCEE
Confidence            4678999999999888777643       467778888876644    33446665 8876  446643

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=95.88  E-value=0.54  Score=45.46  Aligned_cols=90  Identities=12%  Similarity=0.092  Sum_probs=60.3

Q ss_pred             ceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCCeeEE
Q psy16770        369 KLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYG  447 (554)
Q Consensus       369 ~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ky~  447 (554)
                      +.++|.|. +....+....+.+.++|++  +++ .+.|+.+|+++++++++.+       +. .++|.+...+ ++..+.
T Consensus        53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~--~~~-~v~~~~VD~~~~~~l~~~~-------~I-~~~PTl~~f~-~G~~v~  120 (224)
T PTZ00443         53 GPWFVKFYAPWCSHCRKMAPAWERLAKA--LKG-QVNVADLDATRALNLAKRF-------AI-KGYPTLLLFD-KGKMYQ  120 (224)
T ss_pred             CCEEEEEECCCChHHHHHHHHHHHHHHH--cCC-CeEEEEecCcccHHHHHHc-------CC-CcCCEEEEEE-CCEEEE
Confidence            34555554 5566677788899999998  864 5999999999999999887       11 3555443333 233332


Q ss_pred             EecCCCCCcccccchhhHHHHHHHHhhhcCCC
Q psy16770        448 WLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPY  479 (554)
Q Consensus       448 ~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~  479 (554)
                      ...|         ..+.+.|.+|+.+..+...
T Consensus       121 ~~~G---------~~s~e~L~~fi~~~~~~~~  143 (224)
T PTZ00443        121 YEGG---------DRSTEKLAAFALGDFKKAL  143 (224)
T ss_pred             eeCC---------CCCHHHHHHHHHHHHHhhc
Confidence            2233         3578899999888775443

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=95.76  E-value=0.044  Score=46.87  Aligned_cols=77  Identities=14%  Similarity=0.086  Sum_probs=49.4

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++.+.+... +.++++++.|.....++.+...     .+.++ ..+.|..++++  .+ +++++|+|.. .||
T Consensus         6 v~~i~~~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~-~~v~f~~vd~~--~~-~l~~~~~i~~-~Pt   79 (113)
T cd02957           6 VREISSKEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKY-PETKFVKINAE--KA-FLVNYLDIKV-LPT   79 (113)
T ss_pred             EEEEcHHHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHC-CCcEEEEEEch--hh-HHHHhcCCCc-CCE
Confidence            3455667787777531 1136777766544433322221     12233 46889999876  34 9999999997 999


Q ss_pred             EEEEeCCC
Q psy16770        316 LLIFKEDK  323 (554)
Q Consensus       316 lvvfk~~~  323 (554)
                      +++|+++.
T Consensus        80 ~~~f~~G~   87 (113)
T cd02957          80 LLVYKNGE   87 (113)
T ss_pred             EEEEECCE
Confidence            99999853

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=95.76  E-value=0.014  Score=45.57  Aligned_cols=66  Identities=15%  Similarity=0.344  Sum_probs=46.1

Q ss_pred             EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHh---CCcCCCCcceeccCCeEEEEeCCcccHHHH
Q psy16770        152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL---GVGSQLPQIALLTDGRTSFFKEPSFSVQKM  228 (554)
Q Consensus       152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~---~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i  228 (554)
                      ..|..++|++|++....+++       .|+.+..+|.++++.....+   |..+ +|++.+  +|.  ...+|. +.+.|
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~~~~~~~~~~~~g~~~-vP~v~~--~g~--~~~~G~-~~~~~   68 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINIDEQPEAIDYVKAQGFRQ-VPVIVA--DGD--LSWSGF-RPDKL   68 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHcCCcc-cCEEEE--CCC--cEEecc-CHHHH
Confidence            46788999999987766653       36888899999887666655   7776 999755  443  234554 45666


Q ss_pred             HH
Q psy16770        229 VE  230 (554)
Q Consensus       229 ~~  230 (554)
                      .+
T Consensus        69 ~~   70 (72)
T TIGR02194        69 KA   70 (72)
T ss_pred             Hh
Confidence            54

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=95.76  E-value=0.092  Score=41.94  Aligned_cols=79  Identities=14%  Similarity=0.204  Sum_probs=51.8

Q ss_pred             CceEEEEEecCCchhHHHHHHh---h-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCC
Q psy16770        260 NKVHALLFQRSLPVRLRYLINA---F-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSI  335 (554)
Q Consensus       260 ~~~~v~~f~~~~~~~~~~~~~a---~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~  335 (554)
                      .++.+++|....-+........   + +..+.+.|+.++++  .+..++++|++.+ .|++++|+++..  . ....+..
T Consensus        10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~v~~-~P~~~~~~~g~~--~-~~~~g~~   83 (93)
T cd02947          10 AKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVD--ENPELAEEYGVRS-IPTFLFFKNGKE--V-DRVVGAD   83 (93)
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECC--CChhHHHhcCccc-ccEEEEEECCEE--E-EEEecCC
Confidence            3677777755433322222211   1 22578999999887  5788999999997 999999987532  1 2344555


Q ss_pred             ChhHHHhHH
Q psy16770        336 PVPTLQDIT  344 (554)
Q Consensus       336 ~~~~l~~fi  344 (554)
                      +.+.|.+||
T Consensus        84 ~~~~l~~~i   92 (93)
T cd02947          84 PKEELEEFL   92 (93)
T ss_pred             CHHHHHHHh
Confidence            667777776

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=95.75  E-value=0.098  Score=43.27  Aligned_cols=81  Identities=11%  Similarity=0.134  Sum_probs=53.6

Q ss_pred             CCceEEEEEecCCchhHHHHHH-----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecC
Q psy16770        259 DNKVHALLFQRSLPVRLRYLIN-----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMN  333 (554)
Q Consensus       259 ~~~~~v~~f~~~~~~~~~~~~~-----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~  333 (554)
                      .+++++++|....-+..+....     +.++.+.+.|..++.+  .+++++++++|.+ .|++++|+++ + .. ....+
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d--~~~~l~~~~~v~~-vPt~~i~~~g-~-~v-~~~~g   85 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID--EDQEIAEAAGIMG-TPTVQFFKDK-E-LV-KEISG   85 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC--CCHHHHHHCCCee-ccEEEEEECC-e-EE-EEEeC
Confidence            5777777776544333222221     1144567889999886  6889999999997 9999999863 2 21 23455


Q ss_pred             CCChhHHHhHHh
Q psy16770        334 SIPVPTLQDITD  345 (554)
Q Consensus       334 ~~~~~~l~~fi~  345 (554)
                      ..+.+.+.+|++
T Consensus        86 ~~~~~~~~~~l~   97 (97)
T cd02949          86 VKMKSEYREFIE   97 (97)
T ss_pred             CccHHHHHHhhC
Confidence            666777777763

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=95.73  E-value=0.063  Score=48.65  Aligned_cols=78  Identities=14%  Similarity=0.248  Sum_probs=52.4

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccC-CceEEEEEEccCCCChhHHhHhCCCCC--
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHR-TTIVFGVIVYDQEDSSSVFQRFKVPGD--  312 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~-~~v~Fg~v~~~~~~~~~l~~k~~i~~~--  312 (554)
                      +..++.+++++.+..  ...+++++.|....-++.+...     .+.++. ..+.|+.++++  .+++++++|+|...  
T Consensus        30 v~~l~~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd--~~~~la~~~~V~~~~~  105 (152)
T cd02962          30 IKYFTPKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG--RFPNVAEKFRVSTSPL  105 (152)
T ss_pred             cEEcCHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC--CCHHHHHHcCceecCC
Confidence            556677888887754  2355667766544433322222     122333 35999999988  68899999999742  


Q ss_pred             ---CceEEEEeCC
Q psy16770        313 ---KDSLLIFKED  322 (554)
Q Consensus       313 ---~Ptlvvfk~~  322 (554)
                         .||+++|+++
T Consensus       106 v~~~PT~ilf~~G  118 (152)
T cd02962         106 SKQLPTIILFQGG  118 (152)
T ss_pred             cCCCCEEEEEECC
Confidence               7999999874

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.65  E-value=0.043  Score=60.23  Aligned_cols=84  Identities=15%  Similarity=0.231  Sum_probs=66.0

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ  226 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~  226 (554)
                      +...+-.|+++.|++|......+.+++..-.  .+..-.+|+...++++.+|++.+ +|++++  +|+. .+. |..+.+
T Consensus       117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~~~~~~~~~v~~-VP~~~i--~~~~-~~~-g~~~~~  189 (515)
T TIGR03140       117 GPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALFQDEVEALGIQG-VPAVFL--NGEE-FHN-GRMDLA  189 (515)
T ss_pred             CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhCHHHHHhcCCcc-cCEEEE--CCcE-EEe-cCCCHH
Confidence            3455778999999999988888888877643  48888899999999999999997 999876  5653 344 445778


Q ss_pred             HHHHHHHHhCC
Q psy16770        227 KMVEFFRLKLP  237 (554)
Q Consensus       227 ~i~~fl~~~~~  237 (554)
                      .+++.+.+..+
T Consensus       190 ~~~~~l~~~~~  200 (515)
T TIGR03140       190 ELLEKLEETAG  200 (515)
T ss_pred             HHHHHHhhccC
Confidence            88777776533

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=95.55  E-value=0.094  Score=47.56  Aligned_cols=44  Identities=18%  Similarity=0.275  Sum_probs=35.0

Q ss_pred             CCCCCcEEEEEEcccccccccchHHHHHHHHHh--CCCCEEEEEEEe
Q psy16770        144 KSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL--SPLGVGFFTVHV  188 (554)
Q Consensus       144 ~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l--~~~~v~~~~Vd~  188 (554)
                      ....++.|++|+...|++|.++.+.+.++.+.+  .+ .+.+..++.
T Consensus         9 ~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~   54 (162)
T PF13462_consen    9 NPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV   54 (162)
T ss_dssp             -TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred             CCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence            345678899999999999999999999888887  44 588877765

...

>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX)

Probab=95.55  E-value=0.11  Score=43.03  Aligned_cols=93  Identities=15%  Similarity=0.213  Sum_probs=55.5

Q ss_pred             ceEEEEEcCCCCc--chhHHHHHHHHHhhcc--C----CCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEec
Q psy16770        369 KLCVVLFSEDSPE--HDASRHTLRRFAQESR--F----VHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMD  440 (554)
Q Consensus       369 ~lcvvl~~~~~~~--~~~~~~~l~~~a~~~~--~----~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~  440 (554)
                      ..|+|+|+.++++  .+...+.+..+|.+..  +    .+.++.|.+.--+.-.++++.|.+   +.+..|.++++... 
T Consensus        15 ~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~n---L~d~~P~LviLDip-   90 (116)
T cd03071          15 GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTN---LPEAAPLLTILDMS-   90 (116)
T ss_pred             CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcC---CCccCceEEEEecc-
Confidence            5688999855433  5677788888887631  1    122344444333345666666632   22323555555433 


Q ss_pred             CCCeeEEEecCCCCCcccccchhhHHHHHHHHhhh
Q psy16770        441 YKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLV  475 (554)
Q Consensus       441 ~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~  475 (554)
                       ++.+|. ++.        .+.|.+++.+|+.+++
T Consensus        91 -~r~~~v-~~~--------eeIT~e~~~~fv~~yl  115 (116)
T cd03071          91 -ARAKYV-MDV--------EEITPAIVEAFVSDFL  115 (116)
T ss_pred             -ccceEe-Cch--------HhcCHHHHHHHHHHhh
Confidence             556774 333        2689999999999986

NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.

>PHA02278 thioredoxin-like protein

Probab=95.54  E-value=0.1  Score=43.92  Aligned_cols=89  Identities=11%  Similarity=0.122  Sum_probs=53.7

Q ss_pred             ccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH-----hhccCCceEEEEEEccCCC--ChhHHhHhCCCCCCceEEEE
Q psy16770        247 TNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN-----AFKHRTTIVFGVIVYDQED--SSSVFQRFKVPGDKDSLLIF  319 (554)
Q Consensus       247 ~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~-----a~~~~~~v~Fg~v~~~~~~--~~~l~~k~~i~~~~Ptlvvf  319 (554)
                      +++.+.+    ..++++++.|...--.+.+...-     +..+...+.|..++.+...  .++++++|+|.+ .||+++|
T Consensus         5 ~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~-iPT~i~f   79 (103)
T PHA02278          5 VDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMS-TPVLIGY   79 (103)
T ss_pred             HHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCcc-ccEEEEE
Confidence            4555555    24667777665443333332221     1123345779999887321  268999999997 9999999


Q ss_pred             eCCCCCCCceeecCCCChhHHHhH
Q psy16770        320 KEDKDRPSASITMNSIPVPTLQDI  343 (554)
Q Consensus       320 k~~~~~~~~~i~~~~~~~~~l~~f  343 (554)
                      +++.. .  ....|..+.+.|.+|
T Consensus        80 k~G~~-v--~~~~G~~~~~~l~~~  100 (103)
T PHA02278         80 KDGQL-V--KKYEDQVTPMQLQEL  100 (103)
T ss_pred             ECCEE-E--EEEeCCCCHHHHHhh
Confidence            98533 1  233455666666654

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=95.53  E-value=0.17  Score=42.50  Aligned_cols=74  Identities=18%  Similarity=0.219  Sum_probs=46.9

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCC-ChhHHhHhCCCCCCceEEE
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQED-SSSVFQRFKVPGDKDSLLI  318 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~-~~~l~~k~~i~~~~Ptlvv  318 (554)
                      |.+++++.+..  ..++++++.|...--++.+...     .+..+ +.+.|+.++.+... ..+++++|+|.+ .||+++
T Consensus         2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~-~Pt~~~   77 (103)
T cd02985           2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIE-VPHFLF   77 (103)
T ss_pred             CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCc-CCEEEE
Confidence            34567777653  2367777777544333222111     12244 67899999876321 137999999997 999999


Q ss_pred             EeCC
Q psy16770        319 FKED  322 (554)
Q Consensus       319 fk~~  322 (554)
                      |+++
T Consensus        78 ~~~G   81 (103)
T cd02985          78 YKDG   81 (103)
T ss_pred             EeCC
Confidence            9864

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=95.51  E-value=0.016  Score=46.08  Aligned_cols=58  Identities=21%  Similarity=0.446  Sum_probs=40.8

Q ss_pred             EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHH----HhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770        152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLAR----RLGVGSQLPQIALLTDGRTSFFKEPS  222 (554)
Q Consensus       152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~----~~~v~~~~Pti~~~~~g~~~~y~~g~  222 (554)
                      +.|..+||++|.+....+++       .++.+..+|.+.++...+    ..|..+ +|++  |.+|+   +-||.
T Consensus         2 ~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~~~~~~~~~~~~~g~~~-vP~i--~i~g~---~igg~   63 (79)
T TIGR02181         2 TIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVDGDPALRDEMMQRSGRRT-VPQI--FIGDV---HVGGC   63 (79)
T ss_pred             EEEecCCChhHHHHHHHHHH-------cCCCcEEEEecCCHHHHHHHHHHhCCCC-cCEE--EECCE---EEcCh
Confidence            56889999999988877763       357778888887765443    347776 9997  44665   34564

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=95.44  E-value=0.02  Score=45.98  Aligned_cols=71  Identities=13%  Similarity=0.220  Sum_probs=49.0

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHH---HhCCcCCCCcceeccCCeEEEEeCCcccHHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLAR---RLGVGSQLPQIALLTDGRTSFFKEPSFSVQK  227 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~---~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~  227 (554)
                      ++.|..+||++|.+..-.+++       .|+.+-.+|.+.+++...   ..|... +|++++  ++..   ..|. +.+.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~~~~~~~~~~~~~g~~~-vPvv~i--~~~~---~~Gf-~~~~   68 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES-------RGFDFEMINVDRVPEAAETLRAQGFRQ-LPVVIA--GDLS---WSGF-RPDM   68 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHcCCCC-cCEEEE--CCEE---EecC-CHHH
Confidence            567889999999987766643       368999999998776443   446665 999865  4432   2354 5688


Q ss_pred             HHHHHHHh
Q psy16770        228 MVEFFRLK  235 (554)
Q Consensus       228 i~~fl~~~  235 (554)
                      |.+.+...
T Consensus        69 l~~~~~~~   76 (81)
T PRK10329         69 INRLHPAP   76 (81)
T ss_pred             HHHHHHhh
Confidence            87766543

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=95.43  E-value=0.13  Score=43.06  Aligned_cols=77  Identities=18%  Similarity=0.174  Sum_probs=51.1

Q ss_pred             CCceEEEEEecCCc-------hhHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceee
Q psy16770        259 DNKVHALLFQRSLP-------VRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASIT  331 (554)
Q Consensus       259 ~~~~~v~~f~~~~~-------~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~  331 (554)
                      .++++++.|...--       +.+...+.  .+ ..+.|+.++.+. ...+++++|+|.+ .||+++|+++  ..  ..+
T Consensus        17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~--~~-~~~~~~~vd~~~-~~~~l~~~~~V~~-~PT~~lf~~g--~~--~~~   87 (100)
T cd02999          17 REDYTAVLFYASWCPFSASFRPHFNALSS--MF-PQIRHLAIEESS-IKPSLLSRYGVVG-FPTILLFNST--PR--VRY   87 (100)
T ss_pred             CCCEEEEEEECCCCHHHHhHhHHHHHHHH--Hh-ccCceEEEECCC-CCHHHHHhcCCee-cCEEEEEcCC--ce--eEe
Confidence            46777777744322       22222222  33 347777777541 3678999999997 9999999875  22  457


Q ss_pred             cCCCChhHHHhHH
Q psy16770        332 MNSIPVPTLQDIT  344 (554)
Q Consensus       332 ~~~~~~~~l~~fi  344 (554)
                      .|..+...|.+||
T Consensus        88 ~G~~~~~~l~~f~  100 (100)
T cd02999          88 NGTRTLDSLAAFY  100 (100)
T ss_pred             cCCCCHHHHHhhC
Confidence            7888888888875

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PTZ00051 thioredoxin; Provisional

Probab=95.42  E-value=0.078  Score=43.72  Aligned_cols=73  Identities=18%  Similarity=0.186  Sum_probs=49.4

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHh----hccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEE
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINA----FKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLI  318 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a----~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvv  318 (554)
                      ..+.+++.+.++    .++++++.|....-+..+.....    .+....+.|+.++++  ....++++|++.+ .|++++
T Consensus         5 i~~~~~~~~~~~----~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~--~~~~~~~~~~v~~-~Pt~~~   77 (98)
T PTZ00051          5 VTSQAEFESTLS----QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD--ELSEVAEKENITS-MPTFKV   77 (98)
T ss_pred             ecCHHHHHHHHh----cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc--chHHHHHHCCCce-eeEEEE
Confidence            335567777773    46777777765544443333221    122346889999886  6788999999997 999999


Q ss_pred             EeCC
Q psy16770        319 FKED  322 (554)
Q Consensus       319 fk~~  322 (554)
                      |+++
T Consensus        78 ~~~g   81 (98)
T PTZ00051         78 FKNG   81 (98)
T ss_pred             EeCC
Confidence            9864

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=95.40  E-value=0.16  Score=45.50  Aligned_cols=93  Identities=14%  Similarity=0.162  Sum_probs=56.6

Q ss_pred             ccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeC
Q psy16770        247 TNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKE  321 (554)
Q Consensus       247 ~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~  321 (554)
                      .++++.+    ..++++++.|...--+..+...     .+..+.+.+.|..++.+......++++|+|.+ .|++++|++
T Consensus        11 ~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~-iPt~v~~~~   85 (142)
T cd02950          11 TPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDG-IPHFVFLDR   85 (142)
T ss_pred             CCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCC-CCEEEEECC
Confidence            3455544    3577788877544333222221     12245567888888876433457899999997 999999965


Q ss_pred             CCCCCCceeecCCCChhHHHhHHhc
Q psy16770        322 DKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       322 ~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +....  ....|..+.+.|.++|+.
T Consensus        86 ~G~~v--~~~~G~~~~~~l~~~l~~  108 (142)
T cd02950          86 EGNEE--GQSIGLQPKQVLAQNLDA  108 (142)
T ss_pred             CCCEE--EEEeCCCCHHHHHHHHHH
Confidence            33321  234566666766666654

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.37  E-value=0.03  Score=43.83  Aligned_cols=59  Identities=20%  Similarity=0.385  Sum_probs=40.8

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHH----HhCCc-CCCCcceeccCCeEEEEeCCc
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLAR----RLGVG-SQLPQIALLTDGRTSFFKEPS  222 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~----~~~v~-~~~Pti~~~~~g~~~~y~~g~  222 (554)
                      ++.|..+||++|.+....+++       .++.+..+|.+.+++..+    ..|.. + +|++.  .+|+.   .||.
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~~~~~~~~~~~~~~~~~~-vP~v~--i~g~~---igg~   65 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVDGDPALREEMINRSGGRRT-VPQIF--IGDVH---IGGC   65 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECCCCHHHHHHHHHHhCCCCc-cCEEE--ECCEE---EeCh
Confidence            467889999999987766653       357888888888655433    34665 6 89764  46643   3564

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=95.35  E-value=0.022  Score=47.78  Aligned_cols=93  Identities=19%  Similarity=0.302  Sum_probs=61.1

Q ss_pred             cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH----HHHHHhCCcCCCCccee
Q psy16770        134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ----GLARRLGVGSQLPQIAL  209 (554)
Q Consensus       134 ~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~----~l~~~~~v~~~~Pti~~  209 (554)
                      .+++++.+ ..+.++|++|+=.+..|+-+......|++......+. +.++.+|.-+++    .+++++||...-|.+++
T Consensus         7 ~eql~~i~-~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il   84 (105)
T PF11009_consen    7 EEQLEEIL-EESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL   84 (105)
T ss_dssp             HHHHHHHH-HH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred             HHHHHHHH-HhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence            34555544 3456889999889999999999999999998887753 899999998865    56889999877899999


Q ss_pred             ccCCeEEEEeC-CcccHHHH
Q psy16770        210 LTDGRTSFFKE-PSFSVQKM  228 (554)
Q Consensus       210 ~~~g~~~~y~~-g~~~~~~i  228 (554)
                      +++|+++.... ...+.+.|
T Consensus        85 i~~g~~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   85 IKNGKVVWHASHWDITAEAL  104 (105)
T ss_dssp             EETTEEEEEEEGGG-SHHHH
T ss_pred             EECCEEEEECccccCCHHhc
Confidence            99999864432 22344444

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=95.34  E-value=0.031  Score=43.66  Aligned_cols=59  Identities=17%  Similarity=0.334  Sum_probs=42.1

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH----HHHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG----LARRLGVGSQLPQIALLTDGRTSFFKEPS  222 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~----l~~~~~v~~~~Pti~~~~~g~~~~y~~g~  222 (554)
                      ++.|..+||++|++..-.+++       .|+.+..+|..+++.    +.+..+... +|++.  .+|+   +.||.
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~~~~~~~~el~~~~g~~~-vP~v~--i~~~---~iGg~   65 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEINIDIFPERKAELEERTGSSV-VPQIF--FNEK---LVGGL   65 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHHhCCCC-cCEEE--ECCE---EEeCH
Confidence            567899999999887766553       468888999988665    445556675 89874  4564   55664

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=95.32  E-value=0.032  Score=45.39  Aligned_cols=59  Identities=27%  Similarity=0.430  Sum_probs=44.0

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC--------------------------------cHHHHHHh
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--------------------------------EQGLARRL  198 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~--------------------------------~~~l~~~~  198 (554)
                      ++.|+.+.|++|..+.+.++++.....+ ++.+..+...-                                +..++++.
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   79 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARAL   79 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHc
Confidence            4679999999999999999998755544 46666554321                                23567788


Q ss_pred             CCcCCCCcceecc
Q psy16770        199 GVGSQLPQIALLT  211 (554)
Q Consensus       199 ~v~~~~Pti~~~~  211 (554)
                      |+.| +||+++..
T Consensus        80 g~~g-~Pt~v~~~   91 (98)
T cd02972          80 GVTG-TPTFVVNG   91 (98)
T ss_pred             CCCC-CCEEEECC
Confidence            9998 99998854

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>KOG0431|consensus

Probab=95.18  E-value=0.034  Score=59.35  Aligned_cols=49  Identities=27%  Similarity=0.488  Sum_probs=37.2

Q ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--------HHHHHHHHHHHHHH
Q psy16770         22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT--------AQEKFLQLTEAYNI   70 (554)
Q Consensus        22 y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~--------~~~~~~~i~~Ay~~   70 (554)
                      |+=.++.--.+.++|||+|||.++..||||.+..+        +++-|..+++|+.-
T Consensus       391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~  447 (453)
T KOG0431|consen  391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK  447 (453)
T ss_pred             cccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence            44557777889999999999999999999986543        34456666666653

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=95.15  E-value=0.036  Score=44.46  Aligned_cols=78  Identities=14%  Similarity=0.276  Sum_probs=55.5

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCC--eEEEEeCCcccHHHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG--RTSFFKEPSFSVQKM  228 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g--~~~~y~~g~~~~~~i  228 (554)
                      ++.|..+.|+-|..+....+++...   .++.+-.||.+.++.+..+|+..  +|.+.+-..+  .......++.+.+.|
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~~d~~l~~~Y~~~--IPVl~~~~~~~~~~~~~~~~~~d~~~L   76 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDIDEDPELFEKYGYR--IPVLHIDGIRQFKEQEELKWRFDEEQL   76 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETTTTHHHHHHSCTS--TSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECCCCHHHHHHhcCC--CCEEEEcCcccccccceeCCCCCHHHH
Confidence            6789999999999888777765443   25899999999999999999974  8997764311  101222244688999


Q ss_pred             HHHHH
Q psy16770        229 VEFFR  233 (554)
Q Consensus       229 ~~fl~  233 (554)
                      .+|++
T Consensus        77 ~~~L~   81 (81)
T PF05768_consen   77 RAWLE   81 (81)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            98874

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=94.92  E-value=0.046  Score=45.71  Aligned_cols=59  Identities=20%  Similarity=0.388  Sum_probs=38.7

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH-------HHHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG-------LARRLGVGSQLPQIALLTDGRTSFFKEPS  222 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~-------l~~~~~v~~~~Pti~~~~~g~~~~y~~g~  222 (554)
                      ++.|..+||++|.+....+.+       .++.+..+|.+.++.       +.+..|... +|.+  |.+|+   +.||.
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~-------~~i~~~~vdid~~~~~~~~~~~l~~~tg~~t-vP~V--fi~g~---~iGG~   75 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLT-------LGVNPAVHEIDKEPAGKDIENALSRLGCSPA-VPAV--FVGGK---LVGGL   75 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cCCCCEEEEcCCCccHHHHHHHHHHhcCCCC-cCeE--EECCE---EEcCH
Confidence            566999999999987765543       256666777766532       333346675 8986  55674   44675

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PHA03050 glutaredoxin; Provisional

Probab=94.82  E-value=0.039  Score=46.92  Aligned_cols=62  Identities=16%  Similarity=0.206  Sum_probs=39.1

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---c----HHHHHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---E----QGLARRLGVGSQLPQIALLTDGRTSFFKEPS  222 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---~----~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~  222 (554)
                      ++.|..+|||+|++....+++..-+.    -.+..+|.++   .    ..+-+.-|.+. +|++  |.+|+.   .||.
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~----~~~~~i~i~~~~~~~~~~~~l~~~tG~~t-VP~I--fI~g~~---iGG~   83 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKR----GAYEIVDIKEFKPENELRDYFEQITGGRT-VPRI--FFGKTS---IGGY   83 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCc----CCcEEEECCCCCCCHHHHHHHHHHcCCCC-cCEE--EECCEE---EeCh
Confidence            66799999999998877666432111    1455566654   2    23555567776 9998  446653   4665

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=94.79  E-value=0.27  Score=45.73  Aligned_cols=100  Identities=11%  Similarity=0.028  Sum_probs=61.1

Q ss_pred             cccCCc-ccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        241 IVPLSA-TNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       241 v~~~t~-~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      +..++. +++.+.+... +.+.++|+.|.....++....     .++..+ ..++|..++++.  . .++.+|+|.. .|
T Consensus        64 v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~-~~vkF~kVd~d~--~-~l~~~f~v~~-vP  137 (175)
T cd02987          64 VYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY-PAVKFCKIRASA--T-GASDEFDTDA-LP  137 (175)
T ss_pred             EEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHC-CCeEEEEEeccc--h-hhHHhCCCCC-CC
Confidence            445555 7777666431 123477777755443333222     122243 579999998862  3 7999999997 99


Q ss_pred             eEEEEeCCCCCCCce-----eecCCCChhHHHhHHhcC
Q psy16770        315 SLLIFKEDKDRPSAS-----ITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       315 tlvvfk~~~~~~~~~-----i~~~~~~~~~l~~fi~~~  347 (554)
                      |+++|+++... ...     .-..+++...|..++..+
T Consensus       138 Tlllyk~G~~v-~~~vG~~~~~g~~f~~~~le~~L~~~  174 (175)
T cd02987         138 ALLVYKGGELI-GNFVRVTEDLGEDFDAEDLESFLVEY  174 (175)
T ss_pred             EEEEEECCEEE-EEEechHHhcCCCCCHHHHHHHHHhc
Confidence            99999984321 111     112367778888877643

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=94.74  E-value=0.17  Score=50.02  Aligned_cols=84  Identities=19%  Similarity=0.232  Sum_probs=54.3

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEE--------------------------------------
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV--------------------------------------  186 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~V--------------------------------------  186 (554)
                      ...+..++.|.-+.|++|+++.+...+..+.  + ++.+-.+                                      
T Consensus       115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~  191 (251)
T PRK11657        115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS--G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL  191 (251)
T ss_pred             CCCCeEEEEEECCCChhHHHHHHHHHHHhhc--C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence            3456788899999999999998876654322  1 1221111                                      


Q ss_pred             --------Eec----CcHHHHHHhCCcCCCCcceecc-CCeEEEEeCCcccHHHHHHHHH
Q psy16770        187 --------HVH----NEQGLARRLGVGSQLPQIALLT-DGRTSFFKEPSFSVQKMVEFFR  233 (554)
Q Consensus       187 --------d~~----~~~~l~~~~~v~~~~Pti~~~~-~g~~~~y~~g~~~~~~i~~fl~  233 (554)
                              +|.    ++..+++++||+| .|++++-. +|.+.... |..+.+.|.+.+.
T Consensus       192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~G-TPaiv~~d~~G~~~~v~-G~~~~~~L~~~l~  249 (251)
T PRK11657        192 KPPASIPAAVRKQLADNQKLMDDLGANA-TPAIYYMDKDGTLQQVV-GLPDPAQLAEIMG  249 (251)
T ss_pred             CccccCCHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCCEEEec-CCCCHHHHHHHhC
Confidence                    011    1345788999998 99999874 46544444 5557788877653

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=94.72  E-value=0.17  Score=41.68  Aligned_cols=98  Identities=13%  Similarity=0.149  Sum_probs=62.8

Q ss_pred             cCCc-ccHHHHHhhhhcCCceEEEEEecCCc--hhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCC----CCCc
Q psy16770        243 PLSA-TNVDAFLDNWREDNKVHALLFQRSLP--VRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVP----GDKD  314 (554)
Q Consensus       243 ~~t~-~~~~~fl~~~~~~~~~~v~~f~~~~~--~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~----~~~P  314 (554)
                      .+++ .++.+.+.   ..+.+.+++..+..+  ..+..+..++ ..++.-..++++|+..+...+|++++++    +..-
T Consensus         5 ~i~d~KdfKKLLR---Tr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~   81 (112)
T cd03067           5 DISDHKDFKKLLR---TRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPV   81 (112)
T ss_pred             cccchHHHHHHHh---hcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcc
Confidence            3433 66777774   345566665544332  3455555555 6788899999999977788999999998    4222


Q ss_pred             eEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        315 SLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +|.-|+++.-   +.-|...++...|..|++.
T Consensus        82 ~LkHYKdG~f---HkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          82 ELKHYKDGDF---HTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             hhhcccCCCc---cccccchhhHHHHHHHhhC
Confidence            4445555332   1235666677778887763

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>KOG0907|consensus

Probab=94.68  E-value=0.23  Score=42.04  Aligned_cols=62  Identities=18%  Similarity=0.211  Sum_probs=45.5

Q ss_pred             CCceEEEEEecCCch-----hHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCC
Q psy16770        259 DNKVHALLFQRSLPV-----RLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKD  324 (554)
Q Consensus       259 ~~~~~v~~f~~~~~~-----~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~  324 (554)
                      .++.+|+.|...--+     ...+-.++.++.+ +.|..+|++.  ..+++++++|.. .||+++||++..
T Consensus        20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde--~~~~~~~~~V~~-~PTf~f~k~g~~   86 (106)
T KOG0907|consen   20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE--LEEVAKEFNVKA-MPTFVFYKGGEE   86 (106)
T ss_pred             CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc--CHhHHHhcCceE-eeEEEEEECCEE
Confidence            457777777433222     2344445556666 9999999985  899999999997 999999998544

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=94.63  E-value=0.38  Score=42.92  Aligned_cols=75  Identities=11%  Similarity=0.105  Sum_probs=51.1

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEE
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF  319 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvf  319 (554)
                      |.+++++.+..  +.++++++-|...-.++.+...     .+.++.+.+.|..+|++  .+++++++|+|....|++.+|
T Consensus        10 s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVD--e~~dla~~y~I~~~~t~~~ff   85 (142)
T PLN00410         10 SGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDIT--EVPDFNTMYELYDPCTVMFFF   85 (142)
T ss_pred             CHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECC--CCHHHHHHcCccCCCcEEEEE
Confidence            55778887754  3577888877655444433322     22245677889999998  789999999999523444488


Q ss_pred             eCCC
Q psy16770        320 KEDK  323 (554)
Q Consensus       320 k~~~  323 (554)
                      |++.
T Consensus        86 k~g~   89 (142)
T PLN00410         86 RNKH   89 (142)
T ss_pred             ECCe
Confidence            8753

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=94.61  E-value=0.24  Score=42.34  Aligned_cols=73  Identities=18%  Similarity=0.142  Sum_probs=52.9

Q ss_pred             ccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeC
Q psy16770        247 TNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKE  321 (554)
Q Consensus       247 ~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~  321 (554)
                      +++++.+..  +.++++|+-|...-.++.+...     .+-++.+.+.|..+|.+  ..+++++.|+|.. -||.++|++
T Consensus         3 ~~~d~~i~~--~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVD--ev~dva~~y~I~a-mPtfvffkn   77 (114)
T cd02986           3 KEVDQAIKS--TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVD--KVPVYTQYFDISY-IPSTIFFFN   77 (114)
T ss_pred             HHHHHHHHh--cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecc--ccHHHHHhcCcee-CcEEEEEEC
Confidence            456666654  3588899988776665544432     22245445999999998  7899999999986 899999997


Q ss_pred             CCC
Q psy16770        322 DKD  324 (554)
Q Consensus       322 ~~~  324 (554)
                      +..
T Consensus        78 gkh   80 (114)
T cd02986          78 GQH   80 (114)
T ss_pred             CcE
Confidence            543

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=94.40  E-value=0.44  Score=40.73  Aligned_cols=56  Identities=4%  Similarity=0.108  Sum_probs=42.0

Q ss_pred             CceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770        286 TTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       286 ~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~  345 (554)
                      +.+.|..++.+  ..++++++|+|.+ .||+++|+++...- ...+.|-.+...+.+||.
T Consensus        52 ~~i~~~~vd~d--~~~~l~~~~~v~~-vPt~~i~~~g~~~~-~~~~~G~~~~~el~~~i~  107 (113)
T cd02975          52 DKLKLEIYDFD--EDKEKAEKYGVER-VPTTIFLQDGGKDG-GIRYYGLPAGYEFASLIE  107 (113)
T ss_pred             CceEEEEEeCC--cCHHHHHHcCCCc-CCEEEEEeCCeecc-eEEEEecCchHHHHHHHH
Confidence            67899999887  6889999999997 99999998753321 124556556667777765

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.39  E-value=0.029  Score=52.14  Aligned_cols=66  Identities=27%  Similarity=0.492  Sum_probs=52.3

Q ss_pred             CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHHcCChHHHHhhhccCC
Q psy16770         20 DPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPT------AQEKFLQLTEAYNILSDAERRKQYDLFGT   85 (554)
Q Consensus        20 d~y~~Lgv~~~a--~~~~ik~ay~~l~~~~hPd~~~~~~------~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~   85 (554)
                      |++.++|..+.+  ..+.++..|+.+.+.+|||+.....      +.+++..++.||.+|.+|-.|..|=..-.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            456666776655  4557999999999999999986422      34578999999999999999999986444

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=94.07  E-value=0.11  Score=42.54  Aligned_cols=62  Identities=19%  Similarity=0.346  Sum_probs=40.0

Q ss_pred             CcEEEEEEc----ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHH----HHHhCCcCCCCcceeccCCeEEEEe
Q psy16770        148 TPHLILFYS----DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGL----ARRLGVGSQLPQIALLTDGRTSFFK  219 (554)
Q Consensus       148 ~~~lV~Fya----~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l----~~~~~v~~~~Pti~~~~~g~~~~y~  219 (554)
                      .+++|.-.+    |||++|++....+.       ..++.+..+|...++++    .+..|... +|.+  |.+|+   +.
T Consensus         8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~-------~~~i~y~~idv~~~~~~~~~l~~~~g~~t-vP~v--fi~g~---~i   74 (90)
T cd03028           8 NPVVLFMKGTPEEPRCGFSRKVVQILN-------QLGVDFGTFDILEDEEVRQGLKEYSNWPT-FPQL--YVNGE---LV   74 (90)
T ss_pred             CCEEEEEcCCCCCCCCcHHHHHHHHHH-------HcCCCeEEEEcCCCHHHHHHHHHHhCCCC-CCEE--EECCE---EE
Confidence            355553332    79999987665544       33678888888776654    34457675 9987  45675   44


Q ss_pred             CCc
Q psy16770        220 EPS  222 (554)
Q Consensus       220 ~g~  222 (554)
                      ||.
T Consensus        75 GG~   77 (90)
T cd03028          75 GGC   77 (90)
T ss_pred             eCH
Confidence            664

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=93.75  E-value=0.095  Score=41.92  Aligned_cols=65  Identities=17%  Similarity=0.414  Sum_probs=41.9

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-----HHHHHh-CCcCCCCcceeccCCeEEEEeCCccc
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-----GLARRL-GVGSQLPQIALLTDGRTSFFKEPSFS  224 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-----~l~~~~-~v~~~~Pti~~~~~g~~~~y~~g~~~  224 (554)
                      ++.|..++|++|++....+.       ..|+.+..+|.+.+.     +..++- |.+. +|.|.+  +|+   ..||..+
T Consensus         3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~t-vP~I~i--~~~---~igg~~d   69 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRGKGQRT-VPQIFI--GGK---HVGGCDD   69 (80)
T ss_pred             EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHhCCCCC-cCEEEE--CCE---EEeCccc
Confidence            56688899999987665444       446888888887765     233444 6776 998766  454   3344334


Q ss_pred             HHHH
Q psy16770        225 VQKM  228 (554)
Q Consensus       225 ~~~i  228 (554)
                      .+.+
T Consensus        70 ~~~~   73 (80)
T COG0695          70 LDAL   73 (80)
T ss_pred             HHHH
Confidence            3443

>PTZ00062 glutaredoxin; Provisional

Probab=93.71  E-value=1.8  Score=41.22  Aligned_cols=164  Identities=9%  Similarity=0.084  Sum_probs=87.0

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh----ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEe
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF----KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFK  320 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~----~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk  320 (554)
                      +.+++.+.+++   +....|++|...-.++.+.....+    +-.+.+.|..|+.      +    |+|.. .|++++|+
T Consensus         5 ~~ee~~~~i~~---~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~------d----~~V~~-vPtfv~~~   70 (204)
T PTZ00062          5 KKEEKDKLIES---NTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNL------A----DANNE-YGVFEFYQ   70 (204)
T ss_pred             CHHHHHHHHhc---CCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEcc------c----cCccc-ceEEEEEE
Confidence            45667777642   236677778655444433332222    2236799999953      2    99997 99999999


Q ss_pred             CCCCCCCceeecCCCChhHHHhHHhcCCCcccccccchhhhhhcCCCCceEEEEEcCCC--CcchhHHHHHHHHHhhccC
Q psy16770        321 EDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDS--PEHDASRHTLRRFAQESRF  398 (554)
Q Consensus       321 ~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~c~~~~lcvvl~~~~~--~~~~~~~~~l~~~a~~~~~  398 (554)
                      ++..  ...+.  .-....|..++..+.-..-.+-. ....+.+.. .+. |++|..+.  ..........+++-++  .
T Consensus        71 ~g~~--i~r~~--G~~~~~~~~~~~~~~~~~~~~~~-~~~v~~li~-~~~-Vvvf~Kg~~~~p~C~~C~~~k~~L~~--~  141 (204)
T PTZ00062         71 NSQL--INSLE--GCNTSTLVSFIRGWAQKGSSEDT-VEKIERLIR-NHK-ILLFMKGSKTFPFCRFSNAVVNMLNS--S  141 (204)
T ss_pred             CCEE--Eeeee--CCCHHHHHHHHHHHcCCCCHHHH-HHHHHHHHh-cCC-EEEEEccCCCCCCChhHHHHHHHHHH--c
Confidence            7543  12222  22445566666554332211111 122333332 233 34454432  1334455555555555  2


Q ss_pred             CCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEE
Q psy16770        399 VHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWR  438 (554)
Q Consensus       399 ~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~  438 (554)
                         .+.|..+|..+..+..+.+...+   + .+.+|.|++
T Consensus       142 ---~i~y~~~DI~~d~~~~~~l~~~s---g-~~TvPqVfI  174 (204)
T PTZ00062        142 ---GVKYETYNIFEDPDLREELKVYS---N-WPTYPQLYV  174 (204)
T ss_pred             ---CCCEEEEEcCCCHHHHHHHHHHh---C-CCCCCeEEE
Confidence               36788888877666655552111   1 257787766

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=93.55  E-value=0.091  Score=47.00  Aligned_cols=41  Identities=20%  Similarity=0.322  Sum_probs=32.0

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV  188 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~  188 (554)
                      ..++.+++|+.++|++|+++.|.++++...+.  ++.+...+.
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~~~   44 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP--DVRVVFKEF   44 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC--CceEEEEeC
Confidence            46688999999999999999999998877664  355554443

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=93.47  E-value=1  Score=49.42  Aligned_cols=169  Identities=7%  Similarity=0.015  Sum_probs=99.8

Q ss_pred             CcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeE--EEEeCCcccH
Q psy16770        148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRT--SFFKEPSFSV  225 (554)
Q Consensus       148 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~--~~y~~g~~~~  225 (554)
                      +++-+.++.+.|..|..+....+++++.-.  ++.+...+..           .. .|++.+..+|+.  +.|+|-+ .=
T Consensus        19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--~i~~~~~~~~-----------~~-~p~~~~~~~~~~~~i~f~g~P-~g   83 (517)
T PRK15317         19 RPIELVASLDDSEKSAELKELLEEIASLSD--KITVEEDSLD-----------VR-KPSFSITRPGEDTGVRFAGIP-MG   83 (517)
T ss_pred             CCEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEEccCC-----------CC-CCEEEEEcCCccceEEEEecC-cc
Confidence            345455555689999998888888877653  3555332211           44 899999876643  6777643 44


Q ss_pred             HHHHHHHHHh---CCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhH---HHHHHhh-ccCCceEEEEEEccCC
Q psy16770        226 QKMVEFFRLK---LPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRL---RYLINAF-KHRTTIVFGVIVYDQE  298 (554)
Q Consensus       226 ~~i~~fl~~~---~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~---~~~~~a~-~~~~~v~Fg~v~~~~~  298 (554)
                      .++..|+...   .++.  ..++++.. +.+...  +.+..+..|....-+..   ...+..+ ...+++.+-.++..  
T Consensus        84 ~Ef~s~i~~i~~~~~~~--~~l~~~~~-~~i~~~--~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~--  156 (517)
T PRK15317         84 HEFTSLVLALLQVGGHP--PKLDQEVI-EQIKAL--DGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGA--  156 (517)
T ss_pred             HHHHHHHHHHHHhcCCC--CCCCHHHH-HHHHhc--CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEch--
Confidence            6666666543   3433  33444433 344432  34444556644333322   2222222 34578999888776  


Q ss_pred             CChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        299 DSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       299 ~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      ..++++++|++.. .|++++ ++  +    .+..+..+...+.+.+..
T Consensus       157 ~~~~~~~~~~v~~-VP~~~i-~~--~----~~~~g~~~~~~~~~~~~~  196 (517)
T PRK15317        157 LFQDEVEARNIMA-VPTVFL-NG--E----EFGQGRMTLEEILAKLDT  196 (517)
T ss_pred             hCHhHHHhcCCcc-cCEEEE-CC--c----EEEecCCCHHHHHHHHhc
Confidence            7899999999996 999976 21  1    345566666656555543

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=93.34  E-value=0.14  Score=44.66  Aligned_cols=56  Identities=23%  Similarity=0.241  Sum_probs=41.7

Q ss_pred             CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHH
Q psy16770         20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRK   78 (554)
Q Consensus        20 d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~   78 (554)
                      ...+||||++..+.++|.+.|.+|-...+|++.   +..---.+|..|.+.|..+.+..
T Consensus        59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El~~~  114 (127)
T PF03656_consen   59 EARQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQELKEE  114 (127)
T ss_dssp             HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999987   44566677899999988665443

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=93.20  E-value=0.35  Score=42.05  Aligned_cols=75  Identities=13%  Similarity=0.304  Sum_probs=59.8

Q ss_pred             cccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc-ceeccCCeEE
Q psy16770        138 EKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ-IALLTDGRTS  216 (554)
Q Consensus       138 ~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt-i~~~~~g~~~  216 (554)
                      +.+|+. ..++.++|-|-.+|.+.|.++-..+.++++.++.. ..+..||.++-+++.+-|.+.  -|+ +.+|-+++.+
T Consensus        12 DqAI~~-e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~~Vpdfn~~yel~--dP~tvmFF~rnkhm   87 (133)
T PF02966_consen   12 DQAILS-EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDIDEVPDFNQMYELY--DPCTVMFFFRNKHM   87 (133)
T ss_dssp             HHHHHH--SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTTTHCCHHHTTS---SSEEEEEEETTEEE
T ss_pred             HHHHhc-cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcccchhhhcccccC--CCeEEEEEecCeEE
Confidence            344432 46789999999999999999999999999999986 899999999999999999997  475 5555455553

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>PRK10638 glutaredoxin 3; Provisional

Probab=93.05  E-value=0.18  Score=40.46  Aligned_cols=65  Identities=17%  Similarity=0.384  Sum_probs=42.7

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHH----HHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGL----ARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ  226 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l----~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~  226 (554)
                      ++.|..+||++|.+..-.+++       .++.+..+|++.+...    .+..|... +|++.  .+|+   +.||.   +
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~~~~~~~l~~~~g~~~-vP~i~--~~g~---~igG~---~   67 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPIDGDAAKREEMIKRSGRTT-VPQIF--IDAQ---HIGGC---D   67 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECCCCHHHHHHHHHHhCCCC-cCEEE--ECCE---EEeCH---H
Confidence            556778999999987765553       3577888888776543    44456775 99874  3664   44564   4


Q ss_pred             HHHHH
Q psy16770        227 KMVEF  231 (554)
Q Consensus       227 ~i~~f  231 (554)
                      ++..+
T Consensus        68 ~~~~~   72 (83)
T PRK10638         68 DLYAL   72 (83)
T ss_pred             HHHHH
Confidence            44443

>PRK10824 glutaredoxin-4; Provisional

Probab=92.72  E-value=0.21  Score=42.87  Aligned_cols=55  Identities=18%  Similarity=0.208  Sum_probs=33.3

Q ss_pred             ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhC-CcCCCCcc-eeccCCeEEEEeCCc
Q psy16770        157 DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLG-VGSQLPQI-ALLTDGRTSFFKEPS  222 (554)
Q Consensus       157 ~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~-v~~~~Pti-~~~~~g~~~~y~~g~  222 (554)
                      |||++|++....+.+.       ++.+..+|...+.++...+. .++ .||+ .+|.+|+.   .||.
T Consensus        28 p~Cpyc~~ak~lL~~~-------~i~~~~idi~~d~~~~~~l~~~sg-~~TVPQIFI~G~~---IGG~   84 (115)
T PRK10824         28 PSCGFSAQAVQALSAC-------GERFAYVDILQNPDIRAELPKYAN-WPTFPQLWVDGEL---VGGC   84 (115)
T ss_pred             CCCchHHHHHHHHHHc-------CCCceEEEecCCHHHHHHHHHHhC-CCCCCeEEECCEE---EcCh
Confidence            6999998876655542       46666778777665544332 122 4443 45667854   4775

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=92.70  E-value=1.1  Score=38.90  Aligned_cols=85  Identities=14%  Similarity=0.124  Sum_probs=53.1

Q ss_pred             cCC-ceEEEEEecCCchhHHHHH--------HhhccCCceEEEEEEccCC-----------CChhHHhHhCCCCCCceEE
Q psy16770        258 EDN-KVHALLFQRSLPVRLRYLI--------NAFKHRTTIVFGVIVYDQE-----------DSSSVFQRFKVPGDKDSLL  317 (554)
Q Consensus       258 ~~~-~~~v~~f~~~~~~~~~~~~--------~a~~~~~~v~Fg~v~~~~~-----------~~~~l~~k~~i~~~~Ptlv  317 (554)
                      ..+ +++++.|....-+..+...        ....+.+.+.+..++.+..           ...+++.+|+|.+ .||++
T Consensus        11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~-~Pt~~   89 (125)
T cd02951          11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF-TPTVI   89 (125)
T ss_pred             HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc-ccEEE
Confidence            356 7888888655444333322        1112345677777776532           1368899999997 99999


Q ss_pred             EEeCC-CCCCCceeecCCCChhHHHhHHh
Q psy16770        318 IFKED-KDRPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       318 vfk~~-~~~~~~~i~~~~~~~~~l~~fi~  345 (554)
                      +|.++ .+ .. ....|.++.+.+..+|+
T Consensus        90 ~~~~~gg~-~~-~~~~G~~~~~~~~~~l~  116 (125)
T cd02951          90 FLDPEGGK-EI-ARLPGYLPPDEFLAYLE  116 (125)
T ss_pred             EEcCCCCc-ee-EEecCCCCHHHHHHHHH
Confidence            99875 33 22 34566667676766665

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>KOG1731|consensus

Probab=92.64  E-value=0.088  Score=56.33  Aligned_cols=67  Identities=19%  Similarity=0.414  Sum_probs=56.8

Q ss_pred             ccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCC
Q psy16770        247 TNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKED  322 (554)
Q Consensus       247 ~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~  322 (554)
                      .-+.+|++.||++++..+..|.+        ++... .++.-+.++.|||....+..+|+.|+|+. +|+|..|+++
T Consensus        59 ~~lVEFy~swCGhCr~FAPtfk~--------~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~-~Ptlryf~~~  126 (606)
T KOG1731|consen   59 AKLVEFYNSWCGHCRAFAPTFKK--------FAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG-YPTLRYFPPD  126 (606)
T ss_pred             hHHHHHHHhhhhhhhhcchHHHH--------HHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC-CceeeecCCc
Confidence            45678999999999887666643        55555 67888999999999989999999999997 9999999875

>KOG3170|consensus

Probab=91.93  E-value=0.17  Score=46.84  Aligned_cols=81  Identities=11%  Similarity=0.156  Sum_probs=63.6

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      |..++..+|.+.|...+.+-.++|..|...-+.|.-+...++.+|..+..  ++|+++=++..   ..-|-=.. .|||+
T Consensus        93 V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~at~c---IpNYPe~n-lPTl~  166 (240)
T KOG3170|consen   93 VFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIPATTC---IPNYPESN-LPTLL  166 (240)
T ss_pred             eeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecccccc---cCCCcccC-CCeEE
Confidence            77788888888887777777888999999999999999999999999874  78887765442   01133344 89999


Q ss_pred             eccCCeE
Q psy16770        209 LLTDGRT  215 (554)
Q Consensus       209 ~~~~g~~  215 (554)
                      +|..|..
T Consensus       167 VY~~G~l  173 (240)
T KOG3170|consen  167 VYHHGAL  173 (240)
T ss_pred             EeecchH
Confidence            9988853

>KOG2640|consensus

Probab=91.70  E-value=0.087  Score=52.25  Aligned_cols=92  Identities=18%  Similarity=0.286  Sum_probs=69.8

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCccc
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFS  224 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~  224 (554)
                      ++..++-+.||+.||+..+...|.+.-....+.. .-.++.=+-...+.+.+++|+.+ .|++.+...--+..|.|. +.
T Consensus        74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~-~ps~~~~n~t~~~~~~~~-r~  150 (319)
T KOG2640|consen   74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHS-EPSNLMLNQTCPASYRGE-RD  150 (319)
T ss_pred             ccCCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhcccccc-CCcceeeccccchhhccc-cc
Confidence            3455777889999999999999999877666652 12333112233567889999997 999999877777788865 58


Q ss_pred             HHHHHHHHHHhCCCC
Q psy16770        225 VQKMVEFFRLKLPYK  239 (554)
Q Consensus       225 ~~~i~~fl~~~~~~~  239 (554)
                      ..+|++|..+.++-.
T Consensus       151 l~sLv~fy~~i~~~~  165 (319)
T KOG2640|consen  151 LASLVNFYTEITPMS  165 (319)
T ss_pred             HHHHHHHHHhhccch
Confidence            899999999998754

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=91.57  E-value=0.34  Score=40.29  Aligned_cols=53  Identities=23%  Similarity=0.310  Sum_probs=35.6

Q ss_pred             ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHH----HHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770        157 DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA----RRLGVGSQLPQIALLTDGRTSFFKEPS  222 (554)
Q Consensus       157 ~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~----~~~~v~~~~Pti~~~~~g~~~~y~~g~  222 (554)
                      |||++|.+....+.+       .|+.+..+|...++.+.    +.-|... +|.+  |.+|+   +.||.
T Consensus        25 ~~Cp~C~~ak~lL~~-------~~i~~~~~di~~~~~~~~~l~~~tg~~t-vP~v--fi~g~---~iGG~   81 (97)
T TIGR00365        25 PQCGFSARAVQILKA-------CGVPFAYVNVLEDPEIRQGIKEYSNWPT-IPQL--YVKGE---FVGGC   81 (97)
T ss_pred             CCCchHHHHHHHHHH-------cCCCEEEEECCCCHHHHHHHHHHhCCCC-CCEE--EECCE---EEeCh
Confidence            999999887655553       35778888987766443    3445565 8876  45674   45664

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=91.18  E-value=4.5  Score=44.41  Aligned_cols=167  Identities=8%  Similarity=0.068  Sum_probs=95.7

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCe--EEEEeCCcccHH
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR--TSFFKEPSFSVQ  226 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~--~~~y~~g~~~~~  226 (554)
                      ++-+.++.+.|..|..+....+++++.-.  ++.+..-+..          ... .|++.+..+|+  -+.|+|-+ .=.
T Consensus        20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--ki~~~~~~~~----------~~~-~p~~~~~~~~~~~~i~f~g~P-~g~   85 (515)
T TIGR03140        20 PVTLVLSAGSHEKSKELLELLDEIASLSD--KISLTQNTAD----------TLR-KPSFTILRDGADTGIRFAGIP-GGH   85 (515)
T ss_pred             CEEEEEEeCCCchhHHHHHHHHHHHHhCC--CeEEEEecCC----------cCC-CCeEEEecCCcccceEEEecC-CcH
Confidence            44444444479999888887777776543  3555433311          243 89998887765  36777643 335


Q ss_pred             HHHHHHHH---hCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchh---HHHHHHhh-ccCCceEEEEEEccCCC
Q psy16770        227 KMVEFFRL---KLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVR---LRYLINAF-KHRTTIVFGVIVYDQED  299 (554)
Q Consensus       227 ~i~~fl~~---~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~---~~~~~~a~-~~~~~v~Fg~v~~~~~~  299 (554)
                      ++..|+..   ..++.  ..++++..+ .++..  +.+..+-.|....-+.   ....+..+ ...+++..-.++..  .
T Consensus        86 Ef~s~i~~i~~~~~~~--~~l~~~~~~-~~~~~--~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~--~  158 (515)
T TIGR03140        86 EFTSLVLAILQVGGHG--PKLDEGIID-RIRRL--NGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGA--L  158 (515)
T ss_pred             HHHHHHHHHHHhcCCC--CCCCHHHHH-HHHhc--CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEch--h
Confidence            56556554   44443  344444443 34332  3444455564333222   22222222 33568888888776  7


Q ss_pred             ChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770        300 SSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDIT  344 (554)
Q Consensus       300 ~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi  344 (554)
                      .++++++|++.. .|++++ ++  +    .+..+..+...+.+.+
T Consensus       159 ~~~~~~~~~v~~-VP~~~i-~~--~----~~~~g~~~~~~~~~~l  195 (515)
T TIGR03140       159 FQDEVEALGIQG-VPAVFL-NG--E----EFHNGRMDLAELLEKL  195 (515)
T ss_pred             CHHHHHhcCCcc-cCEEEE-CC--c----EEEecCCCHHHHHHHH
Confidence            899999999996 999986 21  1    2344555555554444

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=91.14  E-value=1.1  Score=38.92  Aligned_cols=97  Identities=16%  Similarity=0.173  Sum_probs=57.2

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh---ccCCceEEEEEEccCCCC---------hhHHhHhCCC
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF---KHRTTIVFGVIVYDQEDS---------SSVFQRFKVP  310 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~---~~~~~v~Fg~v~~~~~~~---------~~l~~k~~i~  310 (554)
                      .+|.+++.+.++    .++..+++|....-+..+.+.-.+   .-+..+.|.+++.+....         .++.++|++.
T Consensus        10 ~it~~~~~~~i~----~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~   85 (122)
T TIGR01295        10 VTTVVRALEALD----KKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP   85 (122)
T ss_pred             ecCHHHHHHHHH----cCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence            456666776663    466778888665555544433222   113567788998763211         1455676654


Q ss_pred             C---CCceEEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770        311 G---DKDSLLIFKEDKDRPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       311 ~---~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~  345 (554)
                      .   ..||+++|+++...  ........+.+.|.+|+.
T Consensus        86 ~~i~~~PT~v~~k~Gk~v--~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        86 TSFMGTPTFVHITDGKQV--SVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             ccCCCCCEEEEEeCCeEE--EEEeCCCCCHHHHHHHhh
Confidence            1   28999999986442  122233556778887764

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=90.34  E-value=0.37  Score=44.38  Aligned_cols=42  Identities=33%  Similarity=0.560  Sum_probs=34.5

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV  188 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~  188 (554)
                      ..++.++.|+.+.|+||+++++...++.+++.+ ++.+..+..
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~~~   55 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKVPV   55 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEcCC
Confidence            467889999999999999999999999888854 466655544

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=89.86  E-value=1.9  Score=47.98  Aligned_cols=101  Identities=10%  Similarity=0.113  Sum_probs=62.4

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH------hh-ccCCceEEEEEEccCC--CChhHHhHhCCCCCCce
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN------AF-KHRTTIVFGVIVYDQE--DSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~------a~-~~~~~v~Fg~v~~~~~--~~~~l~~k~~i~~~~Pt  315 (554)
                      +.+++++.++.....++++++.|...--...+....      .. +..+++.+..+|.+..  .+.+++++|++.+ .|+
T Consensus       459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g-~Pt  537 (571)
T PRK00293        459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLG-LPT  537 (571)
T ss_pred             CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCC-CCE
Confidence            446666666543345678888885443333322211      11 1124577888887642  2467899999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++.+........+..+.+.+.+++++
T Consensus       538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~  568 (571)
T PRK00293        538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ  568 (571)
T ss_pred             EEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence            9999865443212344567788888887765

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=89.64  E-value=2.9  Score=39.45  Aligned_cols=110  Identities=15%  Similarity=0.163  Sum_probs=67.2

Q ss_pred             cCCCcccccccchhhhhhcCCCC--ceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCC
Q psy16770        346 NNPYLTLPRISSQSMLDAVCPVK--KLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTS  422 (554)
Q Consensus       346 ~~~~~~v~~lt~~~~~~~~c~~~--~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~  422 (554)
                      ..++..+.+++..++...+....  ..+||.|. +....+....+.|.++|++  |.  .++|+.|++++.   ...|  
T Consensus        78 ~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k--~~--~vkFvkI~ad~~---~~~~--  148 (192)
T cd02988          78 KSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARK--FP--DTKFVKIISTQC---IPNY--  148 (192)
T ss_pred             hCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHH--CC--CCEEEEEEhHHh---HhhC--
Confidence            34567777788777776554322  46777665 5556778888899999999  84  489999999642   3444  


Q ss_pred             CCCCccccceEEEEEEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHh
Q psy16770        423 PEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRS  473 (554)
Q Consensus       423 ~~~~~~~~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~  473 (554)
                           . ...+|.+..... +....-+-|.  .++.+.++|.+.|+.+|.+
T Consensus       149 -----~-i~~lPTlliyk~-G~~v~~ivG~--~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         149 -----P-DKNLPTILVYRN-GDIVKQFIGL--LEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             -----C-CCCCCEEEEEEC-CEEEEEEeCc--hhhCCCCCCHHHHHHHHHh
Confidence                 1 124554433322 2222222221  1244557899999888764

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=88.91  E-value=2  Score=35.84  Aligned_cols=90  Identities=14%  Similarity=0.284  Sum_probs=60.3

Q ss_pred             ccccccccccCCC-CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceecc
Q psy16770        133 THWNFEKNYIPKS-YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLT  211 (554)
Q Consensus       133 t~~~F~~~v~~~~-~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~  211 (554)
                      |.++.++++   + .+.+.+|-|+..--.   .....|.++|..++. .+.|+..   .+..+..++++.  .|++++++
T Consensus         7 ~~~~~e~~~---~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~---~~~~~~~~~~~~--~~~i~l~~   74 (102)
T cd03066           7 SERELQAFE---NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFAT---FDSKVAKKLGLK--MNEVDFYE   74 (102)
T ss_pred             CHHHHHHHh---cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEE---CcHHHHHHcCCC--CCcEEEeC
Confidence            344566666   3 455667766655333   355689999999965 3677543   355778888875  69999996


Q ss_pred             C-Ce-EEEEeCCcccHHHHHHHHHH
Q psy16770        212 D-GR-TSFFKEPSFSVQKMVEFFRL  234 (554)
Q Consensus       212 ~-g~-~~~y~~g~~~~~~i~~fl~~  234 (554)
                      + .. ...|.+|..+.+.|.+|+..
T Consensus        75 ~~~e~~~~y~~g~~~~~~l~~fi~~   99 (102)
T cd03066          75 PFMEEPVTIPDKPYSEEELVDFVEE   99 (102)
T ss_pred             CCCCCCcccCCCCCCHHHHHHHHHH
Confidence            5 33 34453566688999999974

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>KOG3171|consensus

Probab=88.49  E-value=0.48  Score=44.45  Aligned_cols=84  Identities=17%  Similarity=0.235  Sum_probs=65.6

Q ss_pred             ccccc-cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLSTT-HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~Lt-~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      |++|+ .++|-+.|-..-+....+|..|-|.-.-|..+.....=+|.++-  .++|.+|-.+ +.....+|..++ +||+
T Consensus       140 V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP--~vKFckikss-~~gas~~F~~n~-lP~L  215 (273)
T KOG3171|consen  140 VYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP--IVKFCKIKSS-NTGASDRFSLNV-LPTL  215 (273)
T ss_pred             EEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC--ceeEEEeeec-cccchhhhcccC-CceE
Confidence            66664 57888888544355678899999999999999988888888774  3899988765 344578899997 9999


Q ss_pred             eeccCCeEE
Q psy16770        208 ALLTDGRTS  216 (554)
Q Consensus       208 ~~~~~g~~~  216 (554)
                      .+|++|+.+
T Consensus       216 liYkgGeLI  224 (273)
T KOG3171|consen  216 LIYKGGELI  224 (273)
T ss_pred             EEeeCCchh
Confidence            999988643

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=88.12  E-value=2.2  Score=36.01  Aligned_cols=74  Identities=19%  Similarity=0.202  Sum_probs=48.4

Q ss_pred             ccCCcccHHHHHhhhhcCCceEEEEEecCCc--h---hHH-HH-HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        242 VPLSATNVDAFLDNWREDNKVHALLFQRSLP--V---RLR-YL-INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~--~---~~~-~~-~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      ..++.++++.|++    .....+++|.....  +   ... .. .+...+.+....+.+...  ....+..+|++.. .|
T Consensus        12 ~~vd~~~ld~~l~----~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~--~e~~L~~r~gv~~-~P   84 (107)
T PF07449_consen   12 PRVDADTLDAFLA----APGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARA--AERALAARFGVRR-WP   84 (107)
T ss_dssp             EEE-CCCHHHHHH----CCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHH--HHHHHHHHHT-TS-SS
T ss_pred             eeechhhHHHHHh----CCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECch--hHHHHHHHhCCcc-CC
Confidence            4567788999995    35667788854321  1   111 11 122256778888888633  5788999999997 99


Q ss_pred             eEEEEeCC
Q psy16770        315 SLLIFKED  322 (554)
Q Consensus       315 tlvvfk~~  322 (554)
                      ++++|+++
T Consensus        85 aLvf~R~g   92 (107)
T PF07449_consen   85 ALVFFRDG   92 (107)
T ss_dssp             EEEEEETT
T ss_pred             eEEEEECC
Confidence            99999974

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=87.79  E-value=3.1  Score=36.00  Aligned_cols=75  Identities=16%  Similarity=0.047  Sum_probs=45.9

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEec-------CCchhHHHH-----HHhhccCCceEEEEEEccCC-----CChhHHhHh
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQR-------SLPVRLRYL-----INAFKHRTTIVFGVIVYDQE-----DSSSVFQRF  307 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~-------~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~-----~~~~l~~k~  307 (554)
                      +.+++.+.+..  ..++++++.|..       .--++.+..     ..+.++.+++.|..++++..     .+.++++++
T Consensus         8 ~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~   85 (119)
T cd02952           8 GYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP   85 (119)
T ss_pred             CHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence            34556555543  135677777755       222222211     11224455789999998641     256899999


Q ss_pred             CCC-CCCceEEEEeCC
Q psy16770        308 KVP-GDKDSLLIFKED  322 (554)
Q Consensus       308 ~i~-~~~Ptlvvfk~~  322 (554)
                      +|. + .||+++|+.+
T Consensus        86 ~I~~~-iPT~~~~~~~  100 (119)
T cd02952          86 KLTTG-VPTLLRWKTP  100 (119)
T ss_pred             CcccC-CCEEEEEcCC
Confidence            998 6 9999999653

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=87.65  E-value=0.58  Score=44.73  Aligned_cols=42  Identities=26%  Similarity=0.610  Sum_probs=32.8

Q ss_pred             CCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEec
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVH  189 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~  189 (554)
                      +++-+|+|+.-.|+||.++.|.+   ..+.+.+.+ ++.+..+...
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~~~   81 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYHVE   81 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEeccc
Confidence            35679999999999999999876   667777754 5777776653

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=86.97  E-value=0.78  Score=48.75  Aligned_cols=59  Identities=14%  Similarity=0.210  Sum_probs=40.6

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHH---HH---------hCCcCCCCcceeccCCeEEEE
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA---RR---------LGVGSQLPQIALLTDGRTSFF  218 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~---~~---------~~v~~~~Pti~~~~~g~~~~y  218 (554)
                      ++.|..+||++|++....+.       ..|+.+..||.++++...   ++         .|.++ +|++.+  +|+   +
T Consensus         4 V~vys~~~Cp~C~~aK~~L~-------~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~t-vP~ifi--~~~---~   70 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFG-------ANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRT-VPQIFV--GDV---H   70 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHH-------HCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCc-cCeEEE--CCE---E
Confidence            56799999999987665554       346888889998766322   23         36676 999855  554   4


Q ss_pred             eCCc
Q psy16770        219 KEPS  222 (554)
Q Consensus       219 ~~g~  222 (554)
                      .||.
T Consensus        71 igGf   74 (410)
T PRK12759         71 IGGY   74 (410)
T ss_pred             EeCc
Confidence            4565

>KOG1752|consensus

Probab=86.16  E-value=2.6  Score=35.50  Aligned_cols=63  Identities=14%  Similarity=0.382  Sum_probs=37.7

Q ss_pred             CcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-----HHHHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770        148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-----GLARRLGVGSQLPQIALLTDGRTSFFKEPS  222 (554)
Q Consensus       148 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-----~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~  222 (554)
                      .++ |.|..+||+.|+++...|.+    +. ....+..+|-..+.     .|.+.-|.+. +|.+  |.+|+.+   ||.
T Consensus        14 ~~V-VifSKs~C~~c~~~k~ll~~----~~-v~~~vvELD~~~~g~eiq~~l~~~tg~~t-vP~v--FI~Gk~i---GG~   81 (104)
T KOG1752|consen   14 NPV-VIFSKSSCPYCHRAKELLSD----LG-VNPKVVELDEDEDGSEIQKALKKLTGQRT-VPNV--FIGGKFI---GGA   81 (104)
T ss_pred             CCE-EEEECCcCchHHHHHHHHHh----CC-CCCEEEEccCCCCcHHHHHHHHHhcCCCC-CCEE--EECCEEE---cCH
Confidence            354 45999999999997766665    32 23556666655433     2333334444 7764  5578654   664

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=86.02  E-value=3.5  Score=34.58  Aligned_cols=88  Identities=20%  Similarity=0.280  Sum_probs=57.9

Q ss_pred             cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC-
Q psy16770        134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD-  212 (554)
Q Consensus       134 ~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~-  212 (554)
                      .++.++.+   ..+++.+|-|+..--.   .....|.++|..++. .+.|+...   +..+..++++ +  |++++|+. 
T Consensus         8 ~~~l~~f~---~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~~~~~~~~~~-~--~~ivl~~p~   74 (104)
T cd03069           8 EAEFEKFL---SDDDASVVGFFEDEDS---KLLSEFLKAADTLRE-SFRFAHTS---DKQLLEKYGY-G--EGVVLFRPP   74 (104)
T ss_pred             HHHHHHHh---ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh-cCEEEEEC---hHHHHHhcCC-C--CceEEEech
Confidence            34455555   3456777777755433   466789999999965 36775443   4577888888 6  78888832 


Q ss_pred             -------CeEEEEeCCcccHHHHHHHHHHh
Q psy16770        213 -------GRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       213 -------g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                             .....|.|. .+.+.|.+|+...
T Consensus        75 ~~~~k~de~~~~y~g~-~~~~~l~~fi~~~  103 (104)
T cd03069          75 RLSNKFEDSSVKFDGD-LDSSKIKKFIREN  103 (104)
T ss_pred             hhhcccCcccccccCc-CCHHHHHHHHHhh
Confidence                   223446654 4678999999754

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=85.72  E-value=1.3  Score=40.15  Aligned_cols=53  Identities=21%  Similarity=0.282  Sum_probs=40.8

Q ss_pred             CcEEEEEEcccccccccc-hHHHHHHHHHhCCCCE-EEEEEEecC---cHHHHHHhCC
Q psy16770        148 TPHLILFYSDWCFACLQV-EPIFKKLMDELSPLGV-GFFTVHVHN---EQGLARRLGV  200 (554)
Q Consensus       148 ~~~lV~Fya~wC~~C~~l-~p~~~~~a~~l~~~~v-~~~~Vd~~~---~~~l~~~~~v  200 (554)
                      ..+|+.|-+.||+.|... .+.|.+..++++..|+ .+..|.++.   ..+.++++++
T Consensus        31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~   88 (155)
T cd03013          31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA   88 (155)
T ss_pred             cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence            355555558899999998 9999999999987777 588888776   4456667666

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=85.39  E-value=4.1  Score=35.79  Aligned_cols=77  Identities=17%  Similarity=0.291  Sum_probs=52.1

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCC-CcceeccCCeEEEEeCCcccHHH
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQL-PQIALLTDGRTSFFKEPSFSVQK  227 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~-Pti~~~~~g~~~~y~~g~~~~~~  227 (554)
                      .-++.+++|.||=|....       +.|+..|+.+-.+..+.-..+-+++||..+. -+-....+|..+   .|-.-+++
T Consensus        26 ~~~~vyksPnCGCC~~w~-------~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~v---EGHVPa~a   95 (149)
T COG3019          26 TEMVVYKSPNCGCCDEWA-------QHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYV---EGHVPAEA   95 (149)
T ss_pred             eeEEEEeCCCCccHHHHH-------HHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEE---eccCCHHH
Confidence            346779999999997533       3344457888888888888888889987411 122233467443   35557789


Q ss_pred             HHHHHHHh
Q psy16770        228 MVEFFRLK  235 (554)
Q Consensus       228 i~~fl~~~  235 (554)
                      |..++.+.
T Consensus        96 I~~ll~~~  103 (149)
T COG3019          96 IARLLAEK  103 (149)
T ss_pred             HHHHHhCC
Confidence            98888765

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=85.09  E-value=8.3  Score=30.06  Aligned_cols=77  Identities=16%  Similarity=0.311  Sum_probs=51.5

Q ss_pred             EEEcCCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCCeeEEEecCC
Q psy16770        373 VLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGD  452 (554)
Q Consensus       373 vl~~~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ky~~~~~~  452 (554)
                      ++..+....+....+.+.+++++  ++. .+.+..||.++.++.++.+       . ...+|.+.. +. +.++   .|.
T Consensus         5 ~f~~~~C~~C~~~~~~l~~l~~~--~~~-~~~~~~vd~~~~~~~~~~~-------~-v~~vPt~~~-~g-~~~~---~G~   68 (82)
T TIGR00411         5 LFTSPTCPYCPAAKRVVEEVAKE--MGD-AVEVEYINVMENPQKAMEY-------G-IMAVPAIVI-NG-DVEF---IGA   68 (82)
T ss_pred             EEECCCCcchHHHHHHHHHHHHH--hcC-ceEEEEEeCccCHHHHHHc-------C-CccCCEEEE-CC-EEEE---ecC
Confidence            44456667788889999999988  753 4899999998888887776       1 135676554 22 2233   231


Q ss_pred             CCCcccccchhhHHHHHHHHhh
Q psy16770        453 AVDDWKDYNTTKDRLDAGLRSL  474 (554)
Q Consensus       453 ~~~~~~~~~~t~e~l~~fl~~~  474 (554)
                               .+.+.|.++|++.
T Consensus        69 ---------~~~~~l~~~l~~~   81 (82)
T TIGR00411        69 ---------PTKEELVEAIKKR   81 (82)
T ss_pred             ---------CCHHHHHHHHHhh
Confidence                     2557777777764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=84.83  E-value=3.2  Score=32.31  Aligned_cols=72  Identities=13%  Similarity=0.134  Sum_probs=45.5

Q ss_pred             EEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-HHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHH
Q psy16770        154 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-QGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       154 Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl  232 (554)
                      ++.++|+.|.+..=     +-.+++..+.+..|+.... ..+.+...-. ++|++.  .+|..+.      +...|.+|+
T Consensus         2 y~~~~Sp~~~kv~~-----~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~-~vPvL~--~~g~~l~------dS~~I~~yL   67 (75)
T PF13417_consen    2 YGFPGSPYSQKVRL-----ALEEKGIPYELVPVDPEEKRPEFLKLNPKG-KVPVLV--DDGEVLT------DSAAIIEYL   67 (75)
T ss_dssp             EEETTSHHHHHHHH-----HHHHHTEEEEEEEEBTTSTSHHHHHHSTTS-BSSEEE--ETTEEEE------SHHHHHHHH
T ss_pred             CCcCCChHHHHHHH-----HHHHcCCeEEEeccCcccchhHHHhhcccc-cceEEE--ECCEEEe------CHHHHHHHH
Confidence            67889999988553     3333343455555555443 4455555544 599997  4565332      458999999


Q ss_pred             HHhCCCC
Q psy16770        233 RLKLPYK  239 (554)
Q Consensus       233 ~~~~~~~  239 (554)
                      .++.+.+
T Consensus        68 ~~~~~~~   74 (75)
T PF13417_consen   68 EERYPGP   74 (75)
T ss_dssp             HHHSTSS
T ss_pred             HHHcCCC
Confidence            9887654

...

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=83.86  E-value=10  Score=32.09  Aligned_cols=93  Identities=13%  Similarity=0.111  Sum_probs=54.1

Q ss_pred             HHHHHhhhhcCCceEEEEEecCCchhHHHHHHh-h-------ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEe
Q psy16770        249 VDAFLDNWREDNKVHALLFQRSLPVRLRYLINA-F-------KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFK  320 (554)
Q Consensus       249 ~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a-~-------~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk  320 (554)
                      +++.++.....+++++++|.....+....+... +       .+..++.+-.++.+......++..|++.+ +|+++++.
T Consensus         6 ~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~-~P~~~~i~   84 (114)
T cd02958           6 FEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDK-YPHIAIID   84 (114)
T ss_pred             HHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccC-CCeEEEEe
Confidence            344443333568888888876655433332221 1       22344555555655445567899999997 99999998


Q ss_pred             C-CCCCCCceeecCCCChhHHHhHH
Q psy16770        321 E-DKDRPSASITMNSIPVPTLQDIT  344 (554)
Q Consensus       321 ~-~~~~~~~~i~~~~~~~~~l~~fi  344 (554)
                      + +....  ....|..+.+.+..-+
T Consensus        85 ~~~g~~l--~~~~G~~~~~~f~~~L  107 (114)
T cd02958          85 PRTGEVL--KVWSGNITPEDLLSQL  107 (114)
T ss_pred             CccCcEe--EEEcCCCCHHHHHHHH
Confidence            7 33322  2345666666554443

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>KOG2603|consensus

Probab=82.85  E-value=9.9  Score=38.11  Aligned_cols=106  Identities=14%  Similarity=0.273  Sum_probs=65.0

Q ss_pred             CCccccCCcccHHHHHhhhhcCCceEEEEEecC-----------CchhHHHHHHhhc----cCC--ceEEEEEEccCCCC
Q psy16770        238 YKLIVPLSATNVDAFLDNWREDNKVHALLFQRS-----------LPVRLRYLINAFK----HRT--TIVFGVIVYDQEDS  300 (554)
Q Consensus       238 ~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~-----------~~~~~~~~~~a~~----~~~--~v~Fg~v~~~~~~~  300 (554)
                      +.-|...+++.+..|+..- ..|-..+++|+..           ...+....+.+..    ..+  ++-|+.||.+  +.
T Consensus        39 ~~~VI~~n~d~~~~~v~~~-prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~--e~  115 (331)
T KOG2603|consen   39 ESGVIRMNDDKFSKFVRPP-PRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYD--ES  115 (331)
T ss_pred             CCCeEEecCcchhhhccCC-CCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecc--cc
Confidence            3447788999999999742 2344556666421           1122222222221    122  6779999887  68


Q ss_pred             hhHHhHhCCCCCCceEEEEeCCCCCCCce----eecCCCChhHHHhHHhcC
Q psy16770        301 SSVFQRFKVPGDKDSLLIFKEDKDRPSAS----ITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       301 ~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~----i~~~~~~~~~l~~fi~~~  347 (554)
                      +++.+.++++. .|.+++|++....+...    .+.-....+.+.+|++.-
T Consensus       116 p~~Fq~l~ln~-~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~  165 (331)
T KOG2603|consen  116 PQVFQQLNLNN-VPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR  165 (331)
T ss_pred             HHHHHHhcccC-CCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence            99999999997 99999997744333211    112223466788888754

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=82.64  E-value=2.1  Score=40.39  Aligned_cols=40  Identities=23%  Similarity=0.368  Sum_probs=33.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCCh
Q psy16770         28 PRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDA   74 (554)
Q Consensus        28 ~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~   74 (554)
                      +++||.+||++|+.++..+|--|       ++.-.+|..||+.+.=.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~ILM~   40 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAILME   40 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHHHH
Confidence            57899999999999999999443       46778899999987544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=80.57  E-value=3.3  Score=37.53  Aligned_cols=44  Identities=23%  Similarity=0.498  Sum_probs=35.9

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN  190 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~  190 (554)
                      ++++++.|| .++++-|...+-.|.+...+++..|+.+.-|..+.
T Consensus        30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds   74 (157)
T COG1225          30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDS   74 (157)
T ss_pred             CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            447788888 57899999999999999999987787877776654

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=80.18  E-value=2.7  Score=35.41  Aligned_cols=76  Identities=16%  Similarity=0.242  Sum_probs=39.7

Q ss_pred             CCcccHHHHHhhhhcCCceEEEEEecCC-ch----hHHHHHHhh-ccCCceEEEEEEccC--CCChhHHhHhCCCCCCce
Q psy16770        244 LSATNVDAFLDNWREDNKVHALLFQRSL-PV----RLRYLINAF-KHRTTIVFGVIVYDQ--EDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       244 ~t~~~~~~fl~~~~~~~~~~v~~f~~~~-~~----~~~~~~~a~-~~~~~v~Fg~v~~~~--~~~~~l~~k~~i~~~~Pt  315 (554)
                      .|.++++++++.  +.+++ +++|.-.. -+    .+..+.... ...+.+.+++++.-.  .-+..++++|||...-|-
T Consensus         5 ~t~eql~~i~~~--S~~~~-~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ   81 (105)
T PF11009_consen    5 TTEEQLEEILEE--SKEKP-VLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ   81 (105)
T ss_dssp             -SHHHHHHHHHH-----SE-EEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred             CCHHHHHHHHHh--cccCc-EEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence            356889999875  23444 55563322 11    222222222 223349999998763  224568999999988999


Q ss_pred             EEEEeCC
Q psy16770        316 LLIFKED  322 (554)
Q Consensus       316 lvvfk~~  322 (554)
                      +++++++
T Consensus        82 ~ili~~g   88 (105)
T PF11009_consen   82 VILIKNG   88 (105)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999974

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	554
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		3e-19
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		4e-16
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		3e-15
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		1e-14
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		1e-14
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		3e-14
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		9e-14
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-13
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		1e-13
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		2e-13
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-13
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		7e-12
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		1e-11
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		6e-11
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		3e-10
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		4e-10
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		3e-09
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		4e-09
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		1e-08
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		2e-07
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		3e-06
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		3e-06
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		3e-06
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		6e-06
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		4e-05
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		5e-04
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		7e-04

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 53/70 (75%)
Query: 16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 75
          A+  DPY  LGV RTAS  +I+K YK+L  EWHPDKN DP A+++F+Q+++AY ILS+ E
Sbjct: 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEE 73
Query: 76 RRKQYDLFGT 85
          +R  YD +G+
Sbjct: 74 KRTNYDHYGS 83

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAER 76
          S D Y+ LGVPR AS +EI+K Y +L  ++HPD N +DP A+EKF QL EAY +LSD  +
Sbjct: 6  SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVK 65
Query: 77 RKQYDLFGT 85
          RKQYD +G+
Sbjct: 66 RKQYDAYGS 74

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 51/71 (71%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 81
          Y+ LGVP++AS ++I+K + +L +++HPDKN  P A+ KF ++ EAY  LSDA RRK+YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
Query: 82 LFGTTDGFSGQ 92
            G +   SG+
Sbjct: 70 TLGHSAFTSGK 80

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
          D Y+TLG+ R AS +EI++ Y+R  + +HPDKN +P A+EKF ++ EAY++LSD  +R+ 
Sbjct: 4  DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 80 YDLFGTTDGFSG 91
          +D +G  +G  G
Sbjct: 64 FDRYG-EEGLKG 74

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 49/68 (72%)
Query: 18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERR 77
          S D YE LGV R AS ++++K Y+RL +++HPDKN+ P A E F  +  AY +LS+ E+R
Sbjct: 6  SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKR 65
Query: 78 KQYDLFGT 85
          KQYD FG+
Sbjct: 66 KQYDQFGS 73

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAER 76
          +D YE L VPR AS + I+K Y++L ++WHPDKN  N   A+ +F Q+ EAY +LSDA++
Sbjct: 9  VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 77 RKQYDLFGT 85
          R  YD +G+
Sbjct: 69 RDIYDRYGS 77

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRK 78
          D YE LGV +TA  +EIRK YKRL +++HPD+N  D  A+ KF ++ EAY +L+D+++R 
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 79 QYDLFG 84
           YD +G
Sbjct: 64 AYDQYG 69

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRK 78
          D YE LGV +TA  +EIRK YKRL +++HPD+N  D  A+ KF ++ EAY +L+D+++R 
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 79 QYDLFG 84
           YD +G
Sbjct: 64 AYDQYG 69

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERRKQ 79
          YE L VPR+AS  +I+K Y+R  ++WHPDKN  N   A++KF ++ EAY +LSD  +R+ 
Sbjct: 5  YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64
Query: 80 YDLFGTTDGFSG 91
          YD +G  +G +G
Sbjct: 65 YDRYG-REGLTG 75

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 26/214 (12%)
Query: 22  YETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRKQY 80
           Y  LGV +TAS +EIR+ +K+L ++ HPDKN N+P A   FL++  AY +L D + RK+Y
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64
Query: 81  DLFGTT---DGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNF 137
           D +G     D   GQ   S +++ + +  +DD   E       E D ++    S   W  
Sbjct: 65  DKYGEKGLEDNQGGQ-YESWSYYRYDFGIYDDD-PEIITLERREFDAAVN---SGELW-- 117
Query: 138 EKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARR 197
                         + FYS  C  C  + P +++   E+  L +    V+  +++ L R 
Sbjct: 118 -------------FVNFYSPGCSHCHDLAPTWREFAKEVDGL-LRIGAVNCGDDRMLCRM 163
Query: 198 LGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEF 231
            GV S  P + +   G  +       S + +V F
Sbjct: 164 KGVNS-YPSLFIFRSGMAAVKYNGDRSKESLVAF 196

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRK 78
          D YE LGV +TA  +EIRK YKRL +++HPD+N  D  A+ KF ++ EAY +L+D+++R 
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 79 QYDLFG 84
           YD +G
Sbjct: 64 AYDQYG 69

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERRKQ 79
          YE LGV  +AS ++I+K Y++L + WHPDKN  N   A++KF  ++EAY +LSD+++R  
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 80 YDLFG 84
          YD  G
Sbjct: 72 YDRAG 76

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 22  YETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRKQY 80
           Y  LGV +TAS +EIR+ +K+L ++ HPDKN N+P A   FL++  AY +L D + RK+Y
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83
Query: 81  DLFGTT--DGFSGQDSASRNFHNHMYNPFDD 109
           D +G    +   G    S +++ + +  +DD
Sbjct: 84  DKYGEKGLEDNQGGQYESWSYYRYDFGIYDD 114

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 45/60 (75%), Gaps = 2/60 (3%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 81
          Y+ LGV   A+ +E++K Y++L +++HPDKN  P   EKF Q+++AY +LSDA++R+ YD
Sbjct: 9  YDVLGVKPNATQEELKKAYRKLALKYHPDKN--PNEGEKFKQISQAYEVLSDAKKRELYD 66

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 9   NVLFINCAVSL-DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEA 67
           N+ F + A+ L D Y  LGV  T  L+ I+  Y+RL  ++HPD + +  A+ KF  L EA
Sbjct: 17  NLYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEA 76
Query: 68  YNILSDAERRKQYDLF---GTTDGFSGQDSASRNFHNHMYNP--FDDVFSEGFN 116
           + +L D +RR +YD         GF  Q    R  H   Y+   FDD+FS  F 
Sbjct: 77  WEVLKDEQRRAEYDQLWQHRNDPGFGRQ----RQTHEQSYSQQDFDDIFSSMFG 126

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 22  YETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-PTAQEKFLQLTEAYNILSDAERRKQY 80
           Y  LG+ + A+  +I+K+Y++L +++HPDKN D P A +KF ++  A+ IL+DA +R  Y
Sbjct: 20  YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 81  DLFGTTDGFSGQDSASRNFHNH 102
           D +G+   +  +     N + +
Sbjct: 80  DKYGSLGLYVAEQFGEENVNTY 101

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 81
          Y+ LGV   AS  E++K Y+++ +++HPDKN  P   E+F Q+++AY +LSD ++R+ YD
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEKKRQIYD 68
Query: 82 LFG 84
            G
Sbjct: 69 QGG 71

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 41/62 (66%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
          D Y  +GV  T  L+ I+  Y+RL  ++HPD + +P A+ +F ++ EA+ +LSD +RR +
Sbjct: 6  DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 80 YD 81
          YD
Sbjct: 66 YD 67

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYD 81
          Y+ LGV  +A+ QE++K Y++  +++HPDK    T  EKF +++EA+ IL+D ++R+ YD
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT--EKFKEISEAFEILNDPQKREIYD 68
Query: 82 LFG 84
           +G
Sbjct: 69 QYG 71

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQY 80
          Y+ LGVP TA+  +I+  Y R    +HPD+N+    A E+F ++++AY +L  A  R++Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 81 D 81
          D
Sbjct: 80 D 80

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDK----NNDPTAQEKFLQLTEAYNILSDAE 75
           D Y+ LGV R A  QEI K Y++L ++WHPD          A++KF+ +  A  +LSD E
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 76  RRKQYD 81
            RK++D
Sbjct: 443 XRKKFD 448

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDK----NNDPTAQEKFLQLTEAYNILSDAE 75
           D Y+ LGV R A  QEI K Y++L ++WHPD          A++KF+ +  A  +LSD E
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 76  RRKQYD 81
            RK++D
Sbjct: 443 MRKKFD 448

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 43/70 (61%), Gaps = 7/70 (10%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT-------AQEKFLQLTEAYNILS 72
          D Y  LG   +A++ ++++ Y++L++ +HPDK +            +KF+++ +A+ IL 
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 73 DAERRKQYDL 82
          + E +K+YDL
Sbjct: 77 NEETKKKYDL 86

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 45/70 (64%), Gaps = 7/70 (10%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP----TAQE---KFLQLTEAYNILS 72
          D Y  LG   +A++ ++++ Y++L++ +HPDK +      T +E   KF+++ +A+ IL 
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 73 DAERRKQYDL 82
          + E +++YDL
Sbjct: 71 NEETKREYDL 80

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 135 WNFEKNYIPKSYT----TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190
           +NFEKN  P+ +      P ++ FY+DWC  C  V PI  +L  E     V  + V    
Sbjct: 24  YNFEKN--PEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIV-IYKVDTEK 80
Query: 191 EQGLARRLGVGSQLPQIALL-TDGRTSFFK--EPSFSVQKMVEFFRLK 235
           EQ LA   G+ S +P I  +  +G+    +   P  S +K ++ F LK
Sbjct: 81  EQELAGAFGIRS-IPSILFIPMEGKPEMAQGAMPKASFKKAIDEFLLK 127

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
          D Y  LG    +S+++I   +K   +E HPDK+  +P A E F +L +A  IL++ E R 
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 79 QYD 81
          +YD
Sbjct: 81 RYD 83

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 210
           +I F++ WC  C  + P+F+K+ D  +   VGF+ V V  +  +A+ +G+ + +P     
Sbjct: 37  VIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRA-MPTFVFF 95
Query: 211 TDGR 214
            +G+
Sbjct: 96  KNGQ 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	554
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-58
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-43
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-17
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-04
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	2e-31
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	9e-29
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	3e-28
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	2e-27
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	2e-27
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	3e-27
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	4e-27
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	6e-27
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	8e-27
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	1e-26
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	2e-26
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	2e-26
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	2e-26
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	4e-26
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	2e-24
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	4e-24
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	4e-24
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	3e-23
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	3e-23
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	4e-23
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	4e-23
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	3e-20
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	9e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-14
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	2e-12
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	3e-12
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
2guz_A	71	Mitochondrial import inner membrane translocase su	2e-10
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	3e-10
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	3e-10
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	3e-09
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	4e-09
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	5e-09
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	4e-08
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	7e-08
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	8e-08
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	7e-07
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	1e-06
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	2e-06
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	3e-06
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	7e-06
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	8e-06
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	1e-05
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	2e-05
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	4e-05
2l57_A	126	Uncharacterized protein; structural genomics, unkn	5e-05
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	8e-05
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	1e-04
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	1e-04
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	4e-04
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	5e-04
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	5e-04
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	6e-04
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	6e-04
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	6e-04
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	8e-04

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score =  192 bits (490), Expect = 2e-58
 Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 20/223 (8%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
           + Y  LGV +TAS +EIR+ +K+L ++ HPDKN N+P A   FL++  AY +L D + RK
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62

Query: 79  QYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFE 138
           +YD +G   G               Y  +   +   F    ++ +I    +         
Sbjct: 63  KYDKYG-EKGLEDN-------QGGQYESWSY-YRYDFGIYDDDPEIITLERREFDAAVNS 113

Query: 139 KNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL 198
                        + FYS  C  C  + P +++   E+  L +    V+  +++ L R  
Sbjct: 114 G--------ELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL-LRIGAVNCGDDRMLCRMK 164

Query: 199 GVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLI 241
           GV S  P + +   G  +       S + +V F    +   + 
Sbjct: 165 GVNS-YPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVT 206

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  165 bits (418), Expect = 1e-43
 Identities = 67/399 (16%), Positives = 131/399 (32%), Gaps = 28/399 (7%)

Query: 12  FINCAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNI 70
            I      + Y  LGV +TAS +EIR+ +K+L ++ HPDKN N+P A   FL++  AY +
Sbjct: 14  HIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEV 73

Query: 71  LSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKL 130
           L D + RK+YD +G       Q     ++  + Y+                   +  +  
Sbjct: 74  LKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNS- 132

Query: 131 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190
                                + FYS        + P +++   E+  L +    V+  +
Sbjct: 133 ----------------GELWFVNFYSPGSSHSHDLAPTWREFAKEVDGL-LRIGAVNCGD 175

Query: 191 EQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVD 250
           ++ L R  GV S  P + +   G  +       S + +V F    +    +  LS  N  
Sbjct: 176 DRMLCRMKGVNS-YPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVR-STVTELSTGNFV 233

Query: 251 AFLDNWREDNKVHALLF---QRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRF 307
             ++          + F             L  +      +  G +  D +   S+ +  
Sbjct: 234 NAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWV--DCDAQDSLCKSL 291

Query: 308 KVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPV 367
                  +        +    S  +    +   +   +    L    + S + L+     
Sbjct: 292 DTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAH 351

Query: 368 KKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFM 406
            +  V          +A+   L++     +  H  +   
Sbjct: 352 HRWLVFFHFGK--NENANDPELKKLKTLLKNEHIQVVRF 388

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 83.7 bits (206), Expect = 4e-17
 Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 23/285 (8%)

Query: 103 MYNPFDDVFSEGFNFPFEEHDISLF--HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCF 160
           ++        E  +     +DI  F    +++          P S   P L+ F++ W  
Sbjct: 409 VFKGQGTKEYEIHHGKKILYDILAFAKESVNSHVTTLGPQNFPASDKEPWLVDFFAPWSP 468

Query: 161 ACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKE 220
               + P  +K    L    +   T+     +GL     + +  P   +        ++ 
Sbjct: 469 PSRALLPELRKASTLLYG-QLKVGTLDCTIHEGLCNMYNIQA-YPTTVVFNQSSIHEYEG 526

Query: 221 PSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLF-------QRSLPV 273
              S ++++EF        ++  L+ +  +  +   + D       +       Q  +P 
Sbjct: 527 H-HSAEQILEFIEDLRNPSVVS-LTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPE 584

Query: 274 RLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRP---SASI 330
              +   A      I  G +  D     S   +  V      +  + +   +     +  
Sbjct: 585 ---WKRMARTLTGLINVGSV--DCGQYHSFCTQENVQR-YPEIRFYPQKSSKAYQYHSYN 638

Query: 331 TMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLF 375
             N              P  ++  ++ Q+  + V   K   VV F
Sbjct: 639 GWNRDAYSLRSWGLGFLPQASID-LTPQTFNEKVLQGKTHWVVDF 682

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 19/151 (12%), Positives = 48/151 (31%), Gaps = 21/151 (13%)

Query: 106 PFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKS---------------YTTPH 150
           P    + +  +  ++ H  + +++ + +  ++   ++P++                 T  
Sbjct: 619 PEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHW 678

Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 210
           ++ FY+ W        P F+ L   +    V    V         ++ G+ +  P + L 
Sbjct: 679 VVDFYAPWSGPSQNFAPEFELLARMIKG-KVRAGKVDCQAYPQTCQKAGIKA-YPSVKLY 736

Query: 211 TDGRTSFFK----EPSFSVQKMVEFFRLKLP 237
              R           S   + +      KL 
Sbjct: 737 QYERAKKSIWEEQINSRDAKTIAALIYGKLE 767

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  123 bits (310), Expect = 2e-31
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
           D Y  LGV  T  L+ I+  Y+RL  ++HPD + +  A+ KF  L EA+ +L D +RR +
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88

Query: 80  YDLFGTTDGFSGQDSASRNFHNHMYNP-FDDVFSEGF 115
           YD         G     +          FDD+FS  F
Sbjct: 89  YDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMF 125

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score =  108 bits (271), Expect = 9e-29
 Identities = 39/72 (54%), Positives = 53/72 (73%), Gaps = 1/72 (1%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
          DPY  LGV RTAS  +I+K YK+L  EWHPDKN DP A+++F+Q+++AY ILS+ E+R  
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTN 77

Query: 80 YDLFGTTDGFSG 91
          YD +G +   SG
Sbjct: 78 YDHYG-SGPSSG 88

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score =  106 bits (267), Expect = 3e-28
 Identities = 33/73 (45%), Positives = 52/73 (71%), Gaps = 1/73 (1%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
          D Y+TLG+ R AS +EI++ Y+R  + +HPDKN +P A+EKF ++ EAY++LSD  +R+ 
Sbjct: 4  DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63

Query: 80 YDLFGTTDGFSGQ 92
          +D +G  +G  G 
Sbjct: 64 FDRYG-EEGLKGS 75

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score =  105 bits (264), Expect = 2e-27
 Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 4/97 (4%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
           D YE LGV +TA  +EIRK YKRL +++HPD+N  D  A+ KF ++ EAY +L+D+++R 
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63

Query: 79  QYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGF 115
            YD +G    F         F       F D+F + F
Sbjct: 64  AYDQYG-HAAFEQGGMGGGGFGGGA--DFSDIFGDVF 97

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score =  104 bits (262), Expect = 2e-27
 Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 1/72 (1%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
          D YE LGV R AS ++++K Y+RL +++HPDKN+ P A E F  +  AY +LS+ E+RKQ
Sbjct: 8  DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67

Query: 80 YDLFGTTDGFSG 91
          YD FG +   SG
Sbjct: 68 YDQFG-SGPSSG 78

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score =  104 bits (262), Expect = 3e-27
 Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 10/105 (9%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 77
             YE L VPR+AS  +I+K Y+R  ++WHPDKN  N   A++KF ++ EAY +LSD  +R
Sbjct: 3   SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62

Query: 78  KQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEH 122
           + YD +G  +G +G  +           P       G       H
Sbjct: 63  EIYDRYG-REGLTGTGTGPSRAEAGSGGP-------GLEHHHHHH 99

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score =  104 bits (261), Expect = 4e-27
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 9/96 (9%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
             Y  LG+ + A+  +I+K+Y++L +++HPDKN ++P A +KF ++  A+ IL+DA +R 
Sbjct: 18  SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77

Query: 79  QYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEG 114
            YD +G + G    +              +  F  G
Sbjct: 78  IYDKYG-SLGLYVAEQFG-------EENVNTYFVSG 105

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score =  103 bits (258), Expect = 6e-27
 Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 2/73 (2%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
          D Y+ LGVPR AS +EI+K Y +L  ++HPD N +DP A+EKF QL EAY +LSD  +RK
Sbjct: 8  DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67

Query: 79 QYDLFGTTDGFSG 91
          QYD +G +   SG
Sbjct: 68 QYDAYG-SGPSSG 79

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score =  103 bits (258), Expect = 8e-27
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
            Y+ LGVP TA+  +I+  Y R    +HPD+N     A E+F ++++AY +L  A  R+
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77

Query: 79 QYDLFGTTDGFSGQDSASRNF 99
          +YD          +   S   
Sbjct: 78 KYDRGL-LSDEDLRGPGSGPS 97

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score =  103 bits (258), Expect = 1e-26
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
           D Y  LG    +S+++I   +K   +E HPDK+  +P A E F +L +A  IL++ E R 
Sbjct: 21  DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80

Query: 79  QYDLFG---TTDGFSGQDSASRNFHN 101
           +YD +     +  F   ++ + +   
Sbjct: 81  RYDHWRRSQMSMPFQQWEALNDSVKT 106

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score =  101 bits (255), Expect = 2e-26
 Identities = 32/65 (49%), Positives = 47/65 (72%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
            Y+ LGVP++AS ++I+K + +L +++HPDKN  P A+ KF ++ EAY  LSDA RRK+
Sbjct: 8  SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKE 67

Query: 80 YDLFG 84
          YD  G
Sbjct: 68 YDTLG 72

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score =  101 bits (254), Expect = 2e-26
 Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 3/74 (4%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 77
          D YE L VPR AS + I+K Y++L ++WHPDKN  N   A+ +F Q+ EAY +LSDA++R
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 69

Query: 78 KQYDLFGTTDGFSG 91
            YD +G +   SG
Sbjct: 70 DIYDRYG-SGPSSG 82

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  104 bits (260), Expect = 2e-26
 Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 13/108 (12%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT-------AQEKFLQLTEAYNILS 72
           D Y  LG   +A++ ++++ Y++L++ +HPDK +            +KF+++ +A+ IL 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70

Query: 73  DAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFE 120
           + E +++YDL    D                    +++     +  F 
Sbjct: 71  NEETKREYDLQRCEDDLRNVGPVDAQV------YLEEMSWNEGDHSFY 112

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score =  101 bits (253), Expect = 4e-26
 Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 3/79 (3%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 77
          + YE LGV  +AS ++I+K Y++L + WHPDKN  N   A++KF  ++EAY +LSD+++R
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69

Query: 78 KQYDLFGTTDGFSGQDSAS 96
            YD  G  D +     AS
Sbjct: 70 SLYDRAG-CDSWRAGGGAS 87

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 96.7 bits (241), Expect = 2e-24
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 8/79 (10%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-------PTAQEKFLQLTEAYNILS 72
          D Y  LG   +A++ ++++ Y++L++ +HPDK +            +KF+++ +A+ IL 
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

Query: 73 DAERRKQYDLFGTTDGFSG 91
          + E +K+YDL   +   SG
Sbjct: 77 NEETKKKYDLQR-SGPSSG 94

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 95.5 bits (238), Expect = 4e-24
 Identities = 25/65 (38%), Positives = 44/65 (67%), Gaps = 2/65 (3%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
            Y+ LGV  +A+ QE++K Y++  +++HPDK       EKF +++EA+ IL+D ++R+ 
Sbjct: 9  KLYDLLGVSPSANEQELKKGYRKAALKYHPDKP--TGDTEKFKEISEAFEILNDPQKREI 66

Query: 80 YDLFG 84
          YD +G
Sbjct: 67 YDQYG 71

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 95.0 bits (237), Expect = 4e-24
 Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 2/65 (3%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
            Y+ LGV   AS  E++K Y+++ +++HPDKN  P   E+F Q+++AY +LSD ++R+ 
Sbjct: 9  GYYDVLGVKPDASDNELKKAYRKMALKFHPDKN--PDGAEQFKQISQAYEVLSDEKKRQI 66

Query: 80 YDLFG 84
          YD  G
Sbjct: 67 YDQGG 71

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 92.9 bits (231), Expect = 3e-23
 Identities = 19/62 (30%), Positives = 29/62 (46%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
          D ++ LGV   AS  E+ K Y++L V  HPDK   P +++ F  +  A   L    +   
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87

Query: 80 YD 81
            
Sbjct: 88 SS 89

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 93.6 bits (233), Expect = 3e-23
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 7/96 (7%)

Query: 20  DPYETLGVPRTA-SLQEIRKNYKRLVVEWHPDKNNDP----TAQEKFLQLTEAYNILSDA 74
           + Y+ L V R     Q++ K Y+ L  + HPD+  +      A+E+F  +  AY  L D 
Sbjct: 16  NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75

Query: 75  ERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDV 110
           E +  YD +          +  + +      P  D+
Sbjct: 76  EAKTNYDYYL-DHPDQRFYNYYQYYRLRA-APKVDL 109

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 93.7 bits (233), Expect = 4e-23
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 7/108 (6%)

Query: 20  DPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERR 77
              + LG+ R+A  ++  +RK Y +   E+HPDK  D    EK  ++   Y  + D  + 
Sbjct: 9   QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKKMNTLYKKMEDGVKY 65

Query: 78  KQYDLFGTTDGFSGQDSASRNFHNHMYNPF--DDVFSEGFNFPFEEHD 123
                FG     +   +   +     +N F  +++F        ++  
Sbjct: 66  AHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEEMPSSDDEA 113

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 95.4 bits (237), Expect = 4e-23
 Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 21/148 (14%)

Query: 20  DPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERR 77
              + LG+ R+A  ++  +RK Y +   E+HPDK  D    EK  ++   Y  + D  + 
Sbjct: 12  QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKKMNTLYKKMEDGVKY 68

Query: 78  KQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFPFEEHDIS---LFHKLSTTH 134
                FG     +   ++S N         D ++ + +    ++   +   L   L   H
Sbjct: 69  AHQPDFGGFWDATEVFASSLNPG------VDAIYCKQWPECVKKMSTNCICLLCLLRMKH 122

Query: 135 WNFEKNYIPKSYTTPHLILFYSDWCFAC 162
            N       K Y    L+     +CF C
Sbjct: 123 EN------RKLYRKDPLVWVDC-YCFDC 143

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 84.4 bits (209), Expect = 3e-20
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN--NDPTAQEKFLQLTEAYNILSDAERR 77
          +    +         E +K  +RL ++WHPDKN  N   A E F  L    N L   E++
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQ 73

Query: 78 KQYDLFGTTDGFSGQ 92
             D           
Sbjct: 74 AFLDQNA-DRASRRT 87

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 71.5 bits (175), Expect = 9e-16
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 5/72 (6%)

Query: 18 SLDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 75
               E L +PR        +++ YK+  +  HPDK           +L   +       
Sbjct: 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH---ALMQELNSLWGTFKTEV 66

Query: 76 RRKQYDLFGTTD 87
             + +L GT  
Sbjct: 67 YNLRMNLGGTGF 78

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 4/66 (6%)

Query: 20  DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT----AQEKFLQLTEAYNILSDAE 75
           D Y+ LGV R A  QEI K Y++L ++WHPD   +      A++KF+ +  A  +LSD E
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442

Query: 76  RRKQYD 81
            RK++D
Sbjct: 443 MRKKFD 448

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 64.2 bits (156), Expect = 3e-12
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 19 LDPYETLGVPRTASL--QEIRKNYKRLVVEWHPDKNNDPTAQEK------FLQLTEAYNI 70
          +D +   G+P    L  Q +   ++ L  ++HPDK    +  E+         + +A+  
Sbjct: 1  MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 71 LSDAERRKQYDL 82
          L     R +Y L
Sbjct: 61 LRHPLMRAEYLL 72

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 61.8 bits (149), Expect = 3e-11
 Identities = 13/63 (20%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 22  YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT----AQEKFLQLTEAYNILSDAERR 77
           ++ +G+    + ++++K Y++ V+  HPDK         A+  F++L +A++   +  ++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 179

Query: 78  KQY 80
             Y
Sbjct: 180 PLY 182

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 1e-10
 Identities = 84/589 (14%), Positives = 159/589 (26%), Gaps = 190/589 (32%)

Query: 36  IRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSGQDSA 95
           +R NYK L+      +   P+        T  Y      +R +   L+     F+ + + 
Sbjct: 87  LRINYKFLMSPIK-TEQRQPSMM------TRMYI----EQRDR---LYNDNQVFA-KYNV 131

Query: 96  SR-----NFHNHMYN--PFDDVFSEGF--------------------NFPFEEHDISLFH 128
           SR          +    P  +V  +G                        F+        
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-------- 183

Query: 129 KLSTTHW-NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVH 187
                 W N +    P++       L          Q++P +    D  S +      + 
Sbjct: 184 ----IFWLNLKNCNSPETVLEMLQKL--------LYQIDPNWTSRSDHSSNI-----KLR 226

Query: 188 VHNEQGLARRLGVGSQLPQIALLT-----DGRTSFFKEPSFSVQ---------KMVEFFR 233
           +H+ Q   RRL          LL      + +   +   +F++          K V  F 
Sbjct: 227 IHSIQAELRRLLKSKPYEN-CLLVLLNVQNAKA--WN--AFNLSCKILLTTRFKQVTDFL 281

Query: 234 LKLPYKLIV------PLSATNVDAFLDNW---------REDNKVHALL------FQRSLP 272
                  I        L+   V + L  +         RE    +           R   
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 273 VRLRYL--INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASI 330
                   +N  K  T I       +  + +   + F        L +F           
Sbjct: 342 ATWDNWKHVNCDKLTTII---ESSLNVLEPAEYRKMFD------RLSVFPPSAH------ 386

Query: 331 TMNSIPVPTLQ----DITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASR 386
               IP   L     D+  ++  + + ++   S+++              +   E   S 
Sbjct: 387 ----IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE--------------KQPKESTISI 428

Query: 387 HTL----RRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIA-------- 434
            ++    +   +    +H +I   Y   +      + L  P        HI         
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDS--DDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 435 ----AMWRMDY-------KKIKY---GW-LLGDAVDDWKDYNTTKDRLDAGLRSLVNDP- 478
                ++RM +       +KI++    W   G  ++  +     K  +        NDP 
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI------CDNDPK 540

Query: 479 YNNLLYD--TALKEISDEYIQSLGVRIFNRIFMH-----IEMAQQSLSR 520
           Y  L+      L +I +  I S    +     M       E A + + R
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 77/503 (15%), Positives = 154/503 (30%), Gaps = 114/503 (22%)

Query: 100 HNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWC 159
           H + Y     VF + F   F+  D+    K   +    +   + K   +  L LF   W 
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF---WT 70

Query: 160 FACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFK 219
               + E + +K ++E+  +   F    +  EQ     +     + Q   L +    F K
Sbjct: 71  L-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 220 EPSFSV--QKMVEFFRLKL----PYKLIV---------------PLSATNVDAFLDN--- 255
              ++V   +     R  L    P K ++                  +  V   +D    
Sbjct: 129 ---YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 256 W---REDNKVHALL-FQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQR-FKVP 310
           W   +  N    +L   + L  ++     +    ++     I        +  +R  K  
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS----NIKLRIHSIQAELRRLLKSK 241

Query: 311 GDKDSLLIFKEDKDRPSASITMNSIPVPTL-----QDITDNNPYLTLPRISSQSMLDAVC 365
             ++ LL+    ++  + +    ++    L     + +TD     T   IS       + 
Sbjct: 242 PYENCLLVLLNVQN--AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 366 PVKKLCVVLFS-------EDSPEHDASRHTLRRFAQESRFVHNNIA----FMYVFIEKQP 414
           P +     L         +D P  +      RR +  +  + + +A    + +V  +K  
Sbjct: 300 PDEVK--SLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 415 E----FVNALTSPE------------DSSEISLH-IAAMWR-MDY--------KKIKYGW 448
                 +N L   E             S+ I    ++ +W  +          K  KY  
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 449 LLGDAVDDWKDYNTT----------KDRLDAGL-RSLVNDPYN---NLLYDTALKEISDE 494
           +        K+   +          K   +  L RS+V D YN       D  +    D+
Sbjct: 417 VEK----QPKESTISIPSIYLELKVKLENEYALHRSIV-DHYNIPKTFDSDDLIPPYLDQ 471

Query: 495 YIQSLGVRIFNRIFMHIEMAQQS 517
           Y        ++ I  H++  +  
Sbjct: 472 Y-------FYSHIGHHLKNIEHP 487

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 61/423 (14%), Positives = 109/423 (25%), Gaps = 185/423 (43%)

Query: 11  LFINCAVSLDPYETLGV-PRTASL--QEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEA 67
            +++C     P E L   PR  S+  + IR         W   K+ +       ++ +  
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT----WDNWKHVNCDKLTTIIESS-- 362

Query: 68  YNILSDAERRKQYDLFGTTDGFSGQDSASRNFHNHMYNPFDDVFSEGFNFP--------- 118
            N+L  AE RK +D                            VF    + P         
Sbjct: 363 LNVLEPAEYRKMFDRLS-------------------------VFPPSAHIPTILLSLIWF 397

Query: 119 -----FEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLM 173
                     ++  HK S      EK     + + P + L                 KL 
Sbjct: 398 DVIKSDVMVVVNKLHKYSL----VEKQPKESTISIPSIYLELK-------------VKLE 440

Query: 174 DELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFR 233
           +E        + +H                                      + +V+ + 
Sbjct: 441 NE--------YALH--------------------------------------RSIVDHYN 454

Query: 234 LKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVI 293
           +   +           D  +  +  D                 Y    + H        I
Sbjct: 455 IPKTFDS---------DDLIPPY-LDQ----------------YF---YSH--------I 477

Query: 294 VY-----DQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPV-PTLQD----- 342
            +     +  +  ++F+   +  D      F E K R  ++    S  +  TLQ      
Sbjct: 478 GHHLKNIEHPERMTLFRMVFL--D----FRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 343 --ITDNNPYLT---------LPRISSQSMLDAVCPVKKLCVV---LFSEDSPEH-DASRH 387
             I DN+P            LP+I    +       K   ++   L +ED     +A + 
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICS-----KYTDLLRIALMAEDEAIFEEAHKQ 586

Query: 388 TLR 390
             R
Sbjct: 587 VQR 589

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 22 YETLGV-PRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRK 78
           + L +   T + +++++ ++++++  HPDK   P    K   + EA + L      K
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATK---INEAKDFLEKRGISK 71

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 61.8 bits (149), Expect = 3e-10
 Identities = 41/363 (11%), Positives = 91/363 (25%), Gaps = 28/363 (7%)

Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL 210
           L  F++ WC  C  + P + K  + L    +    +     Q L     +    P + + 
Sbjct: 35  LAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNI-PGFPSLKIF 93

Query: 211 TDGRTSFFKEPSF--SVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQ 268
            +   +   +     + + +V+F   +    + V        A      E      ++  
Sbjct: 94  KNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLAN-----ETFVTPVIVQS 148

Query: 269 RSLPVRLR--YLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRP 326
             +       +   A KH     F       +D            +       K D    
Sbjct: 149 GKIDADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIA-- 206

Query: 327 SASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASR 386
                         +             I                  LF  D  E +  +
Sbjct: 207 ---------DADVFEKWLQVEALPYFGEIDGSV-FAQYVESGLPLGYLFYNDEEELEEYK 256

Query: 387 HTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKY 446
                 A+++R     + F+ +   K       L   E     ++H       D K    
Sbjct: 257 PLFTELAKKNR---GLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHD---MTEDLKYGLP 310

Query: 447 GWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNR 506
                   +           +++ ++  +    + ++    + E  D  +  L  +  + 
Sbjct: 311 QLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDE 370

Query: 507 IFM 509
           I  
Sbjct: 371 IVN 373

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 59.0 bits (142), Expect = 3e-10
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 8/73 (10%)

Query: 18  SLDPYETLGVPRT--ASLQEIRKNYKRLVVEWHPDKNNDPTAQEK------FLQLTEAYN 69
           + D +  +   R+      +++  Y++L    HPD  +  +  EK         + +AY 
Sbjct: 42  TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYK 101

Query: 70  ILSDAERRKQYDL 82
            L     R  Y L
Sbjct: 102 TLLAPLSRGLYLL 114

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 58.7 bits (141), Expect = 3e-09
 Identities = 36/268 (13%), Positives = 76/268 (28%), Gaps = 18/268 (6%)

Query: 133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ 192
           T  NFE            L+ F++ WC    ++ P ++     L    V    V      
Sbjct: 7   TDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG-IVPLAKVDCTANT 65

Query: 193 GLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAF 252
               + GV S  P + +  DG  +   +   +   +V   + +     +   +      F
Sbjct: 66  NTCNKYGV-SGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKF 124

Query: 253 LDNWREDNKVHALLFQRSL--PVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVP 310
           +     D     + F           +L  A   R    F        +  S+   +   
Sbjct: 125 I----SDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHT-----NVESLVNEYDDN 175

Query: 311 GDKDSLL---IFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPV 367
           G+   L          +  + + T   +    ++     N +   P ++  +        
Sbjct: 176 GEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQG-- 233

Query: 368 KKLCVVLFSEDSPEHDASRHTLRRFAQE 395
           K L +  +  D  ++    +  R     
Sbjct: 234 KDLLIAYYDVDYEKNAKGSNYWRNRVMM 261

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 57.4 bits (138), Expect = 4e-09
 Identities = 50/318 (15%), Positives = 103/318 (32%), Gaps = 21/318 (6%)

Query: 138 EKNYIPKSYTTPHLILFYSDWCFACLQVEPIF-------KKLMDELSPLGVGFFTVHVHN 190
           EKN+         L L+Y +   +    +  F       + +   L    +GF  V    
Sbjct: 18  EKNFKQVLKKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK 77

Query: 191 EQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVD 250
           E  LA++LG   +   + +L   RT  F    F+   +VEF    +   + +  S   V 
Sbjct: 78  EAKLAKKLGFDEE-GSLYVLKGDRTIEFDGE-FAADVLVEFLLDLIEDPVEIINSKLEVQ 135

Query: 251 AFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVP 310
           AF     +  K+              +   A   +  I F            V ++  + 
Sbjct: 136 AFERI-EDQIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFFATF-----DKGVAKKLSLK 189

Query: 311 GDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVC-PVKK 369
            ++   + F E       +I         L +    +   TL R+  + M +     +  
Sbjct: 190 MNE---VDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNG 246

Query: 370 LCVVLF-SEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSE 428
           + +V F     P+       L++ A+++   + +++ +++  +  P  V           
Sbjct: 247 IHIVAFAERSDPDGYEFLEILKQVARDNTD-NPDLSIVWIDPDDFPLLVAYWEKTFKIDL 305

Query: 429 ISLHIAAMWRMDYKKIKY 446
               I  +   D   +  
Sbjct: 306 FKPQIGVVNVTDADSVWM 323

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 55.0 bits (132), Expect = 5e-09
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 9/80 (11%)

Query: 12 FINCAVSLDPYETLGVPR-------TASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQL 64
           +    +   YE             T     +RK Y++L  + HPD        E+   L
Sbjct: 4  LVQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMA--QQGSEQSSTL 61

Query: 65 TEAYNILSDAERRKQYDLFG 84
           +AY+ L D  RR QY L  
Sbjct: 62 NQAYHTLKDPLRRSQYMLKL 81

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 54.2 bits (130), Expect = 4e-08
 Identities = 45/304 (14%), Positives = 105/304 (34%), Gaps = 20/304 (6%)

Query: 151 LILFYSDWCFACLQV------EPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQL 204
            +L++                E I +     L   GVGF  V    +  +A++LG+ ++ 
Sbjct: 34  ALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL-TEE 92

Query: 205 PQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHA 264
             I +  +     +    FS   +VEF    L   + +      + AF +   ++ K+  
Sbjct: 93  DSIYVFKEDEVIEYDGE-FSADTLVEFLLDVLEDPVELIEGERELQAFENI-EDEIKLIG 150

Query: 265 LLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKD 324
               +       +   A +    I F          S V ++  +    + +  ++   +
Sbjct: 151 YFKNKDSEHYKAFKEAAEEFHPYIPFFATF-----DSKVAKKLTL--KLNEIDFYEAFME 203

Query: 325 RPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVC-PVKKLCVVLF-SEDSPEH 382
            P  +I         + +  + +   TL ++  +SM +     +  + +V F  E  P+ 
Sbjct: 204 EP-VTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDG 262

Query: 383 DASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYK 442
                 L+  AQ++   + +++ +++  +  P  V       D    +  I  +   D  
Sbjct: 263 YEFLEILKSVAQDNT-DNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDAD 321

Query: 443 KIKY 446
            +  
Sbjct: 322 SVWM 325

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 53.3 bits (128), Expect = 7e-08
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 9/82 (10%)

Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFT---VHVHNEQ 192
           N ++  + +S TTP L  F+S+    CLQ+ PI + L  + +    G F    +    EQ
Sbjct: 16  NLQQ-VLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYN----GQFILAKLDCDAEQ 70

Query: 193 GLARRLGVGSQLPQIALLTDGR 214
            +A + G+ + +P + L  +G+
Sbjct: 71  MIAAQFGLRA-IPTVYLFQNGQ 91

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 53.4 bits (128), Expect = 8e-08
 Identities = 36/282 (12%), Positives = 84/282 (29%), Gaps = 22/282 (7%)

Query: 151 LILFYSDWCFACLQVEPIFKKLMDEL-----SPLGVGFFTVHVHNEQGLARRLGVGSQLP 205
           L+ FY+DWC     + PIF++  D +     +   V F  V       +A+R  + S+ P
Sbjct: 26  LVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRI-SKYP 84

Query: 206 QIALLTDGRTSFFK-EPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHA 264
            + L  +G     +     SV+ + ++ R +    +        +           +   
Sbjct: 85  TLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLD----RSKRNII 140

Query: 265 LLFQRSL-PVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDK 323
             F++        +   A        F     D      V +  +  G  D+++      
Sbjct: 141 GYFEQKDSDNYRVFERVANILHDDCAFLSAFGD------VSKPERYSG--DNIIYKPPGH 192

Query: 324 DRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHD 383
             P               +   +     +  I+ ++  +         ++   ++  E  
Sbjct: 193 SAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTES- 251

Query: 384 ASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPED 425
                    A++       I F++   +K    +  +     
Sbjct: 252 -LEIFQNEVARQLISEKGTINFLHADCDKFRHPLLHIQKTPA 292

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 49.5 bits (118), Expect = 7e-07
 Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 25/189 (13%)

Query: 151 LILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHNEQGLARRLGVGSQLPQIA 208
           L+ FY+ WC  C Q  P ++K+ + L      +    +   +   LA R  V    P I 
Sbjct: 36  LLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSG-YPTIK 94

Query: 209 LLTDGRTSFFKEPSFSVQKMVEFFR------LKLPYKLIVPLSATNVDAFLDNWREDNKV 262
           +L  G+   ++    + +++V   R         P ++ + L+  N D  +     D  +
Sbjct: 95  ILKKGQAVDYEGS-RTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVV----NDADI 149

Query: 263 HALLF--------QRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD 314
             + F        ++  P   +      K    I    +  D    + + +RF V G   
Sbjct: 150 ILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKV--DATAETDLAKRFDVSGY-P 206

Query: 315 SLLIFKEDK 323
           +L IF++ +
Sbjct: 207 TLKIFRKGR 215

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 11/56 (19%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 22 YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT----AQEKFLQLTEAYNILSD 73
          ++ +G+    + ++++K Y++ V+  HP K         A+  F++L +A++   +
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
             ++  + +      ++ F+++W   C    PI+  L  + +  G+ F  V V     ++
Sbjct: 16  TIDEE-LERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVS 74

Query: 196 RRLGVGS-----QLPQIALLTDGR 214
            R  V +     QLP + L   G+
Sbjct: 75  TRYKVSTSPLTKQLPTLILFQGGK 98

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 6/97 (6%)

Query: 123 DISLFHKLSTTHW-----NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS 177
             +L+ +L T  W     +   ++I +      L+               +  +L+ E  
Sbjct: 7   FSALWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFP 66

Query: 178 PLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGR 214
                     +   + +  R  V    P   + TDG+
Sbjct: 67  QFDWQVAVADLEQSEAIGDRFNVRR-FPATLVFTDGK 102

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 44.2 bits (104), Expect = 7e-06
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 8/59 (13%)

Query: 22  YETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP--------TAQEKFLQLTEAYNILS 72
           ++ + +        +RK+Y+R ++  HPDK             A++ F  L EA++  +
Sbjct: 43  WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFN 101

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 46.5 bits (110), Expect = 8e-06
 Identities = 29/210 (13%), Positives = 64/210 (30%), Gaps = 29/210 (13%)

Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL----SPLGVGFF--TVHVH 189
                 +  S  +   + F++ WC  C+   P +  L +++      L +         +
Sbjct: 21  TVRG-AVLGS-RSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETN 78

Query: 190 NEQGLARRLGVGSQLPQI----ALLTDGRTSFFKEPSFSVQKMVEFFRLKLP-------- 237
           +   + R   +    P +    A   +G  + F      VQ + E     L         
Sbjct: 79  SA--VCRDFNI-PGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWPP 135

Query: 238 -YKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYD 296
               + P     +D F      + +  AL+F+       R +         +    ++  
Sbjct: 136 ACPPLEPAXLEEIDGFFARN--NEEYLALIFEXGGSYLAREVALDLSQHKGVAVRRVL-- 191

Query: 297 QEDSSSVFQRFKVPGDKDSLLIFKEDKDRP 326
               ++V ++F V       L+F+      
Sbjct: 192 -NTEANVVRKFGVTDFPSCYLLFRNGSVSR 220

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208
             +I FY+ WC AC  ++P ++   +    L V    V V  + GL+ R  + + LP I 
Sbjct: 24  DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINA-LPTIY 82

Query: 209 LLTDG 213
              DG
Sbjct: 83  HCKDG 87

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 131 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190
           +      E         +  ++ F+ + C  C  +E +  K         V   +V    
Sbjct: 3   AIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEA 60

Query: 191 EQGLARRLGVGSQLPQIALLTDG 213
              L + LG    +P +  + DG
Sbjct: 61  RPELMKELGFER-VPTLVFIRDG 82

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208
             L+   ++ C  C  +      +++  +   V    + + + Q +A R  V +  P + 
Sbjct: 20  LVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILLQDMQEIAGRYAVFT-GPTVL 76

Query: 209 LLTDGR 214
           L  +G+
Sbjct: 77  LFYNGK 82

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-LGVGFFTVH 187
           +++    N  +N        P +I+F +D C  C++++     +  E      + +  + 
Sbjct: 8   QINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLE 67

Query: 188 VHNEQGLARRLGVGSQLPQIALL 210
                 LA +      +P    L
Sbjct: 68  EEKNIDLAYKYDANI-VPTTVFL 89

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
              +  +  +     ++ F + WC  C  ++P F  L ++ S   V F  V V + Q +A
Sbjct: 9   TAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVDDCQDVA 66

Query: 196 RRLGVGS 202
               V S
Sbjct: 67  SESEVKS 73

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
              +  +  +     ++ F + WC     ++P F  L ++ S   V F  V V + Q +A
Sbjct: 20  TAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS--NVIFLEVDVDDCQDVA 77

Query: 196 RRLGVGS 202
               V S
Sbjct: 78  SECEVKS 84

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 8/72 (11%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 131 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN 190
               + +             ++ F++ W   C  ++ +F+ + +E S   V F ++    
Sbjct: 7   DQEQFTYLTTTAAGD--KLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE 64

Query: 191 EQGLARRLGVGS 202
              ++    + +
Sbjct: 65  NSEISELFEISA 76

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 139 KNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL 198
           +  +  + +   ++ F    C  CL++ P F  + ++       F  V VH  QG A   
Sbjct: 13  QPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQCQGTAATN 70

Query: 199 GVGS 202
            + +
Sbjct: 71  NISA 74

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
           + EK  I ++     ++ F++ WC  C  + P  + L  E+    V F  V V   +  A
Sbjct: 9   DLEK-LINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQNEEAA 65

Query: 196 RRLGVGS 202
            +  V +
Sbjct: 66  AKYSVTA 72

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 154 FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGS 202
           F + WC    Q+ P + +L +      + F  + V      +    + +
Sbjct: 53  FSARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDELSDFSASWEIKA 99

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 41/230 (17%)

Query: 133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL-SPLGVGFFTVHVHNE 191
           T  +F+K     +YT+  L+ FY+ WC  C ++   F+K    L   + V      ++  
Sbjct: 23  TPKSFDKAIHNTNYTS--LVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKN 80

Query: 192 QGLARRLGVGSQLPQIALLTDGRTSFFKEPSF-----------------SVQKMVEFFRL 234
           + L  +  V    P + +    +    K                     ++  +V+F   
Sbjct: 81  KALCAKYDVNG-FPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLS 139

Query: 235 KLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIV 294
           ++   +   +    + + L    +  K+  +LF +   +   Y   A        F  I 
Sbjct: 140 RIRSYVKKFVRIDTLGSLLR---KSPKLSVVLFSKQDKISPVYKSIALDWLGKFDFYSIS 196

Query: 295 YDQ-----------EDSSSVFQRF------KVPGDKDSLLIFKEDKDRPS 327
             +           E +  +F+        +   DK  L++F  DKD+  
Sbjct: 197 NKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFW 246

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 6/81 (7%)

Query: 136 NFEKNYIPKSYTTPHLIL--FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG 193
            F+  ++     T  L++  F + WC  C  + P+F +   +    G  F  V V   + 
Sbjct: 16  EFDT-HMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDELKD 72

Query: 194 LARRLGVGSQLPQIALLTDGR 214
           +A    V + +P    + DG 
Sbjct: 73  VAEAYNVEA-MPTFLFIKDGE 92

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-QGL 194
            F    +  +   P ++  ++ WC     + P ++KL +E     V F  +  + E + L
Sbjct: 14  TFW-PIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTL 70

Query: 195 ARRLGVGSQLPQIALLTDG 213
           A+ LG+   +P   +L + 
Sbjct: 71  AKELGIRV-VPTFKILKEN 88

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 150 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIAL 209
           ++ +F S  C  C     +  +   E     +    + +  ++  A   G+ + +P IA+
Sbjct: 4   NIEVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVDREKAIEYGLMA-VPAIAI 61

Query: 210 LTDGRTSF 217
             +G   F
Sbjct: 62  --NGVVRF 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	554
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	100.0
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	100.0
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	100.0
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	100.0
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	100.0
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	100.0
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.95
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.94
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.92
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.9
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.86
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.83
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.83
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.82
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.82
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.8
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.8
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.8
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.79
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.78
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.78
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.78
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.78
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.77
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.77
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.76
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.76
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.75
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.75
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.75
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.75
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.74
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.74
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.74
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.73
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.73
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.73
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.73
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.73
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.72
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.72
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.71
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.71
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.71
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.7
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.7
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.7
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.7
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.7
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.7
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.7
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.7
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.7
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.7
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.69
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.69
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.69
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.69
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.69
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.69
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.68
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.68
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.68
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.68
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.68
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.68
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.68
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.68
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.68
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.68
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.68
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.68
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.67
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.67
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.67
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.66
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.66
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.66
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.66
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.65
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.65
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.65
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.65
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.65
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.65
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.65
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.65
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.65
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.65
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.64
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.64
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.64
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.64
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.64
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.63
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.63
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.63
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.63
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.62
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.62
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.62
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.62
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.62
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.62
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.62
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.61
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.61
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.61
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.61
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.6
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.6
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.59
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.59
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.59
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.37
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.58
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.57
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.57
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.57
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.57
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.57
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.56
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.56
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.55
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.55
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.55
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.55
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.53
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.52
2guz_A	71	Mitochondrial import inner membrane translocase su	99.51
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.51
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.5
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.5
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.5
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.48
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.47
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.46
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.45
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.44
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.44
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.41
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.41
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.39
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.38
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.37
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.37
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.35
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.03
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.34
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.33
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.3
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.3
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.29
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.29
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.26
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.25
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.25
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.25
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.24
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.23
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.23
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.23
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.21
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.2
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.2
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.19
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.16
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.16
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.15
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.15
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.15
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.14
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.14
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.13
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.12
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.11
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.1
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.08
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.08
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.06
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.06
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.05
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.05
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.04
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.04
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.04
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.03
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.03
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	99.03
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.01
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.0
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	98.98
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.97
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.97
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.96
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	98.96
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.96
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.95
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.93
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.92
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.91
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.91
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.91
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.85
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.85
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.3
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.81
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.8
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.79
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.26
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.77
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.74
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.74
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.74
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.73
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.72
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.7
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.7
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.69
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.69
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	98.69
2guz_B	65	Mitochondrial import inner membrane translocase su	98.69
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.68
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.68
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.66
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.64
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.64
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.63
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.63
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.63
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.61
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.56
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.52
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.5
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.5
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.48
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.47
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.44
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.43
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.42
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.39
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.39
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.33
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.32
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.32
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	98.32
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.31
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.29
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.28
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.26
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.23
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.22
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.17
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.17
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.16
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.11
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.08
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.07
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.06
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.02
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.0
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	97.99
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	97.96
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	97.93
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	97.91
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.9
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.89
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	97.89
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	97.89
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	97.87
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	97.87
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	97.86
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	97.86
3me7_A	170	Putative uncharacterized protein; electron transfe	97.82
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	97.79
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.78
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	97.76
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	97.75
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	97.73
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	97.69
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.69
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	97.67
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	97.67
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	97.67
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.66
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	97.65
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	97.64
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	97.61
2qsi_A	137	Putative hydrogenase expression/formation protein;	97.61
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	97.6
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	97.6
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.6
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	97.56
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	97.55
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	97.51
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	97.51
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	97.5
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.5
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	97.49
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.41
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.41
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	97.39
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	97.37
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	97.36
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	97.36
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	97.34
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	97.33
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	97.31
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	97.3
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	97.29
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	97.28
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	97.28
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	97.26
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	97.26
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	97.24
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	97.24
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	97.23
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	97.23
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	97.23
1mek_A	120	Protein disulfide isomerase; electron transport, r	97.2
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	97.19
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	97.19
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	97.19
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	97.18
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	97.18
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	97.16
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	97.16
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	97.15
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	97.12
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	97.09
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	97.09
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	97.09
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	97.08
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	97.07
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	97.06
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	97.04
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	97.04
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	97.03
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	97.01
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	97.01
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	97.01
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	97.01
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	96.97
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	96.95
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	96.94
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	96.93
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	96.91
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	96.9
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	96.87
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	96.86
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	96.86
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	96.86
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	96.85
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	96.84
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	96.82
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	96.82
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	96.79
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	96.78
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	96.73
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	96.73
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.72
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	96.72
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	96.7
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	96.7
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	96.7
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	96.65
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	96.59
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	96.57
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	96.56
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	96.55
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	96.48
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	96.48
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	96.47
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	96.43
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	96.41
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	96.4
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	96.32
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	96.31
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	96.31
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	96.23
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	96.2
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	96.19
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	96.17
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	96.16
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	96.09
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	96.05
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	95.97
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	95.95
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	95.95
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	95.9
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	95.76
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	95.64
2kuc_A	130	Putative disulphide-isomerase; structural genomics	95.51
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	95.49
2l57_A	126	Uncharacterized protein; structural genomics, unkn	95.45
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	95.23
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	95.22
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	95.19
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	95.18
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	95.13
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	95.08
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	94.04
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	94.96
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	94.92
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	94.76
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	94.65
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	94.58
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	94.49
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	94.43
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	94.4
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	94.26
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	94.21
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	94.18
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	93.74
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	93.68
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	93.38
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	93.11
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	92.7
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	92.48
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	92.32
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	92.31
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	91.87
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	91.6
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	91.55
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	90.43
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	90.4
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	89.96
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	89.95
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	89.94
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	89.53
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	88.58
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	88.53
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	88.45
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	87.83
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	87.53
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	87.52
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	87.13
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	86.4
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	85.49
3raz_A	151	Thioredoxin-related protein; structural genomics,	85.47
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	85.28
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	85.05
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	85.05
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	84.89
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	84.68
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	83.98
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	83.43
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	81.94
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	81.49
4evm_A	138	Thioredoxin family protein; structural genomics, n	81.06
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	80.98
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	80.68
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	80.16
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	80.09
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	80.04

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=1.3e-47  Score=437.39  Aligned_cols=413  Identities=19%  Similarity=0.251  Sum_probs=265.4

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCCCCCCCC
Q psy16770         15 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSGQD   93 (554)
Q Consensus        15 ~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~~   93 (554)
                      .....|||++|||+++|+.++||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||++|..+..... 
T Consensus        17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~~-   95 (780)
T 3apo_A           17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQ-   95 (780)
T ss_dssp             ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC----------
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccCC-
Confidence            345689999999999999999999999999999999995 577899999999999999999999999999987632221 


Q ss_pred             CccccccCCCCCCCCccccCCCCCCccccccccccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHH
Q psy16770         94 SASRNFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLM  173 (554)
Q Consensus        94 ~~~~~~~~~~~~~f~~~f~~~~~f~f~~~~~~~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a  173 (554)
                        +.++  ..|+.|...|+.        ++ ....+++||.++|++.|   .++++++|+||||||++|+++.|.|++++
T Consensus        96 --~~~~--~~~~~~~~~fg~--------~~-~~~~v~~l~~~~f~~~i---~~~~~~lv~Fya~wC~~C~~~~p~~~~~a  159 (780)
T 3apo_A           96 --GGQY--ESWSYYRYDFGI--------YD-DDPEIITLERREFDAAV---NSGELWFVNFYSPGSSHSHDLAPTWREFA  159 (780)
T ss_dssp             ------------CCSSSSST--------TT-TCTTEEECCHHHHHHHH---TSSSCEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             --CCCc--ccccccchhhcc--------cC-CCcceeeechHhHHhhh---cCCCcEEEEEeCCCCcchhHhhHHHHHHH
Confidence              1111  122222222221        11 12358899999999999   56889999999999999999999999999


Q ss_pred             HHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHhCCCCccccCCcc----cH
Q psy16770        174 DELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSAT----NV  249 (554)
Q Consensus       174 ~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~----~~  249 (554)
                      +.+++. +.+++|||++++.+|++++|++ +||+++|++|+....+.|.++.+.|++|+.+++++. +..++..    ++
T Consensus       160 ~~~~~~-v~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~~~-~~~i~~~~~~~~l  236 (780)
T 3apo_A          160 KEVDGL-LRIGAVNCGDDRMLCRMKGVNS-YPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRST-VTELSTGNFVNAI  236 (780)
T ss_dssp             HHTTTT-SEEEEEETTTCSSCC---------CEEEEECTTSCCEECCSCSCHHHHHHHHHTTSCCC-EEECCHHHHHHHH
T ss_pred             HHhcCc-eEEEEEeCCCcHHHHHHcCCce-eeeEEEEeCCcEeeEecCCCCHHHHHHHHHHhchhh-heeccchhhHHHH
Confidence            999874 9999999999999999999998 999999999986544556679999999999999988 4555554    45


Q ss_pred             HHHHhhhhcCCceEEEEEecCCc---hhHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCC--
Q psy16770        250 DAFLDNWREDNKVHALLFQRSLP---VRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKD--  324 (554)
Q Consensus       250 ~~fl~~~~~~~~~~v~~f~~~~~---~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~--  324 (554)
                      ++++    +.+.+.|++|.+...   ........+..+++.+.||+++|+  .+..+++++++++ .| +++|++...  
T Consensus       237 ~~~~----~~~~~~vi~f~~~~~~~~~~~~~~~l~~~f~~~~~f~~v~c~--~~~~l~~~~gi~~-~p-~~~f~~~~~~~  308 (780)
T 3apo_A          237 ETAF----AAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCD--AQDSLCKSLDTTA-ST-TAYFPPGATLN  308 (780)
T ss_dssp             HHHH----HHTCEEEEEEECTTSCCCCHHHHHHHHHHTTTTEEEEEEETT--TSHHHHTCC------C-EEEECTTCCSS
T ss_pred             Hhhh----ccCCCEEEEEecCcccccCHHHHHHHHHHhhccceEEEEEcC--CCHHHHHHhCCCC-Cc-eeeeccccccC
Confidence            5555    347778888876543   222333344467899999999998  5679999999996 56 777766321  


Q ss_pred             --CCCceeecCCCChhHHHhHHhcCCCcccccccchhhhhhcCCCCceEEEEEcCCCCcchhHHHHHHHHHhhccCCCCc
Q psy16770        325 --RPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNN  402 (554)
Q Consensus       325 --~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~c~~~~lcvvl~~~~~~~~~~~~~~l~~~a~~~~~~~~~  402 (554)
                        .....++.+.++...|..|+.. ..|.+.++|..++.. .+...++ +|+|.... +.+...+.++++|..  ++++.
T Consensus       309 ~~~~~~~~y~g~~~~~~i~~~i~~-~~p~v~~it~~~f~~-~~~~~~~-lv~F~~~~-~~~~~~~~~~~~A~~--~~~~~  382 (780)
T 3apo_A          309 DREKSSVLFLNSLDAKEIYMEIIH-NLPDFELLSANQLED-RLAHHRW-LVFFHFGK-NENANDPELKKLKTL--LKNEH  382 (780)
T ss_dssp             TTTGGGSEEECCCCHHHHHHHHHH-HSCCCCEECHHHHHH-HHTTSEE-EEEEECC------CCGGGGGHHHH--HGGGT
T ss_pred             CCcccceeccccccHHHHHHHHHH-hCCCcccCCHHHHHH-HhccCCe-EEEEecCC-ccccchHHHHHHHHh--hccCc
Confidence              1123567889999999999995 889999998665543 3323344 44454332 223345688888888  77667


Q ss_pred             eEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCC-eeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCC
Q psy16770        403 IAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKK-IKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPY  479 (554)
Q Consensus       403 v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~  479 (554)
                      +.|+|+|+..++.++..+    +..  .|.+ ++.  +... ..+..++|         +.+.+.|.+|+..-..+..
T Consensus       383 i~f~~~D~~~~~~~~~~~----~~~--~p~i-~l~--~~~~~e~~~~~~g---------~~~~~~i~~f~~~~~~~~v  442 (780)
T 3apo_A          383 IQVVRFDCSSAPGICSDL----YVF--QPSL-AVF--KGQGTKEYEIHHG---------KKILYDILAFAKESVNSHV  442 (780)
T ss_dssp             EEEEEEEGGGCHHHHHHT----TCC--SCEE-EEE--ESSTTSSEEECCS---------CCCHHHHHHHHHHHHTSCE
T ss_pred             eeEEEEeCCCchhhHhhc----ccc--CChh-hhc--cCCCcceeeeccc---------HhhHHHHHHHhhhccCCCC
Confidence            999999999889999887    111  1222 223  2223 33555565         3688999999988665544

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=100.00  E-value=4.2e-39  Score=335.09  Aligned_cols=324  Identities=15%  Similarity=0.195  Sum_probs=247.0

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEccccccccc---ch---HHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQ---VE---PIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGV  200 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~---l~---p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v  200 (554)
                      +.+++||.+||++.|   +++++++|+||||||+||+.   ++   |.|+++++.+++.++.+++|||+.++.+|++|||
T Consensus        13 ~~v~~lt~~~f~~~i---~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V   89 (367)
T 3us3_A           13 DRVINVNAKNYKNVF---KKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL   89 (367)
T ss_dssp             CCCEECCTTTHHHHH---HHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTC
T ss_pred             CccEECCHHHHHHHH---hhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCC
Confidence            468999999999988   46789999999999999733   23   7999999999876799999999999999999999


Q ss_pred             cCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-
Q psy16770        201 GSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-  279 (554)
Q Consensus       201 ~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-  279 (554)
                      ++ +||+++|++|+++.|.|+ ++++.|++|+.+++++++..+.+.+++++|+..  +...++|++|.+...+....+. 
T Consensus        90 ~~-~PTl~~f~~G~~~~y~G~-~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~--~~~~~vv~ff~~~~~~~~~~f~~  165 (367)
T 3us3_A           90 TE-EDSIYVFKEDEVIEYDGE-FSADTLVEFLLDVLEDPVELIEGERELQAFENI--EDEIKLIGYFKNKDSEHYKAFKE  165 (367)
T ss_dssp             CS-TTEEEEEETTEEEECCSC-CSHHHHHHHHHHHHSCSEEECCSHHHHHHHHHC--CSSCEEEEECSCTTCHHHHHHHH
T ss_pred             Cc-CceEEEEECCcEEEeCCC-CCHHHHHHHHHHhcCCCcEEcCCHHHHHHHhcc--CCCcEEEEEECCCCchHHHHHHH
Confidence            98 999999999998877765 589999999999999884444456889999852  1344555566554555444444 


Q ss_pred             HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecC-CCChhHHHhHHhcCCCcccccccch
Q psy16770        280 NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMN-SIPVPTLQDITDNNPYLTLPRISSQ  358 (554)
Q Consensus       280 ~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~-~~~~~~l~~fi~~~~~~~v~~lt~~  358 (554)
                      .|..+++++.||.+     .+.+++++|+++  .|+|++|++..+.+  ..+.+ .++.+.|.+||+.+.+|+++++|.+
T Consensus       166 ~A~~~~~~~~F~~~-----~~~~~~~~~~v~--~p~i~lf~~~~~~~--~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~  236 (367)
T 3us3_A          166 AAEEFHPYIPFFAT-----FDSKVAKKLTLK--LNEIDFYEAFMEEP--VTIPDKPNSEEEIVNFVEEHRRSTLRKLKPE  236 (367)
T ss_dssp             HHHHHTTTSCEEEE-----CCHHHHHHHTCC--TTCEEEECTTCSSC--EECSSSSCCHHHHHHHHHHTCSCSEEECCGG
T ss_pred             HHHhhcCCcEEEEE-----CCHHHHHHcCCC--CCeEEEEcCCCCCC--eecCCCCCCHHHHHHHHHHcCccceeecChh
Confidence            34477889999999     678999999998  59999999865554  45666 4889999999999999999999998


Q ss_pred             hhhhhcCC-CCceEEEEEcCC-CCcchhHHHHHHHHHhhccCCCC-ceEEEEEecccchHHHH----hhCCCCCCccccc
Q psy16770        359 SMLDAVCP-VKKLCVVLFSED-SPEHDASRHTLRRFAQESRFVHN-NIAFMYVFIEKQPEFVN----ALTSPEDSSEISL  431 (554)
Q Consensus       359 ~~~~~~c~-~~~lcvvl~~~~-~~~~~~~~~~l~~~a~~~~~~~~-~v~F~~vd~~~q~~~~~----~~~~~~~~~~~~~  431 (554)
                      +.....+. ..+.++++|... ..+..+..+.|+++|++  ++++ ++.|+|+|++.++..++    .|    |..   .
T Consensus       237 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~vA~~--~~~~~ki~F~~id~~~~~~~l~~~~~~f----gl~---~  307 (367)
T 3us3_A          237 SMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQD--NTDNPDLSIIWIDPDDFPLLVPYWEKTF----DID---L  307 (367)
T ss_dssp             GHHHHHHSCBTTEEEEEECCTTSHHHHHHHHHHHHHHHH--TTTCTTCCEEEECGGGCTTTHHHHHHHH----TCC---T
T ss_pred             hHHHHHhhccCCcEEEEEEcCCChhHHHHHHHHHHHHHH--cCCCCceEEEEECCccchhHHHHHHHhc----CCC---C
Confidence            87655432 133455556653 33457788899999999  9874 69999999998776543    35    211   1


Q ss_pred             eEEEEEEecCCC---eeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCCCc
Q psy16770        432 HIAAMWRMDYKK---IKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNL  482 (554)
Q Consensus       432 ~~~~v~~~~~~~---~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~~~  482 (554)
                      ++|.+.+.+..+   .+| .+++.      ...+|.++|.+|+++++.|+.+|-
T Consensus       308 ~~P~~~i~~~~~~~~~~y-~~~~~------~~~~t~~~i~~F~~~~~~Gkl~p~  354 (367)
T 3us3_A          308 SAPQIGVVNVTDADSVWM-EMDDE------EDLPSAEELEDWLEDVLEGEINTE  354 (367)
T ss_dssp             TSCEEEEEETTTCCEEEC-CCCTT------SCCCCHHHHHHHHHHHHHTSSCC-
T ss_pred             CCCeEEEEecccccceee-cCCcc------cccCCHHHHHHHHHHHHcCCcCcc
Confidence            344444444443   244 33320      015799999999999999999743

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=100.00  E-value=1.9e-37  Score=320.82  Aligned_cols=319  Identities=16%  Similarity=0.192  Sum_probs=249.0

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHH-------HHHHHHHhCCCCEEEEEEEecCcHHHHHHhC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPI-------FKKLMDELSPLGVGFFTVHVHNEQGLARRLG  199 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~-------~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~  199 (554)
                      ..+++||.++|++.+   ..+++++|+||||||+ |+++.|.       |+++++.+++.++.+++|||+.++++|++|+
T Consensus        11 ~~v~~l~~~~f~~~i---~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~   86 (350)
T 1sji_A           11 DRVVSLTEKNFKQVL---KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLG   86 (350)
T ss_dssp             CCCEEECHHHHHHHH---TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHT
T ss_pred             CccEECCHHHHHHHH---hhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcC
Confidence            358899999999988   4578999999999999 9999999       9999999986579999999999999999999


Q ss_pred             CcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHh-hhhcCCceEEEEEecCCchhHHHH
Q psy16770        200 VGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLD-NWREDNKVHALLFQRSLPVRLRYL  278 (554)
Q Consensus       200 v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~-~~~~~~~~~v~~f~~~~~~~~~~~  278 (554)
                      |++ +||+++|++|++..|.|+ ++.+.|++|+.+.+++++..+.+.+++++|+. .   ...++|++|.+..++....+
T Consensus        87 v~~-~Pt~~~~~~g~~~~~~G~-~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~---~~~~vv~ff~~~~~~~~~~~  161 (350)
T 1sji_A           87 FDE-EGSLYVLKGDRTIEFDGE-FAADVLVEFLLDLIEDPVEIINSKLEVQAFERIE---DQIKLIGFFKSEESEYYKAF  161 (350)
T ss_dssp             CCS-TTEEEEEETTEEEEECSC-CCHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCC---SSCEEEEECSCTTSHHHHHH
T ss_pred             CCc-cceEEEEECCcEEEecCC-CCHHHHHHHHHHhcCCcceeccchHHHHHHhccC---CCcEEEEEECCCCcHHHHHH
Confidence            998 999999999997777765 68999999999999988443335688999985 3   34455556655455444444


Q ss_pred             HHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCC-CChhHHHhHHhcCCCccccccc
Q psy16770        279 INAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNS-IPVPTLQDITDNNPYLTLPRIS  356 (554)
Q Consensus       279 ~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~-~~~~~l~~fi~~~~~~~v~~lt  356 (554)
                      ..++ .+++++.||.+     .+++++++++++  .|+|++|++..+.+  ..+.++ ++...|.+||+.+..|+++++|
T Consensus       162 ~~~A~~~~~~~~f~~~-----~~~~~~~~~~v~--~p~i~~~~~~~~~~--~~y~g~~~~~~~l~~fi~~~~~p~v~elt  232 (350)
T 1sji_A          162 EEAAEHFQPYIKFFAT-----FDKGVAKKLSLK--MNEVDFYEPFMDEP--IAIPDKPYTEEELVEFVKEHQRPTLRRLR  232 (350)
T ss_dssp             HHHHHHTTTTSEEEEE-----CCHHHHHHHTCC--TTCEEEECTTCSSC--EECSSSSCCHHHHHHHHHHHCCCSEEECC
T ss_pred             HHHHHhhccCcEEEEE-----CCHHHHHHcCCC--CCcEEEEeCCCCCc--eecCCCCCCHHHHHHHHHHcCccchhhcC
Confidence            4333 67899999999     678899999998  79999999865555  456676 8899999999999999999999


Q ss_pred             chhhhhhcCCC--CceEEEEEcCCC-CcchhHHHHHHHHHhhccCCC-CceEEEEEecccchHHH----HhhCCCCCCcc
Q psy16770        357 SQSMLDAVCPV--KKLCVVLFSEDS-PEHDASRHTLRRFAQESRFVH-NNIAFMYVFIEKQPEFV----NALTSPEDSSE  428 (554)
Q Consensus       357 ~~~~~~~~c~~--~~lcvvl~~~~~-~~~~~~~~~l~~~a~~~~~~~-~~v~F~~vd~~~q~~~~----~~~~~~~~~~~  428 (554)
                      .++..+ .|..  +++|+++|.... .++.+.++.|+++|++  +++ +++.|+|+|++.++.++    +.|    |.. 
T Consensus       233 ~~~~~~-~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~--~~~~~~~~f~~id~~~~~~~~~~~~~~~----gi~-  304 (350)
T 1sji_A          233 PEDMFE-TWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARD--NTDNPDLSIVWIDPDDFPLLVAYWEKTF----KID-  304 (350)
T ss_dssp             TTTHHH-HHHSCSSSEEEEEECCTTSHHHHHHHHHHHHHHHH--GGGCSSCCEEEECGGGCHHHHHHHHHHC----CSC-
T ss_pred             hhhHHH-HhcCCCCCcEEEEEEcCCCccHHHHHHHHHHHHHH--hCCCCceEEEEECchhhHHHHHHHHhhc----CCC-
Confidence            888754 3422  267888776532 2346788899999999  873 56999999999888877    556    211 


Q ss_pred             ccceEEEEEEecC-CCeeEEE-ecCCCCCcccccchhhHHHHHHHHhhhcCCC
Q psy16770        429 ISLHIAAMWRMDY-KKIKYGW-LLGDAVDDWKDYNTTKDRLDAGLRSLVNDPY  479 (554)
Q Consensus       429 ~~~~~~~v~~~~~-~~~ky~~-~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~  479 (554)
                        .++|++...+. ++.+|.. +++.      ..+.|.++|.+|+++++.|+.
T Consensus       305 --~~~P~~~i~~~~~~~~~~~~~~~~------~~~~~~~~i~~F~~d~~~Gkl  349 (350)
T 1sji_A          305 --LFKPQIGVVNVTDADSVWMEIPDD------DDLPTAEELEDWIEDVLSGKI  349 (350)
T ss_dssp             --TTSCEEEEEESSSSCEEESCSSCC------SCCCCHHHHHHHHHHHHTSCC
T ss_pred             --ccCCcEEEEecccccccccCCCcc------cccCCHHHHHHHHHHHhcCcc
Confidence              13455544454 3357853 3320      125789999999999999985

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=100.00  E-value=2e-38  Score=304.18  Aligned_cols=202  Identities=26%  Similarity=0.451  Sum_probs=168.3

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCCCCCCCCCccc
Q psy16770         19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTDGFSGQDSASR   97 (554)
Q Consensus        19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~~~~~~   97 (554)
                      .|||++|||+++|+.++||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||.+|..+......    
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~~----   77 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQG----   77 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTTCS----
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccccc----
Confidence            58999999999999999999999999999999996 6789999999999999999999999999999875322211    


Q ss_pred             cccCCCCCCCCccccCCCCCCccccccccccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhC
Q psy16770         98 NFHNHMYNPFDDVFSEGFNFPFEEHDISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS  177 (554)
Q Consensus        98 ~~~~~~~~~f~~~f~~~~~f~f~~~~~~~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~  177 (554)
                          ..+..| ..|.+.  |++  ++ ....+..|+.++|+..+   ..+++++|.||++||++|+.+.|.|+++++.++
T Consensus        78 ----~~~~~~-~~~~~~--fg~--~~-~~~~v~~l~~~~f~~~~---~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~  144 (210)
T 3apq_A           78 ----GQYESW-SYYRYD--FGI--YD-DDPEIITLERREFDAAV---NSGELWFVNFYSPGCSHCHDLAPTWREFAKEVD  144 (210)
T ss_dssp             ----CCCCCH-HHHHHS--SST--TT-TCTTSEECCHHHHHHHH---HHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTB
T ss_pred             ----cccccc-cccccc--ccc--cC-CCCceEEecHHHHHHHH---ccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhc
Confidence                111111 112221  111  11 12357789999999988   467899999999999999999999999999997


Q ss_pred             CCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        178 PLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       178 ~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      + .+.++.|||+.++.+|++++|.+ +||+++|++|+.+....|.++.+.|.+|+.+.+++.
T Consensus       145 ~-~v~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~~~  204 (210)
T 3apq_A          145 G-LLRIGAVNCGDDRMLCRMKGVNS-YPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRST  204 (210)
T ss_dssp             T-TBEEEEEETTTCHHHHHHTTCCS-SSEEEEECTTSCCEECCSCCCHHHHHHHHHHHHHCC
T ss_pred             C-ceEEEEEECCccHHHHHHcCCCc-CCeEEEEECCCceeEecCCCCHHHHHHHHHHhCccc
Confidence            6 49999999999999999999997 999999999997766667778999999999998877

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=100.00  E-value=9.2e-37  Score=319.28  Aligned_cols=333  Identities=12%  Similarity=0.126  Sum_probs=227.0

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC-----CCEEEEEEEecCcHHHHHHhCCc
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-----LGVGFFTVHVHNEQGLARRLGVG  201 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~-----~~v~~~~Vd~~~~~~l~~~~~v~  201 (554)
                      ..+++||.++|+..+   ..+++++|+||||||+||+++.|.|+++++.++.     .++.+++|||+.++.+|++|+|+
T Consensus         5 ~~v~~l~~~~f~~~~---~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~   81 (382)
T 2r2j_A            5 SEITSLDTENIDEIL---NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRIS   81 (382)
T ss_dssp             ---CBCCTTTHHHHH---HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCC
T ss_pred             CceEECCHHHHHHHH---hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCC
Confidence            358899999999977   3578999999999999999999999999999952     24999999999999999999999


Q ss_pred             CCCCcceeccCCeEEE-EeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH
Q psy16770        202 SQLPQIALLTDGRTSF-FKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN  280 (554)
Q Consensus       202 ~~~Pti~~~~~g~~~~-y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~  280 (554)
                      + +||+++|++|+.+. .+.|.++.+.|++|+.+.+++++..+.+.++++. +.   ....+++++|.+...+....+..
T Consensus        82 ~-~Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~~~v~~l~~~~~l~~-l~---~~~~~~v~ff~~~~~~~~~~f~~  156 (382)
T 2r2j_A           82 K-YPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITT-LD---RSKRNIIGYFEQKDSDNYRVFER  156 (382)
T ss_dssp             E-ESEEEEEETTEEEEEECCSCCSHHHHHHHHHHHHSCCCEEC----------------CCEEEEEESCSSSHHHHHHHH
T ss_pred             c-CCEEEEEeCCcEeeeeecCcchHHHHHHHHHHhccCCceecCCHHHHHH-hc---CCCCEEEEEECCCCChhHHHHHH
Confidence            8 99999999998764 2345568999999999999888433334566777 43   24555666776655555444443


Q ss_pred             -hhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCC-ChhHHHhHHhcCCCcccccccch
Q psy16770        281 -AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSI-PVPTLQDITDNNPYLTLPRISSQ  358 (554)
Q Consensus       281 -a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~-~~~~l~~fi~~~~~~~v~~lt~~  358 (554)
                       |..+++++.|+.+.     + ++++++++++ .|  ++|++.........+.+++ +...|.+||+.+.+|+++++|.+
T Consensus       157 ~A~~~~~~~~F~~~~-----~-~~~~~~~v~~-~p--i~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~  227 (382)
T 2r2j_A          157 VANILHDDCAFLSAF-----G-DVSKPERYSG-DN--IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFE  227 (382)
T ss_dssp             HHHHHTTTCEEEEEE-----S-CC---------CE--EEEECSSSSSCCEECCSCTTCHHHHHHHHHHHHSCSSEECCHH
T ss_pred             HHHHhhccceEEEEe-----h-hhHHhhCCCC-Cc--eEECCCCCCCcCcccCCCCCCHHHHHHHHHhcccCceEecChh
Confidence             34778999999994     3 4778899986 67  5565543323346778888 88899999999999999999999


Q ss_pred             hhhhhcCCCCceEEEEEcCCCC-cchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEE
Q psy16770        359 SMLDAVCPVKKLCVVLFSEDSP-EHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMW  437 (554)
Q Consensus       359 ~~~~~~c~~~~lcvvl~~~~~~-~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~  437 (554)
                      +..+..|...++|++++..+.. ..+..++.+.++|.+  ++ +.+.|+|+|++.++.+++.|-..    .  .++|++.
T Consensus       228 ~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~--~~-~~i~f~~id~~~~~~~~~~~gl~----~--~~~P~i~  298 (382)
T 2r2j_A          228 NGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLIS--EK-GTINFLHADCDKFRHPLLHIQKT----P--ADCPVIA  298 (382)
T ss_dssp             HHHHHHTTCCCEEEEEECTTCCHHHHHHHHHHHHHTGG--GT-TTSEEEEEETTTTHHHHHHTTCC----G--GGCSEEE
T ss_pred             hHHHHhcCCCcEEEEEecCCchHHHHHHHHHHHHHHHH--hC-CeeEEEEEchHHhHHHHHHcCCC----c--cCCCEEE
Confidence            9888777656777777655421 123344555666666  65 46999999999999888887211    1  2456555


Q ss_pred             EecCCCeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCCCccccccccchhh
Q psy16770        438 RMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISD  493 (554)
Q Consensus       438 ~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~~~~~~~~lp~~~d  493 (554)
                      +.+..+ .|.. ...      ....+.+.|.+||++++.|+.+|..+++++|+-++
T Consensus       299 i~~~~~-~y~~-~~~------~~~~~~~~i~~F~~d~~~Gkl~p~~kse~~P~~~~  346 (382)
T 2r2j_A          299 IDSFRH-MYVF-GDF------KDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTDTA  346 (382)
T ss_dssp             EECSSC-EEEC-CCS------GGGGSTTHHHHHHHHHHHTTTSSCC----------
T ss_pred             EEcchh-cCCC-Ccc------ccccCHHHHHHHHHHHHCCCccccccCCCCCCCCC
Confidence            555433 3532 210      01356799999999999999999999999999764

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=100.00  E-value=1.8e-36  Score=326.76  Aligned_cols=351  Identities=14%  Similarity=0.218  Sum_probs=270.9

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+++||.++|++.|...+.+++++|+||||||++|+++.|.|+++++.+++. +.+++|||+.++.+|++|||++ +||+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~~~~~l~~~~~v~~-~Ptl   79 (481)
T 3f8u_A            2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCTANTNTCNKYGVSG-YPTL   79 (481)
T ss_dssp             CCEEECTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETTTCHHHHHHTTCCE-ESEE
T ss_pred             ceEEecHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECCCCHHHHHhcCCCC-CCEE
Confidence            4788999999999964444589999999999999999999999999999875 9999999999999999999998 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-ccCC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KHRT  286 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~~~  286 (554)
                      ++|++|+....+.|.++.+.|++|+.+++++++..+.+.+++++|+..   ....++++|.+..+.....+..++ .+++
T Consensus        80 ~~~~~g~~~~~~~G~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~vv~~~~~~~~~~~~~f~~~a~~~~~  156 (481)
T 3f8u_A           80 KIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISD---KDASIVGFFDDSFSEAHSEFLKAASNLRD  156 (481)
T ss_dssp             EEEETTEEEEECCSCSSHHHHHHHHHHHTSCSEEEECSHHHHHHHTTS---SSCEEEEEESCTTCHHHHHHHHHHHHHTT
T ss_pred             EEEeCCceeeeecCccCHHHHHHHHHhhcccCceecCCHHHHHHHHhc---CCcEEEEEECCCccchHHHHHHHHHHhcc
Confidence            999999765555566799999999999999985555577889998853   344444466555555544444444 7789


Q ss_pred             ceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCC----CCCCCceeec-CCCChhHHHhHHhcCCCcccccccchhhh
Q psy16770        287 TIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKED----KDRPSASITM-NSIPVPTLQDITDNNPYLTLPRISSQSML  361 (554)
Q Consensus       287 ~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~----~~~~~~~i~~-~~~~~~~l~~fi~~~~~~~v~~lt~~~~~  361 (554)
                      ++.||.+     .+.+++++|+++.  +.+++|++.    ........+. +.++...|.+||+.+++|+++++|.++..
T Consensus       157 ~~~F~~~-----~~~~~~~~~~v~~--~~i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~p~v~e~t~~n~~  229 (481)
T 3f8u_A          157 NYRFAHT-----NVESLVNEYDDNG--EGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKD  229 (481)
T ss_dssp             TSCEEEE-----CCHHHHHHHCSSS--EEEEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTTTTSCEECTTTHH
T ss_pred             CceEEEE-----CCHHHHHHhCCCC--CcEEEEecccccCccCCcccccCCCCCCHHHHHHHHHHhCCCCccccChhHHH
Confidence            9999999     6889999999984  569999831    1111224455 78899999999999999999999988865


Q ss_pred             hhcCCCCceEEEEEcCCCCcchh----HHHHHHHHHhhccCCCC--ceEEEEEecccchHHHHhhCCCCCCccccceEEE
Q psy16770        362 DAVCPVKKLCVVLFSEDSPEHDA----SRHTLRRFAQESRFVHN--NIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAA  435 (554)
Q Consensus       362 ~~~c~~~~lcvvl~~~~~~~~~~----~~~~l~~~a~~~~~~~~--~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~  435 (554)
                      ...  ..+++++++..+.....+    .++.++++|++  ++++  .+.|+|+|++.....++.|-..    ......|.
T Consensus       230 ~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~--~~~k~~~i~F~~~D~~~~~~~l~~~gl~----~~~~~~P~  301 (481)
T 3f8u_A          230 LIQ--GKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKK--FLDAGHKLNFAVASRKTFSHELSDFGLE----STAGEIPV  301 (481)
T ss_dssp             HHT--TSSEEEEEECCCTTTCHHHHHHHHHHHHHHHHH--HHHTTCCCEEEEEETTTTHHHHGGGTCC----CCTTCSCE
T ss_pred             Hhc--CCCceEEEEecccccchhhHHHHHHHHHHHHHH--hcCCCceEEEEEEcHHHHHHHHHHcCCC----cccCCCcE
Confidence            543  346666665543323222    57789999999  8654  3999999998888888777111    00124566


Q ss_pred             EEEecCCCeeEEEecCCCCCcccccchhhH--HHHHHHHhhhcCCCCCccccccccchhhhhhhHHHHHHHHHHH
Q psy16770        436 MWRMDYKKIKYGWLLGDAVDDWKDYNTTKD--RLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNRIF  508 (554)
Q Consensus       436 v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e--~l~~fl~~~~~g~~~~~~~~~~lp~~~de~~~~~~~r~~~~~~  508 (554)
                      +...+.++.+|. +++         ++|.+  .|.+|+++++.|+..+..+++++|+.+++.+..+.+..|.+++
T Consensus       302 ~~i~~~~~~ky~-~~~---------~~t~e~~~l~~f~~~~~~g~~~~~~~s~~~p~~~~~~v~~~~~~~~~~~~  366 (481)
T 3f8u_A          302 VAIRTAKGEKFV-MQE---------EFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIV  366 (481)
T ss_dssp             EEEECSSSCEEE-CCS---------CCCTTSHHHHHHHHHHHHTCCCCCCCCCCCCSCCCSSSEEECTTTHHHHH
T ss_pred             EEEEcCCCcccC-CCc---------ccCccHHHHHHHHHHHhcCCcccccccCCCCCCCCCCeEEecccCHHHHh
Confidence            656666667884 443         35667  9999999999999999889999998877777777777777643

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=100.00  E-value=2.5e-34  Score=311.74  Aligned_cols=343  Identities=12%  Similarity=0.145  Sum_probs=253.5

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      ..+++||.++|++.+   +.+++++|+||||||+||+++.|.|+++++.+++.++.+++|||+.++.+|++|||++ +||
T Consensus        14 ~~v~~l~~~~f~~~~---~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~-~Pt   89 (504)
T 2b5e_A           14 SAVVKLATDSFNEYI---QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPG-FPS   89 (504)
T ss_dssp             SSCEECCTTTHHHHH---TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCS-SSE
T ss_pred             CCcEECCHHHHHHHH---hcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCc-CCE
Confidence            358899999999988   4678999999999999999999999999999987569999999999999999999998 999


Q ss_pred             ceeccCCe---EEEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCC--ceEEEEEecCCchhHH-HHHH
Q psy16770        207 IALLTDGR---TSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDN--KVHALLFQRSLPVRLR-YLIN  280 (554)
Q Consensus       207 i~~~~~g~---~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~--~~~v~~f~~~~~~~~~-~~~~  280 (554)
                      +++|++|+   ...|. |.++.+.|++|+.+.++++ +..+++  +++|+..   ..  .+++++|.+..+.... +...
T Consensus        90 ~~~~~~g~~~~~~~~~-G~~~~~~l~~~l~~~~~~~-v~~i~~--~~~~~~~---~~~~~~~v~~f~~~~~~~~~~f~~~  162 (504)
T 2b5e_A           90 LKIFKNSDVNNSIDYE-GPRTAEAIVQFMIKQSQPA-VAVVAD--LPAYLAN---ETFVTPVIVQSGKIDADFNATFYSM  162 (504)
T ss_dssp             EEEEETTCTTCEEECC-SCCSHHHHHHHHHHHTSCS-EEECSC--HHHHHHH---SCCSSCEEEEEESCCHHHHHHHHHH
T ss_pred             EEEEeCCccccceeec-CCCCHHHHHHHHHHhcCCc-ceeHHH--HHHHHhc---CCCceEEEEEeCCCCchHHHHHHHH
Confidence            99999998   55555 5569999999999999988 566655  8889864   34  6777788764444433 3344


Q ss_pred             hhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCC-C---ChhHHHhHHhcCCCccccccc
Q psy16770        281 AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNS-I---PVPTLQDITDNNPYLTLPRIS  356 (554)
Q Consensus       281 a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~-~---~~~~l~~fi~~~~~~~v~~lt  356 (554)
                      |..+++++.||.+.       +++++++++     +++|++.. .+  ..+.+. +   +...|.+||..+.+|.++++|
T Consensus       163 A~~~~~~~~F~~~~-------~~~~~~~~~-----i~l~~~~~-~~--~~~~g~~~~~~~~~~l~~fi~~~~~p~v~~~t  227 (504)
T 2b5e_A          163 ANKHFNDYDFVSAE-------NADDDFKLS-----IYLPSAMD-EP--VVYNGKKADIADADVFEKWLQVEALPYFGEID  227 (504)
T ss_dssp             HHHTTTTCEEEEEE-------CTTSCCEEE-----EEETTEEE-EE--EECCSCHHHHTSHHHHHHHHHHHSSCSSCBCC
T ss_pred             HHHhhcCcEEEEEH-------HHHHhcCCe-----EEecCCCC-cc--cccCCcccccCCHHHHHHHHHhcccCCcccCC
Confidence            44788999999983       567777764     78887643 22  456676 6   888999999999999999999


Q ss_pred             chhhhhhcCCCCceEEEEEcCCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEE
Q psy16770        357 SQSMLDAVCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAM  436 (554)
Q Consensus       357 ~~~~~~~~c~~~~lcvvl~~~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v  436 (554)
                      .++.... +..+...++++.....+.+...+.++++|++  +++ .++|+|+|++.++.+++.|-. .      .++|++
T Consensus       228 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~a~~--~~~-~i~F~~id~~~~~~~~~~~gl-~------~~~P~v  296 (504)
T 2b5e_A          228 GSVFAQY-VESGLPLGYLFYNDEEELEEYKPLFTELAKK--NRG-LMNFVSIDARKFGRHAGNLNM-K------EQFPLF  296 (504)
T ss_dssp             HHHHHHH-HHTTSCEEEEEESSHHHHHHHHHHHHHHHHH--TTT-TCEEEEEEHHHHTTHHHHTTC-C------SCSSEE
T ss_pred             HhHHHHH-hcCCCcEEEEEecCcccHHHHHHHHHHHHHh--cCC-eeEEEEEehhhhHHHHHHcCC-c------ccCCEE
Confidence            8776443 3222222233333322336788899999999  975 599999999998899998822 1      134444


Q ss_pred             EEecC-CCeeEEEec-CCC--CCcccccchhhHHHHHHHHhhhcCCCCCccccccccchhhhhhhHHHHHHHHH
Q psy16770        437 WRMDY-KKIKYGWLL-GDA--VDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYIQSLGVRIFNR  506 (554)
Q Consensus       437 ~~~~~-~~~ky~~~~-~~~--~~~~~~~~~t~e~l~~fl~~~~~g~~~~~~~~~~lp~~~de~~~~~~~r~~~~  506 (554)
                      ...+. ++.+|.+.. +.+  ..-.....+|.+.|.+|+++++.|+..|..+++.+|+-++..+..+.+..|.+
T Consensus       297 ~i~~~~~~~ky~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~g~~~p~~~s~~~p~~~~~~v~~l~~~~f~~  370 (504)
T 2b5e_A          297 AIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDE  370 (504)
T ss_dssp             EEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCCCCCCCCCCCCCSCSEEEECTTTHHH
T ss_pred             EEEeCCcCcccCCCCCccchhhccccccccCHHHHHHHHHHHHcCCCChhhhcCCCCccccccceecccccHHH
Confidence            33343 557885321 200  00000001678999999999999999887777778765555555555555555

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.1e-28  Score=242.54  Aligned_cols=223  Identities=18%  Similarity=0.246  Sum_probs=182.9

Q ss_pred             cccccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec--CcHHHHHHhCCc
Q psy16770        124 ISLFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH--NEQGLARRLGVG  201 (554)
Q Consensus       124 ~~~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~--~~~~l~~~~~v~  201 (554)
                      .....+++||.++|++.|.  +.+++++|+|||+||++|+++.|.|+++++.+.+. +.++.|||+  .++.+|++|+|.
T Consensus        14 ~~~~~vv~lt~~~f~~~i~--~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~-~~~~~v~~d~~~~~~l~~~~~I~   90 (298)
T 3ed3_A           14 DSDPHISELTPKSFDKAIH--NTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV-VQVAAVNCDLNKNKALCAKYDVN   90 (298)
T ss_dssp             SSCTTCEECCHHHHHHHHT--SSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTSTTTHHHHHHTTCC
T ss_pred             CCCCCeEEeCHHHHHHHHH--hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC-cEEEEEEccCccCHHHHHhCCCC
Confidence            3445789999999999995  45789999999999999999999999999999874 899999998  689999999999


Q ss_pred             CCCCcceeccCCe------------------EEEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceE
Q psy16770        202 SQLPQIALLTDGR------------------TSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVH  263 (554)
Q Consensus       202 ~~~Pti~~~~~g~------------------~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~  263 (554)
                      + +||+++|++|+                  ...|. |.++.+.|++|+.+++++.+..+.+.+++++|+..   .+++.
T Consensus        91 ~-~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~-G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~---~~~~~  165 (298)
T 3ed3_A           91 G-FPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYS-GARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRK---SPKLS  165 (298)
T ss_dssp             B-SSEEEEEECCCC-------------CCCEEEECC-SCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTS---CSSEE
T ss_pred             c-cceEEEEECCceeecccccccccccccccceeec-CCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhc---CCceE
Confidence            8 99999998886                  45565 45699999999999999985444466889999963   36888


Q ss_pred             EEEEecCCchhHHHHHHhhccCCceEEEEEEccCCCChhHH-----hHhC-----C------------CCCCceEEEEeC
Q psy16770        264 ALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVF-----QRFK-----V------------PGDKDSLLIFKE  321 (554)
Q Consensus       264 v~~f~~~~~~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~-----~k~~-----i------------~~~~Ptlvvfk~  321 (554)
                      +++|.+.......+...|..+++++.||.+..     .+++     ++|+     |            ....|+|++|++
T Consensus       166 vi~fs~~~~~~~~f~~~A~~~~~~~~F~~v~~-----~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~  240 (298)
T 3ed3_A          166 VVLFSKQDKISPVYKSIALDWLGKFDFYSISN-----KKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDA  240 (298)
T ss_dssp             EEEEESSSSCCHHHHHHHHHTBTTEEEEEEEG-----GGCCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEET
T ss_pred             EEEEcCCCcchHHHHHHHHHhhcCcEEEEEcc-----hHhhhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcC
Confidence            99998777777777777778899999999964     3333     2333     2            124899999998


Q ss_pred             CCCCCCceeec-CCCChhHHHhHHh--cCCCcccccccchhhh
Q psy16770        322 DKDRPSASITM-NSIPVPTLQDITD--NNPYLTLPRISSQSML  361 (554)
Q Consensus       322 ~~~~~~~~i~~-~~~~~~~l~~fi~--~~~~~~v~~lt~~~~~  361 (554)
                      ..+++  ..+. +.++.+.|.+||.  .++.|.++++|.++.+
T Consensus       241 ~~~~~--~~y~g~~~~~~~i~~fi~~~~~~~p~~~~ls~~~~~  281 (298)
T 3ed3_A          241 DKDKF--WEYEGNSINKNDISKFLRDTFSITPNEGPFSRRSEY  281 (298)
T ss_dssp             TTTEE--EECCCSSCCHHHHHHHHHHHHTCCCSSSTTSHHHHH
T ss_pred             CCCce--EEeccccCCHHHHHHHHHhhcCCCCCcCCCchHHHH
Confidence            66665  4555 5789999999999  8999999999986644

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.94  E-value=6.1e-25  Score=250.32  Aligned_cols=320  Identities=12%  Similarity=0.083  Sum_probs=241.5

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      ..+.++|.++|++.     .+++++|.|||+||++|+.+.|.|+++++.+++ ++.|+.|||+.++.+|++|||++ +||
T Consensus       440 ~~v~~l~~~~~~~~-----~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~-~v~~~~vd~~~~~~~~~~~~v~~-~Pt  512 (780)
T 3apo_A          440 SHVTTLGPQNFPAS-----DKEPWLVDFFAPWSPPSRALLPELRKASTLLYG-QLKVGTLDCTIHEGLCNMYNIQA-YPT  512 (780)
T ss_dssp             SCEEECCTTTSCTT-----CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCS-SSE
T ss_pred             CCCEecCHHHHHHc-----CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEeCCCCHHHHHHcCCCc-CCe
Confidence            45788999999875     467999999999999999999999999999987 59999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchh-----HHHHHHh
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVR-----LRYLINA  281 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~-----~~~~~~a  281 (554)
                      ++++++|+...|.| .++.++|.+|+.+.+.++ +..++.+++++++... ..+.+.++.|....-+.     ..+...|
T Consensus       513 ~~~~~~g~~~~~~g-~~~~~~l~~fi~~~~~~~-v~~l~~~~f~~~v~~~-~~~~~~lv~F~ap~C~~c~~~~p~~~~lA  589 (780)
T 3apo_A          513 TVVFNQSSIHEYEG-HHSAEQILEFIEDLRNPS-VVSLTPSTFNELVKQR-KHDEVWMVDFYSPWSHPSQVLMPEWKRMA  589 (780)
T ss_dssp             EEEEETTEEEEECS-CSCHHHHHHHHHHHHSCS-EEECCHHHHHHHTTTC-CTTCCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred             EEEEcCCceeeecC-cccHHHHHHHHHhhcccc-eeecCcccHHHHhhcc-CCCCeEEEEEECCCCHHHHHhhHHHHHHH
Confidence            99999898866664 468899999999999887 6778888999988542 22455555554322111     1122223


Q ss_pred             hccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCC-CceeecC-CCChhHHHhHHhcCCCcccccccchh
Q psy16770        282 FKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRP-SASITMN-SIPVPTLQDITDNNPYLTLPRISSQS  359 (554)
Q Consensus       282 ~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~-~~~i~~~-~~~~~~l~~fi~~~~~~~v~~lt~~~  359 (554)
                      ..+++.+.|+.++++  .+..++++|+|++ +|++++|+.+.... ....+.+ ..+.+.|.+|+..+..+.+.+++..+
T Consensus       590 ~~~~~~v~~~~vd~~--~~~~l~~~~~v~~-~Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~~~v~~l~~~~  666 (780)
T 3apo_A          590 RTLTGLINVGSVDCG--QYHSFCTQENVQR-YPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQT  666 (780)
T ss_dssp             HHHTTTSEEEEEETT--TTHHHHHHTTCCS-SSEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSCCCSEEECHHH
T ss_pred             HHhhCCeEEEEEECc--chHHHHHHcCCCC-CCeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhcccccccCCHHH
Confidence            356788999999998  6788999999997 99999998754421 1234667 78899999999999988899999877


Q ss_pred             hhhhcCCCCceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEE
Q psy16770        360 MLDAVCPVKKLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWR  438 (554)
Q Consensus       360 ~~~~~c~~~~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~  438 (554)
                      +.+.++..++.++|.|. +....+....+.+.++|++  +++ .+.|++||++..+++++.+-..     ..|.+.++ .
T Consensus       667 ~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~--~~~-~~~~~~vd~~~~~~~~~~~~v~-----~~Pt~~~~-~  737 (780)
T 3apo_A          667 FNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARM--IKG-KVRAGKVDCQAYPQTCQKAGIK-----AYPSVKLY-Q  737 (780)
T ss_dssp             HHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHH--HTT-TCEEEEEETTTCHHHHHHTTCC-----SSSEEEEE-E
T ss_pred             HHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHH--hcC-CceEEEEECCCCHHHHHhcCCC-----cCCEEEEE-c
Confidence            76666545566666665 4555667778899999998  864 5999999999999999888111     11333333 3


Q ss_pred             ecCCCeeEEEec-CCCCCcccccchhhHHHHHHHHhhhcC
Q psy16770        439 MDYKKIKYGWLL-GDAVDDWKDYNTTKDRLDAGLRSLVND  477 (554)
Q Consensus       439 ~~~~~~ky~~~~-~~~~~~~~~~~~t~e~l~~fl~~~~~g  477 (554)
                      ......++.-.. |         ..+.+.|.++|++.++.
T Consensus       738 ~g~~~~~~~G~~~g---------~~~~~~l~~~l~~~l~~  768 (780)
T 3apo_A          738 YERAKKSIWEEQIN---------SRDAKTIAALIYGKLET  768 (780)
T ss_dssp             EETTTTEEEEEEEC---------CCCHHHHHHHHHHHTTC
T ss_pred             CCCccccccCcccC---------CcCHHHHHHHHHHHHHH
Confidence            222223443221 1         24778999999998854

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.92  E-value=2.4e-24  Score=209.84  Aligned_cols=209  Identities=18%  Similarity=0.270  Sum_probs=166.6

Q ss_pred             cccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCC--EEEEEEEecCcHHHHHHhCCcCC
Q psy16770        126 LFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG--VGFFTVHVHNEQGLARRLGVGSQ  203 (554)
Q Consensus       126 ~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~--v~~~~Vd~~~~~~l~~~~~v~~~  203 (554)
                      ...+..||.++|+..+   ..+++++|+|||+||++|+.+.|.|+++++.+++.+  +.++.|||+.++.+|++|+|++ 
T Consensus        14 ~~~v~~l~~~~~~~~~---~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~-   89 (241)
T 3idv_A           14 ENGVLVLNDANFDNFV---ADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSG-   89 (241)
T ss_dssp             ETTEEEECTTTHHHHH---TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCS-
T ss_pred             CCCcEEecccCHHHHH---hcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCc-
Confidence            3468899999999988   467899999999999999999999999999997543  9999999999999999999997 


Q ss_pred             CCcceeccCCeEEEEeCCcccHHHHHHHHHHhCCCC------ccccCCcccHHHHHhhhhcCCceEEEEEecC-------
Q psy16770        204 LPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK------LIVPLSATNVDAFLDNWREDNKVHALLFQRS-------  270 (554)
Q Consensus       204 ~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~------~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~-------  270 (554)
                      +||+++|++|+.+.+.|+ ++.+.|.+|+.+.+.+.      .+..++.+++++++..    ++++++.|...       
T Consensus        90 ~Pt~~~~~~g~~~~~~g~-~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~f~a~wC~~C~~  164 (241)
T 3idv_A           90 YPTIKILKKGQAVDYEGS-RTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVND----ADIILVEFYAPWCGHCKK  164 (241)
T ss_dssp             SSEEEEEETTEEEECCSC-SCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHH----CSEEEEEEECTTCTGGGG
T ss_pred             CCEEEEEcCCCcccccCc-ccHHHHHHHHhhccCcccccccccceeccHHHHHHhhcc----CCeEEEEEECCCCHHHHH
Confidence            999999999998876655 58899999999876442      3556788999988853    56777766432       


Q ss_pred             CchhHHHHHHhhcc-CCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCC
Q psy16770        271 LPVRLRYLINAFKH-RTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPY  349 (554)
Q Consensus       271 ~~~~~~~~~~a~~~-~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~  349 (554)
                      ..+.+...+..... ...+.|+.++++  .+.+++++|+|.+ .||+++|+++.  +  ..+.|..+...|.+||..+.-
T Consensus       165 ~~p~~~~~a~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~-~Pt~~~~~~g~--~--~~~~g~~~~~~l~~~l~~~~~  237 (241)
T 3idv_A          165 LAPEYEKAAKELSKRSPPIPLAKVDAT--AETDLAKRFDVSG-YPTLKIFRKGR--P--YDYNGPREKYGIVDYMIEQSG  237 (241)
T ss_dssp             THHHHHHHHHHHHTSSSCCCEEEEETT--TCHHHHHHTTCCS-SSEEEEEETTE--E--EECCSCCSHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHhccCCcEEEEEEECC--CCHHHHHHcCCcc-cCEEEEEECCe--E--EEecCCCCHHHHHHHHHhhhC
Confidence            22333333333321 244999999987  6889999999997 99999998743  2  336888899999999987644


Q ss_pred             c
Q psy16770        350 L  350 (554)
Q Consensus       350 ~  350 (554)
                      +
T Consensus       238 ~  238 (241)
T 3idv_A          238 A  238 (241)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.90  E-value=7.4e-23  Score=200.38  Aligned_cols=206  Identities=11%  Similarity=0.184  Sum_probs=163.2

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC--CCEEEEEEEe--cCcHHHHHHhCCcC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP--LGVGFFTVHV--HNEQGLARRLGVGS  202 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~--~~v~~~~Vd~--~~~~~l~~~~~v~~  202 (554)
                      +.+.+||.++|+..+.  ..+++++|+|||+||++|+++.|.|+++++.+.+  .++.+++|||  +.+..+|++|+|.+
T Consensus        12 ~~v~~l~~~~f~~~i~--~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~   89 (244)
T 3q6o_A           12 DPLTLLQADTVRGAVL--GSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPG   89 (244)
T ss_dssp             SSSEEECTTTHHHHHS--SCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCS
T ss_pred             CCceeCChhhHHHHHh--hCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCc
Confidence            4688999999999886  4458999999999999999999999999999985  3599999999  67899999999997


Q ss_pred             CCCcceeccCC------eEEEEeCCcccHHHHHHHHHHhCCCCc---------cccCCcccHHHHHhhhhcCCceEEEEE
Q psy16770        203 QLPQIALLTDG------RTSFFKEPSFSVQKMVEFFRLKLPYKL---------IVPLSATNVDAFLDNWREDNKVHALLF  267 (554)
Q Consensus       203 ~~Pti~~~~~g------~~~~y~~g~~~~~~i~~fl~~~~~~~~---------v~~~t~~~~~~fl~~~~~~~~~~v~~f  267 (554)
                       +||+++|.+|      ... +.+| ++.+.|.+++.+.++...         ...++.+++..|+..  ...++.+++|
T Consensus        90 -~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~--~~~~~~al~f  164 (244)
T 3q6o_A           90 -FPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFAR--NNEEYLALIF  164 (244)
T ss_dssp             -SSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHH--CCCSEEEEEE
T ss_pred             -cCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhc--CCCceEEEEE
Confidence             9999999863      344 5556 488999999988764431         234567888888875  4678889999


Q ss_pred             ecCCchhHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770        268 QRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       268 ~~~~~~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~  345 (554)
                      .+......+.....+.....+.++.+..   .+..++++|+|++ +|++++|.++....  .+....-..+.+..+++
T Consensus       165 ~~~~~~~~~~~~~d~~~~~~i~v~~~~~---~~~~l~~~f~v~~-~Pslvl~~~~g~~~--~~~~~~~~r~~~~~~l~  236 (244)
T 3q6o_A          165 EXGGSYLAREVALDLSQHKGVAVRRVLN---TEANVVRKFGVTD-FPSCYLLFRNGSVS--RVPVLMESRSFYTAYLQ  236 (244)
T ss_dssp             ECTTCCHHHHHHHHTTTCTTEEEEEEET---TCHHHHHHHTCCC-SSEEEEEETTSCEE--ECCCSSSSHHHHHHHHH
T ss_pred             EECCcchHHHHHHHhccCCceEEEEEeC---chHHHHHHcCCCC-CCeEEEEeCCCCeE--eeccccccHHHHHHHHH
Confidence            9888777777777776667899988864   3589999999997 99999998754421  23333334555666665

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.86  E-value=6.2e-21  Score=205.56  Aligned_cols=188  Identities=13%  Similarity=0.245  Sum_probs=154.7

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC--CCEEEEEEEecC--cHHHHHHhCCcC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP--LGVGFFTVHVHN--EQGLARRLGVGS  202 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~--~~v~~~~Vd~~~--~~~l~~~~~v~~  202 (554)
                      +.+.+||.++|+..+.  +++++++|.|||+||++|+++.|.|+++++++++  .++.+++|||+.  +.++|++|+|.+
T Consensus        12 ~~V~~Lt~~~f~~~v~--~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~   89 (519)
T 3t58_A           12 DPLTLLDADSVRPTVL--GSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAG   89 (519)
T ss_dssp             SSSEEECTTTHHHHHS--SCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCS
T ss_pred             CCcEECChHHHHHHHH--hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcc
Confidence            4588999999999886  4568999999999999999999999999999985  259999999954  899999999997


Q ss_pred             CCCcceeccC----CeEE-EEeCCcccHHHHHHHHHHhCCCCc---------cccCCcccHHHHHhhhhcCCceEEEEEe
Q psy16770        203 QLPQIALLTD----GRTS-FFKEPSFSVQKMVEFFRLKLPYKL---------IVPLSATNVDAFLDNWREDNKVHALLFQ  268 (554)
Q Consensus       203 ~~Pti~~~~~----g~~~-~y~~g~~~~~~i~~fl~~~~~~~~---------v~~~t~~~~~~fl~~~~~~~~~~v~~f~  268 (554)
                       +||+++|.+    |+.. .+.|+ ++.+.|.+++.+.++...         +..++.+++++|+..  ...++++++|.
T Consensus        90 -~PTl~~f~~g~~~G~~~~~~~g~-~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~it~~~l~~~l~~--~~~~~vallF~  165 (519)
T 3t58_A           90 -FPTVRFFQAFTKNGSGATLPGAG-ANVQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTR--NKADYLALVFE  165 (519)
T ss_dssp             -BSEEEEECTTCCSCCCEEECCSS-CCHHHHHHHHHHHHTTCCSCCCTTCCCCSBCCHHHHTTGGGS--CCCSEEEEEEE
T ss_pred             -cCEEEEEcCcccCCCceeEecCC-CCHHHHHHHHHHHHhhccccCCCCCCccCcCCHHHHHHHhcc--CCCCeEEEEec
Confidence             999999974    4443 44445 689999999998765432         345667888888876  46788999999


Q ss_pred             cCCchhHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCC
Q psy16770        269 RSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKD  324 (554)
Q Consensus       269 ~~~~~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~  324 (554)
                      ++.+...+.....+.....+.++.+..   .+.+++++|+|+. +|++++|++++.
T Consensus       166 ~~~s~~~~~~~ldl~~~~~v~v~~v~~---~~~~l~~kfgV~~-~Pslvl~~~nGk  217 (519)
T 3t58_A          166 REDSYLGREVTLDLSQYHAVAVRRVLN---TESDLVNKFGVTD-FPSCYLLLRNGS  217 (519)
T ss_dssp             CTTCCHHHHHHHHTTTCTTEEEEEEET---TCHHHHHHHTCCC-SSEEEEEETTSC
T ss_pred             CCchHHHHHHHHHhhccCCeeEEEecC---chHHHHHHcCCCC-CCeEEEEeCCCc
Confidence            888777777777776667899998864   4689999999997 999999987554

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.83  E-value=1.9e-19  Score=176.95  Aligned_cols=236  Identities=11%  Similarity=0.138  Sum_probs=159.5

Q ss_pred             HhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCC
Q psy16770        234 LKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGD  312 (554)
Q Consensus       234 ~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~  312 (554)
                      ++++|++..+.+.++++.|+..   +..++|++|.+..++....+..++ .+++++.||.+     .+++++++|+++  
T Consensus         2 ~~~gP~v~~l~s~~~~~~~l~~---~~v~vvgff~~~~~~~~~~f~~~A~~lr~~~~F~~~-----~~~~v~~~~~~~--   71 (252)
T 2h8l_A            2 PLGSPASVPLRTEEEFKKFISD---KDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHT-----NVESLVNEYDDN--   71 (252)
T ss_dssp             ----CCEEECCSHHHHHHHHTS---SSCEEEEEESCTTSHHHHHHHHHHHHTTTTSCEEEE-----CCHHHHHHHCSS--
T ss_pred             CcCCCCceeecCHHHHHHHhhc---CCeEEEEEECCCCChHHHHHHHHHHhcccCcEEEEE-----ChHHHHHHhCCC--
Confidence            3566774444366889999953   345566677765666656665555 77899999999     678899999998  


Q ss_pred             CceEEEEeCC----CCCCCceee-cCCCChhHHHhHHhcCCCcccccccchhhhhhcCCCCceEEEEEcCCCCcc----h
Q psy16770        313 KDSLLIFKED----KDRPSASIT-MNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEH----D  383 (554)
Q Consensus       313 ~Ptlvvfk~~----~~~~~~~i~-~~~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~c~~~~lcvvl~~~~~~~~----~  383 (554)
                      .|+|++|++.    ........+ .++++...|.+||..+.+|+++++|.++.... . ..++|++++..+....    +
T Consensus        72 ~p~i~~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~-~-~~~~~v~~~~~~~~~~~~~~~  149 (252)
T 2h8l_A           72 GEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLI-Q-GKDLLIAYYDVDYEKNAKGSN  149 (252)
T ss_dssp             SEEEEEECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSSCSSCEECTTTHHHH-S-SSSEEEEEECCBTTTBHHHHH
T ss_pred             CCcEEEEcchhhcccccccccccCCCCcCHHHHHHHHHhcccCCeeecccccHhhh-c-CCCeEEEEeecchhhcchhHH
Confidence            4999999963    111122456 78889999999999999999999999887654 3 4578887776443222    3


Q ss_pred             hHHHHHHHHHhhccCCC--CceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCCeeEEEecCCCCCcccccc
Q psy16770        384 ASRHTLRRFAQESRFVH--NNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYN  461 (554)
Q Consensus       384 ~~~~~l~~~a~~~~~~~--~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~~~  461 (554)
                      .+++.++++|++  +++  ..+.|+|+|++.+..+++.|-...  ..  ..+|++.+.+.++.+|. +++         +
T Consensus       150 ~~~~~~~~vA~~--~~~k~~~~~F~~~d~~~~~~~~~~fgl~~--~~--~~~P~v~i~~~~~~ky~-~~~---------~  213 (252)
T 2h8l_A          150 YWRNRVMMVAKK--FLDAGHKLNFAVASRKTFSHELSDFGLES--TA--GEIPVVAIRTAKGEKFV-MQE---------E  213 (252)
T ss_dssp             HHHHHHHHHHHH--HHHTTCCCEEEEEETTTTHHHHGGGTCCC--CS--CSSCEEEEECTTSCEEE-CCS---------C
T ss_pred             HHHHHHHHHHHH--ccccCceEEEEEEchHHHHHHHHHcCCCC--cc--CCCCEEEEEeCcCcEec-CCc---------c
Confidence            578899999999  874  249999999998888877772200  11  24555555555677885 443         3


Q ss_pred             hhhHH--HHHHHHhhhcCCCCCccccccccchhhhhhh
Q psy16770        462 TTKDR--LDAGLRSLVNDPYNNLLYDTALKEISDEYIQ  497 (554)
Q Consensus       462 ~t~e~--l~~fl~~~~~g~~~~~~~~~~lp~~~de~~~  497 (554)
                      +|.++  |.+|+++++.|+..|.-+++++|+-+|+++.
T Consensus       214 ~t~~~~~i~~F~~~~~~Gkl~~~~kSe~iPe~~~~pV~  251 (252)
T 2h8l_A          214 FSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGAAA  251 (252)
T ss_dssp             CCTTSHHHHHHHHHHHHTCSCCCC--------------
T ss_pred             cCcchHHHHHHHHHHHCCCccccccCCCCCCCCCCCCC
Confidence            67778  9999999999999988899999999887764

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.83  E-value=2e-19  Score=176.55  Aligned_cols=232  Identities=15%  Similarity=0.094  Sum_probs=158.8

Q ss_pred             hCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCC
Q psy16770        235 KLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDK  313 (554)
Q Consensus       235 ~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~  313 (554)
                      +++|++..+.+.+++++|+..  ++..++|++|.+..++....+..++ .+++++.||.+     .+++++++++++  .
T Consensus         3 ~~gP~v~~l~s~~~~~~~~~~--~~~v~vVgff~~~~~~~~~~F~~~A~~lr~~~~F~~t-----~~~~v~~~~~v~--~   73 (250)
T 3ec3_A            3 LGSPPSKEILTLKQVQEFLKD--GDDVVILGVFQGVGDPGYLQYQDAANTLREDYKFHHT-----FSTEIAKFLKVS--L   73 (250)
T ss_dssp             --CCSSEECCCHHHHHHHHHH--CSSCEEEEECSCTTCHHHHHHHHHHHHHTTTCCEEEE-----CCHHHHHHHTCC--S
T ss_pred             CCCCCceecCCHHHHHHHHhc--CCCeEEEEEEcCCCchHHHHHHHHHHhhhcCcEEEEE-----CcHHHHHHcCCC--C
Confidence            456774444455889999853  1355566677666666666666666 67899999999     688999999997  4


Q ss_pred             ceEEEEeCC------CCCCCceeec--CCCChhHHHhHHhcCCCcccccccchhhhhhcCCCCceEEEEEcCCC-----C
Q psy16770        314 DSLLIFKED------KDRPSASITM--NSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDS-----P  380 (554)
Q Consensus       314 Ptlvvfk~~------~~~~~~~i~~--~~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~c~~~~lcvvl~~~~~-----~  380 (554)
                      |+|++|++.      .+..  ..+.  +.++...|.+||+.+.+|+++++|.++..... ..+.+|++++..+.     +
T Consensus        74 p~ivlfk~~~~~~kfde~~--~~y~g~~~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~-~~~~l~~~~~~~d~~~~~~~  150 (250)
T 3ec3_A           74 GKLVLMQPEKFQSKYEPRM--HVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKRY-SKRPLVVVYYSVDFSFDYRT  150 (250)
T ss_dssp             SEEEEECCGGGCCTTSCSC--EEEECCTTSCHHHHHHHHHHHSSCTEEEECTTTHHHHS-CSSSEEEEEECCCCSTTTHH
T ss_pred             CeEEEEecchhhccccccc--eeccCCCCCCHHHHHHHHHHcCCCceeecCccchhhhh-ccCccEEEEEecccccccch
Confidence            999999963      2222  3455  57889999999999999999999988875544 24567777765332     1


Q ss_pred             cchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCCeeEEEecCCCCCccccc
Q psy16770        381 EHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDY  460 (554)
Q Consensus       381 ~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~~  460 (554)
                      +.+.+++.++++|++  |+  ++.|+|+|++++...++.|-..    ..... |.+.+.+.++.+|.+..+         
T Consensus       151 ~~~~~~~~~~~vAk~--~k--ki~F~~~d~~~~~~~l~~fgl~----~~~~~-p~~~~~~~~~~ky~~~~~---------  212 (250)
T 3ec3_A          151 ATQFWRNKVLEVAKD--FP--EYTFAIADEEDYATEVKDLGLS----ESGGD-VNAAILDESGKKFAMEPE---------  212 (250)
T ss_dssp             HHHHHHHHHHHHHTT--CT--TSEEEEEETTTTHHHHHHTTCS----SCSCS-CEEEEECTTSCEEECCCC---------
T ss_pred             hHHHHHHHHHHHHHh--hc--ceeEEEEcHHHHHHHHHHcCCC----ccCCC-cEEEEEcCCCceecCCcc---------
Confidence            234578899999999  98  5999999998888888877111    11111 333444666789965322         


Q ss_pred             chhhHHHHHHHHhhhcCCCCCccccccccchhhhhh
Q psy16770        461 NTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDEYI  496 (554)
Q Consensus       461 ~~t~e~l~~fl~~~~~g~~~~~~~~~~lp~~~de~~  496 (554)
                      ++|.+.|.+|+++++.|+..|.-++++||+-+|+++
T Consensus       213 ~~t~~~i~~Fv~~~~~Gkl~p~~kSepiPe~~~~pV  248 (250)
T 3ec3_A          213 EFDSDALREFVMAFKKGKLKPVIKSQPVPKNNKGAA  248 (250)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCCCC-------------
T ss_pred             cCCHHHHHHHHHHHHCCCccceeecCCCCCCCCCCC
Confidence            478999999999999999999999999999987665

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.82  E-value=1.9e-20  Score=148.86  Aligned_cols=70  Identities=44%  Similarity=0.838  Sum_probs=66.8

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||+||||+++++.++||+|||+|++++|||+++++.+.++|+.|++||++|+||.+|+.||.+|..+
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   71 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence            3699999999999999999999999999999999998899999999999999999999999999998754

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=1.8e-20  Score=149.40  Aligned_cols=73  Identities=48%  Similarity=0.797  Sum_probs=68.8

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         15 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        15 ~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      +....|||+||||+++++.++||+|||+|+++||||+++.+++.++|++|++||++|+||.+|+.||.+|..+
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            3457899999999999999999999999999999999998899999999999999999999999999998754

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=2.1e-20  Score=152.54  Aligned_cols=73  Identities=45%  Similarity=0.818  Sum_probs=68.6

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         15 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        15 ~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      +....|||+||||++.++.++||+|||+|+++||||+++++.+.++|++|++||++|+||.+|+.||.+|..+
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (88)
T 2ctr_A            3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA   75 (88)
T ss_dssp             SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            3457899999999999999999999999999999999998889999999999999999999999999988654

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=5.7e-20  Score=146.95  Aligned_cols=73  Identities=53%  Similarity=0.860  Sum_probs=67.8

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         15 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        15 ~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      .....|||+||||+++++.++||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||.+|..+
T Consensus         3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            345789999999999999999999999999999999997 4788999999999999999999999999998753

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.80  E-value=5.3e-20  Score=150.14  Aligned_cols=73  Identities=52%  Similarity=1.002  Sum_probs=68.7

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         15 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        15 ~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      .....|||+||||+++++.++||+|||+|+++||||+++++.+.++|++|++||++|+||.+|+.||.+|..+
T Consensus        13 ~~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           13 SALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             CSSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             ccCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            3457899999999999999999999999999999999998899999999999999999999999999998753

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=9.6e-20  Score=146.73  Aligned_cols=73  Identities=45%  Similarity=0.834  Sum_probs=66.9

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         15 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP--TAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        15 ~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~--~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      +....|||+||||+++++.++||+|||+|+++||||+++..  .+.++|++|++||++|+||.+|+.||.+|..+
T Consensus         5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   79 (82)
T 2ej7_A            5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGP   79 (82)
T ss_dssp             CSSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCS
T ss_pred             CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            34568999999999999999999999999999999999753  67889999999999999999999999998754

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.78  E-value=7.1e-20  Score=154.00  Aligned_cols=70  Identities=47%  Similarity=0.858  Sum_probs=66.4

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|||+||||+++++.++||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||.+|..+
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA   72 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhh
Confidence            479999999999999999999999999999999997 4778999999999999999999999999999876

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.78  E-value=2e-19  Score=141.34  Aligned_cols=67  Identities=40%  Similarity=0.730  Sum_probs=62.2

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCC
Q psy16770         17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGT   85 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~   85 (554)
                      ...|||+||||+++++.++||+|||+|+++||||++++  +.++|++|++||++|+||.+|+.||.+|.
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD--GAEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT--CHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC--HHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            46899999999999999999999999999999999864  36899999999999999999999999885

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.78  E-value=2.3e-19  Score=151.86  Aligned_cols=98  Identities=20%  Similarity=0.404  Sum_probs=87.5

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD  212 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~  212 (554)
                      +.++|++.+.. ..+++++|.|||+||++|+.+.|.|+++++.+.  ++.+++||+++++++|++|+|++ +||+++|++
T Consensus         7 ~~~~f~~~l~~-~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~V~~-~PT~~~~~~   82 (105)
T 3zzx_A            7 DQEDFTKQLNE-AGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS--DVVFLKVDVDECEDIAQDNQIAC-MPTFLFMKN   82 (105)
T ss_dssp             SHHHHHHHHHH-TTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TEEEEEEETTTCHHHHHHTTCCB-SSEEEEEET
T ss_pred             CHHHHHHHHHh-cCCCEEEEEEECCCCCCccCCCcchhhhhhccC--CeEEEEEecccCHHHHHHcCCCe-ecEEEEEEC
Confidence            45789888753 347899999999999999999999999999886  48999999999999999999998 999999999


Q ss_pred             CeEEEEeCCcccHHHHHHHHHHh
Q psy16770        213 GRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       213 g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      |+.+.+..|. +.+.|.+|+.++
T Consensus        83 G~~v~~~~G~-~~~~l~~~i~k~  104 (105)
T 3zzx_A           83 GQKLDSLSGA-NYDKLLELVEKN  104 (105)
T ss_dssp             TEEEEEEESC-CHHHHHHHHHHH
T ss_pred             CEEEEEEeCc-CHHHHHHHHHhc
Confidence            9998888785 789999999864

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=2.4e-19  Score=147.66  Aligned_cols=73  Identities=42%  Similarity=0.756  Sum_probs=67.1

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         15 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND--PTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        15 ~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~--~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      +....|||+||||+++++.++||+|||+|+++||||+++.  +.+.++|++|++||++|+||.+|+.||..|..+
T Consensus         5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   79 (92)
T 2dmx_A            5 SSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDS   79 (92)
T ss_dssp             CCCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred             CCCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            3456899999999999999999999999999999999975  367899999999999999999999999998765

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.77  E-value=2.5e-18  Score=165.77  Aligned_cols=188  Identities=14%  Similarity=0.166  Sum_probs=137.0

Q ss_pred             CCCcEEEEEEcc-cccccccchHHHHHHHHHhCCCCEEEEEEEecC--cHHHHHHhCCcCCCCcceeccCCeE--EEEeC
Q psy16770        146 YTTPHLILFYSD-WCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--EQGLARRLGVGSQLPQIALLTDGRT--SFFKE  220 (554)
Q Consensus       146 ~~~~~lV~Fya~-wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~--~~~l~~~~~v~~~~Pti~~~~~g~~--~~y~~  220 (554)
                      .+.+++|.||++ ||++|+.+.|.|+++++. .+ ++.+++|||+.  ++++|++|||.+ +||+++|++|+.  ..|.|
T Consensus        21 ~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~-~v~~~~vd~~~~~~~~~~~~~~v~~-~Pt~~~~~~g~~~~~~~~G   97 (226)
T 1a8l_A           21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TD-KLSYEIVDFDTPEGKELAKRYRIDR-APATTITQDGKDFGVRYFG   97 (226)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CT-TEEEEEEETTSHHHHHHHHHTTCCS-SSEEEEEETTBCCSEEEES
T ss_pred             CCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CC-ceEEEEEeCCCcccHHHHHHcCCCc-CceEEEEcCCceeeEEEec
Confidence            456778999999 999999999999999865 34 59999999999  999999999997 999999988864  45655


Q ss_pred             CcccHHHHHHHHHHhCCCC-ccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccC----CceEE
Q psy16770        221 PSFSVQKMVEFFRLKLPYK-LIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHR----TTIVF  290 (554)
Q Consensus       221 g~~~~~~i~~fl~~~~~~~-~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~----~~v~F  290 (554)
                      . ++.+.+.+|+...+... ....+++++++....   ...++.++.|....-++.+..     ..+..+.    +.+.|
T Consensus        98 ~-~~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~---~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~  173 (226)
T 1a8l_A           98 L-PAGHEFAAFLEDIVDVSREETNLMDETKQAIRN---IDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILG  173 (226)
T ss_dssp             C-CCTTHHHHHHHHHHHHHHTCCCCCHHHHHHHTT---CCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             c-CcHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHh---cCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEE
Confidence            4 56788999988754211 133456677766542   134443666644332222111     1122333    58999


Q ss_pred             EEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        291 GVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       291 g~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +.++++  .+.+++++|+|.+ .||+++|+++..   ...+.|..+...|.+||+.
T Consensus       174 ~~vd~~--~~~~l~~~~~v~~-~Pt~~~~~~G~~---~~~~~G~~~~~~l~~~l~~  223 (226)
T 1a8l_A          174 DMVEAI--EYPEWADQYNVMA-VPKIVIQVNGED---RVEFEGAYPEKMFLEKLLS  223 (226)
T ss_dssp             EEEEGG--GCHHHHHHTTCCS-SCEEEEEETTEE---EEEEESCCCHHHHHHHHHH
T ss_pred             EEEEcc--cCHHHHHhCCCcc-cCeEEEEeCCce---eEEEcCCCCHHHHHHHHHH
Confidence            999987  6889999999997 999999986432   1356777888888888864

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.77  E-value=9.4e-19  Score=153.10  Aligned_cols=105  Identities=12%  Similarity=0.142  Sum_probs=91.4

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhC----CCCEEEEEEEecCcHHHHHHhCCcC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS----PLGVGFFTVHVHNEQGLARRLGVGS  202 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~----~~~v~~~~Vd~~~~~~l~~~~~v~~  202 (554)
                      ..+.+||.++|++.+.  +.+++++|.|||+||++|+++.|.|+++++.+.    ..++.+++|||++++++|++|+|.+
T Consensus        15 ~~v~~l~~~~f~~~~~--~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~   92 (127)
T 3h79_A           15 SRVVELTDETFDSIVM--DPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSG   92 (127)
T ss_dssp             CCCEECCTTTHHHHHT--CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCS
T ss_pred             CceEECChhhHHHHHh--CCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCcc
Confidence            4688999999999986  357899999999999999999999999998763    2259999999999999999999997


Q ss_pred             CCCcceeccCCeE---EEEeCCcccHHHHHHHHHHh
Q psy16770        203 QLPQIALLTDGRT---SFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       203 ~~Pti~~~~~g~~---~~y~~g~~~~~~i~~fl~~~  235 (554)
                       +||+++|++|..   ..|.|+ ++.+.|.+|+.+.
T Consensus        93 -~Pt~~~~~~g~~~~~~~~~G~-~~~~~l~~~i~~~  126 (127)
T 3h79_A           93 -FPTMRYYTRIDKQEPFEYSGQ-RYLSLVDSFVFQN  126 (127)
T ss_dssp             -SSEEEEECSSCSSSCEECCSC-CCHHHHHHHHHHH
T ss_pred             -CCEEEEEeCCCCCCceEecCC-ccHHHHHHHHHhc
Confidence             999999988764   456554 6999999999875

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=6.5e-19  Score=146.90  Aligned_cols=71  Identities=34%  Similarity=0.563  Sum_probs=66.1

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770         16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTT   86 (554)
Q Consensus        16 ~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~   86 (554)
                      ....|||+||||++.++.++||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||.....
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   85 (99)
T 2yua_A           14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS   85 (99)
T ss_dssp             SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred             CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence            45689999999999999999999999999999999996 577899999999999999999999999996654

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.76  E-value=8.2e-18  Score=162.55  Aligned_cols=183  Identities=12%  Similarity=0.108  Sum_probs=134.9

Q ss_pred             CCcEEEEEE-----cccccccccchHHHHHHHHHh--CCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeE-EEE
Q psy16770        147 TTPHLILFY-----SDWCFACLQVEPIFKKLMDEL--SPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRT-SFF  218 (554)
Q Consensus       147 ~~~~lV~Fy-----a~wC~~C~~l~p~~~~~a~~l--~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~-~~y  218 (554)
                      ..+++|.||     +|||+||+.+.|+|+++++.+  .+ .+.+++|||+.++++|++|||++ +||+++|++|.. ..|
T Consensus        20 ~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~-~Ptl~~~~~~~~~~~~   97 (229)
T 2ywm_A           20 KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQD-KIKLDIYSPFTHKEETEKYGVDR-VPTIVIEGDKDYGIRY   97 (229)
T ss_dssp             CSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTT-TEEEEEECTTTCHHHHHHTTCCB-SSEEEEESSSCCCEEE
T ss_pred             cCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCC-ceEEEEecCcccHHHHHHcCCCc-CcEEEEECCCccccee
Confidence            346666666     899999999999999999888  44 59999999999999999999997 999999987654 556


Q ss_pred             eCCcccHHHHHHHHHHhCC--CCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEE
Q psy16770        219 KEPSFSVQKMVEFFRLKLP--YKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFG  291 (554)
Q Consensus       219 ~~g~~~~~~i~~fl~~~~~--~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg  291 (554)
                      .|. ++.+++.+|+...+.  .. +..+++++++....   ....+.++.|....-+......     .+..+ +.+.|+
T Consensus        98 ~G~-~~~~~l~~~~~~~~~~~~~-~~~l~~~~~~~~~~---~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~-~~v~~~  171 (229)
T 2ywm_A           98 IGL-PAGLEFTTLINGIFHVSQR-KPQLSEKTLELLQV---VDIPIEIWVFVTTSCGYCPSAAVMAWDFALAN-DYITSK  171 (229)
T ss_dssp             ESC-CCTTHHHHHHHHHHHHHTT-CCSCCHHHHHHHTT---CCSCEEEEEEECTTCTTHHHHHHHHHHHHHHC-TTEEEE
T ss_pred             cCC-ccHHHHHHHHHHHHhccCC-ccCCCHHHHHHHHh---cCCCeEEEEEECCCCcchHHHHHHHHHHHHHC-CCeEEE
Confidence            655 577999999987643  22 45667788877663   2344445555443323222111     12233 689999


Q ss_pred             EEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        292 VIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       292 ~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      .++++  .+.+++++|+|.+ .|++++  ++ . .  ..+.|..+...|.+|++.
T Consensus       172 ~vd~~--~~~~l~~~~~v~~-~Pt~~~--~G-~-~--~~~~G~~~~~~l~~~l~~  217 (229)
T 2ywm_A          172 VIDAS--ENQDLAEQFQVVG-VPKIVI--NK-G-V--AEFVGAQPENAFLGYIMA  217 (229)
T ss_dssp             EEEGG--GCHHHHHHTTCCS-SSEEEE--GG-G-T--EEEESCCCHHHHHHHHHH
T ss_pred             EEECC--CCHHHHHHcCCcc-cCEEEE--CC-E-E--EEeeCCCCHHHHHHHHHH
Confidence            99987  6889999999997 999998  22 2 2  336778888888888864

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.75  E-value=5.5e-19  Score=146.20  Aligned_cols=71  Identities=30%  Similarity=0.666  Sum_probs=65.3

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770         16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-------PTAQEKFLQLTEAYNILSDAERRKQYDLFGTT   86 (554)
Q Consensus        16 ~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~-------~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~   86 (554)
                      ....|||+||||+++++.++||+|||+|+++||||+++.       +.+.++|++|++||++|+||.+|+.||.....
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   90 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence            346899999999999999999999999999999999863       56889999999999999999999999998754

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.75  E-value=1.1e-18  Score=148.09  Aligned_cols=73  Identities=36%  Similarity=0.718  Sum_probs=67.8

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         15 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        15 ~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      +....|||+||||+++|+.++||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||.+|..+
T Consensus        13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   86 (109)
T 2ctw_A           13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLG   86 (109)
T ss_dssp             TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccc
Confidence            456789999999999999999999999999999999997 4778999999999999999999999999988653

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=6e-19  Score=150.52  Aligned_cols=72  Identities=33%  Similarity=0.547  Sum_probs=67.3

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        16 ~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ....|||+||||+++|+.++||+|||+|+++||||+++ ++.+.++|++|++||++|+||.+|+.||.+|..+
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~   89 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQ   89 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHT
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhc
Confidence            45689999999999999999999999999999999997 5789999999999999999999999999988654

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.75  E-value=5.7e-19  Score=146.81  Aligned_cols=69  Identities=46%  Similarity=0.854  Sum_probs=64.0

Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         19 LDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND--PTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        19 ~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~--~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      .|||+||||+++++.++||+|||+|+++||||+++.  +.+.++|++|++||++|+||.+|+.||.+|..+
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~   72 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREG   72 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            589999999999999999999999999999999975  357899999999999999999999999998765

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.74  E-value=1.6e-17  Score=171.87  Aligned_cols=210  Identities=15%  Similarity=0.151  Sum_probs=156.1

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec--CcHHHHHHhCCcC-C
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH--NEQGLARRLGVGS-Q  203 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~--~~~~l~~~~~v~~-~  203 (554)
                      ..+.++|.++|...+.  +..++++|.||++||++|+++.|.|+++|+.+++. +.|+.|||+  .++.+|+.|||++ .
T Consensus       117 p~v~~~~~~~~~~~~~--~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~-i~f~~vd~~~~~~~~~~~~fgi~~~~  193 (361)
T 3uem_A          117 PLVIEFTEQTAPKIFG--GEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK-ILFIFIDSDHTDNQRILEFFGLKKEE  193 (361)
T ss_dssp             CSEEECSTTTHHHHHS--CSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT-CEEEEECTTSGGGHHHHHHTTCCTTT
T ss_pred             CcceecCcccHHHHhc--CCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCc-eEEEEecCChHHHHHHHHHcCCCccC
Confidence            4577889999988764  33457899999999999999999999999999984 999999999  6899999999972 3


Q ss_pred             CCcceeccCCe-EEEEe--CCcccHHHHHHHHHHhCCC-----------------CccccCCcccHHHHHhhhhcCCceE
Q psy16770        204 LPQIALLTDGR-TSFFK--EPSFSVQKMVEFFRLKLPY-----------------KLIVPLSATNVDAFLDNWREDNKVH  263 (554)
Q Consensus       204 ~Pti~~~~~g~-~~~y~--~g~~~~~~i~~fl~~~~~~-----------------~~v~~~t~~~~~~fl~~~~~~~~~~  263 (554)
                      +|+++++..|. ...|.  ++..+.+.|.+|+.+.+..                 ..+..++.+++++++.   ..++++
T Consensus       194 ~P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~~~---~~~k~~  270 (361)
T 3uem_A          194 CPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAF---DEKKNV  270 (361)
T ss_dssp             CSEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEECTTTHHHHHT---CTTCEE
T ss_pred             CccEEEEEcCCcccccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcccccCCcEEeecCchhhhcc---cCCCcE
Confidence            99999997754 34454  3567999999999986421                 1245567788888774   246677


Q ss_pred             EEEEecCCc-------hhHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCC
Q psy16770        264 ALLFQRSLP-------VRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIP  336 (554)
Q Consensus       264 v~~f~~~~~-------~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~  336 (554)
                      ++.|...--       +.+...+........+.|+.++++.  +.  +++|+|.+ +||+++|+.+.... ...+.|..+
T Consensus       271 lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~--~~--~~~~~v~~-~Pt~~~~~~~~~~~-~~~~~G~~~  344 (361)
T 3uem_A          271 FVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTA--NE--VEAVKVHS-FPTLKFFPASADRT-VIDYNGERT  344 (361)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTT--CB--CSSCCCCS-SSEEEEECSSSSCC-CEECCSCSS
T ss_pred             EEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCc--cc--hhhcCCcc-cCeEEEEECCCCcc-eeEecCCCC
Confidence            777643322       2233333333323459999999863  22  78999997 99999997653322 245778899


Q ss_pred             hhHHHhHHhcCC
Q psy16770        337 VPTLQDITDNNP  348 (554)
Q Consensus       337 ~~~l~~fi~~~~  348 (554)
                      .+.|.+||+.+.
T Consensus       345 ~~~l~~~l~~~~  356 (361)
T 3uem_A          345 LDGFKKFLESGG  356 (361)
T ss_dssp             HHHHHHHHTTTS
T ss_pred             HHHHHHHHHhcC
Confidence            999999999874

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.74  E-value=1.9e-18  Score=151.49  Aligned_cols=103  Identities=15%  Similarity=0.135  Sum_probs=94.2

Q ss_pred             cccccccccccccCCCCCCcEEEEEEcccc--cccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        130 LSTTHWNFEKNYIPKSYTTPHLILFYSDWC--FACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       130 ~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC--~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      ..+|.++|++.|.  +++++++|.|||+||  ++|+.+.|.++++++++.+ ++++++||.+++++++.+|||++ +||+
T Consensus        18 ~~vt~~~F~~~v~--~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~-~v~~~KVdvDe~~~la~~ygV~s-iPTl   93 (137)
T 2qsi_A           18 TLVDEATVDDFIA--HSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPG-RLVAAEVAAEAERGLMARFGVAV-CPSL   93 (137)
T ss_dssp             EEECTTTHHHHHH--TSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTT-TEEEEEECGGGHHHHHHHHTCCS-SSEE
T ss_pred             cccCHhHHHHHHh--cCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccC-CcEEEEEECCCCHHHHHHcCCcc-CCEE
Confidence            3789999999985  344599999999999  9999999999999999987 59999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++|++|+.+....|..+.+.|.+++.+.+
T Consensus        94 ilFkdG~~v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           94 AVVQPERTLGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             EEEECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            99999999988888888899999998765

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.74  E-value=5.9e-19  Score=145.10  Aligned_cols=69  Identities=36%  Similarity=0.718  Sum_probs=63.7

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ...|||+||||+++++.++||+|||+|+++||||+++.  +.++|++|++||++|+||.+|+.||.+|..+
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   74 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG--DTEKFKEISEAFEILNDPQKREIYDQYGLEA   74 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTC--CHHHHHHHHHHHHHHTSHHHHHHHHHHCHHH
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHCCHHHHHHHHHHCHHH
Confidence            46799999999999999999999999999999999854  3579999999999999999999999998764

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.73  E-value=6.2e-18  Score=144.42  Aligned_cols=105  Identities=20%  Similarity=0.309  Sum_probs=95.5

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      +++||.++|++.+    .+++++|.||++||++|+.+.|.++++++.+++ ++.++.||++.++++|++|+|.+ +||++
T Consensus         3 v~~l~~~~~~~~~----~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~-~Pt~~   76 (112)
T 2voc_A            3 IVKATDQSFSAET----SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDENQETAGKYGVMS-IPTLL   76 (112)
T ss_dssp             CEECCTTTHHHHH----SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTTCCSHHHHTTCCS-BSEEE
T ss_pred             eEEecHHHHHHHh----CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCCCHHHHHHcCCCc-ccEEE
Confidence            5678999999988    467999999999999999999999999999986 59999999999999999999997 99999


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      +|++|+.+....|..+.+.|.+|+.+.+++.
T Consensus        77 ~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  107 (112)
T 2voc_A           77 VLKDGEVVETSVGFKPKEALQELVNKHLLEH  107 (112)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHTTSCSC
T ss_pred             EEeCCEEEEEEeCCCCHHHHHHHHHHHHHhh
Confidence            9999998766666678999999999998765

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.73  E-value=4.8e-18  Score=144.26  Aligned_cols=105  Identities=21%  Similarity=0.332  Sum_probs=94.8

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+.++|.++|++.+.  ..+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||++.++.+|++|+|.+ +||+
T Consensus         5 ~v~~l~~~~~~~~~~--~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~-~Pt~   80 (111)
T 3gnj_A            5 SLEKLDTNTFEQLIY--DEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEEEKTLFQRFSLKG-VPQI   80 (111)
T ss_dssp             CSEECCHHHHHHHHT--TSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTCHHHHHHTTCCS-SCEE
T ss_pred             cceecCHHHHHHHHH--hcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCcChhHHHhcCCCc-CCEE
Confidence            477899999999985  3568999999999999999999999999999986 49999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++|++|+.+....|..+.+.|.+|+.+.+
T Consensus        81 ~~~~~g~~~~~~~g~~~~~~l~~~l~~~l  109 (111)
T 3gnj_A           81 LYFKDGEYKGKMAGDVEDDEVEQMIADVL  109 (111)
T ss_dssp             EEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeccCCHHHHHHHHHHHh
Confidence            99999998766666678899999998765

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.73  E-value=7.8e-18  Score=142.30  Aligned_cols=106  Identities=21%  Similarity=0.459  Sum_probs=94.6

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      +.+..+|.++|+..+.  +.+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||++.++.++++|+|.+ +||
T Consensus         2 ~~v~~l~~~~f~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~-~Pt   77 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRG-IPT   77 (108)
T ss_dssp             TTEEECCTTTHHHHTT--TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCTTHHHHTTCCS-SSE
T ss_pred             CcceecchhhHHHHHH--hcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCCCHHHHHHcCCcc-cCE
Confidence            3578899999998775  4678999999999999999999999999999976 49999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +++|++|+.+....|..+.+.|.+|+.+.+
T Consensus        78 ~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           78 LLLFKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEeCCEEEEEEecCCCHHHHHHHHHHhh
Confidence            999999998776666678899999998764

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.73  E-value=7.4e-18  Score=142.98  Aligned_cols=104  Identities=21%  Similarity=0.384  Sum_probs=93.6

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCcHHHHHHhCCcCCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNEQGLARRLGVGSQL  204 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~~~l~~~~~v~~~~  204 (554)
                      ..+..||.++|++.+.    +++++|.||++||++|+.+.|.++++++.+...  ++.++.||++.++.+|++|+|.+ +
T Consensus         5 ~~v~~l~~~~~~~~~~----~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~-~   79 (111)
T 3uvt_A            5 STVLALTENNFDDTIA----EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRG-Y   79 (111)
T ss_dssp             CCSEECCTTTHHHHHH----SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCS-S
T ss_pred             CcceEcChhhHHHHhc----CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCc-c
Confidence            4588999999999984    679999999999999999999999999987632  69999999999999999999997 9


Q ss_pred             CcceeccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        205 PQIALLTDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       205 Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      ||+++|++|+.+..+.|..+.+.|.+|+.++
T Consensus        80 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           80 PTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             SEEEEEETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             cEEEEEeCCcEEEeccCCcCHHHHHHHHHhc
Confidence            9999999999877766777999999999875

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.73  E-value=1.9e-18  Score=151.94  Aligned_cols=106  Identities=10%  Similarity=0.093  Sum_probs=95.8

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEccc--ccccccchHHHHHHHHHhCCCC-EEEEEEEecCcHHHHHHhCCcCCC
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDW--CFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGLARRLGVGSQL  204 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~w--C~~C~~l~p~~~~~a~~l~~~~-v~~~~Vd~~~~~~l~~~~~v~~~~  204 (554)
                      ....+|.++|++.|.   +++++||.|||+|  |++|+.++|.++++++++.+ . ++|++||.+++++++.+|||++ +
T Consensus        18 g~~~~t~~~F~~~v~---~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g-~~v~~~KVdvDe~~~lA~~ygV~s-I   92 (140)
T 2qgv_A           18 GWTPVSESRLDDWLT---QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPD-YTWQVAIADLEQSEAIGDRFGAFR-F   92 (140)
T ss_dssp             TCEECCHHHHHHHHH---TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTT-SCCEEEECCHHHHHHHHHHHTCCS-S
T ss_pred             CCccCCHHHHHHHHh---CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCC-CeEEEEEEECCCCHHHHHHcCCcc-C
Confidence            345789999999993   6679999999999  99999999999999999976 5 9999999999999999999997 9


Q ss_pred             CcceeccCCeEEEEeCCcccHHHHHHHHHHhCCC
Q psy16770        205 PQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       205 Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~  238 (554)
                      ||+++|++|+.+....|..+.+.|.+++.+.+..
T Consensus        93 PTlilFk~G~~v~~~~G~~~k~~l~~~i~~~l~~  126 (140)
T 2qgv_A           93 PATLVFTGGNYRGVLNGIHPWAELINLMRGLVEP  126 (140)
T ss_dssp             SEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             CEEEEEECCEEEEEEecCCCHHHHHHHHHHHhcC
Confidence            9999999999998888888889999999887643

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.72  E-value=2.4e-18  Score=146.22  Aligned_cols=70  Identities=30%  Similarity=0.505  Sum_probs=65.7

Q ss_pred             CCCCCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC----hhHHHHHHHHHHHHHHcCChHHHHhhhccCC
Q psy16770         16 AVSLDPYETLGVPRTA-SLQEIRKNYKRLVVEWHPDKNND----PTAQEKFLQLTEAYNILSDAERRKQYDLFGT   85 (554)
Q Consensus        16 ~~~~d~y~~Lgv~~~a-~~~~ik~ay~~l~~~~hPd~~~~----~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~   85 (554)
                      ....|||+||||+++| +.++||+|||+|+++||||++++    +.+.++|++|++||++|+||.+|+.||.+|.
T Consensus        12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~   86 (109)
T 2qsa_A           12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD   86 (109)
T ss_dssp             TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            4578999999999999 99999999999999999999976    5688999999999999999999999999875

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.72  E-value=2e-17  Score=139.37  Aligned_cols=104  Identities=18%  Similarity=0.396  Sum_probs=93.7

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+.+++.++|+..+.  +.+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||++.++.++++|+|.+ +||+
T Consensus         3 ~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~-~Pt~   78 (107)
T 2i4a_A            3 HTLAVSDSSFDQDVL--KASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDDNPETPNAYQVRS-IPTL   78 (107)
T ss_dssp             CEEECCTTTHHHHTT--TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTTCCHHHHHTTCCS-SSEE
T ss_pred             ceeecchhhhhHHHH--hCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCCCHHHHHhcCCCc-cCEE
Confidence            578899999998774  4678999999999999999999999999999986 59999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      ++|++|+.+....|..+.+.|.+|+.+.
T Consensus        79 ~~~~~G~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           79 MLVRDGKVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHT
T ss_pred             EEEeCCEEEEEecCCCCHHHHHHHHHhc
Confidence            9999999877665667889999999875

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.71  E-value=1.3e-17  Score=140.68  Aligned_cols=98  Identities=14%  Similarity=0.167  Sum_probs=78.0

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD  212 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~  212 (554)
                      |.++|++.+   +.+++++|.|||+||++|+.+.|.++++++.+.  ++.++.||++.++.++++|+|.+ +||+++|++
T Consensus         7 ~~~~~~~~~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~   80 (105)
T 4euy_A            7 TIEELATYI---EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILLQDMQEIAGRYAVFT-GPTVLLFYN   80 (105)
T ss_dssp             ---CCSSST---TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEECCC---------CC-CCEEEEEET
T ss_pred             CHHHHHHHH---hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC--CceEEEEECCCCHHHHHhcCCCC-CCEEEEEeC
Confidence            567888888   467899999999999999999999999999984  59999999999999999999997 999999999


Q ss_pred             CeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        213 GRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       213 g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      |+.+....|..+.+.|.+++.+.+
T Consensus        81 G~~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           81 GKEILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             TEEEEEEESSCCHHHHHHHHHTTC
T ss_pred             CeEEEEEeCCcCHHHHHHHHHHhh
Confidence            998877767779999999998764

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.5e-17  Score=146.07  Aligned_cols=107  Identities=21%  Similarity=0.341  Sum_probs=94.9

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhC----CCCEEEEEEEecCcHHHHHHhCCcC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS----PLGVGFFTVHVHNEQGLARRLGVGS  202 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~----~~~v~~~~Vd~~~~~~l~~~~~v~~  202 (554)
                      ..+..|+.++|++.+.  ..+++++|.||++||++|+.+.|.|+++++.++    + ++.++.|||+.++.+|++|+|.+
T Consensus         7 ~~v~~l~~~~~~~~~~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~   83 (133)
T 1x5d_A            7 GDVIELTDDSFDKNVL--DSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKG-KVKLAAVDATVNQVLASRYGIRG   83 (133)
T ss_dssp             CSCEECCTTHHHHHTT--TSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTT-SEEEEEEETTTCCHHHHHHTCCS
T ss_pred             CcCEEcCHhhHHHHHh--cCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCC-cEEEEEEECCCCHHHHHhCCCCe
Confidence            3578899999999875  356899999999999999999999999999986    4 59999999999999999999997


Q ss_pred             CCCcceeccCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        203 QLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       203 ~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                       +||+++|.+|+.+..+.|.++.+.|.+|+.+.+.
T Consensus        84 -~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~  117 (133)
T 1x5d_A           84 -FPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFS  117 (133)
T ss_dssp             -SSEEEEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred             -eCeEEEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence             9999999889876666666789999999987753

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.71  E-value=2.4e-17  Score=138.62  Aligned_cols=103  Identities=17%  Similarity=0.299  Sum_probs=93.3

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+.++|.++|++.+    .+++++|.||++||++|+.+.|.++++++.+.+. +.++.||++.++.++++|+|.+ +||+
T Consensus         4 ~v~~l~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~-~Pt~   77 (106)
T 3die_A            4 AIVKVTDADFDSKV----ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK-ADILKLDVDENPSTAAKYEVMS-IPTL   77 (106)
T ss_dssp             CCEECCTTTHHHHS----CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTTCHHHHHHTTCCS-BSEE
T ss_pred             ceEECCHHHHHHHh----cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEECCcCHHHHHhCCCcc-cCEE
Confidence            46788999999988    5679999999999999999999999999999864 9999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +++++|+.+....|..+.++|.+++.+.+
T Consensus        78 ~~~~~G~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 3die_A           78 IVFKDGQPVDKVVGFQPKENLAEVLDKHL  106 (106)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             EEEeCCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            99999998776667778899999998753

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.70  E-value=2.2e-17  Score=142.70  Aligned_cols=107  Identities=16%  Similarity=0.257  Sum_probs=95.1

Q ss_pred             cccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770        126 LFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLP  205 (554)
Q Consensus       126 ~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~P  205 (554)
                      +..+..+|.++|++.+.  ..+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||++.+..++++|+|.+ +|
T Consensus        12 ~~~~~~~~~~~f~~~v~--~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~-~P   87 (119)
T 1w4v_A           12 STTFNIQDGPDFQDRVV--NSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDIDDHTDLAIEYEVSA-VP   87 (119)
T ss_dssp             CSEEECCSHHHHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEETTTTHHHHHHTTCCS-SS
T ss_pred             ceEEEecChhhHHHHHH--cCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCCHHHHHHcCCCc-cc
Confidence            34688899999999886  3577999999999999999999999999999976 59999999999999999999997 99


Q ss_pred             cceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        206 QIALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       206 ti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      |+++|++|+.+....|..+.+.|.+|+.+.+
T Consensus        88 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           88 TVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence            9999999998766656668899999998764

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=5.4e-18  Score=138.57  Aligned_cols=63  Identities=32%  Similarity=0.467  Sum_probs=60.1

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHh
Q psy16770         17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ   79 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~   79 (554)
                      ...|||+||||+++++.++||+|||+|+++||||+++++++.++|++|++||++|+|+.+|+.
T Consensus        25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence            458999999999999999999999999999999999988999999999999999999998865

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.70  E-value=1.6e-17  Score=142.97  Aligned_cols=104  Identities=19%  Similarity=0.270  Sum_probs=91.8

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .....|.++|++.+.. ..+++++|.||++||++|+.+.|.++++++.+.+  +.|+.||+++++.++++|+|.+ +||+
T Consensus        13 ~~~~~t~~~f~~~l~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d~~~~l~~~~~v~~-~Pt~   88 (116)
T 3qfa_C           13 VKQIESKTAFQEALDA-AGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVDDCQDVASECEVKS-MPTF   88 (116)
T ss_dssp             CBCCCCHHHHHHHHHH-HTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETTTTHHHHHHTTCCS-SSEE
T ss_pred             ccCCCCHHHHHHHHHh-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHcCCcc-ccEE
Confidence            3556788999998742 1678999999999999999999999999999875  8999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++|++|+.+....|. +.+.|.+++.+.+
T Consensus        89 ~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           89 QFFKKGQKVGEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             EEESSSSEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEeCCeEEEEEcCC-CHHHHHHHHHHhC
Confidence            999999987777676 8899999998764

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.70  E-value=2e-17  Score=139.64  Aligned_cols=104  Identities=20%  Similarity=0.314  Sum_probs=94.5

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+..+|.++|+..+.   .+++++|.||++||++|+.+.|.++++++.+.+ .+.++.||++.++.++++|+|.+ +||+
T Consensus         5 ~v~~l~~~~~~~~~~---~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~i~~-~Pt~   79 (109)
T 3tco_A            5 VTLVLTEENFDEVIR---NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVDENQKIADKYSVLN-IPTT   79 (109)
T ss_dssp             CCEECCTTTHHHHHH---HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTCHHHHHHTTCCS-SSEE
T ss_pred             eEEEecHHHHHHHHh---cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC-CceEEEEccccCHHHHHhcCccc-CCEE
Confidence            477899999999883   578999999999999999999999999999986 49999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++|++|+.+....|..+.+.|.+++.+.+
T Consensus        80 ~~~~~g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           80 LIFVNGQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEEcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence            99999998776667678899999998765

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.70  E-value=3.7e-17  Score=139.54  Aligned_cols=107  Identities=18%  Similarity=0.369  Sum_probs=95.4

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      ..+.+++.++|+..+.  ..+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||++.++.+|++|+|.+ +||
T Consensus         7 ~~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~-~Pt   82 (115)
T 1thx_A            7 KGVITITDAEFESEVL--KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDPNPTTVKKYKVEG-VPA   82 (115)
T ss_dssp             CSEEECCGGGHHHHTT--TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTTCHHHHHHTTCCS-SSE
T ss_pred             CceEEeeccchhhHhh--cCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCC-cEEEEEEEcCCCHHHHHHcCCCc-eeE
Confidence            3578899999998875  4678999999999999999999999999999986 49999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      +++|++|+.+....|..+.+.|.+|+.+.++
T Consensus        83 ~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           83 LRLVKGEQILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEcCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence            9999999987765566788999999988764

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.70  E-value=1.9e-17  Score=146.98  Aligned_cols=108  Identities=20%  Similarity=0.318  Sum_probs=95.5

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCcHHHHHHhCCcCCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNEQGLARRLGVGSQL  204 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~~~l~~~~~v~~~~  204 (554)
                      ..+..|+.++|+..+.   .+++++|+||++||++|+.+.|.|+++++.+.+.  ++.++.|||+.+..+|++|+|.+ +
T Consensus        17 ~~v~~l~~~~~~~~~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~-~   92 (140)
T 2dj1_A           17 NGVWVLNDGNFDNFVA---DKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSG-Y   92 (140)
T ss_dssp             TTEEECCTTTHHHHHT---TCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCS-S
T ss_pred             CCCEEcChHhHHHHHh---cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCc-c
Confidence            4578899999999883   5789999999999999999999999999998753  39999999999999999999997 9


Q ss_pred             CcceeccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        205 PQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       205 Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      ||+++|++|+...+. |.++.+.|.+|+.+.+.++
T Consensus        93 Pt~~~~~~G~~~~~~-g~~~~~~l~~~l~~~~~~~  126 (140)
T 2dj1_A           93 PTIKILKKGQAVDYD-GSRTQEEIVAKVREVSQPD  126 (140)
T ss_dssp             SEEEEEETTEEEECC-SCCCHHHHHHHHHHHHSSS
T ss_pred             CeEEEEECCcEEEcC-CCCCHHHHHHHHHHhcCCC
Confidence            999999999955444 5568899999999988765

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.70  E-value=2.9e-17  Score=139.81  Aligned_cols=106  Identities=19%  Similarity=0.365  Sum_probs=94.0

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+..+|.++|++.+.  +.+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||++.++.++++|+|.+ +||+
T Consensus         6 ~v~~l~~~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~-~Pt~   81 (112)
T 1t00_A            6 TLKHVTDDSFEQDVL--KNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDENPGTAAKYGVMS-IPTL   81 (112)
T ss_dssp             CCEEECTTTHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCS-SSEE
T ss_pred             eEEecchhhHHHHHh--hCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC-CeEEEEEEcCCCHHHHHhCCCCc-ccEE
Confidence            367899999988776  4578999999999999999999999999999976 49999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      +++++|+.+....|..+.+.|.+++.+.++
T Consensus        82 ~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           82 NVYQGGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             EEEeCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence            999999987666666788999999987653

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.70  E-value=2.6e-17  Score=138.27  Aligned_cols=103  Identities=18%  Similarity=0.355  Sum_probs=90.8

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      +++||.++|+..+   ..+++++|.||++||++|+.+.|.++++++.+.+ .+.++.||++.++.++++|+|.+ +||++
T Consensus         2 v~~l~~~~~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~-~Pt~~   76 (105)
T 1nsw_A            2 TMTLTDANFQQAI---QGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDENPETTSQFGIMS-IPTLI   76 (105)
T ss_dssp             CEEECTTTHHHHH---SSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-TCEEEEEETTTCHHHHHHTTCCS-SSEEE
T ss_pred             ceeccHHhHHHHH---hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECcCCHHHHHHcCCcc-ccEEE
Confidence            5678999999665   4568999999999999999999999999999976 49999999999999999999997 99999


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++++|+.+....|..+.+.|.+++.+.+
T Consensus        77 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           77 LFKGGRPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHTTTTT
T ss_pred             EEeCCeEEEEEecCCCHHHHHHHHHHHh
Confidence            9999998766656678899999887654

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.70  E-value=4e-17  Score=137.65  Aligned_cols=104  Identities=16%  Similarity=0.351  Sum_probs=92.8

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      +..+|.++|++.+.  ..+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||++.++.++++|+|.+ +||++
T Consensus         3 v~~l~~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~-~Pt~~   78 (107)
T 1dby_A            3 AGAVNDDTFKNVVL--ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDESPNVASEYGIRS-IPTIM   78 (107)
T ss_dssp             CEEECHHHHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHHTCCS-SCEEE
T ss_pred             cEeccHHHHHHHHh--cCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCCc-CCEEE
Confidence            56789999998775  3578999999999999999999999999999976 49999999999999999999997 99999


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++++|+.+....|..+.+.+.+++.+.+
T Consensus        79 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           79 VFKGGKKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             EESSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            9999998766656678899999998765

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.70  E-value=4.1e-17  Score=142.92  Aligned_cols=105  Identities=23%  Similarity=0.360  Sum_probs=91.5

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+..||.++|+..+.  ..+++++|.||++||++|+.+.|.++++++.+++. +.++.||++.+..+|++|+|.+ +||+
T Consensus        18 ~v~~l~~~~f~~~~~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~l~~~~~v~~-~Pt~   93 (130)
T 2dml_A           18 DVIELTPSNFNREVI--QSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV-VKVGAVNADKHQSLGGQYGVQG-FPTI   93 (130)
T ss_dssp             SSEECCTTTHHHHTT--TCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT-SEEEEEETTTCHHHHHHHTCCS-SSEE
T ss_pred             CcEECCHHHHHHHHh--cCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc-eEEEEEeCCCCHHHHHHcCCCc-cCEE
Confidence            578899999999775  45789999999999999999999999999999863 9999999999999999999997 9999


Q ss_pred             eeccCCeE-EEEeCCcccHHHHHHHHHHhC
Q psy16770        208 ALLTDGRT-SFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       208 ~~~~~g~~-~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++|.+|.. ...+.|.++.+.|.+|+.+.+
T Consensus        94 ~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l  123 (130)
T 2dml_A           94 KIFGANKNKPEDYQGGRTGEAIVDAALSAL  123 (130)
T ss_dssp             EEESSCTTSCEECCSCCSHHHHHHHHHHHH
T ss_pred             EEEeCCCCeEEEeecCCCHHHHHHHHHHHH
Confidence            99977653 444445568899999998765

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.69  E-value=3.7e-17  Score=163.55  Aligned_cols=111  Identities=21%  Similarity=0.339  Sum_probs=99.2

Q ss_pred             cccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770        126 LFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLP  205 (554)
Q Consensus       126 ~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~P  205 (554)
                      ...++++|.++|++.+ ..+.+++++|.||++||++|+.+.|.|+++++++.+ ++.|++|||+.++.+|++|+|.+ +|
T Consensus         6 ~~~v~~~~~~~f~~~~-~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~-~P   82 (287)
T 3qou_A            6 VENIVNINESNLQQVL-EQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG-QFILAKLDCDAEQMIAAQFGLRA-IP   82 (287)
T ss_dssp             CTTEEECCTTTHHHHH-TTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTTCHHHHHTTTCCS-SS
T ss_pred             CCccEECCHHHHHHHH-HhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCccCHHHHHHcCCCC-CC
Confidence            4468899999999966 334588999999999999999999999999999986 49999999999999999999998 99


Q ss_pred             cceeccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        206 QIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       206 ti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      |+++|++|+.+....|..+.+.+.+|+...+|..
T Consensus        83 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~lp~~  116 (287)
T 3qou_A           83 TVYLFQNGQPVDGFQGPQPEEAIRALLDXVLPRE  116 (287)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHSCCH
T ss_pred             eEEEEECCEEEEEeeCCCCHHHHHHHHHHHcCCc
Confidence            9999999998876667678899999999998654

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.69  E-value=2.2e-17  Score=147.01  Aligned_cols=108  Identities=18%  Similarity=0.293  Sum_probs=96.5

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      ..+.+||.++|.+.+.  ..+++++|.||++||++|+.+.|.|+++++.+.+ .+.++.||++.++.+|++|+|.+ +||
T Consensus         6 ~~v~~l~~~~f~~~~~--~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~-~Pt   81 (140)
T 3hz4_A            6 SSIIEFEDMTWSQQVE--DSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS-SAVFGRINIATNPWTAEKYGVQG-TPT   81 (140)
T ss_dssp             TTEEEECHHHHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTTCHHHHHHHTCCE-ESE
T ss_pred             cceEEcchHhHHHHHH--hCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCcCHhHHHHCCCCc-CCE
Confidence            3578899999996665  4578999999999999999999999999999987 49999999999999999999998 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhCCC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~  238 (554)
                      +++|++|+.+....|..+.+.|.+|+.+.++.
T Consensus        82 ~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~  113 (140)
T 3hz4_A           82 FKFFCHGRPVWEQVGQIYPSILKNAVRDMLQH  113 (140)
T ss_dssp             EEEEETTEEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred             EEEEeCCcEEEEEcCCCCHHHHHHHHHHHhcc
Confidence            99999999876666667889999999988753

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.69  E-value=2.1e-17  Score=144.87  Aligned_cols=106  Identities=20%  Similarity=0.425  Sum_probs=94.4

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      ..+.+||.++|++.+.  +.+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||++.+++++++|+|.+ +||
T Consensus        22 ~~v~~l~~~~f~~~~~--~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~-~Pt   97 (128)
T 2o8v_B           22 DKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPAKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRG-IPT   97 (128)
T ss_dssp             CCSEEECTTTHHHHTT--TCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT-TEEEEEEETTTCCTTSGGGTCCS-SSE
T ss_pred             cccEecChhhHHHHHH--hcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCc-cCE
Confidence            3478899999998775  4678999999999999999999999999999976 49999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +++|++|+.+....|..+.+.|.+|+.+.+
T Consensus        98 ~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B           98 LLLFKNGEVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEeCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence            999999998766656678899999998754

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.69  E-value=3.2e-17  Score=138.32  Aligned_cols=106  Identities=21%  Similarity=0.371  Sum_probs=93.2

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      ++.+||.++|+..+   +.+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||++.++.++++|+|.+ +||+
T Consensus         2 ~v~~l~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~-~Pt~   76 (109)
T 2yzu_A            2 KPIEVTDQNFDETL---GQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDENPKTAMRYRVMS-IPTV   76 (109)
T ss_dssp             CCEECCTTTHHHHH---HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTCHHHHHHTTCCS-SSEE
T ss_pred             cceEccHhHHHHHh---cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCCCHhHHHhCCCCc-CCEE
Confidence            46789999999666   4578999999999999999999999999999986 49999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhCCC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~  238 (554)
                      ++|++|+.+....|..+.+.|.+|+.+.++.
T Consensus        77 ~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~~  107 (109)
T 2yzu_A           77 ILFKDGQPVEVLVGAQPKRNYQAKIEKHLPA  107 (109)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHTTC--
T ss_pred             EEEeCCcEeeeEeCCCCHHHHHHHHHHHhhh
Confidence            9999999876555666889999999988764

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.69  E-value=1.4e-17  Score=143.17  Aligned_cols=109  Identities=22%  Similarity=0.378  Sum_probs=95.4

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC--CCEEEEEEEecCcHHHHHHhCCcCCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP--LGVGFFTVHVHNEQGLARRLGVGSQL  204 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~--~~v~~~~Vd~~~~~~l~~~~~v~~~~  204 (554)
                      ..+.++|.++|+..+   ..+++++|.||++||++|+.+.|.++++++.+++  ..+.++.||++.++.+|++|+|.+ +
T Consensus         7 ~~v~~l~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~-~   82 (120)
T 1mek_A            7 DHVLVLRKSNFAEAL---AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRG-Y   82 (120)
T ss_dssp             TTEEECCTTTHHHHH---HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCS-S
T ss_pred             CCcEEechhhHHHHH---ccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCc-c
Confidence            357889999999887   3578999999999999999999999999999874  358999999999999999999997 9


Q ss_pred             CcceeccCCeEE--EEeCCcccHHHHHHHHHHhCCCC
Q psy16770        205 PQIALLTDGRTS--FFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       205 Pti~~~~~g~~~--~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      ||+++|++|+.+  ..+.|..+.+.|.+|+.+.++++
T Consensus        83 Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~  119 (120)
T 1mek_A           83 PTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             SEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             cEEEEEeCCCcCCcccccCccCHHHHHHHHHhccCCC
Confidence            999999999764  44445668899999999988765

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.69  E-value=3.4e-17  Score=148.58  Aligned_cols=106  Identities=21%  Similarity=0.332  Sum_probs=95.4

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+++++.++|++.+   ..+++++|.||++||++|+.+.|.|+++++.+.+ ++.|++||+++++.++++|+|++ +||+
T Consensus        48 ~~~~l~~~~f~~~~---~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~~~l~~~~~i~~-~Pt~  122 (155)
T 2ppt_A           48 KVAGIDPAILARAE---RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQAHPAVAGRHRIQG-IPAF  122 (155)
T ss_dssp             SEEECCHHHHHHHT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTSTHHHHHTTCCS-SSEE
T ss_pred             CCccCCHHHHHHHH---hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccC-CEEEEEEeCCccHHHHHHcCCCc-CCEE
Confidence            46788999999988   4678999999999999999999999999999987 49999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhCCC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~  238 (554)
                      ++|++|+.+....|..+.+.|.+|+.+.++.
T Consensus       123 ~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~  153 (155)
T 2ppt_A          123 ILFHKGRELARAAGARPASELVGFVRGKLGA  153 (155)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEeCCeEEEEecCCCCHHHHHHHHHHHhcc
Confidence            9999999877666667889999999987654

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.68  E-value=7.8e-17  Score=135.17  Aligned_cols=104  Identities=14%  Similarity=0.376  Sum_probs=92.1

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      +..+|.++|+..+.  ..+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||++.++.+|++++|.+ +||++
T Consensus         2 v~~~~~~~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~-~Pt~~   77 (105)
T 1fb6_A            2 VQDVNDSSWKEFVL--ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDEAPGIATQYNIRS-IPTVL   77 (105)
T ss_dssp             CEECCTTTHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCS-SSEEE
T ss_pred             ceechhhhHHHHHh--cCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcC-ceEEEEEcCcchHHHHHhCCCCc-ccEEE
Confidence            46788999999775  3578999999999999999999999999999976 49999999999999999999997 99999


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++++|+......|..+.+.+.+++.+.+
T Consensus        78 ~~~~g~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           78 FFKNGERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             EEETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EEeCCeEEEEEecCCCHHHHHHHHHhhC
Confidence            9999998776656668899999998753

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.68  E-value=6.1e-17  Score=145.45  Aligned_cols=106  Identities=23%  Similarity=0.393  Sum_probs=97.1

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      ..+..++.++|+..+   ..+++++|+||++||++|+.+.|.|+++++.+.+ ++.++.||++.++.++++|+|.+ +||
T Consensus        38 ~~v~~l~~~~~~~~~---~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~-~Pt  112 (148)
T 3p2a_A           38 GEVINATAETLDKLL---QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEAEPALSTRFRIRS-IPT  112 (148)
T ss_dssp             CCCEECCTTTHHHHT---TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCS-SSE
T ss_pred             CCceecCHHHHHHHH---hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC-ceEEEEEECcCCHHHHHHCCCCc-cCE
Confidence            458889999999988   4678999999999999999999999999999976 49999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      +++|++|+.+..+.|..+.+.|.+|+.+.+.
T Consensus       113 ~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  143 (148)
T 3p2a_A          113 IMLYRNGKMIDMLNGAVPKAPFDNWLDEQLS  143 (148)
T ss_dssp             EEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred             EEEEECCeEEEEEeCCCCHHHHHHHHHHHhc
Confidence            9999999988877777899999999998764

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.68  E-value=6.5e-17  Score=143.19  Aligned_cols=109  Identities=24%  Similarity=0.426  Sum_probs=95.7

Q ss_pred             cccccccccccccccCCC---------CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHh
Q psy16770        128 HKLSTTHWNFEKNYIPKS---------YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL  198 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~---------~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~  198 (554)
                      .++.||.++|++.|...+         .+++++|.||++||++|+.+.|.++++++.+++ ++.++.||++.++.+|++|
T Consensus        10 ~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~   88 (136)
T 2l5l_A           10 KVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEKEQELAGAF   88 (136)
T ss_dssp             SEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHT
T ss_pred             ceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCCCHHHHHHc
Confidence            578899999999886421         468999999999999999999999999999976 4999999999999999999


Q ss_pred             CCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        199 GVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       199 ~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      +|.+ +||+++| ++|+.+.+.|+ .+.+.|.+|+.+.++..
T Consensus        89 ~v~~-~Pt~~~~~~~G~~~~~~G~-~~~~~l~~~l~~~~~~~  128 (136)
T 2l5l_A           89 GIRS-IPSILFIPMEGKPEMAQGA-MPKASFKKAIDEFLLKK  128 (136)
T ss_dssp             TCCS-SCEEEEECSSSCCEEEESC-CCHHHHHHHHHHHHTSC
T ss_pred             CCCC-CCEEEEECCCCcEEEEeCC-CCHHHHHHHHHHHhhcc
Confidence            9997 9999999 89988866655 58899999999886544

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.68  E-value=5.1e-17  Score=140.24  Aligned_cols=108  Identities=20%  Similarity=0.365  Sum_probs=95.2

Q ss_pred             cccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770        126 LFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLP  205 (554)
Q Consensus       126 ~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~P  205 (554)
                      ...+..++.++|...+.  ..+++++|.||++||++|+.+.|.++++++.+++ ++.++.||++.++.+|++++|.+ +|
T Consensus        11 ~~~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~i~~-~P   86 (121)
T 2i1u_A           11 KSATIKVTDASFATDVL--SSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDTNPETARNFQVVS-IP   86 (121)
T ss_dssp             -CCSEECCTTTHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCS-SS
T ss_pred             cccceecCHHHHHHHHH--hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCCHHHHHhcCCCc-CC
Confidence            34578899999998775  4578999999999999999999999999999976 49999999999999999999997 99


Q ss_pred             cceeccCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        206 QIALLTDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       206 ti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      |++++++|+.+....|..+.+.|.+++.+.++
T Consensus        87 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           87 TLILFKDGQPVKRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHTCSCCC
T ss_pred             EEEEEECCEEEEEecCCCCHHHHHHHHHHHHh
Confidence            99999999987666666788999999987765

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.68  E-value=3.9e-17  Score=136.44  Aligned_cols=103  Identities=22%  Similarity=0.411  Sum_probs=92.0

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      +.+||.++|++.+   ..+++++|.||++||++|+.+.|.++++++.+.+  +.++.||++.++.++++++|.+ +||++
T Consensus         1 V~~l~~~~~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~v~~-~Pt~~   74 (104)
T 2e0q_A            1 VIHLDSKNFDSFL---ASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDENPDIAARYGVMS-LPTVI   74 (104)
T ss_dssp             CEECCTTTHHHHH---HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTCHHHHHHTTCCS-SCEEE
T ss_pred             CeecCHHHHHHHH---hcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCCCHHHHHhCCccc-cCEEE
Confidence            4578999999988   3578999999999999999999999999999875  8999999999999999999997 99999


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      +|++|+.+....|..+.+.+.+|+.+.++
T Consensus        75 ~~~~g~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           75 FFKDGEPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EEECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence            99999987665566688999999988754

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.68  E-value=1.5e-15  Score=146.58  Aligned_cols=207  Identities=13%  Similarity=0.162  Sum_probs=148.8

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEE
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF  319 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvf  319 (554)
                      +.+.|.+++++|+..   +..++|.+|.+..++....+..++ .+ +++.||.+     .+++++++|+++  .|+|++|
T Consensus        12 ~~l~s~~~~~~~l~~---~~v~vVgff~~~~~~~~~~f~~~A~~l-~~~~F~~t-----~~~~v~~~~~v~--~p~i~lf   80 (227)
T 4f9z_D           12 TWLTDVPAAMEFIAA---TEVAVIGFFQDLEIPAVPILHSMVQKF-PGVSFGIS-----TDSEVLTHYNIT--GNTICLF   80 (227)
T ss_dssp             EECCSHHHHHHHHHT---SSEEEEEECSCSCSTHHHHHHHHTTTC-TTSEEEEE-----CCHHHHHHTTCC--SSEEEEE
T ss_pred             eeeCCHHHHHHHHhc---CCeEEEEEecCCCchhHHHHHHHHHhC-CCceEEEE-----CCHHHHHHcCCC--CCeEEEE
Confidence            455577899999853   344555566665666666666666 45 68999998     688999999997  4999999


Q ss_pred             eCCCCCCCceeec----CCCChhHHHhHHhcCCCcccccccchhhhhhcCCCCceEEEEEcC-CCCcchhHHHHHHHHHh
Q psy16770        320 KEDKDRPSASITM----NSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSE-DSPEHDASRHTLRRFAQ  394 (554)
Q Consensus       320 k~~~~~~~~~i~~----~~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~c~~~~lcvvl~~~-~~~~~~~~~~~l~~~a~  394 (554)
                      ++..+++.  .+.    ++++...|.+||+.+..|+++++|.++.....-...++++++|.. ...++++..+.++++|+
T Consensus        81 k~~~~~~~--~~~~~~~g~~~~~~l~~fi~~~~~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk  158 (227)
T 4f9z_D           81 RLVDNEQL--NLEDEDIESIDATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAK  158 (227)
T ss_dssp             ETTTTEEE--EECHHHHHTCCHHHHHHHHHHHCCCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHH
T ss_pred             EecCcccc--cccccccCCCCHHHHHHHHHHhCCCceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHH
Confidence            97554432  344    478899999999999999999999877533221112466666754 44566788899999999


Q ss_pred             hccCCCCceEEEEEecc--cchHHHHhhCCCCCCccccceEEEEEEecCCC-eeEEEecCCCCCcccccchhhHHHHHHH
Q psy16770        395 ESRFVHNNIAFMYVFIE--KQPEFVNALTSPEDSSEISLHIAAMWRMDYKK-IKYGWLLGDAVDDWKDYNTTKDRLDAGL  471 (554)
Q Consensus       395 ~~~~~~~~v~F~~vd~~--~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ky~~~~~~~~~~~~~~~~t~e~l~~fl  471 (554)
                      +  ++++ +.|+|+|++  .....++.|    |...  .++|.+.+.+..+ .+|.+..+         ++|.++|.+|+
T Consensus       159 ~--~k~~-i~F~~vd~~~~~~~~~l~~f----gl~~--~~~P~~~i~~~~~~~ky~~~~~---------~~t~~~i~~Fv  220 (227)
T 4f9z_D          159 L--FQGK-ILFILVDSGMKENGKVISFF----KLKE--SQLPALAIYQTLDDEWDTLPTA---------EVSVEHVQNFC  220 (227)
T ss_dssp             H--TTTT-CEEEEEETTSGGGHHHHHHT----TCCG--GGCSEEEEEESSSCCEEEETTC---------CCCHHHHHHHH
T ss_pred             H--hhCC-EEEEEeCCccHhHHHHHHHc----CCCc--ccCCEEEEEECCCCccccCCcC---------CCCHHHHHHHH
Confidence            9  9865 999999996  355677777    2111  2555554445444 56755333         47999999999


Q ss_pred             HhhhcCC
Q psy16770        472 RSLVNDP  478 (554)
Q Consensus       472 ~~~~~g~  478 (554)
                      ++++.|+
T Consensus       221 ~~~~~Gk  227 (227)
T 4f9z_D          221 DGFLSGK  227 (227)
T ss_dssp             HHHHTTC
T ss_pred             HHHhCCC
Confidence            9999996

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.68  E-value=5.2e-17  Score=138.35  Aligned_cols=106  Identities=11%  Similarity=0.238  Sum_probs=88.6

Q ss_pred             cccccc-ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLSTTH-WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~Lt~-~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +..|+. ++|++.+..+..+++++|.||++||++|+.+.|.++++++.++..++.++.||++.++.++++|+|.+ +||+
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~Pt~   80 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISA-VPYF   80 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCS-SSEE
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCc-ccEE
Confidence            456776 89998885324578999999999999999999999999998643369999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++|++|+.+....|. ..++|.+++.+.+
T Consensus        81 ~~~~~G~~~~~~~G~-~~~~l~~~l~~~~  108 (112)
T 3d6i_A           81 IIIHKGTILKELSGA-DPKEYVSLLEDCK  108 (112)
T ss_dssp             EEEETTEEEEEECSC-CHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEecCC-CHHHHHHHHHHHH
Confidence            999999988777676 4467999998764

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.68  E-value=6.4e-17  Score=148.75  Aligned_cols=118  Identities=17%  Similarity=0.188  Sum_probs=96.8

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEc-------ccccccccchHHHHHHHHHhC-----CCCEEEEEEEecCcHHH
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYS-------DWCFACLQVEPIFKKLMDELS-----PLGVGFFTVHVHNEQGL  194 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya-------~wC~~C~~l~p~~~~~a~~l~-----~~~v~~~~Vd~~~~~~l  194 (554)
                      ..+++||.++|++.|. .+.+.++||.|||       +||++|+.+.|+|+++|+++.     + ++.|++||+++++++
T Consensus        18 ~~vi~lt~~nF~~~v~-~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~-~v~f~kvD~d~~~~l   95 (178)
T 3ga4_A           18 TGVITVTADNYPLLSR-GVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQS-LNLFFTVDVNEVPQL   95 (178)
T ss_dssp             TSEEECCTTTHHHHTT-CCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTC-CEEEEEEETTTCHHH
T ss_pred             CCCEECCHHHHHHHHc-ccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCC-CEEEEEEECccCHHH
Confidence            4688999999999874 2346689999999       499999999999999999986     5 599999999999999


Q ss_pred             HHHhCCcCCCCcceeccCCeE-------------EEE---eCCcccHHHHHHHHHHhCCCCccccCCccc
Q psy16770        195 ARRLGVGSQLPQIALLTDGRT-------------SFF---KEPSFSVQKMVEFFRLKLPYKLIVPLSATN  248 (554)
Q Consensus       195 ~~~~~v~~~~Pti~~~~~g~~-------------~~y---~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~  248 (554)
                      +++|||++ +||+++|++|..             ..|   .++.++++.|.+||.+.++.. +.+...-+
T Consensus        96 a~~~~I~s-iPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~-i~I~rp~n  163 (178)
T 3ga4_A           96 VKDLKLQN-VPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNIS-ITVPQAFN  163 (178)
T ss_dssp             HHHTTCCS-SCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCC-CCCCCSCC
T ss_pred             HHHcCCCC-CCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCC-ccccCCCC
Confidence            99999997 999999988742             233   232468999999999998866 33333334

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.68  E-value=8.9e-17  Score=136.57  Aligned_cols=101  Identities=16%  Similarity=0.365  Sum_probs=89.4

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      ....|.++|+..+   ..+++++|.||++||++|+.+.|.++++++.+.+  +.++.||++.++.++++|+|.+ +||++
T Consensus         9 ~~~~~~~~f~~~~---~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~--~~~~~vd~~~~~~l~~~~~v~~-~Pt~~   82 (109)
T 3f3q_A            9 TQFKTASEFDSAI---AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ--ADFYKLDVDELGDVAQKNEVSA-MPTLL   82 (109)
T ss_dssp             EECCSHHHHHHHT---TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTCHHHHHHTTCCS-SSEEE
T ss_pred             cCCCCHHHHHHHH---hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHcCCCc-cCEEE
Confidence            4456788999888   4588999999999999999999999999999864  8999999999999999999997 99999


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +|++|+.+....|. +.+.|.+++.+.+
T Consensus        83 ~~~~G~~~~~~~G~-~~~~l~~~i~~~l  109 (109)
T 3f3q_A           83 LFKNGKEVAKVVGA-NPAAIKQAIAANA  109 (109)
T ss_dssp             EEETTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             EEECCEEEEEEeCC-CHHHHHHHHHhhC
Confidence            99999987776676 6699999998753

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=4.5e-17  Score=141.96  Aligned_cols=106  Identities=23%  Similarity=0.331  Sum_probs=91.9

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      ..+++||.++|++.+.   .  .++|.||++||++|+.+.|.++++++.+.+.++.++.||+++++.+|++|+|.+ +||
T Consensus         7 ~~v~~l~~~~f~~~~~---~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~-~Pt   80 (126)
T 1x5e_A            7 GNVRVITDENWRELLE---G--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINA-LPT   80 (126)
T ss_dssp             CSEEECCTTTHHHHTS---S--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCS-SSE
T ss_pred             CccEEecHHHHHHHhC---C--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcc-cCE
Confidence            3578899999998762   2  399999999999999999999999999875469999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      +++|++|+...+. |..+.+.|.+|+.+.+...
T Consensus        81 ~~~~~~G~~~~~~-G~~~~~~l~~~l~~~~~~~  112 (126)
T 1x5e_A           81 IYHCKDGEFRRYQ-GPRTKKDFINFISDKEWKS  112 (126)
T ss_dssp             EEEEETTEEEECC-SCCCHHHHHHHHHTCGGGG
T ss_pred             EEEEeCCeEEEee-cCCCHHHHHHHHHHHhhcc
Confidence            9999999965444 5568899999999886544

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.68  E-value=1.8e-17  Score=147.41  Aligned_cols=105  Identities=9%  Similarity=0.148  Sum_probs=88.3

Q ss_pred             ccccc-cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLSTT-HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~Lt-~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +..|+ .++|++.|.. .++++++|.|||+||++|+.+.|.++++|+++.+ .+.|++||++++++++++|+|.+ .||+
T Consensus        23 v~~l~t~~~f~~~v~~-~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~-~v~f~kVDVDe~~e~a~~y~V~s-iPT~   99 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVN-EDERLVCIRFGHDYDPDCMKMDELLYKVADDIKN-FCVIYLVDITEVPDFNTMYELYD-PVSV   99 (160)
T ss_dssp             CEECCSHHHHHHHHHH-CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTCCTTTTTTTCCS-SEEE
T ss_pred             hhccCCHHHHHHHHHh-cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHcCCCC-CCEE
Confidence            33444 5899988853 2578999999999999999999999999999976 49999999999999999999997 9999


Q ss_pred             eeccCCeEE--E-------EeCCccc-HHHHHHHHHHhC
Q psy16770        208 ALLTDGRTS--F-------FKEPSFS-VQKMVEFFRLKL  236 (554)
Q Consensus       208 ~~~~~g~~~--~-------y~~g~~~-~~~i~~fl~~~~  236 (554)
                      ++|++|+.+  .       ...|... .+.|.++++..+
T Consensus       100 ~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~  138 (160)
T 2av4_A          100 MFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIF  138 (160)
T ss_dssp             EEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence            999999987  3       3444444 788888887654

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.68  E-value=1.2e-16  Score=142.15  Aligned_cols=108  Identities=26%  Similarity=0.461  Sum_probs=94.0

Q ss_pred             ccccccccccccccccCCC---------CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHH
Q psy16770        127 FHKLSTTHWNFEKNYIPKS---------YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARR  197 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~---------~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~  197 (554)
                      ..+..||..+|+..|...+         .+++++|.||++||++|+.+.|.++++++.+.+ .+.++.||++.++.+|++
T Consensus        22 ~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~  100 (141)
T 3hxs_A           22 SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDKEPELARD  100 (141)
T ss_dssp             -CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHH
T ss_pred             CCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCCCHHHHHH
Confidence            4578899999998886432         478999999999999999999999999999986 499999999999999999


Q ss_pred             hCCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        198 LGVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       198 ~~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      |+|.+ +||+++| .+|+...+.| ..+.+.|.+|+.+.+.
T Consensus       101 ~~v~~-~Pt~~~~~~~g~~~~~~G-~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A          101 FGIQS-IPTIWFVPMKGEPQVNMG-ALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             TTCCS-SSEEEEECSSSCCEEEES-CCCHHHHHHHHHHTTC
T ss_pred             cCCCC-cCEEEEEeCCCCEEEEeC-CCCHHHHHHHHHHHHc
Confidence            99997 9999999 6777776664 4588999999988764

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.67  E-value=5.4e-18  Score=171.26  Aligned_cols=70  Identities=37%  Similarity=0.641  Sum_probs=0.0

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770         17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTT   86 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~   86 (554)
                      ...|||++|||+++|+.+|||+|||+||++||||+++++.|+++|++|++||++|+||.+|+.||.++..
T Consensus        26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   95 (329)
T 3lz8_A           26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH   95 (329)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence            3579999999999999999999999999999999998888999999999999999999999999998543

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=9.9e-18  Score=148.63  Aligned_cols=105  Identities=16%  Similarity=0.281  Sum_probs=90.7

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCc-----
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVG-----  201 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~-----  201 (554)
                      ..+..+|.++|++.+. .+.+++++|.|||+||++|+.+.|.|+++++.+++.++.++.||+++++.+|++|+|.     
T Consensus         7 ~~v~~l~~~~f~~~~~-~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~   85 (137)
T 2dj0_A            7 GYIKYFNDKTIDEELE-RDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLT   85 (137)
T ss_dssp             SCCEECCTTHHHHHHH-HSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSS
T ss_pred             ceEEEccHhhHHHHHh-cCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCc
Confidence            4588899999999884 2345599999999999999999999999999998646999999999999999999998     


Q ss_pred             -CCCCcceeccCCeEEEEeCCcccHHHHHHHHH
Q psy16770        202 -SQLPQIALLTDGRTSFFKEPSFSVQKMVEFFR  233 (554)
Q Consensus       202 -~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~  233 (554)
                       + +||+++|++|+.+....|..+.+.|.+|+.
T Consensus        86 ~~-~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~  117 (137)
T 2dj0_A           86 KQ-LPTLILFQGGKEAMRRPQIDKKGRAVSWTF  117 (137)
T ss_dssp             SC-SSEEEEESSSSEEEEESCBCSSSCBCCCCC
T ss_pred             CC-CCEEEEEECCEEEEEecCcCchHHHHHHHh
Confidence             8 999999999998877777767666655553

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.67  E-value=7.6e-18  Score=143.05  Aligned_cols=67  Identities=31%  Similarity=0.446  Sum_probs=62.1

Q ss_pred             CCCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASL--QEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~--~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|+|+||||+++++.  ++||+|||+|++++|||++++   .++|++|++||++|+||.+|+.||.+|..+
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---~e~f~~I~~AYevL~d~~~R~~~~~~~~~w   75 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGGFW   75 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---TTTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---HHHHHHHHHHHHHHCCHHHHHHhhhccccc
Confidence            3689999999999999  999999999999999999865   479999999999999999999999988654

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.66  E-value=3.8e-17  Score=142.23  Aligned_cols=105  Identities=21%  Similarity=0.478  Sum_probs=88.3

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEccccc--------------ccccchHHHHHHHHHhCCCCEEEEEEEecCcHH
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCF--------------ACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG  193 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~--------------~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~  193 (554)
                      .+.+|+.++|++.+.  +.+++++|.||++||+              +|+.+.|.++++++.+.+ ++.+++||++.++.
T Consensus         4 ~v~~l~~~~f~~~~~--~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~-~~~~~~vd~d~~~~   80 (123)
T 1oaz_A            4 KIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPG   80 (123)
T ss_dssp             SCEECCSTTHHHHTT--SCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTSCTT
T ss_pred             ccEecChhhHHHHHH--hCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC-CeEEEEEECCCCHH
Confidence            578899999997775  4678999999999999              999999999999998876 49999999999999


Q ss_pred             HHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        194 LARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       194 l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++++|+|++ +||+++|++|+.+....|.++.++|.+|+.+.+
T Consensus        81 l~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           81 TAPKYGIRG-IPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             TGGGGTCCB-SSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHHHcCCCc-cCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            999999998 999999999998766666678899999998764

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.66  E-value=5e-17  Score=142.95  Aligned_cols=110  Identities=17%  Similarity=0.269  Sum_probs=96.0

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC-CCEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-LGVGFFTVHVHNEQGLARRLGVGSQLP  205 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~-~~v~~~~Vd~~~~~~l~~~~~v~~~~P  205 (554)
                      ..+..|+.++|+..+.  ..+++++|+||++||++|+.+.|.|+++++.+++ ..+.++.|||+.+..++++|+|.+ +|
T Consensus         7 ~~v~~l~~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~P   83 (133)
T 2dj3_A            7 GPVKVVVGKTFDAIVM--DPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEG-FP   83 (133)
T ss_dssp             CSSEECCTTTCCCCCT--CTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSS-SS
T ss_pred             CceEEEcCCCHHHHhc--cCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCc-CC
Confidence            4588899999999885  3478999999999999999999999999999974 259999999999999999999997 99


Q ss_pred             cceeccCCeE---EEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        206 QIALLTDGRT---SFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       206 ti~~~~~g~~---~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      |+++|.+|..   +.+.||.++.+.|.+|+.+.++..
T Consensus        84 t~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~  120 (133)
T 2dj3_A           84 TIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKR  120 (133)
T ss_dssp             EEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSC
T ss_pred             EEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcccc
Confidence            9999987643   456667678899999999998755

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.66  E-value=4.9e-17  Score=147.23  Aligned_cols=71  Identities=28%  Similarity=0.628  Sum_probs=64.6

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh-------HHHHHHHHHHHHHHcCChHHHHhhhccCC
Q psy16770         15 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT-------AQEKFLQLTEAYNILSDAERRKQYDLFGT   85 (554)
Q Consensus        15 ~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~-------~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~   85 (554)
                      .....|||+||||+++++.++||+|||+|++++||||++.+.       +.++|++|++||++|+||.+|+.||..+.
T Consensus         6 ~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~   83 (155)
T 2l6l_A            6 QMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC   83 (155)
T ss_dssp             CCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred             cCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            455789999999999999999999999999999999987542       67899999999999999999999998664

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.66  E-value=2.4e-16  Score=137.95  Aligned_cols=88  Identities=24%  Similarity=0.428  Sum_probs=81.6

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCccc
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFS  224 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~  224 (554)
                      ..+++++|.||++||++|+++.|.++++++.+++ ++.++.||++.++.++++|+|.+ +||++++++|+.+....|..+
T Consensus        40 ~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~  117 (128)
T 3ul3_B           40 MKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLDKNESLARKFSVKS-LPTIILLKNKTMLARKDHFVS  117 (128)
T ss_dssp             SCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGGGCHHHHHHTTCCS-SSEEEEEETTEEEEEESSCCC
T ss_pred             ccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCC-cCEEEEEECCEEEEEecCCCC
Confidence            4678999999999999999999999999999975 59999999999999999999997 999999999998888778789


Q ss_pred             HHHHHHHHHH
Q psy16770        225 VQKMVEFFRL  234 (554)
Q Consensus       225 ~~~i~~fl~~  234 (554)
                      .++|.+|+++
T Consensus       118 ~~~l~~~l~~  127 (128)
T 3ul3_B          118 SNDLIALIKK  127 (128)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999999865

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.65  E-value=2.2e-16  Score=134.22  Aligned_cols=103  Identities=17%  Similarity=0.319  Sum_probs=90.7

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-CcHHHHHHhCCcCCCCc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-NEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-~~~~l~~~~~v~~~~Pt  206 (554)
                      .+..||.++|++.+.. ..+++++|.||++||++|+.+.|.++++++.+.  ++.++.||++ .+..++++|+|.+ +||
T Consensus         6 ~v~~l~~~~~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~~~~~~~~v~~-~Pt   81 (111)
T 2pu9_C            6 KVTEVNKDTFWPIVKA-AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLAKELGIRV-VPT   81 (111)
T ss_dssp             SEEEECTTTHHHHHTT-CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSTTHHHHHHHCCSB-SSE
T ss_pred             ccEEechHHHHHHHHh-cCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC--CeEEEEEecCcchHHHHHHcCCCe-eeE
Confidence            5788999999998853 247899999999999999999999999999987  4899999998 7899999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      ++++++|+.+....|. +.++|.+++.+.
T Consensus        82 ~~~~~~G~~~~~~~G~-~~~~l~~~l~~~  109 (111)
T 2pu9_C           82 FKILKENSVVGEVTGA-KYDKLLEAIQAA  109 (111)
T ss_dssp             EEEESSSSEEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEEeCCcEEEEEcCC-CHHHHHHHHHHh
Confidence            9999999987766666 478999999765

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.65  E-value=1.2e-16  Score=139.51  Aligned_cols=102  Identities=18%  Similarity=0.219  Sum_probs=91.1

Q ss_pred             cccccc-ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLSTTH-WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~Lt~-~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +..|+. ++|++.+   +.+++++|.||++||++|+.+.|.++++++.+.  ++.++.||++.++++|++|+|.+ +||+
T Consensus        21 v~~l~~~~~f~~~~---~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~-~Pt~   94 (125)
T 1r26_A           21 VVDVYSVEQFRNIM---SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADNNSEIVSKCRVLQ-LPTF   94 (125)
T ss_dssp             CEEECCHHHHHHHH---HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCS-SSEE
T ss_pred             eEECCCHHHHHHHH---ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHcCCCc-ccEE
Confidence            677888 9999988   467899999999999999999999999999984  59999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      ++|++|+.+....| .+.+.|.+++.+.++
T Consensus        95 ~i~~~G~~~~~~~G-~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           95 IIARSGKMLGHVIG-ANPGMLRQKLRDIIK  123 (125)
T ss_dssp             EEEETTEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred             EEEeCCeEEEEEeC-CCHHHHHHHHHHHhc
Confidence            99999998776666 477999999987653

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.65  E-value=2.4e-16  Score=132.38  Aligned_cols=104  Identities=13%  Similarity=0.316  Sum_probs=89.9

Q ss_pred             cccccc-ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLSTTH-WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~Lt~-~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +.+|+. ++|++.+.. ..+++++|.||++||++|+.+.|.++++++.+++ ++.++.||++.++.++++++|.+ +||+
T Consensus         2 v~~l~~~~~~~~~l~~-~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~-~Pt~   78 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTK-ASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDECEDIAMEYNISS-MPTF   78 (106)
T ss_dssp             EEECCSHHHHHHHHHH-HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCHHHHHHTTCCS-SSEE
T ss_pred             ceecCCHHHHHHHHHh-cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC-CeEEEEEeccchHHHHHHcCCCc-ccEE
Confidence            346676 888888742 2578999999999999999999999999999875 59999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +++++|+.+....| .+.+.|.+++.+.+
T Consensus        79 ~~~~~G~~~~~~~g-~~~~~l~~~i~~~l  106 (106)
T 1xwb_A           79 VFLKNGVKVEEFAG-ANAKRLEDVIKANI  106 (106)
T ss_dssp             EEEETTEEEEEEES-CCHHHHHHHHHHTC
T ss_pred             EEEcCCcEEEEEcC-CCHHHHHHHHHHhC
Confidence            99999998776666 47799999998753

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.65  E-value=1.6e-16  Score=143.75  Aligned_cols=121  Identities=12%  Similarity=0.192  Sum_probs=95.0

Q ss_pred             cccccc-cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        128 HKLSTT-HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       128 ~~~~Lt-~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      .+..++ .++|+..+.. ..+++++|.||++||++|+.+.|.++++++.+.  ++.|+.||+++++.+|++|+|.+ +||
T Consensus        13 ~v~~l~~~~~~~~~~~~-~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~~~~~~l~~~~~v~~-~Pt   88 (153)
T 2wz9_A           13 AVEEVGSAGQFEELLRL-KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEGVPEVSEKYEISS-VPT   88 (153)
T ss_dssp             CSEEECSHHHHHHHHHH-TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCS-SSE
T ss_pred             CeEEcCCHHHHHHHHHh-cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC--CeEEEEEECCCCHHHHHHcCCCC-CCE
Confidence            466676 5888887742 237899999999999999999999999999974  59999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhCCCC------ccccCCcccHHHHH
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK------LIVPLSATNVDAFL  253 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~------~v~~~t~~~~~~fl  253 (554)
                      +++|.+|+.+.+..|. +.++|.+++.+.++..      .+..+++++++++.
T Consensus        89 ~~~~~~G~~~~~~~G~-~~~~l~~~i~~~l~~~~~~~~~~~~~l~~~~f~~~~  140 (153)
T 2wz9_A           89 FLFFKNSQKIDRLDGA-HAPELTKKVQRHASSGSFLPSAKVKVDTDPNSSSVD  140 (153)
T ss_dssp             EEEEETTEEEEEEESS-CHHHHHHHHHHHSCTTSSCSCCCCCCC---------
T ss_pred             EEEEECCEEEEEEeCC-CHHHHHHHHHHHhccccCCCccccccCCCCChhhHH
Confidence            9999999988777675 6789999999987543      35556777776654

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.65  E-value=1.7e-16  Score=134.05  Aligned_cols=99  Identities=17%  Similarity=0.275  Sum_probs=85.9

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD  212 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~  212 (554)
                      +.++|++.+.. +.+++++|.||++||++|+.+.|.++++++.+.  ++.++.||++.++.++++|+|.+ +||+++|++
T Consensus         8 ~~~~~~~~~~~-~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~~   83 (107)
T 1gh2_A            8 SDPDFQPELSG-AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQCQGTAATNNISA-TPTFQFFRN   83 (107)
T ss_dssp             SGGGHHHHHHH-TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCS-SSEEEEEET
T ss_pred             CHHHHHHHHHh-CCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC--CcEEEEEECccCHHHHHhcCCCc-ccEEEEEEC
Confidence            56889888742 257899999999999999999999999999984  59999999999999999999997 999999999


Q ss_pred             CeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        213 GRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       213 g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      |+.+....|. ..++|.+|+.+.+
T Consensus        84 G~~~~~~~G~-~~~~l~~~l~~~l  106 (107)
T 1gh2_A           84 KVRIDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             TEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             CeEEEEEeCC-CHHHHHHHHHHhc
Confidence            9987766665 4466999998764

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.65  E-value=5e-16  Score=135.26  Aligned_cols=110  Identities=12%  Similarity=0.192  Sum_probs=92.0

Q ss_pred             cccccccccccc--cccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEE--ecCcHHHHHHhCCcCC
Q psy16770        128 HKLSTTHWNFEK--NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVH--VHNEQGLARRLGVGSQ  203 (554)
Q Consensus       128 ~~~~Lt~~~F~~--~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd--~~~~~~l~~~~~v~~~  203 (554)
                      .+..++..+|+.  .......+++++|.||++||++|+.+.|.++++++.+++ ++.++.||  ++.+..++++|+|.+ 
T Consensus         5 ~~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~d~~~~~~~~~~v~~-   82 (126)
T 2l57_A            5 GIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG-KFNIYYARLEEEKNIDLAYKYDANI-   82 (126)
T ss_dssp             CSSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS-SCEEEEEETTSSHHHHHHHHTTCCS-
T ss_pred             ccCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC-CeEEEEEeCCCCchHHHHHHcCCcc-
Confidence            455667777761  111124678999999999999999999999999999974 69999999  999999999999997 


Q ss_pred             CCcceecc-CCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        204 LPQIALLT-DGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       204 ~Pti~~~~-~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      +||++++. +|+.+....|..+.+.|.+++.+.+.+.
T Consensus        83 ~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  119 (126)
T 2l57_A           83 VPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVKE  119 (126)
T ss_dssp             SSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHCCCC
T ss_pred             eeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHhccc
Confidence            99999997 8988766656678899999999987665

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.65  E-value=1.5e-16  Score=135.76  Aligned_cols=104  Identities=14%  Similarity=0.331  Sum_probs=92.1

Q ss_pred             cccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770        126 LFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLP  205 (554)
Q Consensus       126 ~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~P  205 (554)
                      ......+|.++|++.+   ..+++++|.||++||++|+.+.|.++++++.+.  ++.++.||++.++.++++|+|.+ +|
T Consensus         8 ~~~~~~~~~~~f~~~~---~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~~~~~~~~~~v~~-~P   81 (112)
T 1syr_A            8 HMVKIVTSQAEFDSII---SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDEVSEVTEKENITS-MP   81 (112)
T ss_dssp             -CCEEECSHHHHHHHH---HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTTHHHHHHTTCCS-SS
T ss_pred             eeEEEECCHHHHHHHH---ccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCCCHHHHHHcCCCc-cc
Confidence            3346678899999988   367899999999999999999999999999986  48999999999999999999997 99


Q ss_pred             cceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        206 QIALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       206 ti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      |++++++|+.+....|. +.+.|.+++.+.+
T Consensus        82 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           82 TFKVYKNGSSVDTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             EEEEEETTEEEEEEESC-CHHHHHHHHHTTC
T ss_pred             EEEEEECCcEEEEEeCC-CHHHHHHHHHHhh
Confidence            99999999987766676 8899999998754

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.65  E-value=6.7e-17  Score=139.87  Aligned_cols=106  Identities=20%  Similarity=0.308  Sum_probs=89.7

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+..||.++|++.+.  ..+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||++.++.+|++|+|.+ +||+
T Consensus         4 ~v~~l~~~~f~~~~~--~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~-~Pt~   79 (122)
T 3aps_A            4 ASIDLTPQTFNEKVL--QGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQAYPQTCQKAGIKA-YPSV   79 (122)
T ss_dssp             CSEECCHHHHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTCHHHHHHTTCCS-SSEE
T ss_pred             chhcCCHHHHHHHHh--cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcCCHHHHHHcCCCc-cceE
Confidence            477899999977665  4578999999999999999999999999999986 59999999999999999999997 9999


Q ss_pred             eeccCCeE-EEEeC---CcccHHHHHHHHHHhCC
Q psy16770        208 ALLTDGRT-SFFKE---PSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       208 ~~~~~g~~-~~y~~---g~~~~~~i~~fl~~~~~  237 (554)
                      ++|.+|.. ..+.|   |.++.+.|.+|+.+.+.
T Consensus        80 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l~  113 (122)
T 3aps_A           80 KLYQYERAKKSIWEEQINSRDAKTIAALIYGKLE  113 (122)
T ss_dssp             EEEEEEGGGTEEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             EEEeCCCccceeeccccCcCCHHHHHHHHHHHHH
Confidence            99965543 33333   22588999999988754

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.65  E-value=1.9e-16  Score=134.81  Aligned_cols=104  Identities=14%  Similarity=0.280  Sum_probs=89.0

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      +..+|.++| +.+.   .+++++|.||++||++|+.+.|.++++++.+.  ++.++.||++.++.++++++|.+ +||++
T Consensus         5 ~~~~~~~~f-~~~~---~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~-~Pt~~   77 (110)
T 2l6c_A            5 RDITTEAGM-AHFE---GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEARPELMKELGFER-VPTLV   77 (110)
T ss_dssp             SBCGGGCSH-HHHT---TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGGGCHHHHHHTTCCS-SCEEE
T ss_pred             eecCCHHHH-HHHH---cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCcCCHHHHHHcCCcc-cCEEE
Confidence            456788999 6663   56899999999999999999999999998875  58999999999999999999997 99999


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      +|++|+.+....|..+.+.|.+++.+..++.
T Consensus        78 ~~~~G~~v~~~~G~~~~~~l~~~~~~~~~~~  108 (110)
T 2l6c_A           78 FIRDGKVAKVFSGIMNPRELQALYASIHHHH  108 (110)
T ss_dssp             EEESSSEEEEEESCCCHHHHHHHHHTC----
T ss_pred             EEECCEEEEEEcCCCCHHHHHHHHHHHhhhc
Confidence            9999998877767678899999998876654

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.65  E-value=2.2e-16  Score=135.70  Aligned_cols=103  Identities=17%  Similarity=0.364  Sum_probs=90.0

Q ss_pred             ccccccc-ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        128 HKLSTTH-WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       128 ~~~~Lt~-~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      .+.+++. ++|++.+.. ..+++++|.||++||++|+.+.|.++++++.+   ++.++.||++.++.++++|+|.+ +||
T Consensus        14 ~v~~l~~~~~~~~~l~~-~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~-~Pt   88 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQ-HKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDKLEETARKYNISA-MPT   88 (117)
T ss_dssp             EEEECCSTTHHHHHHHH-TTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTTSHHHHHHTTCCS-SSE
T ss_pred             eeEEeCCHHHHHHHHHh-CCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCccHHHHHHcCCCc-cce
Confidence            3677887 899888742 25789999999999999999999999999887   58999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++++++|+.+....|. +.+.|.+++.+.+
T Consensus        89 ~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  117 (117)
T 2xc2_A           89 FIAIKNGEKVGDVVGA-SIAKVEDMIKKFI  117 (117)
T ss_dssp             EEEEETTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             EEEEeCCcEEEEEeCC-CHHHHHHHHHHhC
Confidence            9999999987766664 7789999998753

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.64  E-value=2.6e-15  Score=155.20  Aligned_cols=244  Identities=14%  Similarity=0.185  Sum_probs=173.7

Q ss_pred             HhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCC
Q psy16770        234 LKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDK  313 (554)
Q Consensus       234 ~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~  313 (554)
                      ...++.+..+.+.+++++|+..   ++.++|++|.+..++....+..++...+++.||.+     .+.+++++++++  .
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~---~~~~vvgff~~~~~~~~~~f~~~A~~~~~~~F~~t-----~~~~v~~~~~v~--~   82 (361)
T 3uem_A           13 GPGSEFATTLPDGAAAESLVES---SEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGIT-----SNSDVFSKYQLD--K   82 (361)
T ss_dssp             CCCCSSSEECCSHHHHHHHHHT---SSEEEEEECSCTTSHHHHHHHHHHHHCSSSCEEEE-----CCHHHHHHTTCS--S
T ss_pred             CCccccceecCCHHHHHHHHhc---CCcEEEEEEcCCCchHHHHHHHHHhcCCCceEEEE-----CcHHHHHHhCCC--C
Confidence            3344443334466889999963   34444555655556666666666633478999999     789999999998  4


Q ss_pred             ceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccccccchhhhhhcCCCCceEEEEEc-CCCCcchhHHHHHHHH
Q psy16770        314 DSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFS-EDSPEHDASRHTLRRF  392 (554)
Q Consensus       314 Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~c~~~~lcvvl~~-~~~~~~~~~~~~l~~~  392 (554)
                      |+|++|++..+.+  ..+.++++.+.|.+||+.+..|++.+++.+++....-...+..+|+|. +...++....+.++++
T Consensus        83 ~~i~lfk~f~~~~--~~~~g~~~~~~i~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~  160 (361)
T 3uem_A           83 DGVVLFKKFDEGR--NNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTA  160 (361)
T ss_dssp             SEEEEEESSTTSE--EECCSCCCHHHHHHHHHHHSSCSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CeEEEEEecCCCc--cccCCcCCHHHHHHHHHHcCCCcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHH
Confidence            8999999865554  467788999999999999999999999987765544322245556665 4556788899999999


Q ss_pred             HhhccCCCCceEEEEEecc--cchHHHHhhCCCCCCccccceEEEEEEec--CCCeeEEEecCCCCCcccccchhhHHHH
Q psy16770        393 AQESRFVHNNIAFMYVFIE--KQPEFVNALTSPEDSSEISLHIAAMWRMD--YKKIKYGWLLGDAVDDWKDYNTTKDRLD  468 (554)
Q Consensus       393 a~~~~~~~~~v~F~~vd~~--~q~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~ky~~~~~~~~~~~~~~~~t~e~l~  468 (554)
                      |++  ++++ +.|+++|++  ...++++.|-..   .   .++|.+...+  ....+|.+ +++        ..|.+.|.
T Consensus       161 A~~--~~~~-i~f~~vd~~~~~~~~~~~~fgi~---~---~~~P~~~~~~~~~~~~ky~~-~~~--------~~~~~~l~  222 (361)
T 3uem_A          161 AES--FKGK-ILFIFIDSDHTDNQRILEFFGLK---K---EECPAVRLITLEEEMTKYKP-ESE--------ELTAERIT  222 (361)
T ss_dssp             HGG--GTTT-CEEEEECTTSGGGHHHHHHTTCC---T---TTCSEEEEEECC--CCEECC-SSC--------CCCHHHHH
T ss_pred             HHH--ccCc-eEEEEecCChHHHHHHHHHcCCC---c---cCCccEEEEEcCCcccccCC-Ccc--------ccCHHHHH
Confidence            999  9754 999999998  678888887111   1   1244333323  23467854 321        46889999


Q ss_pred             HHHHhhhcCCCCCccccccccch-hhhhhhHHHHHHHHHH
Q psy16770        469 AGLRSLVNDPYNNLLYDTALKEI-SDEYIQSLGVRIFNRI  507 (554)
Q Consensus       469 ~fl~~~~~g~~~~~~~~~~lp~~-~de~~~~~~~r~~~~~  507 (554)
                      +|+++++.|+.+|...+..+|+- .++.++.+.+..|.++
T Consensus       223 ~fi~~~l~g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~  262 (361)
T 3uem_A          223 EFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDV  262 (361)
T ss_dssp             HHHHHHHTTCSCCCCBCCCCCTTTTTSSSEEECTTTHHHH
T ss_pred             HHHHHHhcCCCcccccCCCCCcccccCCcEEeecCchhhh
Confidence            99999999999888888888874 5556666666666653

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.64  E-value=1.8e-16  Score=134.77  Aligned_cols=105  Identities=19%  Similarity=0.361  Sum_probs=90.5

Q ss_pred             cccc-ccccccccccC-CCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        129 KLST-THWNFEKNYIP-KSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       129 ~~~L-t~~~F~~~v~~-~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      +..+ +.++|++.+.. +..+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||++.++.++++|+|.+ +||
T Consensus         4 v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~-~Pt   81 (112)
T 1ep7_A            4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDAVAAVAEAAGITA-MPT   81 (112)
T ss_dssp             EEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTTHHHHHHHTCCB-SSE
T ss_pred             EEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCchHHHHHHcCCCc-ccE
Confidence            5556 56889888842 11178999999999999999999999999999986 59999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++++++|+.+....|. +.+.|.+++.+.+
T Consensus        82 ~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  110 (112)
T 1ep7_A           82 FHVYKDGVKADDLVGA-SQDKLKALVAKHA  110 (112)
T ss_dssp             EEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred             EEEEECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence            9999999987666666 7899999998764

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.64  E-value=2.6e-16  Score=132.04  Aligned_cols=99  Identities=20%  Similarity=0.327  Sum_probs=87.5

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD  212 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~  212 (554)
                      +.++|++.+.. ..+++++|.||++||++|+.+.|.++++++.+.+  +.++.||+++++.++++++|.+ +||+++|++
T Consensus         7 ~~~~~~~~l~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~~   82 (105)
T 3m9j_A            7 SKTAFQEALDA-AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDVDDCQDVASESEVKS-MPTFQFFKK   82 (105)
T ss_dssp             SHHHHHHHHHH-TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT--SEEEEEETTTCHHHHHHTTCCB-SSEEEEEET
T ss_pred             CHHHHHHHHHh-cCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC--eEEEEEEhhhhHHHHHHcCCCc-CcEEEEEEC
Confidence            46677777632 2578999999999999999999999999999864  8999999999999999999997 999999999


Q ss_pred             CeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        213 GRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       213 g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      |+.+....|. +.+.|.+++.+.+
T Consensus        83 g~~~~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           83 GQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             TEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             CeEEEEEeCC-CHHHHHHHHHHhC
Confidence            9988777777 8899999998764

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.64  E-value=2e-16  Score=152.25  Aligned_cols=108  Identities=20%  Similarity=0.454  Sum_probs=97.8

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+..||.++|+..+.  +++++++|.||++||++|+.+.|.|+++++.+++ .+.++.|||+.++.+|++|+|.+ +||+
T Consensus        13 ~~~~lt~~~f~~~v~--~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~-~Pt~   88 (222)
T 3dxb_A           13 KIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRG-IPTL   88 (222)
T ss_dssp             CCEECCTTTHHHHHT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCTTTGGGGTCCS-BSEE
T ss_pred             CceeCCHHHHHHHHH--hcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCCCHHHHHHcCCCc-CCEE
Confidence            478899999999765  4678999999999999999999999999999986 49999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      +++++|+.+....|..+.+.|.+|+.+.+...
T Consensus        89 ~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~  120 (222)
T 3dxb_A           89 LLFKNGEVAATKVGALSKGQLKEFLDANLAGS  120 (222)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHSCCS
T ss_pred             EEEECCeEEEEeccccChHHHHHHHHhhcccc
Confidence            99999998766667779999999999998655

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.64  E-value=5e-16  Score=138.07  Aligned_cols=106  Identities=24%  Similarity=0.371  Sum_probs=80.4

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      ..+.+++.++|+..+.  ..++ ++|.||++||++|+.+.|.++++++.+.+ ++.|+.||++.+..++++|+|.+ +||
T Consensus        33 ~~v~~l~~~~~~~~~~--~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~-~Pt  107 (140)
T 1v98_A           33 PWVVEADEKGFAQEVA--GAPL-TLVDFFAPWCGPCRLVSPILEELARDHAG-RLKVVKVNVDEHPGLAARYGVRS-VPT  107 (140)
T ss_dssp             ------------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCHHHHHHTTCCS-SSE
T ss_pred             CccccCCHHHHHHHHH--cCCC-EEEEEECCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCCCHHHHHHCCCCc-cCE
Confidence            3578899999999885  2344 99999999999999999999999999986 59999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      +++|++|+.+....|..+.+.|.+|+.+.+.
T Consensus       108 ~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A          108 LVLFRRGAPVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EEEEeCCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence            9999999987666566788999999988754

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.63  E-value=3e-16  Score=135.73  Aligned_cols=106  Identities=15%  Similarity=0.277  Sum_probs=91.9

Q ss_pred             cccccccccccccccC-CCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        128 HKLSTTHWNFEKNYIP-KSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~-~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      .+..++.++|+..+.. ++.+++++|.||++||++|+.+.|.++++++.+.+  +.++.||++.++.++++|+|.+ +||
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~~~~~~~~~~v~~-~Pt   90 (122)
T 2vlu_A           14 VISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN--AVFLKVDVDELKPIAEQFSVEA-MPT   90 (122)
T ss_dssp             CEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTCHHHHHHTTCCS-SSE
T ss_pred             ceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--cEEEEEECCCCHHHHHHcCCCc-ccE
Confidence            4566788999998852 11478999999999999999999999999999875  8999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      ++++++|+.+....|.. .+.|.+|+.+.++
T Consensus        91 ~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           91 FLFMKEGDVKDRVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             EEEEETTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred             EEEEeCCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence            99999999876665665 7999999988754

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.63  E-value=2.4e-16  Score=135.88  Aligned_cols=101  Identities=12%  Similarity=0.084  Sum_probs=84.0

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+.++|.++|.+.|...+.+++++|.|||+||++|+.+.|.++++|+++.  ++.|++||+++.   +++|+|.+ +||+
T Consensus         4 ~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~--~v~f~kvd~d~~---~~~~~v~~-~PT~   77 (118)
T 3evi_A            4 ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNSC---IQHYHDNC-LPTI   77 (118)
T ss_dssp             SCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT--TSEEEEEEGGGT---STTCCGGG-CSEE
T ss_pred             ceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC--CCEEEEEEhHHh---HHHCCCCC-CCEE
Confidence            36788999999998744445599999999999999999999999999985  489999999986   58999997 9999


Q ss_pred             eeccCCeEEEEeCCcc-------cHHHHHHHHHH
Q psy16770        208 ALLTDGRTSFFKEPSF-------SVQKMVEFFRL  234 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~-------~~~~i~~fl~~  234 (554)
                      ++|++|+.+....|..       +.++|..++.+
T Consensus        78 ~~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           78 FVYKNGQIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             EEEETTEEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             EEEECCEEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence            9999999877665542       45666666644

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.63  E-value=2.4e-16  Score=136.11  Aligned_cols=107  Identities=21%  Similarity=0.313  Sum_probs=89.1

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCC----CCEEEEEEEecCcHHHHHHhCCcC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSP----LGVGFFTVHVHNEQGLARRLGVGS  202 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~----~~v~~~~Vd~~~~~~l~~~~~v~~  202 (554)
                      ..+..|+.++|+..+.  ..+++++|+||++||++|+.+.|.|+++++.+.+    .++.++.|||+.++ +++  +|.+
T Consensus         7 ~~v~~l~~~~f~~~v~--~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~   81 (121)
T 2djj_A            7 GPVTVVVAKNYNEIVL--DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQG   81 (121)
T ss_dssp             CSSEECCTTTTTTSSS--CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSS
T ss_pred             CCeEEecccCHHHHhh--cCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCc
Confidence            3578899999999875  4578999999999999999999999999999975    25999999999876 665  9997


Q ss_pred             CCCcceeccCCeE--EEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        203 QLPQIALLTDGRT--SFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       203 ~~Pti~~~~~g~~--~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                       +||+++|.+|..  ...+.|.++.+.|.+|+.+.+...
T Consensus        82 -~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~  119 (121)
T 2djj_A           82 -FPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYK  119 (121)
T ss_dssp             -SSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSSC
T ss_pred             -CCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccCcC
Confidence             999999977632  333445568899999999887543

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.63  E-value=1.3e-16  Score=126.77  Aligned_cols=64  Identities=19%  Similarity=0.331  Sum_probs=57.5

Q ss_pred             CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCC
Q psy16770         18 SLDPYETLGVPRT--ASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGT   85 (554)
Q Consensus        18 ~~d~y~~Lgv~~~--a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~   85 (554)
                      ..++|+||||+++  ++.++||+|||+|++++|||++++   .++|++|++||++|+|+.+|..+ .+|.
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~---~~~f~~i~~AYe~L~~~~~r~~~-~~g~   75 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNLRM-NLGG   75 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC---HHHHHHHHHHHHHHHHHHHHHTT-CCSS
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHHhhHHHHHHH-hcCC
Confidence            3679999999999  999999999999999999999854   58999999999999999999984 4553

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.62  E-value=5.8e-16  Score=129.52  Aligned_cols=101  Identities=20%  Similarity=0.333  Sum_probs=87.8

Q ss_pred             cccc-ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCccee
Q psy16770        131 STTH-WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIAL  209 (554)
Q Consensus       131 ~Lt~-~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~  209 (554)
                      .++. ++|++.+.. ..+++++|.||++||++|+.+.|.++++++.+.  ++.++.||++.++.++++++|.+ +||+++
T Consensus         3 ~i~~~~~~~~~l~~-~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~-~Pt~~~   78 (104)
T 2vim_A            3 VLATAADLEKLINE-NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQNEEAAAKYSVTA-MPTFVF   78 (104)
T ss_dssp             ECCSHHHHHHHHHT-TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCS-SSEEEE
T ss_pred             ecCCHHHHHHHHHh-cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccCCHHHHHHcCCcc-ccEEEE
Confidence            4555 788887742 267899999999999999999999999999986  58999999999999999999997 999999


Q ss_pred             ccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        210 LTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       210 ~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +++|+.+....|. +.+.|.+++.+.+
T Consensus        79 ~~~g~~~~~~~G~-~~~~l~~~l~~~l  104 (104)
T 2vim_A           79 IKDGKEVDRFSGA-NETKLRETITRHK  104 (104)
T ss_dssp             EETTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             EeCCcEEEEEeCC-CHHHHHHHHHhhC
Confidence            9999987776674 7899999998753

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.62  E-value=6.9e-16  Score=133.90  Aligned_cols=105  Identities=18%  Similarity=0.314  Sum_probs=91.5

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-CcHHHHHHhCCcCCCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-NEQGLARRLGVGSQLP  205 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-~~~~l~~~~~v~~~~P  205 (554)
                      ..+..++.++|++.+.. ..+++++|.||++||++|+.+.|.++++++.+.  ++.++.||++ .+++++++|+|++ +|
T Consensus        18 ~~v~~l~~~~~~~~~~~-~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~v~~-~P   93 (124)
T 1faa_A           18 GKVTEVNKDTFWPIVKA-AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLAKELGIRV-VP   93 (124)
T ss_dssp             TSEEEECTTTHHHHHHH-TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSTTHHHHHHHCCSS-SS
T ss_pred             CceEEecchhHHHHHHh-cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCcchHHHHHHcCCCe-ee
Confidence            45788999999988852 257899999999999999999999999999986  4899999998 6899999999997 99


Q ss_pred             cceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        206 QIALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       206 ti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      |++++++|+.+....|.. .++|.+++.+..
T Consensus        94 t~~~~~~G~~~~~~~G~~-~~~l~~~i~~~~  123 (124)
T 1faa_A           94 TFKILKENSVVGEVTGAK-YDKLLEAIQAAR  123 (124)
T ss_dssp             EEEEEETTEEEEEEESSC-HHHHHHHHHHHT
T ss_pred             EEEEEeCCcEEEEEcCCC-HHHHHHHHHHhh
Confidence            999999999877666664 799999998753

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.62  E-value=2.5e-16  Score=139.33  Aligned_cols=104  Identities=16%  Similarity=0.085  Sum_probs=91.9

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe---------cCcHHHHHH
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV---------HNEQGLARR  197 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~---------~~~~~l~~~  197 (554)
                      ..+..+|.++|++.+.   .  +++|.|||+||++|+.+.|.++++++.++   +.++.||+         +.++.++++
T Consensus        16 ~~v~~l~~~~~~~~~~---~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~~~~~~~d~~~~l~~~   87 (135)
T 3emx_A           16 GRLIYITPEEFRQLLQ---G--DAILAVYSKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSLIGERELSAARLEMNK   87 (135)
T ss_dssp             TEEEECCHHHHHHHHT---S--SEEEEEEETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             CceeecCHHHHHHHhC---C--cEEEEEECCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCchhhhhhhhhHHHHHH
Confidence            3578899999999883   2  99999999999999999999999999875   89999999         889999999


Q ss_pred             hCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        198 LGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       198 ~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      |+|.+ +||++++++|+.+....|..+.+.+..++++.+.++
T Consensus        88 ~~v~~-~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~~~  128 (135)
T 3emx_A           88 AGVEG-TPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYGGE  128 (135)
T ss_dssp             HTCCS-SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC---
T ss_pred             cCCce-eCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhCCC
Confidence            99997 999999999998877777789899999999988765

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.62  E-value=3.6e-16  Score=135.44  Aligned_cols=103  Identities=19%  Similarity=0.378  Sum_probs=89.4

Q ss_pred             cccc-ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLST-THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~L-t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      ...+ +.++|++.+   +.+++++|.||++||++|+.+.|.++++++.+.+.++.++.||++.+++++++|+|.+ +||+
T Consensus        17 ~~~i~~~~~f~~~l---~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~-~Pt~   92 (121)
T 2j23_A           17 VQVISSYDQFKQVT---GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRA-MPTF   92 (121)
T ss_dssp             EEECCSHHHHHHHH---SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCS-SSEE
T ss_pred             eEEcCCHHHHHHHH---cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCc-ccEE
Confidence            3444 458899888   4678999999999999999999999999988765348999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++|++|+.+....|. +.+.|.+|+.+.+
T Consensus        93 ~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           93 VFFKNGQKIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EEEETTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred             EEEECCeEEeeEcCC-CHHHHHHHHHHhh
Confidence            999999987666666 8899999998765

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.62  E-value=7.2e-16  Score=134.26  Aligned_cols=105  Identities=17%  Similarity=0.317  Sum_probs=91.1

Q ss_pred             ccccc-ccccccccccCC-CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770        128 HKLST-THWNFEKNYIPK-SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLP  205 (554)
Q Consensus       128 ~~~~L-t~~~F~~~v~~~-~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~P  205 (554)
                      .+.+| |.++|++.+... ..+++++|.||++||++|+.+.|.++++++.+.  ++.++.||++.+++++++|+|.+ +|
T Consensus        17 ~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~v~~-~P   93 (124)
T 1xfl_A           17 QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDELKSVASDWAIQA-MP   93 (124)
T ss_dssp             CCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTSHHHHHHTTCCS-SS
T ss_pred             cEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECccCHHHHHHcCCCc-cC
Confidence            46666 678898887521 147899999999999999999999999999986  59999999999999999999997 99


Q ss_pred             cceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        206 QIALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       206 ti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      |++++++|+.+....|. +.+.|.+++.+.+
T Consensus        94 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  123 (124)
T 1xfl_A           94 TFMFLKEGKILDKVVGA-KKDELQSTIAKHL  123 (124)
T ss_dssp             EEEEEETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEEEECCEEEEEEeCC-CHHHHHHHHHHhc
Confidence            99999999987766664 7899999998765

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.62  E-value=2.8e-16  Score=140.20  Aligned_cols=106  Identities=13%  Similarity=0.136  Sum_probs=78.5

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEccc--ccccccchHHHHHHHHHhCCCCEE--EEEEEecCcHHHHHHhCCcCC
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDW--CFACLQVEPIFKKLMDELSPLGVG--FFTVHVHNEQGLARRLGVGSQ  203 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~w--C~~C~~l~p~~~~~a~~l~~~~v~--~~~Vd~~~~~~l~~~~~v~~~  203 (554)
                      .+..+|.++|++.+.   ..+.++|.|+++|  |++|+.+.|.|+++++++ + ++.  +++||++++++++++|+|.+ 
T Consensus        18 ~~~~l~~~~f~~~i~---~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~-~v~~~~~~Vd~d~~~~la~~~~V~~-   91 (142)
T 2es7_A           18 GWQPVEASTVDDWIK---RVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P-QFDWQVAVADLEQSEAIGDRFNVRR-   91 (142)
T ss_dssp             TCEECCCC-----------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T-TSCCEEEEECHHHHHHHHHTTTCCS-
T ss_pred             cCcccccccHHHHHH---hCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c-ccceeEEEEECCCCHHHHHhcCCCc-
Confidence            457789999999884   4557889999988  999999999999999998 5 478  99999999999999999997 


Q ss_pred             CCcceeccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        204 LPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       204 ~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      +||+++|++|+.+....|.++.+.|.+++.+.+..+
T Consensus        92 iPT~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l~~~  127 (142)
T 2es7_A           92 FPATLVFTDGKLRGALSGIHPWAELLTLMRSIVDTP  127 (142)
T ss_dssp             SSEEEEESCC----CEESCCCHHHHHHHHHHHHC--
T ss_pred             CCeEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhccc
Confidence            999999999998776666678899999999987765

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.61  E-value=3.7e-17  Score=148.31  Aligned_cols=68  Identities=31%  Similarity=0.465  Sum_probs=59.7

Q ss_pred             CCCCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         17 VSLDPYETLGVPRTAS--LQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~a~--~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ...|+|+||||+++|+  .++||+|||++|+++|||++++   +++|++|++||++|+||.+|+.||.+|...
T Consensus         9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---~e~F~~I~~AYevLsdp~kR~~YD~~G~~w   78 (174)
T 2pf4_E            9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---EEKMKKMNTLYKKMEDGVKYAHQPDFGGFW   78 (174)
T ss_dssp             HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---CTTTTHHHHHHHHHHHHHHHHTSCGGGGCC
T ss_pred             ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---HHHHHHHHHHHHHhCCHHHHHHHhccCCcc
Confidence            3479999999999998  6999999999999999999865   379999999999999999999999999643

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.61  E-value=7.9e-16  Score=149.35  Aligned_cols=108  Identities=24%  Similarity=0.400  Sum_probs=96.2

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCcHHHHHHhCCcCCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNEQGLARRLGVGSQL  204 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~~~l~~~~~v~~~~  204 (554)
                      ..+..++.++|+..+   ..+++++|.||++||++|+.+.|.|+++++.+.+.  ++.++.|||+.++++|++|+|.+ +
T Consensus       130 ~~~~~~~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~-~  205 (241)
T 3idv_A          130 EVTLVLTKENFDEVV---NDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSG-Y  205 (241)
T ss_dssp             CSSEECCTTTHHHHH---HHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCS-S
T ss_pred             ccceeccHHHHHHhh---ccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcc-c
Confidence            356778999999888   35679999999999999999999999999998642  39999999999999999999997 9


Q ss_pred             CcceeccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        205 PQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       205 Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      ||+++|++|+.+.|.|. ++.++|.+|+.+++++.
T Consensus       206 Pt~~~~~~g~~~~~~g~-~~~~~l~~~l~~~~~~~  239 (241)
T 3idv_A          206 PTLKIFRKGRPYDYNGP-REKYGIVDYMIEQSGAA  239 (241)
T ss_dssp             SEEEEEETTEEEECCSC-CSHHHHHHHHHHHTTCT
T ss_pred             CEEEEEECCeEEEecCC-CCHHHHHHHHHhhhCCC
Confidence            99999999998887654 68899999999998765

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.61  E-value=6.8e-16  Score=132.31  Aligned_cols=99  Identities=20%  Similarity=0.298  Sum_probs=84.1

Q ss_pred             cccccc-ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLSTTH-WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~Lt~-~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +..++. ++|++.+   ..+++++|.||++||++|+.+.|.++++++++.+  +.++.||++.+++++++|+|.+ +||+
T Consensus        14 ~~~~~~~~~~~~~~---~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~~~~~l~~~~~v~~-~Pt~   87 (114)
T 2oe3_A           14 ITKLTNLTEFRNLI---KQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVDESPDIAKECEVTA-MPTF   87 (114)
T ss_dssp             SCBCCSHHHHHHHH---HHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTTCHHHHHHTTCCS-BSEE
T ss_pred             eeecCCHHHHHHHH---hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHCCCCc-ccEE
Confidence            445554 4555555   3578999999999999999999999999999875  8999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHH
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRL  234 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~  234 (554)
                      +++++|+.+....|.. .+.|.+++.+
T Consensus        88 ~~~~~G~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           88 VLGKDGQLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EEEETTEEEEEEESSC-HHHHHHHHHT
T ss_pred             EEEeCCeEEEEEeCCC-HHHHHHHHHh
Confidence            9999999876655655 7999998864

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.61  E-value=1.4e-15  Score=147.81  Aligned_cols=102  Identities=18%  Similarity=0.228  Sum_probs=88.7

Q ss_pred             cccccccccccccccccCCCCCCcEEEEEE--cccccccccchHHHHHHHHHhCC--CCEEEEEEEecC-----cHHHHH
Q psy16770        126 LFHKLSTTHWNFEKNYIPKSYTTPHLILFY--SDWCFACLQVEPIFKKLMDELSP--LGVGFFTVHVHN-----EQGLAR  196 (554)
Q Consensus       126 ~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fy--a~wC~~C~~l~p~~~~~a~~l~~--~~v~~~~Vd~~~-----~~~l~~  196 (554)
                      ...++.||..+|++.+   +.++++||.||  ||||+    +.|.|+++|+.+.+  ..+.|++|||+.     ++++|+
T Consensus        15 ~~~v~~Lt~~nF~~vi---~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~   87 (248)
T 2c0g_A           15 CTGCVDLDELSFEKTV---ERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGD   87 (248)
T ss_dssp             CTTCEECCTTTHHHHH---TTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHH
T ss_pred             CCCcEECCHHHHHHHH---hcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHH
Confidence            3458889999999966   46779999999  99999    99999999999853  259999999999     899999


Q ss_pred             HhCCc--CCCCcceeccCCe---EEEE--eCCcccHHHHHHHHHHhCC
Q psy16770        197 RLGVG--SQLPQIALLTDGR---TSFF--KEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       197 ~~~v~--~~~Pti~~~~~g~---~~~y--~~g~~~~~~i~~fl~~~~~  237 (554)
                      +|+|+  + |||+++|+ |+   +..|  .| .++.+.|++|+.+.++
T Consensus        88 ~~~V~~~~-~PTl~~F~-G~~~~~~~y~~~G-~~~~~~L~~fi~~~~~  132 (248)
T 2c0g_A           88 RYKVDDKN-FPSIFLFK-GNADEYVQLPSHV-DVTLDNLKAFVSANTP  132 (248)
T ss_dssp             HTTCCTTS-CCEEEEES-SSSSSEEECCTTS-CCCHHHHHHHHHHHSS
T ss_pred             HhCCCcCC-CCeEEEEe-CCcCcceeecccC-CCCHHHHHHHHHHhhc
Confidence            99999  9 99999999 87   3555  44 4688999999999875

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.60  E-value=5.6e-16  Score=139.60  Aligned_cols=102  Identities=15%  Similarity=0.223  Sum_probs=87.6

Q ss_pred             cccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceecc
Q psy16770        132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLT  211 (554)
Q Consensus       132 Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~  211 (554)
                      .|.++|+..+.. +.+++++|.|||+||++|+.+.|.++++++++.+. +.+++||++++++++++|+|.+ +||+++++
T Consensus         9 ~~~~~~~~~i~~-~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~~~~l~~~~~v~~-~Pt~~~~~   85 (149)
T 3gix_A            9 TSKKEVDQAIKS-TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVDQTAVYTQYFDISY-IPSTVFFF   85 (149)
T ss_dssp             CSHHHHHHHHHH-CCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT-EEEEEEETTTCCHHHHHTTCCS-SSEEEEEE
T ss_pred             CCHHHHHHHHHh-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECCcCHHHHHHcCCCc-cCeEEEEE
Confidence            367788888752 24789999999999999999999999999999763 9999999999999999999997 99999999


Q ss_pred             CCeEE---------EEeCC-cccHHHHHHHHHHhC
Q psy16770        212 DGRTS---------FFKEP-SFSVQKMVEFFRLKL  236 (554)
Q Consensus       212 ~g~~~---------~y~~g-~~~~~~i~~fl~~~~  236 (554)
                      +|+.+         ....| ..+.+.|.+++....
T Consensus        86 ~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~  120 (149)
T 3gix_A           86 NGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY  120 (149)
T ss_dssp             TTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHH
T ss_pred             CCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHH
Confidence            99987         44445 668888888887653

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.60  E-value=2.1e-16  Score=136.13  Aligned_cols=103  Identities=17%  Similarity=0.237  Sum_probs=84.0

Q ss_pred             cccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEE----EecCcHHHHHHhCCc
Q psy16770        126 LFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV----HVHNEQGLARRLGVG  201 (554)
Q Consensus       126 ~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~V----d~~~~~~l~~~~~v~  201 (554)
                      ......+|.++|+..+.   .+++++|.||++||++|+++.|.++++++.+.. .+.++.+    |++..+.++++|+|.
T Consensus        11 ~~~~~~~~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~i~   86 (118)
T 1zma_A           11 IKDLEVTTVVRAQEALD---KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-HIYFINSEEPSQLNDLQAFRSRYGIP   86 (118)
T ss_dssp             TTTSEECCHHHHHHHHH---TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-CCEEEETTCGGGHHHHHHHHHHHTCC
T ss_pred             HhhhhcCCHHHHHHHHh---CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC-eEEEEECCCcCcHHHHHHHHHHcCCC
Confidence            34566788899998873   567999999999999999999999999998863 3555422    223346899999999


Q ss_pred             CCCCcceeccCCeEEEEeCCcccHHHHHHHHH
Q psy16770        202 SQLPQIALLTDGRTSFFKEPSFSVQKMVEFFR  233 (554)
Q Consensus       202 ~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~  233 (554)
                      + +||+++|++|+.+....|..+.+.|.+|+.
T Consensus        87 ~-~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           87 T-VPGFVHITDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             S-SCEEEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             C-CCeEEEEECCEEEEEecCCCCHHHHHHHhh
Confidence            7 999999999998877777778899999885

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.59  E-value=1.3e-16  Score=129.12  Aligned_cols=63  Identities=25%  Similarity=0.357  Sum_probs=56.9

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHcCChHHHH
Q psy16770         16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND--PTAQEKFLQLTEAYNILSDAERRK   78 (554)
Q Consensus        16 ~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~--~~~~~~~~~i~~Ay~~L~~~~~r~   78 (554)
                      ....++|+||||+++|+.++||+|||+|+++||||++++  +.+.++|++|++||++|+|...|.
T Consensus        13 ~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~   77 (88)
T 1iur_A           13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD   77 (88)
T ss_dssp             SCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             ccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence            345789999999999999999999999999999999976  358899999999999999987773

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.59  E-value=5.2e-16  Score=141.58  Aligned_cols=66  Identities=20%  Similarity=0.437  Sum_probs=60.2

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh----HHHHHHHHHHHHHHcCChHHHHhh
Q psy16770         15 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT----AQEKFLQLTEAYNILSDAERRKQY   80 (554)
Q Consensus        15 ~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~----~~~~~~~i~~Ay~~L~~~~~r~~y   80 (554)
                      .+...|+|++|||++.|+.++||+|||+|+++|||||++...    |.++|++|++||++|+|+.+|+.|
T Consensus       113 l~~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          113 LWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             SCTTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             hcCccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            344579999999999999999999999999999999987543    789999999999999999999887

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.59  E-value=6.3e-16  Score=125.25  Aligned_cols=56  Identities=20%  Similarity=0.434  Sum_probs=51.2

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----hHHHHHHHHHHHHHHcCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP----TAQEKFLQLTEAYNILSD   73 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~----~~~~~~~~i~~Ay~~L~~   73 (554)
                      ..++|++|||++.|+.++||+|||+++++|||||+++.    .|+++|+.|++||++|.+
T Consensus        32 ~~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             TCCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            36899999999999999999999999999999998753    378899999999999975

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.37  E-value=1.2e-16  Score=133.99  Aligned_cols=103  Identities=23%  Similarity=0.416  Sum_probs=90.9

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      +.+||.++|.+.+.  +.+++++|.||++||++|+.+.|.++++++.+.+ ++.++.||++.+..++++++|.+ +||++
T Consensus         3 v~~l~~~~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~-~Pt~~   78 (106)
T 2yj7_A            3 VIEVTDENFEQEVL--KSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDENPNTAAQYGIRS-IPTLL   78 (106)
Confidence            56789999998775  4578999999999999999999999999999876 59999999999999999999997 99999


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      ++++|+.+....|..+.+++.+++.+.
T Consensus        79 ~~~~g~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           79 LFKNGQVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            999998776666666788899888764

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.58  E-value=6.3e-16  Score=141.51  Aligned_cols=67  Identities=22%  Similarity=0.374  Sum_probs=60.9

Q ss_pred             CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHHcCChHHHHhhhccCC
Q psy16770         19 LDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPT------AQEKFLQLTEAYNILSDAERRKQYDLFGT   85 (554)
Q Consensus        19 ~d~y~~Lgv~~~a--~~~~ik~ay~~l~~~~hPd~~~~~~------~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~   85 (554)
                      .|||++|||++++  +.++||+|||+|+++||||++++..      |.++|..|++||++|+||.+|+.||....
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~   75 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence            3799999999999  9999999999999999999987532      45789999999999999999999998754

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.57  E-value=2e-15  Score=129.43  Aligned_cols=107  Identities=17%  Similarity=0.310  Sum_probs=90.8

Q ss_pred             cccc-ccccccccccCC-CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        129 KLST-THWNFEKNYIPK-SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       129 ~~~L-t~~~F~~~v~~~-~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      ++.+ +.++|++.+... ..+++++|.||++||++|+.+.|.++++++.+.  ++.++.||++.++.++++|+|.+ +||
T Consensus         8 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~v~~-~Pt   84 (118)
T 2vm1_A            8 VIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDELKDVAEAYNVEA-MPT   84 (118)
T ss_dssp             EEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCS-BSE
T ss_pred             eEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEcccCHHHHHHcCCCc-CcE
Confidence            4555 578898888421 137899999999999999999999999999986  58999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      ++++++|+.+.+..|. +.+.|.+++.+.+...
T Consensus        85 ~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~~~  116 (118)
T 2vm1_A           85 FLFIKDGEKVDSVVGG-RKDDIHTKIVALMGSA  116 (118)
T ss_dssp             EEEEETTEEEEEEESC-CHHHHHHHHHHHHC--
T ss_pred             EEEEeCCeEEEEecCC-CHHHHHHHHHHHhccc
Confidence            9999999987776674 7899999998876543

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.57  E-value=1.8e-15  Score=130.43  Aligned_cols=101  Identities=18%  Similarity=0.226  Sum_probs=86.0

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD  212 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~  212 (554)
                      +..+|++.+.  +++++++|.||++||++|+.+.|.++++++.+ + ++.++.||++.++.++++|+|.+ +||+++|.+
T Consensus        11 ~~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~-~v~~~~vd~~~~~~~~~~~~i~~-~Pt~~~~~~   85 (118)
T 2f51_A           11 THEALLNRIK--EAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-K-DVTFIKVDVDKNGNAADAYGVSS-IPALFFVKK   85 (118)
T ss_dssp             CHHHHHHHHH--HCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T-TSEEEEEETTTCHHHHHHTTCCS-SSEEEEEEE
T ss_pred             CHHHHHHHHH--hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C-CeEEEEEECCCCHHHHHhcCCCC-CCEEEEEeC
Confidence            6778886664  34789999999999999999999999999998 3 59999999999999999999997 999999987


Q ss_pred             ----CeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        213 ----GRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       213 ----g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                          |+.+....|..+ ++|.+.+.+..+++
T Consensus        86 ~~~~G~~~~~~~G~~~-~~l~~~~~~~~~~~  115 (118)
T 2f51_A           86 EGNEIKTLDQFVGADV-SRIKADIEKFKHHH  115 (118)
T ss_dssp             ETTEEEEEEEEESCCH-HHHHHHHHHHC---
T ss_pred             CCCcceEEEeecCCCH-HHHHHHHHHhhhcc
Confidence                888777667644 77999999887764

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.57  E-value=2.3e-15  Score=132.73  Aligned_cols=104  Identities=13%  Similarity=0.248  Sum_probs=87.9

Q ss_pred             ccccccc-ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        128 HKLSTTH-WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       128 ~~~~Lt~-~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      .+++++. ++|+..+. ...+++++|.||++||++|+.+.|.++++++.+   ++.++.||++.+..++++|+|.+ +||
T Consensus        21 ~v~~l~~~~~~~~~l~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~~~~~l~~~~~v~~-~Pt   95 (133)
T 3cxg_A           21 IYIELKNTGSLNQVFS-STQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVDIHPKLNDQHNIKA-LPT   95 (133)
T ss_dssp             EEEECCCTTHHHHHHT-C-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE---ECEEEEEETTTCHHHHHHTTCCS-SSE
T ss_pred             cEEEecChhHHHHHHH-hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc---CEEEEEEeccchHHHHHhcCCCC-CCE
Confidence            4677775 78877664 334679999999999999999999999988876   48999999999999999999997 999


Q ss_pred             ceecc--CCe--EEEEeCCcccHHHHHHHHHHhCC
Q psy16770        207 IALLT--DGR--TSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       207 i~~~~--~g~--~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      +++|+  +|+  .+....|. +.++|.+++.+.+.
T Consensus        96 ~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           96 FEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             EEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             EEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            99996  887  66666666 78999999998764

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.57  E-value=1.4e-15  Score=143.26  Aligned_cols=68  Identities=19%  Similarity=0.278  Sum_probs=60.6

Q ss_pred             CCCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHHcCChHHHHhhhcc
Q psy16770         16 AVSLDPYETLGVPRT--ASLQEIRKNYKRLVVEWHPDKNNDPT------AQEKFLQLTEAYNILSDAERRKQYDLF   83 (554)
Q Consensus        16 ~~~~d~y~~Lgv~~~--a~~~~ik~ay~~l~~~~hPd~~~~~~------~~~~~~~i~~Ay~~L~~~~~r~~yd~~   83 (554)
                      ....|||++|||+++  ++.++||+|||+|++++|||++++..      +.++|+.|++||++|+||.+|+.||..
T Consensus        40 ~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~  115 (207)
T 3bvo_A           40 DPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK  115 (207)
T ss_dssp             CTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            346899999999996  78999999999999999999987432      567899999999999999999999964

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.57  E-value=1.7e-15  Score=133.99  Aligned_cols=102  Identities=12%  Similarity=0.062  Sum_probs=87.2

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+..||.++|++.|...+.+++++|.|||+||++|+.+.|.|+++++.+.  ++.|++||++.+.   ++|+|.+ +||+
T Consensus        11 ~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~~~---~~~~i~~-~Pt~   84 (135)
T 2dbc_A           11 ELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNSCI---EHYHDNC-LPTI   84 (135)
T ss_dssp             SCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSSSC---SSCCSSC-CSEE
T ss_pred             ceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhcCc---ccCCCCC-CCEE
Confidence            36778999999998754445799999999999999999999999999985  5999999999875   7899997 9999


Q ss_pred             eeccCCeEEEEeCCcc-------cHHHHHHHHHHh
Q psy16770        208 ALLTDGRTSFFKEPSF-------SVQKMVEFFRLK  235 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~-------~~~~i~~fl~~~  235 (554)
                      ++|++|+.+....|..       +.+.|..++.+.
T Consensus        85 ~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           85 FVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             EEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence            9999998866655543       678888888876

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.56  E-value=2.2e-15  Score=128.12  Aligned_cols=104  Identities=18%  Similarity=0.361  Sum_probs=89.5

Q ss_pred             cccc-ccccccccccCC-CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        129 KLST-THWNFEKNYIPK-SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       129 ~~~L-t~~~F~~~v~~~-~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      +..+ +.++|++.+... ..+++++|.||++||++|+.+.|.++++++.+.  ++.++.||++.++.++++|+|.+ +||
T Consensus         6 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~-~Pt   82 (113)
T 1ti3_A            6 VIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDELKAVAEEWNVEA-MPT   82 (113)
T ss_dssp             EEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTCHHHHHHHHCSS-TTE
T ss_pred             eeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccccHHHHHhCCCCc-ccE
Confidence            4555 668898887531 247899999999999999999999999999986  59999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++++++|+.+....|. +.+.|.+++.+.+
T Consensus        83 ~~~~~~G~~~~~~~g~-~~~~l~~~l~~~~  111 (113)
T 1ti3_A           83 FIFLKDGKLVDKTVGA-DKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEETTEEEEEEECC-CTTHHHHHHHHHH
T ss_pred             EEEEeCCEEEEEEecC-CHHHHHHHHHHhh
Confidence            9999999987776674 7789999998764

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.56  E-value=2.1e-15  Score=134.61  Aligned_cols=100  Identities=10%  Similarity=0.262  Sum_probs=81.8

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD  212 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~  212 (554)
                      +.++|+..+.. .++++++|.|||+||++|+.+.|.++++++++++ ++.++.||++++++++++|+|.+ +||+++|++
T Consensus        10 ~~~~~~~~v~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~~~~~~~~~i~~-~Pt~~~~~~   86 (142)
T 1qgv_A           10 NGWQVDQAILS-EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEVPDFNKMYELYD-PCTVMFFFR   86 (142)
T ss_dssp             SHHHHHHHHHT-CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTCCTTTTSSCSCS-SCEEEEEET
T ss_pred             CHHHHHHHHHh-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEccccCHHHHHHcCCCC-CCEEEEEEC
Confidence            56788877752 1478999999999999999999999999999976 49999999999999999999997 999999999


Q ss_pred             CeEEEEeCC---------cc-cHHHHHHHHHHh
Q psy16770        213 GRTSFFKEP---------SF-SVQKMVEFFRLK  235 (554)
Q Consensus       213 g~~~~y~~g---------~~-~~~~i~~fl~~~  235 (554)
                      |+.+....|         .. +.+++.+++.+.
T Consensus        87 G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~  119 (142)
T 1qgv_A           87 NKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  119 (142)
T ss_dssp             TEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             CcEEEEecCCCCcceeeeecCcHHHHHHHHHHH
Confidence            988753222         12 356666666544

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.55  E-value=7.2e-14  Score=136.28  Aligned_cols=183  Identities=11%  Similarity=0.143  Sum_probs=129.7

Q ss_pred             CCCcEEEEEEccc--ccccccchHHHHHHHHHh---CCCC-EEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEe
Q psy16770        146 YTTPHLILFYSDW--CFACLQVEPIFKKLMDEL---SPLG-VGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFK  219 (554)
Q Consensus       146 ~~~~~lV~Fya~w--C~~C~~l~p~~~~~a~~l---~~~~-v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~  219 (554)
                      -.++++|.||++|  |++|+.+.|.++++|+..   ++.. +.|+++|+++++++|++|||++ +||+++| +| ...|.
T Consensus        24 ~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~-~Pt~~i~-~g-~~~~~  100 (243)
T 2hls_A           24 MVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVER-VPTVAFL-GG-EVRWT  100 (243)
T ss_dssp             CCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCS-SSEEEET-TT-TEEEE
T ss_pred             CCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCc-CCEEEEE-CC-ceeEc
Confidence            4579999999999  999999999999999884   2211 9999999999999999999997 9999999 67 66676


Q ss_pred             CCcccHHHHHHHHHHhC---CCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----Hhhcc----CCc
Q psy16770        220 EPSFSVQKMVEFFRLKL---PYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKH----RTT  287 (554)
Q Consensus       220 ~g~~~~~~i~~fl~~~~---~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~----~~~  287 (554)
                      |.. ..+.+..|+...+   +..  ..++++..+... ..  ..++.++.|....-+......     .+..+    .+.
T Consensus       101 G~~-~~~~l~~fv~~~l~~~~~~--~~l~~~~~~~~~-~~--~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~  174 (243)
T 2hls_A          101 GIP-AGEEIRALVEVIMRLSEDE--SGLEDATKEALK-SL--KGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPV  174 (243)
T ss_dssp             SCC-CTTHHHHHHHHHHHHHTTC--CCCCHHHHHHHH-HC--CSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCC-cHHHHHHHHHHHHhccCCC--CCCCHHHHHHHH-Hc--CCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCc
Confidence            654 5577888877643   221  123444444432 21  355656655332222222111     11222    167


Q ss_pred             eEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        288 IVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       288 v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +.++.++++  .+++++++|+|.+ .||+++  + .+    .++.|..+.+.|.++|...
T Consensus       175 v~~~~vd~~--~~~~~~~~~~V~~-vPt~~i--~-G~----~~~~G~~~~~~l~~~l~~~  224 (243)
T 2hls_A          175 ILSEAVEAY--ENPDIADKYGVMS-VPSIAI--N-GY----LVFVGVPYEEDFLDYVKSA  224 (243)
T ss_dssp             EEEEEEETT--TCHHHHHHTTCCS-SSEEEE--T-TE----EEEESCCCHHHHHHHHHHH
T ss_pred             EEEEEEECc--cCHHHHHHcCCee-eCeEEE--C-CE----EEEeCCCCHHHHHHHHHHH
Confidence            999999987  6789999999997 999988  2 22    2477888888898888754

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.55  E-value=1e-15  Score=128.37  Aligned_cols=60  Identities=22%  Similarity=0.212  Sum_probs=53.4

Q ss_pred             cCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--------hHHHHHHHHHHHHHHcCChH
Q psy16770         15 CAVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDP--------TAQEKFLQLTEAYNILSDAE   75 (554)
Q Consensus        15 ~~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~--------~~~~~~~~i~~Ay~~L~~~~   75 (554)
                      .....|+|+|||+++ ||.++||+|||+++++|||||++++        .|+++|++|++||++|+|+.
T Consensus        37 l~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           37 LWSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             SCTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hcccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            455689999999996 9999999999999999999998632        36889999999999999985

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.55  E-value=2.2e-15  Score=133.53  Aligned_cols=105  Identities=14%  Similarity=0.210  Sum_probs=90.1

Q ss_pred             cccc-ccccccccccCC-CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        129 KLST-THWNFEKNYIPK-SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       129 ~~~L-t~~~F~~~v~~~-~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      +..+ +.++|++.+... ..+++++|.||++||++|+.+.|.++++++.+.  ++.++.||++.++.++++|+|.+ +||
T Consensus        26 ~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~~~~~~~~~~~~v~~-~Pt  102 (139)
T 3d22_A           26 VHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDELSDFSASWEIKA-TPT  102 (139)
T ss_dssp             CEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCE-ESE
T ss_pred             EEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCcccHHHHHHcCCCc-ccE
Confidence            4455 478998877421 247799999999999999999999999999985  58999999999999999999998 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      ++++++|+.+....|. +.++|.+++.+.++
T Consensus       103 ~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~  132 (139)
T 3d22_A          103 FFFLRDGQQVDKLVGA-NKPELHKKITAILD  132 (139)
T ss_dssp             EEEEETTEEEEEEESC-CHHHHHHHHHHHHH
T ss_pred             EEEEcCCeEEEEEeCC-CHHHHHHHHHHHhc
Confidence            9999999988776676 77999999987754

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.55  E-value=7.7e-15  Score=142.16  Aligned_cols=101  Identities=16%  Similarity=0.143  Sum_probs=88.1

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEc--ccccccccchHHHHHHHHHhCC-CCEEEEEEE-----ecCcHHHHHHh
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYS--DWCFACLQVEPIFKKLMDELSP-LGVGFFTVH-----VHNEQGLARRL  198 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya--~wC~~C~~l~p~~~~~a~~l~~-~~v~~~~Vd-----~~~~~~l~~~~  198 (554)
                      ..++.||..+|++.|   ..+++++|.|||  |||+    +.|.|+++++.+.+ .++.|++||     |+.++++|++|
T Consensus         5 ~~v~~Lt~~nF~~~i---~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~   77 (240)
T 2qc7_A            5 KGALPLDTVTFYKVI---PKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKY   77 (240)
T ss_dssp             TTCEECCTTHHHHHG---GGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHT
T ss_pred             CCceECCHHHHHHHH---cCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHc
Confidence            357889999999977   356799999999  9999    99999999999974 359999999     56699999999


Q ss_pred             CCc--CCCCcceeccCCe---EEEEeCCcccHHHHHHHHHHhC
Q psy16770        199 GVG--SQLPQIALLTDGR---TSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       199 ~v~--~~~Pti~~~~~g~---~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +|+  + |||+++|++|+   +..|. |.++.+.|++|+.+..
T Consensus        78 ~V~~~~-~PTl~~f~~G~~~~~~~y~-G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           78 KLDKES-YPVFYLFRDGDFENPVPYT-GAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             TCCGGG-CSEEEEEETTCSSCCEECC-SCSCHHHHHHHHHHTT
T ss_pred             CCCCCC-CCEEEEEeCCCcCcceeec-CCCCHHHHHHHHHHhc
Confidence            999  9 99999999998   45555 5568899999999884

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.53  E-value=1.3e-14  Score=139.49  Aligned_cols=105  Identities=13%  Similarity=0.087  Sum_probs=89.1

Q ss_pred             cccccccccccccccCCCCCCcE-EEEEEcccccccccchHHHHHHHHHhCC---CCEEEEEEEecCcHHHHHHhCCcCC
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPH-LILFYSDWCFACLQVEPIFKKLMDELSP---LGVGFFTVHVHNEQGLARRLGVGSQ  203 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~-lV~Fya~wC~~C~~l~p~~~~~a~~l~~---~~v~~~~Vd~~~~~~l~~~~~v~~~  203 (554)
                      ....|+.++|+...   ..++++ +|.|||+||++|+++.|.|+++++.+.+   .++.++.||++.++.+|++|+|.+ 
T Consensus       117 ~~~~l~~~~~~~~~---~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~-  192 (226)
T 1a8l_A          117 EETNLMDETKQAIR---NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMA-  192 (226)
T ss_dssp             TCCCCCHHHHHHHT---TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCS-
T ss_pred             CCCCCCHHHHHHHH---hcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcc-
Confidence            35567888887765   344566 9999999999999999999999999861   259999999999999999999997 


Q ss_pred             CCcceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        204 LPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       204 ~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +||+++|++|+....+.|.++.+.|.+|+.+.+
T Consensus       193 ~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          193 VPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             SCEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             cCeEEEEeCCceeEEEcCCCCHHHHHHHHHHhh
Confidence            999999999987766666678899999998753

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.52  E-value=3.4e-15  Score=137.56  Aligned_cols=69  Identities=32%  Similarity=0.463  Sum_probs=61.9

Q ss_pred             ccCCCCCccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccC
Q psy16770         14 NCAVSLDPYETL------GVPR-TASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFG   84 (554)
Q Consensus        14 ~~~~~~d~y~~L------gv~~-~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~   84 (554)
                      ++....|||+||      |+++ +++.++||+|||+|+++||||++++  +.++|+.|++||++|+||.+|+.||...
T Consensus         6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            566778999999      4665 8999999999999999999999875  7789999999999999999999999844

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.51  E-value=2.3e-15  Score=117.11  Aligned_cols=57  Identities=18%  Similarity=0.299  Sum_probs=51.5

Q ss_pred             CCCcccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHH
Q psy16770         18 SLDPYETLGVPR-TASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERR   77 (554)
Q Consensus        18 ~~d~y~~Lgv~~-~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r   77 (554)
                      ..++|+||||++ +++.++||+|||+|+++||||++.   +.++|++|++||++|+++..|
T Consensus        13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g---~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG---SPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC---CHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHhhhhhc
Confidence            468999999999 799999999999999999999974   457999999999999998655

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.51  E-value=2.9e-13  Score=130.53  Aligned_cols=201  Identities=15%  Similarity=0.208  Sum_probs=147.7

Q ss_pred             ccccc-ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        128 HKLST-THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       128 ~~~~L-t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      ..++| |.++|++.+   +.+++++|.|+++|   |..+.+.|.++|+.+.  .+.|+.   +.++++|+++++++  |+
T Consensus        10 ~~~~l~s~~~~~~~l---~~~~v~vVgff~~~---~~~~~~~f~~~A~~l~--~~~F~~---t~~~~v~~~~~v~~--p~   76 (227)
T 4f9z_D           10 EPTWLTDVPAAMEFI---AATEVAVIGFFQDL---EIPAVPILHSMVQKFP--GVSFGI---STDSEVLTHYNITG--NT   76 (227)
T ss_dssp             CCEECCSHHHHHHHH---HTSSEEEEEECSCS---CSTHHHHHHHHTTTCT--TSEEEE---ECCHHHHHHTTCCS--SE
T ss_pred             CCeeeCCHHHHHHHH---hcCCeEEEEEecCC---CchhHHHHHHHHHhCC--CceEEE---ECCHHHHHHcCCCC--Ce
Confidence            34455 668999887   46789999999998   5789999999999994  588876   45789999999984  99


Q ss_pred             ceeccCC--eEEEEeC---CcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCch---hHH--
Q psy16770        207 IALLTDG--RTSFFKE---PSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPV---RLR--  276 (554)
Q Consensus       207 i~~~~~g--~~~~y~~---g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~---~~~--  276 (554)
                      |++|+++  ....|.|   |.++.++|.+|+.....|. +..+|.+++.++++.   ..+.++++|.+....   .+.  
T Consensus        77 i~lfk~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~pl-v~e~t~~n~~~~~~~---~~~~~~l~f~~~~~~~~~~~~~~  152 (227)
T 4f9z_D           77 ICLFRLVDNEQLNLEDEDIESIDATKLSRFIEINSLHM-VTEYNPVTVIGLFNS---VIQIHLLLIMNKASPEYEENMHR  152 (227)
T ss_dssp             EEEEETTTTEEEEECHHHHHTCCHHHHHHHHHHHCCCS-EEECCHHHHHHHHHS---SCCEEEEEEECTTSTTHHHHHHH
T ss_pred             EEEEEecCcccccccccccCCCCHHHHHHHHHHhCCCc-eeecCcccHHHHhcc---CCceEEEEEEcCCcchHHHHHHH
Confidence            9999763  4567765   3468899999999998877 788899998888742   344555667543222   222  


Q ss_pred             HHHHhhccCCceEEEEEEccCCCChhHHhHhCCCC-CCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        277 YLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPG-DKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       277 ~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~-~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +...|-.+++++.|++++++......+++.||++. ..|++++++...... .....++++.+.|.+|++.
T Consensus       153 ~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~k-y~~~~~~~t~~~i~~Fv~~  222 (227)
T 4f9z_D          153 YQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEW-DTLPTAEVSVEHVQNFCDG  222 (227)
T ss_dssp             HHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSSCCE-EEETTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCCCcc-ccCCcCCCCHHHHHHHHHH
Confidence            22223378889999999986333556889999982 489999998543211 1222467899999999874

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.50  E-value=4.7e-15  Score=141.93  Aligned_cols=104  Identities=15%  Similarity=0.159  Sum_probs=89.5

Q ss_pred             ccccc-ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        128 HKLST-THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       128 ~~~~L-t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      .+.+| +.++|.+.|...+.+++++|.||++||++|+.+.|.|.++++.+.  ++.|++||++ ++.++.+|+|.+ +||
T Consensus       100 ~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~-~~~l~~~~~i~~-~PT  175 (217)
T 2trc_P          100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS-NTGAGDRFSSDV-LPT  175 (217)
T ss_dssp             SEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHH-HHTCSTTSCGGG-CSE
T ss_pred             eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEEECC-cHHHHHHCCCCC-CCE
Confidence            36677 889999988644455899999999999999999999999999985  5999999999 888999999998 999


Q ss_pred             ceeccCCeEEEEeCCcccH-------HHHHHHHHHh
Q psy16770        207 IALLTDGRTSFFKEPSFSV-------QKMVEFFRLK  235 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~-------~~i~~fl~~~  235 (554)
                      +++|++|+.+....|..+.       ++|..|+.+.
T Consensus       176 l~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          176 LLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             EEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             EEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            9999999987776676553       7888888754

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=8e-15  Score=128.17  Aligned_cols=109  Identities=10%  Similarity=0.259  Sum_probs=89.3

Q ss_pred             ccccccccccccccCC-CCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEec--CcHHHHHHhCCcC
Q psy16770        129 KLSTTHWNFEKNYIPK-SYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVH--NEQGLARRLGVGS  202 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~-~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~--~~~~l~~~~~v~~  202 (554)
                      .+.++..+|++.+... ..+++++|.||++||++|+.+.|.+   +++++.++. ++.++.||++  .+..+|++|+|.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~v~~   86 (130)
T 2kuc_A            8 GIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR-HFVNLKMDMEKGEGVELRKKYGVHA   86 (130)
T ss_dssp             CCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHH-HSEEEEECSSSTTHHHHHHHTTCCS
T ss_pred             CCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhc-CeEEEEEecCCcchHHHHHHcCCCC
Confidence            4556778888776311 2467999999999999999999999   777776654 4889999998  5789999999997


Q ss_pred             CCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        203 QLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       203 ~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                       +||++++ ++|+.+....|..+.+.|.+++.+.+.+.
T Consensus        87 -~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  123 (130)
T 2kuc_A           87 -YPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESE  123 (130)
T ss_dssp             -SCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSCC
T ss_pred             -CCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHhc
Confidence             9999999 78988766556668899999999887654

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.50  E-value=4.1e-15  Score=129.88  Aligned_cols=108  Identities=17%  Similarity=0.322  Sum_probs=92.0

Q ss_pred             ccccc-ccccccccccC-CCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770        128 HKLST-THWNFEKNYIP-KSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLP  205 (554)
Q Consensus       128 ~~~~L-t~~~F~~~v~~-~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~P  205 (554)
                      .+..+ +.++|++.+.. +..+++++|.||++||++|+.+.|.++++++.+.  ++.++.||++.++.++++|+|.+ +|
T Consensus        15 ~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~~~~~~~~~v~~-~P   91 (130)
T 1wmj_A           15 VVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDELKEVAEKYNVEA-MP   91 (130)
T ss_dssp             SSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTTSGGGHHHHTCCS-SC
T ss_pred             ceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccchHHHHHHcCCCc-cc
Confidence            35566 46888888753 1247899999999999999999999999999986  58999999999999999999997 99


Q ss_pred             cceeccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        206 QIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       206 ti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      |++++++|+.+....|. +.+.|.+++.+.+...
T Consensus        92 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~~~~  124 (130)
T 1wmj_A           92 TFLFIKDGAEADKVVGA-RKDDLQNTIVKHVGAT  124 (130)
T ss_dssp             CCCBCTTTTCCBCCCTT-CTTTHHHHHHHHTSSS
T ss_pred             eEEEEeCCeEEEEEeCC-CHHHHHHHHHHHHhcc
Confidence            99999999887766674 7789999999887543

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.48  E-value=5.3e-14  Score=113.02  Aligned_cols=83  Identities=20%  Similarity=0.359  Sum_probs=73.4

Q ss_pred             CcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHH
Q psy16770        148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQK  227 (554)
Q Consensus       148 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~  227 (554)
                      .+.+|.||++||++|+++.|.++++++++.+ ++.+..||+++++++++++||.+ +||+++  +|+. .+. |..+.+.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~-~Pt~~~--~G~~-~~~-G~~~~~~   76 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVMENPQKAMEYGIMA-VPTIVI--NGDV-EFI-GAPTKEA   76 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESSSSCCTTTSTTTCC-SSEEEE--TTEE-ECC-SSSSSHH
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC-ceEEEEEECCCCHHHHHHCCCcc-cCEEEE--CCEE-eee-cCCCHHH
Confidence            3679999999999999999999999999875 59999999999999999999997 999998  8887 455 4457899


Q ss_pred             HHHHHHHhC
Q psy16770        228 MVEFFRLKL  236 (554)
Q Consensus       228 i~~fl~~~~  236 (554)
                      |.+++.+.+
T Consensus        77 l~~~l~~~l   85 (85)
T 1fo5_A           77 LVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999998753

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.47  E-value=5.6e-14  Score=123.40  Aligned_cols=88  Identities=19%  Similarity=0.472  Sum_probs=78.7

Q ss_pred             CCCcEEEEEEcccccccccchHHHH--HHHHHhCCCCEEEEEEEe---cCcHHHHHHhCC---cCCCCcceec-cCCeEE
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFK--KLMDELSPLGVGFFTVHV---HNEQGLARRLGV---GSQLPQIALL-TDGRTS  216 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~--~~a~~l~~~~v~~~~Vd~---~~~~~l~~~~~v---~~~~Pti~~~-~~g~~~  216 (554)
                      .+++++|.||++||++|+.+.|.++  ++++.+++ ++.++.||+   +.+..++++|+|   .+ +||+++| ++|+.+
T Consensus        28 ~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~~~~~~~l~~~~~v~~~~~-~Pt~~~~d~~G~~~  105 (133)
T 3fk8_A           28 THKPTLLVFGANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGNFDRNLELSQAYGDPIQDG-IPAVVVVNSDGKVR  105 (133)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTTTTSSHHHHHHTTCGGGGC-SSEEEEECTTSCEE
T ss_pred             cCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCcccchHHHHHHhCCccCCc-cceEEEECCCCCEE
Confidence            5789999999999999999999999  99998865 599999999   899999999999   97 9999999 899988


Q ss_pred             EEeCC-------cccHHHHHHHHHHh
Q psy16770        217 FFKEP-------SFSVQKMVEFFRLK  235 (554)
Q Consensus       217 ~y~~g-------~~~~~~i~~fl~~~  235 (554)
                      ....|       ..+.+.+.+|+.+.
T Consensus       106 ~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A          106 YTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             EECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             EEecCCcccccccCCHHHHHHHHHHh
Confidence            77666       56778888888764

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.46  E-value=2e-14  Score=139.65  Aligned_cols=104  Identities=16%  Similarity=0.174  Sum_probs=87.5

Q ss_pred             ccccc-ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        128 HKLST-THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       128 ~~~~L-t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      .+..| +.++|...|...+.+++++|.|||+||++|+.+.|.|.++++.+.  ++.|++||++. ..++.+|+|.+ +||
T Consensus       113 ~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~--~v~f~kVd~d~-~~l~~~~~I~~-~PT  188 (245)
T 1a0r_P          113 FVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP--MVKFCKIKASN-TGAGDRFSSDV-LPT  188 (245)
T ss_dssp             SEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT--TSEEEEEEHHH-HCCTTSSCTTT-CSE
T ss_pred             eEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--CCEEEEEeCCc-HHHHHHCCCCC-CCE
Confidence            36677 789999998644457899999999999999999999999999986  48999999987 77899999997 999


Q ss_pred             ceeccCCeEEEEeCCc-------ccHHHHHHHHHHh
Q psy16770        207 IALLTDGRTSFFKEPS-------FSVQKMVEFFRLK  235 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~-------~~~~~i~~fl~~~  235 (554)
                      +++|++|+.+....|.       .+.+.|..|+.+.
T Consensus       189 ll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          189 LLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             EEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             EEEEECCEEEEEEeCCcccccccccHHHHHHHHHHc
Confidence            9999999887665443       2456788888765

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.45  E-value=7.3e-14  Score=112.19  Aligned_cols=82  Identities=17%  Similarity=0.261  Sum_probs=73.1

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHH
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKM  228 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i  228 (554)
                      +.+|.||++||++|+++.|.++++++++.+ ++.+..||+++++++++++||.+ +||+++  +|+. .+.|. .+.+.|
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~-~Pt~~~--~G~~-~~~G~-~~~~~l   76 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVDREKAIEYGLMA-VPAIAI--NGVV-RFVGA-PSREEL   76 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTCGGGGGGTCSSC-SSEEEE--TTTE-EEECS-SCCHHH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECCCCHHHHHhCCcee-eCEEEE--CCEE-EEccC-CCHHHH
Confidence            468999999999999999999999999986 59999999999999999999997 999998  8887 55654 577999


Q ss_pred             HHHHHHhC
Q psy16770        229 VEFFRLKL  236 (554)
Q Consensus       229 ~~fl~~~~  236 (554)
                      .+++.+.+
T Consensus        77 ~~~l~~~l   84 (85)
T 1nho_A           77 FEAINDEM   84 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99998765

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.44  E-value=3.9e-14  Score=124.87  Aligned_cols=103  Identities=19%  Similarity=0.377  Sum_probs=82.9

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEe----cCcHHHHHHhCCcCCCC
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHV----HNEQGLARRLGVGSQLP  205 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~----~~~~~l~~~~~v~~~~P  205 (554)
                      +.++|+..+.. ..+++++|.||++||++|+.+.|.+   .++++.++  ++.++.||+    +.+..++++|+|.+ +|
T Consensus        18 ~~~~~~~~l~~-~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~~~~~~~~l~~~~~v~~-~P   93 (134)
T 2fwh_A           18 TVDELNQALVE-AKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTANDAQDVALLKHLNVLG-LP   93 (134)
T ss_dssp             SHHHHHHHHHH-HTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCCHHHHHHHHHTTCCS-SS
T ss_pred             CHHHHHHHHHH-hcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCCCcchHHHHHHHcCCCC-CC
Confidence            45666666532 1378999999999999999999999   89999886  489999999    56789999999997 99


Q ss_pred             cceec-cCCeEE--EEeCCcccHHHHHHHHHHhCCCC
Q psy16770        206 QIALL-TDGRTS--FFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       206 ti~~~-~~g~~~--~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      |++++ ++|+.+  ....|..+.++|.+++.+.-+.+
T Consensus        94 t~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~~~  130 (134)
T 2fwh_A           94 TILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQPHH  130 (134)
T ss_dssp             EEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC----
T ss_pred             EEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcCccc
Confidence            99999 899886  34556678899999998776543

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.44  E-value=9.3e-14  Score=120.55  Aligned_cols=102  Identities=17%  Similarity=0.309  Sum_probs=85.8

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcc-------cccccccchHHHHHHHHHhCCCCEEEEEEEe-------cCcHHH
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSD-------WCFACLQVEPIFKKLMDELSPLGVGFFTVHV-------HNEQGL  194 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~-------wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~-------~~~~~l  194 (554)
                      +...+.++|++.+... .+++++|.|||+       ||++|+.+.|.++++++.+.+ ++.++.||+       +.+..+
T Consensus         7 v~~~~~~~~~~~~~~~-~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~~~~d~~~~~   84 (123)
T 1wou_A            7 VSVSGFEEFHRAVEQH-NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKPYWKDPNNDF   84 (123)
T ss_dssp             EEEESHHHHHHHHHTT-TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHHHHHCTTCHH
T ss_pred             EEeccHHHHHHHHHHh-CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECCCchhhhchhHHH
Confidence            4556788999888532 478999999999       999999999999999999876 599999999       789999


Q ss_pred             HHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHH
Q psy16770        195 ARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRL  234 (554)
Q Consensus       195 ~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~  234 (554)
                      +++|+|.+ +||+++|.+|.......+ .+.+.|.+|+.+
T Consensus        85 ~~~~~i~~-~Pt~~~~~~~~~~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           85 RKNLKVTA-VPTLLKYGTPQKLVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             HHHHCCCS-SSEEEETTSSCEEEGGGG-GCHHHHHHHHHC
T ss_pred             HHHCCCCe-eCEEEEEcCCceEecccc-CCHHHHHHHHhc
Confidence            99999997 999999988766554444 366888888764

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.41  E-value=1.9e-11  Score=131.12  Aligned_cols=309  Identities=13%  Similarity=0.115  Sum_probs=202.3

Q ss_pred             cccc-ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLST-THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~L-t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +..+ +.+++++.+   +.++.++|.||.++|..|   .+.|.++|..+.+ .+.|+.+   .+..+++++++.. .| +
T Consensus       112 ~~~i~~~~~~~~~~---~~~~~~vv~~~~~~~~~~---~~~f~~~a~~~~~-~~~F~~~---~~~~~~~~~~v~~-~~-i  179 (481)
T 3f8u_A          112 SVPLRTEEEFKKFI---SDKDASIVGFFDDSFSEA---HSEFLKAASNLRD-NYRFAHT---NVESLVNEYDDNG-EG-I  179 (481)
T ss_dssp             EEEECSHHHHHHHT---TSSSCEEEEEESCTTCHH---HHHHHHHHHHHTT-TSCEEEE---CCHHHHHHHCSSS-EE-E
T ss_pred             ceecCCHHHHHHHH---hcCCcEEEEEECCCccch---HHHHHHHHHHhcc-CceEEEE---CCHHHHHHhCCCC-Cc-E
Confidence            4444 566777777   456788999999886654   6789999999976 4788865   4778999999986 55 7


Q ss_pred             eecc--------CCeEEEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecC--Cchh---
Q psy16770        208 ALLT--------DGRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRS--LPVR---  274 (554)
Q Consensus       208 ~~~~--------~g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~--~~~~---  274 (554)
                      ++|+        ++....|.||..+.+.|.+|+....-|. +..+|.+++..+..     ....++++...  ....   
T Consensus       180 ~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~p~-v~e~t~~n~~~~~~-----~~~~v~~~~~~~~~~~~~~~  253 (481)
T 3f8u_A          180 ILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGI-CPHMTEDNKDLIQG-----KDLLIAYYDVDYEKNAKGSN  253 (481)
T ss_dssp             EEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTTTT-SCEECTTTHHHHTT-----SSEEEEEECCCTTTCHHHHH
T ss_pred             EEEecccccCccCCcccccCCCCCCHHHHHHHHHHhCCCC-ccccChhHHHHhcC-----CCceEEEEecccccchhhHH
Confidence            7777        4566778767778999999999988776 67788888887762     22333333221  1111   


Q ss_pred             -HHHH--HHhhccCCc---eEEEEEEccCCCChhHHhHhCCCC---CCceEEEEeCCCCCCCceeecCCCChh--HHHhH
Q psy16770        275 -LRYL--INAFKHRTT---IVFGVIVYDQEDSSSVFQRFKVPG---DKDSLLIFKEDKDRPSASITMNSIPVP--TLQDI  343 (554)
Q Consensus       275 -~~~~--~~a~~~~~~---v~Fg~v~~~~~~~~~l~~k~~i~~---~~Ptlvvfk~~~~~~~~~i~~~~~~~~--~l~~f  343 (554)
                       ++..  ..|..+++.   +.|+.++..  .....++.||++.   ..|.++++..+..   .+...+.++.+  .|.+|
T Consensus       254 ~~~~~~~~vA~~~~~k~~~i~F~~~D~~--~~~~~l~~~gl~~~~~~~P~~~i~~~~~~---ky~~~~~~t~e~~~l~~f  328 (481)
T 3f8u_A          254 YWRNRVMMVAKKFLDAGHKLNFAVASRK--TFSHELSDFGLESTAGEIPVVAIRTAKGE---KFVMQEEFSRDGKALERF  328 (481)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCEEEEEETT--TTHHHHGGGTCCCCTTCSCEEEEECSSSC---EEECCSCCCTTSHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEEcHH--HHHHHHHHcCCCcccCCCcEEEEEcCCCc---ccCCCcccCccHHHHHHH
Confidence             1111  123355555   999999876  5677888999972   4899999863222   23444677777  89999


Q ss_pred             HhcCC------------C-----cccccccchhhhhhcCCCCceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCC-ceE
Q psy16770        344 TDNNP------------Y-----LTLPRISSQSMLDAVCPVKKLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHN-NIA  404 (554)
Q Consensus       344 i~~~~------------~-----~~v~~lt~~~~~~~~c~~~~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~-~v~  404 (554)
                      ++...            .     ..+..++..++.+..-..++..+|.|. +....+....+.+.++++.  +++. .+.
T Consensus       329 ~~~~~~g~~~~~~~s~~~p~~~~~~v~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~--~~~~~~v~  406 (481)
T 3f8u_A          329 LQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEK--LSKDPNIV  406 (481)
T ss_dssp             HHHHHHTCCCCCCCCCCCCSCCCSSSEEECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHH--TTTCSSEE
T ss_pred             HHHHhcCCcccccccCCCCCCCCCCeEEecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHH--hccCCCEE
Confidence            86521            1     123344545554444323455555555 5556777788899999998  7653 699


Q ss_pred             EEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCCe-eEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770        405 FMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKI-KYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN  480 (554)
Q Consensus       405 F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~  480 (554)
                      |+.+|++.. +++..+       . ..++|.+......+. .-..+.|         ..+.+.|.+||++.......
T Consensus       407 ~~~id~~~~-~~~~~~-------~-v~~~Pt~~~~~~~~~~~~~~~~G---------~~~~~~l~~~l~~~~~~~~~  465 (481)
T 3f8u_A          407 IAKMDATAN-DVPSPY-------E-VRGFPTIYFSPANKKLNPKKYEG---------GRELSDFISYLQREATNPPV  465 (481)
T ss_dssp             EEEEETTSS-CCCTTC-------C-CCSSSEEEEECTTCTTSCEECCS---------CCSHHHHHHHHHHHCSSCCC
T ss_pred             EEEEECCch-hhHhhC-------C-CcccCEEEEEeCCCeEeeeEeCC---------CCCHHHHHHHHHHhcCCccc
Confidence            999999764 444433       1 124554433333322 1222344         35789999999998776654

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.41  E-value=2.1e-14  Score=151.07  Aligned_cols=106  Identities=19%  Similarity=0.242  Sum_probs=84.4

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC-------CEEEEEEEecCcHHHHHHhC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL-------GVGFFTVHVHNEQGLARRLG  199 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~-------~v~~~~Vd~~~~~~l~~~~~  199 (554)
                      ..++.||.++|+..+.. +.+++++|+|||+||++|+.+.|.|+++++.+...       .+.|++|||+.++++|++|+
T Consensus        23 ~~V~~Lt~~~F~~~l~~-~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~  101 (470)
T 3qcp_A           23 SSVVDLSGDDFSRVHRV-APLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYD  101 (470)
T ss_dssp             TTEEECSCSCGGGTCTT-GGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTT
T ss_pred             CCcEECCHHHHHHHHHh-CCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcC
Confidence            35888999999988853 34579999999999999999999999999999732       39999999999999999999


Q ss_pred             CcCCCCcceeccCCe---EEEEeCCcccHHHHHHHHHHhC
Q psy16770        200 VGSQLPQIALLTDGR---TSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       200 v~~~~Pti~~~~~g~---~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      |.+ +||+++|.+|.   ...|.|+ ++.+.| .|+.+++
T Consensus       102 V~~-~PTlilf~~gg~~~~~~y~G~-r~~e~L-~fI~k~l  138 (470)
T 3qcp_A          102 INF-VPRLFFFYPRDSCRSNEECGT-SSLEHV-AFENSHL  138 (470)
T ss_dssp             CCS-SCEEEEEEESSCCCTTSCCCC-CCEEEE-ECSCTTC
T ss_pred             CCc-cCeEEEEECCCceEEEEeeCC-CCHHHH-HHHHHhc
Confidence            997 99999996443   3344443 354554 4444443

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.39  E-value=1.2e-13  Score=149.18  Aligned_cols=107  Identities=17%  Similarity=0.340  Sum_probs=91.0

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhC--CCCEEEEEEEecCcHHHHHHhCCcCCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS--PLGVGFFTVHVHNEQGLARRLGVGSQL  204 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~--~~~v~~~~Vd~~~~~~l~~~~~v~~~~  204 (554)
                      ..+..|+.++|+..+.  +.+++++|.||||||++|+.+.|.|+++++.+.  ..++.+++|||+.+... . ++|.+ +
T Consensus       358 ~~v~~l~~~~f~~~v~--~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~-~  432 (504)
T 2b5e_A          358 SSVFQLVGKNHDEIVN--DPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEG-Y  432 (504)
T ss_dssp             CSEEEECTTTHHHHHH--CTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSS-S
T ss_pred             ccceecccccHHHhhc--cCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCcee-c
Confidence            4578899999999885  457899999999999999999999999999886  23599999999987654 4 99998 9


Q ss_pred             CcceeccCCeE---EEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        205 PQIALLTDGRT---SFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       205 Pti~~~~~g~~---~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      ||+++|++|+.   ..|. |.++.++|.+|+.+.+...
T Consensus       433 Pt~~~~~~G~~~~~~~~~-G~~~~~~l~~~i~~~~~~~  469 (504)
T 2b5e_A          433 PTIVLYPGGKKSESVVYQ-GSRSLDSLFDFIKENGHFD  469 (504)
T ss_dssp             SEEEEECCTTSCCCCBCC-SCCCHHHHHHHHHHHCTTC
T ss_pred             CeEEEEeCCceecceEec-CCCCHHHHHHHHHhcCCCC
Confidence            99999998864   4455 5568999999999997655

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.38  E-value=4.7e-13  Score=128.99  Aligned_cols=100  Identities=13%  Similarity=0.139  Sum_probs=85.0

Q ss_pred             cccccccccccccccCCCCCCcE-EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPH-LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~-lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      .+..|+.++|+..+   +.++++ +|.||++||++|+.+.|.|+++++.+ + ++.++.||++.++++|++|+|.+ +||
T Consensus       119 ~~~~l~~~~~~~~~---~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~-~-~v~~~~vd~~~~~~l~~~~~v~~-~Pt  192 (229)
T 2ywm_A          119 RKPQLSEKTLELLQ---VVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAN-D-YITSKVIDASENQDLAEQFQVVG-VPK  192 (229)
T ss_dssp             TCCSCCHHHHHHHT---TCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHC-T-TEEEEEEEGGGCHHHHHHTTCCS-SSE
T ss_pred             CccCCCHHHHHHHH---hcCCCeEEEEEECCCCcchHHHHHHHHHHHHHC-C-CeEEEEEECCCCHHHHHHcCCcc-cCE
Confidence            46778889998876   234455 88999999999999999999999998 3 59999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +++  +|+...+.| .++.+.|.+|+.+.+
T Consensus       193 ~~~--~G~~~~~~G-~~~~~~l~~~l~~~~  219 (229)
T 2ywm_A          193 IVI--NKGVAEFVG-AQPENAFLGYIMAVY  219 (229)
T ss_dssp             EEE--GGGTEEEES-CCCHHHHHHHHHHHH
T ss_pred             EEE--CCEEEEeeC-CCCHHHHHHHHHHHh
Confidence            998  888544654 568899999998765

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.37  E-value=1.5e-13  Score=116.10  Aligned_cols=76  Identities=17%  Similarity=0.322  Sum_probs=63.3

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec------CcHHHHHHhCCcCCCCcceeccCCeEEEEeC
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH------NEQGLARRLGVGSQLPQIALLTDGRTSFFKE  220 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~------~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~  220 (554)
                      +++.+|+|||+||++|+++.|.|+++++.+.       .|||+      .++++|++|+|.+ +||+++  +|+.  +. 
T Consensus        12 ~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~-------~v~~~~~~~~~~~~~l~~~~~V~~-~PT~~i--~G~~--~~-   78 (106)
T 3kp8_A           12 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVP-------YVECSPNGPGTPQAQECTEAGITS-YPTWII--NGRT--YT-   78 (106)
T ss_dssp             HHHTCEEEECTTCHHHHHHHHHHGGGGGGSC-------EEESCTTCTTSCCCHHHHHTTCCS-SSEEEE--TTEE--EE-
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHhCC-------EEEEecccccchhHHHHHHcCCeE-eCEEEE--CCEE--ec-
Confidence            3466899999999999999999999997764       67777      6889999999998 999877  8874  55 


Q ss_pred             CcccHHHHHHHHHHh
Q psy16770        221 PSFSVQKMVEFFRLK  235 (554)
Q Consensus       221 g~~~~~~i~~fl~~~  235 (554)
                      |.++.+.|.+|+.-.
T Consensus        79 G~~~~~~l~~~~~~~   93 (106)
T 3kp8_A           79 GVRSLEALAVASGYP   93 (106)
T ss_dssp             SCCCHHHHHHHHTCC
T ss_pred             CCCCHHHHHHHhCCc
Confidence            556889999988543

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.37  E-value=1.4e-12  Score=127.19  Aligned_cols=88  Identities=16%  Similarity=0.156  Sum_probs=76.7

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhC---CCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcc
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELS---PLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSF  223 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~---~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~  223 (554)
                      ++++++.||||||++|+.+.|.|++++..+.   ..++.++.||++.+++++++|+|.+ +||+++  +|+.. +.|. +
T Consensus       138 ~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~-vPt~~i--~G~~~-~~G~-~  212 (243)
T 2hls_A          138 GRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMS-VPSIAI--NGYLV-FVGV-P  212 (243)
T ss_dssp             SCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCS-SSEEEE--TTEEE-EESC-C
T ss_pred             CCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCee-eCeEEE--CCEEE-EeCC-C
Confidence            5577999999999999999999999999982   1369999999999999999999997 999988  88764 6655 5


Q ss_pred             cHHHHHHHHHHhCCCC
Q psy16770        224 SVQKMVEFFRLKLPYK  239 (554)
Q Consensus       224 ~~~~i~~fl~~~~~~~  239 (554)
                      +.++|++++.+.++..
T Consensus       213 ~~~~l~~~l~~~~~~~  228 (243)
T 2hls_A          213 YEEDFLDYVKSAAEGR  228 (243)
T ss_dssp             CHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHhhcc
Confidence            8899999999987654

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.35  E-value=2.2e-12  Score=101.52  Aligned_cols=73  Identities=22%  Similarity=0.378  Sum_probs=63.9

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcc-cHHHHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSF-SVQKMV  229 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~-~~~~i~  229 (554)
                      .|.||++||++|+.+.|.++++++.+.+ ++.++.||   +.+++++|||.+ +||+++  +|+.+..  |.. +.++|.
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~---~~~~~~~~~v~~-~Pt~~~--~G~~~~~--G~~~~~~~l~   73 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELGI-DAEFEKIK---EMDQILEAGLTA-LPGLAV--DGELKIM--GRVASKEEIK   73 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTTC-CEEEEEEC---SHHHHHHHTCSS-SSCEEE--TTEEEEC--SSCCCHHHHH
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCC-ceEEEEec---CHHHHHHCCCCc-CCEEEE--CCEEEEc--CCCCCHHHHH
Confidence            5889999999999999999999999875 58999998   889999999997 999998  8887665  544 778888


Q ss_pred             HHH
Q psy16770        230 EFF  232 (554)
Q Consensus       230 ~fl  232 (554)
                      +++
T Consensus        74 ~~l   76 (77)
T 1ilo_A           74 KIL   76 (77)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            775

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.03  E-value=7.7e-14  Score=121.90  Aligned_cols=92  Identities=21%  Similarity=0.171  Sum_probs=78.4

Q ss_pred             CCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEec--CcHHHHHHhCCcCCCCcceec--cCCeE--
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVH--NEQGLARRLGVGSQLPQIALL--TDGRT--  215 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~--~~~~l~~~~~v~~~~Pti~~~--~~g~~--  215 (554)
                      ..+++++|.||++||++|+.+.|.+   +++++.+++ ++.++.||++  .+..++++|+|.+ +||+++|  ++|+.  
T Consensus        17 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~v~~-~Pt~~~~d~~~G~~~~   94 (130)
T 2lst_A           17 AHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTPEGQELARRYRVPG-TPTFVFLVPKAGAWEE   94 (130)
Confidence            4578999999999999999999999   888888775 4899999994  5689999999997 9999999  67887  


Q ss_pred             EEEeCCcccHHHHHHHHHHhCCC
Q psy16770        216 SFFKEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       216 ~~y~~g~~~~~~i~~fl~~~~~~  238 (554)
                      +....|..+.+.|.+++.+.+..
T Consensus        95 ~~~~~G~~~~~~l~~~l~~~~~~  117 (130)
T 2lst_A           95 VGRLFGSRPRAEFLKELRQVCVK  117 (130)
Confidence            66555666888999999877643

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.34  E-value=4.5e-13  Score=112.63  Aligned_cols=94  Identities=17%  Similarity=0.209  Sum_probs=77.6

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH----HHHHhCCcCCCCcce
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG----LARRLGVGSQLPQIA  208 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~----l~~~~~v~~~~Pti~  208 (554)
                      |.++|++.+.   .+++++|.|+|+|||.|+.+.|.++++++.  + ++.+.+||.++++.    +++++||++..||++
T Consensus        13 s~e~f~~ii~---~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~-~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~i   86 (112)
T 3iv4_A           13 SIDQFEQVIE---ENKYVFVLKHSETCPISANAYDQFNKFLYE--R-DMDGYYLIVQQERDLSDYIAKKTNVKHESPQAF   86 (112)
T ss_dssp             SHHHHHHHHH---HCSEEEEEEECTTCHHHHHHHHHHHHHHHH--H-TCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEE
T ss_pred             CHHHHHHHHh---cCCCEEEEEECCcCHhHHHHHHHHHHHhcc--C-CceEEEEEeecCchhhHHHHHHhCCccCCCeEE
Confidence            4677888773   488999999999999999999999999985  2 58999999999976    799999993289999


Q ss_pred             eccCCeEEEE-eCCcccHHHHHHHH
Q psy16770        209 LLTDGRTSFF-KEPSFSVQKMVEFF  232 (554)
Q Consensus       209 ~~~~g~~~~y-~~g~~~~~~i~~fl  232 (554)
                      +|++|+.+.. .-+..+.+.|.+.+
T Consensus        87 l~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           87 YFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             EEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             EEECCEEEEEeeccccCHHHHHHhh
Confidence            9999998654 33445777776654

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.33  E-value=3.4e-13  Score=118.78  Aligned_cols=105  Identities=13%  Similarity=0.103  Sum_probs=89.1

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCC--CCc
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQ--LPQ  206 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~--~Pt  206 (554)
                      +.++|.++|++.+   +++.+++|.|||+ |++|+.+.|.++++|+++++ .+.|++||.++++.++++|||+ +  +||
T Consensus         8 v~~~t~~~f~~~~---~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~g-k~~f~~vd~d~~~~~a~~~gi~-~~~iPt   81 (133)
T 2djk_A            8 IGEIGPETYSDYM---SAGIPLAYIFAET-AEERKELSDKLKPIAEAQRG-VINFGTIDAKAFGAHAGNLNLK-TDKFPA   81 (133)
T ss_dssp             SEECCHHHHHHHH---HTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTT-TSEEEEECTTTTGGGTTTTTCC-SSSSSE
T ss_pred             eeccChHHHHHHh---cCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCC-eEEEEEEchHHhHHHHHHcCCC-cccCCE
Confidence            6788999998775   4678999999999 89999999999999999987 4999999999999999999999 5  999


Q ss_pred             ceeccC--CeEEEEe-CCcccHHHHHHHHHHhCCCC
Q psy16770        207 IALLTD--GRTSFFK-EPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       207 i~~~~~--g~~~~y~-~g~~~~~~i~~fl~~~~~~~  239 (554)
                      +++|++  |+..... .|..+.+.|.+|+.+.+...
T Consensus        82 l~i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l~Gk  117 (133)
T 2djk_A           82 FAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGK  117 (133)
T ss_dssp             EEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTC
T ss_pred             EEEEecCcCcccCCCCccccCHHHHHHHHHHHHcCC
Confidence            999986  7664332 15668899999998776433

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.30  E-value=5.5e-13  Score=122.59  Aligned_cols=105  Identities=16%  Similarity=0.272  Sum_probs=81.3

Q ss_pred             ccccccccccccc-CCCCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEecCcHHH-----------
Q psy16770        130 LSTTHWNFEKNYI-PKSYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVHNEQGL-----------  194 (554)
Q Consensus       130 ~~Lt~~~F~~~v~-~~~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~~~~~l-----------  194 (554)
                      ..++..+|++.+. .+..+++++|.|||+||++|+.+++.+   .++.+.+++ ++.++.||++.+..+           
T Consensus        29 ~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~  107 (172)
T 3f9u_A           29 VHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNKTPLTEPVKIMENGT  107 (172)
T ss_dssp             CCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCCCEEEEEEEEEETTE
T ss_pred             cccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCcccccchhhhhhhcch
Confidence            4556777777652 123578999999999999999985544   555555543 589999999887655           


Q ss_pred             ---------------HHHhCCcCCCCcceec-cCCeEEEEeCCccc-HHHHHHHHHHhC
Q psy16770        195 ---------------ARRLGVGSQLPQIALL-TDGRTSFFKEPSFS-VQKMVEFFRLKL  236 (554)
Q Consensus       195 ---------------~~~~~v~~~~Pti~~~-~~g~~~~y~~g~~~-~~~i~~fl~~~~  236 (554)
                                     +++|+|.+ +||++++ ++|+.+....|..+ .+.+.+++.+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~-~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l  165 (172)
T 3f9u_A          108 ERTLRTVGDKWSYLQRVKFGANA-QPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGL  165 (172)
T ss_dssp             EEEEEEHHHHHHHHHHHHHSCCC-SSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhHHHHHHcCCCC-cceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHH
Confidence                           89999998 9999999 88988766556666 899999998764

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.30  E-value=3.1e-12  Score=115.52  Aligned_cols=89  Identities=17%  Similarity=0.300  Sum_probs=76.2

Q ss_pred             CCCcEEEEEE-cccccccccchHHH---HHHHHHhCCCCEEEEEEEecCc-----------HHHHHHhCCcCCCCcceec
Q psy16770        146 YTTPHLILFY-SDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVHNE-----------QGLARRLGVGSQLPQIALL  210 (554)
Q Consensus       146 ~~~~~lV~Fy-a~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~~~-----------~~l~~~~~v~~~~Pti~~~  210 (554)
                      .+++++|.|| ++||++|+.+.|.+   .++.+.+.. ++.++.||++..           ..++++|+|.+ +||++++
T Consensus        46 ~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~-~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~-~Pt~~~~  123 (154)
T 2ju5_A           46 DHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV-HLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTG-FPELVFI  123 (154)
T ss_dssp             HCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCS-SSEEEEE
T ss_pred             CCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC-cEEEEEecCccccCCChhhHhhHHHHHHHcCCCC-CCEEEEE
Confidence            4679999999 99999999999999   777666533 589999999875           48999999998 9999999


Q ss_pred             -cCCeEEEEeCCcc--cHHHHHHHHHHhCC
Q psy16770        211 -TDGRTSFFKEPSF--SVQKMVEFFRLKLP  237 (554)
Q Consensus       211 -~~g~~~~y~~g~~--~~~~i~~fl~~~~~  237 (554)
                       ++|+.+... |..  +.+.+.+++.+.+.
T Consensus       124 d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          124 DAEGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             CTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence             899988877 776  78999999987654

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.29  E-value=7.9e-12  Score=109.29  Aligned_cols=87  Identities=17%  Similarity=0.361  Sum_probs=77.0

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------cHHHHHHhCCcCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------EQGLARRLGVGSQ  203 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------~~~l~~~~~v~~~  203 (554)
                      .+++++|.||++||++|+...|.++++++.+.  ++.+..|+++.                      +..++++|+|.+ 
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~-   99 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPW-   99 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCS-
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCC-
Confidence            45799999999999999999999999999997  69999999987                      678999999997 


Q ss_pred             CCcceec-cCCeEEEEeC---CcccHHHHHHHHHHhC
Q psy16770        204 LPQIALL-TDGRTSFFKE---PSFSVQKMVEFFRLKL  236 (554)
Q Consensus       204 ~Pti~~~-~~g~~~~y~~---g~~~~~~i~~fl~~~~  236 (554)
                      +|+++++ ++|+.. ...   |..+.+.|.+++++.+
T Consensus       100 ~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A          100 QPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             SSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             CCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence            9999999 789888 666   6678899999998764

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.29  E-value=2.2e-13  Score=116.03  Aligned_cols=90  Identities=12%  Similarity=0.078  Sum_probs=69.7

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhC-CCCEEEEEEEecCc--HHHHHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELS-PLGVGFFTVHVHNE--QGLARRLGVGSQLPQIALLTDGRTSFFKEPS  222 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~-~~~v~~~~Vd~~~~--~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~  222 (554)
                      +...+||+|||+||++|+.+.|......+... ...+.+.+||.+.+  ..++.+++|.+ .||+++|++|+.+....|.
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g-~PT~i~f~~G~ev~Ri~G~   95 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTF-TPTFVLMAGDVESGRLEGY   95 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCS-SSEEEEEETTEEEEEEECC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCC-CCEEEEEECCEEEeeecCC
Confidence            45689999999999999999764432221110 01257788888876  58999999998 9999999999998888888


Q ss_pred             ccHHHHHHHHHHhC
Q psy16770        223 FSVQKMVEFFRLKL  236 (554)
Q Consensus       223 ~~~~~i~~fl~~~~  236 (554)
                      ...+.+..|+.+.+
T Consensus        96 ~~~~~f~~~L~~~l  109 (116)
T 3dml_A           96 PGEDFFWPMLARLI  109 (116)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            89999999998654

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.26  E-value=1.1e-11  Score=109.53  Aligned_cols=86  Identities=21%  Similarity=0.406  Sum_probs=76.1

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------------------------cHHHHHHhCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------------------------EQGLARRLGV  200 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------------------------~~~l~~~~~v  200 (554)
                      .+++++|.||++||++|+.+.|.++++++.+...++.+..|+++.                         +..++++|+|
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  112 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI  112 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence            567999999999999999999999999999985579999999964                         6689999999


Q ss_pred             cCCCCcceec-cCCeEEEEeCCcccHHHHHHHH
Q psy16770        201 GSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       201 ~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl  232 (554)
                      .+ +|+++++ ++|+.+....|..+.+.|.+++
T Consensus       113 ~~-~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          113 IT-IPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CE-ESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             Cc-cCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            97 9999999 8898876666667889998876

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.25  E-value=1.7e-11  Score=109.58  Aligned_cols=93  Identities=17%  Similarity=0.376  Sum_probs=80.6

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------cHHHHHHhCCcCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------EQGLARRLGVGSQ  203 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------~~~l~~~~~v~~~  203 (554)
                      .+++++|.||++||++|+.+.|.+.++++.+.+.++.+..|+++.                      +..++++|+|.+ 
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-  103 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP-  103 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCS-
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCC-
Confidence            457999999999999999999999999999986679999999976                      358999999997 


Q ss_pred             CCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        204 LPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       204 ~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      +|+++++ ++|+.+....|..+.+.|.+++.+.+...
T Consensus       104 ~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~  140 (151)
T 2f9s_A          104 LPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGE  140 (151)
T ss_dssp             SCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC-
T ss_pred             CCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhh
Confidence            9999888 88988776656668899999999887654

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.25  E-value=1.9e-11  Score=106.64  Aligned_cols=88  Identities=17%  Similarity=0.365  Sum_probs=76.0

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------------------cHHHHHHhCCcC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------------------EQGLARRLGVGS  202 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------------------~~~l~~~~~v~~  202 (554)
                      .+++++|.||++||++|+.+.|.++++++.+.  ++.++.|+++.                       +..++++|+|.+
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  101 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQ  101 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCS
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCC
Confidence            45799999999999999999999999999987  68999999843                       678999999997


Q ss_pred             CCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        203 QLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       203 ~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                       +|+++++ ++|+.. ...|..+.+.|.+++.+.+.
T Consensus       102 -~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A          102 -QPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             -SSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             -CceEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence             9999999 688887 55555688999999988764

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.25  E-value=2.9e-11  Score=108.11  Aligned_cols=93  Identities=19%  Similarity=0.295  Sum_probs=81.6

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH-----------------------HHHHHhCCcC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ-----------------------GLARRLGVGS  202 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~-----------------------~l~~~~~v~~  202 (554)
                      .+++++|.||++||++|+...|.++++++.+.+.++.++.|+++.+.                       .++++|+|.+
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  108 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING  108 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence            46799999999999999999999999999998767999999998865                       7999999997


Q ss_pred             CCCcceecc-CCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        203 QLPQIALLT-DGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       203 ~~Pti~~~~-~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                       +|+++++. +|+.+....|..+.+.|.+++.+.....
T Consensus       109 -~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~  145 (152)
T 2lja_A          109 -IPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLE  145 (152)
T ss_dssp             -SCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCC
T ss_pred             -CCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhccc
Confidence             99999995 8988877767678899999998876543

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.24  E-value=2e-11  Score=108.26  Aligned_cols=90  Identities=18%  Similarity=0.333  Sum_probs=78.1

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe---------------------------cCcHHHHHHh
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV---------------------------HNEQGLARRL  198 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~---------------------------~~~~~l~~~~  198 (554)
                      .+++++|.||++||++|+.+.|.++++++.+.+. +.+..|++                           +.+..++++|
T Consensus        28 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  106 (148)
T 2b5x_A           28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF  106 (148)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred             CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHh
Confidence            4679999999999999999999999999999875 89999995                           4567899999


Q ss_pred             CCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        199 GVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       199 ~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      +|.+ +|+++++ ++|+.+....|..+.+.+.+++.+.+.
T Consensus       107 ~v~~-~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A          107 ENEY-VPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             CCCC-SSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHT
T ss_pred             CCCC-CCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHh
Confidence            9997 9999999 889887766565688999999987754

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.23  E-value=3.4e-11  Score=106.84  Aligned_cols=89  Identities=9%  Similarity=0.177  Sum_probs=77.6

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH-------------------------HHHHhCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG-------------------------LARRLGV  200 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~-------------------------l~~~~~v  200 (554)
                      .+++++|.||++||++|+...|.+.++++.+.+.++.+..|+++.+.+                         +++.|+|
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i  109 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI  109 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence            457999999999999999999999999999987679999999998776                         9999999


Q ss_pred             cCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        201 GSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       201 ~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      .+ +|+++++ ++|+......|..+.+.+++.+.+.
T Consensus       110 ~~-~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~  144 (148)
T 3hcz_A          110 YA-TPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKS  144 (148)
T ss_dssp             CS-SCEEEEECTTCBEEEESCCGGGHHHHHHHHHHH
T ss_pred             CC-CCEEEEECCCCcEEEecCCHHHHHHHHHHHHHH
Confidence            97 9999999 8899877776766777777766554

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.23  E-value=3.5e-11  Score=109.00  Aligned_cols=92  Identities=15%  Similarity=0.306  Sum_probs=81.1

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHh---------------------------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL---------------------------  198 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~---------------------------  198 (554)
                      .+++++|.||++||++|+...|.++++++.+.+.++.++.|+++.+...++++                           
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG  112 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence            45799999999999999999999999999998777999999999988777777                           


Q ss_pred             CCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCCC
Q psy16770        199 GVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       199 ~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~~  238 (554)
                      ++.+ +|+++++ ++|+++....|..+.+.+.+++++.+..
T Consensus       113 ~i~~-~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  152 (165)
T 3or5_A          113 GITG-IPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGA  152 (165)
T ss_dssp             CSCS-SSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC-
T ss_pred             CCCC-CCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            9997 9998888 8999887776767889999999988653

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.23  E-value=2.5e-11  Score=108.73  Aligned_cols=92  Identities=13%  Similarity=0.264  Sum_probs=79.6

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC------------------------cHHHHHHhC--
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN------------------------EQGLARRLG--  199 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~------------------------~~~l~~~~~--  199 (554)
                      .+++++|.||++||++|+...|.+.++++++++.++.++.|+++.                        ...++++||  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            457999999999999999999999999999977689999999873                        456788899  


Q ss_pred             CcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCCC
Q psy16770        200 VGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       200 v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~~  238 (554)
                      +.+ +|+++++ ++|+.+....|..+.+.|.+++++....
T Consensus       103 v~~-~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~  141 (151)
T 3raz_A          103 VGV-LPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSK  141 (151)
T ss_dssp             SCC-SSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC
T ss_pred             cCC-CCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            997 9999888 8899877777777889999999877544

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.21  E-value=2.5e-10  Score=118.04  Aligned_cols=204  Identities=12%  Similarity=0.108  Sum_probs=143.8

Q ss_pred             cccccc-cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        128 HKLSTT-HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       128 ~~~~Lt-~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      .+..++ .+++++.+.  ..+++++|.||++||.   ...+.|.++|..+.+ .+.|+.++   +..+|++++|+  .|+
T Consensus       126 ~v~~i~~~~~~~~~~~--~~~~~~vv~ff~~~~~---~~~~~f~~~A~~~~~-~~~F~~~~---~~~~~~~~~v~--~p~  194 (367)
T 3us3_A          126 PVELIEGERELQAFEN--IEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHP-YIPFFATF---DSKVAKKLTLK--LNE  194 (367)
T ss_dssp             SEEECCSHHHHHHHHH--CCSSCEEEEECSCTTC---HHHHHHHHHHHHHTT-TSCEEEEC---CHHHHHHHTCC--TTC
T ss_pred             CcEEcCCHHHHHHHhc--cCCCcEEEEEECCCCc---hHHHHHHHHHHhhcC-CcEEEEEC---CHHHHHHcCCC--CCe
Confidence            344554 577877763  1457899999999865   567899999999986 48888775   56899999997  499


Q ss_pred             ceeccC--CeEEEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchh---HH-HHH-
Q psy16770        207 IALLTD--GRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVR---LR-YLI-  279 (554)
Q Consensus       207 i~~~~~--g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~---~~-~~~-  279 (554)
                      |++|+.  +..+.|.|+.++.++|.+|+.....|. +..+|.+++.+.+.+  ...++.+++|.+...+.   .. .+. 
T Consensus       195 i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~-v~elt~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~l~~  271 (367)
T 3us3_A          195 IDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRST-LRKLKPESMYETWED--DMDGIHIVAFAEEADPDGYEFLEILKS  271 (367)
T ss_dssp             EEEECTTCSSCEECSSSSCCHHHHHHHHHHTCSCS-EEECCGGGHHHHHHS--CBTTEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCeecCCCCCCHHHHHHHHHHcCccc-eeecChhhHHHHHhh--ccCCcEEEEEEcCCChhHHHHHHHHHH
Confidence            999976  456778776678999999999998877 788899988776643  12445666675544321   21 122 


Q ss_pred             HhhccCC--ceEEEEEEccCCCChhH----HhHhCCCCCCceEEEEeCCCCCCCceeec---CCCChhHHHhHHhcC
Q psy16770        280 NAFKHRT--TIVFGVIVYDQEDSSSV----FQRFKVPGDKDSLLIFKEDKDRPSASITM---NSIPVPTLQDITDNN  347 (554)
Q Consensus       280 ~a~~~~~--~v~Fg~v~~~~~~~~~l----~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~---~~~~~~~l~~fi~~~  347 (554)
                      .|-++++  ++.|++++++.  ....    .+.||++...|++++++........+...   +.++.+.|.+|++..
T Consensus       272 vA~~~~~~~ki~F~~id~~~--~~~~l~~~~~~fgl~~~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~  346 (367)
T 3us3_A          272 VAQDNTDNPDLSIIWIDPDD--FPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDV  346 (367)
T ss_dssp             HHHHTTTCTTCCEEEECGGG--CTTTHHHHHHHHTCCTTSCEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHH
T ss_pred             HHHHcCCCCceEEEEECCcc--chhHHHHHHHhcCCCCCCCeEEEEecccccceeecCCcccccCCHHHHHHHHHHH
Confidence            2236676  69999998873  3322    45699985699999998643311112122   468999999999743

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.20  E-value=5.8e-11  Score=105.32  Aligned_cols=88  Identities=16%  Similarity=0.246  Sum_probs=75.9

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHh-CCCCEEEEEEEecC-------------------------cHHHHHHhC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDEL-SPLGVGFFTVHVHN-------------------------EQGLARRLG  199 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l-~~~~v~~~~Vd~~~-------------------------~~~l~~~~~  199 (554)
                      .+++++|.||++||++|+...|.+.++++.+ .+.++.+..|+++.                         +..++++|+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            4579999999999999999999999999999 77679999999887                         448999999


Q ss_pred             CcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        200 VGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       200 v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      |.+ +|+++++ ++|+.+....   +.+.+.+++.+.+.
T Consensus       112 v~~-~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          112 ILT-LPTNILLSPTGKILARDI---QGEALTGKLKELLK  146 (148)
T ss_dssp             CCS-SSEEEEECTTSBEEEESC---CHHHHHHHHHHHC-
T ss_pred             CCC-cCEEEEECCCCeEEEecC---CHHHHHHHHHHHHc
Confidence            997 9999999 7888776654   66888888887653

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.20  E-value=1.2e-11  Score=112.06  Aligned_cols=92  Identities=23%  Similarity=0.356  Sum_probs=76.2

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEE----------------------------EecCcHHHHHH
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV----------------------------HVHNEQGLARR  197 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~V----------------------------d~~~~~~l~~~  197 (554)
                      .+++++|.||++||++|+.+.|.+++++++++..++.+..|                            +++.+..++++
T Consensus        37 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  116 (164)
T 2h30_A           37 KDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQN  116 (164)
T ss_dssp             TTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHHH
Confidence            56799999999999999999999999999875445555444                            44556789999


Q ss_pred             hCCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCCC
Q psy16770        198 LGVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       198 ~~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~~  238 (554)
                      |+|.+ +||++++ ++|+.+....|..+.+.|.+++.+.+..
T Consensus       117 ~~v~~-~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~~  157 (164)
T 2h30_A          117 LNISV-YPSWALIGKDGDVQRIVKGSINEAQALALIRNPNAD  157 (164)
T ss_dssp             TTCCS-SSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTCC
T ss_pred             cCCCc-cceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            99997 9999998 8899877666667889999999887653

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.19  E-value=4.3e-10  Score=115.49  Aligned_cols=202  Identities=14%  Similarity=0.167  Sum_probs=141.2

Q ss_pred             cccc-ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLST-THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~L-t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +..| +.+++++.+.  ..+++++|.||++||.   ...+.|.++|+.+++ .+.|+.++   ++.+|++++++  +|++
T Consensus       125 ~~~l~~~~~~~~~~~--~~~~~~vv~ff~~~~~---~~~~~~~~~A~~~~~-~~~f~~~~---~~~~~~~~~v~--~p~i  193 (350)
T 1sji_A          125 VEIINSKLEVQAFER--IEDQIKLIGFFKSEES---EYYKAFEEAAEHFQP-YIKFFATF---DKGVAKKLSLK--MNEV  193 (350)
T ss_dssp             EEECCSHHHHHHHHH--CCSSCEEEEECSCTTS---HHHHHHHHHHHHTTT-TSEEEEEC---CHHHHHHHTCC--TTCE
T ss_pred             ceeccchHHHHHHhc--cCCCcEEEEEECCCCc---HHHHHHHHHHHhhcc-CcEEEEEC---CHHHHHHcCCC--CCcE
Confidence            4456 3567777662  0345789999999864   457899999999976 48898874   57899999996  8999


Q ss_pred             eeccC--CeEEEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchh---HHH-HH-H
Q psy16770        208 ALLTD--GRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVR---LRY-LI-N  280 (554)
Q Consensus       208 ~~~~~--g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~---~~~-~~-~  280 (554)
                      ++|++  +....|.|+.++.++|.+|+....-|. +..+|.+++.++..+  ...+..+++|.....+.   ... +. .
T Consensus       194 ~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~-v~elt~~~~~~~~~~--~~~~~~~l~f~~~~~~~~~~~~~~~~~v  270 (350)
T 1sji_A          194 DFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPT-LRRLRPEDMFETWED--DLNGIHIVAFAERSDPDGYEFLEILKQV  270 (350)
T ss_dssp             EEECTTCSSCEECSSSSCCHHHHHHHHHHHCCCS-EEECCTTTHHHHHHS--CSSSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEeCCCCCceecCCCCCCHHHHHHHHHHcCccc-hhhcChhhHHHHhcC--CCCCcEEEEEEcCCCccHHHHHHHHHHH
Confidence            99975  355677766468999999999988877 788899998887642  11244555565543322   221 11 2


Q ss_pred             hhccCC--ceEEEEEEccCCCChhHH----hHhCCCCCCceEEEEeCCCCCCCce-ee--cCCCChhHHHhHHhc
Q psy16770        281 AFKHRT--TIVFGVIVYDQEDSSSVF----QRFKVPGDKDSLLIFKEDKDRPSAS-IT--MNSIPVPTLQDITDN  346 (554)
Q Consensus       281 a~~~~~--~v~Fg~v~~~~~~~~~l~----~k~~i~~~~Ptlvvfk~~~~~~~~~-i~--~~~~~~~~l~~fi~~  346 (554)
                      |.++++  .+.|+.++++  ....++    +.||++.+.|++++++......... ..  .+.++.+.|.+|++.
T Consensus       271 A~~~~~~~~~~f~~id~~--~~~~~~~~~~~~~gi~~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d  343 (350)
T 1sji_A          271 ARDNTDNPDLSIVWIDPD--DFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIED  343 (350)
T ss_dssp             HHHGGGCSSCCEEEECGG--GCHHHHHHHHHHCCSCTTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHH
T ss_pred             HHHhCCCCceEEEEECch--hhHHHHHHHHhhcCCCccCCcEEEEecccccccccCCCcccccCCHHHHHHHHHH
Confidence            225554  8999999887  455666    7899985589999998632211111 11  247788899999975

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.16  E-value=2.1e-12  Score=118.05  Aligned_cols=90  Identities=19%  Similarity=0.355  Sum_probs=73.4

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH-HHHHhCC--cCCCCcceec-cCCeEEEEeC
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG-LARRLGV--GSQLPQIALL-TDGRTSFFKE  220 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~-l~~~~~v--~~~~Pti~~~-~~g~~~~y~~  220 (554)
                      ..+++++|.|||+||++|+.+.|.++++++.... ++.|+.||++.+.. ++.++++  .+ +||+++| ++|+.+....
T Consensus        44 ~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~d~~~~~~~~~~~~~~~~-~Pt~~~~d~~G~~~~~~~  121 (164)
T 1sen_A           44 ASGLPLMVIIHKSWCGACKALKPKFAESTEISEL-SHNFVMVNLEDEEEPKDEDFSPDGGY-IPRILFLDPSGKVHPEII  121 (164)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEGGGSCSCGGGCTTCSC-SSEEEEECTTSCBCTTCC
T ss_pred             hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEecCCchHHHHHhcccCCc-CCeEEEECCCCCEEEEEe
Confidence            3578999999999999999999999997766543 36788899998877 8889988  76 9999999 8898765444


Q ss_pred             C----------cccHHHHHHHHHHhC
Q psy16770        221 P----------SFSVQKMVEFFRLKL  236 (554)
Q Consensus       221 g----------~~~~~~i~~fl~~~~  236 (554)
                      |          ..+.+.|++++.+.+
T Consensus       122 G~~~~~~~~~~~~~~~~l~~~l~~~l  147 (164)
T 1sen_A          122 NENGNPSYKYFYVSAEQVVQGMKEAQ  147 (164)
T ss_dssp             CTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             CCCCccchhcccCCHHHHHHHHHHHH
Confidence            4          257888988888764

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.16  E-value=1e-10  Score=105.26  Aligned_cols=92  Identities=13%  Similarity=0.104  Sum_probs=77.6

Q ss_pred             CCCcEEEEEEcccccccccc-hHHHHHHHHHhCCCCEEEEEEEec----------------------------CcH----
Q psy16770        146 YTTPHLILFYSDWCFACLQV-EPIFKKLMDELSPLGVGFFTVHVH----------------------------NEQ----  192 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l-~p~~~~~a~~l~~~~v~~~~Vd~~----------------------------~~~----  192 (554)
                      .+++++|.||++||++|+.. .|.++++++++++.++.+..|+++                            .+.    
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            35799999999999999996 999999999998668999999863                            222    


Q ss_pred             -HHHHHhCCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCCC
Q psy16770        193 -GLARRLGVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       193 -~l~~~~~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~~  238 (554)
                       .+++.|+|.+ +|+++++ ++|+++....|..+.+.|.+.+.+.+..
T Consensus       107 ~~~~~~~~v~~-~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A          107 PRTMAAYQMRG-TPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             CHHHHHTTCCS-SSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCCC-CCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence             5899999997 9999888 7898876665667889999999887643

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.15  E-value=9.1e-11  Score=105.77  Aligned_cols=92  Identities=13%  Similarity=0.148  Sum_probs=78.0

Q ss_pred             CCCcEEEEEEccccccccc-chHHHHHHHHHhCCCCEEEEEEEe----------------------------cCcHH---
Q psy16770        146 YTTPHLILFYSDWCFACLQ-VEPIFKKLMDELSPLGVGFFTVHV----------------------------HNEQG---  193 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~-l~p~~~~~a~~l~~~~v~~~~Vd~----------------------------~~~~~---  193 (554)
                      .+++++|.||++||++|+. +.|.++++++++++.++.+..|++                            +....   
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            3579999999999999999 599999999999877899999986                            23334   


Q ss_pred             ---HHHHhCCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCCC
Q psy16770        194 ---LARRLGVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       194 ---l~~~~~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~~  238 (554)
                         ++++|||.+ +|+++++ ++|+++....|..+.+.+.+.+.+.+..
T Consensus       109 ~~~~~~~~~v~~-~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A          109 IPSTMKKYRLEG-TPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             SCHHHHHTTCCS-SSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             hhhHHHhcccCc-cceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence               999999997 9999998 6898877666667889999999887653

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.15  E-value=1e-10  Score=104.45  Aligned_cols=93  Identities=16%  Similarity=0.285  Sum_probs=77.9

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH----------------------HHHHHhCCcCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ----------------------GLARRLGVGSQ  203 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~----------------------~l~~~~~v~~~  203 (554)
                      .+++++|.||++||++|+...|.+.++++.+.+.++.+..|+++.+.                      .+++.|+|.+ 
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-  105 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKG-  105 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCS-
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCC-
Confidence            45799999999999999999999999999998767999999998765                      7889999997 


Q ss_pred             CCcceec-cCCeEEEEeCCc--ccHHHHHHHHHHhCCCC
Q psy16770        204 LPQIALL-TDGRTSFFKEPS--FSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       204 ~Pti~~~-~~g~~~~y~~g~--~~~~~i~~fl~~~~~~~  239 (554)
                      +|+++++ ++|+.+....|.  .+.+.|.+++.+.+...
T Consensus       106 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~  144 (152)
T 3gl3_A          106 MPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGN  144 (152)
T ss_dssp             SSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC--
T ss_pred             CCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccc
Confidence            9998888 889887655443  24589999999887654

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.15  E-value=7.6e-11  Score=105.43  Aligned_cols=92  Identities=14%  Similarity=0.181  Sum_probs=77.9

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEE-----------------------ecCcHHHHHHhCCcC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVH-----------------------VHNEQGLARRLGVGS  202 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd-----------------------~~~~~~l~~~~~v~~  202 (554)
                      .+++++|.||++||++|+...|.++++++.+.+.++.+..|+                       ++.+..+++.|+|.+
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  106 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV  106 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence            357899999999999999999999999999987678888766                       455778999999997


Q ss_pred             CCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCCC
Q psy16770        203 QLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       203 ~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~~  238 (554)
                       +|+++++ ++|+.+..+.|..+.+.|.+++.+.+..
T Consensus       107 -~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~  142 (153)
T 2l5o_A          107 -YPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRN  142 (153)
T ss_dssp             -SSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred             -cCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence             9999998 7898866555666889999999887643

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.14  E-value=2e-11  Score=111.70  Aligned_cols=98  Identities=9%  Similarity=-0.041  Sum_probs=75.8

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhC---CcCCCC
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLG---VGSQLP  205 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~---v~~~~P  205 (554)
                      .+.++.+.+...-  ...+++++|.|||+||++|+.+.|.++++++.+.  ++.+..||.+++++++.+|+   +.+ +|
T Consensus        38 ~~~~~~~~~~~l~--~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~~~~~~~~~~~~~v~~-iP  112 (167)
T 1z6n_A           38 SNGLPSALTERLQ--RIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--NIELAIISKGRAEDDLRQRLALERIA-IP  112 (167)
T ss_dssp             HHCCCHHHHHHHH--TCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHHHHHTTTTTTCSSCC-SS
T ss_pred             ccCCCHHHHHHHH--HhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCCCHHHHHHHHHcCCCC-cC
Confidence            4456655554432  1245789999999999999999999999998875  59999999999999999997   997 99


Q ss_pred             cceeccC-CeEEEEeCCcccHHHHHHHHH
Q psy16770        206 QIALLTD-GRTSFFKEPSFSVQKMVEFFR  233 (554)
Q Consensus       206 ti~~~~~-g~~~~y~~g~~~~~~i~~fl~  233 (554)
                      |++++.+ |+.....|+. . ..+...+.
T Consensus       113 t~i~~~~~G~~~~~~g~~-p-~~~~~~i~  139 (167)
T 1z6n_A          113 LVLVLDEEFNLLGRFVER-P-QAVLDGGP  139 (167)
T ss_dssp             EEEEECTTCCEEEEEESS-C-HHHHHHCH
T ss_pred             eEEEECCCCCEEEEEcCC-C-HHHHHhHH
Confidence            9999976 5776666653 3 44444444

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.14  E-value=1.1e-10  Score=104.57  Aligned_cols=88  Identities=19%  Similarity=0.401  Sum_probs=78.2

Q ss_pred             CcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe---------------------------cCcHHHHHHhCC
Q psy16770        148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV---------------------------HNEQGLARRLGV  200 (554)
Q Consensus       148 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~---------------------------~~~~~l~~~~~v  200 (554)
                      ++++|.||++||++|+...|.+.++++++   ++.+..|++                           +.+..++++|+|
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET---GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKV  107 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH---CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSB
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc---CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCC
Confidence            79999999999999999999999999999   588999998                           467889999999


Q ss_pred             cCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        201 GSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       201 ~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      .+ +|+++++ ++|+.+....|..+.+.|.+++++.....
T Consensus       108 ~~-~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~  146 (154)
T 3ia1_A          108 LG-QPWTFVVDREGKVVALFAGRAGREALLDALLLAGADL  146 (154)
T ss_dssp             CS-SCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC
T ss_pred             Cc-ccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcc
Confidence            97 9998877 89998777767778999999999887654

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.13  E-value=8.7e-11  Score=98.58  Aligned_cols=78  Identities=9%  Similarity=0.225  Sum_probs=68.0

Q ss_pred             CcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHH
Q psy16770        148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQK  227 (554)
Q Consensus       148 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~  227 (554)
                      .+.++.|+++||+.|+.+.|.++++++++   ++.+.+||.+++++++.+||+ . +|++++|.+|+.+. .|+ .+.+.
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~---~i~~~~vDId~d~~l~~~ygv-~-VP~l~~~~dG~~v~-~g~-~~~~~  101 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKS---WFELEVINIDGNEHLTRLYND-R-VPVLFAVNEDKELC-HYF-LDSDV  101 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHS---CCCCEEEETTTCHHHHHHSTT-S-CSEEEETTTTEEEE-CSS-CCCHH
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhc---CCeEEEEECCCCHHHHHHhCC-C-CceEEEEECCEEEE-ecC-CCHHH
Confidence            35689999999999999999999999886   488999999999999999998 4 99999999998763 344 57788


Q ss_pred             HHHHH
Q psy16770        228 MVEFF  232 (554)
Q Consensus       228 i~~fl  232 (554)
                      |.+|+
T Consensus       102 L~~~L  106 (107)
T 2fgx_A          102 IGAYL  106 (107)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88886

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.12  E-value=1.7e-10  Score=100.38  Aligned_cols=88  Identities=18%  Similarity=0.300  Sum_probs=74.8

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe----------------------------cCcHHHHHH
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV----------------------------HNEQGLARR  197 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~----------------------------~~~~~l~~~  197 (554)
                      .+++++|.||++||++|+...|.++++++.+.. ++.+..|++                            +.+..++++
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   99 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGD-DYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLET   99 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT-TEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC-CcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHH
Confidence            457899999999999999999999999998654 689998853                            446689999


Q ss_pred             hCCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        198 LGVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      |+|.+ +|+++++ ++|+......|..+.+++.+++++.
T Consensus       100 ~~v~~-~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A          100 YGVRS-YPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             TTCCS-SSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             cCccc-CCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            99997 9999999 8899876666767889999988764

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.11  E-value=2.9e-10  Score=101.78  Aligned_cols=88  Identities=14%  Similarity=0.204  Sum_probs=74.5

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------------------------cHHHHHHhCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------------------------EQGLARRLGV  200 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------------------------~~~l~~~~~v  200 (554)
                      .+++++|.||++||++|+...|.++++++.+.+.++.+..|+++.                         +..++++|||
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI  107 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence            357999999999999999999999999999987679999999997                         5789999999


Q ss_pred             cCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        201 GSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       201 ~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      .+ +|+++++ ++|+.+....   +.+.+.+++++.+.
T Consensus       108 ~~-~P~~~lid~~G~i~~~~~---~~~~l~~~l~~l~~  141 (152)
T 2lrn_A          108 VG-FPHIILVDPEGKIVAKEL---RGDDLYNTVEKFVN  141 (152)
T ss_dssp             CS-SCEEEEECTTSEEEEECC---CTTHHHHHHHHHHT
T ss_pred             Cc-CCeEEEECCCCeEEEeeC---CHHHHHHHHHHHHh
Confidence            97 9999998 7898876642   33567777766543

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.10  E-value=2.1e-11  Score=111.81  Aligned_cols=81  Identities=16%  Similarity=0.226  Sum_probs=66.7

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHH-H--HHHHHHhCCCCEEEEEEEecCcHHHHHHh--------CCc
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPI-F--KKLMDELSPLGVGFFTVHVHNEQGLARRL--------GVG  201 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~-~--~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~--------~v~  201 (554)
                      +.+.|+...   ..+++++|.|||+||++|+.++|+ |  .++++.+++ ++.+++||.++.+++++.|        ||.
T Consensus        28 ~~ea~~~A~---~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~~~~q~~~gv~  103 (173)
T 3ira_A           28 GEEAFEKAR---KENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYMTVCQIILGRG  103 (173)
T ss_dssp             SHHHHHHHH---HHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CHHHHHHHH---HhCCCEEEecccchhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHHHHHHHHcCCC
Confidence            345566555   468899999999999999999993 4  567777765 4899999999999999999        999


Q ss_pred             CCCCcceecc-CCeEEEE
Q psy16770        202 SQLPQIALLT-DGRTSFF  218 (554)
Q Consensus       202 ~~~Pti~~~~-~g~~~~y  218 (554)
                      + +||++++. +|+++.-
T Consensus       104 g-~Pt~v~l~~dG~~v~~  120 (173)
T 3ira_A          104 G-WPLNIIMTPGKKPFFA  120 (173)
T ss_dssp             C-SSEEEEECTTSCEEEE
T ss_pred             C-CcceeeECCCCCceee
Confidence            8 99999995 8887654

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.08  E-value=8.3e-12  Score=112.11  Aligned_cols=88  Identities=9%  Similarity=0.103  Sum_probs=64.9

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHH---HHhCCCCEEEEEEEec-CcHHHHHHhCCcCCCCcceecc-CCeEEEEe
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLM---DELSPLGVGFFTVHVH-NEQGLARRLGVGSQLPQIALLT-DGRTSFFK  219 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a---~~l~~~~v~~~~Vd~~-~~~~l~~~~~v~~~~Pti~~~~-~g~~~~y~  219 (554)
                      ..+++++|.|||+||++|+.+.|.+.+..   +.++   ..|+.||++ ...+++.+++|.+ +||+++|. +|+.+...
T Consensus        42 ~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~---~~fv~V~vD~e~~~~~~~~~v~~-~PT~~f~~~~G~~v~~~  117 (151)
T 3ph9_A           42 KSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ---NKFIMLNLMHETTDKNLSPDGQY-VPRIMFVDPSLTVRADI  117 (151)
T ss_dssp             HHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH---HTCEEEEESSCCSCGGGCTTCCC-SSEEEEECTTSCBCTTC
T ss_pred             HcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh---cCeEEEEecCCchhhHhhcCCCC-CCEEEEECCCCCEEEEE
Confidence            35789999999999999999999988642   2222   245666664 3456788999998 99999997 89876555


Q ss_pred             CCc----------ccHHHHHHHHHHhC
Q psy16770        220 EPS----------FSVQKMVEFFRLKL  236 (554)
Q Consensus       220 ~g~----------~~~~~i~~fl~~~~  236 (554)
                      .|.          .+.+.+++.+++.+
T Consensus       118 ~G~~~~~~~~~~~~~~~~ll~~~~~al  144 (151)
T 3ph9_A          118 AGRYSNRLYTYEPRDLPLLIENMKKAL  144 (151)
T ss_dssp             CCSCTTSTTCCCGGGHHHHHHHHHHHH
T ss_pred             eCCcCCcccccchhhHHHHHHHHHHHH
Confidence            454          35566777776654

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.08  E-value=1.3e-10  Score=94.00  Aligned_cols=74  Identities=20%  Similarity=0.360  Sum_probs=62.5

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVE  230 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~  230 (554)
                      ++.|+++||+.|+.+.|.+++++.++      +.+||.+++++++++||++  +||+++ .+|+.+.  | ..+.+.|.+
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~------~~~vdid~~~~l~~~~g~~--vPtl~~-~~G~~v~--g-~~~~~~L~~   70 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA------FFSVFIDDDAALESAYGLR--VPVLRD-PMGRELD--W-PFDAPRLRA   70 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC------EEEEECTTCHHHHHHHTTT--CSEEEC-TTCCEEE--S-CCCHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh------eEEEECCCCHHHHHHhCCC--cCeEEE-ECCEEEe--C-CCCHHHHHH
Confidence            68899999999999999998765432      6899999999999999994  999998 8898874  4 457899999


Q ss_pred             HHHHhC
Q psy16770        231 FFRLKL  236 (554)
Q Consensus       231 fl~~~~  236 (554)
                      ++.+.+
T Consensus        71 ~l~~~~   76 (87)
T 1ttz_A           71 WLDAAP   76 (87)
T ss_dssp             HHHTCC
T ss_pred             HHHHHH
Confidence            997654

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.06  E-value=3.9e-10  Score=100.85  Aligned_cols=91  Identities=13%  Similarity=0.315  Sum_probs=74.9

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-----------------------HHHHHHhCCcC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-----------------------QGLARRLGVGS  202 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-----------------------~~l~~~~~v~~  202 (554)
                      .+++++|.||++||++|+...|.++++++.+.+.++.+..|+++.+                       ..++++|+|.+
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            4579999999999999999999999999999877799999999875                       44899999997


Q ss_pred             CCCcceec-cCCeEEEEeCCcc--cHHHHHHHHHHhCC
Q psy16770        203 QLPQIALL-TDGRTSFFKEPSF--SVQKMVEFFRLKLP  237 (554)
Q Consensus       203 ~~Pti~~~-~~g~~~~y~~g~~--~~~~i~~fl~~~~~  237 (554)
                       +|+++++ ++|+.+....|..  +.+.+.+++++...
T Consensus       107 -~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~  143 (154)
T 3kcm_A          107 -VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELS  143 (154)
T ss_dssp             -BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC--
T ss_pred             -CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHH
Confidence             9976666 8898876554443  56789999887654

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.06  E-value=4.6e-10  Score=101.89  Aligned_cols=86  Identities=12%  Similarity=0.360  Sum_probs=74.0

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec------------------Cc----------------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH------------------NE----------------  191 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~------------------~~----------------  191 (554)
                      .+++++|.||++||++|+...|.++++++++.  ++.+..|+++                  ..                
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSW  113 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTS
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCe
Confidence            45799999999999999999999999999997  6999999998                  44                


Q ss_pred             ------HHHHHHhCCcCCCCcceec-cCCeEEEEeCCcc-cHHHHHHHHHHhC
Q psy16770        192 ------QGLARRLGVGSQLPQIALL-TDGRTSFFKEPSF-SVQKMVEFFRLKL  236 (554)
Q Consensus       192 ------~~l~~~~~v~~~~Pti~~~-~~g~~~~y~~g~~-~~~~i~~fl~~~~  236 (554)
                            ..+++.|+|.+ +|+++++ ++|+... . |.. +.+.|.+.+.+.+
T Consensus       114 ~~~~d~~~~~~~~~v~~-~P~~~lid~~G~i~~-~-g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A          114 IMVMDDGSLVEKFNVRS-IDYIVIMDKSSNVLY-A-GTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             EEEECCSHHHHHTTCCS-SSEEEEEETTCCEEE-E-EESCCHHHHHHHHHHC-
T ss_pred             eEEeChHHHHHHhCCCC-ceEEEEEcCCCcEEE-e-CCCCCHHHHHHHHHHHh
Confidence                  38899999997 9999999 7888877 4 445 7899999888765

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.05  E-value=3.2e-10  Score=104.88  Aligned_cols=90  Identities=12%  Similarity=0.280  Sum_probs=75.6

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCE------EEEEEEecC-cHHHHHHh--------------------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGV------GFFTVHVHN-EQGLARRL--------------------  198 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v------~~~~Vd~~~-~~~l~~~~--------------------  198 (554)
                      .++++||.||++||++|+...|.++++++.+++.++      .++.|+++. ++..++++                    
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  137 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA  137 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence            457999999999999999999999999999986668      999999998 67777776                    


Q ss_pred             -----CCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        199 -----GVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       199 -----~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                           ++.+ +|+++++ ++|+++..+.|..+.++|.+++.+.+
T Consensus       138 ~~~~~~v~~-~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  180 (183)
T 3lwa_A          138 SLGGVPASV-IPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLV  180 (183)
T ss_dssp             GTTTCCTTC-CSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             HhccCCCCC-CCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence                 6887 9976665 88998877667678899999988764

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.05  E-value=2e-10  Score=104.61  Aligned_cols=86  Identities=16%  Similarity=0.307  Sum_probs=70.1

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEE-----------------------ecCcHHHHHHhCCcC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVH-----------------------VHNEQGLARRLGVGS  202 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd-----------------------~~~~~~l~~~~~v~~  202 (554)
                      .+++++|.||++||++|+.+.|.++++++.    ++.+..|+                       ++.+..++++|+|.+
T Consensus        50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  125 (168)
T 2b1k_A           50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG  125 (168)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHC----CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccc
Confidence            567999999999999999999999999876    47777777                       455678999999997


Q ss_pred             CCCcc-eeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        203 QLPQI-ALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       203 ~~Pti-~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                       +|++ ++.++|+......|..+.+.+.+++.+.+
T Consensus       126 -~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  159 (168)
T 2b1k_A          126 -APETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  159 (168)
T ss_dssp             -SSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHH
T ss_pred             -cCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence             9955 55588998766656668888888877654

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.04  E-value=5.8e-10  Score=100.54  Aligned_cols=92  Identities=17%  Similarity=0.339  Sum_probs=75.2

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------------------cHHHHHHhCCcCCCCc
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------------------EQGLARRLGVGSQLPQ  206 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------------------~~~l~~~~~v~~~~Pt  206 (554)
                      .+++++|.||++||++|+...|.++++++.+...++.++.|+++.                   +..++++|+|.+ +|+
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-~P~  118 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANR-LPD  118 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCS-SSE
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCC-cce
Confidence            357999999999999999999999999999986679999999987                   689999999997 999


Q ss_pred             ceec-cCCeEEEEeCCc--ccHHHHHHHHHHhCCC
Q psy16770        207 IALL-TDGRTSFFKEPS--FSVQKMVEFFRLKLPY  238 (554)
Q Consensus       207 i~~~-~~g~~~~y~~g~--~~~~~i~~fl~~~~~~  238 (554)
                      ++++ ++|++.....|.  .+..++++.+.+...+
T Consensus       119 ~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~~  153 (158)
T 3hdc_A          119 TFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEGH  153 (158)
T ss_dssp             EEEECTTSBEEEEEESCCCTTSHHHHHHHHTTC--
T ss_pred             EEEEcCCCCEEEEEeCCCccchHHHHHHHHhhccc
Confidence            7777 889876555443  3456777777665543

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.04  E-value=2.8e-10  Score=100.60  Aligned_cols=83  Identities=13%  Similarity=0.233  Sum_probs=70.1

Q ss_pred             CCcEEEEEEcccccccccchHHHHH---HHHHhCCCCEEEEEEEecCcHH------------------------HHHHhC
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKK---LMDELSPLGVGFFTVHVHNEQG------------------------LARRLG  199 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~---~a~~l~~~~v~~~~Vd~~~~~~------------------------l~~~~~  199 (554)
                      +++++|.||++||++|+...|.+++   +.+.+++.++.+..|+.+.+.+                        +++.|+
T Consensus        31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (142)
T 3eur_A           31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD  110 (142)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence            4799999999999999999999999   9999976689999999987643                        477899


Q ss_pred             CcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHH
Q psy16770        200 VGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFR  233 (554)
Q Consensus       200 v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~  233 (554)
                      |.+ +|+++++ ++|+++....   +.+.|.+|++
T Consensus       111 v~~-~P~~~lid~~G~i~~~~~---~~~~l~~~l~  141 (142)
T 3eur_A          111 LRA-IPTLYLLDKNKTVLLKDA---TLQKVEQYLA  141 (142)
T ss_dssp             CTT-CSEEEEECTTCBEEEEEE---CHHHHHHHHH
T ss_pred             CCc-CCeEEEECCCCcEEecCC---CHHHHHHHHh
Confidence            997 9999998 7788766553   4588888875

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.04  E-value=6.7e-10  Score=99.66  Aligned_cols=85  Identities=13%  Similarity=0.160  Sum_probs=72.9

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH-----------------------HHHHhCCcCC
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG-----------------------LARRLGVGSQ  203 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~-----------------------l~~~~~v~~~  203 (554)
                      +++++|.||++||++|+...|.+.++++++++.++.+..|+++...+                       ++++|+|.+ 
T Consensus        35 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~-  113 (152)
T 2lrt_A           35 GKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTN-  113 (152)
T ss_dssp             GSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCS-
T ss_pred             CCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCccc-
Confidence            56899999999999999999999999999987679999999988664                       899999997 


Q ss_pred             CCcceec-cCCeEEEEeCCcccHHHHHHHH
Q psy16770        204 LPQIALL-TDGRTSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       204 ~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl  232 (554)
                      +|+++++ ++|+++....|..+.++...-+
T Consensus       114 ~P~~~lid~~G~i~~~~~g~~~~e~~~~~~  143 (152)
T 2lrt_A          114 LPSVFLVNRNNELSARGENIKDLDEAIKKL  143 (152)
T ss_dssp             CSEEEEEETTTEEEEETTTCSCHHHHHHHH
T ss_pred             CceEEEECCCCeEEEecCCHHHHHHHHHHH
Confidence            9999999 7899888777766666654433

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.03  E-value=2.8e-10  Score=100.40  Aligned_cols=87  Identities=14%  Similarity=0.337  Sum_probs=70.5

Q ss_pred             CCCcEEEEEEcccccccccchHHHHH---HHHHhCCCCEEEEEEEecCcHHH------------------------HHHh
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKK---LMDELSPLGVGFFTVHVHNEQGL------------------------ARRL  198 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~---~a~~l~~~~v~~~~Vd~~~~~~l------------------------~~~~  198 (554)
                      .+++++|.||++||++|+...|.+.+   +.+.+++.++.+..|+++.+...                        ++.|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            35799999999999999999999988   88888766799999999876544                        3389


Q ss_pred             CCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        199 GVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       199 ~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +|.+ +|+++++ ++|+++.  ++ .+.++|.+++.+..
T Consensus       106 ~v~~-~P~~~lid~~G~i~~--~~-~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          106 DIRA-TPTIYLLDGRKRVIL--KD-TSMEQLIDYLATQA  140 (142)
T ss_dssp             CCCS-SSEEEEECTTCBEEE--CS-CCHHHHHHHHHC--
T ss_pred             CCCC-CCeEEEECCCCCEEe--cC-CCHHHHHHHHHHHc
Confidence            9997 9999999 6887755  33 47799999987654

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.03  E-value=5.2e-09  Score=102.25  Aligned_cols=195  Identities=14%  Similarity=0.164  Sum_probs=135.9

Q ss_pred             ccccc-cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLSTT-HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~Lt-~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +..|+ .+++++.+   ..+++++|-|+++|   |....+.|.++|..+++ .+.|+.+   .+..+++++++++  |++
T Consensus         8 v~~l~s~~~~~~~l---~~~~v~vvgff~~~---~~~~~~~f~~~A~~lr~-~~~F~~~---~~~~v~~~~~~~~--p~i   75 (252)
T 2h8l_A            8 SVPLRTEEEFKKFI---SDKDASIVGFFDDS---FSEAHSEFLKAASNLRD-NYRFAHT---NVESLVNEYDDNG--EGI   75 (252)
T ss_dssp             EEECCSHHHHHHHH---TSSSCEEEEEESCT---TSHHHHHHHHHHHHTTT-TSCEEEE---CCHHHHHHHCSSS--EEE
T ss_pred             ceeecCHHHHHHHh---hcCCeEEEEEECCC---CChHHHHHHHHHHhccc-CcEEEEE---ChHHHHHHhCCCC--CcE
Confidence            55664 45566656   45678999999998   55677899999999976 3788877   3678999999984  999


Q ss_pred             eeccC--------CeEEEE-eCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEe-cC-Cch---
Q psy16770        208 ALLTD--------GRTSFF-KEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQ-RS-LPV---  273 (554)
Q Consensus       208 ~~~~~--------g~~~~y-~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~-~~-~~~---  273 (554)
                      ++|+.        .....| .|. .+.++|.+|+....-|. +..+|.+++..+.     ....+++++. +. ...   
T Consensus        76 ~~fk~~~~~~kf~e~~~~y~~g~-~~~~~l~~fi~~~~~Pl-v~e~t~~n~~~~~-----~~~~~v~~~~~~~~~~~~~~  148 (252)
T 2h8l_A           76 ILFRPSHLTNKFEDKTVAYTEQK-MTSGKIKKFIQENIFGI-CPHMTEDNKDLIQ-----GKDLLIAYYDVDYEKNAKGS  148 (252)
T ss_dssp             EEECCGGGCCTTSCSEEECCCSS-CCHHHHHHHHHHHSSCS-SCEECTTTHHHHS-----SSSEEEEEECCBTTTBHHHH
T ss_pred             EEEcchhhcccccccccccCCCC-cCHHHHHHHHHhcccCC-eeecccccHhhhc-----CCCeEEEEeecchhhcchhH
Confidence            99974        245667 665 58899999999988766 7788899888763     2233334442 11 111   


Q ss_pred             -hHHHHH--HhhccCCc---eEEEEEEccCCCChhHHhHhCC--C-CCCceEEEEeCCCCCCCceeecCCCChhH--HHh
Q psy16770        274 -RLRYLI--NAFKHRTT---IVFGVIVYDQEDSSSVFQRFKV--P-GDKDSLLIFKEDKDRPSASITMNSIPVPT--LQD  342 (554)
Q Consensus       274 -~~~~~~--~a~~~~~~---v~Fg~v~~~~~~~~~l~~k~~i--~-~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~--l~~  342 (554)
                       .++...  .|.+++++   +.|++++.+  ....+.+.||+  + ...|+++++.....   .+...++++.+.  |.+
T Consensus       149 ~~~~~~~~~vA~~~~~k~~~~~F~~~d~~--~~~~~~~~fgl~~~~~~~P~v~i~~~~~~---ky~~~~~~t~~~~~i~~  223 (252)
T 2h8l_A          149 NYWRNRVMMVAKKFLDAGHKLNFAVASRK--TFSHELSDFGLESTAGEIPVVAIRTAKGE---KFVMQEEFSRDGKALER  223 (252)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCEEEEEETT--TTHHHHGGGTCCCCSCSSCEEEEECTTSC---EEECCSCCCTTSHHHHH
T ss_pred             HHHHHHHHHHHHHccccCceEEEEEEchH--HHHHHHHHcCCCCccCCCCEEEEEeCcCc---EecCCcccCcchHHHHH
Confidence             122221  22255555   999999976  56678999999  3 25899999864222   233446777777  999


Q ss_pred             HHhcC
Q psy16770        343 ITDNN  347 (554)
Q Consensus       343 fi~~~  347 (554)
                      |++..
T Consensus       224 F~~~~  228 (252)
T 2h8l_A          224 FLQDY  228 (252)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99764

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=99.03  E-value=1.1e-09  Score=97.78  Aligned_cols=134  Identities=13%  Similarity=0.144  Sum_probs=86.3

Q ss_pred             HHhcCCCcccccccchhhhhhcCCCCceEEEEEcC-CCCcchhHHHHHHHHHhhccCCCCceEEEEEec--ccchHHHHh
Q psy16770        343 ITDNNPYLTLPRISSQSMLDAVCPVKKLCVVLFSE-DSPEHDASRHTLRRFAQESRFVHNNIAFMYVFI--EKQPEFVNA  419 (554)
Q Consensus       343 fi~~~~~~~v~~lt~~~~~~~~c~~~~lcvvl~~~-~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~--~~q~~~~~~  419 (554)
                      -++.|.+|+++++|.++.....-..-...+++|.. ...+.+..++.++++|++  |++ ++.|+++|.  +.....++.
T Consensus         7 ~~~~~~~PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~--fkg-ki~Fv~vd~~~~~~~~~l~~   83 (147)
T 3bj5_A            7 HMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAES--FKG-KILFAFIDSDHTDNQRILEF   83 (147)
T ss_dssp             --------CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHT--TTT-TCEEEEECTTCGGGHHHHHH
T ss_pred             chhhccCCeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHH--cCC-ceEEEEEecchHhHHHHHHH
Confidence            35678899999999876533211011333444553 334567789999999999  975 599999999  555566777


Q ss_pred             hCCCCCCccccceEEEEEEec--CCCeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCCCccccccccch-hhh
Q psy16770        420 LTSPEDSSEISLHIAAMWRMD--YKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEI-SDE  494 (554)
Q Consensus       420 ~~~~~~~~~~~~~~~~v~~~~--~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~~~~~~~~lp~~-~de  494 (554)
                      |    |..+  ..+|++.+.+  .++.||.+ +..        ++|.+.|.+|+++++.|+..|.-++++||+- +|+
T Consensus        84 f----Gl~~--~~~P~v~i~~~~~~~~Ky~~-~~~--------~~t~~~i~~Fv~d~l~GkL~p~~KSEpiPe~wn~~  146 (147)
T 3bj5_A           84 F----GLKK--EECPAVRLITLEEEMTKYKP-ESE--------ELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQ  146 (147)
T ss_dssp             T----TCCG--GGCSEEEEEECSSSCEEECC-SCC--------CCCHHHHHHHHHHHHTTCSCEEECCSCCCGGGC--
T ss_pred             c----CCCc--ccCCEEEEEecccccccCCC-Ccc--------cCCHHHHHHHHHHHHcCCccccccCCCCCCCcCCC
Confidence            6    3111  2455554444  34678853 322        5688999999999999999999999999997 765

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.01  E-value=6.2e-09  Score=101.58  Aligned_cols=195  Identities=8%  Similarity=0.020  Sum_probs=136.9

Q ss_pred             ccccc-cccccccccCCCC-CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        129 KLSTT-HWNFEKNYIPKSY-TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       129 ~~~Lt-~~~F~~~v~~~~~-~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      +..|+ .+++++.+   +. +++++|-|+.++   |....+.|.++|+.+++ .+.|+.+   .+.+++.++++++  |+
T Consensus         8 v~~l~s~~~~~~~~---~~~~~v~vVgff~~~---~~~~~~~F~~~A~~lr~-~~~F~~t---~~~~v~~~~~v~~--p~   75 (250)
T 3ec3_A            8 SKEILTLKQVQEFL---KDGDDVVILGVFQGV---GDPGYLQYQDAANTLRE-DYKFHHT---FSTEIAKFLKVSL--GK   75 (250)
T ss_dssp             SEECCCHHHHHHHH---HHCSSCEEEEECSCT---TCHHHHHHHHHHHHHTT-TCCEEEE---CCHHHHHHHTCCS--SE
T ss_pred             ceecCCHHHHHHHH---hcCCCeEEEEEEcCC---CchHHHHHHHHHHhhhc-CcEEEEE---CcHHHHHHcCCCC--Ce
Confidence            45564 47777766   34 679999999987   45788999999999976 4888875   4678999999984  99


Q ss_pred             ceeccC--------CeEEEEeC-CcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEec--CC---c
Q psy16770        207 IALLTD--------GRTSFFKE-PSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQR--SL---P  272 (554)
Q Consensus       207 i~~~~~--------g~~~~y~~-g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~--~~---~  272 (554)
                      |++|+.        .....|.| +..+.++|.+|+....-|. +..+|.++......     .++.+++|..  ..   .
T Consensus        76 ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~Pl-v~e~t~~n~~~~~~-----~~~l~~~~~~~d~~~~~~  149 (250)
T 3ec3_A           76 LVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPL-VGHRKTSNDAKRYS-----KRPLVVVYYSVDFSFDYR  149 (250)
T ss_dssp             EEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSSCT-EEEECTTTHHHHSC-----SSSEEEEEECCCCSTTTH
T ss_pred             EEEEecchhhccccccceeccCCCCCCHHHHHHHHHHcCCCc-eeecCccchhhhhc-----cCccEEEEEecccccccc
Confidence            999974        34577776 5678899999999998776 77888888877652     3455554432  11   1


Q ss_pred             h---hHHHHH--HhhccCCceEEEEEEccCCCChhHHhHhCCCCC--CceEEEEeCCCCCCCceeec-CCCChhHHHhHH
Q psy16770        273 V---RLRYLI--NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGD--KDSLLIFKEDKDRPSASITM-NSIPVPTLQDIT  344 (554)
Q Consensus       273 ~---~~~~~~--~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~--~Ptlvvfk~~~~~~~~~i~~-~~~~~~~l~~fi  344 (554)
                      .   .++...  .|-+++ ++.|++++..  ......+.||++..  .|.++++..+..   .+... ++++.+.|.+|+
T Consensus       150 ~~~~~~~~~~~~vAk~~k-ki~F~~~d~~--~~~~~l~~fgl~~~~~~p~~~~~~~~~~---ky~~~~~~~t~~~i~~Fv  223 (250)
T 3ec3_A          150 TATQFWRNKVLEVAKDFP-EYTFAIADEE--DYATEVKDLGLSESGGDVNAAILDESGK---KFAMEPEEFDSDALREFV  223 (250)
T ss_dssp             HHHHHHHHHHHHHHTTCT-TSEEEEEETT--TTHHHHHHTTCSSCSCSCEEEEECTTSC---EEECCCCSCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhc-ceeEEEEcHH--HHHHHHHHcCCCccCCCcEEEEEcCCCc---eecCCcccCCHHHHHHHH
Confidence            1   122222  223677 8999999875  45667889999742  357777753221   12233 578899999999


Q ss_pred             hcC
Q psy16770        345 DNN  347 (554)
Q Consensus       345 ~~~  347 (554)
                      +..
T Consensus       224 ~~~  226 (250)
T 3ec3_A          224 MAF  226 (250)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.00  E-value=1.1e-10  Score=115.44  Aligned_cols=74  Identities=19%  Similarity=0.361  Sum_probs=59.8

Q ss_pred             EEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec------CcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcc
Q psy16770        150 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH------NEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSF  223 (554)
Q Consensus       150 ~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~------~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~  223 (554)
                      .+|+||||||+||++++|.|++++++++       .|||+      +++++|++++|++ +||+.+  +|+.  +. |.+
T Consensus       200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l~-------~Vd~d~~d~~~~~~~la~~~gI~~-vPT~~i--~G~~--~~-G~~  266 (291)
T 3kp9_A          200 GGTMYGAYWCPHCQDQKELFGAAFDQVP-------YVECSPNGPGTPQAQECTEAGITS-YPTWII--NGRT--YT-GVR  266 (291)
T ss_dssp             TCEEEECTTCHHHHHHHHHHGGGGGGSC-------EEESCSSCSSSCCCHHHHTTTCCS-TTEEEE--TTEE--EE-SCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHcC-------EEEEeecCchhhHHHHHHHcCCcc-cCeEEE--CCEE--ec-CCC
Confidence            3799999999999999999999997763       45555      3789999999998 999655  8874  54 556


Q ss_pred             cHHHHHHHHHHhC
Q psy16770        224 SVQKMVEFFRLKL  236 (554)
Q Consensus       224 ~~~~i~~fl~~~~  236 (554)
                      +.++|.+|+.-..
T Consensus       267 ~~~~L~~~l~~~~  279 (291)
T 3kp9_A          267 SLEALAVASGYPL  279 (291)
T ss_dssp             CHHHHHHHTCCCC
T ss_pred             CHHHHHHHHCCCC
Confidence            8899999885443

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=98.98  E-value=6.5e-10  Score=98.42  Aligned_cols=73  Identities=12%  Similarity=0.233  Sum_probs=63.5

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCC-CCEEEEEEEecCc------------------------HHHHHHhCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-LGVGFFTVHVHNE------------------------QGLARRLGV  200 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~-~~v~~~~Vd~~~~------------------------~~l~~~~~v  200 (554)
                      .+++++|.||++||++|+.+.|.++++++++++ .++.+..|+++.+                        ..++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence            357999999999999999999999999999984 4799999998863                        579999999


Q ss_pred             cCCCCcceecc--CCeEEEEe
Q psy16770        201 GSQLPQIALLT--DGRTSFFK  219 (554)
Q Consensus       201 ~~~~Pti~~~~--~g~~~~y~  219 (554)
                      .+ +||++++.  +|+++...
T Consensus       107 ~~-~P~~~lid~~~G~i~~~~  126 (144)
T 1i5g_A          107 KS-IPTLVGVEADSGNIITTQ  126 (144)
T ss_dssp             CS-SSEEEEEETTTCCEEESC
T ss_pred             CC-CCEEEEEECCCCcEEecc
Confidence            97 99999994  88876655

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.97  E-value=2.7e-09  Score=95.20  Aligned_cols=86  Identities=14%  Similarity=0.247  Sum_probs=73.7

Q ss_pred             CCCcEEEEEEcccccc--cccchHHHHHHHHHh-CCCCEEEEEEEecCcH-------------------------HHHHH
Q psy16770        146 YTTPHLILFYSDWCFA--CLQVEPIFKKLMDEL-SPLGVGFFTVHVHNEQ-------------------------GLARR  197 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~--C~~l~p~~~~~a~~l-~~~~v~~~~Vd~~~~~-------------------------~l~~~  197 (554)
                      .+++++|.||++||++  |+...|.+.++.+++ ++.++.+..|+++..+                         .+++.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            3579999999999999  999999999999999 7667999999998764                         79999


Q ss_pred             hCCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        198 LGVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      |+|.+ +|+++++ ++|+.+....   +.+.+.+.+.+.
T Consensus       112 ~~v~~-~P~~~lid~~G~i~~~~~---~~~~l~~~l~~l  146 (150)
T 3fw2_A          112 YSIYK-IPANILLSSDGKILAKNL---RGEELKKKIENI  146 (150)
T ss_dssp             TTCCS-SSEEEEECTTSBEEEESC---CHHHHHHHHHHH
T ss_pred             cCCCc-cCeEEEECCCCEEEEccC---CHHHHHHHHHHH
Confidence            99997 9999999 7898876653   557777777654

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.97  E-value=8.5e-10  Score=97.52  Aligned_cols=74  Identities=15%  Similarity=0.390  Sum_probs=63.8

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhC-CCCEEEEEEEecCc------------------------HHHHHHhCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELS-PLGVGFFTVHVHNE------------------------QGLARRLGV  200 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~-~~~v~~~~Vd~~~~------------------------~~l~~~~~v  200 (554)
                      .+++++|.||++||++|+.+.|.+++++++++ ..++.+..|+++.+                        ..++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            45789999999999999999999999999997 24699999998863                        479999999


Q ss_pred             cCCCCcceecc--CCeEEEEeC
Q psy16770        201 GSQLPQIALLT--DGRTSFFKE  220 (554)
Q Consensus       201 ~~~~Pti~~~~--~g~~~~y~~  220 (554)
                      .+ +||++++.  +|+.+...+
T Consensus       107 ~~-~Pt~~lid~~~G~i~~~~~  127 (144)
T 1o73_A          107 ES-IPTLITINADTGAIIGTQA  127 (144)
T ss_dssp             CS-SSEEEEEETTTCCEEESCH
T ss_pred             CC-CCEEEEEECCCCeEEecch
Confidence            97 99999997  788776553

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.96  E-value=7.1e-10  Score=101.09  Aligned_cols=74  Identities=19%  Similarity=0.392  Sum_probs=64.4

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCC-CCEEEEEEEecCc------------------------HHHHHHhCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-LGVGFFTVHVHNE------------------------QGLARRLGV  200 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~-~~v~~~~Vd~~~~------------------------~~l~~~~~v  200 (554)
                      .++++||.||++||++|+.+.|.++++++++++ .++.+..|+++..                        ..++++|+|
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            467999999999999999999999999999985 4799999998876                        689999999


Q ss_pred             cCCCCcceecc-C-CeEEEEeC
Q psy16770        201 GSQLPQIALLT-D-GRTSFFKE  220 (554)
Q Consensus       201 ~~~~Pti~~~~-~-g~~~~y~~  220 (554)
                      .+ +||++++. + |+++...+
T Consensus       127 ~~-~Pt~~lid~~~G~iv~~~~  147 (165)
T 3s9f_A          127 ES-IPTLIGLNADTGDTVTTRA  147 (165)
T ss_dssp             CS-SSEEEEEETTTCCEEESCH
T ss_pred             CC-CCEEEEEeCCCCEEEeccc
Confidence            97 99999995 4 87766543

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=98.96  E-value=2.8e-08  Score=99.55  Aligned_cols=216  Identities=16%  Similarity=0.195  Sum_probs=143.3

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..+|.+++++.+..   .++++++.|...--++.+..     ..+..+.+.+.|+.++++...+.+++++|+|.+ .||
T Consensus        19 vv~lt~~~f~~~i~~---~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~-~Pt   94 (298)
T 3ed3_A           19 ISELTPKSFDKAIHN---TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNG-FPT   94 (298)
T ss_dssp             CEECCHHHHHHHHTS---SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCB-SSE
T ss_pred             eEEeCHHHHHHHHHh---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCc-cce
Confidence            677899999999853   46666776644333322221     222255667999999998666889999999997 999


Q ss_pred             EEEEeCCCC--------------CCCceeecCCCChhHHHhHHhcCCCcccccccchhhhhhcCCC-CceEEEEEcCCCC
Q psy16770        316 LLIFKEDKD--------------RPSASITMNSIPVPTLQDITDNNPYLTLPRISSQSMLDAVCPV-KKLCVVLFSEDSP  380 (554)
Q Consensus       316 lvvfk~~~~--------------~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~c~~-~~lcvvl~~~~~~  380 (554)
                      +++|+++..              ......+.|..+.+.|.+|+....-+.+.++++.+.++..... ...+|++|.... 
T Consensus        95 ~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~~~~~~vi~fs~~~-  173 (298)
T 3ed3_A           95 LMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQD-  173 (298)
T ss_dssp             EEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTSCSSEEEEEEESSS-
T ss_pred             EEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhcCCceEEEEEcCCC-
Confidence            999997541              1123467889999999999999988888888776555544322 367888874332 


Q ss_pred             cchhHHHHHHHHHhhccCCCCceEEEEEecccchHHH--HhhCCCCCCcc------------ccceEEEEEEecCCCeeE
Q psy16770        381 EHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFV--NALTSPEDSSE------------ISLHIAAMWRMDYKKIKY  446 (554)
Q Consensus       381 ~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~--~~~~~~~~~~~------------~~~~~~~v~~~~~~~~ky  446 (554)
                         .....|+++|..  +++ .+.|+.+...+-....  +.|...  .++            .....|.|+.......++
T Consensus       174 ---~~~~~f~~~A~~--~~~-~~~F~~v~~~~~a~~~~~~~~~~~--~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~  245 (298)
T 3ed3_A          174 ---KISPVYKSIALD--WLG-KFDFYSISNKKLKQLTDMNPTYEK--TPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKF  245 (298)
T ss_dssp             ---SCCHHHHHHHHH--TBT-TEEEEEEEGGGCCCCCTTCTTSTT--CHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEE
T ss_pred             ---cchHHHHHHHHH--hhc-CcEEEEEcchHhhhhhhhhhhccc--CcchhhhhhcccccccccCCCeEEEEcCCCCce
Confidence               345789999998  865 5999999865432211  111000  000            002345554444455667


Q ss_pred             EEecCCCCCcccccchhhHHHHHHHHhhhcC
Q psy16770        447 GWLLGDAVDDWKDYNTTKDRLDAGLRSLVND  477 (554)
Q Consensus       447 ~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g  477 (554)
                      ..++|.        .++++.|.+||..-...
T Consensus       246 ~~y~g~--------~~~~~~i~~fi~~~~~~  268 (298)
T 3ed3_A          246 WEYEGN--------SINKNDISKFLRDTFSI  268 (298)
T ss_dssp             EECCCS--------SCCHHHHHHHHHHHHTC
T ss_pred             EEeccc--------cCCHHHHHHHHHhhcCC
Confidence            677753        46899999999865544

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.96  E-value=6.9e-10  Score=98.57  Aligned_cols=73  Identities=16%  Similarity=0.304  Sum_probs=63.4

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCC-CCEEEEEEEecCc------------------------HHHHHHhCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSP-LGVGFFTVHVHNE------------------------QGLARRLGV  200 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~-~~v~~~~Vd~~~~------------------------~~l~~~~~v  200 (554)
                      .+++++|.||++||++|+.+.|.++++++++++ .++.+..|+++.+                        ..++++|+|
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            457999999999999999999999999999983 4699999998863                        579999999


Q ss_pred             cCCCCcceecc--CCeEEEEe
Q psy16770        201 GSQLPQIALLT--DGRTSFFK  219 (554)
Q Consensus       201 ~~~~Pti~~~~--~g~~~~y~  219 (554)
                      .+ +||++++.  +|+++...
T Consensus       107 ~~-~Pt~~lid~~~G~i~~~~  126 (146)
T 1o8x_A          107 ES-IPTLIGVDADSGDVVTTR  126 (146)
T ss_dssp             CS-SSEEEEEETTTCCEEESC
T ss_pred             CC-CCEEEEEECCCCeEEEec
Confidence            97 99999995  78876654

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.95  E-value=8.9e-10  Score=98.64  Aligned_cols=87  Identities=11%  Similarity=0.317  Sum_probs=70.2

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-----------------------CcHHHHHHhCCcC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-----------------------NEQGLARRLGVGS  202 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-----------------------~~~~l~~~~~v~~  202 (554)
                      .+++++|.||++||++|+.+.|.++++++.  + ++.+..|+++                       .+..++++|+|.+
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  117 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--K-RFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYG  117 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--T-TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--C-CeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCc
Confidence            367999999999999999999999998876  2 4788887764                       4568999999997


Q ss_pred             CCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        203 QLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       203 ~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                       +|+++++ ++|+.+....|..+.+.+.+++.+.+
T Consensus       118 -~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l  151 (156)
T 1kng_A          118 -VPETFVVGREGTIVYKLVGPITPDNLRSVLLPQM  151 (156)
T ss_dssp             -SCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             -cCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence             9976665 88988766556668888888887654

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.93  E-value=2.6e-09  Score=98.93  Aligned_cols=92  Identities=13%  Similarity=0.303  Sum_probs=75.1

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-----HHHHHHhCCc-------------------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-----QGLARRLGVG-------------------  201 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-----~~l~~~~~v~-------------------  201 (554)
                      .+++++|.||++||++|+...|.++++.+.++..++.+..|+++.+     ..+++++++.                   
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            3568999999999999999999999999999865799999999865     5677888874                   


Q ss_pred             ----CCCCcceec-cCCeEEEEeCCccc--HHHHHHHHHHhCCC
Q psy16770        202 ----SQLPQIALL-TDGRTSFFKEPSFS--VQKMVEFFRLKLPY  238 (554)
Q Consensus       202 ----~~~Pti~~~-~~g~~~~y~~g~~~--~~~i~~fl~~~~~~  238 (554)
                          + +|+++++ ++|+++..+.|..+  .+++.+++++.+..
T Consensus       139 ~~~~~-~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~  181 (186)
T 1jfu_A          139 GRALG-MPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGK  181 (186)
T ss_dssp             TCCSS-SSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred             cccCC-CCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence                7 9999888 88988665544433  68899999887654

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.92  E-value=1.7e-09  Score=110.51  Aligned_cols=90  Identities=17%  Similarity=0.162  Sum_probs=77.5

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------------cHHHHHHh
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------------EQGLARRL  198 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------------~~~l~~~~  198 (554)
                      .++++||.||++||++|+.+.|.++++++++++.++.++.|+++.                           +..++++|
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            367999999999999999999999999999986679999998752                           45799999


Q ss_pred             CCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        199 GVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       199 ~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +|.+ +|+++++ ++|+++....|..+.+.|.++|++.+
T Consensus       161 gV~~-~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL  198 (352)
T 2hyx_A          161 RNRY-WPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL  198 (352)
T ss_dssp             TCCE-ESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHH
T ss_pred             CCCc-cCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            9997 9998888 88998777666668888888887764

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.91  E-value=2.7e-09  Score=94.37  Aligned_cols=84  Identities=10%  Similarity=0.174  Sum_probs=69.4

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc--------------------------HHHHHHhC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE--------------------------QGLARRLG  199 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~--------------------------~~l~~~~~  199 (554)
                      .+++++|.||++||++|+...|.+.++.+++++.++.+..|+++.+                          ..+++.|+
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            3579999999999999999999999999999876899999988753                          35889999


Q ss_pred             CcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHH
Q psy16770        200 VGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFR  233 (554)
Q Consensus       200 v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~  233 (554)
                      |.+ +|+.+++ ++|+++....   ..+++.+++.
T Consensus       111 v~~-~P~~~lid~~G~i~~~~~---~~~~l~~~l~  141 (143)
T 4fo5_A          111 LRK-GFKNFLINDEGVIIAANV---TPEKLTEILK  141 (143)
T ss_dssp             GGG-CCCEEEECTTSBEEEESC---CHHHHHHHHT
T ss_pred             CCC-CCcEEEECCCCEEEEccC---CHHHHHHHHH
Confidence            997 9998888 5888776543   3466766664

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.91  E-value=2e-09  Score=99.15  Aligned_cols=86  Identities=20%  Similarity=0.341  Sum_probs=70.9

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe-----------------------cCcHHHHHHhCCcC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV-----------------------HNEQGLARRLGVGS  202 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~-----------------------~~~~~l~~~~~v~~  202 (554)
                      .+++++|.||++||++|+...|.+++++++    ++.+..|++                       +.+..+++.|+|.+
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  132 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ----GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYG  132 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC----CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCC
Confidence            357999999999999999999999999886    478888875                       44668999999997


Q ss_pred             CCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        203 QLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       203 ~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                       +|+++++ ++|++.....|..+.+.+.+++.+.+
T Consensus       133 -~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  166 (176)
T 3kh7_A          133 -APETYLIDKQGIIRHKIVGVVDQKVWREQLAPLY  166 (176)
T ss_dssp             -SCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHH
T ss_pred             -CCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence             9977776 78988766656668888888877654

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.91  E-value=1.4e-09  Score=101.61  Aligned_cols=88  Identities=16%  Similarity=0.312  Sum_probs=74.8

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-----------------------------CcHHHHHHhC
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-----------------------------NEQGLARRLG  199 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-----------------------------~~~~l~~~~~  199 (554)
                      +++|.||++||++|+...|.++++.+++.+.++.+..|+++                             .+..++++|+
T Consensus        48 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  127 (196)
T 2ywi_A           48 ATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYD  127 (196)
T ss_dssp             EEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHT
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhC
Confidence            59999999999999999999999999998667999999983                             4568999999


Q ss_pred             CcCCCCcceec-cCCeEEEE---------eCCcccHHHHHHHHHHhCC
Q psy16770        200 VGSQLPQIALL-TDGRTSFF---------KEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       200 v~~~~Pti~~~-~~g~~~~y---------~~g~~~~~~i~~fl~~~~~  237 (554)
                      |.+ +|+++++ ++|+++..         ..|..+.+.|.+.+++.+.
T Consensus       128 v~~-~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~  174 (196)
T 2ywi_A          128 AAC-TPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLE  174 (196)
T ss_dssp             CCE-ESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHH
T ss_pred             CCC-CCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHc
Confidence            997 9999998 78988765         3355577889888887754

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.85  E-value=4.3e-09  Score=97.69  Aligned_cols=89  Identities=11%  Similarity=0.125  Sum_probs=73.6

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe-----------------------------cCcHHHHHH
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV-----------------------------HNEQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~-----------------------------~~~~~l~~~  197 (554)
                      +++++|.||++||++|+...|.++++++++.+. +.+..|++                             +.+..+++.
T Consensus        33 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  111 (188)
T 2cvb_A           33 EPLLAVVFMCNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  111 (188)
T ss_dssp             SSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence            479999999999999999999999999999876 99999998                             345679999


Q ss_pred             hCCcCCCCcceec-cCCeEEEEeCC---------cccHHHHHHHHHHhCCC
Q psy16770        198 LGVGSQLPQIALL-TDGRTSFFKEP---------SFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       198 ~~v~~~~Pti~~~-~~g~~~~y~~g---------~~~~~~i~~fl~~~~~~  238 (554)
                      |+|.+ +|+++++ ++|+++.. |.         ..+.+.|.+.+++.+..
T Consensus       112 ~~v~~-~P~~~lid~~G~i~~~-g~~~~~~~~~g~~~~~~l~~~i~~ll~~  160 (188)
T 2cvb_A          112 YRALR-TPEVFLFDERRLLRYH-GRVNDNPKDPSKVQSHDLEAAIEALLRG  160 (188)
T ss_dssp             TTCCE-ESEEEEECTTCBEEEE-ECSSSCTTCGGGCCCCHHHHHHHHHHTT
T ss_pred             cCCCC-CCeEEEECCCCcEEEE-EecCCccccccccCHHHHHHHHHHHHcC
Confidence            99997 9999998 78887655 32         12457888888776543

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.85  E-value=2.3e-09  Score=89.10  Aligned_cols=81  Identities=16%  Similarity=0.204  Sum_probs=65.7

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec--CcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcc
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH--NEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSF  223 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~--~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~  223 (554)
                      ...+.++.|+++||++|+++.|.++++++     ++.+..||.+  ++++++++|| .+ +|++  +.+|+.. ..++ .
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~-----~i~~~~vdi~~~~~~el~~~~g-~~-vP~l--~~~g~~~-~~~g-~   82 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD-----RFILQEVDITLPENSTWYERYK-FD-IPVF--HLNGQFL-MMHR-V   82 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSS-----SSEEEEEETTSSTTHHHHHHSS-SS-CSEE--EESSSEE-EESS-C
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhh-----CCeEEEEECCCcchHHHHHHHC-CC-CCEE--EECCEEE-EecC-C
Confidence            45678999999999999999998876543     4899999998  7899999999 97 9986  4678765 4555 4


Q ss_pred             cHHHHHHHHHHhCC
Q psy16770        224 SVQKMVEFFRLKLP  237 (554)
Q Consensus       224 ~~~~i~~fl~~~~~  237 (554)
                      +.+.|.+++.+.+.
T Consensus        83 ~~~~l~~~l~~~~~   96 (100)
T 1wjk_A           83 NTSKLEKQLRKLSG   96 (100)
T ss_dssp             CHHHHHHHHHSSSC
T ss_pred             CHHHHHHHHHHHHh
Confidence            77899999986653

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.30  E-value=4.9e-10  Score=98.78  Aligned_cols=74  Identities=18%  Similarity=0.407  Sum_probs=62.0

Q ss_pred             CC-cEEEEEEcccccccccchHHHHHHHHHhC--CCCEEEEEEEecCc-------------------------HHHHHHh
Q psy16770        147 TT-PHLILFYSDWCFACLQVEPIFKKLMDELS--PLGVGFFTVHVHNE-------------------------QGLARRL  198 (554)
Q Consensus       147 ~~-~~lV~Fya~wC~~C~~l~p~~~~~a~~l~--~~~v~~~~Vd~~~~-------------------------~~l~~~~  198 (554)
                      ++ +++|.||++||++|+.+.|.++++++.++  +.++.+..|+++.+                         ..++++|
T Consensus        25 gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (143)
T 2lus_A           25 DKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKY  104 (143)
Confidence            45 89999999999999999999999999884  23588888888755                         3799999


Q ss_pred             CCcCCCCcceecc-CCeEEEEeCC
Q psy16770        199 GVGSQLPQIALLT-DGRTSFFKEP  221 (554)
Q Consensus       199 ~v~~~~Pti~~~~-~g~~~~y~~g  221 (554)
                      +|.+ +|+++++. +|+++...+.
T Consensus       105 ~v~~-~P~~~lid~~G~i~~~~~~  127 (143)
T 2lus_A          105 GITG-IPALVIVKKDGTLISMNGR  127 (143)
Confidence            9997 99999995 8887766543

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.81  E-value=1.2e-08  Score=97.31  Aligned_cols=90  Identities=14%  Similarity=0.268  Sum_probs=73.9

Q ss_pred             CC-cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe-----------------------------cCcHHHHH
Q psy16770        147 TT-PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV-----------------------------HNEQGLAR  196 (554)
Q Consensus       147 ~~-~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~-----------------------------~~~~~l~~  196 (554)
                      ++ ++||.||++||++|+...|.++++++++++.++.++.|++                             +.+..+++
T Consensus        58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  137 (218)
T 3u5r_E           58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAK  137 (218)
T ss_dssp             TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHH
Confidence            44 5999999999999999999999999999887899999998                             34678999


Q ss_pred             HhCCcCCCCcceec-cCCeEEEEeCC----------cccHHHHHHHHHHhCCC
Q psy16770        197 RLGVGSQLPQIALL-TDGRTSFFKEP----------SFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       197 ~~~v~~~~Pti~~~-~~g~~~~y~~g----------~~~~~~i~~fl~~~~~~  238 (554)
                      .|+|.+ +|+++++ ++|+++ |.|.          ..+.+.|.+.|++.+..
T Consensus       138 ~~~v~~-~P~~~liD~~G~i~-~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~  188 (218)
T 3u5r_E          138 AYGAAC-TPDFFLYDRERRLV-YHGQFDDARPGNGKDVTGADLRAAVDAVLKG  188 (218)
T ss_dssp             HHTCCE-ESEEEEECTTCBEE-EEECSSSCCTTSCCCCCCHHHHHHHHHHHTT
T ss_pred             HcCCCC-CCeEEEECCCCcEE-EeccccccccccccccCHHHHHHHHHHHHcC
Confidence            999997 9999999 788876 4332          23457788888776543

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.80  E-value=1.4e-09  Score=86.30  Aligned_cols=73  Identities=19%  Similarity=0.337  Sum_probs=53.3

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-CcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-NEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKM  228 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i  228 (554)
                      ++.||++||++|+.+.|.++++++++.. .+.+..||.+ .+.++++++|+.+ +||+++  +|+... .|+..+.++|
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~gv~~-vPt~~i--~g~~~~-~G~~~~~~~l   77 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSKY-TVEIVHLGTDKARIAEAEKAGVKS-VPALVI--DGAAFH-INFGAGIDDL   77 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTTE-EEEEEETTTCSSTHHHHHHHTCCE-EEEEEE--TTEEEE-EEEEEEHHHH
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcCC-eEEEEEecCChhhHHHHHHcCCCc-CCEEEE--CCEEEE-eccCcCHHHh
Confidence            6779999999999999999988766531 2444444443 5788999999997 999877  787543 4443354554

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.79  E-value=1.1e-09  Score=93.18  Aligned_cols=79  Identities=14%  Similarity=0.328  Sum_probs=57.2

Q ss_pred             CcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-----HHHHHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770        148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-----QGLARRLGVGSQLPQIALLTDGRTSFFKEPS  222 (554)
Q Consensus       148 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-----~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~  222 (554)
                      +++++ ||++||++|+.+.|.+++++.     .+.+..||.+.+     ..+++++|+.+ +||+  |.+|+.+....|.
T Consensus        20 ~~vv~-f~a~~C~~C~~~~~~l~~~~~-----~~~~v~v~~~~~~~~~~~~l~~~~~v~~-~Pt~--~~~g~~v~~~~~~   90 (116)
T 2e7p_A           20 APVVV-FSKTYCGYCNRVKQLLTQVGA-----SYKVVELDELSDGSQLQSALAHWTGRGT-VPNV--FIGGKQIGGCDTV   90 (116)
T ss_dssp             SSEEE-EECTTCHHHHHHHHHHHHHTC-----CCEEEEGGGSTTHHHHHHHHHHHHSCCS-SCEE--EETTEEEECHHHH
T ss_pred             CCEEE-EECCCChhHHHHHHHHHHcCC-----CeEEEEccCCCChHHHHHHHHHHhCCCC-cCEE--EECCEEECChHHH
Confidence            45555 999999999999999988743     245666666655     57999999997 9999  5688776544333


Q ss_pred             c---cHHHHHHHHHHh
Q psy16770        223 F---SVQKMVEFFRLK  235 (554)
Q Consensus       223 ~---~~~~i~~fl~~~  235 (554)
                      .   +.+.|.+++.+.
T Consensus        91 ~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           91 VEKHQRNELLPLLQDA  106 (116)
T ss_dssp             HHHHHTTCHHHHHHHT
T ss_pred             HHHHhCChHHHHHHHc
Confidence            2   445677777653

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=7.2e-10  Score=99.92  Aligned_cols=88  Identities=9%  Similarity=0.215  Sum_probs=68.4

Q ss_pred             CCCcEEEEEEcccccccccchHHHHH-HHHHhC-CCCEEEEEEEecCcHHHHHHhC------------------------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKK-LMDELS-PLGVGFFTVHVHNEQGLARRLG------------------------  199 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~-~a~~l~-~~~v~~~~Vd~~~~~~l~~~~~------------------------  199 (554)
                      .+++++|.||++||++|+...|.+++ +.+.++ ..++.++.|+++...+.++++.                        
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            35689999999999999999999998 888877 5579999999887655444444                        


Q ss_pred             CcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        200 VGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       200 v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      +.+ +|+++++ ++|+.+....|. +.+++.+++.+.
T Consensus       112 ~~~-~P~~~lid~~G~i~~~~~g~-~~~~l~~~l~~l  146 (159)
T 2ls5_A          112 DAG-ITRNVLIDREGKIVKLTRLY-NEEEFASLVQQI  146 (159)
Confidence            676 9999988 789887666663 556666666543

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.77  E-value=9.6e-09  Score=93.50  Aligned_cols=89  Identities=20%  Similarity=0.308  Sum_probs=73.4

Q ss_pred             CCCcEEEEEEcccccc-cccchHHHHHHHHHhCCC---CEEEEEEEecCc----------------------------HH
Q psy16770        146 YTTPHLILFYSDWCFA-CLQVEPIFKKLMDELSPL---GVGFFTVHVHNE----------------------------QG  193 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~-C~~l~p~~~~~a~~l~~~---~v~~~~Vd~~~~----------------------------~~  193 (554)
                      .+++++|.||++||++ |+...|.+.++.++++..   ++.+..|+++.+                            ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            3579999999999997 999999999999998743   599999998743                            36


Q ss_pred             HHHHhCC---------------cCCCCcceeccCCeEEEEeCCcc--cHHHHHHHHHHh
Q psy16770        194 LARRLGV---------------GSQLPQIALLTDGRTSFFKEPSF--SVQKMVEFFRLK  235 (554)
Q Consensus       194 l~~~~~v---------------~~~~Pti~~~~~g~~~~y~~g~~--~~~~i~~fl~~~  235 (554)
                      ++++||+               .+ .|+++++.+|+++..+.|..  +.+.|.+.+++.
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~-~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDH-TATTFVVKEGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEE-CCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEec-CCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHh
Confidence            7777774               55 89999988888877776666  778899888765

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.74  E-value=1.1e-07  Score=98.53  Aligned_cols=194  Identities=8%  Similarity=0.031  Sum_probs=119.3

Q ss_pred             ccccc-cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLSTT-HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~Lt-~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +..++ .++++. +   ..+++++|.||+++|..+   .+.|.++|..+++. +.|+.+.+    ++++++++++ +| +
T Consensus       120 v~~l~~~~~l~~-l---~~~~~~~v~ff~~~~~~~---~~~f~~~A~~~~~~-~~F~~~~~----~~~~~~~v~~-~p-i  185 (382)
T 2r2j_A          120 IQEIRDLAEITT-L---DRSKRNIIGYFEQKDSDN---YRVFERVANILHDD-CAFLSAFG----DVSKPERYSG-DN-I  185 (382)
T ss_dssp             CEEC----------------CCEEEEEESCSSSHH---HHHHHHHHHHHTTT-CEEEEEES----CC---------CE-E
T ss_pred             ceecCCHHHHHH-h---cCCCCEEEEEECCCCChh---HHHHHHHHHHhhcc-ceEEEEeh----hhHHhhCCCC-Cc-e
Confidence            34453 356766 4   356789999999886543   67899999999873 78887776    3678899997 99 6


Q ss_pred             eeccC---CeEEEEeCCcccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCc-hh---HHH-HH
Q psy16770        208 ALLTD---GRTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLP-VR---LRY-LI  279 (554)
Q Consensus       208 ~~~~~---g~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~-~~---~~~-~~  279 (554)
                      ++...   +....|.|+..+.++|.+|+.....|. +..+|.+++.+++.    ...+.+++|..... ..   +.. ..
T Consensus       186 ~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~-v~elt~~~~~~~~~----~~~~~~v~f~~~~~~~~~~~~~~~~~  260 (382)
T 2r2j_A          186 IYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPL-VREITFENGEELTE----EGLPFLILFHMKEDTESLEIFQNEVA  260 (382)
T ss_dssp             EEECSSSSSCCEECCSCTTCHHHHHHHHHHHHSCS-SEECCHHHHHHHHT----TCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred             EECCCCCCCcCcccCCCCCCHHHHHHHHHhcccCc-eEecChhhHHHHhc----CCCcEEEEEecCCchHHHHHHHHHHH
Confidence            55553   235677776548899999999887766 77888988888763    45566565554332 21   211 12


Q ss_pred             H-hhccCCceEEEEEEccCCCChhHHhHhCCCC-CCceEEEEeCCCCCCCceee---cCCCChhHHHhHHhcC
Q psy16770        280 N-AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPG-DKDSLLIFKEDKDRPSASIT---MNSIPVPTLQDITDNN  347 (554)
Q Consensus       280 ~-a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~-~~Ptlvvfk~~~~~~~~~i~---~~~~~~~~l~~fi~~~  347 (554)
                      . +..+++.+.|++++++  ....+++.|+++. +.|+++++... . .  ..+   .+.++.+.|.+|++..
T Consensus       261 ~~~~~~~~~i~f~~id~~--~~~~~~~~~gl~~~~~P~i~i~~~~-~-~--y~~~~~~~~~~~~~i~~F~~d~  327 (382)
T 2r2j_A          261 RQLISEKGTINFLHADCD--KFRHPLLHIQKTPADCPVIAIDSFR-H-M--YVFGDFKDVLIPGKLKQFVFDL  327 (382)
T ss_dssp             HHTGGGTTTSEEEEEETT--TTHHHHHHTTCCGGGCSEEEEECSS-C-E--EECCCSGGGGSTTHHHHHHHHH
T ss_pred             HHHHHhCCeeEEEEEchH--HhHHHHHHcCCCccCCCEEEEEcch-h-c--CCCCccccccCHHHHHHHHHHH
Confidence            2 2256789999999987  5677889999973 48999887542 1 1  111   2234557788888753

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.74  E-value=9e-09  Score=92.35  Aligned_cols=98  Identities=15%  Similarity=0.155  Sum_probs=72.8

Q ss_pred             ccccccc-CCCCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEecC--cHHHHHHhCCcCCCCccee
Q psy16770        136 NFEKNYI-PKSYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVHN--EQGLARRLGVGSQLPQIAL  209 (554)
Q Consensus       136 ~F~~~v~-~~~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~~--~~~l~~~~~v~~~~Pti~~  209 (554)
                      +|++.+. .+..+++++|.||++||..|+.|....   .++++.++. ++.+.++|.+.  ...++++|++.+ +|++++
T Consensus        30 ~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~-~fv~v~~d~~~~~~~~l~~~y~v~~-~P~~~f  107 (153)
T 2dlx_A           30 SFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDSEEGQRYIQFYKLGD-FPYVSI  107 (153)
T ss_dssp             CHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSSHHHHHHHHHHTCCS-SSEEEE
T ss_pred             CHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc-CeEEEEEecCCHhHHHHHHHcCCCC-CCEEEE
Confidence            4444432 234588999999999999999997543   445555543 48999999876  456899999998 999999


Q ss_pred             c-cC-CeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        210 L-TD-GRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       210 ~-~~-g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      + .+ |+.+...+| .+++++++++.+.+
T Consensus       108 ld~~~G~~l~~~~g-~~~~~fl~~L~~~l  135 (153)
T 2dlx_A          108 LDPRTGQKLVEWHQ-LDVSSFLDQVTGFL  135 (153)
T ss_dssp             ECTTTCCCCEEESS-CCHHHHHHHHHHHH
T ss_pred             EeCCCCcEeeecCC-CCHHHHHHHHHHHH
Confidence            9 44 666555567 69999988887653

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.74  E-value=1.8e-08  Score=91.58  Aligned_cols=90  Identities=19%  Similarity=0.146  Sum_probs=73.4

Q ss_pred             CCCcEEEEEEcccccc-cccchHHHHHHHHHhCC----CCEEEEEEEecCc----------------------------H
Q psy16770        146 YTTPHLILFYSDWCFA-CLQVEPIFKKLMDELSP----LGVGFFTVHVHNE----------------------------Q  192 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~-C~~l~p~~~~~a~~l~~----~~v~~~~Vd~~~~----------------------------~  192 (554)
                      .+++++|.||++||++ |....|.++++.+.++.    .++.+..|+++.+                            .
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3579999999999998 99999999999999852    3699999988731                            2


Q ss_pred             HHHHHhCCcCCCC---------------cceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        193 GLARRLGVGSQLP---------------QIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       193 ~l~~~~~v~~~~P---------------ti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      .+++.|||.. .|               +++++ ++|+++..+.|..+.+.|.+.+++.+
T Consensus       105 ~~~~~~~v~~-~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  163 (171)
T 2rli_A          105 QASHSYRVYY-NAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHM  163 (171)
T ss_dssp             HHHHHSCCCC-EECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHH
T ss_pred             HHHHHhCeEE-EecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            6889999996 88               65555 88998877777778889988887664

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.73  E-value=2.7e-08  Score=90.83  Aligned_cols=90  Identities=12%  Similarity=0.039  Sum_probs=69.2

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------cHHHH-------------------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------EQGLA-------------------  195 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------~~~l~-------------------  195 (554)
                      .+++++|.||++||+.|+ ..|.++++.+++++.++.+..|+++.           ....+                   
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            357999999999999999 99999999999987679999998741           11222                   


Q ss_pred             -----------HHhCCcCCCC------cceec-cCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        196 -----------RRLGVGSQLP------QIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       196 -----------~~~~v~~~~P------ti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                                 +.+++.+ +|      +++++ ++|+++....|..+.+.|.+.+.+.+.
T Consensus       110 ~~~~~~~~~~~~~~~v~~-~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLG-LRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSS-CCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred             cchHHHHHHHhccCCcCC-CCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence                       2367887 99      66666 899988777666677888888877653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.72  E-value=7.7e-09  Score=108.13  Aligned_cols=67  Identities=42%  Similarity=0.725  Sum_probs=57.3

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh----HHHHHHHHHHHHHHcCChHHHHhhhc
Q psy16770         16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT----AQEKFLQLTEAYNILSDAERRKQYDL   82 (554)
Q Consensus        16 ~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~----~~~~~~~i~~Ay~~L~~~~~r~~yd~   82 (554)
                      ....+.|++||+.+.++.++|+++|+++++++|||+.+.+.    +.++|..|.+||++|+||++|+.||+
T Consensus       379 ~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             HHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             ccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            34569999999999999999999999999999999998644    78899999999999999999999997

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.70  E-value=2.6e-08  Score=90.43  Aligned_cols=91  Identities=14%  Similarity=0.151  Sum_probs=71.5

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC--------c---HHHHH-Hh---------------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--------E---QGLAR-RL---------------  198 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~--------~---~~l~~-~~---------------  198 (554)
                      .+++++|.||++||++|+...|.++++++++++.++.+..|+++.        .   .+.++ ++               
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  110 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGE  110 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCC
Confidence            357999999999999999999999999999987679999999852        1   23344 43               


Q ss_pred             --------------CC--cCCCC---cceec-cCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        199 --------------GV--GSQLP---QIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       199 --------------~v--~~~~P---ti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                                    ++  .+ +|   +++++ ++|+++..+.|..+.+.|.+.+++.+.
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~-~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          111 NASPLYRFLKLGKWGIFGDD-IQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             TBCHHHHHHHTHHHHTTCSC-CCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred             chHHHHHHHHhcCCCccCCc-ccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence                          44  55 78   66666 889988777676677888888887764

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.70  E-value=4.6e-08  Score=91.01  Aligned_cols=90  Identities=17%  Similarity=0.129  Sum_probs=71.4

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC--------c---HHHH-HH----------------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--------E---QGLA-RR----------------  197 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~--------~---~~l~-~~----------------  197 (554)
                      .++++||.||++||+.|+...|.++++.+++++.++.+..|+++.        .   .+.+ ++                
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~  126 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  126 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence            357999999999999999999999999999987679999999872        1   2233 33                


Q ss_pred             -------------hCCcCCCC------cceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        198 -------------LGVGSQLP------QIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       198 -------------~~v~~~~P------ti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                                   +++.+ +|      +++++ ++|+++....|..+.+.|.+.+.+.+
T Consensus       127 ~~~~~~~~l~~~~~~v~~-~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  184 (190)
T 2vup_A          127 NAHPLYEYMKKTKPGILK-TKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLL  184 (190)
T ss_dssp             TBCHHHHHHHHHSCCGGG-CCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCcCC-CccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence                         37776 88      65555 88998887767668889988888765

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.69  E-value=3.8e-08  Score=88.93  Aligned_cols=87  Identities=13%  Similarity=0.140  Sum_probs=69.4

Q ss_pred             CCc-EEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEec---------------------CcHHHHHHhCCcCC
Q psy16770        147 TTP-HLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH---------------------NEQGLARRLGVGSQ  203 (554)
Q Consensus       147 ~~~-~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~---------------------~~~~l~~~~~v~~~  203 (554)
                      +++ ++|.|| ++||++|....|.+.++++++++.++.+..|+++                     .+..+++.||+. +
T Consensus        28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-~  106 (161)
T 3drn_A           28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAK-G  106 (161)
T ss_dssp             TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCC-C
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCC-C
Confidence            345 999999 9999999999999999999998778999999987                     467899999998 6


Q ss_pred             ----CCcceec-cCCeEEEEeCC-c---ccHHHHHHHHHH
Q psy16770        204 ----LPQIALL-TDGRTSFFKEP-S---FSVQKMVEFFRL  234 (554)
Q Consensus       204 ----~Pti~~~-~~g~~~~y~~g-~---~~~~~i~~fl~~  234 (554)
                          +|+++++ ++|++.....| .   ...+++++.+.+
T Consensus       107 ~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~  146 (161)
T 3drn_A          107 FILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQ  146 (161)
T ss_dssp             SSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHH
T ss_pred             cCcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHH
Confidence                8988888 78988655544 2   234455555544

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.69  E-value=2.6e-08  Score=107.74  Aligned_cols=98  Identities=11%  Similarity=0.051  Sum_probs=79.4

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      ...++.+.++....  ......++.||++||++|+.+.|.+++++.++.  ++.+.+||.+.+++++++|+|.+ +||++
T Consensus       101 ~~~~~~~~~~~i~~--~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~~~~~~~~~~~i~s-vPt~~  175 (521)
T 1hyu_A          101 PSKEAQSLLEQIRD--IDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGTFQNEITERNVMG-VPAVF  175 (521)
T ss_dssp             CCCSCHHHHHHHHH--CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTTCHHHHHHTTCCS-SSEEE
T ss_pred             CCCCCHHHHHHHHh--cCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC--ceEEEEEechhhHHHHHHhCCCc-cCEEE
Confidence            34566666655431  235567889999999999999999999998875  59999999999999999999997 99997


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      +  +|+.+..  |..+.+.|.+++.+.
T Consensus       176 i--~g~~~~~--G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          176 V--NGKEFGQ--GRMTLTEIVAKVDTG  198 (521)
T ss_dssp             E--TTEEEEE--SCCCHHHHHHHHCCS
T ss_pred             E--CCEEEec--CCCCHHHHHHHHhhc
Confidence            7  8887644  556889999998654

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=98.69  E-value=3.3e-08  Score=86.50  Aligned_cols=128  Identities=13%  Similarity=0.092  Sum_probs=90.4

Q ss_pred             CCCcccccccchhhhhhcCCCCceEEEEEcCCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCC
Q psy16770        347 NPYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDS  426 (554)
Q Consensus       347 ~~~~~v~~lt~~~~~~~~c~~~~lcvvl~~~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~  426 (554)
                      .+.|++.++|.+++.+.. ......++.|......+......|+++|++  |++ +++|+++|.++.+++++.|    |.
T Consensus         3 c~~plv~~~t~~~f~~~~-~~~~pv~v~f~a~~~~c~~~~p~l~~~A~~--~~g-k~~f~~vd~d~~~~~a~~~----gi   74 (133)
T 2djk_A            3 LGSPLIGEIGPETYSDYM-SAGIPLAYIFAETAEERKELSDKLKPIAEA--QRG-VINFGTIDAKAFGAHAGNL----NL   74 (133)
T ss_dssp             CSCCCSEECCHHHHHHHH-HTTSCEEEEECSCSSSHHHHHHHHHHHHHS--STT-TSEEEEECTTTTGGGTTTT----TC
T ss_pred             cccCceeccChHHHHHHh-cCCCCEEEEEecChhhHHHHHHHHHHHHHH--hCC-eEEEEEEchHHhHHHHHHc----CC
Confidence            457888888877664332 122334555554455667788999999999  875 5999999999888877777    21


Q ss_pred             ccccceEEEEEEecC-CCeeEEEec-CCCCCcccccchhhHHHHHHHHhhhcCCCCCccccccccchhh
Q psy16770        427 SEISLHIAAMWRMDY-KKIKYGWLL-GDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISD  493 (554)
Q Consensus       427 ~~~~~~~~~v~~~~~-~~~ky~~~~-~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~~~~~~~~lp~~~d  493 (554)
                      ..  ..+|.+...+. .+.+|.+.. |         ..+++.|.+||++++.|+..|..+++++|+-||
T Consensus        75 ~~--~~iPtl~i~~~~~g~~~~~~~~g---------~~~~~~l~~fi~~~l~Gkl~p~~kSe~iP~~~~  132 (133)
T 2djk_A           75 KT--DKFPAFAIQEVAKNQKFPFDQEK---------EITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQE  132 (133)
T ss_dssp             CS--SSSSEEEEECTTTCCBCCCCSSS---------CCCHHHHHHHHHHHHHTCCCCSSCCCCCCTTSC
T ss_pred             Cc--ccCCEEEEEecCcCcccCCCCcc---------ccCHHHHHHHHHHHHcCCcCccccCCCCCCcCC
Confidence            11  13554444442 456674322 4         368899999999999999999999999999765

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.69  E-value=9.6e-09  Score=77.28  Aligned_cols=53  Identities=11%  Similarity=0.087  Sum_probs=46.9

Q ss_pred             CcccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChH
Q psy16770         20 DPYETLGVPRT---ASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE   75 (554)
Q Consensus        20 d~y~~Lgv~~~---a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~   75 (554)
                      ..|.||||+++   ++.++|+++||+|...+|||+.   +......+|++|+++|....
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG---GS~yl~~ki~~Ake~l~~~~   60 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG---GSFYLQSKVYRAAERLKWEL   60 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT---CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHHHHH
Confidence            46889999999   9999999999999999999997   44578899999999997653

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.68  E-value=2e-08  Score=80.20  Aligned_cols=74  Identities=20%  Similarity=0.394  Sum_probs=60.5

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH----HHHHHhC--CcCCCCcceeccCCeEEEEeCCccc
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ----GLARRLG--VGSQLPQIALLTDGRTSFFKEPSFS  224 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~----~l~~~~~--v~~~~Pti~~~~~g~~~~y~~g~~~  224 (554)
                      ++.|+++||++|+++.+.+++++.+..  ++.+..+|.+.++    ++++++|  +.+ +|++  |.+|+.+   +|.  
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~vdi~~~~~~~~~l~~~~~~~~~~-vP~i--~~~g~~i---~~~--   72 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERD--DFQYQYVDIRAEGITKEDLQQKAGKPVET-VPQI--FVDQQHI---GGY--   72 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS--SCEEEEECHHHHTCCSHHHHHHTCCCSCC-SCEE--EETTEEE---ESS--
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCC--CceEEEEecccChHHHHHHHHHhCCCCce-eCeE--EECCEEE---ECH--
Confidence            677999999999999999999998865  4899999988764    8999999  997 9998  4578654   342  


Q ss_pred             HHHHHHHHHHh
Q psy16770        225 VQKMVEFFRLK  235 (554)
Q Consensus       225 ~~~i~~fl~~~  235 (554)
                       ++|.+++.+.
T Consensus        73 -~~l~~~~~~~   82 (85)
T 1ego_A           73 -TDFAAWVKEN   82 (85)
T ss_dssp             -HHHHHHHHHH
T ss_pred             -HHHHHHHHHh
Confidence             6888887764

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.68  E-value=9.6e-08  Score=88.64  Aligned_cols=92  Identities=17%  Similarity=0.143  Sum_probs=70.7

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC--------cHHHHH----H----------------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--------EQGLAR----R----------------  197 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~--------~~~l~~----~----------------  197 (554)
                      .++++||.||++||++|+...|.++++.+++++.++.+..|+++.        ...+.+    +                
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  124 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence            357999999999999999999999999999987679999998762        122221    1                


Q ss_pred             ----------------hCCcCCCC---cceec-cCCeEEEEeCCcccHHHHHHHHHHhCCC
Q psy16770        198 ----------------LGVGSQLP---QIALL-TDGRTSFFKEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       198 ----------------~~v~~~~P---ti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~~~  238 (554)
                                      +++.+ +|   +++++ ++|+++..+.|..+.+.|.+.|++.+..
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~-iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~~  184 (187)
T 3dwv_A          125 NAHPLYEYMKKTKPGILATKA-IKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLGS  184 (187)
T ss_dssp             -CCHHHHHHHHHSCCSBSSSS-CCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC--
T ss_pred             chhHHHHHHHhhcCCccCCCc-cccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHhc
Confidence                            13343 66   77676 8999888777777889999999888754

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.66  E-value=2.5e-08  Score=89.93  Aligned_cols=89  Identities=17%  Similarity=0.181  Sum_probs=73.1

Q ss_pred             CCcEEEEEEcccccc-cccchHHHHHHHHHhCC----CCEEEEEEEecCc----------------------------HH
Q psy16770        147 TTPHLILFYSDWCFA-CLQVEPIFKKLMDELSP----LGVGFFTVHVHNE----------------------------QG  193 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~-C~~l~p~~~~~a~~l~~----~~v~~~~Vd~~~~----------------------------~~  193 (554)
                      +++++|.||++||++ |....|.++++.++++.    .++.+..|+++.+                            ..
T Consensus        23 gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  102 (164)
T 2ggt_A           23 GQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQ  102 (164)
T ss_dssp             TCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHHH
T ss_pred             CCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence            579999999999998 99999999999998864    3689999988752                            24


Q ss_pred             HHHHhCCcCCCC---------------cceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        194 LARRLGVGSQLP---------------QIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       194 l~~~~~v~~~~P---------------ti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +++.|||.+ .|               +++++ ++|+.+..+.|..+.++|.+.+++.+
T Consensus       103 ~~~~~~v~~-~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  160 (164)
T 2ggt_A          103 VARAYRVYY-SPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHM  160 (164)
T ss_dssp             HHHTTTCCE-EEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred             HHHhcCeEE-EecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            888999997 99               55555 88998877777778889988887764

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.64  E-value=3.6e-08  Score=92.41  Aligned_cols=90  Identities=16%  Similarity=0.275  Sum_probs=74.3

Q ss_pred             CCCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHH
Q psy16770        146 YTTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLAR  196 (554)
Q Consensus       146 ~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~  196 (554)
                      .+++++|.|| ++||++|+...|.+.++++++++.++.+..|+++.                            +..+++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence            3568999999 99999999999999999999876679999998864                            457899


Q ss_pred             HhCCc-----CCCCcceec-cCCeEEEEeCCc----ccHHHHHHHHHHhC
Q psy16770        197 RLGVG-----SQLPQIALL-TDGRTSFFKEPS----FSVQKMVEFFRLKL  236 (554)
Q Consensus       197 ~~~v~-----~~~Pti~~~-~~g~~~~y~~g~----~~~~~i~~fl~~~~  236 (554)
                      .|++.     + +|+++++ ++|++.....|.    .+.++|.+.+.+..
T Consensus       112 ~~~v~~~~g~~-~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          112 DYDVLFEEAIA-LRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HTTCEETTTEE-CEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HhCCcccCCcc-cceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99998     8 9999888 789886655332    26788888887653

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.64  E-value=5e-08  Score=91.17  Aligned_cols=90  Identities=17%  Similarity=0.313  Sum_probs=75.0

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------------------------cHHHHHHhCC
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------------------------EQGLARRLGV  200 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------------------------~~~l~~~~~v  200 (554)
                      +++++|.|| ++||++|+...|.+.+++++++..++.+..|+++.                         +..+++.|++
T Consensus        45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  124 (195)
T 2bmx_A           45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV  124 (195)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC
T ss_pred             CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCC
Confidence            568999999 99999999999999999999987679999998864                         4578999999


Q ss_pred             c-----CCCCcceec-cCCeEEEEeCCc----ccHHHHHHHHHHhCC
Q psy16770        201 G-----SQLPQIALL-TDGRTSFFKEPS----FSVQKMVEFFRLKLP  237 (554)
Q Consensus       201 ~-----~~~Pti~~~-~~g~~~~y~~g~----~~~~~i~~fl~~~~~  237 (554)
                      .     + +|+++++ ++|+++....|.    .+.++|.+.+++...
T Consensus       125 ~~~~g~~-~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          125 LNADGVA-DRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             BCTTSSB-CEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred             cccCCCc-cceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            9     8 9999888 789886655332    267889888887654

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.63  E-value=6.5e-08  Score=87.62  Aligned_cols=90  Identities=13%  Similarity=0.067  Sum_probs=67.8

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC--------c---HHH-HHHh---------------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--------E---QGL-ARRL---------------  198 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~--------~---~~l-~~~~---------------  198 (554)
                      .+++++|.||++||++|+...|.++++.+++++.++.+..|+++.        .   ... .+++               
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  109 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGS  109 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCc
Confidence            357999999999999999999999999999987679999999863        1   223 2333               


Q ss_pred             --------------C-----CcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        199 --------------G-----VGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       199 --------------~-----v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                                    |     |+. +|+++++ ++|+++..+.|..+.+.|.+.+++.+
T Consensus       110 ~~~~~~~~l~~~~~~~~~~~i~~-~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  166 (169)
T 2v1m_A          110 DADDLYKFLKSRQHGTLTNNIKW-NFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL  166 (169)
T ss_dssp             TSCHHHHHHHHHSCCSSSCSCCS-TTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCccCCcccc-cceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHh
Confidence                          3     332 4776666 78988777766667777887777654

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.63  E-value=3.5e-08  Score=91.52  Aligned_cols=89  Identities=19%  Similarity=0.315  Sum_probs=73.4

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------------------------cHHHHHHhCC
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------------------------EQGLARRLGV  200 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------------------------~~~l~~~~~v  200 (554)
                      +++++|.|| ++||++|....|.+.+++++++..++.+..|+++.                         +..+++.|++
T Consensus        31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  110 (187)
T 1we0_A           31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDV  110 (187)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred             CCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhCC
Confidence            478999999 99999999999999999999986579999998874                         4578999999


Q ss_pred             c------CCCCcceec-cCCeEEEEeCCc----ccHHHHHHHHHHhC
Q psy16770        201 G------SQLPQIALL-TDGRTSFFKEPS----FSVQKMVEFFRLKL  236 (554)
Q Consensus       201 ~------~~~Pti~~~-~~g~~~~y~~g~----~~~~~i~~fl~~~~  236 (554)
                      .      + +|+++++ ++|++.....|.    ++.++|.+.+++..
T Consensus       111 ~~~~~g~~-~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  156 (187)
T 1we0_A          111 LNEETGLA-DRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQ  156 (187)
T ss_dssp             EETTTTEE-CEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred             CcCCCCce-eeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            8      8 9999999 789886654332    25678888877654

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.63  E-value=6e-08  Score=87.22  Aligned_cols=86  Identities=10%  Similarity=0.147  Sum_probs=68.3

Q ss_pred             CcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------------------cHHHHHHhCCc--
Q psy16770        148 TPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------------------EQGLARRLGVG--  201 (554)
Q Consensus       148 ~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------------------~~~l~~~~~v~--  201 (554)
                      ++++|.|| ++||++|+...|.+.++++++++.++.+..|+++.                       +..+++.||+.  
T Consensus        37 ~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~  116 (160)
T 1xvw_A           37 KNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNE  116 (160)
T ss_dssp             CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEET
T ss_pred             CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCccc
Confidence            48999998 99999999999999999999987679999998864                       67799999998  


Q ss_pred             --CCCC--cceec-cCCeEEEEeCCcc----cHHHHHHHHHH
Q psy16770        202 --SQLP--QIALL-TDGRTSFFKEPSF----SVQKMVEFFRL  234 (554)
Q Consensus       202 --~~~P--ti~~~-~~g~~~~y~~g~~----~~~~i~~fl~~  234 (554)
                        + +|  +++++ ++|+++....|..    ..+++++.+.+
T Consensus       117 ~~~-~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A          117 QAG-IANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             TTT-EECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             cCC-CeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence              8 99  55555 8898866554432    34566666554

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.61  E-value=5.9e-08  Score=89.56  Aligned_cols=90  Identities=17%  Similarity=0.180  Sum_probs=69.3

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------c----HHHHHH-hC--------------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------E----QGLARR-LG--------------  199 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------~----~~l~~~-~~--------------  199 (554)
                      .+++++|.||++||++|+...|.++++++++++.++.+..|+++.       .    .+.+++ ++              
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~  127 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGT  127 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCc
Confidence            357999999999999999999999999999987679999999863       1    233444 32              


Q ss_pred             ---------CcCCCC-------cceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        200 ---------VGSQLP-------QIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       200 ---------v~~~~P-------ti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                               +.+ +|       +.+++ ++|+++..+.|..+.++|.+.+++.+
T Consensus       128 ~~~~~~~~~~~~-~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          128 GAHPAFKYLAQT-SGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             TSCHHHHHHHHH-HSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred             cchhhhhhhhhc-CCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence                     444 67       54444 88998877767668888988887654

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.56  E-value=1.2e-07  Score=87.53  Aligned_cols=89  Identities=9%  Similarity=-0.024  Sum_probs=66.8

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------c----HHHHHHh----------------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------E----QGLARRL----------------  198 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------~----~~l~~~~----------------  198 (554)
                      .+++++|.||++||+.|+...|.++++++++++.++.+..|+++.       .    ...++++                
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  125 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  125 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTT
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcc
Confidence            357999999999999999999999999999987679999998762       1    1222222                


Q ss_pred             ---------------C-----CcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        199 ---------------G-----VGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       199 ---------------~-----v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                                     +     |+. .|+++++ ++|+++..+.|..+.++|.+.+++.
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~i~~-~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  182 (183)
T 2obi_A          126 AHPLWKWMKIQPKGKGILGNAIKW-NFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  182 (183)
T ss_dssp             SCHHHHHHHTSTTTCCSSSSSCCS-TTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred             hhHHHHHhhccCCCCCcccccccc-cceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence                           3     232 4887777 8899877776666777877766554

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.52  E-value=2e-07  Score=85.78  Aligned_cols=90  Identities=16%  Similarity=0.173  Sum_probs=66.8

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------cHHHHHH-hCCcC-----------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------EQGLARR-LGVGS-----------  202 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------~~~l~~~-~~v~~-----------  202 (554)
                      .++++||.||++||++|+...|.++++++++++.++.+..|+++.           ....+++ +++..           
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS  116 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence            356999999999999999999999999999998789999998753           2355666 66531           


Q ss_pred             --------------CCCc-----ceeccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        203 --------------QLPQ-----IALLTDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       203 --------------~~Pt-----i~~~~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                                    ..|+     +++-++|+++..+.|..+.+.+.+.+.+.
T Consensus       117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  168 (180)
T 3kij_A          117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAAL  168 (180)
T ss_dssp             TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHH
T ss_pred             cccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Confidence                          0454     34448898887776665666666666544

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.50  E-value=1.9e-07  Score=86.48  Aligned_cols=90  Identities=8%  Similarity=-0.103  Sum_probs=66.2

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------cHHHHHHhCCc-------------
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------EQGLARRLGVG-------------  201 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------~~~l~~~~~v~-------------  201 (554)
                      .+++++|.||++||+.|+...|.++++.+++++.++.+..|+++.           -.+.++++++.             
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  127 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDD  127 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTT
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChh
Confidence            357999999999999999999999999999987679999998863           13345555432             


Q ss_pred             ------------------C----CCCcceec-cCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        202 ------------------S----QLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       202 ------------------~----~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                                        +    ..|+.+++ ++|+++..+.|..+.++|.+.+++.
T Consensus       128 ~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  184 (185)
T 2gs3_A          128 AHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  184 (185)
T ss_dssp             BCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHH
T ss_pred             hhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHh
Confidence                              0    03666666 7888877666655666776666554

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.48  E-value=2.1e-07  Score=88.10  Aligned_cols=44  Identities=14%  Similarity=0.055  Sum_probs=40.2

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH  189 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~  189 (554)
                      .++++||.|||+||+.|+...|.++++++++++.++.+..|+++
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            35699999999999999999999999999998767999999986

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.47  E-value=1.7e-07  Score=89.15  Aligned_cols=84  Identities=17%  Similarity=0.254  Sum_probs=62.2

Q ss_pred             CCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEE-----------------------------------
Q psy16770        143 PKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVH-----------------------------------  187 (554)
Q Consensus       143 ~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd-----------------------------------  187 (554)
                      .....+++++.|+++||++|+++.|.++++++.    ++.+..++                                   
T Consensus        82 g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~----~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~  157 (216)
T 1eej_A           82 KAPQEKHVITVFTDITCGYCHKLHEQMADYNAL----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKS  157 (216)
T ss_dssp             CCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCC
T ss_pred             cCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhC----CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCC
Confidence            334567899999999999999999999988762    35544332                                   


Q ss_pred             -----e----cCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        188 -----V----HNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       188 -----~----~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                           |    +.+..+++++||++ +||+ ++.+|..  .. |..+.+.|.+++.+.
T Consensus       158 ~~~~~~~~~v~~~~~l~~~~gV~g-tPt~-v~~dG~~--~~-G~~~~~~l~~~l~~~  209 (216)
T 1eej_A          158 VAPASCDVDIADHYALGVQLGVSG-TPAV-VLSNGTL--VP-GYQPPKEMKEFLDEH  209 (216)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHTCCS-SSEE-ECTTSCE--EE-SCCCHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHcCCCc-cCEE-EEcCCeE--ec-CCCCHHHHHHHHHHh
Confidence                 2    23567899999998 9999 5667753  23 445778898888754

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.44  E-value=3.8e-07  Score=83.42  Aligned_cols=85  Identities=13%  Similarity=0.183  Sum_probs=65.7

Q ss_pred             CCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe-----------------------------------
Q psy16770        144 KSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV-----------------------------------  188 (554)
Q Consensus       144 ~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~-----------------------------------  188 (554)
                      ....++.+++|+++||++|+++.|.++++.++...  +++..++.                                   
T Consensus        19 ~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~   96 (175)
T 3gyk_A           19 NPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN--VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSG   96 (175)
T ss_dssp             CTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSS
T ss_pred             CCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC--EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCC
Confidence            34567899999999999999999999999888653  66666552                                   


Q ss_pred             ----------------------------------cCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHH
Q psy16770        189 ----------------------------------HNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRL  234 (554)
Q Consensus       189 ----------------------------------~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~  234 (554)
                                                        ..+..+++++||.| +||+++  +|+   ...|..+.+.+.+.+.+
T Consensus        97 ~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~g-tPt~~i--~g~---~~~G~~~~~~l~~~i~~  170 (175)
T 3gyk_A           97 KANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNG-TPSFVV--EDA---LVPGFVEQSQLQDAVDR  170 (175)
T ss_dssp             CCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCS-SSEEEE--TTE---EECSCCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCcc-CCEEEE--CCE---EeeCCCCHHHHHHHHHH
Confidence                                              23456788999998 999987  675   33355688899888876


Q ss_pred             hC
Q psy16770        235 KL  236 (554)
Q Consensus       235 ~~  236 (554)
                      .+
T Consensus       171 ~l  172 (175)
T 3gyk_A          171 AR  172 (175)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.43  E-value=3.4e-07  Score=85.16  Aligned_cols=88  Identities=20%  Similarity=0.333  Sum_probs=71.6

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      +++++|.|| ++||++|....|.+.++++++++.++.+..|+++.                            +..+++.
T Consensus        31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~  110 (192)
T 2h01_A           31 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARS  110 (192)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHHH
Confidence            568999999 99999999999999999999975579999998763                            3478999


Q ss_pred             hCCc-----CCCCcceec-cCCeEEEEeCC----cccHHHHHHHHHHh
Q psy16770        198 LGVG-----SQLPQIALL-TDGRTSFFKEP----SFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~-----~~~Pti~~~-~~g~~~~y~~g----~~~~~~i~~fl~~~  235 (554)
                      ||+.     . +|+++++ ++|++.....|    .++.+++.+.++..
T Consensus       111 ~gv~~~~g~~-~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l  157 (192)
T 2h01_A          111 YDVLFNESVA-LRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL  157 (192)
T ss_dssp             TTCEETTTEE-CCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             hCCcCcCCce-eeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence            9999     8 9999999 78987655433    23567888777654

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.42  E-value=2.8e-07  Score=86.53  Aligned_cols=89  Identities=13%  Similarity=0.255  Sum_probs=72.3

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      +++++|.|| ++||++|....|.+.+++++++..++.+..|+++.                            +..+++.
T Consensus        36 gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  115 (202)
T 1uul_A           36 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS  115 (202)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHH
Confidence            468999999 99999999999999999999977679999998864                            3578999


Q ss_pred             hCCc------CCCCcceec-cCCeEEEEeCC----cccHHHHHHHHHHhC
Q psy16770        198 LGVG------SQLPQIALL-TDGRTSFFKEP----SFSVQKMVEFFRLKL  236 (554)
Q Consensus       198 ~~v~------~~~Pti~~~-~~g~~~~y~~g----~~~~~~i~~fl~~~~  236 (554)
                      ||+.      + +|+++++ ++|++.....|    .++.++|.+.++...
T Consensus       116 ygv~~~~~g~~-~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          116 YGVLKEEDGVA-YRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HTCEETTTTEE-CEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             cCCccCCCCce-eeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            9999      8 9998888 78887655322    235688888777553

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.39  E-value=4.2e-07  Score=86.69  Aligned_cols=89  Identities=18%  Similarity=0.319  Sum_probs=72.3

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      +++++|.|| ++||+.|....|.+++++++++..++.+..|+++.                            +..+++.
T Consensus        56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~  135 (220)
T 1zye_A           56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD  135 (220)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence            478999999 99999999999999999999976579999998763                            3578999


Q ss_pred             hCCc------CCCCcceec-cCCeEEEEeCC----cccHHHHHHHHHHhC
Q psy16770        198 LGVG------SQLPQIALL-TDGRTSFFKEP----SFSVQKMVEFFRLKL  236 (554)
Q Consensus       198 ~~v~------~~~Pti~~~-~~g~~~~y~~g----~~~~~~i~~fl~~~~  236 (554)
                      ||+.      + +|+++++ ++|++.....+    .++.+++.+.++...
T Consensus       136 ygv~~~~~g~~-~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          136 YGVLLEGPGLA-LRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             TTCEETTTTEE-CEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             hCCeecCCCcc-cceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            9998      8 9999999 78887654322    246688888877654

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.39  E-value=3.6e-07  Score=86.63  Aligned_cols=82  Identities=15%  Similarity=0.235  Sum_probs=61.6

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe------------------------------------
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV------------------------------------  188 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~------------------------------------  188 (554)
                      ...+++++.|+++||++|+++.|.++++.+.    ++.+..+..                                    
T Consensus        84 ~~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~----~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~  159 (211)
T 1t3b_A           84 KNEKHVVTVFMDITCHYCHLLHQQLKEYNDL----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPK  159 (211)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCS
T ss_pred             CCCCEEEEEEECCCCHhHHHHHHHHHHHHhC----CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCC
Confidence            3567899999999999999999999987652    344443221                                    


Q ss_pred             --------cCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        189 --------HNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       189 --------~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                              +.+..+++++||+| +||+++ .+|+   ...|..+.+.|.+++.+.
T Consensus       160 ~~~~~~~v~~~~~l~~~~gV~g-TPt~vi-~nG~---~~~G~~~~~~l~~~l~~~  209 (211)
T 1t3b_A          160 EVKTPNIVKKHYELGIQFGVRG-TPSIVT-STGE---LIGGYLKPADLLRALEET  209 (211)
T ss_dssp             SCCCSSHHHHHHHHHHHHTCCS-SCEEEC-TTSC---CCCSCCCHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHcCCCc-CCEEEE-eCCE---EecCCCCHHHHHHHHHhc
Confidence                    13467889999998 999988 7886   234556889999888653

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.33  E-value=1.7e-06  Score=78.56  Aligned_cols=91  Identities=14%  Similarity=0.100  Sum_probs=67.6

Q ss_pred             CCCcEEEEEEccccc-ccccchHHHHHHHHHhCCCC--EEEEEEEecC----------------------------cHHH
Q psy16770        146 YTTPHLILFYSDWCF-ACLQVEPIFKKLMDELSPLG--VGFFTVHVHN----------------------------EQGL  194 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~-~C~~l~p~~~~~a~~l~~~~--v~~~~Vd~~~----------------------------~~~l  194 (554)
                      .+++++|.||++||+ +|....|.+.++.+.++..+  +.+..|+++.                            +..+
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            357899999999999 99999999999999887544  8999998762                            1223


Q ss_pred             HHHh----------------CCcCCCCcceec-cCCeEEEEeCCcc--cHHHHHHHHHHhCC
Q psy16770        195 ARRL----------------GVGSQLPQIALL-TDGRTSFFKEPSF--SVQKMVEFFRLKLP  237 (554)
Q Consensus       195 ~~~~----------------~v~~~~Pti~~~-~~g~~~~y~~g~~--~~~~i~~fl~~~~~  237 (554)
                      ++.+                ++.+ .|+++++ ++|+++..+.|..  +.++|.+.+++.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIH-QSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCS-CCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHhhcCeeEeecCCCCeeee-eeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence            3333                3455 7876666 8898876655543  46889998887754

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.32  E-value=6.1e-07  Score=85.14  Aligned_cols=90  Identities=19%  Similarity=0.302  Sum_probs=71.1

Q ss_pred             CCCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHH
Q psy16770        146 YTTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLAR  196 (554)
Q Consensus       146 ~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~  196 (554)
                      .+++++|.|| ++||+.|....|.+.+++++++..++.+..|+++.                            +..+++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  130 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK  130 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence            3568999999 99999999999999999999975578998888754                            356899


Q ss_pred             HhCCc-----CCCCcceec-cCCeEEEEe-CC---cccHHHHHHHHHHhC
Q psy16770        197 RLGVG-----SQLPQIALL-TDGRTSFFK-EP---SFSVQKMVEFFRLKL  236 (554)
Q Consensus       197 ~~~v~-----~~~Pti~~~-~~g~~~~y~-~g---~~~~~~i~~fl~~~~  236 (554)
                      +||+.     . +|+++++ ++|++.... +.   .++.+++.+.++...
T Consensus       131 ~ygv~~~~g~~-~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          131 DYNVLFDDSVS-LRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HTTCEETTTEE-CEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCccccCCc-ccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99998     7 9988777 788875543 21   235788888777543

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.32  E-value=1e-06  Score=75.91  Aligned_cols=105  Identities=13%  Similarity=0.115  Sum_probs=75.4

Q ss_pred             HHHhCCCCccc-cC-CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCC
Q psy16770        232 FRLKLPYKLIV-PL-SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKV  309 (554)
Q Consensus       232 l~~~~~~~~v~-~~-t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i  309 (554)
                      ++++.+|+... .+ |.+++++|+..   +..++|++|.+..++....+..++...+++.||.+     .++++++++++
T Consensus        13 m~kq~gP~~~~~~i~s~~e~e~fi~~---~~v~VVGfF~~~~~~~~~~F~~~A~~~~d~~F~~t-----~~~~v~~~~~v   84 (124)
T 2l4c_A           13 SSDGPGAAQEPTWLTDVPAAMEFIAA---TEVAVIGFFQDLEIPAVPILHSMVQKFPGVSFGIS-----TDSEVLTHYNI   84 (124)
T ss_dssp             SCCCSCCSCCCEECCSHHHHHHHHHT---SSEEEEEECSCTTSTHHHHHHHHHHHCTTSEEEEE-----CCHHHHHHTTC
T ss_pred             HHhccCCCCcceEcCCHHHHHHHHhc---CCCEEEEEECCCCChhHHHHHHHHHhCCCceEEEE-----ChHHHHHHcCC
Confidence            34566666332 24 56889999953   34455556666566667777766633389999999     68999999999


Q ss_pred             CCCCceEEEEeCCCCCCCceeecC----CCChhHHHhHHhcCC
Q psy16770        310 PGDKDSLLIFKEDKDRPSASITMN----SIPVPTLQDITDNNP  348 (554)
Q Consensus       310 ~~~~Ptlvvfk~~~~~~~~~i~~~----~~~~~~l~~fi~~~~  348 (554)
                      +  .|++++|++..+...  .+.+    +++...|.+||+.|.
T Consensus        85 ~--~~~vvlfkkfde~~~--~~~g~~~~~~~~~~L~~FI~~n~  123 (124)
T 2l4c_A           85 T--GNTICLFRLVDNEQL--NLEDEDIESIDATKLSRFIEINS  123 (124)
T ss_dssp             C--SSCEEEEETTTTEEE--EECHHHHTTCCHHHHHHHHHHHC
T ss_pred             C--CCeEEEEEcCCCCce--eecCcccCCCCHHHHHHHHHHhc
Confidence            8  689999998665542  3443    789999999999775

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=98.32  E-value=3.5e-06  Score=81.27  Aligned_cols=148  Identities=11%  Similarity=0.157  Sum_probs=90.3

Q ss_pred             CCcEEEEEE-cccccccc-cchHHHHHHHHHhCCCCE-EEEEEEecC----------------------cHHHHHHhCCc
Q psy16770        147 TTPHLILFY-SDWCFACL-QVEPIFKKLMDELSPLGV-GFFTVHVHN----------------------EQGLARRLGVG  201 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~-~l~p~~~~~a~~l~~~~v-~~~~Vd~~~----------------------~~~l~~~~~v~  201 (554)
                      +++++|.|| +.||++|. ...|.+.+++++++..|+ .+..|+.+.                      +..+++.||+.
T Consensus        33 gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~  112 (241)
T 1nm3_A           33 NKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGML  112 (241)
T ss_dssp             TSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTCE
T ss_pred             CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCce
Confidence            468899999 99999999 999999999999876678 888887754                      23567777765


Q ss_pred             ------C----CCCcceeccCCeEEEEeCCc---------ccHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCce
Q psy16770        202 ------S----QLPQIALLTDGRTSFFKEPS---------FSVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKV  262 (554)
Q Consensus       202 ------~----~~Pti~~~~~g~~~~y~~g~---------~~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~  262 (554)
                            |    ..|+..++++|++....-+.         .+.+++.+.+....                      ....
T Consensus       113 ~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~~~----------------------i~~~  170 (241)
T 1nm3_A          113 VGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYLAPQH----------------------QVQE  170 (241)
T ss_dssp             EECTTTTCCEEECCEEEEEETTEEEEEEECCSCSSCCCSSSSHHHHHHHHCTTS----------------------CCCC
T ss_pred             eecccccCcccceeEEEEEECCEEEEEEEeccCCCccceecCHHHHHHHhhhhc----------------------cccc
Confidence                  1    03655444888765443222         24455544443211                      0122


Q ss_pred             EEEEEecCCchhHHHHHHhhccCCceEEEEEEccCCCC-hhHHhHhCCCCCCceEEE
Q psy16770        263 HALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDS-SSVFQRFKVPGDKDSLLI  318 (554)
Q Consensus       263 ~v~~f~~~~~~~~~~~~~a~~~~~~v~Fg~v~~~~~~~-~~l~~k~~i~~~~Ptlvv  318 (554)
                      .+.+|....-+........+. ...+.|-.++.+.... +++.+.++... .|.|++
T Consensus       171 ~i~ly~~~~Cp~C~~a~~~L~-~~~i~~~~~~i~~~~~~~~l~~~~g~~~-vP~~~~  225 (241)
T 1nm3_A          171 SISIFTKPGCPFCAKAKQLLH-DKGLSFEEIILGHDATIVSVRAVSGRTT-VPQVFI  225 (241)
T ss_dssp             CEEEEECSSCHHHHHHHHHHH-HHTCCCEEEETTTTCCHHHHHHHTCCSS-SCEEEE
T ss_pred             eEEEEECCCChHHHHHHHHHH-HcCCceEEEECCCchHHHHHHHHhCCCC-cCEEEE
Confidence            345555444444443333332 1245666777764322 45777788765 898764

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.31  E-value=1.2e-06  Score=82.25  Aligned_cols=89  Identities=13%  Similarity=0.126  Sum_probs=63.8

Q ss_pred             CCcEEEEEEcccccc-cccchHHHHHHHHHhC---CCCEEEEEEEecC----------------------------cHHH
Q psy16770        147 TTPHLILFYSDWCFA-CLQVEPIFKKLMDELS---PLGVGFFTVHVHN----------------------------EQGL  194 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~-C~~l~p~~~~~a~~l~---~~~v~~~~Vd~~~----------------------------~~~l  194 (554)
                      ++++||.||++||++ |....|.+.++.+.+.   +.++.+..|+++.                            ...+
T Consensus        41 Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~  120 (200)
T 2b7k_A           41 GKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNA  120 (200)
T ss_dssp             TSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHHH
T ss_pred             CCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHHH
Confidence            569999999999998 9999999999887775   2368888888763                            1357


Q ss_pred             HHHhCCc-CCCC---------------cceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        195 ARRLGVG-SQLP---------------QIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       195 ~~~~~v~-~~~P---------------ti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++.|||. + .|               +++++ ++|+++....|..+.+.+.+.+.+.+
T Consensus       121 ~~~~gv~~~-~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l  178 (200)
T 2b7k_A          121 CKKYRVYFS-TPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHV  178 (200)
T ss_dssp             HHHTTC---------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHH
T ss_pred             HHHcCcEEe-eccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence            8899987 3 44               44444 89998877766556566666655543

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.29  E-value=1.2e-06  Score=83.64  Aligned_cols=88  Identities=15%  Similarity=0.295  Sum_probs=69.7

Q ss_pred             CCCcEEEEEEc-ccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHH
Q psy16770        146 YTTPHLILFYS-DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLAR  196 (554)
Q Consensus       146 ~~~~~lV~Fya-~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~  196 (554)
                      .++++||.||+ .||++|....|.++++++++++.++.+..|+++.                            +..+++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            35689999996 9999999999999999999987679999998874                            236888


Q ss_pred             HhCCc------CCCCcceec-cCCeEEEEeCCc----ccHHHHHHHHHH
Q psy16770        197 RLGVG------SQLPQIALL-TDGRTSFFKEPS----FSVQKMVEFFRL  234 (554)
Q Consensus       197 ~~~v~------~~~Pti~~~-~~g~~~~y~~g~----~~~~~i~~fl~~  234 (554)
                      .|++.      . +|+.+++ ++|+++....+.    ...+++++.++.
T Consensus       148 ~ygv~~~~~g~~-~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~  195 (222)
T 3ztl_A          148 AYGVFDEEDGNA-FRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA  195 (222)
T ss_dssp             HTTCBCTTTSSB-CEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HcCCeecCCCCc-cceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            99998      7 8998888 788876554221    245677776654

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.28  E-value=1.9e-06  Score=78.00  Aligned_cols=86  Identities=14%  Similarity=0.164  Sum_probs=66.7

Q ss_pred             CCcEEEEEEccc-ccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------------------cHHHHHHhCCcC
Q psy16770        147 TTPHLILFYSDW-CFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------------------EQGLARRLGVGS  202 (554)
Q Consensus       147 ~~~~lV~Fya~w-C~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------------------~~~l~~~~~v~~  202 (554)
                      +++++|.||++| |++|+...|.++++++++ . ++.+..|+.+.                       +..+++.|++..
T Consensus        44 gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~-~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~  121 (167)
T 2jsy_A           44 GKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-G-DVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYI  121 (167)
T ss_dssp             TSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-S-SCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBB
T ss_pred             CCeEEEEEecCCCCCchHHHHHHHHHHHHHc-C-CCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCcc
Confidence            568999999999 999999999999999999 3 68888888763                       357889999974


Q ss_pred             CC------Ccceec-cCCeEEEEeCC-----cccHHHHHHHHHHh
Q psy16770        203 QL------PQIALL-TDGRTSFFKEP-----SFSVQKMVEFFRLK  235 (554)
Q Consensus       203 ~~------Pti~~~-~~g~~~~y~~g-----~~~~~~i~~fl~~~  235 (554)
                       .      |+.+++ ++|++.....|     ..+.+++.+.+++.
T Consensus       122 -~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l  165 (167)
T 2jsy_A          122 -KELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL  165 (167)
T ss_dssp             -TTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred             -ccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence             3      887777 78987665422     22447777777654

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.26  E-value=1.1e-06  Score=67.93  Aligned_cols=68  Identities=16%  Similarity=0.353  Sum_probs=53.4

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHH---HhCCcCCCCcceeccCCeEEEEeCCcccHHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLAR---RLGVGSQLPQIALLTDGRTSFFKEPSFSVQK  227 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~---~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~  227 (554)
                      ++.|+++||++|+++.+.+++.       ++.+..+|.+.++.+.+   ++|+.+ +|++..  +|+.   .+|. +.+.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-------~i~~~~~di~~~~~~~~~~~~~~~~~-vP~l~~--~g~~---~~g~-~~~~   68 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA-------GLAYNTVDISLDDEARDYVMALGYVQ-APVVEV--DGEH---WSGF-RPER   68 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETTTCHHHHHHHHHTTCBC-CCEEEE--TTEE---EESC-CHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-------CCCcEEEECCCCHHHHHHHHHcCCCc-cCEEEE--CCeE---EcCC-CHHH
Confidence            5679999999999998887753       47788899998877666   899997 999874  7764   3454 5678


Q ss_pred             HHHHH
Q psy16770        228 MVEFF  232 (554)
Q Consensus       228 i~~fl  232 (554)
                      |.+++
T Consensus        69 l~~~l   73 (75)
T 1r7h_A           69 IKQLQ   73 (75)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87776

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.23  E-value=4.4e-07  Score=71.62  Aligned_cols=69  Identities=13%  Similarity=0.264  Sum_probs=51.6

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHH---HhCCcCCCCcceeccCCeEEEEeCCcccHHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLAR---RLGVGSQLPQIALLTDGRTSFFKEPSFSVQK  227 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~---~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~  227 (554)
                      ++.|+++||++|+++.+.+++.       ++.+..+|++.++.+.+   ++|+.+ +|++  +.+|+.   .+|. +.+.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~~~~~~~~~~~g~~~-vP~~--~~~g~~---~~g~-~~~~   68 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR-------GFDFEMINVDRVPEAAEALRAQGFRQ-LPVV--IAGDLS---WSGF-RPDM   68 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETTTCHHHHHHHHHTTCCS-SCEE--EETTEE---EESC-CHHH
T ss_pred             EEEEcCCCChhHHHHHHHHHHC-------CCCeEEEECCCCHHHHHHHHHhCCCc-cCEE--EECCEE---EecC-CHHH
Confidence            5779999999999999888752       47788999998876654   589997 9998  347764   2453 5566


Q ss_pred             HHHHHH
Q psy16770        228 MVEFFR  233 (554)
Q Consensus       228 i~~fl~  233 (554)
                      |.+++.
T Consensus        69 l~~~l~   74 (81)
T 1h75_A           69 INRLHP   74 (81)
T ss_dssp             HGGGSC
T ss_pred             HHHHHh
Confidence            666554

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.22  E-value=4.7e-06  Score=76.20  Aligned_cols=87  Identities=13%  Similarity=0.176  Sum_probs=64.4

Q ss_pred             CCcEEEEEEccc-ccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------cHHHHHHhCCcCC
Q psy16770        147 TTPHLILFYSDW-CFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------EQGLARRLGVGSQ  203 (554)
Q Consensus       147 ~~~~lV~Fya~w-C~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------~~~l~~~~~v~~~  203 (554)
                      +++++|.||+.| |+.|....|.+.++.++ .  ++.+..|+.+.                      +..+++.|++.. 
T Consensus        44 gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~--~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-  119 (175)
T 1xvq_A           44 GKSVLLNIFPSVDTPVCATSVRTFDERAAA-S--GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTI-  119 (175)
T ss_dssp             TSCEEEEECSCCCSSCCCHHHHHHHHHHHH-T--TCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBB-
T ss_pred             CCEEEEEEEeCCCCchHHHHHHHHHHHHhh-c--CCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCcc-
Confidence            568999999999 99999999999999988 3  58888888762                      356899999986 


Q ss_pred             C---------Ccceec-cCCeEEEEeC--C---cccHHHHHHHHHHhCC
Q psy16770        204 L---------PQIALL-TDGRTSFFKE--P---SFSVQKMVEFFRLKLP  237 (554)
Q Consensus       204 ~---------Pti~~~-~~g~~~~y~~--g---~~~~~~i~~fl~~~~~  237 (554)
                      .         |+.+++ ++|++.....  +   ....+++++.+.+-.+
T Consensus       120 ~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~~~~~  168 (175)
T 1xvq_A          120 ADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGATSG  168 (175)
T ss_dssp             CSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHHTC-
T ss_pred             cccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHHhhcC
Confidence            7         776666 7898765542  2   2244556665554443

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.17  E-value=5.5e-06  Score=74.30  Aligned_cols=72  Identities=15%  Similarity=0.257  Sum_probs=58.5

Q ss_pred             CcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------cHHHHHHhCCcCCCC
Q psy16770        148 TPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------EQGLARRLGVGSQLP  205 (554)
Q Consensus       148 ~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------~~~l~~~~~v~~~~P  205 (554)
                      ++++|.|| +.||+.|....|.+.++.++++..+ .+..|.++.                     +..+++.||+.. .|
T Consensus        36 ~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-~p  113 (159)
T 2a4v_A           36 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKK-TP  113 (159)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBS-SS
T ss_pred             CeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc-cc
Confidence            36788887 9999999999999999999998767 777777643                     446889999997 98


Q ss_pred             -------cceeccCCeEEEEeCCc
Q psy16770        206 -------QIALLTDGRTSFFKEPS  222 (554)
Q Consensus       206 -------ti~~~~~g~~~~y~~g~  222 (554)
                             ++++ ++|++.....|.
T Consensus       114 ~~g~~~~~~li-~~G~i~~~~~g~  136 (159)
T 2a4v_A          114 LSGSIRSHFIF-VDGKLKFKRVKI  136 (159)
T ss_dssp             SSCBCCEEEEE-ETTEEEEEEESC
T ss_pred             cCCccceEEEE-cCCEEEEEEccC
Confidence                   6677 999987665443

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.17  E-value=4e-06  Score=75.40  Aligned_cols=88  Identities=17%  Similarity=0.179  Sum_probs=67.1

Q ss_pred             CCcEEEEEEc-ccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------cHHHHHHhCCcCC-
Q psy16770        147 TTPHLILFYS-DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------EQGLARRLGVGSQ-  203 (554)
Q Consensus       147 ~~~~lV~Fya-~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------~~~l~~~~~v~~~-  203 (554)
                      +++++|.||+ .||++|....|.+.++.+++++.++.+..|.++.                     +..+++.||+. . 
T Consensus        35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-~~  113 (163)
T 3gkn_A           35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVI-KE  113 (163)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCE-EE
T ss_pred             CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCc-cc
Confidence            4589999998 9999999999999999999986678888888863                     33677788876 3 


Q ss_pred             -----------CCcceec-cCCeEEEEeCCc---ccHHHHHHHHHHh
Q psy16770        204 -----------LPQIALL-TDGRTSFFKEPS---FSVQKMVEFFRLK  235 (554)
Q Consensus       204 -----------~Pti~~~-~~g~~~~y~~g~---~~~~~i~~fl~~~  235 (554)
                                 .|+.+++ ++|++...+.+.   ...+++.+.+++.
T Consensus       114 ~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l  160 (163)
T 3gkn_A          114 KNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH  160 (163)
T ss_dssp             EEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             cccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence                       7888888 788876544432   2346666666554

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.16  E-value=8.1e-06  Score=77.41  Aligned_cols=43  Identities=19%  Similarity=0.282  Sum_probs=38.8

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH  189 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~  189 (554)
                      .++++||.|||+||+.|+ ..|.++++.+++++.|+.+..|.|+
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEcc
Confidence            357999999999999998 8999999999998778999999875

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.11  E-value=4.3e-06  Score=77.63  Aligned_cols=42  Identities=17%  Similarity=0.293  Sum_probs=36.0

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV  188 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~  188 (554)
                      ..++.+++|+++||++|+++.|.+.++.+.+.. ++.+..+..
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEEC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC-CeEEEEEeh
Confidence            467899999999999999999999999998876 577775554

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.08  E-value=7.6e-06  Score=76.10  Aligned_cols=43  Identities=16%  Similarity=0.308  Sum_probs=38.3

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH  189 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~  189 (554)
                      ..++++|.|+++||++|+++.|.++++.+.+.+ ++.+..++..
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence            467899999999999999999999999998876 5888888874

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.07  E-value=3e-06  Score=76.09  Aligned_cols=88  Identities=9%  Similarity=0.238  Sum_probs=56.6

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------cHHHHHHhCCcC--
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------EQGLARRLGVGS--  202 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------~~~l~~~~~v~~--  202 (554)
                      +++++|.|| +.||+.|....|.+.++.++++..++.+..|+.+.                     +.+++++|||..  
T Consensus        30 Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~~  109 (157)
T 4g2e_A           30 GKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWEF  109 (157)
T ss_dssp             TSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEEC
T ss_pred             CCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCcccc
Confidence            568899998 99999999999999999988887788888887764                     235666777631  


Q ss_pred             --------CCCcceec-cCCeEEEEe-----CCcccHHHHHHHHHH
Q psy16770        203 --------QLPQIALL-TDGRTSFFK-----EPSFSVQKMVEFFRL  234 (554)
Q Consensus       203 --------~~Pti~~~-~~g~~~~y~-----~g~~~~~~i~~fl~~  234 (554)
                              ..|++.++ ++|++....     .+..+.++|.+.++.
T Consensus       110 ~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~  155 (157)
T 4g2e_A          110 PALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS  155 (157)
T ss_dssp             TTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHH
T ss_pred             ccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence                    13555555 678764322     233466778777654

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.06  E-value=1e-05  Score=76.32  Aligned_cols=43  Identities=14%  Similarity=0.112  Sum_probs=38.2

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH  189 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~  189 (554)
                      .++++||.|||+||+.| ...|.++++.+++++.|+.+..|.|+
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECc
Confidence            35699999999999999 68899999999998778999999875

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.02  E-value=8.6e-06  Score=78.71  Aligned_cols=87  Identities=17%  Similarity=0.181  Sum_probs=63.2

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe------------------------------------
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV------------------------------------  188 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~------------------------------------  188 (554)
                      ...++.++.|+.+||++|+++.|.++++.+.  + ++.+..++.                                    
T Consensus        95 ~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g-~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l  171 (241)
T 1v58_A           95 KDAPVIVYVFADPFCPYCKQFWQQARPWVDS--G-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKL  171 (241)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHHHHHHHT--T-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCC
T ss_pred             CCCCeEEEEEECCCChhHHHHHHHHHHHHhC--C-cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Confidence            3456789999999999999999998887664  3 466654433                                    


Q ss_pred             --------------cCcHHHHHHhCCcCCCCcceecc-CCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        189 --------------HNEQGLARRLGVGSQLPQIALLT-DGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       189 --------------~~~~~l~~~~~v~~~~Pti~~~~-~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                                    +.+..+++++||++ +||+++.. +|+..... |..+.+.|.+++.+..
T Consensus       172 ~~~~~~~~~~~~~v~~~~~l~~~~gv~g-tPt~vi~~~~G~~~~~~-G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          172 NVPANVSTEQMKVLSDNEKLMDDLGANV-TPAIYYMSKENTLQQAV-GLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHTCCS-SCEEEEEETTTEEEEEE-SSCCHHHHHHHTTC--
T ss_pred             CccccCCHHHHHHHHHHHHHHHHcCCCC-CCEEEEECCCCCEEEec-CCCCHHHHHHHHHHHH
Confidence                          12356788999998 99999985 57643334 5568888888876554

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.00  E-value=2.5e-06  Score=70.91  Aligned_cols=59  Identities=14%  Similarity=0.254  Sum_probs=44.2

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-------HHHHHHhCCcCCCCcceeccCCeEE
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-------QGLARRLGVGSQLPQIALLTDGRTS  216 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-------~~l~~~~~v~~~~Pti~~~~~g~~~  216 (554)
                      ++.|+++||++|+++.+.+++......  +  +..+|++.+       ..+++.+|+.+ +|++  |.+|+.+
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~~--~--~~~vdi~~~~~~~~~~~~l~~~~g~~~-vP~i--~~~g~~i   79 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKEG--L--LEFVDITATSDTNEIQDYLQQLTGART-VPRV--FIGKECI   79 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTT--S--EEEEEGGGSTTHHHHHHHHHHHHSCCC-SCEE--EETTEEE
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCCC--c--cEEEEccCCCCHHHHHHHHHHHhCCCC-cCeE--EECCEEE
Confidence            677999999999999998886543321  1  666777765       35888999997 9997  4477643

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=97.99  E-value=8.7e-06  Score=77.56  Aligned_cols=89  Identities=16%  Similarity=0.269  Sum_probs=67.9

Q ss_pred             CCCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHH
Q psy16770        146 YTTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLAR  196 (554)
Q Consensus       146 ~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~  196 (554)
                      .++++||.|| +.||+.|....|.+.++.++++..++.+..|.++.                            +..+++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  134 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK  134 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence            3568999999 99999999999999999998875578888887654                            125677


Q ss_pred             HhCC-----cCCCCcceec-cCCeEEEEeCC----cccHHHHHHHHHHh
Q psy16770        197 RLGV-----GSQLPQIALL-TDGRTSFFKEP----SFSVQKMVEFFRLK  235 (554)
Q Consensus       197 ~~~v-----~~~~Pti~~~-~~g~~~~y~~g----~~~~~~i~~fl~~~  235 (554)
                      .||+     .. .|+.+++ ++|+++....+    ..+.+++.+.++..
T Consensus       135 ~ygv~~~~g~~-~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L  182 (221)
T 2c0d_A          135 NYNVLYDNSFA-LRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSI  182 (221)
T ss_dssp             HTTCEETTTEE-CEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HcCCcccCCCc-cceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            7888     35 7988888 68887655322    24678888887765

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=97.96  E-value=1.9e-05  Score=67.97  Aligned_cols=94  Identities=16%  Similarity=0.209  Sum_probs=74.8

Q ss_pred             cccc-ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLST-THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~L-t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +..| |.+++++.+   +.+.+++|-|+++||+.|   .+.|.++|+.+ + .+.|+.++   ++++++++++.  .|++
T Consensus        23 ~~~i~s~~e~e~fi---~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~-d~~F~~t~---~~~v~~~~~v~--~~~v   89 (124)
T 2l4c_A           23 PTWLTDVPAAMEFI---AATEVAVIGFFQDLEIPA---VPILHSMVQKF-P-GVSFGIST---DSEVLTHYNIT--GNTI   89 (124)
T ss_dssp             CEECCSHHHHHHHH---HTSSEEEEEECSCTTSTH---HHHHHHHHHHC-T-TSEEEEEC---CHHHHHHTTCC--SSCE
T ss_pred             ceEcCCHHHHHHHH---hcCCCEEEEEECCCCChh---HHHHHHHHHhC-C-CceEEEEC---hHHHHHHcCCC--CCeE
Confidence            3334 457788877   457789999999999998   78999999999 4 48998775   47899999997  5999


Q ss_pred             eeccCC--eEEEEeC---CcccHHHHHHHHHHh
Q psy16770        208 ALLTDG--RTSFFKE---PSFSVQKMVEFFRLK  235 (554)
Q Consensus       208 ~~~~~g--~~~~y~~---g~~~~~~i~~fl~~~  235 (554)
                      ++|+++  ....|.|   |..+.++|.+||...
T Consensus        90 vlfkkfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           90 CLFRLVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             EEEETTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             EEEEcCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            999875  3566665   356889999999864

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=97.93  E-value=2.2e-05  Score=72.02  Aligned_cols=88  Identities=11%  Similarity=0.076  Sum_probs=64.9

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------cHHHHHHhCCcC--
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------EQGLARRLGVGS--  202 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------~~~l~~~~~v~~--  202 (554)
                      +++++|.|| +.||+.|....|.++++.++++..++.+..|.++.                     +..+++.||+..  
T Consensus        51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~  130 (179)
T 3ixr_A           51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEK  130 (179)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEEE
T ss_pred             CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcccc
Confidence            457888888 99999999999999999999987789999888764                     336777788753  


Q ss_pred             ---------CCCcceec-cCCeEEEEeCCc---ccHHHHHHHHHH
Q psy16770        203 ---------QLPQIALL-TDGRTSFFKEPS---FSVQKMVEFFRL  234 (554)
Q Consensus       203 ---------~~Pti~~~-~~g~~~~y~~g~---~~~~~i~~fl~~  234 (554)
                               ..|+.+++ ++|++.....+.   ...+++++.+++
T Consensus       131 ~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~  175 (179)
T 3ixr_A          131 TMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKA  175 (179)
T ss_dssp             CCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHH
T ss_pred             cccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHH
Confidence                     04767777 788876544332   344666666654

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=97.91  E-value=0.00062  Score=65.42  Aligned_cols=206  Identities=14%  Similarity=0.092  Sum_probs=110.7

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccC---CceEEEEEEccCCCChhHHhHhCCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHR---TTIVFGVIVYDQEDSSSVFQRFKVPGD  312 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~---~~v~Fg~v~~~~~~~~~l~~k~~i~~~  312 (554)
                      +..++.+++++.+..   .++++++.|...--++.+..     ..+..+.   ..+.|+.++++...+.+++++|+|.+ 
T Consensus        14 v~~l~~~~f~~~i~~---~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~-   89 (244)
T 3q6o_A           14 LTLLQADTVRGAVLG---SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPG-   89 (244)
T ss_dssp             SEEECTTTHHHHHSS---CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCS-
T ss_pred             ceeCChhhHHHHHhh---CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCc-
Confidence            667788899887753   45777777754433322221     1122333   37999999996557899999999997 


Q ss_pred             CceEEEEeCCCCCC-CceeecCCCChhHHHhHHhc----CC---Cc---ccccccchhhhhhcC-CCCceEEEEEcCCCC
Q psy16770        313 KDSLLIFKEDKDRP-SASITMNSIPVPTLQDITDN----NP---YL---TLPRISSQSMLDAVC-PVKKLCVVLFSEDSP  380 (554)
Q Consensus       313 ~Ptlvvfk~~~~~~-~~~i~~~~~~~~~l~~fi~~----~~---~~---~v~~lt~~~~~~~~c-~~~~lcvvl~~~~~~  380 (554)
                      .||+++|+++.... ...+..+..+...|.++|..    +.   .+   .+...+..++.+..- ......+++|.... 
T Consensus        90 ~Pt~~~~~~g~~~~~g~~~~~~g~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~~~~~~~al~f~~~~-  168 (244)
T 3q6o_A           90 FPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGG-  168 (244)
T ss_dssp             SSEEEEECTTCCSSSCEECCCTTCCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHHCCCSEEEEEEECTT-
T ss_pred             cCEEEEEeCCCcCCCCeeEecCCCCHHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhcCCCceEEEEEEECC-
Confidence            99999998744321 11123333567666666543    32   11   222233333221110 12244445554432 


Q ss_pred             cchhHHHHHHHHHhhccCC-CCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCCeeEEEecCCCCCcccc
Q psy16770        381 EHDASRHTLRRFAQESRFV-HNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKD  459 (554)
Q Consensus       381 ~~~~~~~~l~~~a~~~~~~-~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~  459 (554)
                       ..    ..++++..  +. ...+.+..++.. ..++++.|-..     ..|.+++ +  +..+ +...+...       
T Consensus       169 -~~----~~~~~~~d--~~~~~~i~v~~~~~~-~~~l~~~f~v~-----~~Pslvl-~--~~~g-~~~~~~~~-------  224 (244)
T 3q6o_A          169 -SY----LAREVALD--LSQHKGVAVRRVLNT-EANVVRKFGVT-----DFPSCYL-L--FRNG-SVSRVPVL-------  224 (244)
T ss_dssp             -CC----HHHHHHHH--TTTCTTEEEEEEETT-CHHHHHHHTCC-----CSSEEEE-E--ETTS-CEEECCCS-------
T ss_pred             -cc----hHHHHHHH--hccCCceEEEEEeCc-hHHHHHHcCCC-----CCCeEEE-E--eCCC-CeEeeccc-------
Confidence             22    34444444  32 134777777653 57888888111     1234433 2  3233 22222321       


Q ss_pred             cchhhHHHHHHHHhhhc
Q psy16770        460 YNTTKDRLDAGLRSLVN  476 (554)
Q Consensus       460 ~~~t~e~l~~fl~~~~~  476 (554)
                       ..+++.+..+|+++.+
T Consensus       225 -~~~r~~~~~~l~~~~~  240 (244)
T 3q6o_A          225 -MESRSFYTAYLQRLSG  240 (244)
T ss_dssp             -SSSHHHHHHHHHTC--
T ss_pred             -cccHHHHHHHHHhCCC
Confidence             3478889999988765

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.90  E-value=2.9e-06  Score=79.35  Aligned_cols=55  Identities=24%  Similarity=0.433  Sum_probs=45.1

Q ss_pred             ccccccccCCCCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEecCc
Q psy16770        135 WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVHNE  191 (554)
Q Consensus       135 ~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~~~  191 (554)
                      ++|.....+. ..++++|+||+.||+||++++|.+   +++++.+.+ ++.|.+++++.+
T Consensus       102 ~~y~~l~~p~-~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~-~v~~~~~~v~~~  159 (197)
T 1un2_A          102 KQYTTLEKPV-AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVNFM  159 (197)
T ss_dssp             TTEEECSSCC-TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECSSS
T ss_pred             CCceEccCCC-CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC-CCEEEEeccCcC
Confidence            4566544333 357999999999999999999999   999999876 599999999865

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.89  E-value=9.2e-06  Score=68.75  Aligned_cols=57  Identities=16%  Similarity=0.276  Sum_probs=44.9

Q ss_pred             EEEEEEcccccccccchHHHHHHHHHhCCCCEE---EEEEEecCcH-------HHHHHhCCcCCCCcceeccCCeEE
Q psy16770        150 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVG---FFTVHVHNEQ-------GLARRLGVGSQLPQIALLTDGRTS  216 (554)
Q Consensus       150 ~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~---~~~Vd~~~~~-------~l~~~~~v~~~~Pti~~~~~g~~~  216 (554)
                      .++.|+++||++|+++.+.+++       .++.   +..+|++.++       .+++++|+.+ +|++.+  +|+.+
T Consensus        20 ~vv~f~~~~Cp~C~~~~~~L~~-------~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~-vP~v~i--~g~~i   86 (114)
T 2hze_A           20 KVTIFVKYTCPFCRNALDILNK-------FSFKRGAYEIVDIKEFKPENELRDYFEQITGGKT-VPRIFF--GKTSI   86 (114)
T ss_dssp             CEEEEECTTCHHHHHHHHHHTT-------SCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCS-SCEEEE--TTEEE
T ss_pred             CEEEEEeCCChhHHHHHHHHHH-------cCCCcCceEEEEccCCCChHHHHHHHHHHhCCCC-cCEEEE--CCEEE
Confidence            4777999999999988877664       3455   8889988774       7899999997 998743  78653

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=97.89  E-value=1.9e-05  Score=74.58  Aligned_cols=88  Identities=16%  Similarity=0.306  Sum_probs=67.4

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      +++++|.|| +.||++|....|.+.++.++++..++.+..|.++.                            +..+++.
T Consensus        48 Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~  127 (211)
T 2pn8_A           48 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKD  127 (211)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHHH
Confidence            468999999 99999999999999999999976678888887653                            1256777


Q ss_pred             hCCc------CCCCcceec-cCCeEEEEe-CC---cccHHHHHHHHHHh
Q psy16770        198 LGVG------SQLPQIALL-TDGRTSFFK-EP---SFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~------~~~Pti~~~-~~g~~~~y~-~g---~~~~~~i~~fl~~~  235 (554)
                      ||+.      . .|+.+++ ++|++.... +.   .++.+++++.++..
T Consensus       128 ygv~~~~~g~~-~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l  175 (211)
T 2pn8_A          128 YGVYLEDSGHT-LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  175 (211)
T ss_dssp             TTCEETTTTEE-CEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             cCCcccCCCcc-cceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            8873      4 8888888 688876543 21   13667888877764

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=97.89  E-value=1e-05  Score=78.36  Aligned_cols=86  Identities=19%  Similarity=0.296  Sum_probs=67.2

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------------cHHHHHHhCCc
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------------EQGLARRLGVG  201 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------------~~~l~~~~~v~  201 (554)
                      .+|+.|+++||+.|....|.+.+++++++..++.+..|+++.                           +..+++.||+.
T Consensus        36 vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~  115 (249)
T 3a2v_A           36 FVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLL  115 (249)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCC
T ss_pred             EEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCc
Confidence            456678999999999999999999999987689999998864                           34688999997


Q ss_pred             -------CCCCcceec-cCCeEEEEe-CC---cccHHHHHHHHHHh
Q psy16770        202 -------SQLPQIALL-TDGRTSFFK-EP---SFSVQKMVEFFRLK  235 (554)
Q Consensus       202 -------~~~Pti~~~-~~g~~~~y~-~g---~~~~~~i~~fl~~~  235 (554)
                             . +|++.++ ++|++.... +.   .++.++|...+...
T Consensus       116 ~~~~g~~~-~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al  160 (249)
T 3a2v_A          116 HAESATHT-VRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  160 (249)
T ss_dssp             CTTCSSSC-CEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             cccCCCcc-cceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence                   6 8988777 688875432 21   14678888877654

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=97.87  E-value=7.9e-06  Score=73.99  Aligned_cols=90  Identities=12%  Similarity=0.228  Sum_probs=64.4

Q ss_pred             CCCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------cHHHHHHhCCcC-
Q psy16770        146 YTTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------EQGLARRLGVGS-  202 (554)
Q Consensus       146 ~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------~~~l~~~~~v~~-  202 (554)
                      .++++++.|| +.||++|....|.+.++.++++..++.+..|+.+.                     +.++++.|||.+ 
T Consensus        32 ~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~  111 (164)
T 4gqc_A           32 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHE  111 (164)
T ss_dssp             TSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred             CCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCccc
Confidence            3567888888 99999999999999999998887788888887764                     335777777631 


Q ss_pred             --------CCCcceec-cCCeEEEEe-C----CcccHHHHHHHHHHh
Q psy16770        203 --------QLPQIALL-TDGRTSFFK-E----PSFSVQKMVEFFRLK  235 (554)
Q Consensus       203 --------~~Pti~~~-~~g~~~~y~-~----g~~~~~~i~~fl~~~  235 (554)
                              ..|+..++ ++|++.... +    ++.+.+++++.+++.
T Consensus       112 ~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l  158 (164)
T 4gqc_A          112 DLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKI  158 (164)
T ss_dssp             EETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHH
T ss_pred             ccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence                    15666666 678764322 1    334667777777654

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=97.87  E-value=7.2e-05  Score=64.09  Aligned_cols=102  Identities=14%  Similarity=0.129  Sum_probs=72.5

Q ss_pred             CccccCCcccHHHHHhhhhcCCceEEEEEecCCchh-------HHHHHHhh---ccCCceEEEEEEccCCCChhHHhHhC
Q psy16770        239 KLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVR-------LRYLINAF---KHRTTIVFGVIVYDQEDSSSVFQRFK  308 (554)
Q Consensus       239 ~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~-------~~~~~~a~---~~~~~v~Fg~v~~~~~~~~~l~~k~~  308 (554)
                      ..+..++.+++++.+..   .++++++.|...--++       +...+...   ...+.+.|+.++++  .+.+++++|+
T Consensus        15 ~~v~~l~~~~f~~~~~~---~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~   89 (127)
T 3h79_A           15 SRVVELTDETFDSIVMD---PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGE--KYPDVIERMR   89 (127)
T ss_dssp             CCCEECCTTTHHHHHTC---TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETT--TCHHHHHHTT
T ss_pred             CceEECChhhHHHHHhC---CCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcc--ccHhHHHhcC
Confidence            33677899999998852   3667777775433222       22222221   23467999999998  6889999999


Q ss_pred             CCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        309 VPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       309 i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      |.+ +||+++|+++... ....+.|..+.+.|.+||+.+
T Consensus        90 v~~-~Pt~~~~~~g~~~-~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           90 VSG-FPTMRYYTRIDKQ-EPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             CCS-SSEEEEECSSCSS-SCEECCSCCCHHHHHHHHHHH
T ss_pred             Ccc-CCEEEEEeCCCCC-CceEecCCccHHHHHHHHHhc
Confidence            997 9999999875442 124577888999999999764

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=97.86  E-value=2.2e-05  Score=72.55  Aligned_cols=90  Identities=14%  Similarity=0.204  Sum_probs=65.4

Q ss_pred             CCcEEEEEEc-ccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------------------------cHHHHHHhCC
Q psy16770        147 TTPHLILFYS-DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------------------------EQGLARRLGV  200 (554)
Q Consensus       147 ~~~~lV~Fya-~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------------------------~~~l~~~~~v  200 (554)
                      +++++|.||+ .||+.|....|.+.++.++++..++.+..|.++.                         +..+++.||+
T Consensus        30 Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv  109 (186)
T 1n8j_A           30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  109 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCC
Confidence            4689999995 9999999999999999998876678888887653                         1245666666


Q ss_pred             c----C-CCCcceec-cCCeEEEEeCCc----ccHHHHHHHHHHhC
Q psy16770        201 G----S-QLPQIALL-TDGRTSFFKEPS----FSVQKMVEFFRLKL  236 (554)
Q Consensus       201 ~----~-~~Pti~~~-~~g~~~~y~~g~----~~~~~i~~fl~~~~  236 (554)
                      .    + ..|+.+++ ++|++.....+.    ++.+++.+.++...
T Consensus       110 ~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          110 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             ccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            5    1 05888887 688876544221    25778888777553

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=97.86  E-value=7.4e-05  Score=62.13  Aligned_cols=96  Identities=13%  Similarity=0.162  Sum_probs=65.3

Q ss_pred             CCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEE
Q psy16770        244 LSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF  319 (554)
Q Consensus       244 ~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvf  319 (554)
                      .+.+++++.+..  ..++++++.|...--++.+...    ..+...+++.|+.++++  .+++++++|+|.+ .||+++|
T Consensus         6 ~~~~~f~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d--~~~~l~~~~~V~~-~PT~~~~   80 (105)
T 3zzx_A            6 KDQEDFTKQLNE--AGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVD--ECEDIAQDNQIAC-MPTFLFM   80 (105)
T ss_dssp             CSHHHHHHHHHH--TTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETT--TCHHHHHHTTCCB-SSEEEEE
T ss_pred             CCHHHHHHHHHh--cCCCEEEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEecc--cCHHHHHHcCCCe-ecEEEEE
Confidence            355788888865  2567888877544333322221    11233467899999987  7899999999997 9999999


Q ss_pred             eCCCCCCCceeecCCCChhHHHhHHhcCC
Q psy16770        320 KEDKDRPSASITMNSIPVPTLQDITDNNP  348 (554)
Q Consensus       320 k~~~~~~~~~i~~~~~~~~~l~~fi~~~~  348 (554)
                      +++..  .. ...| .+...|.+||+.|+
T Consensus        81 ~~G~~--v~-~~~G-~~~~~l~~~i~k~K  105 (105)
T 3zzx_A           81 KNGQK--LD-SLSG-ANYDKLLELVEKNK  105 (105)
T ss_dssp             ETTEE--EE-EEES-CCHHHHHHHHHHHC
T ss_pred             ECCEE--EE-EEeC-cCHHHHHHHHHhcC
Confidence            86432  12 2234 47788999998764

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=97.82  E-value=5.9e-05  Score=68.49  Aligned_cols=92  Identities=13%  Similarity=0.111  Sum_probs=68.7

Q ss_pred             CCcEEEEEEccccc-ccccchHHHHHHHHHhCC--CCEEEEEEEecC-------------------------------cH
Q psy16770        147 TTPHLILFYSDWCF-ACLQVEPIFKKLMDELSP--LGVGFFTVHVHN-------------------------------EQ  192 (554)
Q Consensus       147 ~~~~lV~Fya~wC~-~C~~l~p~~~~~a~~l~~--~~v~~~~Vd~~~-------------------------------~~  192 (554)
                      +++++|.||+.||+ .|....|.++++.++++.  .++.+..|.++.                               ..
T Consensus        28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~  107 (170)
T 3me7_A           28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF  107 (170)
T ss_dssp             TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred             CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence            56899999999997 599999999999999963  357887776641                               12


Q ss_pred             HHHHHhCC---------cCCCCcceec-cCCeEEE-EeCCcccHHHHHHHHHHhCCCC
Q psy16770        193 GLARRLGV---------GSQLPQIALL-TDGRTSF-FKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       193 ~l~~~~~v---------~~~~Pti~~~-~~g~~~~-y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      .+++.||+         .. .|++.++ ++|++.. +.|...+.++|.+.+.+.....
T Consensus       108 ~~~~~~g~~~~~~~~~~~~-~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~~~~  164 (170)
T 3me7_A          108 KLLDAIDFRFMTAGNDFIH-PNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARGEG  164 (170)
T ss_dssp             HHHHHTTCCCEEETTEEEC-CCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHTTCS
T ss_pred             HHHHHCCeEEecCCCcccc-CceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhhccc
Confidence            46666554         32 5666666 7898864 4665567899999999887654

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=97.79  E-value=8.7e-05  Score=67.78  Aligned_cols=112  Identities=10%  Similarity=0.060  Sum_probs=73.7

Q ss_pred             HHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecC-------CchhHHHH-----HHhhccC-----CceEEEE
Q psy16770        230 EFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRS-------LPVRLRYL-----INAFKHR-----TTIVFGV  292 (554)
Q Consensus       230 ~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~-------~~~~~~~~-----~~a~~~~-----~~v~Fg~  292 (554)
                      +++....+.. +..+|++++++++.+  ..+.++++.|...       --.+.+.+     ..|..+.     +++.|+.
T Consensus        10 ~l~~l~~~~~-vi~lt~~nF~~~v~~--~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~k   86 (178)
T 3ga4_A           10 DILQLKDDTG-VITVTADNYPLLSRG--VPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFT   86 (178)
T ss_dssp             HHHTTCCTTS-EEECCTTTHHHHTTC--CTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHhhccCC-CEECCHHHHHHHHcc--cCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEE
Confidence            3333334444 677899999998853  2456777777651       11222221     1222333     7899999


Q ss_pred             EEccCCCChhHHhHhCCCCCCceEEEEeCCCCCC---------Cceee---cC-CCChhHHHhHHhcC
Q psy16770        293 IVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRP---------SASIT---MN-SIPVPTLQDITDNN  347 (554)
Q Consensus       293 v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~---------~~~i~---~~-~~~~~~l~~fi~~~  347 (554)
                      +|++  .+++++++|+|.+ .|||++|+++....         ....+   .+ ..+.+.|.+||...
T Consensus        87 vD~d--~~~~la~~~~I~s-iPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~  151 (178)
T 3ga4_A           87 VDVN--EVPQLVKDLKLQN-VPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKI  151 (178)
T ss_dssp             EETT--TCHHHHHHTTCCS-SCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHH
T ss_pred             EECc--cCHHHHHHcCCCC-CCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHh
Confidence            9988  7999999999997 99999999865332         11111   23 67788899999765

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=97.78  E-value=2.9e-05  Score=62.31  Aligned_cols=68  Identities=19%  Similarity=0.346  Sum_probs=50.5

Q ss_pred             EEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec--CcHHHHHHh-CCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770        150 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH--NEQGLARRL-GVGSQLPQIALLTDGRTSFFKEPSFSVQ  226 (554)
Q Consensus       150 ~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~--~~~~l~~~~-~v~~~~Pti~~~~~g~~~~y~~g~~~~~  226 (554)
                      -++.|+++||++|+++.+.+++.       ++.+..+|.+  ....+.+++ ++.+ +|++.  .+|+.   .+|.   +
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~-------~i~~~~vdv~~~~~~~l~~~~~~~~~-vP~l~--~~g~~---i~g~---~   70 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKK-------GVKYTDIDASTSLRQEMVQRANGRNT-FPQIF--IGDYH---VGGC---D   70 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHH-------TCCEEEECSCHHHHHHHHHHHHSSCC-SCEEE--ETTEE---CCSH---H
T ss_pred             eEEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCHHHHHHHHHHhCCCCC-cCEEE--ECCEE---EeCh---H
Confidence            36779999999999998888763       3667788887  566788889 9997 99984  37753   3443   5


Q ss_pred             HHHHHHH
Q psy16770        227 KMVEFFR  233 (554)
Q Consensus       227 ~i~~fl~  233 (554)
                      +|.++.+
T Consensus        71 ~i~~~~~   77 (89)
T 2klx_A           71 DLYALEN   77 (89)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5666554

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=97.76  E-value=4.8e-05  Score=73.35  Aligned_cols=88  Identities=16%  Similarity=0.303  Sum_probs=68.0

Q ss_pred             CCcEEEEEEc-ccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFYS-DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fya-~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      +++++|.||+ .||+.|....|.+.++++++++.++.+..|.++.                            +..+++.
T Consensus        77 Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~  156 (240)
T 3qpm_A           77 GKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKD  156 (240)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHH
T ss_pred             CCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHHH
Confidence            4689999999 9999999999999999999987789998888764                            2357788


Q ss_pred             hCCc------CCCCcceec-cCCeEEEEe-C---CcccHHHHHHHHHHh
Q psy16770        198 LGVG------SQLPQIALL-TDGRTSFFK-E---PSFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~------~~~Pti~~~-~~g~~~~y~-~---g~~~~~~i~~fl~~~  235 (554)
                      ||+.      . +|+++++ ++|++.... +   ..++.+++++.+...
T Consensus       157 ygv~~~~~g~~-~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          157 YGVYLEDQGHT-LRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             TTCEETTTTEE-CEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             hCCccccCCCc-cceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            8887      5 7988888 788875432 2   124567777777643

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.75  E-value=2.1e-05  Score=68.31  Aligned_cols=56  Identities=20%  Similarity=0.424  Sum_probs=42.9

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc---H----HHHHHhCCcCCCCcceeccCCeEE
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE---Q----GLARRLGVGSQLPQIALLTDGRTS  216 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~---~----~l~~~~~v~~~~Pti~~~~~g~~~  216 (554)
                      ++.|+++||++|+++.+.+++.       ++.+..+|++.+   +    .+++.+|+.+ +|++.  .+|+.+
T Consensus        29 vvvf~~~~Cp~C~~~~~~L~~~-------~i~~~~vdid~~~~~~~~~~~l~~~~g~~~-vP~l~--i~G~~i   91 (130)
T 2cq9_A           29 VVIFSKTSCSYCTMAKKLFHDM-------NVNYKVVELDLLEYGNQFQDALYKMTGERT-VPRIF--VNGTFI   91 (130)
T ss_dssp             EEEEECSSCSHHHHHHHHHHHH-------TCCCEEEETTTSTTHHHHHHHHHHHHSSCC-SSEEE--ETTEEE
T ss_pred             EEEEEcCCChHHHHHHHHHHHc-------CCCcEEEECcCCcCcHHHHHHHHHHhCCCC-cCEEE--ECCEEE
Confidence            4449999999999999988864       245667777765   4    3888999997 99984  478654

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=97.73  E-value=8.3e-05  Score=66.82  Aligned_cols=85  Identities=12%  Similarity=0.106  Sum_probs=59.2

Q ss_pred             CCcEEEEEEc-ccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------------------cHHHHHHhCCc-
Q psy16770        147 TTPHLILFYS-DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------------------EQGLARRLGVG-  201 (554)
Q Consensus       147 ~~~~lV~Fya-~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------------------~~~l~~~~~v~-  201 (554)
                      +++++|.||+ .||++|....|.++++.+++  .++.+..|+++.                       +..+++.||+. 
T Consensus        42 gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~  119 (163)
T 1psq_A           42 GKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLI  119 (163)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBC
T ss_pred             CCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCcc
Confidence            4689999995 99999999999999998888  368888887653                       23456666665 


Q ss_pred             ---CCC--Ccceec-cCCeEEEEeCC-----cccHHHHHHHHHH
Q psy16770        202 ---SQL--PQIALL-TDGRTSFFKEP-----SFSVQKMVEFFRL  234 (554)
Q Consensus       202 ---~~~--Pti~~~-~~g~~~~y~~g-----~~~~~~i~~fl~~  234 (554)
                         + +  |+..++ ++|++.....|     ..+.+++++.+++
T Consensus       120 ~~~g-~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A          120 NEWH-LLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             TTTC-SBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             ccCC-ceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence               2 3  777777 67877554422     2234667666653

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=97.69  E-value=2.6e-05  Score=69.19  Aligned_cols=56  Identities=20%  Similarity=0.424  Sum_probs=42.6

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc---H----HHHHHhCCcCCCCcceeccCCeEE
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE---Q----GLARRLGVGSQLPQIALLTDGRTS  216 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~---~----~l~~~~~v~~~~Pti~~~~~g~~~  216 (554)
                      ++.|+++||++|+++.+.+++.       ++.+..+|++.+   +    .+++++|+.+ +|++.  .+|+.+
T Consensus        51 Vvvf~~~~Cp~C~~~k~~L~~~-------~i~~~~vdId~~~~~~~~~~~L~~~~g~~t-vP~if--i~G~~i  113 (146)
T 2ht9_A           51 VVIFSKTSCSYCTMAKKLFHDM-------NVNYKVVELDLLEYGNQFQDALYKMTGERT-VPRIF--VNGTFI  113 (146)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH-------TCCCEEEEGGGCTTHHHHHHHHHHHHSCCC-SCEEE--ETTEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCCeEEEECccCcCCHHHHHHHHHHhCCCC-cCeEE--ECCEEE
Confidence            3449999999999999988865       245666777655   3    3888999997 99984  478643

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.69  E-value=0.00014  Score=67.29  Aligned_cols=42  Identities=21%  Similarity=0.441  Sum_probs=35.0

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEE
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVH  187 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd  187 (554)
                      ...++.+++|+.+||++|.++.|.+.++.+.+.. .+.+..+.
T Consensus        20 ~~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p   61 (195)
T 2znm_A           20 QSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS-DAYLRTEH   61 (195)
T ss_dssp             SSSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEE
T ss_pred             CCCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC-ceEEEEec
Confidence            3567889999999999999999999999988865 46666554

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=97.67  E-value=4.1e-05  Score=61.70  Aligned_cols=69  Identities=17%  Similarity=0.315  Sum_probs=51.4

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-----Cc----HHHHHHhCCcCCCCcceeccCCeEEEEeCC
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-----NE----QGLARRLGVGSQLPQIALLTDGRTSFFKEP  221 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-----~~----~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g  221 (554)
                      ++.|+++||++|+++.+.+++.       ++.+-.+|.+     ..    .++.+.+++.+ +|++.+  +|+.   .+|
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~-------gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~-vP~l~~--~g~~---i~G   80 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKRE-------GVDFEVIWIDKLEGEERKKVIEKVHSISGSYS-VPVVVK--GDKH---VLG   80 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHH-------TCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSC-SCEEEE--TTEE---EES
T ss_pred             EEEEECCCChHHHHHHHHHHHc-------CCCcEEEEeeeCCccchHHHHHHHHHhcCCCC-cCEEEE--CCEE---EeC
Confidence            5669999999999988877764       3445556666     33    66778899997 999887  6753   356


Q ss_pred             cccHHHHHHHHH
Q psy16770        222 SFSVQKMVEFFR  233 (554)
Q Consensus       222 ~~~~~~i~~fl~  233 (554)
                      . +.+.|.+++.
T Consensus        81 ~-~~~~l~~~l~   91 (92)
T 3ic4_A           81 Y-NEEKLKELIR   91 (92)
T ss_dssp             C-CHHHHHHHHH
T ss_pred             C-CHHHHHHHhc
Confidence            5 7788888874

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=97.67  E-value=7.5e-05  Score=72.59  Aligned_cols=88  Identities=16%  Similarity=0.302  Sum_probs=66.3

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      +++++|.|| +.||+.|....|.+.+++++++..++.+..|.++.                            +..+++.
T Consensus        91 GK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~  170 (254)
T 3tjj_A           91 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKD  170 (254)
T ss_dssp             TSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHHH
Confidence            468889998 99999999999999999999987789998888764                            2357788


Q ss_pred             hCCc------CCCCcceec-cCCeEEEEe-C---CcccHHHHHHHHHHh
Q psy16770        198 LGVG------SQLPQIALL-TDGRTSFFK-E---PSFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~------~~~Pti~~~-~~g~~~~y~-~---g~~~~~~i~~fl~~~  235 (554)
                      ||+.      . +|+++++ ++|++.... +   ..++.++++..+...
T Consensus       171 ygv~~~~~g~~-~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~al  218 (254)
T 3tjj_A          171 YGVYLEDSGHT-LRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  218 (254)
T ss_dssp             HTCEETTTTEE-CEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             cCCccccCCCc-cceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            8875      3 6887777 678764432 1   124567777776543

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=97.67  E-value=3.7e-05  Score=69.20  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=36.6

Q ss_pred             CCcEEEEEE-cccccccc-cchHHHHHHHHHhCCCCEE-EEEEEecC
Q psy16770        147 TTPHLILFY-SDWCFACL-QVEPIFKKLMDELSPLGVG-FFTVHVHN  190 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~-~l~p~~~~~a~~l~~~~v~-~~~Vd~~~  190 (554)
                      +++++|.|| +.||+.|. ...|.+.++.++++..|+. +..|..+.
T Consensus        35 gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~   81 (162)
T 1tp9_A           35 GKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVND   81 (162)
T ss_dssp             TSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence            568899999 89999999 8999999999988755677 77776543

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.66  E-value=4.7e-05  Score=62.68  Aligned_cols=72  Identities=18%  Similarity=0.337  Sum_probs=51.5

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHh-----CCcCCCCcceeccCCeEEEEeC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL-----GVGSQLPQIALLTDGRTSFFKE  220 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~-----~v~~~~Pti~~~~~g~~~~y~~  220 (554)
                      +...-++.|+++||++|+++.+.+++.       ++.+..+|.+.++.+.+.+     |..+ +|++  |.+|+.   .|
T Consensus        13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~~-------~i~y~~idI~~~~~~~~~l~~~~~g~~~-vP~i--fi~g~~---ig   79 (99)
T 3qmx_A           13 AVSAKIEIYTWSTCPFCMRALALLKRK-------GVEFQEYCIDGDNEAREAMAARANGKRS-LPQI--FIDDQH---IG   79 (99)
T ss_dssp             CCCCCEEEEECTTCHHHHHHHHHHHHH-------TCCCEEEECTTCHHHHHHHHHHTTTCCC-SCEE--EETTEE---EE
T ss_pred             cCCCCEEEEEcCCChhHHHHHHHHHHC-------CCCCEEEEcCCCHHHHHHHHHHhCCCCC-CCEE--EECCEE---Ee
Confidence            344456779999999999999888754       4678889998887665544     8886 9987  457753   35


Q ss_pred             CcccHHHHHHHHH
Q psy16770        221 PSFSVQKMVEFFR  233 (554)
Q Consensus       221 g~~~~~~i~~fl~  233 (554)
                      |.   ++|..+..
T Consensus        80 G~---d~l~~~~~   89 (99)
T 3qmx_A           80 GC---DDIYALDG   89 (99)
T ss_dssp             SH---HHHHHHHH
T ss_pred             Ch---HHHHHHHH
Confidence            54   55655543

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=97.65  E-value=5e-05  Score=59.54  Aligned_cols=68  Identities=16%  Similarity=0.336  Sum_probs=49.5

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH----HHHHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ----GLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ  226 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~----~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~  226 (554)
                      ++.|+++||++|+++.+.+++.       ++.+..+|.+.++    .+.+.+++.+ +|++.  .+|+.+   +|.   +
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-------~i~~~~~~i~~~~~~~~~~~~~~~~~~-vP~l~--~~g~~i---~g~---~   66 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK-------GVSFQELPIDGNAAKREEMIKRSGRTT-VPQIF--IDAQHI---GGY---D   66 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------TCCCEEEECTTCSHHHHHHHHHHSSCC-SCEEE--ETTEEE---ESH---H
T ss_pred             EEEEECCCChhHHHHHHHHHHC-------CCCcEEEECCCCHHHHHHHHHHhCCCC-cCEEE--ECCEEE---eCH---H
Confidence            5679999999999998887753       4667778887653    3567889997 99984  477643   342   6


Q ss_pred             HHHHHHHH
Q psy16770        227 KMVEFFRL  234 (554)
Q Consensus       227 ~i~~fl~~  234 (554)
                      +|.+++++
T Consensus        67 ~i~~~~~~   74 (82)
T 1fov_A           67 DLYALDAR   74 (82)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence            67776653

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=97.64  E-value=4.4e-05  Score=69.24  Aligned_cols=44  Identities=9%  Similarity=0.079  Sum_probs=36.9

Q ss_pred             CCcEEEEEE-ccccccccc-chHHHHHHHHHhCCCCE-EEEEEEecC
Q psy16770        147 TTPHLILFY-SDWCFACLQ-VEPIFKKLMDELSPLGV-GFFTVHVHN  190 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~-l~p~~~~~a~~l~~~~v-~~~~Vd~~~  190 (554)
                      +++++|.|| +.||+.|.. ..|.+.+++++++..|+ .+..|+.+.
T Consensus        31 Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~   77 (167)
T 2wfc_A           31 GKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVND   77 (167)
T ss_dssp             TSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSC
T ss_pred             CCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            457778776 999999999 99999999998876678 888887654

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=97.61  E-value=0.00017  Score=64.86  Aligned_cols=71  Identities=13%  Similarity=0.148  Sum_probs=52.4

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------------------cHHHHHHhCCcC
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------------------EQGLARRLGVGS  202 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------------------~~~l~~~~~v~~  202 (554)
                      +++++|.|| +.||+.|....|.+.++.+++  .++.+..|+++.                       +..+++.||+..
T Consensus        43 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~  120 (165)
T 1q98_A           43 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDI  120 (165)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEE
T ss_pred             CCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHHhCcee
Confidence            468899998 899999999999999999888  367777776543                       245677777742


Q ss_pred             --------CCCcceec-cCCeEEEEe
Q psy16770        203 --------QLPQIALL-TDGRTSFFK  219 (554)
Q Consensus       203 --------~~Pti~~~-~~g~~~~y~  219 (554)
                              ..|+.+++ ++|++....
T Consensus       121 ~~~~~~g~~~p~~~liD~~G~i~~~~  146 (165)
T 1q98_A          121 QTGPLAGLTSRAVIVLDEQNNVLHSQ  146 (165)
T ss_dssp             CSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             cccccCCccceeEEEEcCCCEEEEEE
Confidence                    02777777 677765544

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=97.61  E-value=0.0002  Score=62.35  Aligned_cols=97  Identities=12%  Similarity=0.135  Sum_probs=68.4

Q ss_pred             ccCCcccHHHHHhhhhcCCceEEEEEecCCc--hhHH-----HHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        242 VPLSATNVDAFLDNWREDNKVHALLFQRSLP--VRLR-----YLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~--~~~~-----~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      ..+|+++|++++.+   ...++++.|....-  .+.+     .-..+.++.++++|+.++.+  .+++++.+|+|.+ .|
T Consensus        18 ~~vt~~~F~~~v~~---~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvD--e~~~la~~ygV~s-iP   91 (137)
T 2qsi_A           18 TLVDEATVDDFIAH---SGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAE--AERGLMARFGVAV-CP   91 (137)
T ss_dssp             EEECTTTHHHHHHT---SSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGG--GHHHHHHHHTCCS-SS
T ss_pred             cccCHhHHHHHHhc---CCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECC--CCHHHHHHcCCcc-CC
Confidence            35688999998853   34477777754322  2222     11223366789999999987  7899999999997 99


Q ss_pred             eEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        315 SLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      |+++||++..-   ....|-.+...|.++|+.+
T Consensus        92 TlilFkdG~~v---~~~vG~~~k~~l~~~l~~~  121 (137)
T 2qsi_A           92 SLAVVQPERTL---GVIAKIQDWSSYLAQIGAM  121 (137)
T ss_dssp             EEEEEECCEEE---EEEESCCCHHHHHHHHHHH
T ss_pred             EEEEEECCEEE---EEEeCCCCHHHHHHHHHHH
Confidence            99999985431   2345667888888888743

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=97.60  E-value=3.9e-05  Score=65.32  Aligned_cols=59  Identities=17%  Similarity=0.372  Sum_probs=43.6

Q ss_pred             EEEEEcccccccccc-hHHHHHHHHHhCCCCEEEEEEEecCcH-------HHHHHhCCcCCCCcceeccCCeEE
Q psy16770        151 LILFYSDWCFACLQV-EPIFKKLMDELSPLGVGFFTVHVHNEQ-------GLARRLGVGSQLPQIALLTDGRTS  216 (554)
Q Consensus       151 lV~Fya~wC~~C~~l-~p~~~~~a~~l~~~~v~~~~Vd~~~~~-------~l~~~~~v~~~~Pti~~~~~g~~~  216 (554)
                      ++.|+++||++|+++ .+.+++...    ..+.+..+|.+.++       .+.+.+|+.+ +|++  |.+|+.+
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~~----~~i~~~~vdid~~~~~~~~~~~l~~~~g~~t-vP~v--fi~g~~i   93 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLKV----PRSKVLVLQLNDMKEGADIQAALYEINGQRT-VPNI--YINGKHI   93 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSCC----CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCS-SCEE--EETTEEE
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcCC----CCCCeEEEECccCCChHHHHHHHHHHhCCCC-cCEE--EECCEEE
Confidence            566999999999987 666553220    12778888988764       5888999997 9986  5678653

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=97.60  E-value=8.6e-05  Score=67.25  Aligned_cols=52  Identities=15%  Similarity=0.174  Sum_probs=40.5

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH---HHHHHhCC
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ---GLARRLGV  200 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~---~l~~~~~v  200 (554)
                      +++++|.|| +.||+.|....|.+.++.+++  .++.+..|.++...   ..++++++
T Consensus        47 gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~d~~~~~~~~~~~~~~  102 (171)
T 2yzh_A           47 DVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSMDLPFAQKRFCESFNI  102 (171)
T ss_dssp             SSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESSCHHHHHHHHHHTTC
T ss_pred             CCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeCCCHHHHHHHHHHcCC
Confidence            568899998 899999999999999999888  36888888876532   23445544

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.60  E-value=0.00017  Score=65.50  Aligned_cols=43  Identities=19%  Similarity=0.128  Sum_probs=34.3

Q ss_pred             CCCCCcEEEEEEcccccccccchHHHHHHHHHh--CCCCEEEEEEE
Q psy16770        144 KSYTTPHLILFYSDWCFACLQVEPIFKKLMDEL--SPLGVGFFTVH  187 (554)
Q Consensus       144 ~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l--~~~~v~~~~Vd  187 (554)
                      ....++.++.|+..||++|+++.|.+.++.+++  .+ ++.+...+
T Consensus        24 ~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~-~v~~~~~~   68 (175)
T 1z6m_A           24 ESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKL   68 (175)
T ss_dssp             CTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred             CCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCC-cEEEEEEe
Confidence            334567899999999999999999999988887  54 47666554

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=97.56  E-value=0.00011  Score=64.22  Aligned_cols=97  Identities=13%  Similarity=0.127  Sum_probs=68.0

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCC--c-----hhHHHHHHhhccCCc-eEEEEEEccCCCChhHHhHhCCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSL--P-----VRLRYLINAFKHRTT-IVFGVIVYDQEDSSSVFQRFKVPGD  312 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~--~-----~~~~~~~~a~~~~~~-v~Fg~v~~~~~~~~~l~~k~~i~~~  312 (554)
                      ...+|+++|++.+.    .+.++++.|....  -     -....-..+.++.++ ++|+.++.+  .+++++.+|+|.+ 
T Consensus        19 ~~~~t~~~F~~~v~----~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvD--e~~~lA~~ygV~s-   91 (140)
T 2qgv_A           19 WTPVSESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLE--QSEAIGDRFGAFR-   91 (140)
T ss_dssp             CEECCHHHHHHHHH----TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHH--HHHHHHHHHTCCS-
T ss_pred             CccCCHHHHHHHHh----CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECC--CCHHHHHHcCCcc-
Confidence            45778999999884    3555666664321  1     112222234466778 999999988  6899999999997 


Q ss_pred             CceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        313 KDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       313 ~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      .||+++||++..-   ....|-.+...|.+||+.+
T Consensus        92 IPTlilFk~G~~v---~~~~G~~~k~~l~~~i~~~  123 (140)
T 2qgv_A           92 FPATLVFTGGNYR---GVLNGIHPWAELINLMRGL  123 (140)
T ss_dssp             SSEEEEEETTEEE---EEEESCCCHHHHHHHHHHH
T ss_pred             CCEEEEEECCEEE---EEEecCCCHHHHHHHHHHH
Confidence            9999999985431   2345667878888888754

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=97.55  E-value=6.2e-05  Score=62.53  Aligned_cols=65  Identities=20%  Similarity=0.283  Sum_probs=47.3

Q ss_pred             EEEEEc-----ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH----HHHHhCCcCCCCcceeccCCeEEEEeCC
Q psy16770        151 LILFYS-----DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG----LARRLGVGSQLPQIALLTDGRTSFFKEP  221 (554)
Q Consensus       151 lV~Fya-----~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~----l~~~~~v~~~~Pti~~~~~g~~~~y~~g  221 (554)
                      ++.|++     +||++|+++.+.+++.       ++.+..+|.+.++.    +.+.+|+.+ +|++  |.+|+.   .||
T Consensus        19 vvvf~~g~~~~~~C~~C~~~~~~L~~~-------~i~~~~vdi~~~~~~~~~l~~~~g~~~-vP~v--~i~g~~---igg   85 (105)
T 2yan_A           19 VMLFMKGNKQEAKCGFSKQILEILNST-------GVEYETFDILEDEEVRQGLKAYSNWPT-YPQL--YVKGEL---VGG   85 (105)
T ss_dssp             EEEEESBCSSSBCTTHHHHHHHHHHHH-------TCCCEEEEGGGCHHHHHHHHHHHTCCS-SCEE--EETTEE---EEC
T ss_pred             EEEEEecCCCCCCCccHHHHHHHHHHC-------CCCeEEEECCCCHHHHHHHHHHHCCCC-CCeE--EECCEE---EeC
Confidence            344777     9999999999888764       46788999988766    556689997 9997  457864   455


Q ss_pred             cccHHHHHHH
Q psy16770        222 SFSVQKMVEF  231 (554)
Q Consensus       222 ~~~~~~i~~f  231 (554)
                      .   +++..+
T Consensus        86 ~---d~~~~l   92 (105)
T 2yan_A           86 L---DIVKEL   92 (105)
T ss_dssp             H---HHHHHH
T ss_pred             h---HHHHHH
Confidence            4   445443

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=97.51  E-value=0.0046  Score=66.20  Aligned_cols=167  Identities=17%  Similarity=0.191  Sum_probs=97.8

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCc-------hhHHHHHHhhc-cCCceEEEEEEccCCCChhHHhHhCCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLP-------VRLRYLINAFK-HRTTIVFGVIVYDQEDSSSVFQRFKVPGD  312 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~-------~~~~~~~~a~~-~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~  312 (554)
                      +..++.+++++.+..   .++++++.|...--       +.+...+.... ....+.|+.++++...+.+++++|+|.+ 
T Consensus        14 V~~Lt~~~f~~~v~~---~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~-   89 (519)
T 3t58_A           14 LTLLDADSVRPTVLG---SSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAG-   89 (519)
T ss_dssp             SEEECTTTHHHHHSS---CSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCS-
T ss_pred             cEECChHHHHHHHHh---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcc-
Confidence            667788899887743   45777776744322       22333332221 1237999999997546889999999997 


Q ss_pred             CceEEEEeCCCCCC-CceeecCCCChhHHHhHHhc----CC------CcccccccchhhhhhcC-CCCceEEEEEcCCCC
Q psy16770        313 KDSLLIFKEDKDRP-SASITMNSIPVPTLQDITDN----NP------YLTLPRISSQSMLDAVC-PVKKLCVVLFSEDSP  380 (554)
Q Consensus       313 ~Ptlvvfk~~~~~~-~~~i~~~~~~~~~l~~fi~~----~~------~~~v~~lt~~~~~~~~c-~~~~lcvvl~~~~~~  380 (554)
                      .||+++|+++.... ......+..+...|.++|..    +.      .|.+..++.+++.+.+- ......+|+|.....
T Consensus        90 ~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~it~~~l~~~l~~~~~~~vallF~~~~s  169 (519)
T 3t58_A           90 FPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDS  169 (519)
T ss_dssp             BSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCSCCCTTCCCCSBCCHHHHTTGGGSCCCSEEEEEEECTTC
T ss_pred             cCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccccCCCCCCccCcCCHHHHHHHhccCCCCeEEEEecCCch
Confidence            99999998643311 12345566777766666643    32      12233444444422221 123555666654431


Q ss_pred             cchhHHHHHHHHHhhccCCC-CceEEEEEecccchHHHHhh
Q psy16770        381 EHDASRHTLRRFAQESRFVH-NNIAFMYVFIEKQPEFVNAL  420 (554)
Q Consensus       381 ~~~~~~~~l~~~a~~~~~~~-~~v~F~~vd~~~q~~~~~~~  420 (554)
                        .    ..++++..  +.. ..+.+..++.. ..++++.|
T Consensus       170 --~----~~~~~~ld--l~~~~~v~v~~v~~~-~~~l~~kf  201 (519)
T 3t58_A          170 --Y----LGREVTLD--LSQYHAVAVRRVLNT-ESDLVNKF  201 (519)
T ss_dssp             --C----HHHHHHHH--TTTCTTEEEEEEETT-CHHHHHHH
T ss_pred             --H----HHHHHHHH--hhccCCeeEEEecCc-hHHHHHHc
Confidence              1    34455544  432 34777777653 57888988

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=97.51  E-value=0.00026  Score=66.08  Aligned_cols=71  Identities=13%  Similarity=0.149  Sum_probs=53.9

Q ss_pred             CCCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------------------cHHHHHHhCCc
Q psy16770        146 YTTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------------------EQGLARRLGVG  201 (554)
Q Consensus       146 ~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------------------~~~l~~~~~v~  201 (554)
                      .+++++|.|| +.||+.|....|.++++.+++  .++.+..|.++.                       +..+++.||+.
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~  154 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVA  154 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCE
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhCce
Confidence            3568899998 789999999999999999998  368888887654                       23567777775


Q ss_pred             -------C-CCCcceec-cCCeEEEE
Q psy16770        202 -------S-QLPQIALL-TDGRTSFF  218 (554)
Q Consensus       202 -------~-~~Pti~~~-~~g~~~~y  218 (554)
                             + ..|+.+++ ++|++...
T Consensus       155 ~~~~~~~g~~~p~~~lID~~G~I~~~  180 (200)
T 3zrd_A          155 ITEGPLAGLTARAVVVLDGQDNVIYS  180 (200)
T ss_dssp             ECSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred             eecccCCCccccEEEEECCCCeEEEE
Confidence                   1 04888777 67877544

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=97.50  E-value=8.7e-05  Score=68.44  Aligned_cols=42  Identities=19%  Similarity=0.195  Sum_probs=35.1

Q ss_pred             cEEEEEEccccccccc-chHHHHHHHHHhCCCCEE-EEEEEecC
Q psy16770        149 PHLILFYSDWCFACLQ-VEPIFKKLMDELSPLGVG-FFTVHVHN  190 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~-l~p~~~~~a~~l~~~~v~-~~~Vd~~~  190 (554)
                      ++|+.|++.||+.|.. ..|.+.+++++++..|+. +..|+.+.
T Consensus        59 vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~  102 (184)
T 3uma_A           59 VVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVND  102 (184)
T ss_dssp             EEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSC
T ss_pred             EEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCC
Confidence            4555566999999999 699999999999877788 88888765

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.50  E-value=0.00017  Score=58.35  Aligned_cols=75  Identities=17%  Similarity=0.375  Sum_probs=54.9

Q ss_pred             EEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHh-----CCcCCCCcceeccCCeEEEEeCCccc
Q psy16770        150 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRL-----GVGSQLPQIALLTDGRTSFFKEPSFS  224 (554)
Q Consensus       150 ~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~-----~v~~~~Pti~~~~~g~~~~y~~g~~~  224 (554)
                      -++.|..+||++|++....+++       .|+.+-.+|.+.+++..+.+     |.++ +|+|.+ .+|....   +. +
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~-------~gi~y~~idi~~d~~~~~~~~~~~~G~~t-VP~I~i-~Dg~~l~---~~-~   71 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTA-------NRIAYDEVDIEHNRAAAEFVGSVNGGNRT-VPTVKF-ADGSTLT---NP-S   71 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHH-------TTCCCEEEETTTCHHHHHHHHHHSSSSSC-SCEEEE-TTSCEEE---SC-C
T ss_pred             cEEEEcCCCCHhHHHHHHHHHh-------cCCceEEEEcCCCHHHHHHHHHHcCCCCE-eCEEEE-eCCEEEe---CC-C
Confidence            3677999999999987766553       36888999999887665443     6776 998754 6776543   33 5


Q ss_pred             HHHHHHHHHHhCC
Q psy16770        225 VQKMVEFFRLKLP  237 (554)
Q Consensus       225 ~~~i~~fl~~~~~  237 (554)
                      .++|.+++.+..+
T Consensus        72 ~~el~~~L~el~g   84 (92)
T 2lqo_A           72 ADEVKAKLVKIAG   84 (92)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcC
Confidence            6889888887654

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=97.49  E-value=0.00016  Score=65.15  Aligned_cols=85  Identities=13%  Similarity=0.044  Sum_probs=57.2

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-----------------------HHHHHHhCCcC
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-----------------------QGLARRLGVGS  202 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-----------------------~~l~~~~~v~~  202 (554)
                      +++++|.|| +.||++|....|.++++.++ +  ++.+..|.++..                       ..+++.||+..
T Consensus        46 Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~--~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~  122 (166)
T 3p7x_A           46 GKKKLISVVPSIDTGVCDQQTRKFNSDASK-E--EGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVM  122 (166)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHSCT-T--TSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEE
T ss_pred             CCcEEEEEECCCCCCccHHHHHHHHHHhhc-C--CCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCcc
Confidence            468888898 78999999999999998877 3  577777776542                       24455555541


Q ss_pred             -----CCCcceec-cCCeEEEE-eC----CcccHHHHHHHHHH
Q psy16770        203 -----QLPQIALL-TDGRTSFF-KE----PSFSVQKMVEFFRL  234 (554)
Q Consensus       203 -----~~Pti~~~-~~g~~~~y-~~----g~~~~~~i~~fl~~  234 (554)
                           ..|+.+++ ++|++... .+    +..+.+++.+.+++
T Consensus       123 ~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A          123 EELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             TTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             ccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence                 05877777 67877554 21    22345667666653

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.41  E-value=0.00017  Score=63.88  Aligned_cols=82  Identities=18%  Similarity=0.358  Sum_probs=59.6

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEE-------------------------------------
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVH-------------------------------------  187 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd-------------------------------------  187 (554)
                      ...+..++.|..++|++|+++.+.++++    .  ++++...+                                     
T Consensus        12 ~~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~--~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~   85 (147)
T 3gv1_A           12 GNGKLKVAVFSDPDCPFCKRLEHEFEKM----T--DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFP   85 (147)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHHHHTTC----C--SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCC
T ss_pred             CCCCEEEEEEECCCChhHHHHHHHHhhc----C--ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCC
Confidence            4567889999999999999999887653    2  23333221                                     


Q ss_pred             -----ec----CcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHhCC
Q psy16770        188 -----VH----NEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       188 -----~~----~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                           |.    ++..+++++||+| +||+++ .+|+.  .. |..+.+.|.+.|.+...
T Consensus        86 ~~~~~~~~~v~~~~~la~~~gI~g-tPt~vi-~nG~~--i~-G~~~~~~l~~~i~~~~~  139 (147)
T 3gv1_A           86 VGGSICDNPVAETTSLGEQFGFNG-TPTLVF-PNGRT--QS-GYSPMPQLEEIIRKNQQ  139 (147)
T ss_dssp             TTCCCCSCSHHHHHHHHHHTTCCS-SCEEEC-TTSCE--EE-SCCCTTHHHHHHHHTSC
T ss_pred             CccHHHHHHHHHHHHHHHHhCCCc-cCEEEE-ECCEE--ee-CCCCHHHHHHHHHHHHH
Confidence                 11    2567899999998 999998 67874  33 44577999998887654

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=97.41  E-value=0.00011  Score=59.22  Aligned_cols=56  Identities=18%  Similarity=0.423  Sum_probs=42.6

Q ss_pred             EEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH----HHHHhCCcCCCCcceeccCCeE
Q psy16770        150 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG----LARRLGVGSQLPQIALLTDGRT  215 (554)
Q Consensus       150 ~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~----l~~~~~v~~~~Pti~~~~~g~~  215 (554)
                      -++.|+++||++|+++.+.+++.       ++.+..+|.+.++.    +.+.+++.+ +|++  +.+|+.
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~~~~~~~~-vP~l--~~~g~~   66 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK-------GAEFNEIDASATPELRAEMQERSGRNT-FPQI--FIGSVH   66 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT-------TCCCEEEESTTSHHHHHHHHHHHTSSC-CCEE--EETTEE
T ss_pred             cEEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCCCHHHHHHHHHHhCCCC-cCEE--EECCEE
Confidence            36779999999999988877752       46788889887654    455889997 9975  457753

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=97.39  E-value=0.0012  Score=54.38  Aligned_cols=97  Identities=13%  Similarity=0.270  Sum_probs=68.7

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++++.+..   .++++++.|....-+..+...     .+..+.+.+.|+.++++  .+++++++|+|.+ .||
T Consensus         6 v~~l~~~~~~~~~~~---~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~-~Pt   79 (111)
T 3gnj_A            6 LEKLDTNTFEQLIYD---EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVE--EEKTLFQRFSLKG-VPQ   79 (111)
T ss_dssp             SEECCHHHHHHHHTT---SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TCHHHHHHTTCCS-SCE
T ss_pred             ceecCHHHHHHHHHh---cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECC--cChhHHHhcCCCc-CCE
Confidence            566788999988843   457777777655444333222     12245567999999988  6889999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++.. .  ....|..+...|.+||+.
T Consensus        80 ~~~~~~g~~-~--~~~~g~~~~~~l~~~l~~  107 (111)
T 3gnj_A           80 ILYFKDGEY-K--GKMAGDVEDDEVEQMIAD  107 (111)
T ss_dssp             EEEEETTEE-E--EEEESSCCHHHHHHHHHH
T ss_pred             EEEEECCEE-E--EEEeccCCHHHHHHHHHH
Confidence            999975432 1  245677788888888864

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.37  E-value=0.0011  Score=54.34  Aligned_cols=96  Identities=18%  Similarity=0.213  Sum_probs=69.1

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..+|.+++++.+.    .++++++.|....-+......     .+..+.+.+.|+.++++  .+.+++++|+|.+ .|+
T Consensus         6 v~~l~~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~i~~-~Pt   78 (109)
T 3tco_A            6 TLVLTEENFDEVIR----NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVD--ENQKIADKYSVLN-IPT   78 (109)
T ss_dssp             CEECCTTTHHHHHH----HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TCHHHHHHTTCCS-SSE
T ss_pred             EEEecHHHHHHHHh----cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccc--cCHHHHHhcCccc-CCE
Confidence            56778999998885    367777777655444332222     22255668999999987  7889999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++.. .  ....|..+.+.|.++|+.
T Consensus        79 ~~~~~~g~~-~--~~~~g~~~~~~l~~~l~~  106 (109)
T 3tco_A           79 TLIFVNGQL-V--DSLVGAVDEDTLESTVNK  106 (109)
T ss_dssp             EEEEETTEE-E--EEEESCCCHHHHHHHHHH
T ss_pred             EEEEcCCcE-E--EeeeccCCHHHHHHHHHH
Confidence            999965422 1  245677788888888864

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=97.36  E-value=0.00019  Score=57.06  Aligned_cols=75  Identities=12%  Similarity=0.139  Sum_probs=51.1

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc----HHHHHHhCC-----cCCCCcceeccCCeEEEEe
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE----QGLARRLGV-----GSQLPQIALLTDGRTSFFK  219 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~----~~l~~~~~v-----~~~~Pti~~~~~g~~~~y~  219 (554)
                      ..++.|+++||++|+++.+.+++.     +..+.+..||...+    .++.+.+|.     .+ +|++.+  +|+.+   
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~-----~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~-vP~i~i--~g~~i---   72 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEEN-----NIAFDETIIDDYAQRSKFYDEMNQSGKVIFPIST-VPQIFI--DDEHI---   72 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHT-----TCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCS-SCEEEE--TTEEE---
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHc-----CCCceEEEeecCCChhHHHHHHHHhCCCCCCCCc-cCEEEE--CCEEE---
Confidence            346779999999999988776642     22345555555544    457778888     86 999854  77643   


Q ss_pred             CCcccHHHHHHHHHHhCC
Q psy16770        220 EPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       220 ~g~~~~~~i~~fl~~~~~  237 (554)
                      ||.   +++.+++.+.+.
T Consensus        73 ~g~---~~i~~~~~~~~~   87 (89)
T 3msz_A           73 GGF---TELKANADKILN   87 (89)
T ss_dssp             ESH---HHHHHTHHHHTT
T ss_pred             eCh---HHHHHHHHHHhc
Confidence            453   777777776654

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=97.36  E-value=0.0013  Score=63.06  Aligned_cols=101  Identities=10%  Similarity=0.208  Sum_probs=70.1

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEec--CCc---hhHHHHHHhhccCCceEEEEEEccC---CCChhHHhHhCCC--
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQR--SLP---VRLRYLINAFKHRTTIVFGVIVYDQ---EDSSSVFQRFKVP--  310 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~--~~~---~~~~~~~~a~~~~~~v~Fg~v~~~~---~~~~~l~~k~~i~--  310 (554)
                      +..+|++++++.+.    .++++++.|..  .--   |.+..++..+.-.+.+.|+.++++.   ..+.+++++|+|.  
T Consensus         7 v~~Lt~~nF~~~i~----~~~~vlV~FyA~~pWCgl~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~~   82 (240)
T 2qc7_A            7 ALPLDTVTFYKVIP----KSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKE   82 (240)
T ss_dssp             CEECCTTHHHHHGG----GCSEEEEEECCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCGG
T ss_pred             ceECCHHHHHHHHc----CCCCEEEEEeCCCCCCcchHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCCC
Confidence            56788999999774    35666666654  221   2222222222223579999999542   2478999999999  


Q ss_pred             CCCceEEEEeCCC-CCCCceeecCCCChhHHHhHHhcCC
Q psy16770        311 GDKDSLLIFKEDK-DRPSASITMNSIPVPTLQDITDNNP  348 (554)
Q Consensus       311 ~~~Ptlvvfk~~~-~~~~~~i~~~~~~~~~l~~fi~~~~  348 (554)
                      + +||+++|+++. ..+  ..+.|..+...|.+||+.+.
T Consensus        83 ~-~PTl~~f~~G~~~~~--~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           83 S-YPVFYLFRDGDFENP--VPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             G-CSEEEEEETTCSSCC--EECCSCSCHHHHHHHHHHTT
T ss_pred             C-CCEEEEEeCCCcCcc--eeecCCCCHHHHHHHHHHhc
Confidence            7 99999999865 333  35678889999999999874

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=97.34  E-value=0.0007  Score=65.32  Aligned_cols=100  Identities=12%  Similarity=0.167  Sum_probs=68.6

Q ss_pred             ccccCCcccHHHHHhhhhcCCceEEEEEe--cC-C--chhHHHHHHhhcc-CCceEEEEEEccC---CCChhHHhHhCCC
Q psy16770        240 LIVPLSATNVDAFLDNWREDNKVHALLFQ--RS-L--PVRLRYLINAFKH-RTTIVFGVIVYDQ---EDSSSVFQRFKVP  310 (554)
Q Consensus       240 ~v~~~t~~~~~~fl~~~~~~~~~~v~~f~--~~-~--~~~~~~~~~a~~~-~~~v~Fg~v~~~~---~~~~~l~~k~~i~  310 (554)
                      .+..+|+++|++.+.    .++++++.|.  .. .  .|.+..++..+.. .+.+.|+.++|+.   ..+.+++++|+|.
T Consensus        17 ~v~~Lt~~nF~~vi~----~~~~vlV~Fy~~ApWCgl~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~   92 (248)
T 2c0g_A           17 GCVDLDELSFEKTVE----RFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVD   92 (248)
T ss_dssp             TCEECCTTTHHHHHT----TSSEEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCC
T ss_pred             CcEECCHHHHHHHHh----cCCCEEEEEECCCCCCccHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCC
Confidence            366789999999773    3556666554  22 1  2223333333322 5689999999983   1178999999999


Q ss_pred             --CCCceEEEEeCCC-CCCCceee--cCCCChhHHHhHHhcC
Q psy16770        311 --GDKDSLLIFKEDK-DRPSASIT--MNSIPVPTLQDITDNN  347 (554)
Q Consensus       311 --~~~Ptlvvfk~~~-~~~~~~i~--~~~~~~~~l~~fi~~~  347 (554)
                        + +||+++|+ +. ..+  ..+  .+..+...|.+||+.+
T Consensus        93 ~~~-~PTl~~F~-G~~~~~--~~y~~~G~~~~~~L~~fi~~~  130 (248)
T 2c0g_A           93 DKN-FPSIFLFK-GNADEY--VQLPSHVDVTLDNLKAFVSAN  130 (248)
T ss_dssp             TTS-CCEEEEES-SSSSSE--EECCTTSCCCHHHHHHHHHHH
T ss_pred             cCC-CCeEEEEe-CCcCcc--eeecccCCCCHHHHHHHHHHh
Confidence              7 99999998 54 223  335  6888999999999876

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=97.33  E-value=0.00081  Score=61.89  Aligned_cols=42  Identities=12%  Similarity=0.182  Sum_probs=34.5

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV  188 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~  188 (554)
                      ..++.+++|+.+||++|..+.|.+.++.+.+.+ ++.+..+..
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK-DVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT-TEEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC-ceEEEEeCc
Confidence            356789999999999999999999999988765 477765543

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=97.31  E-value=0.0014  Score=53.58  Aligned_cols=97  Identities=13%  Similarity=0.219  Sum_probs=67.6

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++++.+.    .+++.++.|....-+......     .+..+.+++.|..++++  .+.+++++|++.+ .|+
T Consensus         3 v~~l~~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~-~Pt   75 (109)
T 2yzu_A            3 PIEVTDQNFDETLG----QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVD--ENPKTAMRYRVMS-IPT   75 (109)
T ss_dssp             CEECCTTTHHHHHH----HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETT--TCHHHHHHTTCCS-SSE
T ss_pred             ceEccHhHHHHHhc----CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECC--CCHhHHHhCCCCc-CCE
Confidence            45678888887774    367777777655444322222     12245557999999987  6889999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +++|+++.. .  ....|..+...|.+|++..
T Consensus        76 ~~~~~~g~~-~--~~~~g~~~~~~l~~~l~~~  104 (109)
T 2yzu_A           76 VILFKDGQP-V--EVLVGAQPKRNYQAKIEKH  104 (109)
T ss_dssp             EEEEETTEE-E--EEEESCCCHHHHHHHHHTT
T ss_pred             EEEEeCCcE-e--eeEeCCCCHHHHHHHHHHH
Confidence            999965322 1  2456777888899998854

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=97.30  E-value=0.0003  Score=61.86  Aligned_cols=105  Identities=14%  Similarity=0.115  Sum_probs=58.3

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCC--c-----hhHHHHHHhhccCCceE--EEEEEccCCCChhHHhHhCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSL--P-----VRLRYLINAFKHRTTIV--FGVIVYDQEDSSSVFQRFKVPG  311 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~--~-----~~~~~~~~a~~~~~~v~--Fg~v~~~~~~~~~l~~k~~i~~  311 (554)
                      +..++++++++++..    +..++++|....  -     -...+...+.++ +++.  |+.++++  .+.+++++|+|.+
T Consensus        19 ~~~l~~~~f~~~i~~----~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d--~~~~la~~~~V~~   91 (142)
T 2es7_A           19 WQPVEASTVDDWIKR----VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLE--QSEAIGDRFNVRR   91 (142)
T ss_dssp             CEECCCC------------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHH--HHHHHHHTTTCCS
T ss_pred             CcccccccHHHHHHh----CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECC--CCHHHHHhcCCCc
Confidence            566788999998853    334555664211  0     111122223355 7788  9999887  6788999999997


Q ss_pred             CCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCccccccc
Q psy16770        312 DKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRIS  356 (554)
Q Consensus       312 ~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt  356 (554)
                       .||+++|+++.. .  ....|..+...|.+||+...-....+++
T Consensus        92 -iPT~~~fk~G~~-v--~~~~G~~~~~~l~~~i~~~l~~~~~~~~  132 (142)
T 2es7_A           92 -FPATLVFTDGKL-R--GALSGIHPWAELLTLMRSIVDTPAAQET  132 (142)
T ss_dssp             -SSEEEEESCC-------CEESCCCHHHHHHHHHHHHC-------
T ss_pred             -CCeEEEEeCCEE-E--EEEeCCCCHHHHHHHHHHHhcccccCCC
Confidence             999999976433 2  2356777888899999865444444433

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=97.29  E-value=0.0018  Score=53.66  Aligned_cols=101  Identities=13%  Similarity=0.143  Sum_probs=67.9

Q ss_pred             CCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCC
Q psy16770        236 LPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVP  310 (554)
Q Consensus       236 ~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~  310 (554)
                      ++.. +..++.+++++.+.   ..+++.++.|....-+......     .+..+.+++.|+.++++  .+.+++++|+|.
T Consensus         5 ~~~~-v~~l~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~v~   78 (115)
T 1thx_A            5 MSKG-VITITDAEFESEVL---KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEID--PNPTTVKKYKVE   78 (115)
T ss_dssp             -CCS-EEECCGGGHHHHTT---TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEEST--TCHHHHHHTTCC
T ss_pred             ccCc-eEEeeccchhhHhh---cCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcC--CCHHHHHHcCCC
Confidence            3444 56678888887663   3567777777554433322222     12245567999999987  688999999999


Q ss_pred             CCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        311 GDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       311 ~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      . .|++++|+++.. .  ....|..+...|.+|++.
T Consensus        79 ~-~Pt~~~~~~G~~-~--~~~~g~~~~~~l~~~l~~  110 (115)
T 1thx_A           79 G-VPALRLVKGEQI-L--DSTEGVISKDKLLSFLDT  110 (115)
T ss_dssp             S-SSEEEEEETTEE-E--EEEESCCCHHHHHHHHHH
T ss_pred             c-eeEEEEEcCCEE-E--EEecCCCCHHHHHHHHHH
Confidence            7 999999965322 1  234567778888888864

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=97.28  E-value=0.0016  Score=53.09  Aligned_cols=98  Identities=10%  Similarity=0.143  Sum_probs=67.8

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH-----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN-----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~-----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++++.+.   ..++++++.|....-+.......     +..+.+++.|+.++++  .+.+++++|+|.+ .|+
T Consensus         4 v~~l~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~-~Pt   77 (107)
T 2i4a_A            4 TLAVSDSSFDQDVL---KASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNID--DNPETPNAYQVRS-IPT   77 (107)
T ss_dssp             EEECCTTTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETT--TCCHHHHHTTCCS-SSE
T ss_pred             eeecchhhhhHHHH---hCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECC--CCHHHHHhcCCCc-cCE
Confidence            55678888876653   35677778776554443322221     1245568999999987  6788999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +++|+++.. .  ....|..+.+.|.+||+.+
T Consensus        78 ~~~~~~G~~-~--~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           78 LMLVRDGKV-I--DKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             EEEEETTEE-E--EEEESCCCHHHHHHHHHHT
T ss_pred             EEEEeCCEE-E--EEecCCCCHHHHHHHHHhc
Confidence            999965322 1  2356777888899998754

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=97.28  E-value=0.00015  Score=60.98  Aligned_cols=56  Identities=27%  Similarity=0.627  Sum_probs=41.0

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc----H----HHHHHhCCcCCCCcceeccCCeEE
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE----Q----GLARRLGVGSQLPQIALLTDGRTS  216 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~----~----~l~~~~~v~~~~Pti~~~~~g~~~  216 (554)
                      ++.|+++||++|+++.+.+++.       ++.+..+|.+..    +    .+.+..|+.+ +|++  |.+|+.+
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~~~~~l~~~~g~~t-vP~i--fi~g~~i   84 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFKRL-------GVQPLVVELDQLGPQGPQLQKVLERLTGQHT-VPNV--FVCGKHI   84 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCS-SCEE--EETTEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCCCeEEEeecCCCChHHHHHHHHHHhCCCC-cCEE--EECCEEE
Confidence            6669999999999998888753       456667777652    2    2556679997 9998  5578543

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.26  E-value=0.0027  Score=54.08  Aligned_cols=98  Identities=14%  Similarity=0.173  Sum_probs=66.4

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCch----hHH-HHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPV----RLR-YLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~----~~~-~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++++.+..   .++++++.|....-+    ... ....+..+.+.+.|+.++++  .+.+++++|+|.. .||
T Consensus        19 v~~l~~~~f~~~~~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~l~~~~~v~~-~Pt   92 (130)
T 2dml_A           19 VIELTPSNFNREVIQ---SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNAD--KHQSLGGQYGVQG-FPT   92 (130)
T ss_dssp             SEECCTTTHHHHTTT---CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETT--TCHHHHHHHTCCS-SSE
T ss_pred             cEECCHHHHHHHHhc---CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCC--CCHHHHHHcCCCc-cCE
Confidence            556788888876542   466777766432211    111 11122245667999999987  6889999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++....  ..+.+..+...|.+|+..
T Consensus        93 ~~~~~~~~~~~--~~~~G~~~~~~l~~~l~~  121 (130)
T 2dml_A           93 IKIFGANKNKP--EDYQGGRTGEAIVDAALS  121 (130)
T ss_dssp             EEEESSCTTSC--EECCSCCSHHHHHHHHHH
T ss_pred             EEEEeCCCCeE--EEeecCCCHHHHHHHHHH
Confidence            99998765422  345677788888888764

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=97.26  E-value=0.00069  Score=61.64  Aligned_cols=40  Identities=30%  Similarity=0.564  Sum_probs=32.7

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEE
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV  186 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~V  186 (554)
                      ..++.+|+|+.-.|+||++++|.+.++.+++.. ++.+..+
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~-~~~~~~~   59 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPE-GAKFQKN   59 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCT-TCEEEEE
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCC-ceEEEEE
Confidence            457899999999999999999999999888765 3555544

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=97.24  E-value=0.00056  Score=56.41  Aligned_cols=71  Identities=20%  Similarity=0.245  Sum_probs=47.1

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-----HHHH----HHhCCcCCCCcceeccCCeEEEEe
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-----QGLA----RRLGVGSQLPQIALLTDGRTSFFK  219 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-----~~l~----~~~~v~~~~Pti~~~~~g~~~~y~  219 (554)
                      .-++.|+++||++|+++.+.+++.       ++.+..+|.+..     .++.    +..|+.+ +|++.+ .+|+   ..
T Consensus        22 ~~v~ly~~~~Cp~C~~ak~~L~~~-------~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~-vP~l~i-~~~~---~i   89 (103)
T 3nzn_A           22 GKVIMYGLSTCVWCKKTKKLLTDL-------GVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVS-FPTTII-NDEK---AI   89 (103)
T ss_dssp             SCEEEEECSSCHHHHHHHHHHHHH-------TBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCC-SCEEEE-TTTE---EE
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHc-------CCCcEEEEeeccCcccHHHHHHHHHHhCCCCc-cCEEEE-CCCE---EE
Confidence            446779999999999999888764       345556666641     2232    3358887 999876 3334   34


Q ss_pred             CCcccHHHHHHHH
Q psy16770        220 EPSFSVQKMVEFF  232 (554)
Q Consensus       220 ~g~~~~~~i~~fl  232 (554)
                      ||. +.+.|.+++
T Consensus        90 gg~-~~~~l~~~L  101 (103)
T 3nzn_A           90 VGF-KEKEIRESL  101 (103)
T ss_dssp             ESC-CHHHHHHHT
T ss_pred             EcC-CHHHHHHHh
Confidence            564 667777654

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=97.24  E-value=0.0021  Score=52.86  Aligned_cols=96  Identities=15%  Similarity=0.214  Sum_probs=67.6

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHh-----hccC---CceEEEEEEccCCCChhHHhHhCCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINA-----FKHR---TTIVFGVIVYDQEDSSSVFQRFKVPGD  312 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a-----~~~~---~~v~Fg~v~~~~~~~~~l~~k~~i~~~  312 (554)
                      +..+|++++++.+.     +++.++.|....-+..+.....     ..+.   ..+.|+.++++  .+.+++++|+|.+ 
T Consensus         7 v~~l~~~~~~~~~~-----~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~l~~~~~v~~-   78 (111)
T 3uvt_A            7 VLALTENNFDDTIA-----EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT--AERNICSKYSVRG-   78 (111)
T ss_dssp             SEECCTTTHHHHHH-----SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETT--TCHHHHHHTTCCS-
T ss_pred             ceEcChhhHHHHhc-----CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEecc--ccHhHHHhcCCCc-
Confidence            56778999999884     5567777755444433322211     1222   47899999887  6889999999997 


Q ss_pred             CceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        313 KDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       313 ~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      .|++++|+++.. .  ....|..+.+.|.+||+.+
T Consensus        79 ~Pt~~~~~~g~~-~--~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           79 YPTLLLFRGGKK-V--SEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             SSEEEEEETTEE-E--EEECSCCSHHHHHHHHHHH
T ss_pred             ccEEEEEeCCcE-E--EeccCCcCHHHHHHHHHhc
Confidence            999999976432 1  3456778888999998753

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=97.23  E-value=0.002  Score=52.49  Aligned_cols=96  Identities=14%  Similarity=0.174  Sum_probs=65.5

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++++++++.+.    .+++.++.|....-+......     .+..+.+.+.|..++++  .+.+++++|+|.+ .|+
T Consensus         2 v~~l~~~~~~~~~~----~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~v~~-~Pt   74 (105)
T 1nsw_A            2 TMTLTDANFQQAIQ----GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVD--ENPETTSQFGIMS-IPT   74 (105)
T ss_dssp             CEEECTTTHHHHHS----SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETT--TCHHHHHHTTCCS-SSE
T ss_pred             ceeccHHhHHHHHh----CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECc--CCHHHHHHcCCcc-ccE
Confidence            44567788886663    467777777654444322222     12245567999999987  6889999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++.. .  ....|..+.+.|.++++.
T Consensus        75 ~~~~~~G~~-~--~~~~G~~~~~~l~~~l~~  102 (105)
T 1nsw_A           75 LILFKGGRP-V--KQLIGYQPKEQLEAQLAD  102 (105)
T ss_dssp             EEEEETTEE-E--EEEESCCCHHHHHHHTTT
T ss_pred             EEEEeCCeE-E--EEEecCCCHHHHHHHHHH
Confidence            999965322 1  235677777888888864

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=97.23  E-value=0.00088  Score=63.67  Aligned_cols=87  Identities=15%  Similarity=0.152  Sum_probs=63.3

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------------------------------cHHHHHH
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------------------------------EQGLARR  197 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------------------------------~~~l~~~  197 (554)
                      .+|+.|+++||+.|....|.+.+++++++..++.+..|.++.                               +..+++.
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~  113 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAIL  113 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHH
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHH
Confidence            456667899999999999999999999987788888887654                               2346777


Q ss_pred             hCCcC-----------CCCcceec-cCCeEEEEe-CC---cccHHHHHHHHHHh
Q psy16770        198 LGVGS-----------QLPQIALL-TDGRTSFFK-EP---SFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~~-----------~~Pti~~~-~~g~~~~y~-~g---~~~~~~i~~fl~~~  235 (554)
                      ||+..           ..|++.++ ++|++.... +.   .++.++|...+...
T Consensus       114 ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l  167 (224)
T 1prx_A          114 LGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL  167 (224)
T ss_dssp             TTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             hCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            77731           15777777 678765443 21   24678888877654

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=97.23  E-value=0.002  Score=52.44  Aligned_cols=96  Identities=16%  Similarity=0.214  Sum_probs=67.7

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++++++++.+     .+++.++.|....-+..+...     .+..+.+.+.|+.++++  .+.+++++|++.+ .|+
T Consensus         5 v~~l~~~~~~~~~-----~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~-~Pt   76 (106)
T 3die_A            5 IVKVTDADFDSKV-----ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVD--ENPSTAAKYEVMS-IPT   76 (106)
T ss_dssp             CEECCTTTHHHHS-----CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETT--TCHHHHHHTTCCS-BSE
T ss_pred             eEECCHHHHHHHh-----cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECC--cCHHHHHhCCCcc-cCE
Confidence            4567888898877     366777777554444332222     12255667999999987  6889999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +++|+++.. .  ....|..+.+.|.++|+..
T Consensus        77 ~~~~~~G~~-~--~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           77 LIVFKDGQP-V--DKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             EEEEETTEE-E--EEEESCCCHHHHHHHHHTT
T ss_pred             EEEEeCCeE-E--EEEeCCCCHHHHHHHHHHh
Confidence            999975322 1  2456777888899988753

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=97.20  E-value=0.0017  Score=54.08  Aligned_cols=100  Identities=13%  Similarity=0.161  Sum_probs=67.1

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCC-------chhHHHHHHhhc-cCCceEEEEEEccCCCChhHHhHhCCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSL-------PVRLRYLINAFK-HRTTIVFGVIVYDQEDSSSVFQRFKVPGD  312 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~-------~~~~~~~~~a~~-~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~  312 (554)
                      +..++.+++++.+.    .++++++.|....       .+.+........ ....+.|+.++++  .+.+++++|+|.+ 
T Consensus         9 v~~l~~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~~~~~~~v~~-   81 (120)
T 1mek_A            9 VLVLRKSNFAEALA----AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT--EESDLAQQYGVRG-   81 (120)
T ss_dssp             EEECCTTTHHHHHH----HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETT--TCCSSHHHHTCCS-
T ss_pred             cEEechhhHHHHHc----cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCC--CCHHHHHHCCCCc-
Confidence            56678889988874    3667777664332       222222222221 1246889999887  5678999999997 


Q ss_pred             CceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCC
Q psy16770        313 KDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNP  348 (554)
Q Consensus       313 ~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~  348 (554)
                      .|++++|+++.. .....+.|..+...|.+|++.+.
T Consensus        82 ~Pt~~~~~~g~~-~~~~~~~g~~~~~~l~~~l~~~~  116 (120)
T 1mek_A           82 YPTIKFFRNGDT-ASPKEYTAGREADDIVNWLKKRT  116 (120)
T ss_dssp             SSEEEEEESSCS-SSCEECCCCSSHHHHHHHHHTTS
T ss_pred             ccEEEEEeCCCc-CCcccccCccCHHHHHHHHHhcc
Confidence            999999976433 11134567788889999998764

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=97.19  E-value=0.0024  Score=55.94  Aligned_cols=96  Identities=14%  Similarity=0.265  Sum_probs=68.3

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++++.+    ..++++++.|....-+..+...     .+..+.+++.|+.++++  .+.+++++|+|.+ .||
T Consensus        40 v~~l~~~~~~~~~----~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~--~~~~l~~~~~v~~-~Pt  112 (148)
T 3p2a_A           40 VINATAETLDKLL----QDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTE--AEPALSTRFRIRS-IPT  112 (148)
T ss_dssp             CEECCTTTHHHHT----TCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETT--TCHHHHHHTTCCS-SSE
T ss_pred             ceecCHHHHHHHH----hcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECc--CCHHHHHHCCCCc-cCE
Confidence            5677888898887    3567777777554433322221     22255678999999987  7889999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++.. .  ..+.|..+.+.|.+||+.
T Consensus       113 ~~~~~~G~~-~--~~~~G~~~~~~l~~~l~~  140 (148)
T 3p2a_A          113 IMLYRNGKM-I--DMLNGAVPKAPFDNWLDE  140 (148)
T ss_dssp             EEEEETTEE-E--EEESSCCCHHHHHHHHHH
T ss_pred             EEEEECCeE-E--EEEeCCCCHHHHHHHHHH
Confidence            999975322 1  246777888889998874

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=97.19  E-value=0.0024  Score=52.28  Aligned_cols=97  Identities=13%  Similarity=0.201  Sum_probs=66.6

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++++.+.   ..+++.++.|....-+..+...     .+..+.+++.|+.++++  .+.+++++|++.+ .|+
T Consensus         4 v~~l~~~~f~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~-~Pt   77 (108)
T 2trx_A            4 IIHLTDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID--QNPGTAPKYGIRG-IPT   77 (108)
T ss_dssp             EEECCTTTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETT--TCTTHHHHTTCCS-SSE
T ss_pred             ceecchhhHHHHHH---hcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECC--CCHHHHHHcCCcc-cCE
Confidence            45678888886653   3567777777654433322222     22245667999999987  6788999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++.. .  ....|..+.+.|.+||+.
T Consensus        78 ~~~~~~G~~-~--~~~~G~~~~~~l~~~l~~  105 (108)
T 2trx_A           78 LLLFKNGEV-A--ATKVGALSKGQLKEFLDA  105 (108)
T ss_dssp             EEEEETTEE-E--EEEESCCCHHHHHHHHHH
T ss_pred             EEEEeCCEE-E--EEEecCCCHHHHHHHHHH
Confidence            999965322 1  245677788888888864

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=97.19  E-value=0.0021  Score=51.93  Aligned_cols=94  Identities=18%  Similarity=0.292  Sum_probs=64.6

Q ss_pred             ccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH-----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        242 VPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN-----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~-----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      ..++.+++++.+.    .+++.++.|....-+.......     +..+.+ +.|+.++++  .+.+++++|++.+ .|++
T Consensus         2 ~~l~~~~~~~~~~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~--~~~~~~~~~~v~~-~Pt~   73 (104)
T 2e0q_A            2 IHLDSKNFDSFLA----SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSD--ENPDIAARYGVMS-LPTV   73 (104)
T ss_dssp             EECCTTTHHHHHH----HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETT--TCHHHHHHTTCCS-SCEE
T ss_pred             eecCHHHHHHHHh----cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECC--CCHHHHHhCCccc-cCEE
Confidence            4567888988884    3667777776544443222221     123444 999999987  6889999999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      ++|+++.. .  ....|..+...|.+|++.
T Consensus        74 ~~~~~g~~-~--~~~~g~~~~~~l~~~l~~  100 (104)
T 2e0q_A           74 IFFKDGEP-V--DEIIGAVPREEIEIRIKN  100 (104)
T ss_dssp             EEEETTEE-E--EEEESCCCHHHHHHHHHH
T ss_pred             EEEECCeE-h--hhccCCCCHHHHHHHHHH
Confidence            99965322 1  245677788888888864

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=97.18  E-value=0.0021  Score=54.03  Aligned_cols=98  Identities=11%  Similarity=0.074  Sum_probs=67.2

Q ss_pred             ccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        240 LIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       240 ~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      .+..++++++++.+..   .++++++.|....-+..+...     .+..+.+.+.|..++++  .+.+++++|+|.+ .|
T Consensus        14 ~~~~~~~~~f~~~v~~---~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d--~~~~l~~~~~v~~-~P   87 (119)
T 1w4v_A           14 TFNIQDGPDFQDRVVN---SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDID--DHTDLAIEYEVSA-VP   87 (119)
T ss_dssp             EEECCSHHHHHHHTTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETT--TTHHHHHHTTCCS-SS
T ss_pred             EEEecChhhHHHHHHc---CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCC--CCHHHHHHcCCCc-cc
Confidence            3667788888876643   466777777654444332222     12245567999999987  6788999999997 99


Q ss_pred             eEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        315 SLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      ++++|+++.. .  ....|..+...|.+||+.
T Consensus        88 t~~~~~~G~~-~--~~~~G~~~~~~l~~~l~~  116 (119)
T 1w4v_A           88 TVLAMKNGDV-V--DKFVGIKDEDQLEAFLKK  116 (119)
T ss_dssp             EEEEEETTEE-E--EEEESCCCHHHHHHHHHH
T ss_pred             EEEEEeCCcE-E--EEEcCCCCHHHHHHHHHH
Confidence            9999965322 1  235577788888888864

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.18  E-value=0.0024  Score=54.48  Aligned_cols=98  Identities=11%  Similarity=0.112  Sum_probs=67.2

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccC----CceEEEEEEccCCCChhHHhHhCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHR----TTIVFGVIVYDQEDSSSVFQRFKVPG  311 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~----~~v~Fg~v~~~~~~~~~l~~k~~i~~  311 (554)
                      +..++++++++.+..   .++++++.|....-+..+..     ..+..+.    +.+.|+.++++  .+.+++++|+|..
T Consensus         9 v~~l~~~~~~~~~~~---~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~l~~~~~v~~   83 (133)
T 1x5d_A            9 VIELTDDSFDKNVLD---SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDAT--VNQVLASRYGIRG   83 (133)
T ss_dssp             CEECCTTHHHHHTTT---SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETT--TCCHHHHHHTCCS
T ss_pred             CEEcCHhhHHHHHhc---CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECC--CCHHHHHhCCCCe
Confidence            567788888887643   46777777754433322211     1111333    67999999987  6789999999997


Q ss_pred             CCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        312 DKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       312 ~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                       .|++++|+++.   ....+.+..+...|.+|+...
T Consensus        84 -~Pt~~~~~~g~---~~~~~~G~~~~~~l~~~l~~~  115 (133)
T 1x5d_A           84 -FPTIKIFQKGE---SPVDYDGGRTRSDIVSRALDL  115 (133)
T ss_dssp             -SSEEEEEETTE---EEEEECSCCSHHHHHHHHHHH
T ss_pred             -eCeEEEEeCCC---ceEEecCCCCHHHHHHHHHHH
Confidence             99999998733   123466777888888888653

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=97.16  E-value=0.00012  Score=66.51  Aligned_cols=57  Identities=14%  Similarity=0.276  Sum_probs=45.1

Q ss_pred             CcEEEEEEcccccccccc-hHHHHHHHHHhCCCCEE-EEEEEecC---cHHHHHHhCCc-CCCC
Q psy16770        148 TPHLILFYSDWCFACLQV-EPIFKKLMDELSPLGVG-FFTVHVHN---EQGLARRLGVG-SQLP  205 (554)
Q Consensus       148 ~~~lV~Fya~wC~~C~~l-~p~~~~~a~~l~~~~v~-~~~Vd~~~---~~~l~~~~~v~-~~~P  205 (554)
                      +++|+.|++.||+.|... .|.+.+++++++..|+. +..|+.+.   ....++++++. . ||
T Consensus        45 ~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~-fp  107 (171)
T 2pwj_A           45 KVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDA-IE  107 (171)
T ss_dssp             EEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTT-SE
T ss_pred             CEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCc-eE
Confidence            477888999999999998 99999999998766788 88888765   34456677763 4 55

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=97.16  E-value=0.0018  Score=53.74  Aligned_cols=99  Identities=14%  Similarity=0.075  Sum_probs=67.7

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchh----HHH-HHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVR----LRY-LINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~----~~~-~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++++++++.+     .++++++.|....-+.    ... ...+..+.+.+.|+.++++  .+.+++++|+|.+ .|+
T Consensus         3 v~~l~~~~~~~~~-----~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~-~Pt   74 (112)
T 2voc_A            3 IVKATDQSFSAET-----SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVD--ENQETAGKYGVMS-IPT   74 (112)
T ss_dssp             CEECCTTTHHHHH-----SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETT--TCCSHHHHTTCCS-BSE
T ss_pred             eEEecHHHHHHHh-----CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECC--CCHHHHHHcCCCc-ccE
Confidence            3457888888877     2567777664432221    111 1122245568999999987  6788999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYL  350 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~  350 (554)
                      +++|+++.. .  ....|..+.+.|.+|++.+.-+
T Consensus        75 ~~~~~~G~~-~--~~~~G~~~~~~l~~~l~~~~~~  106 (112)
T 2voc_A           75 LLVLKDGEV-V--ETSVGFKPKEALQELVNKHLLE  106 (112)
T ss_dssp             EEEEETTEE-E--EEEESCCCHHHHHHHHHTTSCS
T ss_pred             EEEEeCCEE-E--EEEeCCCCHHHHHHHHHHHHHh
Confidence            999965322 1  3456788889999999876443

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=97.15  E-value=0.0016  Score=60.94  Aligned_cols=106  Identities=16%  Similarity=0.119  Sum_probs=72.1

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.++++..+.    .++++++.|....-++.....     .+..+.+.+.|+.++++  .+.+++++|+|.+ .||
T Consensus        99 v~~l~~~~f~~~~~----~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~-~Pt  171 (210)
T 3apq_A           99 IITLERREFDAAVN----SGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCG--DDRMLCRMKGVNS-YPS  171 (210)
T ss_dssp             SEECCHHHHHHHHH----HSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETT--TCHHHHHHTTCCS-SSE
T ss_pred             eEEecHHHHHHHHc----cCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECC--ccHHHHHHcCCCc-CCe
Confidence            55677888888773    356677766544333322221     22245667999999987  6889999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCccccccc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLPRIS  356 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt  356 (554)
                      +++|+++.. .  ....|..+...|.+||+...-+.+.+++
T Consensus       172 ~~~~~~G~~-~--~~~~G~~~~~~l~~~i~~~l~~~~~~i~  209 (210)
T 3apq_A          172 LFIFRSGMA-A--VKYNGDRSKESLVAFAMQHVRSTVTELS  209 (210)
T ss_dssp             EEEECTTSC-C--EECCSCCCHHHHHHHHHHHHHCCSSCC-
T ss_pred             EEEEECCCc-e--eEecCCCCHHHHHHHHHHhCcccceecC
Confidence            999965433 2  3466778888999999876444444443

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=97.12  E-value=0.0026  Score=51.65  Aligned_cols=97  Identities=12%  Similarity=0.192  Sum_probs=65.7

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH-----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN-----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~-----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++++.+..   .+++.++.|....-+.......     +..+.+.+.|..++++  .+.+++++|++.+ .|+
T Consensus         2 v~~~~~~~~~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~-~Pt   75 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLE---SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTD--EAPGIATQYNIRS-IPT   75 (105)
T ss_dssp             CEECCTTTHHHHTTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT--TCHHHHHHTTCCS-SSE
T ss_pred             ceechhhhHHHHHhc---CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCc--chHHHHHhCCCCc-ccE
Confidence            345677888876643   4677777776554443322221     2245567999999887  6789999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++.. .  ....|..+.+.+.++|+.
T Consensus        76 ~~~~~~g~~-~--~~~~G~~~~~~l~~~l~~  103 (105)
T 1fb6_A           76 VLFFKNGER-K--ESIIGAVPKSTLTDSIEK  103 (105)
T ss_dssp             EEEEETTEE-E--EEEEECCCHHHHHHHHHH
T ss_pred             EEEEeCCeE-E--EEEecCCCHHHHHHHHHh
Confidence            999975322 1  234566777888888764

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=97.09  E-value=0.0026  Score=51.94  Aligned_cols=97  Identities=11%  Similarity=0.133  Sum_probs=65.3

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++++++++.+..   .+++.++.|....-+......     .+..+.+.+.|..++++  .+.+++++|+|.+ .||
T Consensus         3 v~~l~~~~~~~~~~~---~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~-~Pt   76 (107)
T 1dby_A            3 AGAVNDDTFKNVVLE---SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTD--ESPNVASEYGIRS-IPT   76 (107)
T ss_dssp             CEEECHHHHHHHTTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT--TCHHHHHHHTCCS-SCE
T ss_pred             cEeccHHHHHHHHhc---CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECC--CCHHHHHHCCCCc-CCE
Confidence            345677788776642   467777777654444322222     12245667999999887  6889999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++.. .  ....|..+.+.+.++|+.
T Consensus        77 ~~~~~~G~~-~--~~~~G~~~~~~l~~~l~~  104 (107)
T 1dby_A           77 IMVFKGGKK-C--ETIIGAVPKATIVQTVEK  104 (107)
T ss_dssp             EEEESSSSE-E--EEEESCCCHHHHHHHHHH
T ss_pred             EEEEeCCEE-E--EEEeCCCCHHHHHHHHHH
Confidence            999964322 1  245677777888888764

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.09  E-value=0.0028  Score=54.74  Aligned_cols=96  Identities=18%  Similarity=0.183  Sum_probs=66.5

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCc-------hhHHHHHHhhcc-CCceEEEEEEccCCCChhHHhHhCCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLP-------VRLRYLINAFKH-RTTIVFGVIVYDQEDSSSVFQRFKVPGD  312 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~-------~~~~~~~~a~~~-~~~v~Fg~v~~~~~~~~~l~~k~~i~~~  312 (554)
                      +..++.+++++.+.    .++++++.|....-       +.+......... ...+.|+.++++  .+.+++++|+|.. 
T Consensus        19 v~~l~~~~~~~~~~----~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~--~~~~~~~~~~v~~-   91 (140)
T 2dj1_A           19 VWVLNDGNFDNFVA----DKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT--SASMLASKFDVSG-   91 (140)
T ss_dssp             EEECCTTTHHHHHT----TCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTT--TCHHHHHHTTCCS-
T ss_pred             CEEcChHhHHHHHh----cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCc--ccHHHHHHCCCCc-
Confidence            55678889988874    46777777744322       223222222211 124899999887  6789999999997 


Q ss_pred             CceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        313 KDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       313 ~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      .|++++|+++.  .  ..+.+..+.+.|.+||+..
T Consensus        92 ~Pt~~~~~~G~--~--~~~~g~~~~~~l~~~l~~~  122 (140)
T 2dj1_A           92 YPTIKILKKGQ--A--VDYDGSRTQEEIVAKVREV  122 (140)
T ss_dssp             SSEEEEEETTE--E--EECCSCCCHHHHHHHHHHH
T ss_pred             cCeEEEEECCc--E--EEcCCCCCHHHHHHHHHHh
Confidence            99999997643  2  3456778888999999765

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=97.09  E-value=0.00067  Score=64.93  Aligned_cols=87  Identities=13%  Similarity=0.165  Sum_probs=63.1

Q ss_pred             CcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------------------------cHHHHHH
Q psy16770        148 TPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------------------------EQGLARR  197 (554)
Q Consensus       148 ~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------------------------~~~l~~~  197 (554)
                      +++++.|| ++||+.|....|.+.++.++++..++.+..|.++.                             +..+++.
T Consensus        30 ~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~  109 (233)
T 2v2g_A           30 SWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVK  109 (233)
T ss_dssp             SEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHH
T ss_pred             CeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHHH
Confidence            37788888 99999999999999999998876678888887654                             1246667


Q ss_pred             hCCc------------CCCCcceec-cCCeEEEEe-CC---cccHHHHHHHHHHh
Q psy16770        198 LGVG------------SQLPQIALL-TDGRTSFFK-EP---SFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~------------~~~Pti~~~-~~g~~~~y~-~g---~~~~~~i~~fl~~~  235 (554)
                      ||+.            . .|++.++ ++|++.... +.   .++.++|+..+...
T Consensus       110 ygv~~~~~~~~~g~~~~-~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~L  163 (233)
T 2v2g_A          110 LGMVDPDERTSTGMPLT-CRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSL  163 (233)
T ss_dssp             TTCEEEEEECTTCCEEE-CEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             hCCcCcccccCCCcccc-cceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            7764            3 6777777 678764332 11   24678888877654

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=97.08  E-value=0.0038  Score=52.24  Aligned_cols=96  Identities=16%  Similarity=0.114  Sum_probs=65.4

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      ....+.+++++.++..  .++++++.|....-++.+...     .+..+.+ +.|..++++  .+.+++++|+|.+ .|+
T Consensus        14 ~~~~t~~~f~~~l~~~--~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d--~~~~l~~~~~v~~-~Pt   87 (116)
T 3qfa_C           14 KQIESKTAFQEALDAA--GDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVD--DCQDVASECEVKS-MPT   87 (116)
T ss_dssp             BCCCCHHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETT--TTHHHHHHTTCCS-SSE
T ss_pred             cCCCCHHHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECC--CCHHHHHHcCCcc-ccE
Confidence            4566788999988642  577777777554433332222     1223334 999999987  6889999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++.. .  ....|. +...|.++|+.
T Consensus        88 ~~~~~~G~~-~--~~~~G~-~~~~l~~~l~~  114 (116)
T 3qfa_C           88 FQFFKKGQK-V--GEFSGA-NKEKLEATINE  114 (116)
T ss_dssp             EEEESSSSE-E--EEEESC-CHHHHHHHHHH
T ss_pred             EEEEeCCeE-E--EEEcCC-CHHHHHHHHHH
Confidence            999965322 1  234455 78888888864

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=97.07  E-value=0.0043  Score=53.66  Aligned_cols=101  Identities=10%  Similarity=0.143  Sum_probs=70.1

Q ss_pred             cccCCcccHHHHHhhhhc--------CCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHh
Q psy16770        241 IVPLSATNVDAFLDNWRE--------DNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRF  307 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~--------~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~  307 (554)
                      +..++.++++..+....+        .++++++.|....-+..+...     .+..+.+.+.|..++++  .+.+++++|
T Consensus        24 v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~  101 (141)
T 3hxs_A           24 TIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVD--KEPELARDF  101 (141)
T ss_dssp             CEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETT--TCHHHHHHT
T ss_pred             cccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECC--CCHHHHHHc
Confidence            566788888877753200        367778877554433322221     22255678999999987  688999999


Q ss_pred             CCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        308 KVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       308 ~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +|.+ .|++++|.++.. .  ....|..+...|.+||+..
T Consensus       102 ~v~~-~Pt~~~~~~~g~-~--~~~~G~~~~~~l~~~l~~~  137 (141)
T 3hxs_A          102 GIQS-IPTIWFVPMKGE-P--QVNMGALSKEQLKGYIDKV  137 (141)
T ss_dssp             TCCS-SSEEEEECSSSC-C--EEEESCCCHHHHHHHHHHT
T ss_pred             CCCC-cCEEEEEeCCCC-E--EEEeCCCCHHHHHHHHHHH
Confidence            9997 999999966444 2  2567888888999998754

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=97.06  E-value=0.0008  Score=63.76  Aligned_cols=87  Identities=9%  Similarity=0.148  Sum_probs=63.0

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHHhCC
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARRLGV  200 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~~~v  200 (554)
                      .+|+.|+++||+.|....|.+.++.++++..++.+..|.++.                            +..+++.||+
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv  113 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKI  113 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTC
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCC
Confidence            445556899999999999999999999987788988887753                            2357778887


Q ss_pred             c--------C---CCCcceec-cCCeEEEEe-C---CcccHHHHHHHHHHh
Q psy16770        201 G--------S---QLPQIALL-TDGRTSFFK-E---PSFSVQKMVEFFRLK  235 (554)
Q Consensus       201 ~--------~---~~Pti~~~-~~g~~~~y~-~---g~~~~~~i~~fl~~~  235 (554)
                      .        +   ..|++.++ ++|++.... +   ..++.++|...+...
T Consensus       114 ~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~l  164 (220)
T 1xcc_A          114 MDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  164 (220)
T ss_dssp             EEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            3        1   15777777 678764433 1   124778888877654

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=97.04  E-value=0.0032  Score=52.93  Aligned_cols=99  Identities=9%  Similarity=0.059  Sum_probs=64.8

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++.+.+.   ..++++++.|....-+..+...     .+..+.+.+.|+.++++  .+.+++++|+|.+ .||
T Consensus         5 v~~l~~~~f~~~~~---~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~-~Pt   78 (122)
T 3aps_A            5 SIDLTPQTFNEKVL---QGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQ--AYPQTCQKAGIKA-YPS   78 (122)
T ss_dssp             SEECCHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETT--TCHHHHHHTTCCS-SSE
T ss_pred             hhcCCHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCc--CCHHHHHHcCCCc-cce
Confidence            56678888855442   3467777777654433322221     12245568999999987  6889999999997 999


Q ss_pred             EEEEeCCCCCCCceee--cCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASIT--MNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~--~~~~~~~~l~~fi~~  346 (554)
                      +++|+++.. .....-  .+..+.+.|.+|++.
T Consensus        79 ~~~~~~~~~-~~~~~g~~~~~~~~~~l~~~l~~  110 (122)
T 3aps_A           79 VKLYQYERA-KKSIWEEQINSRDAKTIAALIYG  110 (122)
T ss_dssp             EEEEEEEGG-GTEEEEEEECCSCHHHHHHHHHH
T ss_pred             EEEEeCCCc-cceeeccccCcCCHHHHHHHHHH
Confidence            999976544 211111  134678888888864

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=97.04  E-value=0.0019  Score=56.22  Aligned_cols=99  Identities=13%  Similarity=0.159  Sum_probs=68.0

Q ss_pred             ccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        240 LIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       240 ~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      .+..++++++.+.+.   ..++++++.|....-+..+...     .+..+.+.+.|+.++++  .+.+++++|+|.+ .|
T Consensus         7 ~v~~l~~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~-~P   80 (140)
T 3hz4_A            7 SIIEFEDMTWSQQVE---DSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIA--TNPWTAEKYGVQG-TP   80 (140)
T ss_dssp             TEEEECHHHHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETT--TCHHHHHHHTCCE-ES
T ss_pred             ceEEcchHhHHHHHH---hCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC--cCHhHHHHCCCCc-CC
Confidence            366778888874443   3477777777554433322221     22255667999999987  6889999999997 99


Q ss_pred             eEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        315 SLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      |+++|+++.. .  ..+.|..+...|.+||+..
T Consensus        81 t~~~~~~G~~-~--~~~~G~~~~~~l~~~l~~~  110 (140)
T 3hz4_A           81 TFKFFCHGRP-V--WEQVGQIYPSILKNAVRDM  110 (140)
T ss_dssp             EEEEEETTEE-E--EEEESSCCHHHHHHHHHHH
T ss_pred             EEEEEeCCcE-E--EEEcCCCCHHHHHHHHHHH
Confidence            9999976432 1  2456777888888888743

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=97.03  E-value=0.0035  Score=51.74  Aligned_cols=97  Identities=9%  Similarity=0.087  Sum_probs=65.8

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++++++.+.+.   ..++++++.|....-+..+...     .+..+.+.+.|..++++  .+.+++++|+|.+ .||
T Consensus         7 v~~l~~~~~~~~~~---~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~-~Pt   80 (112)
T 1t00_A            7 LKHVTDDSFEQDVL---KNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNID--ENPGTAAKYGVMS-IPT   80 (112)
T ss_dssp             CEEECTTTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT--TCHHHHHHTTCCS-SSE
T ss_pred             EEecchhhHHHHHh---hCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcC--CCHHHHHhCCCCc-ccE
Confidence            45667888876553   2467777777654433322221     22245567999999987  6889999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++.. .  ....|..+.+.|.++|+.
T Consensus        81 ~~~~~~G~~-~--~~~~G~~~~~~l~~~l~~  108 (112)
T 1t00_A           81 LNVYQGGEV-A--KTIVGAKPKAAIVRDLED  108 (112)
T ss_dssp             EEEEETTEE-E--EEEESCCCHHHHHHHTHH
T ss_pred             EEEEeCCEE-E--EEEeCCCCHHHHHHHHHH
Confidence            999975422 1  235677777888888764

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=97.01  E-value=0.0033  Score=51.82  Aligned_cols=97  Identities=12%  Similarity=0.116  Sum_probs=63.8

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEE
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLL  317 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlv  317 (554)
                      +.+.+++++.+......+++.++.|....-+......     .+..+.+.+.|..++++  .+.+++++|+|.+ .||++
T Consensus         7 i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~-~Pt~~   83 (112)
T 1ep7_A            7 IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVD--AVAAVAEAAGITA-MPTFH   83 (112)
T ss_dssp             ECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TTHHHHHHHTCCB-SSEEE
T ss_pred             ecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECC--chHHHHHHcCCCc-ccEEE
Confidence            3366888888864212267777777654433322221     12245558999999987  6889999999997 99999


Q ss_pred             EEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        318 IFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       318 vfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +|+++..  . ....|. +...|.+||+.
T Consensus        84 ~~~~G~~--~-~~~~G~-~~~~l~~~l~~  108 (112)
T 1ep7_A           84 VYKDGVK--A-DDLVGA-SQDKLKALVAK  108 (112)
T ss_dssp             EEETTEE--E-EEEESC-CHHHHHHHHHH
T ss_pred             EEECCeE--E-EEEcCC-CHHHHHHHHHH
Confidence            9975322  1 233455 77788888864

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=97.01  E-value=0.0041  Score=52.00  Aligned_cols=98  Identities=12%  Similarity=0.118  Sum_probs=67.4

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++.+.+.   ..++++++.|....-+......     .+..+.+.+.|+.++++  .+.+++++|+|.+ .|+
T Consensus        14 v~~l~~~~~~~~~~---~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~i~~-~Pt   87 (121)
T 2i1u_A           14 TIKVTDASFATDVL---SSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVD--TNPETARNFQVVS-IPT   87 (121)
T ss_dssp             SEECCTTTHHHHTT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT--TCHHHHHHTTCCS-SSE
T ss_pred             ceecCHHHHHHHHH---hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC--CCHHHHHhcCCCc-CCE
Confidence            55678888876553   2467777777654443322222     12245567999999987  6889999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +++|+++..   .....|..+.+.|.+||+..
T Consensus        88 ~~~~~~g~~---~~~~~G~~~~~~l~~~l~~~  116 (121)
T 2i1u_A           88 LILFKDGQP---VKRIVGAKGKAALLRELSDV  116 (121)
T ss_dssp             EEEEETTEE---EEEEESCCCHHHHHHHTCSC
T ss_pred             EEEEECCEE---EEEecCCCCHHHHHHHHHHH
Confidence            999975322   12456777888899988754

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=97.01  E-value=0.0038  Score=52.43  Aligned_cols=101  Identities=18%  Similarity=0.146  Sum_probs=67.1

Q ss_pred             CCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH-----hhccCCceEEEEEEccCCCChhHHhHhCCCCC
Q psy16770        238 YKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN-----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGD  312 (554)
Q Consensus       238 ~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~-----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~  312 (554)
                      ...+..++.+++++.+......++++++.|....-+.......     +..+.+ +.|..++++  .+.+++++|+|.+ 
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~--~~~~~~~~~~v~~-   87 (122)
T 2vlu_A           12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVD--ELKPIAEQFSVEA-   87 (122)
T ss_dssp             CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETT--TCHHHHHHTTCCS-
T ss_pred             CcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECC--CCHHHHHHcCCCc-
Confidence            3446677888888888642235778888776554443322221     123444 999999987  6889999999997 


Q ss_pred             CceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        313 KDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       313 ~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      .||+++|+++.. .  ....|.. .+.|.+||+.
T Consensus        88 ~Pt~~~~~~G~~-~--~~~~G~~-~~~l~~~l~~  117 (122)
T 2vlu_A           88 MPTFLFMKEGDV-K--DRVVGAI-KEELTAKVGL  117 (122)
T ss_dssp             SSEEEEEETTEE-E--EEEESSC-HHHHHHHHHH
T ss_pred             ccEEEEEeCCEE-E--EEEeCcC-HHHHHHHHHH
Confidence            999999975432 1  2345555 7788888864

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=97.01  E-value=0.0049  Score=50.06  Aligned_cols=96  Identities=10%  Similarity=0.156  Sum_probs=64.3

Q ss_pred             ccCCc-ccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        242 VPLSA-TNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       242 ~~~t~-~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      ..+++ +++++.+..  ..+++.++.|....-+......     .+..+.+.+.|..++++  .+.+++++|++.+ .|+
T Consensus         3 ~~l~~~~~~~~~l~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~-~Pt   77 (106)
T 1xwb_A            3 YQVKDKADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVD--ECEDIAMEYNISS-MPT   77 (106)
T ss_dssp             EECCSHHHHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETT--TCHHHHHHTTCCS-SSE
T ss_pred             eecCCHHHHHHHHHh--cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEecc--chHHHHHHcCCCc-ccE
Confidence            34555 788888864  2577777777655444322221     12245578999999987  6889999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++..  . ....| .+.+.|.++|+.
T Consensus        78 ~~~~~~G~~--~-~~~~g-~~~~~l~~~i~~  104 (106)
T 1xwb_A           78 FVFLKNGVK--V-EEFAG-ANAKRLEDVIKA  104 (106)
T ss_dssp             EEEEETTEE--E-EEEES-CCHHHHHHHHHH
T ss_pred             EEEEcCCcE--E-EEEcC-CCHHHHHHHHHH
Confidence            999975432  1 23345 567778888864

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.97  E-value=0.005  Score=52.09  Aligned_cols=100  Identities=8%  Similarity=0.071  Sum_probs=67.0

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCC-ceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRT-TIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~-~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      +..++++++++.+.     .+ +++.|....-+..+...     .+..+.+ .+.|+.++++  .+.+++++|+|.. .|
T Consensus         9 v~~l~~~~f~~~~~-----~~-vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~--~~~~~~~~~~v~~-~P   79 (126)
T 1x5e_A            9 VRVITDENWRELLE-----GD-WMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVT--EQPGLSGRFIINA-LP   79 (126)
T ss_dssp             EEECCTTTHHHHTS-----SE-EEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETT--TCHHHHHHTTCCS-SS
T ss_pred             cEEecHHHHHHHhC-----CC-EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECc--CCHHHHHHcCCcc-cC
Confidence            56678899988763     22 45555433333222211     1113333 7999999987  6888999999997 99


Q ss_pred             eEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcccc
Q psy16770        315 SLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTLP  353 (554)
Q Consensus       315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~  353 (554)
                      |+++|+++.  .  ..+.+..+.+.|.+||+......+.
T Consensus        80 t~~~~~~G~--~--~~~~G~~~~~~l~~~l~~~~~~~~~  114 (126)
T 1x5e_A           80 TIYHCKDGE--F--RRYQGPRTKKDFINFISDKEWKSIE  114 (126)
T ss_dssp             EEEEEETTE--E--EECCSCCCHHHHHHHHHTCGGGGSC
T ss_pred             EEEEEeCCe--E--EEeecCCCHHHHHHHHHHHhhccCC
Confidence            999996543  2  3467778889999999877544443

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=96.95  E-value=0.00075  Score=56.31  Aligned_cols=66  Identities=18%  Similarity=0.224  Sum_probs=46.0

Q ss_pred             ccccccccCCCCCCcEEEEEEc-----ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH----HHHHhCCcCCCC
Q psy16770        135 WNFEKNYIPKSYTTPHLILFYS-----DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG----LARRLGVGSQLP  205 (554)
Q Consensus       135 ~~F~~~v~~~~~~~~~lV~Fya-----~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~----l~~~~~v~~~~P  205 (554)
                      +.+++.|.   .+ . ++.|+.     +||++|+++.+.+++.       ++.+..+|.+.++.    +.+..|..+ +|
T Consensus         6 ~~~~~~i~---~~-~-vvvy~~g~~~~~~Cp~C~~ak~~L~~~-------~i~~~~vdi~~~~~~~~~l~~~~g~~~-vP   72 (109)
T 1wik_A            6 SGLKVLTN---KA-S-VMLFMKGNKQEAKCGFSKQILEILNST-------GVEYETFDILEDEEVRQGLKTFSNWPT-YP   72 (109)
T ss_dssp             CCHHHHHT---TS-S-EEEEESSTTTCCCSSTHHHHHHHHHHT-------CSCEEEEESSSCHHHHHHHHHHHSCCS-SC
T ss_pred             HHHHHHhc---cC-C-EEEEEecCCCCCCCchHHHHHHHHHHc-------CCCeEEEECCCCHHHHHHHHHHhCCCC-CC
Confidence            34555562   22 3 445777     9999999888777642       57889999998764    445668886 99


Q ss_pred             cceeccCCeE
Q psy16770        206 QIALLTDGRT  215 (554)
Q Consensus       206 ti~~~~~g~~  215 (554)
                      ++  |.+|+.
T Consensus        73 ~i--fi~g~~   80 (109)
T 1wik_A           73 QL--YVRGDL   80 (109)
T ss_dssp             EE--ECSSSE
T ss_pred             EE--EECCEE
Confidence            74  567864

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=96.94  E-value=0.0033  Score=55.82  Aligned_cols=96  Identities=11%  Similarity=0.141  Sum_probs=66.0

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++++++++.+    ..++++++.|....-++.+...     .+..+.+.+.|+.++++  .+.+++++|+|.+ .||
T Consensus        49 ~~~l~~~~f~~~~----~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~--~~~~l~~~~~i~~-~Pt  121 (155)
T 2ppt_A           49 VAGIDPAILARAE----RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQ--AHPAVAGRHRIQG-IPA  121 (155)
T ss_dssp             EEECCHHHHHHHT----TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETT--TSTHHHHHTTCCS-SSE
T ss_pred             CccCCHHHHHHHH----hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCC--ccHHHHHHcCCCc-CCE
Confidence            3456777777776    2466777777544433322221     22245667999999987  6789999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++.. .  ....|..+...|.+||+.
T Consensus       122 ~~~~~~G~~-~--~~~~G~~~~~~l~~~l~~  149 (155)
T 2ppt_A          122 FILFHKGRE-L--ARAAGARPASELVGFVRG  149 (155)
T ss_dssp             EEEEETTEE-E--EEEESCCCHHHHHHHHHH
T ss_pred             EEEEeCCeE-E--EEecCCCCHHHHHHHHHH
Confidence            999975322 1  235677788889999875

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=96.93  E-value=0.005  Score=53.06  Aligned_cols=101  Identities=15%  Similarity=0.186  Sum_probs=67.7

Q ss_pred             cccCCcccHHHHHhhhh--------cCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHh
Q psy16770        241 IVPLSATNVDAFLDNWR--------EDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRF  307 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~--------~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~  307 (554)
                      +..++++++.+.+....        ..++++++.|....-+..+...     .+..+.+.+.|+.++++  .+.+++++|
T Consensus        11 v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~--~~~~l~~~~   88 (136)
T 2l5l_A           11 VIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTE--KEQELAGAF   88 (136)
T ss_dssp             EEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETT--TCHHHHHHT
T ss_pred             eEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCC--CCHHHHHHc
Confidence            45567777777664210        1356777777554433322221     12245667999999987  678999999


Q ss_pred             CCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        308 KVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       308 ~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +|.+ .|++++|..+.. .  ....+..+.+.|.+||+..
T Consensus        89 ~v~~-~Pt~~~~~~~G~-~--~~~~G~~~~~~l~~~l~~~  124 (136)
T 2l5l_A           89 GIRS-IPSILFIPMEGK-P--EMAQGAMPKASFKKAIDEF  124 (136)
T ss_dssp             TCCS-SCEEEEECSSSC-C--EEEESCCCHHHHHHHHHHH
T ss_pred             CCCC-CCEEEEECCCCc-E--EEEeCCCCHHHHHHHHHHH
Confidence            9997 999999944333 2  2356788889999999765

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.91  E-value=0.0032  Score=57.39  Aligned_cols=90  Identities=8%  Similarity=0.031  Sum_probs=65.2

Q ss_pred             CCCCCcEEEEEEcccccccccchHH-H--HHHHHHhCCCCEEEEEEEecCcH---------------HHHHH---hCCcC
Q psy16770        144 KSYTTPHLILFYSDWCFACLQVEPI-F--KKLMDELSPLGVGFFTVHVHNEQ---------------GLARR---LGVGS  202 (554)
Q Consensus       144 ~~~~~~~lV~Fya~wC~~C~~l~p~-~--~~~a~~l~~~~v~~~~Vd~~~~~---------------~l~~~---~~v~~  202 (554)
                      +...++.+|.+++|||..|..+... |  +++.+-++. ++.+...|.+...               .++..   +++.+
T Consensus        52 k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~-nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~  130 (178)
T 2ec4_A           52 ARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ-NFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQ  130 (178)
T ss_dssp             TTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH-TEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTT
T ss_pred             hhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc-CEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCC
Confidence            3578899999999999999987632 1  234455544 4889999988765               34444   89997


Q ss_pred             CCCcceecc-C---CeEEEEeCCcccHHHHHHHHHHh
Q psy16770        203 QLPQIALLT-D---GRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       203 ~~Pti~~~~-~---g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                       ||++.++. .   ++.+....|..+++++++.+...
T Consensus       131 -~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~  166 (178)
T 2ec4_A          131 -FPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAA  166 (178)
T ss_dssp             -CSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHH
T ss_pred             -CCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence             99999982 2   24556666777889988877644

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=96.90  E-value=0.0023  Score=52.41  Aligned_cols=93  Identities=12%  Similarity=0.153  Sum_probs=52.7

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEe
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFK  320 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk  320 (554)
                      |.+++++.+    ..++++++.|....-++.+...    ..+...+++.|+.++++  .+.+++++|+|.+ .||+++|+
T Consensus         7 ~~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~--~~~~l~~~~~v~~-~Pt~~~~~   79 (105)
T 4euy_A            7 TIEELATYI----EEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQ--DMQEIAGRYAVFT-GPTVLLFY   79 (105)
T ss_dssp             ---CCSSST----TCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEEC--CC---------CC-CCEEEEEE
T ss_pred             CHHHHHHHH----hcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECC--CCHHHHHhcCCCC-CCEEEEEe
Confidence            456666666    2467777777554443332222    11222257999999987  6889999999997 99999998


Q ss_pred             CCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        321 EDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       321 ~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      ++.. .  ....|..+...|.++|+..
T Consensus        80 ~G~~-~--~~~~g~~~~~~l~~~l~~~  103 (105)
T 4euy_A           80 NGKE-I--LRESRFISLENLERTIQLF  103 (105)
T ss_dssp             TTEE-E--EEEESSCCHHHHHHHHHTT
T ss_pred             CCeE-E--EEEeCCcCHHHHHHHHHHh
Confidence            5422 1  2346777888999988753

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=96.87  E-value=0.0034  Score=53.68  Aligned_cols=97  Identities=13%  Similarity=0.195  Sum_probs=65.6

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++++.+.   ..++++++.|....-+..+..     ..+..+.+++.|+.++++  .+.+++++|+|.. .||
T Consensus        24 v~~l~~~~f~~~~~---~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~-~Pt   97 (128)
T 2o8v_B           24 IIHLTDDSFDTDVL---KADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNID--QNPGTAPKYGIRG-IPT   97 (128)
T ss_dssp             SEEECTTTHHHHTT---TCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETT--TCCTTSGGGTCCS-SSE
T ss_pred             cEecChhhHHHHHH---hcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECC--CCHHHHHHcCCCc-cCE
Confidence            45567888886553   356777777755443322211     122245567999999987  6788999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++.. .  ....|..+.+.|.+||+.
T Consensus        98 ~~~~~~G~~-~--~~~~G~~~~~~l~~~l~~  125 (128)
T 2o8v_B           98 LLLFKNGEV-A--ATKVGALSKGQLKEFLDA  125 (128)
T ss_dssp             EEEEETTEE-E--EEEESCCCHHHHHHHHHH
T ss_pred             EEEEeCCEE-E--EEEcCCCCHHHHHHHHHH
Confidence            999965322 1  235677788888888864

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=96.86  E-value=0.006  Score=49.47  Aligned_cols=94  Identities=16%  Similarity=0.138  Sum_probs=63.6

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH-----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEE
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN-----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLL  317 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~-----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlv  317 (554)
                      +.+.+++++.++..  .+++.++.|....-+..+....     +..+ +.+.|..++++  .+.+++++|++.+ .|+++
T Consensus         5 i~~~~~~~~~l~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~-~~~~~~~vd~~--~~~~~~~~~~v~~-~Pt~~   78 (105)
T 3m9j_A            5 IESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKY-SNVIFLEVDVD--DCQDVASESEVKS-MPTFQ   78 (105)
T ss_dssp             CCSHHHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHS-TTSEEEEEETT--TCHHHHHHTTCCB-SSEEE
T ss_pred             cCCHHHHHHHHHhc--CCCeEEEEEECCCChhhHHHHHHHHHHHHHc-cCeEEEEEEhh--hhHHHHHHcCCCc-CcEEE
Confidence            34667888888642  5777888776554443332222     1133 34999999987  6889999999997 99999


Q ss_pred             EEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        318 IFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       318 vfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +|+++.. .  ....|. +...|.++++.
T Consensus        79 ~~~~g~~-~--~~~~g~-~~~~l~~~l~~  103 (105)
T 3m9j_A           79 FFKKGQK-V--GEFSGA-NKEKLEATINE  103 (105)
T ss_dssp             EEETTEE-E--EEEESS-CHHHHHHHHHH
T ss_pred             EEECCeE-E--EEEeCC-CHHHHHHHHHH
Confidence            9976432 1  234455 77888888864

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=96.86  E-value=0.0029  Score=53.72  Aligned_cols=98  Identities=15%  Similarity=0.193  Sum_probs=62.4

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCch--------------h----HHHHH-HhhccCCceEEEEEEccCCCCh
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPV--------------R----LRYLI-NAFKHRTTIVFGVIVYDQEDSS  301 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~--------------~----~~~~~-~a~~~~~~v~Fg~v~~~~~~~~  301 (554)
                      +..++++++++.+.   ..++++++.|....-+              +    ...+. .+..+.+++.|+.++++  .+.
T Consensus         5 v~~l~~~~f~~~~~---~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d--~~~   79 (123)
T 1oaz_A            5 IIHLTDDSFDTDVL---KADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNID--QNP   79 (123)
T ss_dssp             CEECCSTTHHHHTT---SCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETT--SCT
T ss_pred             cEecChhhHHHHHH---hCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECC--CCH
Confidence            45678888876543   3567777777443222              1    11111 12245567999999987  678


Q ss_pred             hHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        302 SVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       302 ~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +++++|+|.+ .||+++|+++.. .  ....|..+.+.|.+||+..
T Consensus        80 ~l~~~~~v~~-~Pt~~~~~~G~~-~--~~~~G~~~~~~l~~~l~~~  121 (123)
T 1oaz_A           80 GTAPKYGIRG-IPTLLLFKNGEV-A--ATKVGALSKGQLKEFLDAN  121 (123)
T ss_dssp             TTGGGGTCCB-SSEEEEEESSSE-E--EEEESCCCHHHHHHHHTTT
T ss_pred             HHHHHcCCCc-cCEEEEEECCEE-E--EEEeCCCCHHHHHHHHHHH
Confidence            8999999997 999999965332 1  2456777888899998753

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=96.86  E-value=0.0028  Score=57.30  Aligned_cols=44  Identities=20%  Similarity=0.242  Sum_probs=34.9

Q ss_pred             CCCcEEEEEEccccc-ccccchHHHHHHHHHhC--CCCEEEEEEEec
Q psy16770        146 YTTPHLILFYSDWCF-ACLQVEPIFKKLMDELS--PLGVGFFTVHVH  189 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~-~C~~l~p~~~~~a~~l~--~~~v~~~~Vd~~  189 (554)
                      .+++++|.||.+||+ .|....+.+.++.+.++  +.++.+..|.++
T Consensus        31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A           31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            357999999999996 69999998888887775  335777777665

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=96.85  E-value=0.0057  Score=50.59  Aligned_cols=96  Identities=14%  Similarity=0.190  Sum_probs=65.1

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      ...++.+++++.++    .++++++.|....-+.......    .......+.|..++++  .+.+++++|+|.. .|++
T Consensus        11 ~~~~~~~~f~~~~~----~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~--~~~~~~~~~~v~~-~Pt~   83 (112)
T 1syr_A           11 KIVTSQAEFDSIIS----QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVD--EVSEVTEKENITS-MPTF   83 (112)
T ss_dssp             EEECSHHHHHHHHH----HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT--TTHHHHHHTTCCS-SSEE
T ss_pred             EEECCHHHHHHHHc----cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECC--CCHHHHHHcCCCc-ccEE
Confidence            45678889999884    4677777775544333222221    1122236999999887  6788999999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      ++|+++.. .  ....|. +.+.|.+||+..
T Consensus        84 ~~~~~G~~-~--~~~~G~-~~~~l~~~l~~~  110 (112)
T 1syr_A           84 KVYKNGSS-V--DTLLGA-NDSALKQLIEKY  110 (112)
T ss_dssp             EEEETTEE-E--EEEESC-CHHHHHHHHHTT
T ss_pred             EEEECCcE-E--EEEeCC-CHHHHHHHHHHh
Confidence            99975322 1  234555 788899988753

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=96.84  E-value=0.00088  Score=62.04  Aligned_cols=45  Identities=20%  Similarity=0.389  Sum_probs=39.5

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE  191 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~  191 (554)
                      ..++.+|+|+++||+||+++.|.+.++.+.+.+ ++.|..++..-+
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~~~   67 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVVWQ   67 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECCCS
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCCCC
Confidence            457899999999999999999999999998876 599999988643

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=96.82  E-value=0.0022  Score=56.59  Aligned_cols=111  Identities=16%  Similarity=0.130  Sum_probs=77.0

Q ss_pred             cccccccccccccccccCCCCCCcEEEE-EEcccccccccchHHHHHHHHHhCCCCEEEEEEEe--cCcHHHHHHhCCcC
Q psy16770        126 LFHKLSTTHWNFEKNYIPKSYTTPHLIL-FYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV--HNEQGLARRLGVGS  202 (554)
Q Consensus       126 ~~~~~~Lt~~~F~~~v~~~~~~~~~lV~-Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~--~~~~~l~~~~~v~~  202 (554)
                      ..-+.++|.+++....   ++.-+..+. |..+.-..-..+.+.+.++|+.+++ .+.|+.||.  .....+.+.+|++.
T Consensus        13 ~PLV~e~t~en~~~~~---~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkg-ki~Fv~vd~~~~~~~~~l~~fGl~~   88 (147)
T 3bj5_A           13 LPLVIEFTEQTAPKIF---GGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG-KILFAFIDSDHTDNQRILEFFGLKK   88 (147)
T ss_dssp             --CEEECCTTTHHHHH---SSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTT-TCEEEEECTTCGGGHHHHHHTTCCG
T ss_pred             CCeeEEeccccHHHHh---cCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCC-ceEEEEEecchHhHHHHHHHcCCCc
Confidence            3457778888876665   334454444 4333333345578999999999998 499999999  66677899999984


Q ss_pred             -CCCcceeccC---CeEEEEeCCcccHHHHHHHHHHhCCCCc
Q psy16770        203 -QLPQIALLTD---GRTSFFKEPSFSVQKMVEFFRLKLPYKL  240 (554)
Q Consensus       203 -~~Pti~~~~~---g~~~~y~~g~~~~~~i~~fl~~~~~~~~  240 (554)
                       ..|++.++..   ++...+..+..+.+.|.+|+.+.+...+
T Consensus        89 ~~~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~GkL  130 (147)
T 3bj5_A           89 EECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKI  130 (147)
T ss_dssp             GGCSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTTCS
T ss_pred             ccCCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcCCc
Confidence             3899988853   3332223356688999999998876653

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=96.82  E-value=0.00089  Score=57.77  Aligned_cols=80  Identities=10%  Similarity=0.194  Sum_probs=50.3

Q ss_pred             cccccccccCCCCCCcEEEEEEcccccccccc-hHHHHHHHHHhCCCCEEEEEEEecCc-------HHHHHHhCCcCCCC
Q psy16770        134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQV-EPIFKKLMDELSPLGVGFFTVHVHNE-------QGLARRLGVGSQLP  205 (554)
Q Consensus       134 ~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l-~p~~~~~a~~l~~~~v~~~~Vd~~~~-------~~l~~~~~v~~~~P  205 (554)
                      .+.+++.+.   .. . ++.|+++||++|+++ .+.+++...    ..+.+..+|.+.+       ..+.+.+|+.+ +|
T Consensus        27 ~~~v~~~i~---~~-~-Vvvy~~~~Cp~C~~a~k~~L~~~~~----~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~t-VP   96 (129)
T 3ctg_A           27 VAHVKDLIG---QK-E-VFVAAKTYCPYCKATLSTLFQELNV----PKSKALVLELDEMSNGSEIQDALEEISGQKT-VP   96 (129)
T ss_dssp             HHHHHHHHH---HS-S-EEEEECTTCHHHHHHHHHHHTTSCC----CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCS-SC
T ss_pred             HHHHHHHHc---CC-C-EEEEECCCCCchHHHHHHHHHhcCc----cCCCcEEEEccccCCHHHHHHHHHHHhCCCC-CC
Confidence            345555552   22 2 677999999999987 665553211    0155666676654       36888899997 99


Q ss_pred             cceeccCCeEEEEeCCcccHHHHHHH
Q psy16770        206 QIALLTDGRTSFFKEPSFSVQKMVEF  231 (554)
Q Consensus       206 ti~~~~~g~~~~y~~g~~~~~~i~~f  231 (554)
                      ++  |.+|+.+   ||.   +++..+
T Consensus        97 ~v--fi~g~~i---gG~---d~l~~l  114 (129)
T 3ctg_A           97 NV--YINGKHI---GGN---SDLETL  114 (129)
T ss_dssp             EE--EETTEEE---ESH---HHHHHH
T ss_pred             EE--EECCEEE---cCH---HHHHHH
Confidence            96  5678643   554   445443

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=96.79  E-value=0.00077  Score=61.35  Aligned_cols=55  Identities=15%  Similarity=0.175  Sum_probs=39.7

Q ss_pred             CCcEEEEE-Ecccccccc-cchHHHHHHHHHhCCCCEEEEE-EEecC---cHHHHHHhCCc
Q psy16770        147 TTPHLILF-YSDWCFACL-QVEPIFKKLMDELSPLGVGFFT-VHVHN---EQGLARRLGVG  201 (554)
Q Consensus       147 ~~~~lV~F-ya~wC~~C~-~l~p~~~~~a~~l~~~~v~~~~-Vd~~~---~~~l~~~~~v~  201 (554)
                      ++++++.| ++.||+.|. ...|.+.+++++++..|+.+.. |..+.   ....++++++.
T Consensus        43 gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~  103 (173)
T 3mng_A           43 GKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAE  103 (173)
T ss_dssp             TSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred             CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCC
Confidence            34455444 599999999 5889999999999877777764 76665   33455666654

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=96.78  E-value=0.01  Score=48.47  Aligned_cols=95  Identities=8%  Similarity=0.014  Sum_probs=62.0

Q ss_pred             ccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        242 VPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      .+.+.+++++.+..  ..++++++.|....-+..+...     .+..+ +++.|..++++  .+.+++++|+|.+ .||+
T Consensus         5 ~i~~~~~~~~~~~~--~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~vd~~--~~~~~~~~~~v~~-~Pt~   78 (107)
T 1gh2_A            5 PVGSDPDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVH--QCQGTAATNNISA-TPTF   78 (107)
T ss_dssp             EECSGGGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETT--TSHHHHHHTTCCS-SSEE
T ss_pred             EecCHHHHHHHHHh--CCCCEEEEEEECCCChhhHHHHHHHHHHHHHC-CCcEEEEEECc--cCHHHHHhcCCCc-ccEE
Confidence            34467889888853  2467777777654443322222     11233 57999999987  6889999999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      ++|+++..  . ....|. ....|.+||+.
T Consensus        79 ~~~~~G~~--~-~~~~G~-~~~~l~~~l~~  104 (107)
T 1gh2_A           79 QFFRNKVR--I-DQYQGA-DAVGLEEKIKQ  104 (107)
T ss_dssp             EEEETTEE--E-EEEESS-CHHHHHHHHHH
T ss_pred             EEEECCeE--E-EEEeCC-CHHHHHHHHHH
Confidence            99976432  1 123343 34458888764

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=96.73  E-value=0.0065  Score=53.83  Aligned_cols=99  Identities=14%  Similarity=0.095  Sum_probs=66.4

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEE
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLL  317 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlv  317 (554)
                      +-|.+++++.+.+  +.++++++-|...--++.+..     ..+.++.+.+.|+.+|.+  ..++++++|+|.. .||++
T Consensus        26 l~t~~~f~~~v~~--~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVD--e~~e~a~~y~V~s-iPT~~  100 (160)
T 2av4_A           26 LNSGWAVDQAIVN--EDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDIT--EVPDFNTMYELYD-PVSVM  100 (160)
T ss_dssp             CCSHHHHHHHHHH--CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETT--TCCTTTTTTTCCS-SEEEE
T ss_pred             cCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECC--CCHHHHHHcCCCC-CCEEE
Confidence            3356888887743  357788887765544443322     223356678999999998  7899999999997 99999


Q ss_pred             EEeCCCCCCCc------eeecCCCC-hhHHHhHHhc
Q psy16770        318 IFKEDKDRPSA------SITMNSIP-VPTLQDITDN  346 (554)
Q Consensus       318 vfk~~~~~~~~------~i~~~~~~-~~~l~~fi~~  346 (554)
                      +|+++..-..+      ....+..+ .+.|.++|+.
T Consensus       101 fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~  136 (160)
T 2av4_A          101 FFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVET  136 (160)
T ss_dssp             EEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHH
T ss_pred             EEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHH
Confidence            99875431000      01234455 7778888764

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=96.73  E-value=0.001  Score=55.94  Aligned_cols=59  Identities=17%  Similarity=0.363  Sum_probs=42.1

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC--c-----HHHHHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--E-----QGLARRLGVGSQLPQIALLTDGRTSFFKEPS  222 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~--~-----~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~  222 (554)
                      ++.|+++||++|++..+.+++.       |+.+..+|.+.  +     ..+.+..|..+ +|++.+  +|+   ..||.
T Consensus        19 v~vy~~~~Cp~C~~ak~~L~~~-------~i~~~~~dvd~~~~~~~~~~~l~~~~g~~t-vP~vfi--~g~---~igG~   84 (114)
T 3h8q_A           19 VVIFSKSYCPHSTRVKELFSSL-------GVECNVLELDQVDDGARVQEVLSEITNQKT-VPNIFV--NKV---HVGGC   84 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETTTSTTHHHHHHHHHHHHSCCS-SCEEEE--TTE---EEESH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHc-------CCCcEEEEecCCCChHHHHHHHHHHhCCCc-cCEEEE--CCE---EEeCH
Confidence            4559999999999888777752       46677777775  2     23667778886 999755  775   34554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.72  E-value=0.0055  Score=60.06  Aligned_cols=100  Identities=14%  Similarity=0.212  Sum_probs=70.3

Q ss_pred             CCccccCCcccHHHHHhhhhcCCceEEEEEecC-------CchhHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCC
Q psy16770        238 YKLIVPLSATNVDAFLDNWREDNKVHALLFQRS-------LPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVP  310 (554)
Q Consensus       238 ~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~-------~~~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~  310 (554)
                      ...+..+|.+++++.+..  ..++++++.|...       ..+.+.  ..+..+.+++.|+.++++  .+++++++|+|.
T Consensus         6 ~~~v~~~~~~~f~~~~~~--~~~~~v~v~f~a~wC~~C~~~~p~~~--~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~   79 (287)
T 3qou_A            6 VENIVNINESNLQQVLEQ--SMTTPVLFYFWSERSQHCLQLTPILE--SLAAQYNGQFILAKLDCD--AEQMIAAQFGLR   79 (287)
T ss_dssp             CTTEEECCTTTHHHHHTT--TTTSCEEEEEECTTCTTTTTTHHHHH--HHHHHHTSSSEEEEEETT--TCHHHHHTTTCC
T ss_pred             CCccEECCHHHHHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHH--HHHHHcCCCeEEEEEeCc--cCHHHHHHcCCC
Confidence            334677889999998853  2467777766322       222222  222345677999999998  688999999999


Q ss_pred             CCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        311 GDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       311 ~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      + .||+++|+++.  .. ..+.+..+...+.+|+...
T Consensus        80 ~-~Pt~~~~~~G~--~~-~~~~g~~~~~~l~~~l~~~  112 (287)
T 3qou_A           80 A-IPTVYLFQNGQ--PV-DGFQGPQPEEAIRALLDXV  112 (287)
T ss_dssp             S-SSEEEEEETTE--EE-EEEESCCCHHHHHHHHHHH
T ss_pred             C-CCeEEEEECCE--EE-EEeeCCCCHHHHHHHHHHH
Confidence            7 99999997542  21 2356777888899999865

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.72  E-value=0.0014  Score=56.17  Aligned_cols=100  Identities=12%  Similarity=0.102  Sum_probs=65.4

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccC--CceEEEEEEccCCCChhHHhHhCCCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHR--TTIVFGVIVYDQEDSSSVFQRFKVPGDK  313 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~--~~v~Fg~v~~~~~~~~~l~~k~~i~~~~  313 (554)
                      +..++.++++..+..   .++++++.|....-+..+...     .+..+.  +.+.|+.++++  .+..++++|+|.. .
T Consensus         9 v~~l~~~~~~~~~~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~-~   82 (133)
T 2dj3_A            9 VKVVVGKTFDAIVMD---PKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDAT--ANDITNDQYKVEG-F   82 (133)
T ss_dssp             SEECCTTTCCCCCTC---TTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTT--TSCCCCSSCCCSS-S
T ss_pred             eEEEcCCCHHHHhcc---CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCC--cCHHHHhhcCCCc-C
Confidence            566777777776632   367777777544333222211     112333  57999999887  5677889999997 9


Q ss_pred             ceEEEEeCCCCCCCceeec-CCCChhHHHhHHhcC
Q psy16770        314 DSLLIFKEDKDRPSASITM-NSIPVPTLQDITDNN  347 (554)
Q Consensus       314 Ptlvvfk~~~~~~~~~i~~-~~~~~~~l~~fi~~~  347 (554)
                      ||+++|+++.... ...+. +..+...|.+||+.+
T Consensus        83 Pt~~~~~~g~~~~-~~~~~gg~~~~~~l~~~l~~~  116 (133)
T 2dj3_A           83 PTIYFAPSGDKKN-PIKFEGGNRDLEHLSKFIDEH  116 (133)
T ss_dssp             SEEEEECTTCTTS-CEECCSSCCSTTHHHHHHHHH
T ss_pred             CEEEEEeCCCccc-ceEecCCCcCHHHHHHHHHHh
Confidence            9999998754322 12234 557888899999865

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=96.70  E-value=0.01  Score=48.72  Aligned_cols=99  Identities=13%  Similarity=0.147  Sum_probs=63.8

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      +.+.+.+++++.+......++++++.|....-+.......    .....+++.|..++++  .+.+++++|++.+ .|++
T Consensus         7 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~--~~~~~~~~~~v~~-~Pt~   83 (113)
T 1ti3_A            7 IACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVD--ELKAVAEEWNVEA-MPTF   83 (113)
T ss_dssp             EEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETT--TCHHHHHHHHCSS-TTEE
T ss_pred             eEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcc--ccHHHHHhCCCCc-ccEE
Confidence            3444668888888653235778888776654443332221    1122237999999887  6789999999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      ++|+++..  . ....| .+...|.++|+.
T Consensus        84 ~~~~~G~~--~-~~~~g-~~~~~l~~~l~~  109 (113)
T 1ti3_A           84 IFLKDGKL--V-DKTVG-ADKDGLPTLVAK  109 (113)
T ss_dssp             EEEETTEE--E-EEEEC-CCTTHHHHHHHH
T ss_pred             EEEeCCEE--E-EEEec-CCHHHHHHHHHH
Confidence            99975322  1 12334 466677777764

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=96.70  E-value=0.01  Score=47.87  Aligned_cols=94  Identities=11%  Similarity=0.202  Sum_probs=61.6

Q ss_pred             CCc-ccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEE
Q psy16770        244 LSA-TNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLI  318 (554)
Q Consensus       244 ~t~-~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvv  318 (554)
                      +++ +++++.+..  ..+++.++.|....-+.......    .....+.+.|+.++++  .+.+++++|++.+ .|++++
T Consensus         4 i~~~~~~~~~l~~--~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~-~Pt~~~   78 (104)
T 2vim_A            4 LATAADLEKLINE--NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVD--QNEEAAAKYSVTA-MPTFVF   78 (104)
T ss_dssp             CCSHHHHHHHHHT--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT--TCHHHHHHTTCCS-SSEEEE
T ss_pred             cCCHHHHHHHHHh--cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEecc--CCHHHHHHcCCcc-ccEEEE
Confidence            444 778888864  25777777776544443222221    1122237999999987  6788999999997 999999


Q ss_pred             EeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        319 FKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       319 fk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      |+++..  . ....| .+.+.|.+||+.
T Consensus        79 ~~~g~~--~-~~~~G-~~~~~l~~~l~~  102 (104)
T 2vim_A           79 IKDGKE--V-DRFSG-ANETKLRETITR  102 (104)
T ss_dssp             EETTEE--E-EEEES-SCHHHHHHHHHH
T ss_pred             EeCCcE--E-EEEeC-CCHHHHHHHHHh
Confidence            985322  1 22344 577788888864

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=96.70  E-value=0.012  Score=48.54  Aligned_cols=96  Identities=7%  Similarity=0.097  Sum_probs=63.6

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      +..++.+++ +.+.    .+++.++.|....-+.......    .....+.+.|..++++  .+.+++++|+|.+ .||+
T Consensus         5 ~~~~~~~~f-~~~~----~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~-~Pt~   76 (110)
T 2l6c_A            5 RDITTEAGM-AHFE----GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSE--ARPELMKELGFER-VPTL   76 (110)
T ss_dssp             SBCGGGCSH-HHHT----TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGG--GCHHHHHHTTCCS-SCEE
T ss_pred             eecCCHHHH-HHHH----cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCc--CCHHHHHHcCCcc-cCEE
Confidence            345677888 5553    3567777775544333222221    1122347899999887  6889999999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      ++|+++.. .  ....|..+.+.|.+++...
T Consensus        77 ~~~~~G~~-v--~~~~G~~~~~~l~~~~~~~  104 (110)
T 2l6c_A           77 VFIRDGKV-A--KVFSGIMNPRELQALYASI  104 (110)
T ss_dssp             EEEESSSE-E--EEEESCCCHHHHHHHHHTC
T ss_pred             EEEECCEE-E--EEEcCCCCHHHHHHHHHHH
Confidence            99965432 1  2345777888899988865

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.65  E-value=0.0024  Score=55.14  Aligned_cols=96  Identities=16%  Similarity=0.143  Sum_probs=61.5

Q ss_pred             ccccCCcccHHHHHhhhhcCCceEEEEEecC-------CchhHHHHHHhhccCC-ceEEEEEEccCCCChhHHhHhCCC-
Q psy16770        240 LIVPLSATNVDAFLDNWREDNKVHALLFQRS-------LPVRLRYLINAFKHRT-TIVFGVIVYDQEDSSSVFQRFKVP-  310 (554)
Q Consensus       240 ~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~-------~~~~~~~~~~a~~~~~-~v~Fg~v~~~~~~~~~l~~k~~i~-  310 (554)
                      .+..++.+++++.+..  ...+++++.|...       ..+.+..  .+.++.+ .+.|+.++++  .+.+++++|+|. 
T Consensus         8 ~v~~l~~~~f~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~~~~--l~~~~~~~~v~~~~vd~~--~~~~~~~~~~v~~   81 (137)
T 2dj0_A            8 YIKYFNDKTIDEELER--DKRVTWIVEFFANWSNDCQSFAPIYAD--LSLKYNCTGLNFGKVDVG--RYTDVSTRYKVST   81 (137)
T ss_dssp             CCEECCTTHHHHHHHH--STTSCEEEEECCTTCSTTTTTHHHHHH--HHHHHCSSSCEEEECCTT--TCHHHHHHTTCCC
T ss_pred             eEEEccHhhHHHHHhc--CCCCEEEEEEECCCCHHHHHHHHHHHH--HHHHhCCCCeEEEEEeCc--cCHHHHHHccCcc
Confidence            3667788999988865  2455777777322       2222222  2224453 7999999887  688999999998 


Q ss_pred             -----CCCceEEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770        311 -----GDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       311 -----~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~  345 (554)
                           . .||+++|+++.. .  ....+..+...|.+|+.
T Consensus        82 ~~~~~~-~Pt~~~~~~G~~-~--~~~~G~~~~~~l~~~l~  117 (137)
T 2dj0_A           82 SPLTKQ-LPTLILFQGGKE-A--MRRPQIDKKGRAVSWTF  117 (137)
T ss_dssp             CSSSSC-SSEEEEESSSSE-E--EEESCBCSSSCBCCCCC
T ss_pred             cCCcCC-CCEEEEEECCEE-E--EEecCcCchHHHHHHHh
Confidence                 6 999999975322 1  12345555555555554

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=96.59  E-value=0.015  Score=49.19  Aligned_cols=98  Identities=17%  Similarity=0.165  Sum_probs=63.5

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH-----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN-----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~-----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +.+.+.+++++.+......++++++.|....-+.......     +..+ ..+.|..++++  .+.+++++|+|.+ .||
T Consensus        19 ~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~d--~~~~l~~~~~v~~-~Pt   94 (124)
T 1xfl_A           19 IACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKL-PNVLFLKVDTD--ELKSVASDWAIQA-MPT   94 (124)
T ss_dssp             EEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHC-SSEEEEEEETT--TSHHHHHHTTCCS-SSE
T ss_pred             EEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCcEEEEEECc--cCHHHHHHcCCCc-cCE
Confidence            3344668888877643235778888776544443322221     1133 37899999887  6889999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++..  . ....+ .+.+.|.++|+.
T Consensus        95 ~~~~~~G~~--~-~~~~G-~~~~~l~~~l~~  121 (124)
T 1xfl_A           95 FMFLKEGKI--L-DKVVG-AKKDELQSTIAK  121 (124)
T ss_dssp             EEEEETTEE--E-EEEES-CCHHHHHHHHHH
T ss_pred             EEEEECCEE--E-EEEeC-CCHHHHHHHHHH
Confidence            999975322  1 12334 467778888764

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=96.57  E-value=0.0095  Score=50.66  Aligned_cols=94  Identities=12%  Similarity=0.176  Sum_probs=61.6

Q ss_pred             cccCCc-ccHHHHHhhhhcCCceEEEEEecCCchhHHHH----H-HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        241 IVPLSA-TNVDAFLDNWREDNKVHALLFQRSLPVRLRYL----I-NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       241 v~~~t~-~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~----~-~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      +..+++ +++++.+.    .++++++.|....-+.....    . .+..+ +.+.|..++++  .+.+++++|+|.. .|
T Consensus        21 v~~l~~~~~f~~~~~----~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~vd~d--~~~~l~~~~~v~~-~P   92 (125)
T 1r26_A           21 VVDVYSVEQFRNIMS----EDILTVAWFTAVWCGPCKTIERPMEKIAYEF-PTVKFAKVDAD--NNSEIVSKCRVLQ-LP   92 (125)
T ss_dssp             CEEECCHHHHHHHHH----SSSCEEEEEECTTCHHHHHTHHHHHHHHHHC-TTSEEEEEETT--TCHHHHHHTTCCS-SS
T ss_pred             eEECCCHHHHHHHHc----cCCEEEEEEECCcCHhHHHHHHHHHHHHHHC-CCCEEEEEECC--CCHHHHHHcCCCc-cc
Confidence            455666 88888883    46677777754433322211    1 11233 56999999987  6889999999997 99


Q ss_pred             eEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        315 SLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      |+++|+++..  . ....+ .+...|.++|+.
T Consensus        93 t~~i~~~G~~--~-~~~~G-~~~~~l~~~l~~  120 (125)
T 1r26_A           93 TFIIARSGKM--L-GHVIG-ANPGMLRQKLRD  120 (125)
T ss_dssp             EEEEEETTEE--E-EEEES-SCHHHHHHHHHH
T ss_pred             EEEEEeCCeE--E-EEEeC-CCHHHHHHHHHH
Confidence            9999975432  1 12344 566778887763

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=96.56  E-value=0.00079  Score=62.14  Aligned_cols=43  Identities=21%  Similarity=0.468  Sum_probs=36.5

Q ss_pred             CCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEecC
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVHN  190 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~~  190 (554)
                      .++.+|+|++.||+||+++.|.+   .++.+.+.+ +++|..++..-
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~   59 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHVSL   59 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEECSS
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEechh
Confidence            46899999999999999999986   677777765 58898888775

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=96.55  E-value=0.012  Score=48.74  Aligned_cols=99  Identities=14%  Similarity=0.142  Sum_probs=63.5

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHh----hccCCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINA----FKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a----~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      +.+.+.+++++.+......++++++.|....-+........    ....+.+.|..++++  .+.+++++|++.+ .|++
T Consensus         9 ~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~-~Pt~   85 (118)
T 2vm1_A            9 IACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVD--ELKDVAEAYNVEA-MPTF   85 (118)
T ss_dssp             EECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT--TSHHHHHHTTCCS-BSEE
T ss_pred             EEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcc--cCHHHHHHcCCCc-CcEE
Confidence            34446788888886532246777777765444433322211    112237899999887  6789999999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      ++|+++..  . ....| .+...|.++|+.
T Consensus        86 ~~~~~g~~--~-~~~~g-~~~~~l~~~l~~  111 (118)
T 2vm1_A           86 LFIKDGEK--V-DSVVG-GRKDDIHTKIVA  111 (118)
T ss_dssp             EEEETTEE--E-EEEES-CCHHHHHHHHHH
T ss_pred             EEEeCCeE--E-EEecC-CCHHHHHHHHHH
Confidence            99975332  1 12334 466778887764

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=96.48  E-value=0.0077  Score=51.23  Aligned_cols=83  Identities=13%  Similarity=0.094  Sum_probs=58.1

Q ss_pred             CCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecC
Q psy16770        259 DNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMN  333 (554)
Q Consensus       259 ~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~  333 (554)
                      .++++++.|....-+..+...     .+..+.+++.|..++++  .+.+++++|+|.+ .||+++|+++.. .  ....|
T Consensus        41 ~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d--~~~~l~~~~~v~~-~Pt~~~~~~G~~-~--~~~~G  114 (128)
T 3ul3_B           41 KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLD--KNESLARKFSVKS-LPTIILLKNKTM-L--ARKDH  114 (128)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGG--GCHHHHHHTTCCS-SSEEEEEETTEE-E--EEESS
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECC--CCHHHHHHcCCCC-cCEEEEEECCEE-E--EEecC
Confidence            577888877554433322221     11244568999999988  6889999999997 999999965322 1  34567


Q ss_pred             CCChhHHHhHHhcC
Q psy16770        334 SIPVPTLQDITDNN  347 (554)
Q Consensus       334 ~~~~~~l~~fi~~~  347 (554)
                      ..+.+.|.+||+.+
T Consensus       115 ~~~~~~l~~~l~~~  128 (128)
T 3ul3_B          115 FVSSNDLIALIKKH  128 (128)
T ss_dssp             CCCHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHhC
Confidence            78888999998753

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=96.48  E-value=0.011  Score=49.34  Aligned_cols=98  Identities=12%  Similarity=0.113  Sum_probs=61.4

Q ss_pred             CCCccccCC-cccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCC
Q psy16770        237 PYKLIVPLS-ATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVP  310 (554)
Q Consensus       237 ~~~~v~~~t-~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~  310 (554)
                      |+..+..++ .+++++.++    .++++++.|....-+..+...     .+..+.+ +.|..++++  .+.+++++|+|.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~----~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~--~~~~l~~~~~v~   82 (114)
T 2oe3_A           10 SYTSITKLTNLTEFRNLIK----QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVD--ESPDIAKECEVT   82 (114)
T ss_dssp             CGGGSCBCCSHHHHHHHHH----HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETT--TCHHHHHHTTCC
T ss_pred             chhheeecCCHHHHHHHHh----CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECC--CCHHHHHHCCCC
Confidence            333344444 466777664    467777777544333222211     1223334 999999887  678999999999


Q ss_pred             CCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        311 GDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       311 ~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      . .|++++|+++..  . ....|.. .+.|.++|+.
T Consensus        83 ~-~Pt~~~~~~G~~--~-~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           83 A-MPTFVLGKDGQL--I-GKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             S-BSEEEEEETTEE--E-EEEESSC-HHHHHHHHHT
T ss_pred             c-ccEEEEEeCCeE--E-EEEeCCC-HHHHHHHHHh
Confidence            7 999999975432  1 2244555 7788888864

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=96.47  E-value=0.0096  Score=50.08  Aligned_cols=93  Identities=13%  Similarity=0.102  Sum_probs=60.6

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH-----hhccCCc-eEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN-----AFKHRTT-IVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~-----a~~~~~~-v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      +.+.+++++.+    ..++++++.|....-+.......     +..+.+. +.|..++++  .+.+++++|+|.+ .||+
T Consensus        20 i~~~~~f~~~l----~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d--~~~~~~~~~~v~~-~Pt~   92 (121)
T 2j23_A           20 ISSYDQFKQVT----GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD--EQSQIAQEVGIRA-MPTF   92 (121)
T ss_dssp             CCSHHHHHHHH----SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETT--TCHHHHHHHTCCS-SSEE
T ss_pred             cCCHHHHHHHH----cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECc--CCHHHHHHcCCCc-ccEE
Confidence            33558888888    35677777775544333222221     1133333 899999887  6789999999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      ++|+++..  . ....|. +.+.|.+||+.
T Consensus        93 ~~~~~G~~--~-~~~~G~-~~~~l~~~l~~  118 (121)
T 2j23_A           93 VFFKNGQK--I-DTVVGA-DPSKLQAAITQ  118 (121)
T ss_dssp             EEEETTEE--E-EEEESS-CHHHHHHHHHH
T ss_pred             EEEECCeE--E-eeEcCC-CHHHHHHHHHH
Confidence            99975322  1 223455 77888888864

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=96.43  E-value=0.013  Score=55.18  Aligned_cols=99  Identities=15%  Similarity=0.210  Sum_probs=69.5

Q ss_pred             ccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        240 LIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       240 ~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      .+..+|++++++.+.   ..++++++.|....-++.+...     .+..+.+.+.|+.++++  .+.+++++|+|.+ .|
T Consensus        13 ~~~~lt~~~f~~~v~---~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d--~~~~l~~~~~v~~-~P   86 (222)
T 3dxb_A           13 KIIHLTDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID--QNPGTAPKYGIRG-IP   86 (222)
T ss_dssp             CCEECCTTTHHHHHT---TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT--TCTTTGGGGTCCS-BS
T ss_pred             CceeCCHHHHHHHHH---hcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECC--CCHHHHHHcCCCc-CC
Confidence            466788999988543   2467777777544433322221     22255667999999987  6888999999997 99


Q ss_pred             eEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        315 SLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      |+++|+++..   .....|..+...|.+|++..
T Consensus        87 t~~~~~~G~~---~~~~~G~~~~~~l~~~l~~~  116 (222)
T 3dxb_A           87 TLLLFKNGEV---AATKVGALSKGQLKEFLDAN  116 (222)
T ss_dssp             EEEEEETTEE---EEEEESCCCHHHHHHHHHHH
T ss_pred             EEEEEECCeE---EEEeccccChHHHHHHHHhh
Confidence            9999985322   12456778888999998754

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=96.41  E-value=0.02  Score=47.03  Aligned_cols=93  Identities=14%  Similarity=0.158  Sum_probs=61.0

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHh----hccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEE
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINA----FKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLI  318 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a----~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvv  318 (554)
                      ..+.+++++.+.    .++++++.|....-+..+.....    .+....+.|..++++  .+.+++++|+|.+ .||+++
T Consensus        11 ~~~~~~f~~~~~----~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~--~~~~l~~~~~v~~-~Pt~~~   83 (109)
T 3f3q_A           11 FKTASEFDSAIA----QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVD--ELGDVAQKNEVSA-MPTLLL   83 (109)
T ss_dssp             CCSHHHHHHHTT----SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT--TCHHHHHHTTCCS-SSEEEE
T ss_pred             CCCHHHHHHHHh----cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECC--CCHHHHHHcCCCc-cCEEEE
Confidence            445677887773    47788887755444433322211    122345899999887  6889999999997 999999


Q ss_pred             EeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        319 FKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       319 fk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      |+++ ...  ....|. ..+.|.++|+.
T Consensus        84 ~~~G-~~~--~~~~G~-~~~~l~~~i~~  107 (109)
T 3f3q_A           84 FKNG-KEV--AKVVGA-NPAAIKQAIAA  107 (109)
T ss_dssp             EETT-EEE--EEEESS-CHHHHHHHHHH
T ss_pred             EECC-EEE--EEEeCC-CHHHHHHHHHh
Confidence            9843 211  123344 55788888764

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.017  Score=47.42  Aligned_cols=97  Identities=11%  Similarity=0.157  Sum_probs=59.3

Q ss_pred             ccCCc-ccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----Hhhcc-CCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        242 VPLSA-TNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKH-RTTIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       242 ~~~t~-~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~-~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      ..+++ +++++.+.. ...++++++.|....-+..+...     .+..+ .+.+.|..++++  .+.+++++|+|.+ .|
T Consensus         3 ~~i~~~~~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~-~P   78 (112)
T 3d6i_A            3 IEINDQEQFTYLTTT-AAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDAD--ENSEISELFEISA-VP   78 (112)
T ss_dssp             EEECCHHHHHHHHTT-TTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETT--TCHHHHHHTTCCS-SS
T ss_pred             cccCCHHHHHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecc--cCHHHHHHcCCCc-cc
Confidence            34455 788888853 12467777777544333222221     11122 356999999987  6889999999997 99


Q ss_pred             eEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        315 SLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      |+++|+++..  . ....|. ....|.++|+.
T Consensus        79 t~~~~~~G~~--~-~~~~G~-~~~~l~~~l~~  106 (112)
T 3d6i_A           79 YFIIIHKGTI--L-KELSGA-DPKEYVSLLED  106 (112)
T ss_dssp             EEEEEETTEE--E-EEECSC-CHHHHHHHHHH
T ss_pred             EEEEEECCEE--E-EEecCC-CHHHHHHHHHH
Confidence            9999975322  1 123344 34457777764

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=96.32  E-value=0.0016  Score=59.93  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=35.0

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH  189 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~  189 (554)
                      +++.+|+|++.||+||+++.|.++++.+.+   ++.|..++..
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~---~v~~~~~p~~   61 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA---GTDIGKMHIT   61 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH---TSCCEEEECC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh---CCeEEEEecc
Confidence            578999999999999999999999999988   3677777765

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=96.31  E-value=0.029  Score=45.94  Aligned_cols=97  Identities=8%  Similarity=0.067  Sum_probs=62.3

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH----hh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN----AF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~----a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++++.+..  ..++++++.|....-+..+....    .. .+ ..+.|..++++. .+.+++++|+|.+ .||
T Consensus         7 v~~l~~~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~-~~v~~~~vd~~~-~~~~~~~~~~v~~-~Pt   81 (111)
T 2pu9_C            7 VTEVNKDTFWPIVKA--AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEY-LDVIFLKLDCNQ-ENKTLAKELGIRV-VPT   81 (111)
T ss_dssp             EEEECTTTHHHHHTT--CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEECSS-TTHHHHHHHCCSB-SSE
T ss_pred             cEEechHHHHHHHHh--cCCCEEEEEEECCcCHhHHHHCHHHHHHHHHC-CCeEEEEEecCc-chHHHHHHcCCCe-eeE
Confidence            566788899888853  24677777775544333322221    11 33 358999998752 4678999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+++..  . ....|. ....|.++|+.
T Consensus        82 ~~~~~~G~~--~-~~~~G~-~~~~l~~~l~~  108 (111)
T 2pu9_C           82 FKILKENSV--V-GEVTGA-KYDKLLEAIQA  108 (111)
T ss_dssp             EEEESSSSE--E-EEEESS-CHHHHHHHHHH
T ss_pred             EEEEeCCcE--E-EEEcCC-CHHHHHHHHHH
Confidence            998875432  1 123343 46678887764

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=96.31  E-value=0.026  Score=46.81  Aligned_cols=95  Identities=11%  Similarity=0.225  Sum_probs=62.8

Q ss_pred             cccCCc-ccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHh-----hccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        241 IVPLSA-TNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINA-----FKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       241 v~~~t~-~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a-----~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      +..+++ +++++.++..  .++++++.|....-+..+.....     ..+  .+.|..++++  .+.+++++|+|.+ .|
T Consensus        15 v~~l~~~~~~~~~l~~~--~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~--~~~~~~~~~~v~~-~P   87 (117)
T 2xc2_A           15 LIELKQDGDLESLLEQH--KNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVD--KLEETARKYNISA-MP   87 (117)
T ss_dssp             EEECCSTTHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETT--TSHHHHHHTTCCS-SS
T ss_pred             eEEeCCHHHHHHHHHhC--CCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECC--ccHHHHHHcCCCc-cc
Confidence            344555 8888888642  56777777765444433322221     123  7889999887  6889999999997 99


Q ss_pred             eEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        315 SLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      |+++|+++.. .  ....| .+...|.++|+.
T Consensus        88 t~~~~~~G~~-~--~~~~G-~~~~~l~~~l~~  115 (117)
T 2xc2_A           88 TFIAIKNGEK-V--GDVVG-ASIAKVEDMIKK  115 (117)
T ss_dssp             EEEEEETTEE-E--EEEES-SCHHHHHHHHHH
T ss_pred             eEEEEeCCcE-E--EEEeC-CCHHHHHHHHHH
Confidence            9999975422 1  12344 567778888764

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=96.23  E-value=0.021  Score=47.76  Aligned_cols=98  Identities=9%  Similarity=0.036  Sum_probs=60.2

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEE
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF  319 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvf  319 (554)
                      +.+++++.+..   .++++++.|....-+..+...     .+..+ +.+.|..++++  .+.+++++|+|.+ .|++++|
T Consensus        11 ~~~~~~~~~~~---~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~--~~~~~~~~~~i~~-~Pt~~~~   83 (118)
T 2f51_A           11 THEALLNRIKE---APGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVD--KNGNAADAYGVSS-IPALFFV   83 (118)
T ss_dssp             CHHHHHHHHHH---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETT--TCHHHHHHTTCCS-SSEEEEE
T ss_pred             CHHHHHHHHHh---CCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECC--CCHHHHHhcCCCC-CCEEEEE
Confidence            55677654432   467777777554433322222     11234 78999999987  6889999999997 9999999


Q ss_pred             eCCCC-CCCceeecCCCChhHHHhHHhcCCCc
Q psy16770        320 KEDKD-RPSASITMNSIPVPTLQDITDNNPYL  350 (554)
Q Consensus       320 k~~~~-~~~~~i~~~~~~~~~l~~fi~~~~~~  350 (554)
                      +++.. ........|. ....|.+.+..+..+
T Consensus        84 ~~~~~~G~~~~~~~G~-~~~~l~~~~~~~~~~  114 (118)
T 2f51_A           84 KKEGNEIKTLDQFVGA-DVSRIKADIEKFKHH  114 (118)
T ss_dssp             EEETTEEEEEEEEESC-CHHHHHHHHHHHC--
T ss_pred             eCCCCcceEEEeecCC-CHHHHHHHHHHhhhc
Confidence            76211 1111123444 445688888776544

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=96.20  E-value=0.027  Score=49.49  Aligned_cols=97  Identities=12%  Similarity=0.134  Sum_probs=62.9

Q ss_pred             ccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEE
Q psy16770        242 VPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLL  317 (554)
Q Consensus       242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlv  317 (554)
                      .+.+.+++++.+...  .++++++.|....-+..+....    .....+.+.|+.++++  .+.+++++|+|.+ .|+++
T Consensus        16 ~l~~~~~~~~~~~~~--~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~--~~~~l~~~~~v~~-~Pt~~   90 (153)
T 2wz9_A           16 EVGSAGQFEELLRLK--AKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAE--GVPEVSEKYEISS-VPTFL   90 (153)
T ss_dssp             EECSHHHHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT--TSHHHHHHTTCCS-SSEEE
T ss_pred             EcCCHHHHHHHHHhc--CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECC--CCHHHHHHcCCCC-CCEEE
Confidence            333468888888642  3677777775544333322221    1122357999999987  6889999999997 99999


Q ss_pred             EEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        318 IFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       318 vfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +|+++ . .. ....| .....|.+||+..
T Consensus        91 ~~~~G-~-~~-~~~~G-~~~~~l~~~i~~~  116 (153)
T 2wz9_A           91 FFKNS-Q-KI-DRLDG-AHAPELTKKVQRH  116 (153)
T ss_dssp             EEETT-E-EE-EEEES-SCHHHHHHHHHHH
T ss_pred             EEECC-E-EE-EEEeC-CCHHHHHHHHHHH
Confidence            99843 2 11 12334 4566788888754

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=96.19  E-value=0.012  Score=49.12  Aligned_cols=94  Identities=11%  Similarity=0.058  Sum_probs=62.3

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHh---hccCCceEEEEEEccCCCCh----hHHhHhCCCCCCce
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINA---FKHRTTIVFGVIVYDQEDSS----SVFQRFKVPGDKDS  315 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a---~~~~~~v~Fg~v~~~~~~~~----~l~~k~~i~~~~Pt  315 (554)
                      +.|.+++++.++    .+++++++|...--++.+.....   +...+++.|+++|++  ...    +++++|+|.+..|+
T Consensus        11 i~s~e~f~~ii~----~~~~vvi~khatwCgpc~~~~~~~e~~~~~~~v~~~~vdVd--e~r~~Sn~IA~~~~V~h~sPq   84 (112)
T 3iv4_A           11 LSSIDQFEQVIE----ENKYVFVLKHSETCPISANAYDQFNKFLYERDMDGYYLIVQ--QERDLSDYIAKKTNVKHESPQ   84 (112)
T ss_dssp             CCSHHHHHHHHH----HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTCCEEEEEGG--GGHHHHHHHHHHHTCCCCSSE
T ss_pred             cCCHHHHHHHHh----cCCCEEEEEECCcCHhHHHHHHHHHHHhccCCceEEEEEee--cCchhhHHHHHHhCCccCCCe
Confidence            346688988885    37888888865443333322221   111368999999987  453    48999999965899


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHH
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDIT  344 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi  344 (554)
                      +++|+++..  ....+.+.++...|.+.+
T Consensus        85 ~il~k~G~~--v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           85 AFYFVNGEM--VWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             EEEEETTEE--EEEEEGGGCSHHHHHHHT
T ss_pred             EEEEECCEE--EEEeeccccCHHHHHHhh
Confidence            999997543  222456777777776544

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=96.17  E-value=0.031  Score=48.15  Aligned_cols=106  Identities=10%  Similarity=0.137  Sum_probs=59.7

Q ss_pred             ccccccchhhhhhcCCCCceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccc
Q psy16770        351 TLPRISSQSMLDAVCPVKKLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEI  429 (554)
Q Consensus       351 ~v~~lt~~~~~~~~c~~~~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~  429 (554)
                      .+.+++.+++...+...++ .+|.|. +....+....+.+.+++++  +.+ .+.|+.+|++...++++.+-.       
T Consensus        34 ~v~~l~~~~~~~~~~~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~--~~~-~v~~~~vd~~~~~~l~~~~~v-------  102 (140)
T 1v98_A           34 WVVEADEKGFAQEVAGAPL-TLVDFFAPWCGPCRLVSPILEELARD--HAG-RLKVVKVNVDEHPGLAARYGV-------  102 (140)
T ss_dssp             ---------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHH--TTT-TEEEEEEETTTCHHHHHHTTC-------
T ss_pred             ccccCCHHHHHHHHHcCCC-EEEEEECCCCHHHHHHHHHHHHHHHH--ccC-ceEEEEEECCCCHHHHHHCCC-------
Confidence            4455665555544432334 555554 4556677788899999988  864 499999999999999988711       


Q ss_pred             cceEEEEEEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCC
Q psy16770        430 SLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDP  478 (554)
Q Consensus       430 ~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~  478 (554)
                       ..+|.+.... ++.....+.|.         .+.+.|.+||+++++|+
T Consensus       103 -~~~Pt~~~~~-~G~~~~~~~G~---------~~~~~l~~~i~~~l~~~  140 (140)
T 1v98_A          103 -RSVPTLVLFR-RGAPVATWVGA---------SPRRVLEERLRPYLEGR  140 (140)
T ss_dssp             -CSSSEEEEEE-TTEEEEEEESC---------CCHHHHHHHHHHHHTCC
T ss_pred             -CccCEEEEEe-CCcEEEEEeCC---------CCHHHHHHHHHHHHccC
Confidence             2334332222 33222233442         36789999999998764

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=96.16  E-value=0.031  Score=47.08  Aligned_cols=99  Identities=9%  Similarity=0.052  Sum_probs=63.4

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecC-------CchhHHHHH-----HhhccCCceEEEEEEccC-----CCChhH
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRS-------LPVRLRYLI-----NAFKHRTTIVFGVIVYDQ-----EDSSSV  303 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~-------~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~-----~~~~~l  303 (554)
                      +...+.+++++.+...  .++++++.|...       --++.+...     .+..+.+.+.|..++++.     ..+..+
T Consensus         7 v~~~~~~~~~~~~~~~--~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~   84 (123)
T 1wou_A            7 VSVSGFEEFHRAVEQH--NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDF   84 (123)
T ss_dssp             EEEESHHHHHHHHHTT--TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHH
T ss_pred             EEeccHHHHHHHHHHh--CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHH
Confidence            3445677788777542  367888877665       433332222     122455689999998831     257789


Q ss_pred             HhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        304 FQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       304 ~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +++|+|.+ .||+++|++. ..   ...........|.+||+.
T Consensus        85 ~~~~~i~~-~Pt~~~~~~~-~~---~~g~~~~~~~~l~~~i~~  122 (123)
T 1wou_A           85 RKNLKVTA-VPTLLKYGTP-QK---LVESECLQANLVEMLFSE  122 (123)
T ss_dssp             HHHHCCCS-SSEEEETTSS-CE---EEGGGGGCHHHHHHHHHC
T ss_pred             HHHCCCCe-eCEEEEEcCC-ce---EeccccCCHHHHHHHHhc
Confidence            99999997 9999999762 21   222233456678888764

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=96.09  E-value=0.01  Score=55.73  Aligned_cols=88  Identities=13%  Similarity=0.184  Sum_probs=63.9

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      ++++++.|| ++||+.|....+.+.+...+++..|+.+..|.++.                            +.++++.
T Consensus        52 GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~  131 (216)
T 3sbc_A           52 GKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRD  131 (216)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHH
T ss_pred             CCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHHHHH
Confidence            467888899 99999999999999999999987789998888764                            3478999


Q ss_pred             hCCcC-----CCCcceec-cCCeEE--EEe--CCcccHHHHHHHHHH
Q psy16770        198 LGVGS-----QLPQIALL-TDGRTS--FFK--EPSFSVQKMVEFFRL  234 (554)
Q Consensus       198 ~~v~~-----~~Pti~~~-~~g~~~--~y~--~g~~~~~~i~~fl~~  234 (554)
                      |||-.     .++.+.++ .+|.+.  ..+  .-.|+.++++..+..
T Consensus       132 YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~A  178 (216)
T 3sbc_A          132 YGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEA  178 (216)
T ss_dssp             HTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             cCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            98832     13444444 677652  222  122578888776654

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=96.05  E-value=0.022  Score=48.92  Aligned_cols=102  Identities=13%  Similarity=0.151  Sum_probs=63.8

Q ss_pred             CccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        239 KLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       239 ~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      .++.+.+.+++++.+......++++++.|....-+..+....    .....+.+.|..++++  .+.+++++|+|.+ .|
T Consensus        25 ~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~--~~~~~~~~~~v~~-~P  101 (139)
T 3d22_A           25 NVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVD--ELSDFSASWEIKA-TP  101 (139)
T ss_dssp             TCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT--TSHHHHHHTTCCE-ES
T ss_pred             cEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCc--ccHHHHHHcCCCc-cc
Confidence            334444678888877532124677777775544333222221    1111257999999987  6889999999997 99


Q ss_pred             eEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        315 SLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      ++++|+++..  . ....|. +...|.++|+..
T Consensus       102 t~~~~~~G~~--~-~~~~G~-~~~~l~~~l~~~  130 (139)
T 3d22_A          102 TFFFLRDGQQ--V-DKLVGA-NKPELHKKITAI  130 (139)
T ss_dssp             EEEEEETTEE--E-EEEESC-CHHHHHHHHHHH
T ss_pred             EEEEEcCCeE--E-EEEeCC-CHHHHHHHHHHH
Confidence            9999965322  1 223444 667788888643

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=95.97  E-value=0.045  Score=45.81  Aligned_cols=98  Identities=8%  Similarity=0.071  Sum_probs=62.8

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      +..++++++++.+..  ..++++++.|....-++.+....    ..+....+.|..++++. .+.+++++|+|.+ .||+
T Consensus        20 v~~l~~~~~~~~~~~--~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~-~~~~~~~~~~v~~-~Pt~   95 (124)
T 1faa_A           20 VTEVNKDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQ-ENKTLAKELGIRV-VPTF   95 (124)
T ss_dssp             EEEECTTTHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSS-TTHHHHHHHCCSS-SSEE
T ss_pred             eEEecchhHHHHHHh--cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCc-chHHHHHHcCCCe-eeEE
Confidence            566788888888764  25677777776544443332221    11112358899998752 3678999999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      ++|+++..  . ....|. ..+.|.++|+.
T Consensus        96 ~~~~~G~~--~-~~~~G~-~~~~l~~~i~~  121 (124)
T 1faa_A           96 KILKENSV--V-GEVTGA-KYDKLLEAIQA  121 (124)
T ss_dssp             EEEETTEE--E-EEEESS-CHHHHHHHHHH
T ss_pred             EEEeCCcE--E-EEEcCC-CHHHHHHHHHH
Confidence            99976432  1 123343 36778887764

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=95.95  E-value=0.019  Score=54.28  Aligned_cols=85  Identities=15%  Similarity=0.167  Sum_probs=56.9

Q ss_pred             CCcEEEEEEccc-ccccc-----cchHHHHHHHHHhCCCCEEEEEEEecC-----------------------cHHHHHH
Q psy16770        147 TTPHLILFYSDW-CFACL-----QVEPIFKKLMDELSPLGVGFFTVHVHN-----------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fya~w-C~~C~-----~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------------------~~~l~~~  197 (554)
                      +++++|.||+.| |+.|.     ...|.+.+.   +  .|+.+..|.++.                       +..+++.
T Consensus        48 Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~vak~  122 (224)
T 3keb_A           48 HTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PHLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHKR  122 (224)
T ss_dssp             TCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TTSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTHHHH
T ss_pred             CCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CCCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchHHHHH
Confidence            468899999888 99999     767777665   4  357777776653                       2467778


Q ss_pred             hCCcC--------CCCcceec-cCCeEEEEe-----CCcccHHHHHHHHHHhC
Q psy16770        198 LGVGS--------QLPQIALL-TDGRTSFFK-----EPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       198 ~~v~~--------~~Pti~~~-~~g~~~~y~-----~g~~~~~~i~~fl~~~~  236 (554)
                      ||+..        ..|+..++ ++|++....     .+..+.+++.+.+....
T Consensus       123 yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l~  175 (224)
T 3keb_A          123 YGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGE  175 (224)
T ss_dssp             TTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHHH
T ss_pred             hCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHhh
Confidence            88752        04777777 578764322     13346677777776543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=95.95  E-value=0.2  Score=53.50  Aligned_cols=172  Identities=10%  Similarity=0.062  Sum_probs=107.2

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeE--EEEeCCcc-
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRT--SFFKEPSF-  223 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~--~~y~~g~~-  223 (554)
                      .+++.+.++.+.|..|..+....++++.. .+ ++.+...|  ...        .. .|++.+.++|+.  +.|.|-+. 
T Consensus        18 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-s~-~i~~~~~~--~~~--------~~-~p~~~~~~~~~~~~i~f~g~p~g   84 (521)
T 1hyu_A           18 TKPVELIATLDDSAKSAEIKELLAEIAEL-SD-KVTFKEDN--TLP--------VR-KPSFLITNPGSQQGPRFAGSPLG   84 (521)
T ss_dssp             CSCEEEEEECCSSHHHHHHHHHHHHHHTT-CT-TEEEEECT--TSS--------SC-SSEEEEECTTCCCSCEEESCCCG
T ss_pred             CCCEEEEEEeCCCcchHHHHHHHHHHHHh-CC-ceEEEEcC--Ccc--------cC-CCEEEEecCCCcceEEEeccCcc
Confidence            34666777788899999888888887654 33 36663322  110        43 899999877743  67776432 


Q ss_pred             -cHHHHHHHHHHhCCCCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccC
Q psy16770        224 -SVQKMVEFFRLKLPYKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQ  297 (554)
Q Consensus       224 -~~~~i~~fl~~~~~~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~  297 (554)
                       ....++.-+....+.+  ..++++.++...+   .+.+..+..|....-++.....     .+.. .+++.|..++.+ 
T Consensus        85 ~e~~s~~~~l~~~~~~~--~~~~~~~~~~i~~---~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~-~~~v~~~~vd~~-  157 (521)
T 1hyu_A           85 HEFTSLVLALLWTGGHP--SKEAQSLLEQIRD---IDGDFEFETYYSLSCHNCPDVVQALNLMAVL-NPRIKHTAIDGG-  157 (521)
T ss_dssp             GGHHHHHHHHHHHTTCC--CCSCHHHHHHHHH---CCSCEEEEEEECTTCSSHHHHHHHHHHHHHH-CTTEEEEEEETT-
T ss_pred             hhHHHHHHHHHhhcCCC--CCCCHHHHHHHHh---cCCCcceEEEECCCCcCcHHHHHHHHHHHhH-cCceEEEEEech-
Confidence             3344554454555444  2345555555432   2345556666443333322221     1223 348999999877 


Q ss_pred             CCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        298 EDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       298 ~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                       ..++++++|+|.+ .|++++  + .+    .+..+.++...|.+|+...
T Consensus       158 -~~~~~~~~~~i~s-vPt~~i--~-g~----~~~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          158 -TFQNEITERNVMG-VPAVFV--N-GK----EFGQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             -TCHHHHHHTTCCS-SSEEEE--T-TE----EEEESCCCHHHHHHHHCCS
T ss_pred             -hhHHHHHHhCCCc-cCEEEE--C-CE----EEecCCCCHHHHHHHHhhc
Confidence             7899999999997 999987  2 22    2344778888999998764

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=95.90  E-value=0.047  Score=47.84  Aligned_cols=99  Identities=15%  Similarity=0.088  Sum_probs=63.9

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEE
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLL  317 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlv  317 (554)
                      ..+.+++++.+..  ..++++++.|...--++.+...     .+..+.+.+.|+.++++  .+.+++++|+|.+ .||++
T Consensus         8 i~~~~~~~~~i~~--~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d--~~~~l~~~~~v~~-~Pt~~   82 (149)
T 3gix_A            8 LTSKKEVDQAIKS--TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVD--QTAVYTQYFDISY-IPSTV   82 (149)
T ss_dssp             ECSHHHHHHHHHH--CCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETT--TCCHHHHHTTCCS-SSEEE
T ss_pred             cCCHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECC--cCHHHHHHcCCCc-cCeEE
Confidence            3466778877752  2467778877544333322221     22245667999999987  6889999999997 99999


Q ss_pred             EEeCCCCCC------CceeecC-CCChhHHHhHHhc
Q psy16770        318 IFKEDKDRP------SASITMN-SIPVPTLQDITDN  346 (554)
Q Consensus       318 vfk~~~~~~------~~~i~~~-~~~~~~l~~fi~~  346 (554)
                      +|+++....      ......+ ..+.+.|.++|+.
T Consensus        83 ~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~  118 (149)
T 3gix_A           83 FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEV  118 (149)
T ss_dssp             EEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHH
T ss_pred             EEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHH
Confidence            998743210      0012345 5677778877764

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=95.76  E-value=0.064  Score=45.82  Aligned_cols=101  Identities=10%  Similarity=0.050  Sum_probs=65.1

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH------H--hhccCCceEEEEEEccC--CCChhHHhHhCCCCC
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI------N--AFKHRTTIVFGVIVYDQ--EDSSSVFQRFKVPGD  312 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~------~--a~~~~~~v~Fg~v~~~~--~~~~~l~~k~~i~~~  312 (554)
                      ..+.++++..++..  .++++++.|....-+..+...      .  +..+ ..+.|..++++.  ..+.+++++|+|.+ 
T Consensus        16 ~~~~~~~~~~l~~~--~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~-~~~~~~~vd~~~~~~~~~~l~~~~~v~~-   91 (134)
T 2fwh_A           16 IKTVDELNQALVEA--KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKAL-ADTVLLQANVTANDAQDVALLKHLNVLG-   91 (134)
T ss_dssp             CCSHHHHHHHHHHH--TTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHT-TTSEEEEEECTTCCHHHHHHHHHTTCCS-
T ss_pred             ecCHHHHHHHHHHh--cCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHh-cCcEEEEEeCCCCcchHHHHHHHcCCCC-
Confidence            44567777777543  367777777654444433322      1  1133 358999998853  13567999999997 


Q ss_pred             CceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        313 KDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       313 ~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      .|++++|..++.........|..+.+.|.++++..
T Consensus        92 ~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~  126 (134)
T 2fwh_A           92 LPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR  126 (134)
T ss_dssp             SSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence            99999995433322112467788888899988754

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=95.64  E-value=0.035  Score=46.19  Aligned_cols=96  Identities=15%  Similarity=0.137  Sum_probs=62.2

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCC-----ceEEEEEEccCCCChhHHhHhCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRT-----TIVFGVIVYDQEDSSSVFQRFKVP  310 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~-----~v~Fg~v~~~~~~~~~l~~k~~i~  310 (554)
                      +..++.+++++.+.   ..++++++.|....-+..+...     .+..+.+     .+.|+.++++.  + .+++  +|.
T Consensus         9 v~~l~~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~--~-~~~~--~v~   80 (121)
T 2djj_A            9 VTVVVAKNYNEIVL---DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA--N-DVPD--EIQ   80 (121)
T ss_dssp             SEECCTTTTTTSSS---CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT--S-CCSS--CCS
T ss_pred             eEEecccCHHHHhh---cCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcc--c-cccc--ccC
Confidence            55677788877653   2466777777544333222211     1223444     79999999873  2 2555  898


Q ss_pred             CCCceEEEEeCCCCC-CCceeecCCCChhHHHhHHhcC
Q psy16770        311 GDKDSLLIFKEDKDR-PSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       311 ~~~Ptlvvfk~~~~~-~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      + .||+++|+++... .  ..+.+..+.+.|.+||+.+
T Consensus        81 ~-~Pt~~~~~~~~~~~~--~~~~G~~~~~~l~~~i~~~  115 (121)
T 2djj_A           81 G-FPTIKLYPAGAKGQP--VTYSGSRTVEDLIKFIAEN  115 (121)
T ss_dssp             S-SSEEEEECSSCTTSC--CCCCCCSCHHHHHHHHHHT
T ss_pred             c-CCeEEEEeCcCCCCc--eEecCCCCHHHHHHHHHhc
Confidence            7 9999999875442 2  3456778888999999865

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=95.51  E-value=0.034  Score=47.01  Aligned_cols=102  Identities=9%  Similarity=0.029  Sum_probs=63.3

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHh-------h-ccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINA-------F-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a-------~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      .+++.++++.+......++++++.|....-+..+.....       . .+...+.+..++++...+..++++|+|.+ .|
T Consensus        10 ~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~-~P   88 (130)
T 2kuc_A           10 AFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHA-YP   88 (130)
T ss_dssp             CCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCS-SC
T ss_pred             CcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCC-CC
Confidence            346677777664321246777777755433332222111       1 22346778888776434678999999997 99


Q ss_pred             eEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        315 SLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      ++++|.++....  ....|..+...|.++|+..
T Consensus        89 t~~~~d~~G~~~--~~~~G~~~~~~l~~~l~~~  119 (130)
T 2kuc_A           89 TLLFINSSGEVV--YRLVGAEDAPELLKKVKLG  119 (130)
T ss_dssp             EEEEECTTSCEE--EEEESCCCHHHHHHHHHHH
T ss_pred             EEEEECCCCcEE--EEecCCCCHHHHHHHHHHH
Confidence            999995433321  2356777888888888754

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=95.49  E-value=0.05  Score=46.55  Aligned_cols=99  Identities=6%  Similarity=0.031  Sum_probs=61.1

Q ss_pred             cccCC-cccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-cc--CCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        241 IVPLS-ATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KH--RTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       241 v~~~t-~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~--~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      +..++ .+++++.++..  .++++++.|....-++.+.....+ ++  .-.+.|..++++  .+.+++++|+|.+ .||+
T Consensus        22 v~~l~~~~~~~~~l~~~--~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~--~~~~l~~~~~v~~-~Pt~   96 (133)
T 3cxg_A           22 YIELKNTGSLNQVFSST--QNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYYVTLVDIDVD--IHPKLNDQHNIKA-LPTF   96 (133)
T ss_dssp             EEECCCTTHHHHHHTC---CCSEEEEEEECTTCHHHHHTHHHHHGGGGTEECEEEEEETT--TCHHHHHHTTCCS-SSEE
T ss_pred             EEEecChhHHHHHHHhc--CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCEEEEEEecc--chHHHHHhcCCCC-CCEE
Confidence            33444 47888888642  356778877554444333322222 11  115788888876  6889999999997 9999


Q ss_pred             EEEe--CCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        317 LIFK--EDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       317 vvfk--~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      ++|+  ++..... ....|. +...|.++|+.
T Consensus        97 ~~~~~~~g~g~~~-~~~~G~-~~~~l~~~l~~  126 (133)
T 3cxg_A           97 EFYFNLNNEWVLV-HTVEGA-NQNDIEKAFQK  126 (133)
T ss_dssp             EEEEEETTEEEEE-EEEESC-CHHHHHHHHHH
T ss_pred             EEEEecCCCeEEE-EEEcCC-CHHHHHHHHHH
Confidence            9996  4321121 123344 67778888764

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=95.45  E-value=0.11  Score=43.55  Aligned_cols=92  Identities=15%  Similarity=0.138  Sum_probs=63.1

Q ss_pred             CceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEe--cccchHHHHhhCCCCCCccccceEEEEEEecCCC-
Q psy16770        368 KKLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVF--IEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKK-  443 (554)
Q Consensus       368 ~~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd--~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  443 (554)
                      ++..+|.|. .....+......+.+++++  ++ +.+.|+.+|  .+...++++.+       .. ..+|.++..+.++ 
T Consensus        26 ~k~~lv~f~a~wC~~C~~~~~~l~~~~~~--~~-~~v~~~~v~~~~d~~~~~~~~~-------~v-~~~Pt~~~~~~~G~   94 (126)
T 2l57_A           26 GIPTIIMFKTDTCPYCVEMQKELSYVSKE--RE-GKFNIYYARLEEEKNIDLAYKY-------DA-NIVPTTVFLDKEGN   94 (126)
T ss_dssp             SSCEEEEEECSSCHHHHHHHHHHHHHHHH--SS-SSCEEEEEETTSSHHHHHHHHT-------TC-CSSSEEEEECTTCC
T ss_pred             CCcEEEEEECCCCccHHHHHHHHHHHHHH--hc-CCeEEEEEeCCCCchHHHHHHc-------CC-cceeEEEEECCCCC
Confidence            345555554 4556677788889999988  86 469999999  88888888887       11 3556555555444 


Q ss_pred             eeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770        444 IKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN  480 (554)
Q Consensus       444 ~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~  480 (554)
                      ..+ .+.|.         .+.+.|.++|++.+.....
T Consensus        95 ~~~-~~~G~---------~~~~~l~~~l~~~~~~~~~  121 (126)
T 2l57_A           95 KFY-VHQGL---------MRKNNIETILNSLGVKEGH  121 (126)
T ss_dssp             EEE-EEESC---------CCHHHHHHHHHHHCCCCCC
T ss_pred             EEE-EecCC---------CCHHHHHHHHHHHhccccc
Confidence            333 23442         4678999999998877654

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=95.23  E-value=0.011  Score=53.57  Aligned_cols=54  Identities=15%  Similarity=0.247  Sum_probs=41.6

Q ss_pred             CcEEEEEEccccccccc-chHHHHHHHHHhCCCCE-EEEEEEecC---cHHHHHHhCCc
Q psy16770        148 TPHLILFYSDWCFACLQ-VEPIFKKLMDELSPLGV-GFFTVHVHN---EQGLARRLGVG  201 (554)
Q Consensus       148 ~~~lV~Fya~wC~~C~~-l~p~~~~~a~~l~~~~v-~~~~Vd~~~---~~~l~~~~~v~  201 (554)
                      ..+|+.|++.||+.|.. -.|.|.+.+++++..|+ .+..|.++.   ....+++.++.
T Consensus        49 ~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l~  107 (176)
T 4f82_A           49 RVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTA  107 (176)
T ss_dssp             EEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCT
T ss_pred             eEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence            35666777999999999 99999999999987778 888887765   33445555543

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=95.22  E-value=0.019  Score=48.42  Aligned_cols=92  Identities=20%  Similarity=0.230  Sum_probs=58.0

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecC-------CchhHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEE
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRS-------LPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLL  317 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~-------~~~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlv  317 (554)
                      +.+++++.+......++++++.|...       ..+.+...  +..+ ..+.|..++++  .+.+++++|+|.. .|+++
T Consensus        21 ~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~--~~~~-~~v~~~~v~~~--~~~~~~~~~~v~~-~Pt~~   94 (130)
T 1wmj_A           21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEY--AKKF-PGAVFLKVDVD--ELKEVAEKYNVEA-MPTFL   94 (130)
T ss_dssp             SSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHH--HHHC-TTBCCEECCTT--TSGGGHHHHTCCS-SCCCC
T ss_pred             CHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHH--HHHC-CCCEEEEEecc--chHHHHHHcCCCc-cceEE
Confidence            55788888865323467777777332       22222222  2233 36888888876  6789999999997 99999


Q ss_pred             EEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        318 IFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       318 vfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      +|+++.. . . ...+ .+.+.|.++|+.
T Consensus        95 ~~~~g~~-~-~-~~~g-~~~~~l~~~l~~  119 (130)
T 1wmj_A           95 FIKDGAE-A-D-KVVG-ARKDDLQNTIVK  119 (130)
T ss_dssp             BCTTTTC-C-B-CCCT-TCTTTHHHHHHH
T ss_pred             EEeCCeE-E-E-EEeC-CCHHHHHHHHHH
Confidence            9965432 1 1 2233 455667777764

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=95.19  E-value=0.039  Score=51.86  Aligned_cols=89  Identities=16%  Similarity=0.310  Sum_probs=63.4

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      ++.+++.|| ++||+.|......|.+...+++..|+.+..|.++.                            +..+|+.
T Consensus        56 GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~  135 (219)
T 3tue_A           56 GKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARS  135 (219)
T ss_dssp             TSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHH
T ss_pred             CCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhHHHHhhhhHHhcCccccccccccCcccHHHHH
Confidence            457888899 89999999999999999999998889999888764                            3468889


Q ss_pred             hCCcC---CCC--cceec-cCCeEE--EEe--CCcccHHHHHHHHHHh
Q psy16770        198 LGVGS---QLP--QIALL-TDGRTS--FFK--EPSFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~~---~~P--ti~~~-~~g~~~--~y~--~g~~~~~~i~~fl~~~  235 (554)
                      ||+-.   .++  .+.++ .+|.+.  ..+  .-.++.++++..++..
T Consensus       136 yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~aL  183 (219)
T 3tue_A          136 YGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAF  183 (219)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             cCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            98742   122  23333 677652  222  1225778887777643

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=95.18  E-value=0.089  Score=48.74  Aligned_cols=46  Identities=20%  Similarity=0.203  Sum_probs=32.3

Q ss_pred             CCCCCCcEEEEEEcccccccccchHHH-HHHHHHhC-CCCEEEEEEEe
Q psy16770        143 PKSYTTPHLILFYSDWCFACLQVEPIF-KKLMDELS-PLGVGFFTVHV  188 (554)
Q Consensus       143 ~~~~~~~~lV~Fya~wC~~C~~l~p~~-~~~a~~l~-~~~v~~~~Vd~  188 (554)
                      .....++.+|+|+...|++|+++.+.. ..+.+.+- ..+++|...+.
T Consensus        25 G~~~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~   72 (202)
T 3gha_A           25 GKDDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNV   72 (202)
T ss_dssp             SCTTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEEC
T ss_pred             cCCCCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEec
Confidence            334566789999999999999998875 45555553 22477766643

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=95.13  E-value=0.061  Score=45.64  Aligned_cols=96  Identities=15%  Similarity=0.089  Sum_probs=58.3

Q ss_pred             ccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH-------hhccCCceEEEEEEccC-CCChhHHhHhCC---CCCCce
Q psy16770        247 TNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN-------AFKHRTTIVFGVIVYDQ-EDSSSVFQRFKV---PGDKDS  315 (554)
Q Consensus       247 ~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~-------a~~~~~~v~Fg~v~~~~-~~~~~l~~k~~i---~~~~Pt  315 (554)
                      +++++.+......++++++.|...--+..+....       +..+.+++.|..++++. ..+.+++++|+|   .+ .|+
T Consensus        16 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~-~Pt   94 (133)
T 3fk8_A           16 TQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDG-IPA   94 (133)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGC-SSE
T ss_pred             hHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCc-cce
Confidence            4566555433245778888775443333222211       11334678999998821 268899999999   87 999


Q ss_pred             EEEEeCCCCCCCceeecC-------CCChhHHHhHHh
Q psy16770        316 LLIFKEDKDRPSASITMN-------SIPVPTLQDITD  345 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~-------~~~~~~l~~fi~  345 (554)
                      +++|..++...  ....+       .++.+.+.+|++
T Consensus        95 ~~~~d~~G~~~--~~~~g~~~~~~~~~~~~~l~~~l~  129 (133)
T 3fk8_A           95 VVVVNSDGKVR--YTTKGGELANARKMSDQGIYDFFA  129 (133)
T ss_dssp             EEEECTTSCEE--EECCSCTTTTGGGSCHHHHHHHHH
T ss_pred             EEEECCCCCEE--EEecCCcccccccCCHHHHHHHHH
Confidence            99995433311  11222       456777888775

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=95.08  E-value=0.013  Score=61.44  Aligned_cols=78  Identities=12%  Similarity=0.032  Sum_probs=52.7

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccC---C-----ceEEEEEEccCCCChhHHhHh
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHR---T-----TIVFGVIVYDQEDSSSVFQRF  307 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~---~-----~v~Fg~v~~~~~~~~~l~~k~  307 (554)
                      +..++.+++++.+..  ...+++++.|...--++.+..     ..+..+.   +     .+.|+.++++  .+.+++++|
T Consensus        25 V~~Lt~~~F~~~l~~--~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d--~~~~la~~y  100 (470)
T 3qcp_A           25 VVDLSGDDFSRVHRV--APLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCA--SEVDLCRKY  100 (470)
T ss_dssp             EEECSCSCGGGTCTT--GGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETT--TCHHHHHHT
T ss_pred             cEECCHHHHHHHHHh--CCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECC--CCHHHHHHc
Confidence            667788899888754  234677776644332222211     1122333   2     5999999998  688999999


Q ss_pred             CCCCCCceEEEEeCCC
Q psy16770        308 KVPGDKDSLLIFKEDK  323 (554)
Q Consensus       308 ~i~~~~Ptlvvfk~~~  323 (554)
                      +|.+ +||+++|+++.
T Consensus       101 ~V~~-~PTlilf~~gg  115 (470)
T 3qcp_A          101 DINF-VPRLFFFYPRD  115 (470)
T ss_dssp             TCCS-SCEEEEEEESS
T ss_pred             CCCc-cCeEEEEECCC
Confidence            9997 99999997643

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=94.04  E-value=0.0039  Score=50.42  Aligned_cols=96  Identities=14%  Similarity=0.158  Sum_probs=56.7

Q ss_pred             ccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        242 VPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      ..++.+++.+.+.   ..+++++++|....-+......     .+..+.+.+.|..++++  .+.+++++|++.. .|++
T Consensus         4 ~~l~~~~~~~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~v~~-~Pt~   77 (106)
T 2yj7_A            4 IEVTDENFEQEVL---KSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVD--ENPNTAAQYGIRS-IPTL   77 (106)
Confidence            3455666654442   2455666666433222211111     11134457888888876  6788999999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      ++|+++.. .  ....|..+.+.|.+|++.
T Consensus        78 ~~~~~g~~-~--~~~~g~~~~~~l~~~l~~  104 (106)
T 2yj7_A           78 LLFKNGQV-V--DRLVGAQPKEALKERIDK  104 (106)
Confidence            99964322 1  133455566667777653

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=94.96  E-value=0.087  Score=44.29  Aligned_cols=99  Identities=12%  Similarity=0.036  Sum_probs=61.3

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..+|.+++.+.+... +.++++++.|....-++.+...     .+.++ ..++|..++++.     .+++|+|.. .||
T Consensus         5 v~~it~~~f~~~v~~~-~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~-~~v~f~kvd~d~-----~~~~~~v~~-~PT   76 (118)
T 3evi_A            5 LREISGNQYVNEVTNA-EEDVWVIIHLYRSSIPMCLLVNQHLSLLARKF-PETKFVKAIVNS-----CIQHYHDNC-LPT   76 (118)
T ss_dssp             CEECCGGGHHHHTTTC-CTTCEEEEEEECTTSHHHHHHHHHHHHHHHHC-TTSEEEEEEGGG-----TSTTCCGGG-CSE
T ss_pred             eEEeCHHHHHHHHHhc-CCCCeEEEEEeCCCChHHHHHHHHHHHHHHHC-CCCEEEEEEhHH-----hHHHCCCCC-CCE
Confidence            3456788887766431 1234777777554444333222     22243 569999998752     268999997 999


Q ss_pred             EEEEeCCCCCCCcee-----ecCCCChhHHHhHHhcCC
Q psy16770        316 LLIFKEDKDRPSASI-----TMNSIPVPTLQDITDNNP  348 (554)
Q Consensus       316 lvvfk~~~~~~~~~i-----~~~~~~~~~l~~fi~~~~  348 (554)
                      +++|+++.. .....     -...++.+.|+.++..+.
T Consensus        77 ~~~fk~G~~-v~~~~G~~~~gg~~~~~~~le~~L~~~g  113 (118)
T 3evi_A           77 IFVYKNGQI-EAKFIGIIECGGINLKLEELEWKLAEVG  113 (118)
T ss_dssp             EEEEETTEE-EEEEESTTTTTCSSCCHHHHHHHHHTTT
T ss_pred             EEEEECCEE-EEEEeChhhhCCCCCCHHHHHHHHHHcC
Confidence            999998432 11111     123578889999998654

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=94.92  E-value=0.073  Score=45.55  Aligned_cols=96  Identities=9%  Similarity=0.099  Sum_probs=62.4

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHh----hccCCceEEEEEEccC-------CCChhHHhHhCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINA----FKHRTTIVFGVIVYDQ-------EDSSSVFQRFKV  309 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a----~~~~~~v~Fg~v~~~~-------~~~~~l~~k~~i  309 (554)
                      +..++.+++++.+.    .  ++++.|...--++.+.....    .+..+ +.|..++++.       ..+.+++++|+|
T Consensus        18 v~~l~~~~~~~~~~----~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~~v   90 (135)
T 3emx_A           18 LIYITPEEFRQLLQ----G--DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKAGV   90 (135)
T ss_dssp             EEECCHHHHHHHHT----S--SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHHTC
T ss_pred             eeecCHHHHHHHhC----C--cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHcCC
Confidence            45668888888773    2  66666654443433322211    11122 8899998822       156789999999


Q ss_pred             CCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        310 PGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       310 ~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      .+ .||+++|+++.. .  ....|..+.+.+..+++..
T Consensus        91 ~~-~Pt~~~~~~G~~-v--~~~~G~~~~~~~~~~i~~~  124 (135)
T 3emx_A           91 EG-TPTLVFYKEGRI-V--DKLVGATPWSLKVEKAREI  124 (135)
T ss_dssp             CS-SSEEEEEETTEE-E--EEEESCCCHHHHHHHHHHH
T ss_pred             ce-eCeEEEEcCCEE-E--EEEeCCCCHHHHHHHHHHH
Confidence            97 999999995322 1  2456777888888888754

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=94.76  E-value=0.095  Score=45.44  Aligned_cols=73  Identities=12%  Similarity=0.128  Sum_probs=49.9

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEE
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF  319 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvf  319 (554)
                      +.+++++.+..  ..++++++.|...--++.+...     .+..+.+.+.|+.++++  .+.+++++|+|.+ .||+++|
T Consensus        10 ~~~~~~~~v~~--~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d--~~~~~~~~~~i~~-~Pt~~~~   84 (142)
T 1qgv_A           10 NGWQVDQAILS--EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDIT--EVPDFNKMYELYD-PCTVMFF   84 (142)
T ss_dssp             SHHHHHHHHHT--CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETT--TCCTTTTSSCSCS-SCEEEEE
T ss_pred             CHHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccc--cCHHHHHHcCCCC-CCEEEEE
Confidence            55777766542  1467777877544333322221     22245677999999987  6788999999997 9999999


Q ss_pred             eCC
Q psy16770        320 KED  322 (554)
Q Consensus       320 k~~  322 (554)
                      +++
T Consensus        85 ~~G   87 (142)
T 1qgv_A           85 FRN   87 (142)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            864

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=94.65  E-value=0.046  Score=45.42  Aligned_cols=95  Identities=9%  Similarity=0.144  Sum_probs=57.7

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH-----hhccCCceEEEEEEccCCC----ChhHHhHhCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN-----AFKHRTTIVFGVIVYDQED----SSSVFQRFKVPG  311 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~-----a~~~~~~v~Fg~v~~~~~~----~~~l~~k~~i~~  311 (554)
                      +..++.+++++.+.    .++++++.|....-+..+....     +..+...  +.+++.+...    ..+++++|+|.+
T Consensus        14 ~~~~~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~i~~   87 (118)
T 1zma_A           14 LEVTTVVRAQEALD----KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH--IYFINSEEPSQLNDLQAFRSRYGIPT   87 (118)
T ss_dssp             SEECCHHHHHHHHH----TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC--CEEEETTCGGGHHHHHHHHHHHTCCS
T ss_pred             hhcCCHHHHHHHHh----CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCe--EEEEECCCcCcHHHHHHHHHHcCCCC
Confidence            34567788887774    3567777775544443333221     1123333  4445443211    246889999997


Q ss_pred             CCceEEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770        312 DKDSLLIFKEDKDRPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       312 ~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~  345 (554)
                       .||+++|+++.. .  ....|..+.+.|.+||+
T Consensus        88 -~Pt~~~~~~G~~-~--~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           88 -VPGFVHITDGQI-N--VRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             -SCEEEEEETTEE-E--EECCTTCCHHHHHHHHT
T ss_pred             -CCeEEEEECCEE-E--EEecCCCCHHHHHHHhh
Confidence             999999975432 1  24567778888988885

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=94.58  E-value=0.025  Score=48.95  Aligned_cols=60  Identities=18%  Similarity=0.260  Sum_probs=40.7

Q ss_pred             cEEEEEEc-----ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHH----HhCCcCCCCcceeccCCeEEEEe
Q psy16770        149 PHLILFYS-----DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLAR----RLGVGSQLPQIALLTDGRTSFFK  219 (554)
Q Consensus       149 ~~lV~Fya-----~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~----~~~v~~~~Pti~~~~~g~~~~y~  219 (554)
                      .++| |..     |||++|++....+.       ..++.+..+|.+.++.+..    ..|..+ +|.+  |.+|+.   .
T Consensus        36 ~Vvv-y~ks~~~~~~Cp~C~~ak~~L~-------~~gv~y~~vdI~~d~~~~~~L~~~~G~~t-vP~V--fI~G~~---i  101 (135)
T 2wci_A           36 PILL-YMKGSPKLPSCGFSAQAVQALA-------ACGERFAYVDILQNPDIRAELPKYANWPT-FPQL--WVDGEL---V  101 (135)
T ss_dssp             SEEE-EESBCSSSBSSHHHHHHHHHHH-------TTCSCCEEEEGGGCHHHHHHHHHHHTCCS-SCEE--EETTEE---E
T ss_pred             CEEE-EEEecCCCCCCccHHHHHHHHH-------HcCCceEEEECCCCHHHHHHHHHHHCCCC-cCEE--EECCEE---E
Confidence            4455 555     99999998776655       3367888999988765544    457775 8875  557863   4


Q ss_pred             CCc
Q psy16770        220 EPS  222 (554)
Q Consensus       220 ~g~  222 (554)
                      ||.
T Consensus       102 GG~  104 (135)
T 2wci_A          102 GGC  104 (135)
T ss_dssp             ESH
T ss_pred             ECh
Confidence            564

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=94.49  E-value=0.013  Score=50.17  Aligned_cols=73  Identities=11%  Similarity=0.273  Sum_probs=44.4

Q ss_pred             ccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-------HHHHHHhCCcCCCCcc
Q psy16770        135 WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-------QGLARRLGVGSQLPQI  207 (554)
Q Consensus       135 ~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-------~~l~~~~~v~~~~Pti  207 (554)
                      ++|++.+.   .+ + ++.|..+||++|++....+.+.    ...++.+..+|.+..       ..+.+..|... +|++
T Consensus         5 ~~~~~ii~---~~-~-Vvvysk~~Cp~C~~ak~lL~~~----~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~t-VP~I   74 (127)
T 3l4n_A            5 KEYSLILD---LS-P-IIIFSKSTCSYSKGMKELLENE----YQFIPNYYIIELDKHGHGEELQEYIKLVTGRGT-VPNL   74 (127)
T ss_dssp             HHHHHHHT---SC-S-EEEEECTTCHHHHHHHHHHHHH----EEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCS-SCEE
T ss_pred             HHHHHHHc---cC-C-EEEEEcCCCccHHHHHHHHHHh----cccCCCcEEEEecCCCCHHHHHHHHHHHcCCCC-cceE
Confidence            34566552   22 3 6779999999999988777752    111234555665542       12334458886 9987


Q ss_pred             eeccCCeEEEEeCCc
Q psy16770        208 ALLTDGRTSFFKEPS  222 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~  222 (554)
                      .  .+|+   ..||.
T Consensus        75 f--I~G~---~IGG~   84 (127)
T 3l4n_A           75 L--VNGV---SRGGN   84 (127)
T ss_dssp             E--ETTE---ECCCH
T ss_pred             E--ECCE---EEcCH
Confidence            4  4775   34664

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.43  E-value=0.17  Score=43.25  Aligned_cols=99  Identities=11%  Similarity=0.047  Sum_probs=59.9

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..+|.+++.+.+... +.++++++.|...--++.+...     .+.++ ..+.|+.++++.  .   .++|+|.. .||
T Consensus        12 v~~i~~~~~~~~v~~~-~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~~~--~---~~~~~i~~-~Pt   83 (135)
T 2dbc_A           12 LREISGNQYVNEVTNA-EKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFVKAIVNS--C---IEHYHDNC-LPT   83 (135)
T ss_dssp             CEECCHHHHHHHTTTC-CSSCEEEEEECCTTCHHHHHHHHHHHHHHHHC-SSEEEEEECCSS--S---CSSCCSSC-CSE
T ss_pred             eEEcCHHHHHHHHHhc-CCCCEEEEEEECCCChHHHHHHHHHHHHHHHC-CCcEEEEEEhhc--C---cccCCCCC-CCE
Confidence            4455888888877542 2346777877544433322221     12233 578999997753  2   27899997 999


Q ss_pred             EEEEeCCCCCCCceeecC-----CCChhHHHhHHhcCC
Q psy16770        316 LLIFKEDKDRPSASITMN-----SIPVPTLQDITDNNP  348 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~-----~~~~~~l~~fi~~~~  348 (554)
                      +++|+++.. .....-..     .++...|..++..+.
T Consensus        84 ~~~~~~G~~-v~~~~G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           84 IFVYKNGQI-EGKFIGIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             EEEESSSSC-SEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred             EEEEECCEE-EEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence            999985432 21111111     246778999888764

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=94.40  E-value=0.083  Score=49.57  Aligned_cols=102  Identities=11%  Similarity=0.026  Sum_probs=63.0

Q ss_pred             cccC-CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        241 IVPL-SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       241 v~~~-t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      +..+ +.+++.+.+... ..++++++.|....-++.+...     .+..+ ..+.|+.++++   +..++++|+|.+ .|
T Consensus       101 v~~i~~~~~f~~~v~~~-~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~-~~v~f~~vd~~---~~~l~~~~~i~~-~P  174 (217)
T 2trc_P          101 VYELETGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNSSLECLAAEY-PMVKFCKIRAS---NTGAGDRFSSDV-LP  174 (217)
T ss_dssp             EEECCSHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHTTC-TTSEEEEEEHH---HHTCSTTSCGGG-CS
T ss_pred             EEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEEECC---cHHHHHHCCCCC-CC
Confidence            3444 678888877542 2246777777554433332222     22233 57999999885   667899999997 99


Q ss_pred             eEEEEeCCCCCCCce---ee--cCCCChhHHHhHHhcCCC
Q psy16770        315 SLLIFKEDKDRPSAS---IT--MNSIPVPTLQDITDNNPY  349 (554)
Q Consensus       315 tlvvfk~~~~~~~~~---i~--~~~~~~~~l~~fi~~~~~  349 (554)
                      |+++|+++.. ...+   ..  ...+....|..||..+..
T Consensus       175 Tl~~~~~G~~-v~~~~G~~~~~g~~~~~~~Le~~L~~~g~  213 (217)
T 2trc_P          175 TLLVYKGGEL-ISNFISVAEQFAEDFFAADVESFLNEYGL  213 (217)
T ss_dssp             EEEEEETTEE-EEEETTGGGGSCSSCCHHHHHHHHHTTTC
T ss_pred             EEEEEECCEE-EEEEeCCcccCcccCCHHHHHHHHHHcCC
Confidence            9999986422 1111   00  123445789999987643

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=94.26  E-value=0.047  Score=42.97  Aligned_cols=56  Identities=20%  Similarity=0.358  Sum_probs=39.3

Q ss_pred             EEEEEcc----cccccccchHHHHHHHHHhCCCCEEEEEEEec-----CcH----HHHHHhCCc-----CCCCcceeccC
Q psy16770        151 LILFYSD----WCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-----NEQ----GLARRLGVG-----SQLPQIALLTD  212 (554)
Q Consensus       151 lV~Fya~----wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-----~~~----~l~~~~~v~-----~~~Pti~~~~~  212 (554)
                      ++.|+.+    ||++|++....+++       .++.+..+|.+     .++    .+.+..|..     + +|++.+ .+
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~-------~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~t-vP~v~i-~~   72 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTV-------KKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLT-MPQVFA-PD   72 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHH-------TTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCC-SCEEEC-TT
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHH-------cCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCc-cCEEEE-EC
Confidence            4568889    99999887766553       25677788887     553    466777887     7 887643 36


Q ss_pred             CeE
Q psy16770        213 GRT  215 (554)
Q Consensus       213 g~~  215 (554)
                      |+.
T Consensus        73 g~~   75 (87)
T 1aba_A           73 GSH   75 (87)
T ss_dssp             SCE
T ss_pred             CEE
Confidence            754

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=94.21  E-value=0.023  Score=52.30  Aligned_cols=42  Identities=26%  Similarity=0.585  Sum_probs=34.6

Q ss_pred             CCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEec
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVH  189 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~  189 (554)
                      .++.+|+|+..||+||+++.|.+   .++.+.+.+ ++++..++..
T Consensus        21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~-~v~~~~~~~~   65 (191)
T 3l9s_A           21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPE-GTKMTKYHVE   65 (191)
T ss_dssp             SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCT-TCCEEEEECS
T ss_pred             CCCeEEEEECCCChhHHHhChhccchHHHHHhCCC-CcEEEEEecc
Confidence            46899999999999999999986   688888865 4777777754

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=94.18  E-value=0.14  Score=51.21  Aligned_cols=86  Identities=12%  Similarity=0.042  Sum_probs=57.6

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------cHHHHHHhCCcC--
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------EQGLARRLGVGS--  202 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------~~~l~~~~~v~~--  202 (554)
                      ++++++.|| +.||+.|....+.|.+    .+..++.+..|+++.                     +..+++.|||-+  
T Consensus        24 Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~~~~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~~~~v~~~ygv~~~~   99 (322)
T 4eo3_A           24 GKYTILFFFPKAGTSGSTREAVEFSR----ENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFFNVLENG   99 (322)
T ss_dssp             TSEEEEEECSSTTSHHHHHHHHHHHH----SCCTTEEEEEEESCCHHHHHHHHHHHTCCSEEEECTTCHHHHHTTCEETT
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHH----HhhCCCEEEEEeCCCHHHHHHHHHhhCCceEEEEcCchHHHHhcCCCCCC
Confidence            468889999 6799999887777753    122257777777654                     447888888842  


Q ss_pred             -CCCcceec-cCCeEE-EEeC--CcccHHHHHHHHHHhC
Q psy16770        203 -QLPQIALL-TDGRTS-FFKE--PSFSVQKMVEFFRLKL  236 (554)
Q Consensus       203 -~~Pti~~~-~~g~~~-~y~~--g~~~~~~i~~fl~~~~  236 (554)
                       .+|+..++ ++|.+. .+++  ....++++.+++.+..
T Consensus       100 ~~~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~  138 (322)
T 4eo3_A          100 KTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLI  138 (322)
T ss_dssp             EECCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHH
T ss_pred             cCccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhc
Confidence             26666666 788764 2332  2235688888887653

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.74  E-value=0.081  Score=43.89  Aligned_cols=55  Identities=16%  Similarity=0.193  Sum_probs=36.8

Q ss_pred             EEEEEEcccccccc------cchHHHHHHHHHhCCCCEEEEEEEecCcHHHH----HHh--------CCcCCCCcceecc
Q psy16770        150 HLILFYSDWCFACL------QVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA----RRL--------GVGSQLPQIALLT  211 (554)
Q Consensus       150 ~lV~Fya~wC~~C~------~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~----~~~--------~v~~~~Pti~~~~  211 (554)
                      -++.|+.+||+.|+      ++...++       ..++.+..+|.+.++.+.    +++        |... +|.|  |.
T Consensus         9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~-------~~gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~t-vP~v--fi   78 (111)
T 2ct6_A            9 VIRVFIASSSGFVAIKKKQQDVVRFLE-------ANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPL-PPQI--FN   78 (111)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHHH-------HTTCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCC-SCEE--EE
T ss_pred             EEEEEEcCCCCCcccchhHHHHHHHHH-------HcCCCEEEEECCCCHHHHHHHHHHhcccccccCCCCC-CCEE--EE
Confidence            46678999999998      4444333       336889999998876543    333        5554 7765  45


Q ss_pred             CCe
Q psy16770        212 DGR  214 (554)
Q Consensus       212 ~g~  214 (554)
                      +|+
T Consensus        79 ~g~   81 (111)
T 2ct6_A           79 GDR   81 (111)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            775

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=93.68  E-value=0.049  Score=43.55  Aligned_cols=67  Identities=15%  Similarity=0.220  Sum_probs=44.3

Q ss_pred             EEEEEccccccc------ccchHHHHHHHHHhCCCCEEEEEEEecCcHH----HHHHhC--CcCCCCcceeccCCeEEEE
Q psy16770        151 LILFYSDWCFAC------LQVEPIFKKLMDELSPLGVGFFTVHVHNEQG----LARRLG--VGSQLPQIALLTDGRTSFF  218 (554)
Q Consensus       151 lV~Fya~wC~~C------~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~----l~~~~~--v~~~~Pti~~~~~g~~~~y  218 (554)
                      ++.|+++||+.|      ++....++       ..|+.+..+|.+.++.    +.+..|  ... +|.+  |.+|+   +
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~-------~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~-vP~i--fi~g~---~   70 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILD-------GKRIQYQLVDISQDNALRDEMRTLAGNPKAT-PPQI--VNGNH---Y   70 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHH-------HTTCCCEEEETTSCHHHHHHHHHHTTCTTCC-SCEE--EETTE---E
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHHhCCCCCC-CCEE--EECCE---E
Confidence            566899999999      55544433       3367888999987743    445667  666 9976  44675   4


Q ss_pred             eCCcccHHHHHHHHH
Q psy16770        219 KEPSFSVQKMVEFFR  233 (554)
Q Consensus       219 ~~g~~~~~~i~~fl~  233 (554)
                      .||.   +++.++.+
T Consensus        71 igG~---d~l~~l~~   82 (93)
T 1t1v_A           71 CGDY---ELFVEAVE   82 (93)
T ss_dssp             EEEH---HHHHHHHH
T ss_pred             EeCH---HHHHHHHh
Confidence            4553   55655543

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=93.38  E-value=0.11  Score=50.13  Aligned_cols=78  Identities=24%  Similarity=0.392  Sum_probs=52.7

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe------------------cCcHHHHHHhCCcCCC--Ccce
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV------------------HNEQGLARRLGVGSQL--PQIA  208 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~------------------~~~~~l~~~~~v~~~~--Pti~  208 (554)
                      ..+..|.+++|++|.+....+++.+...   ++....++.                  ..+..+.+++|.++ +  |.++
T Consensus        44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~~---~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~t-VyTPqI~  119 (270)
T 2axo_A           44 GVVELFTSQGCASCPPADEALRKMIQKG---DVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNG-VYTPQAI  119 (270)
T ss_dssp             CEEEEEECTTCTTCHHHHHHHHHHHHHT---SSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSC-CCSSEEE
T ss_pred             cEEEEEeCCCCCChHHHHHHHHHhhccC---CeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCc-ccCCEEE
Confidence            5677799999999999999998887764   342222232                  22345788999996 8  8865


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      +  +|+..  .+|. +.+.|.+.+.+.
T Consensus       120 I--ng~~~--v~G~-d~~~l~~~l~~~  141 (270)
T 2axo_A          120 L--NGRDH--VKGA-DVRGIYDRLDAF  141 (270)
T ss_dssp             E--TTTEE--EETT-CHHHHHHHHHHH
T ss_pred             E--CCEEe--ecCC-CHHHHHHHHHHh
Confidence            5  67642  2454 457777777643

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=93.11  E-value=0.063  Score=44.65  Aligned_cols=66  Identities=17%  Similarity=0.261  Sum_probs=44.4

Q ss_pred             EEEEEc-----ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHH----HhCCcCCCCcceeccCCeEEEEeCC
Q psy16770        151 LILFYS-----DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLAR----RLGVGSQLPQIALLTDGRTSFFKEP  221 (554)
Q Consensus       151 lV~Fya-----~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~----~~~v~~~~Pti~~~~~g~~~~y~~g  221 (554)
                      +|.|..     +||++|++....+.+       .|+.+..+|.+.++.+.+    ..|... +|.+  |.+|+   +.||
T Consensus        18 Vvlf~kg~~~~~~Cp~C~~ak~~L~~-------~gi~y~~~di~~d~~~~~~l~~~~g~~t-vP~i--fi~g~---~iGG   84 (111)
T 3zyw_A           18 CMLFMKGTPQEPRCGFSKQMVEILHK-------HNIQFSSFDIFSDEEVRQGLKAYSSWPT-YPQL--YVSGE---LIGG   84 (111)
T ss_dssp             EEEEESBCSSSBSSHHHHHHHHHHHH-------TTCCCEEEEGGGCHHHHHHHHHHHTCCS-SCEE--EETTE---EEEC
T ss_pred             EEEEEecCCCCCcchhHHHHHHHHHH-------cCCCeEEEECcCCHHHHHHHHHHHCCCC-CCEE--EECCE---EEec
Confidence            445778     999999987766653       357788889887765533    347775 8886  44774   4466


Q ss_pred             cccHHHHHHHH
Q psy16770        222 SFSVQKMVEFF  232 (554)
Q Consensus       222 ~~~~~~i~~fl  232 (554)
                      .   +++..+.
T Consensus        85 ~---d~l~~l~   92 (111)
T 3zyw_A           85 L---DIIKELE   92 (111)
T ss_dssp             H---HHHHHHH
T ss_pred             H---HHHHHHH
Confidence            4   5555544

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=92.70  E-value=0.054  Score=51.48  Aligned_cols=68  Identities=16%  Similarity=0.383  Sum_probs=47.5

Q ss_pred             cEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc---HHHHHHhCCcCCCCcceeccCCeEEEEeCCcccH
Q psy16770        149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE---QGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSV  225 (554)
Q Consensus       149 ~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~---~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~  225 (554)
                      ..++.|..+||++|++....+++.       ++.+-.+|.+.+   ..+.+.+|..+ +|++.  .+|+.   .||.   
T Consensus       170 ~~i~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~~i~~~~~~~~l~~~~g~~~-vP~~~--~~g~~---i~g~---  233 (241)
T 1nm3_A          170 ESISIFTKPGCPFCAKAKQLLHDK-------GLSFEEIILGHDATIVSVRAVSGRTT-VPQVF--IGGKH---IGGS---  233 (241)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHH-------TCCCEEEETTTTCCHHHHHHHTCCSS-SCEEE--ETTEE---EESH---
T ss_pred             ceEEEEECCCChHHHHHHHHHHHc-------CCceEEEECCCchHHHHHHHHhCCCC-cCEEE--ECCEE---EECH---
Confidence            447779999999999887777642       456667777665   34788899997 99975  46753   3443   


Q ss_pred             HHHHHHH
Q psy16770        226 QKMVEFF  232 (554)
Q Consensus       226 ~~i~~fl  232 (554)
                      ++|.+|+
T Consensus       234 ~~i~~~l  240 (241)
T 1nm3_A          234 DDLEKYF  240 (241)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHh
Confidence            5666554

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=92.48  E-value=0.39  Score=36.60  Aligned_cols=54  Identities=7%  Similarity=0.084  Sum_probs=40.9

Q ss_pred             ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        283 KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       283 ~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      ++.+.+.|..++++  .+.+++++|++.+ .|++++  ++ + .   ...|..+.+.|.++++.
T Consensus        30 ~~~~~~~~~~vd~~--~~~~~~~~~~v~~-~Pt~~~--~G-~-~---~~~G~~~~~~l~~~l~~   83 (85)
T 1fo5_A           30 EMPDAVEVEYINVM--ENPQKAMEYGIMA-VPTIVI--NG-D-V---EFIGAPTKEALVEAIKK   83 (85)
T ss_dssp             HCSSSEEEEEEESS--SSCCTTTSTTTCC-SSEEEE--TT-E-E---ECCSSSSSHHHHHHHHH
T ss_pred             HcCCceEEEEEECC--CCHHHHHHCCCcc-cCEEEE--CC-E-E---eeecCCCHHHHHHHHHH
Confidence            45568999999987  5778999999997 999998  22 2 1   34566677788888864

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=92.32  E-value=0.48  Score=45.20  Aligned_cols=103  Identities=11%  Similarity=0.014  Sum_probs=63.3

Q ss_pred             cccC-CcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        241 IVPL-SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       241 v~~~-t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      +..+ +.+++.+.+... ..++++++.|....-++.+..     ..+..+ ..+.|+.++++   ...++++|+|.+ .|
T Consensus       114 V~ei~s~~~f~~~v~~~-~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~-~~v~f~kVd~d---~~~l~~~~~I~~-~P  187 (245)
T 1a0r_P          114 VYELESGEQFLETIEKE-QKITTIVVHIYEDGIKGCDALNSSLICLAAEY-PMVKFCKIKAS---NTGAGDRFSSDV-LP  187 (245)
T ss_dssp             EEECCSHHHHHHHHHSS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHHHC-TTSEEEEEEHH---HHCCTTSSCTTT-CS
T ss_pred             EEEeCCHHHHHHHHHHh-cCCCEEEEEEECCCChHHHHHHHHHHHHHHHC-CCCEEEEEeCC---cHHHHHHCCCCC-CC
Confidence            4445 678888877531 236677777754433332222     122244 45999999886   266889999997 99


Q ss_pred             eEEEEeCCCCC--CCceee--cCCCChhHHHhHHhcCCC
Q psy16770        315 SLLIFKEDKDR--PSASIT--MNSIPVPTLQDITDNNPY  349 (554)
Q Consensus       315 tlvvfk~~~~~--~~~~i~--~~~~~~~~l~~fi~~~~~  349 (554)
                      |+++|+++...  ......  ...+....|..||..+..
T Consensus       188 Tll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g~  226 (245)
T 1a0r_P          188 TLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYGL  226 (245)
T ss_dssp             EEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTTC
T ss_pred             EEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHcCC
Confidence            99999864321  111111  123567789999998754

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=92.31  E-value=0.12  Score=42.75  Aligned_cols=53  Identities=25%  Similarity=0.295  Sum_probs=36.5

Q ss_pred             ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHH----HHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770        157 DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGL----ARRLGVGSQLPQIALLTDGRTSFFKEPS  222 (554)
Q Consensus       157 ~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l----~~~~~v~~~~Pti~~~~~g~~~~y~~g~  222 (554)
                      |||++|++....+.+       .|+.+..+|.+.++.+    .+..|... +|.+  |.+|+   +.||.
T Consensus        31 p~Cp~C~~ak~~L~~-------~gi~~~~~dI~~~~~~~~~l~~~~g~~t-vP~i--fi~g~---~iGG~   87 (109)
T 3ipz_A           31 PMCGFSNTVVQILKN-------LNVPFEDVNILENEMLRQGLKEYSNWPT-FPQL--YIGGE---FFGGC   87 (109)
T ss_dssp             BSSHHHHHHHHHHHH-------TTCCCEEEEGGGCHHHHHHHHHHHTCSS-SCEE--EETTE---EEECH
T ss_pred             CCChhHHHHHHHHHH-------cCCCcEEEECCCCHHHHHHHHHHHCCCC-CCeE--EECCE---EEeCH
Confidence            599999987766654       2577888888776544    34457776 9965  45775   44664

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=91.87  E-value=0.6  Score=41.35  Aligned_cols=99  Identities=11%  Similarity=0.069  Sum_probs=60.1

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-------HH-hhccCCceEEEEEEccCCCChhH-----------
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-------IN-AFKHRTTIVFGVIVYDQEDSSSV-----------  303 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-------~~-a~~~~~~v~Fg~v~~~~~~~~~l-----------  303 (554)
                      ..+..++++.+......++++++.|...--++.+..       .. ...+.+++.|..++++.  +.++           
T Consensus        30 ~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~--~~~~~~~~~~~~~~~  107 (172)
T 3f9u_A           30 HAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDN--KTPLTEPVKIMENGT  107 (172)
T ss_dssp             CCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTC--CCEEEEEEEEEETTE
T ss_pred             ccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCc--ccccchhhhhhhcch
Confidence            345567777665333457888887755444444332       11 11233468888888763  3333           


Q ss_pred             ---------------HhHhCCCCCCceEEEEeCCCCCCCceeecCCCC-hhHHHhHHhc
Q psy16770        304 ---------------FQRFKVPGDKDSLLIFKEDKDRPSASITMNSIP-VPTLQDITDN  346 (554)
Q Consensus       304 ---------------~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~-~~~l~~fi~~  346 (554)
                                     +++|+|.+ .||++++.+++...  ....|..+ .+.+.++|+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~-~Pt~~lid~~G~~~--~~~~G~~~~~~~l~~~l~~  163 (172)
T 3f9u_A          108 ERTLRTVGDKWSYLQRVKFGANA-QPFYVLIDNEGNPL--NKSYAYDEDISKYINFLQT  163 (172)
T ss_dssp             EEEEEEHHHHHHHHHHHHHSCCC-SSEEEEECTTSCBS--SCCBCSCCCHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhHHHHHHcCCCC-cceEEEECCCCCEE--eeccCCCCCHHHHHHHHHH
Confidence                           78999997 99999996544422  22346666 7777777753

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=91.60  E-value=0.39  Score=40.15  Aligned_cols=82  Identities=6%  Similarity=-0.057  Sum_probs=54.4

Q ss_pred             ceEEEEEecCCchhHHHHHHhh--ccCCc-----eEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecC
Q psy16770        261 KVHALLFQRSLPVRLRYLINAF--KHRTT-----IVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMN  333 (554)
Q Consensus       261 ~~~v~~f~~~~~~~~~~~~~a~--~~~~~-----v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~  333 (554)
                      ...+|.|...--+..+.+....  .+...     +.+..++.+.....+++.+|+|.+ .||+++|+++.+ .  ....|
T Consensus        19 ~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g-~PT~i~f~~G~e-v--~Ri~G   94 (116)
T 3dml_A           19 ELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTF-TPTFVLMAGDVE-S--GRLEG   94 (116)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCS-SSEEEEEETTEE-E--EEEEC
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCC-CCEEEEEECCEE-E--eeecC
Confidence            4556666555555555443322  23333     678888887554568999999997 999999995433 2  23467


Q ss_pred             CCChhHHHhHHhc
Q psy16770        334 SIPVPTLQDITDN  346 (554)
Q Consensus       334 ~~~~~~l~~fi~~  346 (554)
                      -++.+.+..|++.
T Consensus        95 ~~~~~~f~~~L~~  107 (116)
T 3dml_A           95 YPGEDFFWPMLAR  107 (116)
T ss_dssp             CCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            7888888888764

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=91.55  E-value=0.25  Score=41.61  Aligned_cols=53  Identities=17%  Similarity=0.196  Sum_probs=36.1

Q ss_pred             ccccccccchHHHHHHHHHhCCCCEE---EEEEEecCcHHH----HHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770        157 DWCFACLQVEPIFKKLMDELSPLGVG---FFTVHVHNEQGL----ARRLGVGSQLPQIALLTDGRTSFFKEPS  222 (554)
Q Consensus       157 ~wC~~C~~l~p~~~~~a~~l~~~~v~---~~~Vd~~~~~~l----~~~~~v~~~~Pti~~~~~g~~~~y~~g~  222 (554)
                      |||++|++....+.+.       |+.   +..+|...++.+    .+..|... +|.+  |.+|+   +.||.
T Consensus        29 p~Cp~C~~ak~lL~~~-------gv~~~~~~~~dv~~~~~~~~~l~~~sg~~t-vP~v--fI~g~---~iGG~   88 (121)
T 3gx8_A           29 PKCGFSRATIGLLGNQ-------GVDPAKFAAYNVLEDPELREGIKEFSEWPT-IPQL--YVNKE---FIGGC   88 (121)
T ss_dssp             BCTTHHHHHHHHHHHH-------TBCGGGEEEEECTTCHHHHHHHHHHHTCCS-SCEE--EETTE---EEESH
T ss_pred             CCCccHHHHHHHHHHc-------CCCcceEEEEEecCCHHHHHHHHHHhCCCC-CCeE--EECCE---EEecH
Confidence            5999999887776653       455   778888876554    34446675 8876  45775   44664

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=90.43  E-value=0.23  Score=45.12  Aligned_cols=55  Identities=7%  Similarity=0.222  Sum_probs=41.3

Q ss_pred             CCcEEEEEE-cccccccc-cchHHHHHHHHHh-CCCCEE-EEEEEecC---cHHHHHHhCCc
Q psy16770        147 TTPHLILFY-SDWCFACL-QVEPIFKKLMDEL-SPLGVG-FFTVHVHN---EQGLARRLGVG  201 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~-~l~p~~~~~a~~l-~~~~v~-~~~Vd~~~---~~~l~~~~~v~  201 (554)
                      ++++++.|| ..||+.|. .-.+.|.+.+.++ +..|+. +..|.++.   +...|+++++.
T Consensus        43 gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~~V~gvS~D~~~~~~~~~~~~~~~  104 (182)
T 1xiy_A           43 NKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIK  104 (182)
T ss_dssp             TCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESSCHHHHHHHHHHTTCC
T ss_pred             CCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC
Confidence            345555555 57999999 8899999999999 877774 77777776   45667777664

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=90.40  E-value=0.25  Score=44.74  Aligned_cols=43  Identities=19%  Similarity=0.314  Sum_probs=34.6

Q ss_pred             CCCcEEEEEEcccccccccchHHH-HHHHHHhCCCCEEEEEEEec
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIF-KKLMDELSPLGVGFFTVHVH  189 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~-~~~a~~l~~~~v~~~~Vd~~  189 (554)
                      ..++.+|+|++.+|++|..+.+.+ .++.+.+.. .+.+..+...
T Consensus        16 ~~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~-~v~~~~~~l~   59 (195)
T 3c7m_A           16 NADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKD-IVAFTPFHLE   59 (195)
T ss_dssp             SCTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTT-TCEEEEEECT
T ss_pred             CCCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCC-ceEEEEEecC
Confidence            356789999999999999999999 888888764 3677666644

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=89.96  E-value=1.4  Score=36.93  Aligned_cols=44  Identities=7%  Similarity=0.273  Sum_probs=32.4

Q ss_pred             CChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770        299 DSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       299 ~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~  345 (554)
                      .+..++++|++.. .|+++++.++..-  .....+..+.+.|.++|+
T Consensus       102 ~~~~~~~~~~v~~-~P~~~lid~~G~i--~~~~~g~~~~~~l~~~l~  145 (145)
T 3erw_A          102 SKGELMKEYHIIT-IPTSFLLNEKGEI--EKTKIGPMTAEQLKEWTE  145 (145)
T ss_dssp             SSSHHHHHTTCCE-ESEEEEECTTCCE--EEEEESCCCHHHHHHHHC
T ss_pred             CchhHHHhcCcCc-cCeEEEEcCCCcE--EEEEcCCcCHHHHHHhhC
Confidence            3568999999997 9999999654432  234567778888887763

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=89.94  E-value=1.9  Score=36.79  Aligned_cols=92  Identities=12%  Similarity=0.116  Sum_probs=59.6

Q ss_pred             ceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccch-----------------------HHHHhhCCCC
Q psy16770        369 KLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQP-----------------------EFVNALTSPE  424 (554)
Q Consensus       369 ~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~-----------------------~~~~~~~~~~  424 (554)
                      +..+|.|. .....+......|.+++++  +.+..+.|+.|+.+...                       ++.+.+    
T Consensus        31 k~~lv~f~~~~C~~C~~~~~~l~~l~~~--~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----  104 (152)
T 2lja_A           31 KYIYIDVWATWCGPCRGELPALKELEEK--YAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAY----  104 (152)
T ss_dssp             SEEEEEECCSSCCGGGGTHHHHHHHHHH--STTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHT----
T ss_pred             CEEEEEEECCcCHhHHHHhHHHHHHHHH--hccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHc----
Confidence            44555554 4556677788899999988  87667999999887644                       233333    


Q ss_pred             CCccccceEEEEEEecCCC-eeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770        425 DSSEISLHIAAMWRMDYKK-IKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN  480 (554)
Q Consensus       425 ~~~~~~~~~~~v~~~~~~~-~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~  480 (554)
                         . ...+|.++..++++ ..+. ..|         ..+.+.|.++|++++.+..+
T Consensus       105 ---~-v~~~P~~~lid~~G~i~~~-~~g---------~~~~~~l~~~l~~~~~~~~~  147 (152)
T 2lja_A          105 ---L-INGIPRFILLDRDGKIISA-NMT---------RPSDPKTAEKFNELLGLEGH  147 (152)
T ss_dssp             ---T-CCSSCCEEEECTTSCEEES-SCC---------CTTCHHHHHHHHHHHTCCSS
T ss_pred             ---C-cCCCCEEEEECCCCeEEEc-cCC---------CCCHHHHHHHHHHHhccccc
Confidence               0 12456555556555 3442 223         24678999999999988875

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=89.53  E-value=0.86  Score=34.54  Aligned_cols=79  Identities=13%  Similarity=0.190  Sum_probs=52.9

Q ss_pred             EEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCCeeEEEec
Q psy16770        372 VVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLL  450 (554)
Q Consensus       372 vvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ky~~~~  450 (554)
                      ++.|. +..+.+....+.+.+++++  +.+ .+.|..+|.++.+++++.+       . ...+|.+.. +.+ .++   .
T Consensus         5 vv~f~~~~C~~C~~~~~~l~~~~~~--~~~-~~~~~~vd~~~~~~~~~~~-------~-v~~~Pt~~~-~G~-~~~---~   68 (85)
T 1nho_A            5 IEVFTSPTCPYCPMAIEVVDEAKKE--FGD-KIDVEKIDIMVDREKAIEY-------G-LMAVPAIAI-NGV-VRF---V   68 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHH--HCS-SCCEEEECTTTCGGGGGGT-------C-SSCSSEEEE-TTT-EEE---E
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHH--hcC-CeEEEEEECCCCHHHHHhC-------C-ceeeCEEEE-CCE-EEE---c
Confidence            34444 5556778888899999988  753 5999999999888877766       1 135565544 222 223   3


Q ss_pred             CCCCCcccccchhhHHHHHHHHhhh
Q psy16770        451 GDAVDDWKDYNTTKDRLDAGLRSLV  475 (554)
Q Consensus       451 ~~~~~~~~~~~~t~e~l~~fl~~~~  475 (554)
                      |.         .+.+.|.++|++.+
T Consensus        69 G~---------~~~~~l~~~l~~~l   84 (85)
T 1nho_A           69 GA---------PSREELFEAINDEM   84 (85)
T ss_dssp             CS---------SCCHHHHHHHHHHC
T ss_pred             cC---------CCHHHHHHHHHHHh
Confidence            31         25578999988775

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=88.58  E-value=2.9  Score=35.46  Aligned_cols=102  Identities=7%  Similarity=0.036  Sum_probs=56.9

Q ss_pred             ceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCC------------Ccc--ccceE
Q psy16770        369 KLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPED------------SSE--ISLHI  433 (554)
Q Consensus       369 ~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~------------~~~--~~~~~  433 (554)
                      +..+|.|. .....+......|.+++++  ++...+.++.|+.+...+-...+....+            ...  ....+
T Consensus        29 k~vll~f~~~~C~~C~~~~~~l~~l~~~--~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  106 (152)
T 3gl3_A           29 SVVYLDFWASWCGPCRQSFPWMNQMQAK--YKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM  106 (152)
T ss_dssp             SEEEEEEECTTCTHHHHHHHHHHHHHHH--HGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred             CEEEEEEECCcCHHHHHHHHHHHHHHHH--hhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence            44555444 4556677778888999888  8765689999988754422221100000            000  01245


Q ss_pred             EEEEEecCCC-eeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770        434 AAMWRMDYKK-IKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN  480 (554)
Q Consensus       434 ~~v~~~~~~~-~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~  480 (554)
                      |.++..+.++ ..+... |.       ...+.+.|.++|++.+.+...
T Consensus       107 P~~~lid~~G~i~~~~~-g~-------~~~~~~~l~~~i~~~~~~~~~  146 (152)
T 3gl3_A          107 PTSFLIDRNGKVLLQHV-GF-------RPADKEALEQQILAALGGNEG  146 (152)
T ss_dssp             SEEEEECTTSBEEEEEE-SC-------CTTTHHHHHHHHHHHTC----
T ss_pred             CeEEEECCCCCEEEEEc-cC-------CCcCHHHHHHHHHHHHccccc
Confidence            6555555555 455433 31       124678999999999988775

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=88.53  E-value=3.1  Score=35.55  Aligned_cols=89  Identities=15%  Similarity=0.102  Sum_probs=56.3

Q ss_pred             ceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccc-------------------------hHHHHhhCC
Q psy16770        369 KLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQ-------------------------PEFVNALTS  422 (554)
Q Consensus       369 ~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q-------------------------~~~~~~~~~  422 (554)
                      +..+|.|. .....+......|.+++++  +.++.+.|+.|+.+..                         .++++.|  
T Consensus        30 k~vll~F~a~~C~~C~~~~~~l~~l~~~--~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--  105 (152)
T 2lrn_A           30 KYVLVDFWFAGCSWCRKETPYLLKTYNA--FKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESY--  105 (152)
T ss_dssp             SEEEEEEECTTCTTHHHHHHHHHHHHHH--HTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHT--
T ss_pred             CEEEEEEECCCChhHHHHHHHHHHHHHH--hccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHh--
Confidence            44445444 4556677778889999888  8766699999988752                         3444444  


Q ss_pred             CCCCccccceEEEEEEecCCC-eeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770        423 PEDSSEISLHIAAMWRMDYKK-IKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN  480 (554)
Q Consensus       423 ~~~~~~~~~~~~~v~~~~~~~-~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~  480 (554)
                           . ...+|.++..+.++ ..+..+.             .+.|.++|++++++...
T Consensus       106 -----~-v~~~P~~~lid~~G~i~~~~~~-------------~~~l~~~l~~l~~~~~~  145 (152)
T 2lrn_A          106 -----C-IVGFPHIILVDPEGKIVAKELR-------------GDDLYNTVEKFVNGAKE  145 (152)
T ss_dssp             -----T-CCSSCEEEEECTTSEEEEECCC-------------TTHHHHHHHHHHTSSSS
T ss_pred             -----C-CCcCCeEEEECCCCeEEEeeCC-------------HHHHHHHHHHHHhhccc
Confidence                 1 12456555555555 4454332             26788899988887664

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=88.45  E-value=0.41  Score=52.85  Aligned_cols=53  Identities=13%  Similarity=0.087  Sum_probs=41.8

Q ss_pred             HhhccCCCCCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH
Q psy16770         11 LFINCAVSLDPYETLGVPRTASL--QEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNI   70 (554)
Q Consensus        11 ~~~~~~~~~d~y~~Lgv~~~a~~--~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~   70 (554)
                      +-...+...|+|++||++.+...  .+|++|||+||+..+++       .+++..+..|+.|
T Consensus       621 l~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          621 LDWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRYTLVDMANKV  675 (681)
T ss_dssp             HHHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHHHHHHHHHHH
T ss_pred             HHHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHHHHHHHhccc
Confidence            44445667779999999777765  67999999999976655       4789999988876

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=87.83  E-value=2.5  Score=35.94  Aligned_cols=93  Identities=8%  Similarity=0.048  Sum_probs=56.6

Q ss_pred             ceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccch----------------------HHHHhhCCCCC
Q psy16770        369 KLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQP----------------------EFVNALTSPED  425 (554)
Q Consensus       369 ~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~----------------------~~~~~~~~~~~  425 (554)
                      +..+|.|. .....+......|.+++++  +....+.|+.|+.+...                      ++...+     
T Consensus        27 k~vlv~F~~~~C~~C~~~~~~l~~~~~~--~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----   99 (151)
T 2f9s_A           27 KGVFLNFWGTWCEPCKKEFPYMANQYKH--FKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAY-----   99 (151)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHH--HGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHT-----
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHH--hccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhc-----
Confidence            44555554 4445566677788888888  76556899999886532                      333333     


Q ss_pred             CccccceEEEEEEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770        426 SSEISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN  480 (554)
Q Consensus       426 ~~~~~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~  480 (554)
                        . ...+|.++..+.++..-....|.         .+.+.|.++|++++.+...
T Consensus       100 --~-v~~~P~~~lid~~G~i~~~~~G~---------~~~~~l~~~l~~ll~~~~~  142 (151)
T 2f9s_A          100 --D-VSPLPTTFLINPEGKVVKVVTGT---------MTESMIHDYMNLIKPGETS  142 (151)
T ss_dssp             --T-CCSSCEEEEECTTSEEEEEEESC---------CCHHHHHHHHHHHSCC---
T ss_pred             --C-CCCCCeEEEECCCCcEEEEEeCC---------CCHHHHHHHHHHHHhhhhc
Confidence              1 13556655556666332233342         3678999999999988775

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=87.53  E-value=2.9  Score=35.14  Aligned_cols=89  Identities=11%  Similarity=0.245  Sum_probs=54.4

Q ss_pred             ceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEeccc---------------------------chHHHHhh
Q psy16770        369 KLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEK---------------------------QPEFVNAL  420 (554)
Q Consensus       369 ~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~---------------------------q~~~~~~~  420 (554)
                      +..+|.|. .....+......|.+++++  +.++ +.|+.|+.+.                           ..++++.+
T Consensus        30 k~~lv~f~~~~C~~C~~~~~~l~~l~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  106 (148)
T 2b5x_A           30 KPTLIHFWSISCHLCKEAMPQVNEFRDK--YQDQ-LNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF  106 (148)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHH--HTTT-SEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred             CEEEEEEEcCCCHHHHHHhHHHHHHHHH--hcCC-cEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHh
Confidence            33444444 4555667777788888888  8665 8999988532                           33444444


Q ss_pred             CCCCCCccccceEEEEEEecCCC-eeEEEecCCCCCcccccchhhHHHHHHHHhhhcCC
Q psy16770        421 TSPEDSSEISLHIAAMWRMDYKK-IKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDP  478 (554)
Q Consensus       421 ~~~~~~~~~~~~~~~v~~~~~~~-~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~  478 (554)
                             . ...+|.++..+.++ ..+ ...|.         .+.+.|.++|+++++..
T Consensus       107 -------~-v~~~P~~~lid~~G~i~~-~~~g~---------~~~~~l~~~l~~~l~~~  147 (148)
T 2b5x_A          107 -------E-NEYVPAYYVFDKTGQLRH-FQAGG---------SGMKMLEKRVNRVLAET  147 (148)
T ss_dssp             -------C-CCCSSEEEEECTTCBEEE-EEESC---------STTHHHHHHHHHHHTTC
T ss_pred             -------C-CCCCCEEEEECCCCcEEE-EecCC---------CCHHHHHHHHHHHHhcc
Confidence                   1 12456555555555 334 23342         35688999999988753

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=87.52  E-value=3.2  Score=34.17  Aligned_cols=82  Identities=12%  Similarity=0.093  Sum_probs=50.6

Q ss_pred             CceEEEEEecCCchhHHHHHH----hh-ccCCceEEEEEEccC---------------------CCChhHHhHhCCCCCC
Q psy16770        260 NKVHALLFQRSLPVRLRYLIN----AF-KHRTTIVFGVIVYDQ---------------------EDSSSVFQRFKVPGDK  313 (554)
Q Consensus       260 ~~~~v~~f~~~~~~~~~~~~~----a~-~~~~~v~Fg~v~~~~---------------------~~~~~l~~k~~i~~~~  313 (554)
                      +++.++.|....-+.......    .. ++. ++.|..++++.                     ..+..++++|++.+ .
T Consensus        25 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~-~  102 (136)
T 1zzo_A           25 GKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQ-Q  102 (136)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCS-S
T ss_pred             CCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCC-C
Confidence            456666664433333222211    11 333 78888887643                     23567899999997 9


Q ss_pred             ceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        314 DSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       314 Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      |+++++.++..-  . ...+..+...|.++|+.
T Consensus       103 P~~~~id~~g~i--~-~~~g~~~~~~l~~~l~~  132 (136)
T 1zzo_A          103 PAYAFVDPHGNV--D-VVRGRMSQDELTRRVTA  132 (136)
T ss_dssp             SEEEEECTTCCE--E-EEESCCCHHHHHHHHHH
T ss_pred             ceEEEECCCCCE--E-EEecCCCHHHHHHHHHH
Confidence            999999754431  1 35666778888887764

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=87.13  E-value=0.47  Score=42.59  Aligned_cols=55  Identities=9%  Similarity=0.134  Sum_probs=42.5

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEE-EEEEEecC---cHHHHHHhCCc
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVG-FFTVHVHN---EQGLARRLGVG  201 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~-~~~Vd~~~---~~~l~~~~~v~  201 (554)
                      ++++++.|| ..||+-|..-.+.|.+.+.+++..|+. +..|.++.   ..+.|+++++.
T Consensus        42 gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~~~~~~w~~~~~~~  101 (171)
T 2xhf_A           42 GRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDPE  101 (171)
T ss_dssp             TSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHHCTT
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence            345566566 469999999999999999999866785 87787776   45678888763

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=86.40  E-value=0.14  Score=43.13  Aligned_cols=62  Identities=13%  Similarity=0.242  Sum_probs=39.9

Q ss_pred             cCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCC-ceeecCCCChhHHHhHHhc
Q psy16770        284 HRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPS-ASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       284 ~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~-~~i~~~~~~~~~l~~fi~~  346 (554)
                      +.+++.|..++++...+.+++++|+|.+ .|++++|.+...+.. .....|..+.+.|.++|+.
T Consensus        51 ~~~~~~~~~vd~~~~~~~~~~~~~~v~~-~Pt~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~  113 (130)
T 2lst_A           51 LEARFVVASVSVDTPEGQELARRYRVPG-TPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQ  113 (130)
Confidence            3456788888875445678999999997 999999953211110 1123455566666666653

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=85.49  E-value=2.8  Score=36.25  Aligned_cols=83  Identities=12%  Similarity=0.135  Sum_probs=49.5

Q ss_pred             CCceEEEEEe-cCCchhHHHHHHh------h--ccCCceEEEEEEccCCC---------ChhHHhHhCCCCCCceEEEEe
Q psy16770        259 DNKVHALLFQ-RSLPVRLRYLINA------F--KHRTTIVFGVIVYDQED---------SSSVFQRFKVPGDKDSLLIFK  320 (554)
Q Consensus       259 ~~~~~v~~f~-~~~~~~~~~~~~a------~--~~~~~v~Fg~v~~~~~~---------~~~l~~k~~i~~~~Ptlvvfk  320 (554)
                      .++++++.|. ..--+..+.....      +  .....+.+..++++...         +.+++++|+|.+ .|+++++.
T Consensus        46 ~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~-~Pt~~~~d  124 (154)
T 2ju5_A           46 DHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTG-FPELVFID  124 (154)
T ss_dssp             HCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCS-SSEEEEEC
T ss_pred             CCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCC-CCEEEEEc
Confidence            4677777775 4433333322211      1  12356788888776321         247899999997 99999995


Q ss_pred             CCCCCCCceeecCCC--ChhHHHhHHh
Q psy16770        321 EDKDRPSASITMNSI--PVPTLQDITD  345 (554)
Q Consensus       321 ~~~~~~~~~i~~~~~--~~~~l~~fi~  345 (554)
                      +++...  ... |..  +...+.++|+
T Consensus       125 ~~G~~~--~~~-G~~~~~~~~l~~~l~  148 (154)
T 2ju5_A          125 AEGKQL--ARM-GFEPGGGAAYVSKVK  148 (154)
T ss_dssp             TTCCEE--EEE-CCCTTCHHHHHHHHH
T ss_pred             CCCCEE--EEe-cCCCCCHHHHHHHHH
Confidence            544322  223 555  5666777665

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=85.47  E-value=4.5  Score=34.38  Aligned_cols=100  Identities=4%  Similarity=-0.026  Sum_probs=57.4

Q ss_pred             ceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHH---HhhCCCC------C---------Cccc
Q psy16770        369 KLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFV---NALTSPE------D---------SSEI  429 (554)
Q Consensus       369 ~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~---~~~~~~~------~---------~~~~  429 (554)
                      +..+|.|. .....+......|.+++++  ++.+.+.|+.|+.+...++.   +.+-...      +         ....
T Consensus        25 k~vlv~F~a~wC~~C~~~~~~l~~l~~~--~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           25 PVRIVNLWATWCGPCRKEMPAMSKWYKA--QKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHT--SCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CEEEEEEEcCcCHHHHHHHHHHHHHHHH--hccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            45555554 4455667778889999888  87777999999886433322   1110000      0         0000


Q ss_pred             cceEEEEEEecCCC-eeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770        430 SLHIAAMWRMDYKK-IKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN  480 (554)
Q Consensus       430 ~~~~~~v~~~~~~~-~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~  480 (554)
                      ...+|.++..+.++ ..+. ..|         ..+.+.|.++|+++.++...
T Consensus       103 v~~~P~~~lid~~G~i~~~-~~g---------~~~~~~l~~~l~~l~~~~~~  144 (151)
T 3raz_A          103 VGVLPFTVVEAPKCGYRQT-ITG---------EVNEKSLTDAVKLAHSKCRE  144 (151)
T ss_dssp             SCCSSEEEEEETTTTEEEE-CCS---------CCCHHHHHHHHHHHHTC---
T ss_pred             cCCCCEEEEECCCCcEEEE-ECC---------CCCHHHHHHHHHHHHHHhhc
Confidence            12456555555555 4453 334         24678999999999998875

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=85.28  E-value=5.1  Score=34.41  Aligned_cols=101  Identities=13%  Similarity=0.151  Sum_probs=58.7

Q ss_pred             ceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCC--c----------------c-
Q psy16770        369 KLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDS--S----------------E-  428 (554)
Q Consensus       369 ~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~--~----------------~-  428 (554)
                      +..||.|. .....+......|.+++++  ++...+.|+.|+.+...+.+..+....+.  .                + 
T Consensus        35 k~vlv~f~~~~C~~C~~~~~~l~~l~~~--~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3or5_A           35 KAYIVNFFATWCPPCRSEIPDMVQVQKT--WASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG  112 (165)
T ss_dssp             CEEEEEEECTTSHHHHHHHHHHHHHHHH--HTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred             CEEEEEEEcCcCHHHHHHHHHHHHHHHH--hccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence            44455444 4555667778888899888  87666999999987655544444110000  0                0 


Q ss_pred             ccceEEEEEEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770        429 ISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN  480 (554)
Q Consensus       429 ~~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~  480 (554)
                      ....+|.++..+.++..-....|.         .+.+.+.++|+++++....
T Consensus       113 ~i~~~P~~~lid~~G~i~~~~~g~---------~~~~~l~~~l~~~l~~~~~  155 (165)
T 3or5_A          113 GITGIPTSFVIDASGNVSGVIVGP---------RSKADFDRIVKMALGAKAA  155 (165)
T ss_dssp             CSCSSSEEEEECTTSBEEEEECSC---------CCHHHHHHHHHHHHC----
T ss_pred             CCCCCCeEEEECCCCcEEEEEcCC---------CCHHHHHHHHHHHHhhhcc
Confidence            013566655556666332233442         3678999999999875543

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=85.05  E-value=3.8  Score=35.77  Aligned_cols=96  Identities=14%  Similarity=0.111  Sum_probs=57.3

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh--------ccCCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF--------KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~--------~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      ...++++-++.....+++++|.|....-...+.+....        .+++++.+-.++.+......+.++|++.+ +|++
T Consensus        27 ~~~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~-~P~~  105 (153)
T 2dlx_A           27 HKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGD-FPYV  105 (153)
T ss_dssp             CCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCS-SSEE
T ss_pred             cccCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCC-CCEE
Confidence            34567766654445689999988765444443332111        12345666666665433456889999997 9999


Q ss_pred             EEEeCC-CCCCCceeecCCCChhHHHhHH
Q psy16770        317 LIFKED-KDRPSASITMNSIPVPTLQDIT  344 (554)
Q Consensus       317 vvfk~~-~~~~~~~i~~~~~~~~~l~~fi  344 (554)
                      +++.+. .+.. ..+ .+ ++...+.++|
T Consensus       106 ~fld~~~G~~l-~~~-~g-~~~~~fl~~L  131 (153)
T 2dlx_A          106 SILDPRTGQKL-VEW-HQ-LDVSSFLDQV  131 (153)
T ss_dssp             EEECTTTCCCC-EEE-SS-CCHHHHHHHH
T ss_pred             EEEeCCCCcEe-eec-CC-CCHHHHHHHH
Confidence            999775 3333 222 33 6666544433

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=85.05  E-value=1.9  Score=35.24  Aligned_cols=74  Identities=12%  Similarity=0.152  Sum_probs=47.7

Q ss_pred             eEEEEEecCCchhHHHHHHhhc---cCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChh
Q psy16770        262 VHALLFQRSLPVRLRYLINAFK---HRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVP  338 (554)
Q Consensus       262 ~~v~~f~~~~~~~~~~~~~a~~---~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~  338 (554)
                      ..+++|....-+........+.   -...+.|..++.+  .+++++++|++.  .|+|++|.++..     +..+.++.+
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~i~~~~vDId--~d~~l~~~ygv~--VP~l~~~~dG~~-----v~~g~~~~~  100 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSWFELEVINID--GNEHLTRLYNDR--VPVLFAVNEDKE-----LCHYFLDSD  100 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSCCCCEEEETT--TCHHHHHHSTTS--CSEEEETTTTEE-----EECSSCCCH
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcCCeEEEEECC--CCHHHHHHhCCC--CceEEEEECCEE-----EEecCCCHH
Confidence            4466665544443333322221   1123888899887  688999999985  899999976432     334667888


Q ss_pred             HHHhHH
Q psy16770        339 TLQDIT  344 (554)
Q Consensus       339 ~l~~fi  344 (554)
                      .|.+||
T Consensus       101 ~L~~~L  106 (107)
T 2fgx_A          101 VIGAYL  106 (107)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            888876

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=84.89  E-value=5.5  Score=33.76  Aligned_cols=94  Identities=12%  Similarity=0.114  Sum_probs=54.6

Q ss_pred             ceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccc-hH----------------------HHHhhCCCC
Q psy16770        369 KLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQ-PE----------------------FVNALTSPE  424 (554)
Q Consensus       369 ~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q-~~----------------------~~~~~~~~~  424 (554)
                      +..+|.|. .....+......|.+++++  +.+..+.|+.|+.+.. .+                      +...|    
T Consensus        29 k~vll~f~~~~C~~C~~~~~~l~~~~~~--~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----  102 (154)
T 3kcm_A           29 QVVIVNFWATWCPPCREEIPSMMRLNAA--MAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLY----  102 (154)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHH--TTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHH----
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHH--hccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHh----
Confidence            44555454 4455666777788899888  8776789999888754 22                      33333    


Q ss_pred             CCccccceEEEEEEecCCC-eeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770        425 DSSEISLHIAAMWRMDYKK-IKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN  480 (554)
Q Consensus       425 ~~~~~~~~~~~v~~~~~~~-~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~  480 (554)
                         . ...+|.++..+.++ ..+.. .|.       ...+.+.+.++|+++......
T Consensus       103 ---~-v~~~P~~~lid~~G~i~~~~-~g~-------~~~~~~~l~~~l~~l~~~~~~  147 (154)
T 3kcm_A          103 ---G-TTGVPETFVIDRHGVILKKV-VGA-------MEWDHPEVIAFLNNELSKARE  147 (154)
T ss_dssp             ---T-CCSBCEEEEECTTSBEEEEE-ESC-------CCTTSHHHHHHHHTC------
T ss_pred             ---C-CCCCCeEEEECCCCcEEEEE-cCC-------CccccHHHHHHHHHHHHHhhh
Confidence               1 13566455556565 44533 332       124668999999998877664

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=84.68  E-value=5.6  Score=33.66  Aligned_cols=92  Identities=12%  Similarity=0.120  Sum_probs=56.1

Q ss_pred             ceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEecc-----------------------cchHHHHhhCCCC
Q psy16770        369 KLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIE-----------------------KQPEFVNALTSPE  424 (554)
Q Consensus       369 ~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~-----------------------~q~~~~~~~~~~~  424 (554)
                      +..+|.|. .....+......|.+++++  +....+.++.|+.+                       ...++++.|    
T Consensus        29 k~~lv~f~~~~C~~C~~~~~~l~~l~~~--~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----  102 (153)
T 2l5o_A           29 KVTLINFWFPSCPGCVSEMPKIIKTAND--YKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAF----  102 (153)
T ss_dssp             CEEEEEEECTTCTTHHHHHHHHHHHHHH--GGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHH----
T ss_pred             CEEEEEEECCCCccHHHHHHHHHHHHHH--hccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHc----
Confidence            34444444 5556677778888888888  76656888777632                       233444444    


Q ss_pred             CCccccceEEEEEEecCCC-eeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770        425 DSSEISLHIAAMWRMDYKK-IKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN  480 (554)
Q Consensus       425 ~~~~~~~~~~~v~~~~~~~-~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~  480 (554)
                         . ...+|.++..+.++ ..+. +.|.         .+.+.|.++|++++++...
T Consensus       103 ---~-i~~~P~~~lid~~G~i~~~-~~g~---------~~~~~l~~~l~~ll~~~~~  145 (153)
T 2l5o_A          103 ---G-TQVYPTSVLIGKKGEILKT-YVGE---------PDFGKLYQEIDTAWRNSDA  145 (153)
T ss_dssp             ---T-CCSSSEEEEECSSSCCCEE-EESS---------CCHHHHHHHHHHHHHCCSS
T ss_pred             ---C-CCccCeEEEECCCCcEEEE-EcCC---------CCHHHHHHHHHHHHHhhhh
Confidence               1 12455555555555 3332 3342         3678999999999888765

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=83.98  E-value=4.7  Score=33.20  Aligned_cols=85  Identities=14%  Similarity=0.100  Sum_probs=51.4

Q ss_pred             ceEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEeccc----------------------chHHHHhhCCCCC
Q psy16770        369 KLCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEK----------------------QPEFVNALTSPED  425 (554)
Q Consensus       369 ~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~----------------------q~~~~~~~~~~~~  425 (554)
                      +..+|.|. .....+......+.+++++  +.  .+.|+.|+.+.                      ..++.+.+     
T Consensus        25 k~~lv~f~~~~C~~C~~~~~~l~~~~~~--~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----   95 (136)
T 1lu4_A           25 KPAVLWFWTPWCPFCNAEAPSLSQVAAA--NP--AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARY-----   95 (136)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHH--CT--TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHT-----
T ss_pred             CEEEEEEECCcChhHHHHHHHHHHHHHH--CC--CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhc-----
Confidence            34444444 4555667777888888888  75  58999998866                      33444444     


Q ss_pred             CccccceEEEEEEecCCCeeEEEec---CCCCCcccccchhhHHHHHHHHhhh
Q psy16770        426 SSEISLHIAAMWRMDYKKIKYGWLL---GDAVDDWKDYNTTKDRLDAGLRSLV  475 (554)
Q Consensus       426 ~~~~~~~~~~v~~~~~~~~ky~~~~---~~~~~~~~~~~~t~e~l~~fl~~~~  475 (554)
                        . ...+|.++..+.++..- ...   |         ..+.+.|.++|++++
T Consensus        96 --~-i~~~P~~~lid~~G~i~-~~~~~~g---------~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           96 --N-VPWQPAFVFYRADGTST-FVNNPTA---------AMSQDELSGRVAALT  135 (136)
T ss_dssp             --T-CCSSSEEEEECTTSCEE-EECCSSS---------CCCHHHHHHHHHHC-
T ss_pred             --C-CCCCCEEEEECCCCcEE-EEEcCCC---------ccCHHHHHHHHHHHh
Confidence              1 13456555555555322 233   3         246788999998875

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=83.43  E-value=1.1  Score=42.10  Aligned_cols=51  Identities=14%  Similarity=0.184  Sum_probs=37.5

Q ss_pred             cccCCCCCCcEEEEEEcccccccccchHH-HHHHHHHhC-CCCEEEEEEEecC
Q psy16770        140 NYIPKSYTTPHLILFYSDWCFACLQVEPI-FKKLMDELS-PLGVGFFTVHVHN  190 (554)
Q Consensus       140 ~v~~~~~~~~~lV~Fya~wC~~C~~l~p~-~~~~a~~l~-~~~v~~~~Vd~~~  190 (554)
                      .+.+....++.+++|....|++|+++.|. +.++.+.+- ..++++...+..-
T Consensus        32 ~~~G~~~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p~   84 (226)
T 3f4s_A           32 KLLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPL   84 (226)
T ss_dssp             CEESCTTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECCC
T ss_pred             CccCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCCC
Confidence            34444456678999999999999999986 467777772 2248888777654

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=81.94  E-value=14  Score=29.13  Aligned_cols=79  Identities=9%  Similarity=0.069  Sum_probs=52.3

Q ss_pred             CceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChh
Q psy16770        260 NKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVP  338 (554)
Q Consensus       260 ~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~  338 (554)
                      +.+.+++|....-+........+ +....+.|..++.+...+++++++|+ .. .|+++  .++..     +..+.++..
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~~i~~~~vdi~~~~~~el~~~~g-~~-vP~l~--~~g~~-----~~~~g~~~~   85 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYK-FD-IPVFH--LNGQF-----LMMHRVNTS   85 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSS-SS-CSEEE--ESSSE-----EEESSCCHH
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhhhCCeEEEEECCCcchHHHHHHHC-CC-CCEEE--ECCEE-----EEecCCCHH
Confidence            45667777665555555555444 33455999999987435688999999 75 99763  33221     234557888


Q ss_pred             HHHhHHhcC
Q psy16770        339 TLQDITDNN  347 (554)
Q Consensus       339 ~l~~fi~~~  347 (554)
                      .|.++|+..
T Consensus        86 ~l~~~l~~~   94 (100)
T 1wjk_A           86 KLEKQLRKL   94 (100)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHHHH
Confidence            899998754

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=81.49  E-value=1.7  Score=39.83  Aligned_cols=46  Identities=7%  Similarity=0.146  Sum_probs=36.4

Q ss_pred             CcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        190 NEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       190 ~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      .+...++++||.| +||++++.+|+......|..+.+.+.+.+.+.+
T Consensus       164 ~~~~~a~~~gv~g-~Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~  209 (216)
T 2in3_A          164 AGFQRVAQWGISG-FPALVVESGTDRYLITTGYRPIEALRQLLDTWL  209 (216)
T ss_dssp             HHHHHHHHTTCCS-SSEEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcc-cceEEEEECCEEEEeccCCCCHHHHHHHHHHHH
Confidence            3567789999998 999999889986545566668888988887654

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=81.06  E-value=11  Score=30.64  Aligned_cols=45  Identities=4%  Similarity=0.076  Sum_probs=32.8

Q ss_pred             CChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        299 DSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       299 ~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      .+..++++|++.+ .|+++++.++..-  .....+..+.+.|.++|+.
T Consensus        92 ~~~~~~~~~~v~~-~P~~~lid~~G~i--~~~~~g~~~~~~l~~~l~~  136 (138)
T 4evm_A           92 PSGKLLETYGVRS-YPTQAFIDKEGKL--VKTHPGFMEKDAILQTLKE  136 (138)
T ss_dssp             TTCHHHHHTTCCS-SSEEEEECTTCCE--EEEEESCCCHHHHHHHHHH
T ss_pred             cchHHHHHcCccc-CCeEEEECCCCcE--EEeecCCCcHHHHHHHHHh
Confidence            3567999999997 9999999654432  2345677788888887764

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=80.98  E-value=9.3  Score=31.83  Aligned_cols=43  Identities=14%  Similarity=0.282  Sum_probs=31.3

Q ss_pred             ceEEEEEc-CCCCcchhHHHHHHHHHhhccC-CCCceEEEEEecccc
Q psy16770        369 KLCVVLFS-EDSPEHDASRHTLRRFAQESRF-VHNNIAFMYVFIEKQ  413 (554)
Q Consensus       369 ~lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~-~~~~v~F~~vd~~~q  413 (554)
                      +..+|.|. .....+......|.+++++  + .+..+.|+.|+.+..
T Consensus        34 k~vll~F~~~~C~~C~~~~~~l~~l~~~--~~~~~~~~~v~v~~d~~   78 (148)
T 3fkf_A           34 RYLLLNFWASWCDPQPEANAELKRLNKE--YKKNKNFAMLGISLDID   78 (148)
T ss_dssp             SEEEEEEECGGGCCCHHHHHHHHHHHHH--TTTCTTEEEEEEECCSC
T ss_pred             cEEEEEEECCCCHHHHHHhHHHHHHHHH--hcCCCCeEEEEEECCCC
Confidence            44455444 4556788888999999998  8 665699999887653

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=80.68  E-value=5.2  Score=33.95  Aligned_cols=96  Identities=17%  Similarity=0.056  Sum_probs=53.0

Q ss_pred             eEEEEEc-CCCCcchhHHHHHHHHHhhccCCCCceEEEEEec--ccchHHHHhhCCCCC---------------Cc--cc
Q psy16770        370 LCVVLFS-EDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFI--EKQPEFVNALTSPED---------------SS--EI  429 (554)
Q Consensus       370 lcvvl~~-~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~--~~q~~~~~~~~~~~~---------------~~--~~  429 (554)
                      ..+|.|. .....+......|.+++++  +   .+.|+.|+.  +...+-...+....+               ..  -.
T Consensus        32 ~vll~f~~~~C~~C~~~~~~l~~l~~~--~---~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (154)
T 3ia1_A           32 PAVIVFWASWCTVCKAEFPGLHRVAEE--T---GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFK  106 (154)
T ss_dssp             SEEEEEECTTCHHHHHHHHHHHHHHHH--H---CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSS
T ss_pred             eEEEEEEcccChhHHHHHHHHHHHHHH--c---CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhC
Confidence            3444443 4555667777788888888  7   477777777  222222222211000               00  00


Q ss_pred             cceEEEEEEecCCCe-eEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCC
Q psy16770        430 SLHIAAMWRMDYKKI-KYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYN  480 (554)
Q Consensus       430 ~~~~~~v~~~~~~~~-ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~  480 (554)
                      ...+|.++..+.++. .+. ..|         ..+.+.|.++|++..++..+
T Consensus       107 v~~~P~~~lid~~G~i~~~-~~g---------~~~~~~l~~~l~~~~~~~~~  148 (154)
T 3ia1_A          107 VLGQPWTFVVDREGKVVAL-FAG---------RAGREALLDALLLAGADLEG  148 (154)
T ss_dssp             BCSSCEEEEECTTSEEEEE-EES---------BCCHHHHHHHHHHTTCCC--
T ss_pred             CCcccEEEEECCCCCEEEE-EcC---------CCCHHHHHHHHHhccCcccc
Confidence            135666555566663 443 334         24778999999999988875

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=80.16  E-value=11  Score=32.21  Aligned_cols=60  Identities=10%  Similarity=0.088  Sum_probs=37.9

Q ss_pred             CceEEEEEEccC-----------------CCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCC--CChhHHHhHHhc
Q psy16770        286 TTIVFGVIVYDQ-----------------EDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNS--IPVPTLQDITDN  346 (554)
Q Consensus       286 ~~v~Fg~v~~~~-----------------~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~--~~~~~l~~fi~~  346 (554)
                      ..+.|..++.+.                 ..+..+++.|++.. .|+++++.++..-.  ....|.  .....+.+.+..
T Consensus        73 ~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-~P~~~lid~~G~i~--~~~~G~~~~~~~~~~~~~~~  149 (158)
T 3hdc_A           73 GDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANR-LPDTFIVDRKGIIR--QRVTGGIEWDAPKVVSYLKS  149 (158)
T ss_dssp             TSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCS-SSEEEEECTTSBEE--EEEESCCCTTSHHHHHHHHT
T ss_pred             CCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCC-cceEEEEcCCCCEE--EEEeCCCccchHHHHHHHHh
Confidence            567887777653                 12568999999997 99988886544322  223333  344456666665


Q ss_pred             CC
Q psy16770        347 NP  348 (554)
Q Consensus       347 ~~  348 (554)
                      +.
T Consensus       150 ~~  151 (158)
T 3hdc_A          150 LE  151 (158)
T ss_dssp             TC
T ss_pred             hc
Confidence            54

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=80.09  E-value=1.4  Score=39.84  Aligned_cols=43  Identities=9%  Similarity=-0.023  Sum_probs=32.7

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV  188 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~  188 (554)
                      ..++++|+|....|++|+++.+...++.+++.+.++++.--+.
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~   55 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQ   55 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEEc
Confidence            3457788899999999999999888877766322488776664

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=80.04  E-value=1.6  Score=36.57  Aligned_cols=66  Identities=9%  Similarity=0.169  Sum_probs=39.6

Q ss_pred             EEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHH----HHHh--------CCcCCCCcceeccCCeEEE
Q psy16770        150 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGL----ARRL--------GVGSQLPQIALLTDGRTSF  217 (554)
Q Consensus       150 ~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l----~~~~--------~v~~~~Pti~~~~~g~~~~  217 (554)
                      +++.|.+++|+.|+-... =..+-..|+..||.|-.+|.+.++..    .++.        |... +|.  +|.+|.   
T Consensus         1 ~V~vYtt~~c~~c~~kk~-c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~t-vPQ--IFi~~~---   73 (121)
T 1u6t_A            1 VIRVYIASSSGSTAIKKK-QQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPL-PPQ--IFNESQ---   73 (121)
T ss_dssp             CEEEEECTTCSCHHHHHH-HHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCC-SCE--EEETTE---
T ss_pred             CEEEEecCCCCCccchHH-HHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhccccccccCCCcC-CCE--EEECCE---
Confidence            356788999999941110 11233344455799999999877544    3455        4554 664  445664   


Q ss_pred             EeCCc
Q psy16770        218 FKEPS  222 (554)
Q Consensus       218 y~~g~  222 (554)
                      +.||.
T Consensus        74 ~iGG~   78 (121)
T 1u6t_A           74 YRGDY   78 (121)
T ss_dssp             EEEEH
T ss_pred             EEech
Confidence            45664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	554
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	4e-20
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	2e-18
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	4e-17
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-15
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	7e-15
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	8e-15
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	1e-13
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	1e-11
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	8e-05
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	4e-04
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	0.004

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (203), Expect = 4e-20
 Identities = 33/72 (45%), Positives = 52/72 (72%), Gaps = 1/72 (1%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQ 79
          D Y+TLG+ R AS +EI++ Y+R  + +HPDKN +P A+EKF ++ EAY++LSD  +R+ 
Sbjct: 4  DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63

Query: 80 YDLFGTTDGFSG 91
          +D +G  +G  G
Sbjct: 64 FDRYG-EEGLKG 74

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKN-NDPTAQEKFLQLTEAYNILSDAERRK 78
          D YE LGV +TA  +EIRK YKRL +++HPD+N  D  A+ KF ++ EAY +L+D+++R 
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63

Query: 79 QYDLFG 84
           YD +G
Sbjct: 64 AYDQYG 69

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.3 bits (182), Expect = 4e-17
 Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 8/79 (10%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEK-------FLQLTEAYNILS 72
          D Y  LG   +A++ ++++ Y++L++ +HPDK +              F+++ +A+ IL 
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

Query: 73 DAERRKQYDLFGTTDGFSG 91
          + E +K+YDL   +   SG
Sbjct: 77 NEETKKKYDLQR-SGPSSG 94

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 69.6 bits (170), Expect = 1e-15
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 18 SLDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 75
               E L +PR        +++ YK+  +  HPDK           +L   +       
Sbjct: 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEV 66

Query: 76 RRKQYDLFGTT 86
             + +L GT 
Sbjct: 67 YNLRMNLGGTG 77

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 67.4 bits (164), Expect = 7e-15
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 19 LDPYETLGVPRTASL--QEIRKNYKRLVVEWHPDKNNDPTAQEK------FLQLTEAYNI 70
          +D +   G+P    L  Q +   ++ L  ++HPDK    +  E+         + +A+  
Sbjct: 1  MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 71 LSDAERRKQYDL 82
          L     R +Y L
Sbjct: 61 LRHPLMRAEYLL 72

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 68.7 bits (167), Expect = 8e-15
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 18  SLDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAE 75
           SL   + LG+ R+A  ++  +RK Y +   E+HPDK  D    +K       Y  + D  
Sbjct: 7   SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKM---NTLYKKMEDGV 63

Query: 76  RRKQYDLFGTTDGFSGQDSASRNFHNHMYNPF--DDVFSEGFNFPFEEHD 123
           +      FG     +   +   +     +N F  +++F        ++  
Sbjct: 64  KYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEEMPSSDDEA 113

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.6 bits (157), Expect = 1e-13
 Identities = 12/65 (18%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQ----EKFLQLTEAYNILSDAE 75
            ++ +G+    + ++++K Y++ V+  HPDK      +      F++L +A++   +  
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93

Query: 76 RRKQY 80
          ++  Y
Sbjct: 94 QKPLY 98

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (141), Expect = 1e-11
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 20 DPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTA--QEKFLQLTEAYNILSDAERR 77
          +    +         E +K  +RL ++WHPDKN +      E F  L    N L      
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76

Query: 78 KQYD 81
           Q  
Sbjct: 77 DQNA 80

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 40.4 bits (94), Expect = 8e-05
 Identities = 6/68 (8%), Positives = 17/68 (25%)

Query: 140 NYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLG 199
           ++I +      L+               +  +L+ E            +   + +  R  
Sbjct: 23  DWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFN 82

Query: 200 VGSQLPQI 207
           V      +
Sbjct: 83  VRRFPATL 90

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 6/61 (9%), Positives = 14/61 (22%)

Query: 149 PHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA 208
             L+               +  +L+ E            +   + +  R GV      + 
Sbjct: 38  VVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLV 97

Query: 209 L 209
            
Sbjct: 98  F 98

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 3/64 (4%)

Query: 136 NFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA 195
               N    +   P L LF    C  C + + + +   D      +    + +       
Sbjct: 4   GSSGNLSASNRALPVLTLFTKAPCPLCDEAKEVLQPYKDR---FILQEVDITLPENSTWY 60

Query: 196 RRLG 199
            R  
Sbjct: 61  ERYK 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	554
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.86
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.85
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.85
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.84
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.84
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.84
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.84
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.83
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.82
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.77
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.76
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.75
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.75
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.74
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.74
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.73
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.72
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.72
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.72
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.72
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.72
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.71
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.71
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.7
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.68
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.68
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.67
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.66
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.66
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.61
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.59
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.57
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.57
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.53
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.51
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.5
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.37
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.21
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.13
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	99.05
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.01
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	98.99
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.9
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.9
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.88
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.87
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.82
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	98.81
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	98.8
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.77
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.74
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	98.74
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.6
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	98.59
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	98.48
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.38
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.3
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	98.25
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	98.09
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.07
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.04
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.02
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	98.0
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	97.95
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	97.89
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.88
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	97.85
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	97.81
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	97.75
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	97.73
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	97.67
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	97.6
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.54
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	97.54
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.54
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	97.49
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	97.45
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	97.43
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	97.36
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.34
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	97.31
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	97.29
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	97.28
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	97.22
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.18
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	97.16
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	97.14
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.11
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	97.11
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	97.05
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	97.04
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	97.02
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	97.01
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.0
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	96.99
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	96.9
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	96.89
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.8
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.74
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	96.72
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	96.72
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	96.71
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	96.7
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	96.61
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	96.6
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	96.47
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.41
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	96.37
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	96.36
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	96.32
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	96.2
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.11
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	96.02
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	95.98
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	95.94
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	95.84
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	95.72
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	95.68
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	95.64
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	95.63
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	95.49
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	95.26
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	95.07
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	94.93
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	94.67
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	94.63
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	93.48
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	92.96
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	92.71
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	92.68
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	92.58
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	92.57
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	92.43
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	88.2
d1wjka_	100	Thioredoxin-like structure containing protein C330	85.5
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	85.23
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	83.55
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	80.52

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.86  E-value=5e-22  Score=167.17  Aligned_cols=105  Identities=18%  Similarity=0.389  Sum_probs=96.1

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+++||++||+..|.  +++++++|.|||+||++|+++.|.|++++.++.+ .+.+++|||++++.+|++|+|++ +||+
T Consensus         3 ~V~~lt~~~f~~~v~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~I~~-~Pt~   78 (108)
T d1thxa_           3 GVITITDAEFESEVL--KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDPNPTTVKKYKVEG-VPAL   78 (108)
T ss_dssp             SEEECCGGGHHHHTT--TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTTCHHHHHHTTCCS-SSEE
T ss_pred             CceECCHHHHHHHHH--hCCCcEEEEEECCCCCCccccchHHHHHHHhcCC-cceeceecccccHHHHHHhcccC-CCEE
Confidence            588999999998876  4578999999999999999999999999999987 49999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++|++|+.+.++.|.++.+.|.+|+.+.+
T Consensus        79 ~~~~~g~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d1thxa_          79 RLVKGEQILDSTEGVISKDKLLSFLDTHL  107 (108)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            99999998877667779999999998864

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=6.8e-22  Score=153.73  Aligned_cols=70  Identities=47%  Similarity=0.858  Sum_probs=65.5

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNN-DPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~-~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|+|+||||+++||.++||+|||+++++||||+++ ++.+.++|.+|++||+||+||.+|..||.+|..+
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   72 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA   72 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccc
Confidence            579999999999999999999999999999999987 4677889999999999999999999999999753

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.85  E-value=5.2e-22  Score=171.38  Aligned_cols=108  Identities=19%  Similarity=0.189  Sum_probs=93.4

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEccccccc------ccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFAC------LQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGV  200 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C------~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v  200 (554)
                      +.+++||.+||++.|.   +++.++|+||||||+||      ..+.+.++++++.+++.++.+++|||++++.+|++++|
T Consensus        11 ~~V~~L~~~nf~~~l~---~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I   87 (124)
T d1a8ya1          11 DRVINVNAKNYKNVFK---KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGL   87 (124)
T ss_dssp             CCCEECCTTTHHHHHH---HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTC
T ss_pred             CccEECCHHHHHHHHH---hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhcccc
Confidence            3588999999999884   56789999999999974      44556677777777766799999999999999999999


Q ss_pred             cCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        201 GSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       201 ~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      ++ ||||++|++|+++.|.|+ +++++|++|+.+.+.++
T Consensus        88 ~~-yPTi~~f~~g~~~~y~G~-r~~~~l~~fi~~~l~~P  124 (124)
T d1a8ya1          88 TE-EDSIYVFKEDEVIEYDGE-FSADTLVEFLLDVLEDP  124 (124)
T ss_dssp             CS-TTCEEEEESSSEEECCSC-CSHHHHHHHHHHHHSCS
T ss_pred             cc-CCcEEEeccCccEEeeCC-CCHHHHHHHHHHhcCCC
Confidence            98 999999999999988866 69999999999987653

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.2e-21  Score=167.86  Aligned_cols=106  Identities=13%  Similarity=0.290  Sum_probs=94.9

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      .+++||.++|++.|   +++++++|+||+|||++|+++.|.|+++++.+.+.++.+++|||+.++++|++++|.+ +||+
T Consensus        11 ~v~~lt~~~f~~~i---~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~-~Pti   86 (119)
T d2b5ea4          11 AVVKLATDSFNEYI---QSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPG-FPSL   86 (119)
T ss_dssp             SCEECCTTTHHHHH---TTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCS-SSEE
T ss_pred             ccEEcCHHHHHHHH---hcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhcccc-CCeE
Confidence            68899999999988   4678999999999999999999999999999976569999999999999999999997 9999


Q ss_pred             eeccCCeE---EEEeCCcccHHHHHHHHHHhCCC
Q psy16770        208 ALLTDGRT---SFFKEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       208 ~~~~~g~~---~~y~~g~~~~~~i~~fl~~~~~~  238 (554)
                      ++|++|+.   ..|.| .++.++|++|+++++.|
T Consensus        87 ~~f~~g~~~~~~~y~g-~~~~~~l~~fi~k~~~P  119 (119)
T d2b5ea4          87 KIFKNSDVNNSIDYEG-PRTAEAIVQFMIKQSQP  119 (119)
T ss_dssp             EEEETTCTTCEEECCS-CCSHHHHHHHHHHHTSC
T ss_pred             EEEECCEEeeeEEecC-CCCHHHHHHHHHHhhCC
Confidence            99988854   34554 46999999999998765

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.1e-21  Score=165.08  Aligned_cols=106  Identities=21%  Similarity=0.459  Sum_probs=96.7

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      +.+++||.++|++.|.  +++++++|.||||||++|+.+.|.+.+++.++.+ .+.++.+|+++++.+|++|+|++ +||
T Consensus         2 ~~v~~lt~~~f~~~v~--~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~d~~~~l~~~~~v~~-~PT   77 (108)
T d2trxa_           2 DKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRG-IPT   77 (108)
T ss_dssp             TTEEECCTTTHHHHTT--TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTCTTHHHHTTCCS-SSE
T ss_pred             CCceECCHHHHHHHHH--hCCCcEEEEEECCCCCCccccCcHHHHHHHHhhc-ceeeeeccccchhhHHHHhCCCc-EEE
Confidence            5688999999999876  4578999999999999999999999999999876 59999999999999999999997 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +++|++|+.+..+.|.++.+.|.+|+.+++
T Consensus        78 ~~~~~~G~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          78 LLLFKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            999999998877777779999999998764

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.84  E-value=1.5e-21  Score=163.02  Aligned_cols=104  Identities=14%  Similarity=0.376  Sum_probs=94.9

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      +.+||+++|++.|.  .++++++|.|||+||++|+++.|.++++++.+.+ .+.++.||++.++++|++|+|++ +||++
T Consensus         1 v~el~d~~f~~~v~--~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~v~~d~~~~l~~~~~V~~-~Pt~~   76 (104)
T d1fb6a_           1 VQDVNDSSWKEFVL--ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDEAPGIATQYNIRS-IPTVL   76 (104)
T ss_dssp             CEECCTTTHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHTTCCS-SSEEE
T ss_pred             CeECchhhHHHHHH--cCCCcEEEEEEcCccCCccccCchhHHHHHhhcC-ccceeEEecccchhhhhhcceee-eeEEE
Confidence            45799999999886  4578999999999999999999999999999987 48999999999999999999998 99999


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +|++|+.+....|.++.+.|.+|+.+++
T Consensus        77 ~~~~G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          77 FFKNGERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             EEETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EEEcCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            9999998877767779999999999864

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.84  E-value=1.6e-21  Score=163.20  Aligned_cols=103  Identities=17%  Similarity=0.345  Sum_probs=94.6

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      .++||.+||++.+   +++++++|.||||||++|+.+.|.++++++++.+ .+.+++|||+.++.+|++|+|.+ +||++
T Consensus         2 ~i~lt~~~f~~~i---~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~V~~-~Pt~~   76 (105)
T d1nw2a_           2 TMTLTDANFQQAI---QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDENPETTSQFGIMS-IPTLI   76 (105)
T ss_dssp             CEEECTTTHHHHT---TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTCHHHHHHTTCCB-SSEEE
T ss_pred             EEEECHHHHHHHH---hCCCcEEEEEECCCCCCcccccchhhhhhhhcCC-ceEEEEEECCCCcccHHHCCcce-eeEEE
Confidence            5789999999988   5678999999999999999999999999999987 49999999999999999999998 99999


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +|++|+.+....|.++.+.|.+++.+.+
T Consensus        77 ~~~~G~~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          77 LFKGGEPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHTTTTC
T ss_pred             EEECCEEEEEEECCCCHHHHHHHHHHHh
Confidence            9999998877777788999999988765

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.83  E-value=3.7e-21  Score=161.48  Aligned_cols=104  Identities=16%  Similarity=0.351  Sum_probs=94.4

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      +..+|.++|++.|.  .+++|++|.||||||++|+++.|.|.++++++.+ .+.+++|||+.++++|++|+|++ +||++
T Consensus         3 ~~~i~~~~f~~~v~--~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~V~~-~Pt~~   78 (107)
T d1dbya_           3 AGAVNDDTFKNVVL--ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDESPNVASEYGIRS-IPTIM   78 (107)
T ss_dssp             CEEECHHHHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTCHHHHHHHTCCS-SCEEE
T ss_pred             ceEecHHHHHHHHH--hCCCcEEEEEECCCCCCccccChHHHHHHHhhcc-cceEEEEecccchhHHHHhcccc-eEEEE
Confidence            45679999999986  4578999999999999999999999999999987 48999999999999999999998 99999


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +|++|+.+....|.++.+.|.+|+.+.+
T Consensus        79 ~~~~G~~v~~~~G~~~~~~l~~~i~~~L  106 (107)
T d1dbya_          79 VFKGGKKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             EESSSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEECCeEEEEEeCCCCHHHHHHHHHHhh
Confidence            9999998776667779999999999876

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.3e-21  Score=149.62  Aligned_cols=70  Identities=44%  Similarity=0.838  Sum_probs=66.9

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|+|+||||+++||.++||+||+++++++|||++.++.+.++|..|++||++|+||.+|+.||++|..+
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~   71 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence            3699999999999999999999999999999999999999999999999999999999999999998764

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.1e-21  Score=164.72  Aligned_cols=109  Identities=22%  Similarity=0.397  Sum_probs=96.3

Q ss_pred             cccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCcHHHHHHhCCcCC
Q psy16770        126 LFHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNEQGLARRLGVGSQ  203 (554)
Q Consensus       126 ~~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~~~l~~~~~v~~~  203 (554)
                      .++++.||.++|++.+   +++++++|.|||+||++|+.+.|.|.++++.+.+.  .+.++.|||+.++.+|.+++|.+ 
T Consensus         6 ~~~V~~l~~~~f~~~l---~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~-   81 (120)
T d1meka_           6 EDHVLVLRKSNFAEAL---AAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRG-   81 (120)
T ss_dssp             ETTEEECCTTTHHHHH---HHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCS-
T ss_pred             CCCeEEcCHHHHHHHH---hcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCcc-
Confidence            4578999999999877   46789999999999999999999999999998743  48999999999999999999998 


Q ss_pred             CCcceeccCCeE---EEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        204 LPQIALLTDGRT---SFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       204 ~Pti~~~~~g~~---~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      +||+++|++|+.   ..|. |.++.++|++||+++++|+
T Consensus        82 ~Pt~~~~~~G~~~~~~~~~-g~~~~~~l~~fi~~~~~p~  119 (120)
T d1meka_          82 YPTIKFFRNGDTASPKEYT-AGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             SSEEEEEESSCSSSCEECC-CCSSHHHHHHHHHTTSCCC
T ss_pred             CCeEEEEECCeEeeeEEec-CCCCHHHHHHHHHHhhCCC
Confidence            999999988854   3455 4568999999999999886

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=3.3e-19  Score=153.08  Aligned_cols=105  Identities=15%  Similarity=0.196  Sum_probs=87.8

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhC--CCCEEEEEEEecC-----cHHHHHHhCC
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELS--PLGVGFFTVHVHN-----EQGLARRLGV  200 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~--~~~v~~~~Vd~~~-----~~~l~~~~~v  200 (554)
                      .+++||..||++.|   ++++.+||+||||||+||+  .|+|+++++.+.  ...+.+++|||+.     ++++|++|+|
T Consensus         3 g~v~L~~~nFd~~v---~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i   77 (122)
T d2c0ga2           3 GCVDLDELSFEKTV---ERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKV   77 (122)
T ss_dssp             TCEECCTTTHHHHH---TTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTC
T ss_pred             ceEEcChHhHHHHH---hcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhc
Confidence            37899999999999   4678999999999999999  499999999875  2359999999974     6899999988


Q ss_pred             --cCCCCcceeccCCeE--EEE-eCCcccHHHHHHHHHHhCCC
Q psy16770        201 --GSQLPQIALLTDGRT--SFF-KEPSFSVQKMVEFFRLKLPY  238 (554)
Q Consensus       201 --~~~~Pti~~~~~g~~--~~y-~~g~~~~~~i~~fl~~~~~~  238 (554)
                        ++ |||+++|++|..  ..+ +.|.++.++|++|++++.+-
T Consensus        78 ~~~~-~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~~  119 (122)
T d2c0ga2          78 DDKN-FPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL  119 (122)
T ss_dssp             CTTS-CCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred             ccCC-CCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcCc
Confidence              56 999999988752  222 23557999999999998764

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.76  E-value=2.8e-19  Score=151.09  Aligned_cols=105  Identities=19%  Similarity=0.361  Sum_probs=92.5

Q ss_pred             cccc-ccccccccccC-CCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        129 KLST-THWNFEKNYIP-KSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       129 ~~~L-t~~~F~~~v~~-~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      ++.+ |.++|++.+.. ...+++++|+|||+||++|+.+.|.|+++++++.+ .+.|+.||+++++.+|++|+|++ +||
T Consensus         4 v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~v~~-~Pt   81 (112)
T d1ep7a_           4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDAVAAVAEAAGITA-MPT   81 (112)
T ss_dssp             EEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTTHHHHHHHTCCB-SSE
T ss_pred             EEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccc-eEEEEEeeccccccccccccccC-CCE
Confidence            5556 67888887743 13578999999999999999999999999999986 49999999999999999999998 999


Q ss_pred             ceeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        207 IALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +++|++|+.+....|. +.++|.+|+.++.
T Consensus        82 ~~~~~~G~~v~~~~G~-~~~~l~~~i~k~~  110 (112)
T d1ep7a_          82 FHVYKDGVKADDLVGA-SQDKLKALVAKHA  110 (112)
T ss_dssp             EEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEeCc-CHHHHHHHHHHHh
Confidence            9999999998887775 8899999998874

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2.3e-19  Score=145.43  Aligned_cols=69  Identities=30%  Similarity=0.687  Sum_probs=62.9

Q ss_pred             CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hhHHHHHHHHHHHHHHcCChHHHHhhhccCC
Q psy16770         17 VSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND-------PTAQEKFLQLTEAYNILSDAERRKQYDLFGT   85 (554)
Q Consensus        17 ~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~-------~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~   85 (554)
                      ...|||+||||+++|+.++||+||++|+++|||||++.       +.++++|++|++||++|+||.+|+.||..+.
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            45799999999999999999999999999999999864       3477889999999999999999999998654

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.75  E-value=9.7e-19  Score=147.61  Aligned_cols=104  Identities=18%  Similarity=0.332  Sum_probs=91.7

Q ss_pred             ccccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-cHHHHHHhCCcCCCC
Q psy16770        127 FHKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-EQGLARRLGVGSQLP  205 (554)
Q Consensus       127 ~~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-~~~l~~~~~v~~~~P  205 (554)
                      ..+.++|.++|.+.+.. +.+++++|.||++||++|+.+.|.|+++++++.+  +.+++||++. ++++|++|+|++ +|
T Consensus         6 g~v~~~~~d~f~~~l~~-~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~--v~~~~vd~~~~~~~l~~~~~V~~-~P   81 (112)
T d1f9ma_           6 GKVTEVNKDTFWPIVKA-AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD--VIFLKLDCNQENKTLAKELGIRV-VP   81 (112)
T ss_dssp             TSEEEECTTTHHHHHHT-CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSSTTHHHHHHHCCSS-SS
T ss_pred             eeeEEeCHHHHHHHHHH-cCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc--ceeecccccccchhhHhheeecc-CC
Confidence            35788999999988853 3467999999999999999999999999999874  7899999975 789999999998 99


Q ss_pred             cceeccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        206 QIALLTDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       206 ti~~~~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      |+++|++|+.+.+..|. +.+.+.++++++
T Consensus        82 t~~~~k~G~~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          82 TFKILKENSVVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEEEECCEEEEEEeCC-CHHHHHHHHHHc
Confidence            99999999998877776 568999999864

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.74  E-value=1.9e-19  Score=151.96  Aligned_cols=67  Identities=31%  Similarity=0.491  Sum_probs=61.5

Q ss_pred             CCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCCC
Q psy16770         18 SLDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTTD   87 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a--~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~~   87 (554)
                      ..|+|+||||+++|  +.++||+|||+||+++||||++++   ++|++|++||++|+|+.+|+.||.+|...
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~---e~F~~I~~AY~vLsd~~kR~~YD~~~~~~   75 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKKMNTLYKKMEDGVKYAHQPDFGGFW   75 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT---TTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhH---HHHHHHHHHHHHhCCHHHHHHHhccCCCC
Confidence            35899999999999  788999999999999999999754   68999999999999999999999988765

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.74  E-value=2.7e-19  Score=152.11  Aligned_cols=106  Identities=16%  Similarity=0.258  Sum_probs=86.4

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCC-EEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLG-VGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~-v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      .|..||.+||++.|.  +++++|||+||||||+||+++.|.|+++++.+.... ..+..+++.....+|.+++|++ |||
T Consensus         3 ~V~~lt~~nF~~~v~--~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~Pt   79 (116)
T d2djja1           3 PVTVVVAKNYNEIVL--DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQG-FPT   79 (116)
T ss_dssp             SSEECCTTTTTTSSS--CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSS-SSE
T ss_pred             CcEEcccCCHHHHHh--cCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccC-CCE
Confidence            478899999999986  467899999999999999999999999999997542 2234555555666678899997 999


Q ss_pred             ceeccCCe---EEEEeCCcccHHHHHHHHHHhCC
Q psy16770        207 IALLTDGR---TSFFKEPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       207 i~~~~~g~---~~~y~~g~~~~~~i~~fl~~~~~  237 (554)
                      |++|++|+   ...|.|. ++.++|++||.++..
T Consensus        80 i~~f~~g~~~~~~~~~g~-~~~~~l~~fi~~~~~  112 (116)
T d2djja1          80 IKLYPAGAKGQPVTYSGS-RTVEDLIKFIAENGK  112 (116)
T ss_dssp             EEEECSSCTTSCCCCCCC-SCHHHHHHHHHHTSS
T ss_pred             EEEEECCccCceEEecCC-CCHHHHHHHHHHccC
Confidence            99998775   3455544 689999999998764

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.73  E-value=1.4e-18  Score=144.46  Aligned_cols=97  Identities=14%  Similarity=0.351  Sum_probs=87.1

Q ss_pred             cccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceecc
Q psy16770        132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLT  211 (554)
Q Consensus       132 Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~  211 (554)
                      -|.++|++.+   +++++++|.||++||++|+.+.|.++++++++.+  +.++++|+++++++|++|+|.+ +||+++|+
T Consensus         6 ~s~~~f~~~i---~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~vd~d~~~~~~~~~~V~~-~Pt~i~~k   79 (103)
T d1syra_           6 TSQAEFDSII---SQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK--MVFIKVDVDEVSEVTEKENITS-MPTFKVYK   79 (103)
T ss_dssp             CSHHHHHHHH---HHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTTHHHHHHTTCCS-SSEEEEEE
T ss_pred             CCHHHHHHHH---hCCCcEEEEEeCCcccCcccccccchhhhhcccc--eEEEeeccccCcceeeeeeeec-ceEEEEEE
Confidence            3678898888   4678999999999999999999999999999864  6899999999999999999997 99999999


Q ss_pred             CCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        212 DGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       212 ~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      +|+.+....|. +.+.|.+|+.++
T Consensus        80 ~G~~v~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          80 NGSSVDTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             TTEEEEEEESC-CHHHHHHHHHTT
T ss_pred             CCEEEEEEeCc-CHHHHHHHHHhh
Confidence            99988777675 679999999875

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.72  E-value=2.2e-18  Score=146.01  Aligned_cols=100  Identities=18%  Similarity=0.327  Sum_probs=88.2

Q ss_pred             ccccccccccC-CCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceecc
Q psy16770        133 THWNFEKNYIP-KSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLT  211 (554)
Q Consensus       133 t~~~F~~~v~~-~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~  211 (554)
                      |.++|++.+.. .+++++++|+|||+||++|+.+.|.++++++.+.  ++.++.||+++++++|++|+|++ +||+++|+
T Consensus        13 s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~--~~~~~~vd~~~~~~l~~~~~V~~-~Pt~~~~~   89 (114)
T d1xfla_          13 TVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDELKSVASDWAIQA-MPTFMFLK   89 (114)
T ss_dssp             SHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTSHHHHHHTTCCS-SSEEEEEE
T ss_pred             CHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhccccc--ccceeEEEeeeceeeccccceee-eEEEEEEE
Confidence            67778776642 2457899999999999999999999999999986  48999999999999999999998 99999999


Q ss_pred             CCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        212 DGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       212 ~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +|+.+....|. +.++|.+++.+++
T Consensus        90 ~G~~v~~~~G~-~~~~l~~~i~k~l  113 (114)
T d1xfla_          90 EGKILDKVVGA-KKDELQSTIAKHL  113 (114)
T ss_dssp             TTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             CCEEEEEEeCc-CHHHHHHHHHHhh
Confidence            99988777675 6799999999875

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.6e-18  Score=143.27  Aligned_cols=99  Identities=19%  Similarity=0.322  Sum_probs=87.0

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD  212 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~  212 (554)
                      |.++|++.+.. +.+++++|+|||+||++|+.+.|.++++++.+.+  +.+++||++++++++++++|++ +||+++|++
T Consensus         7 s~~~f~~~l~~-~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~vd~d~~~~~~~~~~V~~-~Pt~~~~~~   82 (105)
T d2ifqa1           7 SKTAFQEALDA-AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDVDDCQDVASECEVKC-MPTFQFFKK   82 (105)
T ss_dssp             SHHHHHHHHHH-TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTCHHHHHHTTCCB-SSEEEEEET
T ss_pred             CHHHHHHHHHh-CCCCEEEEEEEcCCccchhhhhhhhhhhcccccc--ceeeecccccCHhHHHHcCceE-EEEEEEEEC
Confidence            45678777743 3568999999999999999999999999999864  6799999999999999999998 999999999


Q ss_pred             CeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        213 GRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       213 g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      |+.+....|. +.+.|.+++.+.+
T Consensus        83 G~~v~~~~G~-~~~~l~~~i~~~l  105 (105)
T d2ifqa1          83 GQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             TEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             CEEEEEEeCC-CHHHHHHHHHhhC
Confidence            9998888775 6799999998754

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.5e-19  Score=159.16  Aligned_cols=106  Identities=17%  Similarity=0.366  Sum_probs=88.9

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC--CEEEEEEEecCcHHHHHHhCCcCCCC
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL--GVGFFTVHVHNEQGLARRLGVGSQLP  205 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~--~v~~~~Vd~~~~~~l~~~~~v~~~~P  205 (554)
                      .++.|+.+||++.|.  +.+++|+|.||||||++|+++.|.|+++++.+.+.  .+.++.+|++  ..+|.+++|++ +|
T Consensus        13 ~V~~l~~~nf~~~v~--~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~--~~~~~~~~v~~-~P   87 (140)
T d2b5ea1          13 SVFQLVGKNHDEIVN--DPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT--ENDVRGVVIEG-YP   87 (140)
T ss_dssp             SEEEECTTTHHHHHH--CTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG--GCCCSSCCCSS-SS
T ss_pred             CcEEecCcCHHHHHh--cCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc--chhcccccccc-CC
Confidence            589999999999986  35679999999999999999999999999988632  3667666665  45899999997 99


Q ss_pred             cceeccCCeE---EEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        206 QIALLTDGRT---SFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       206 ti~~~~~g~~---~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      |+++|++|+.   +.|.|. ++.++|++||.+.....
T Consensus        88 tl~~f~~g~~~~~~~y~G~-~t~~~l~~fi~~~~~~~  123 (140)
T d2b5ea1          88 TIVLYPGGKKSESVVYQGS-RSLDSLFDFIKENGHFD  123 (140)
T ss_dssp             EEEEECCTTSCCCCBCCSC-CCHHHHHHHHHHHCTTC
T ss_pred             eEEEEECCEEcceeEeCCC-CCHHHHHHHHHHcCCCC
Confidence            9999988854   345554 69999999999987655

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.3e-18  Score=143.00  Aligned_cols=100  Identities=17%  Similarity=0.269  Sum_probs=89.3

Q ss_pred             cccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceecc
Q psy16770        132 TTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLT  211 (554)
Q Consensus       132 Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~  211 (554)
                      -|.++|++.+.. +++++++|.|||+||++|+++.|.|+++++++.  ++.|++||++++++++++|+|++ +||+++|+
T Consensus         7 ~s~~~f~~~l~~-~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~--~~~f~~vd~d~~~~l~~~~~v~~-~Pt~~~~~   82 (107)
T d1gh2a_           7 GSDPDFQPELSG-AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQCQGTAATNNISA-TPTFQFFR   82 (107)
T ss_dssp             CSGGGHHHHHHH-TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTSHHHHHHTTCCS-SSEEEEEE
T ss_pred             CCHHHHHHHHHh-CCCCEEEEEEECCCCCCccccchhhhccccccc--cccccccccccchhhhhhcCcee-ceEEEEEE
Confidence            467889888753 347799999999999999999999999999987  48999999999999999999997 99999999


Q ss_pred             CCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        212 DGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       212 ~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +|+.+....|. +.+.|.+++++.+
T Consensus        83 ~G~~v~~~~G~-~~~~l~~~i~k~l  106 (107)
T d1gh2a_          83 NKVRIDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             TTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCC-CHHHHHHHHHHhh
Confidence            99998887775 8899999998864

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=3.5e-18  Score=144.01  Aligned_cols=104  Identities=13%  Similarity=0.316  Sum_probs=90.4

Q ss_pred             cccc-ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLST-THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~L-t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      +.++ +.++|+..+.. +++++++|.|||+||++|+.+.|.|+++++++.+. +.++.||++++++++++|+|++ +||+
T Consensus         7 v~~i~~~~~~~~~l~~-~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~~~~~i~~d~~~~l~~~~~V~~-~Pt~   83 (111)
T d1xwaa_           7 VYQVKDKADLDGQLTK-ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN-VVVLKVDVDECEDIAMEYNISS-MPTF   83 (111)
T ss_dssp             EEECCSHHHHHHHHHH-HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTTCHHHHHHTTCCS-SSEE
T ss_pred             EEEECCHHHHHHHHHh-cCCCEEEEEEECCcccCccccchhHHHHhhhcccc-eEEEEEEeecCcchhhcCCCcc-ccEE
Confidence            4555 45788887753 35789999999999999999999999999999874 9999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      ++|++|+.+....|. +.+.|.+||++++
T Consensus        84 ~~~~~G~~v~~~~G~-~~~~l~~~I~~~l  111 (111)
T d1xwaa_          84 VFLKNGVKVEEFAGA-NAKRLEDVIKANI  111 (111)
T ss_dssp             EEEETTEEEEEEESC-CHHHHHHHHHHTC
T ss_pred             EEEECCEEEEEEeCC-CHHHHHHHHHhcC
Confidence            999999988777776 5588999998764

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.72  E-value=3.2e-18  Score=144.75  Aligned_cols=88  Identities=20%  Similarity=0.405  Sum_probs=81.3

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCccc
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFS  224 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~  224 (554)
                      +++++++|.|||+||++|+.+.|.|+++++++.  ++.++.||+++++.+|++|+|++ +||+++|++|+.+.+..|. +
T Consensus        24 ~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~d~~~~l~~~~~I~~-~Pt~~~~k~G~~v~~~~G~-~   99 (113)
T d1ti3a_          24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDELKAVAEEWNVEA-MPTFIFLKDGKLVDKTVGA-D   99 (113)
T ss_dssp             TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTCHHHHHHHHCSS-TTEEEEEETTEEEEEEECC-C
T ss_pred             cCCCEEEEEEEcCccccchhhhhhhhhhhccCC--CceEEeeeeeccccccccCeecc-cceEEEEECCEEEEEEcCC-C
Confidence            567899999999999999999999999999986  48999999999999999999997 9999999999998888885 7


Q ss_pred             HHHHHHHHHHhC
Q psy16770        225 VQKMVEFFRLKL  236 (554)
Q Consensus       225 ~~~i~~fl~~~~  236 (554)
                      .++|.+||.++.
T Consensus       100 ~~~l~~~i~k~a  111 (113)
T d1ti3a_         100 KDGLPTLVAKHA  111 (113)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            799999998863

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.71  E-value=4.2e-18  Score=143.86  Aligned_cols=100  Identities=18%  Similarity=0.233  Sum_probs=87.3

Q ss_pred             cccc-ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        129 KLST-THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       129 ~~~L-t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      ++++ |.++|++.+   +++++++|+|||+||++|+++.|.++++++++.  ++.|++||+++++++|++|||.+ +||+
T Consensus        10 vi~i~s~~~~~~~~---~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~~~l~~~~~V~~-~Pt~   83 (113)
T d1r26a_          10 VVDVYSVEQFRNIM---SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADNNSEIVSKCRVLQ-LPTF   83 (113)
T ss_dssp             CEEECCHHHHHHHH---HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTTCHHHHHHTTCCS-SSEE
T ss_pred             eEEeCCHHHHHHHH---cCCCeEEEEEECCCCccchhhceeccccccccc--cccccccccccchhhHHHccccC-CCEE
Confidence            4444 678898887   467899999999999999999999999999986  58999999999999999999997 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      ++|++|+.+....|. +.+.+.+++++.
T Consensus        84 ~~~~~G~~v~~~~G~-~~~~l~~~l~~~  110 (113)
T d1r26a_          84 IIARSGKMLGHVIGA-NPGMLRQKLRDI  110 (113)
T ss_dssp             EEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCC-CHHHHHHHHHHH
Confidence            999999998776665 567787777654

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.9e-18  Score=149.66  Aligned_cols=108  Identities=9%  Similarity=0.078  Sum_probs=97.4

Q ss_pred             cccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCccee
Q psy16770        130 LSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIAL  209 (554)
Q Consensus       130 ~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~  209 (554)
                      ..++..+|+..+.. ..+++++|.|||+||++|+++.|.+.++++++.+..+.+++|||+.++++|++|+|.+ +||+++
T Consensus        20 ~~~~~~~~d~~~~~-~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~-~PT~~~   97 (132)
T d2hfda1          20 TPVSESRLDDWLTQ-APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFR-FPATLV   97 (132)
T ss_dssp             EEECHHHHHHHHHH-CSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCS-CCEEEE
T ss_pred             cccccccHHHHHHh-CCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCc-ceeEEE
Confidence            35678889887752 3457899999999999999999999999999987668999999999999999999997 999999


Q ss_pred             ccCCeEEEEeCCcccHHHHHHHHHHhCCCC
Q psy16770        210 LTDGRTSFFKEPSFSVQKMVEFFRLKLPYK  239 (554)
Q Consensus       210 ~~~g~~~~y~~g~~~~~~i~~fl~~~~~~~  239 (554)
                      |++|+.+....|.++.+++++++...+.+.
T Consensus        98 ~~~G~~v~~~~G~~~~~~l~~~i~~ll~~~  127 (132)
T d2hfda1          98 FTGGNYRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_dssp             EETTEEEEEECCCSCHHHHHHHHHHHHSCS
T ss_pred             EEcCcEeeeecCCCCHHHHHHHHHHHhCcc
Confidence            999999999989899999999999988776

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=2.7e-18  Score=147.29  Aligned_cols=101  Identities=17%  Similarity=0.207  Sum_probs=85.3

Q ss_pred             cccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC------CEEEEEEEecCcHHHHHHhC--
Q psy16770        128 HKLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL------GVGFFTVHVHNEQGLARRLG--  199 (554)
Q Consensus       128 ~~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~------~v~~~~Vd~~~~~~l~~~~~--  199 (554)
                      .+++||.+||++.|   ++++.+||+||+|||.+|+  .|+|+++|+.+++.      .|.++.+||+.++.+|.+++  
T Consensus         5 ~~v~L~~~nFd~~i---~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~   79 (122)
T d1g7ea_           5 GALPLDTVTFYKVI---PKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLD   79 (122)
T ss_dssp             SSCSCSHHHHHHHG---GGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCS
T ss_pred             ceEECCHHhHHHHH---hhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhccc
Confidence            48999999999999   4678999999999999986  49999999998753      25556668888999999976  


Q ss_pred             CcCCCCcceeccCCe---EEEEeCCcccHHHHHHHHHHh
Q psy16770        200 VGSQLPQIALLTDGR---TSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       200 v~~~~Pti~~~~~g~---~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      |++ ||||++|++|+   +..|.|. ++.++|++|++++
T Consensus        80 I~~-yPTi~~f~~G~~~~~~~y~G~-rt~~~l~~fi~~~  116 (122)
T d1g7ea_          80 KES-YPVFYLFRDGDFENPVPYSGA-VKVGAIQRWLKGQ  116 (122)
T ss_dssp             SSS-CEEEEEEESSCCCCCEEEESC-CCHHHHHHHHHTT
T ss_pred             ccC-CCeEEEEecCcccCceecCCC-CCHHHHHHHHHhc
Confidence            777 99999999885   3567765 6899999999987

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.68  E-value=3.5e-17  Score=136.74  Aligned_cols=101  Identities=14%  Similarity=0.092  Sum_probs=81.9

Q ss_pred             cccccccccccCCCCCCc-EEEEEEcccccccccchHHHHHHHHHh---CCCCEEEEEEEecCcHHHHHHhCCcCCCCcc
Q psy16770        132 TTHWNFEKNYIPKSYTTP-HLILFYSDWCFACLQVEPIFKKLMDEL---SPLGVGFFTVHVHNEQGLARRLGVGSQLPQI  207 (554)
Q Consensus       132 Lt~~~F~~~v~~~~~~~~-~lV~Fya~wC~~C~~l~p~~~~~a~~l---~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti  207 (554)
                      |+++.++...   ..+++ .++.||||||++|+++.|.++++|.+.   ....+.+..||+++++++|++|+|.+ +||+
T Consensus         2 l~~~~~e~~~---~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~-vPTi   77 (107)
T d1a8la2           2 LMDETKQAIR---NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMA-VPKI   77 (107)
T ss_dssp             CCHHHHHHHT---TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCS-SCEE
T ss_pred             CCHHHHHHHH---hcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccccccccccccccc-ceEE
Confidence            5555555443   23444 566799999999999999999998652   23359999999999999999999998 9999


Q ss_pred             eeccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        208 ALLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       208 ~~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +++++|+......|.++.+.+++++.+.+
T Consensus        78 ~i~~~G~~~~~~~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          78 VIQVNGEDRVEFEGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             EEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEeCCeEEEEEECCCCHHHHHHHHHHhh
Confidence            99999988766666679999999998764

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.68  E-value=5.6e-18  Score=131.54  Aligned_cols=66  Identities=21%  Similarity=0.335  Sum_probs=60.3

Q ss_pred             CCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHcCChHHHHhhhccCCC
Q psy16770         18 SLDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDPTAQEKFLQLTEAYNILSDAERRKQYDLFGTT   86 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a--~~~~ik~ay~~l~~~~hPd~~~~~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~~   86 (554)
                      ..++|+||||++++  +.++||+|||+++++||||++.+   .++|++|++||++|+|+.+|.+||..|.+
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~---~e~~~~in~Ay~~L~d~~~r~~~~~~~~~   77 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---HALMQELNSLWGTFKTEVYNLRMNLGGTG   77 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC---HHHHHHHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC---HHHHHHHHHHHHHHCCHHHHHHHccCCCC
Confidence            46899999999988  99999999999999999999854   57999999999999999999999986653

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.67  E-value=1.2e-17  Score=142.07  Aligned_cols=106  Identities=9%  Similarity=0.061  Sum_probs=80.9

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcce
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIA  208 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~  208 (554)
                      ...++..+|+..+.. ..++++++.||++||++|+.+.|.+.++++++.+..+.+++||++.++.+|++|||++ +||++
T Consensus        13 ~~~v~~~~ld~~~~~-~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~-~Pt~~   90 (119)
T d2es7a1          13 WQPVEASTVDDWIKR-VGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRR-FPATL   90 (119)
T ss_dssp             CEECCCC---------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCS-SSEEE
T ss_pred             CceecccCHHHHHHh-CCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCc-ceEEE
Confidence            345678888877753 4577899999999999999999999999999987679999999999999999999997 99999


Q ss_pred             eccCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        209 LLTDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       209 ~~~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      +|++|+.+....|.++.++++++++..+
T Consensus        91 ~~~~G~~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          91 VFTDGKLRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             EESCC----CEESCCCHHHHHHHHHHHH
T ss_pred             EEEcCeEEEEeeCCCCHHHHHHHHHHHh
Confidence            9999999888878889999999998764

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.66  E-value=2.5e-17  Score=131.68  Aligned_cols=83  Identities=20%  Similarity=0.334  Sum_probs=74.0

Q ss_pred             CcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHH
Q psy16770        148 TPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQK  227 (554)
Q Consensus       148 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~  227 (554)
                      ++.++.|||+||++|+.+.|.|+++++.+.+ .+.+..+|+++++++|++|||++ +||++++++|+   +.| .++.++
T Consensus         3 kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~d~~~~la~~~~V~~-~Pt~~i~~~g~---~~G-~~~~~~   76 (85)
T d1fo5a_           3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVMENPQKAMEYGIMA-VPTIVINGDVE---FIG-APTKEA   76 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESSSSCCTTTSTTTCC-SSEEEETTEEE---CCS-SSSSHH
T ss_pred             ceEEEEEECCCCcChHhhhhhcccccccccc-ccccccccccccccccccCCceE-eeEEEEECCcE---EEC-CCCHHH
Confidence            5778999999999999999999999999876 48999999999999999999998 99999998875   344 458899


Q ss_pred             HHHHHHHhC
Q psy16770        228 MVEFFRLKL  236 (554)
Q Consensus       228 i~~fl~~~~  236 (554)
                      |.+|+++.+
T Consensus        77 l~~~i~~~L   85 (85)
T d1fo5a_          77 LVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999998864

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.6e-17  Score=143.29  Aligned_cols=86  Identities=8%  Similarity=0.245  Sum_probs=76.6

Q ss_pred             ccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccC
Q psy16770        133 THWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTD  212 (554)
Q Consensus       133 t~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~  212 (554)
                      +.++|+..|.. +.+++++|.|||+||++|+++.|.++++++++.+ .+.+++||++++++++++|+|++ +||+++|++
T Consensus         9 s~~~~dq~i~~-~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~VDvd~~~~la~~~~I~~-~PT~~~f~~   85 (137)
T d1qgva_           9 NGWQVDQAILS-EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEVPDFNKMYELYD-PCTVMFFFR   85 (137)
T ss_dssp             SHHHHHHHHHT-CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTCCTTTTSSCSCS-SCEEEEEET
T ss_pred             CHHHHHHHHHh-CCCCEEEEEEECCCCccchhcChHHHHHHHHhhc-cceEEEeeccccchhhhhcCeee-EEEEEEEeC
Confidence            45678888864 3578999999999999999999999999999987 49999999999999999999998 999999999


Q ss_pred             CeEEEEeCC
Q psy16770        213 GRTSFFKEP  221 (554)
Q Consensus       213 g~~~~y~~g  221 (554)
                      |+.+....|
T Consensus        86 g~~i~~~~g   94 (137)
T d1qgva_          86 NKHIMIDLG   94 (137)
T ss_dssp             TEEEEEECC
T ss_pred             CcEEEEEec
Confidence            998765544

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.2e-16  Score=124.31  Aligned_cols=65  Identities=23%  Similarity=0.405  Sum_probs=57.1

Q ss_pred             CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCh------hHHHHHHHHHHHHHHcCChHHHHhhhcc
Q psy16770         19 LDPYETLGVPRTA--SLQEIRKNYKRLVVEWHPDKNNDP------TAQEKFLQLTEAYNILSDAERRKQYDLF   83 (554)
Q Consensus        19 ~d~y~~Lgv~~~a--~~~~ik~ay~~l~~~~hPd~~~~~------~~~~~~~~i~~Ay~~L~~~~~r~~yd~~   83 (554)
                      .|+|++|||++++  +.++||+|||++++++|||+....      .+.+.|..|++||++|+||.+|+.|+..
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~   73 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS   73 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            4899999999965  589999999999999999997532      2567899999999999999999999864

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.59  E-value=3.9e-16  Score=124.58  Aligned_cols=81  Identities=16%  Similarity=0.202  Sum_probs=70.7

Q ss_pred             EEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHH
Q psy16770        150 HLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMV  229 (554)
Q Consensus       150 ~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~  229 (554)
                      .++.||||||+||+++.|.|+++++++.+ ++.++++|+++++++|++|||.+ +||++++..|   .+.|. ++.+.|.
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~-~Pt~~~~~~~---~~~G~-~~~~~l~   77 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVDREKAIEYGLMA-VPAIAINGVV---RFVGA-PSREELF   77 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTCGGGGGGTCSSC-SSEEEETTTE---EEECS-SCCHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccc-cccccccccccchhhHHhcCceE-eCEEEECCcE---EEEcC-CCHHHHH
Confidence            45669999999999999999999999987 49999999999999999999998 9999875543   35544 5889999


Q ss_pred             HHHHHhC
Q psy16770        230 EFFRLKL  236 (554)
Q Consensus       230 ~fl~~~~  236 (554)
                      +++.+.+
T Consensus        78 ~~i~~~l   84 (85)
T d1nhoa_          78 EAINDEM   84 (85)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9999875

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=2.1e-16  Score=128.43  Aligned_cols=65  Identities=20%  Similarity=0.452  Sum_probs=59.0

Q ss_pred             CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh----HHHHHHHHHHHHHHcCChHHHHhh
Q psy16770         16 AVSLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNNDPT----AQEKFLQLTEAYNILSDAERRKQY   80 (554)
Q Consensus        16 ~~~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~~~----~~~~~~~i~~Ay~~L~~~~~r~~y   80 (554)
                      ....+.|++||+++.+|.++||+|||++++.+|||+++++.    +.+.|+.|++||++|+||.+|+.|
T Consensus        30 ~~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          30 WAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CTTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             CCcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            34567899999999999999999999999999999987543    678999999999999999999987

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.57  E-value=1.1e-15  Score=129.25  Aligned_cols=100  Identities=17%  Similarity=0.245  Sum_probs=83.0

Q ss_pred             ccccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc----HHHHHHhCCcCCC
Q psy16770        129 KLSTTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE----QGLARRLGVGSQL  204 (554)
Q Consensus       129 ~~~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~----~~l~~~~~v~~~~  204 (554)
                      +..+|.+.+.+.+   .++++++|+||+|||++|+++.|.|++++++++.. +.+..+|...+    .+++++++|.+ +
T Consensus        11 ~~~~t~~~~~~~i---~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~-v~~v~~~~~~~~~~~~~~~~~~~V~~-~   85 (115)
T d1zmaa1          11 LEVTTVVRAQEAL---DKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH-IYFINSEEPSQLNDLQAFRSRYGIPT-V   85 (115)
T ss_dssp             SEECCHHHHHHHH---HTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC-CEEEETTCGGGHHHHHHHHHHHTCCS-S
T ss_pred             eeeCCHHHHHHHH---hcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh-hhhheeeccccccccccccccccccc-c
Confidence            4455777888877   46789999999999999999999999999998753 55555554433    57899999997 9


Q ss_pred             CcceeccCCeEEEEeCCcccHHHHHHHHH
Q psy16770        205 PQIALLTDGRTSFFKEPSFSVQKMVEFFR  233 (554)
Q Consensus       205 Pti~~~~~g~~~~y~~g~~~~~~i~~fl~  233 (554)
                      ||+++|++|+......|.++.++|.+|+.
T Consensus        86 PTli~~~~gk~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          86 PGFVHITDGQINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             CEEEEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             cEEEEEECCEEEEEEcCCCCHHHHHHHHc
Confidence            99999999998887778889999999973

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.9e-15  Score=119.75  Aligned_cols=65  Identities=26%  Similarity=0.357  Sum_probs=57.1

Q ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHcCChHHHHhhhccCC
Q psy16770         18 SLDPYETLGVPRTASLQEIRKNYKRLVVEWHPDKNND--PTAQEKFLQLTEAYNILSDAERRKQYDLFGT   85 (554)
Q Consensus        18 ~~d~y~~Lgv~~~a~~~~ik~ay~~l~~~~hPd~~~~--~~~~~~~~~i~~Ay~~L~~~~~r~~yd~~~~   85 (554)
                      ..|+|+||||+++||.+|||+|||+|+++||||++++  +.|.++|+.|++||++|+   ++..||..+.
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~~   81 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQAFLDQNAD   81 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHH---HHTTCSSSSS
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH---HHHHhhccch
Confidence            3689999999999999999999999999999999975  357899999999999996   4677776543

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.51  E-value=2e-14  Score=117.06  Aligned_cols=80  Identities=13%  Similarity=0.143  Sum_probs=68.7

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ  226 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~  226 (554)
                      +...++.||+|||+||+.+.|.+++++....  .+.+..||++.++++|++|||++ +||+++  +|+.+ +. |.++.+
T Consensus        15 ~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~--~i~~~~vd~~~~~~l~~~~~I~~-vPt~~~--ng~~~-~~-G~~~~~   87 (96)
T d1hyua4          15 GDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGTFQNEITERNVMG-VPAVFV--NGKEF-GQ-GRMTLT   87 (96)
T ss_dssp             SCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTTCHHHHHHTTCCS-SSEEEE--TTEEE-EE-SCCCHH
T ss_pred             CCeEEEEEECCCCcchHHHHHHHHHHHHhCC--ceEEEEEecccchHHHhhccccc-ccEEEE--CCEEE-Ee-cCCCHH
Confidence            4466888999999999999999999998754  49999999999999999999997 999854  88765 45 556889


Q ss_pred             HHHHHHH
Q psy16770        227 KMVEFFR  233 (554)
Q Consensus       227 ~i~~fl~  233 (554)
                      +|++++.
T Consensus        88 ~l~~~le   94 (96)
T d1hyua4          88 EIVAKVD   94 (96)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9998874

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.3e-15  Score=124.71  Aligned_cols=100  Identities=17%  Similarity=0.321  Sum_probs=79.7

Q ss_pred             cccccccccccccCCCCCCcEEEEEEcc-------cccccccchHHHHHHHHHhCCCCEEEEEEEec-------CcHHHH
Q psy16770        130 LSTTHWNFEKNYIPKSYTTPHLILFYSD-------WCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-------NEQGLA  195 (554)
Q Consensus       130 ~~Lt~~~F~~~v~~~~~~~~~lV~Fya~-------wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-------~~~~l~  195 (554)
                      ...+.++|.+.+.. ..+++++|.|||+       ||++|+++.|.++++++.+.+ ++.|+.||++       .+..++
T Consensus         5 ~v~~~~e~~~~l~~-~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~-~~~~~~vdv~~~~~~~d~~~~l~   82 (119)
T d1woua_           5 SVSGFEEFHRAVEQ-HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKPYWKDPNNDFR   82 (119)
T ss_dssp             EEESHHHHHHHHHT-TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHHHHHCTTCHHH
T ss_pred             EeCCHHHHHHHHHH-cCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC-ceEEEEEECCCCcccchhhhhHH
Confidence            34567788887753 3567999999995       999999999999999999886 4999999984       566799


Q ss_pred             HHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHH
Q psy16770        196 RRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFR  233 (554)
Q Consensus       196 ~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~  233 (554)
                      ++|+|.+ +||+++|++|+.+.-..+ .+++.|..|+.
T Consensus        83 ~~~~V~~-iPT~i~~~~g~~l~~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          83 KNLKVTA-VPTLLKYGTPQKLVESEC-LQANLVEMLFS  118 (119)
T ss_dssp             HHHCCCS-SSEEEETTSSCEEEGGGG-GCHHHHHHHHH
T ss_pred             HhCCeEE-EEEEEEEECCeEEeeeec-CCHHHHHHHhc
Confidence            9999998 999999999886654333 35555555553

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=3.2e-13  Score=114.00  Aligned_cols=97  Identities=19%  Similarity=0.382  Sum_probs=73.9

Q ss_pred             ccccccccCCCCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEecC----cHHHHHHhCCcCCCCcc
Q psy16770        135 WNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVHN----EQGLARRLGVGSQLPQI  207 (554)
Q Consensus       135 ~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~~----~~~l~~~~~v~~~~Pti  207 (554)
                      ++++..+. +..+++++|.|||+||++|+.+.|.+   .++.+.+.  ++.+..+|+..    +..++++|+|.+ +||+
T Consensus        11 ~~~~~~l~-~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~v~~-~Pt~   86 (117)
T d2fwha1          11 DELNQALV-EAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTANDAQDVALLKHLNVLG-LPTI   86 (117)
T ss_dssp             HHHHHHHH-HHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCCHHHHHHHHHTTCCS-SSEE
T ss_pred             HHHHHHHH-HcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc--ceEEEecccccchhHHHHHHhhhehhh-ceEE
Confidence            44555443 23578999999999999999999988   45555554  36677777654    567999999998 9999


Q ss_pred             eec-cCCeEEE--EeCCcccHHHHHHHHHHh
Q psy16770        208 ALL-TDGRTSF--FKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       208 ~~~-~~g~~~~--y~~g~~~~~~i~~fl~~~  235 (554)
                      ++| .+|+.+.  ...|.++++.+.++|+++
T Consensus        87 ~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~~  117 (117)
T d2fwha1          87 LFFDGQGQEHPQARVTGFMDAETFSAHLRDR  117 (117)
T ss_dssp             EEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred             EEEeCCCcEEecccccccCCHHHHHHHHhcC
Confidence            999 6787653  335767999999999763

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=1.7e-12  Score=121.68  Aligned_cols=91  Identities=15%  Similarity=0.151  Sum_probs=77.5

Q ss_pred             cccccc-cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCc
Q psy16770        128 HKLSTT-HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQ  206 (554)
Q Consensus       128 ~~~~Lt-~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pt  206 (554)
                      .+.+|+ .++|.+.|...+.+.+++|+||+|||++|+.+.|.+.++|+.+.  .++|++||++..+ +..+|+|.+ +||
T Consensus       100 ~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~--~vkF~ki~~~~~~-~~~~~~i~~-lPt  175 (217)
T d2trcp_         100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--MVKFCKIRASNTG-AGDRFSSDV-LPT  175 (217)
T ss_dssp             SEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHHHHT-CSTTSCGGG-CSE
T ss_pred             eEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc--cceEEEEccccch-hHHhCCCCC-CCe
Confidence            467775 57899988655566789999999999999999999999999985  4899999998754 668999997 999


Q ss_pred             ceeccCCeEEEEeCCc
Q psy16770        207 IALLTDGRTSFFKEPS  222 (554)
Q Consensus       207 i~~~~~g~~~~y~~g~  222 (554)
                      +++|++|+.+...-|.
T Consensus       176 l~~yk~G~~v~~~vg~  191 (217)
T d2trcp_         176 LLVYKGGELISNFISV  191 (217)
T ss_dssp             EEEEETTEEEEEETTG
T ss_pred             EEEEECCEEEEEEECc
Confidence            9999999987766553

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.13  E-value=7.1e-11  Score=102.88  Aligned_cols=89  Identities=24%  Similarity=0.378  Sum_probs=75.1

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec----------------------------CcHHHHHH
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH----------------------------NEQGLARR  197 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~----------------------------~~~~l~~~  197 (554)
                      .+++++|.|||+||++|++..|.+.++.++++..++.+..|...                            .+..+++.
T Consensus        22 ~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  101 (143)
T d2fy6a1          22 KDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQS  101 (143)
T ss_dssp             TTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHHH
Confidence            57899999999999999999999999999988667777777643                            13478999


Q ss_pred             hCCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        198 LGVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                      ||+.+ +|+++++ ++|+++....|..+.+.+.+++++.
T Consensus       102 ~~v~~-~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~  139 (143)
T d2fy6a1         102 LNISV-YPSWALIGKDGDVQRIVKGSINEAQALALIRDP  139 (143)
T ss_dssp             TTCCS-SSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred             cCCCc-cCEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
Confidence            99997 9999998 8999877766777889999988754

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.05  E-value=1.6e-10  Score=99.45  Aligned_cols=129  Identities=12%  Similarity=0.106  Sum_probs=91.5

Q ss_pred             CCcccccccchhhhhhcCCCCceEEEEEcCCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCc
Q psy16770        348 PYLTLPRISSQSMLDAVCPVKKLCVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSS  427 (554)
Q Consensus       348 ~~~~v~~lt~~~~~~~~c~~~~lcvvl~~~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~  427 (554)
                      ..|++++++.+++....- .....+++|.....+.++..+.++++|++  |++ .+.|+|+|.+...+.++.|-.   ..
T Consensus         4 ~lPLv~e~~~~n~~~~~~-~~~pl~~lf~~~~~~~~~~~~~~~~vA~~--~~~-ki~Fv~vd~~~~~~~l~~~gl---~~   76 (133)
T d2djka1           4 GSPLIGEIGPETYSDYMS-AGIPLAYIFAETAEERKELSDKLKPIAEA--QRG-VINFGTIDAKAFGAHAGNLNL---KT   76 (133)
T ss_dssp             SCCCSEECCHHHHHHHHH-TTSCEEEEECSCSSSHHHHHHHHHHHHHS--STT-TSEEEEECTTTTGGGTTTTTC---CS
T ss_pred             CCCceeccChhhHHHHhc-CCCCEEEEEeCCchHHHHHHHHHHHHHHH--hcC-ceEEEEEeHHHhHHHHHHhcC---Cc
Confidence            468999999776543322 22335566666656778899999999999  975 599999999877766666511   12


Q ss_pred             cccceEEEEEEecCC-CeeEEEecCCCCCcccccchhhHHHHHHHHhhhcCCCCCccccccccchhhh
Q psy16770        428 EISLHIAAMWRMDYK-KIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLVNDPYNNLLYDTALKEISDE  494 (554)
Q Consensus       428 ~~~~~~~~v~~~~~~-~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~~g~~~~~~~~~~lp~~~de  494 (554)
                      +   .+|.+.+.+.+ +.+|....+.        +.|.++|.+|+++++.|+.+|..+++++|+-+|+
T Consensus        77 ~---~~P~~~i~~~~~~~~~~~~~~~--------~i~~~~i~~Fi~d~~~Gkl~p~~kSe~iPe~~dg  133 (133)
T d2djka1          77 D---KFPAFAIQEVAKNQKFPFDQEK--------EITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQEG  133 (133)
T ss_dssp             S---SSSEEEEECTTTCCBCCCCSSS--------CCCHHHHHHHHHHHHHTCCCCSSCCCCCCTTSCC
T ss_pred             c---cCCcEEEEEcCCCceecCCccc--------cCCHHHHHHHHHHHHcCCCCcccccCCCCCCCCC
Confidence            2   34444333433 4566443332        5789999999999999999999999999997763

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=2.2e-10  Score=98.81  Aligned_cols=85  Identities=16%  Similarity=0.299  Sum_probs=65.6

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------------------cHHHHHHhCCcC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------------------EQGLARRLGVGS  202 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------------------~~~l~~~~~v~~  202 (554)
                      .+++++|.|||+||++|++..|.++++++.    ++.+..++.+.                       +..++..|+|.+
T Consensus        19 ~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~----~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~   94 (136)
T d1z5ye1          19 QGKPVLLNVWATWCPTSRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG   94 (136)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCS
T ss_pred             CCCEEEEEEEcCcCCCcCccccchhhhhhh----hhhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCC
Confidence            567999999999999999999999988653    34444444432                       446899999998


Q ss_pred             CCCcceec-cCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        203 QLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       203 ~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                       +|+++++ ++|+++....|..+.+.+.+.+.+.
T Consensus        95 -~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~l  127 (136)
T d1z5ye1          95 -APETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL  127 (136)
T ss_dssp             -BSEEEEECTTSCEEEEEESCCCHHHHHHHTHHH
T ss_pred             -cceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHH
Confidence             9988887 8899887666666777776666544

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.99  E-value=7.2e-10  Score=95.22  Aligned_cols=86  Identities=17%  Similarity=0.393  Sum_probs=69.2

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------------------cHHHHHHhCCcC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------------------EQGLARRLGVGS  202 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------------------~~~l~~~~~v~~  202 (554)
                      .+++++|.||++||++|++..|.+.++++++++  +.+..|+...                       +..+.+.||+.+
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~--~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~  101 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE--VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQ  101 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCS
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcc--cccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCc
Confidence            357999999999999999999999999999875  4555555432                       347889999997


Q ss_pred             CCCcceec-cCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        203 QLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       203 ~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                       +|+++++ ++|+...+. |..+.++|.+.+++.
T Consensus       102 -~P~~~iiD~~G~i~~~~-g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1         102 -QPAYAFVDPHGNVDVVR-GRMSQDELTRRVTAL  133 (134)
T ss_dssp             -SSEEEEECTTCCEEEEE-SCCCHHHHHHHHHHH
T ss_pred             -cCeEEEECCCCeEEEEE-CCCCHHHHHHHHHhh
Confidence             9999998 778865555 556889999888765

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.90  E-value=1.5e-09  Score=93.23  Aligned_cols=86  Identities=17%  Similarity=0.379  Sum_probs=68.4

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------cHHHHHHhCCcCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------EQGLARRLGVGSQ  203 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------~~~l~~~~~v~~~  203 (554)
                      .+++++|.||++||++|+...|.+++++++.+  ++.+..|+.+.                      +..+++.||+.+ 
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~--~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~-   99 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPW-   99 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCS-
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhc--cccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCc-
Confidence            36799999999999999999999999998875  46777787654                      347889999997 


Q ss_pred             CCcceec-cCCeEEEE--eCCcccHHHHHHHHHH
Q psy16770        204 LPQIALL-TDGRTSFF--KEPSFSVQKMVEFFRL  234 (554)
Q Consensus       204 ~Pti~~~-~~g~~~~y--~~g~~~~~~i~~fl~~  234 (554)
                      +|+++++ ++|+....  ..|..+.++|.+-|..
T Consensus       100 ~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_         100 QPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             SSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             CCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence            9999998 67775432  2355688888887754

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.90  E-value=1e-09  Score=95.48  Aligned_cols=86  Identities=12%  Similarity=0.307  Sum_probs=66.5

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-----------------------CcHHHHHHhCCcC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-----------------------NEQGLARRLGVGS  202 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-----------------------~~~~l~~~~~v~~  202 (554)
                      .+++++|.||++||++|+...|.+.++.+..+   +.+..|+..                       .+..+.+.|++.+
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKR---FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYG  106 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT---SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccC---ceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccc
Confidence            46799999999999999999999998866553   333333322                       2457899999998


Q ss_pred             CCCcceec-cCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        203 QLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       203 ~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                       +||++++ .+|+++....|..+.+++.+.+.+.
T Consensus       107 -~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~  139 (144)
T d1knga_         107 -VPETFVVGREGTIVYKLVGPITPDNLRSVLLPQ  139 (144)
T ss_dssp             -SCEEEEECTTSBEEEEEESCCCHHHHHHTHHHH
T ss_pred             -cceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence             9998888 7899877666777888887777654

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.88  E-value=3e-09  Score=91.60  Aligned_cols=88  Identities=17%  Similarity=0.395  Sum_probs=73.2

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------cHHHHHHhCCcCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------EQGLARRLGVGSQ  203 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------~~~l~~~~~v~~~  203 (554)
                      .+++++|.||++||++|++..|.+.++.+.+...++.+..|+++.                      +..+++.|++.+ 
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-  102 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP-  102 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCS-
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhccc-
Confidence            356899999999999999999999999999987679999988754                      236888999997 


Q ss_pred             CCcceec-cCCeEEEEeCCcccHHHHHHHHHH
Q psy16770        204 LPQIALL-TDGRTSFFKEPSFSVQKMVEFFRL  234 (554)
Q Consensus       204 ~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~  234 (554)
                      +|+++++ ++|+.+....|..+.+.+.++++.
T Consensus       103 ~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~  134 (137)
T d1st9a_         103 LPTTFLINPEGKVVKVVTGTMTESMIHDYMNL  134 (137)
T ss_dssp             SCEEEEECTTSEEEEEEESCCCHHHHHHHHHH
T ss_pred             cceEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence            9999888 788887766676677777776643

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.87  E-value=2.9e-09  Score=92.51  Aligned_cols=87  Identities=17%  Similarity=0.329  Sum_probs=69.9

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------------cHHHHHHh
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------------EQGLARRL  198 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------------~~~l~~~~  198 (554)
                      .+++++|.||++||++|++..|.++++.+.+++ ++.+..|+.+.                           +..+++.|
T Consensus        28 ~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  106 (143)
T d2b5xa1          28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAF  106 (143)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHT
T ss_pred             CCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc-cccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHc
Confidence            567999999999999999999999999999986 47777776532                           23588889


Q ss_pred             CCcCCCCcceec-cCCeEEEEeCCcccHHHHHHHHHH
Q psy16770        199 GVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVEFFRL  234 (554)
Q Consensus       199 ~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~  234 (554)
                      ++.+ +|+++++ ++|+.+....|..+.+.+.+-+++
T Consensus       107 ~v~~-~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1         107 ENEY-VPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             CCCC-SSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             CCCc-CCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence            9997 9998888 889887655455577788776654

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.3e-09  Score=88.54  Aligned_cols=87  Identities=15%  Similarity=0.226  Sum_probs=70.7

Q ss_pred             CCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcc
Q psy16770        144 KSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSF  223 (554)
Q Consensus       144 ~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~  223 (554)
                      .+...+.++.|+++||+.|+.+.|.+++++.++   +..+..+|.+.+++|.++|+++  +|++.+  +|+....  +..
T Consensus        12 ~~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~---~~~~v~vd~~~~~~l~~~y~~~--VPvl~i--dg~~~~~--g~~   82 (100)
T d1wjka_          12 SNRALPVLTLFTKAPCPLCDEAKEVLQPYKDRF---ILQEVDITLPENSTWYERYKFD--IPVFHL--NGQFLMM--HRV   82 (100)
T ss_dssp             SCCCCCEEEEEECSSCHHHHHHHHHTSTTSSSS---EEEEEETTSSTTHHHHHHSSSS--CSEEEE--SSSEEEE--SSC
T ss_pred             cCCCCCEEEEEECCCCCChHHHHHHHHHhhhhc---ceEEEecccccCHHHHHHhccc--CCceee--cCceEEe--CCC
Confidence            356678999999999999999999998876655   4788899999999999999984  897654  7776643  445


Q ss_pred             cHHHHHHHHHHhCCCC
Q psy16770        224 SVQKMVEFFRLKLPYK  239 (554)
Q Consensus       224 ~~~~i~~fl~~~~~~~  239 (554)
                      +.+.|.++|++..++.
T Consensus        83 d~~~L~~~L~~l~~~~   98 (100)
T d1wjka_          83 NTSKLEKQLRKLSGPS   98 (100)
T ss_dssp             CHHHHHHHHHSSSCSS
T ss_pred             CHHHHHHHHHHHhcCC
Confidence            8899999998876554

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=8.2e-09  Score=85.29  Aligned_cols=106  Identities=15%  Similarity=0.271  Sum_probs=83.6

Q ss_pred             ccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeC
Q psy16770        242 VPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKE  321 (554)
Q Consensus       242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~  321 (554)
                      .+.+.+++++|+..   ++.++|++|.+..+.....+..++...+++.||++     .+.+++++++++  .|+|++||+
T Consensus         4 ~l~~~~~~e~f~~~---~~v~VVGfF~~~~~~~~~~F~~~A~~~~d~~F~~t-----~~~~v~~~~~v~--~~~Ivl~k~   73 (110)
T d1bjxa_           4 TLPDGAAAESLVES---SEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGIT-----SNSDVFSKYQLD--KDGVVLFKK   73 (110)
T ss_dssp             ECCSHHHHHHHHHH---SSEEEEEECTTTTSHHHHHHHHHHHHCSSSCEEEE-----CCSHHHHHTTCS--SCEEEEEES
T ss_pred             EcCCHHHHHHHhcc---CCeEEEEEEcCCCchHHHHHHHHHHhCcCceEEEE-----CCHHHHHHcCCC--CCeEEEecc
Confidence            34466889999964   45555666666677777777777744467899999     788999999997  599999998


Q ss_pred             CCCCCCceeecCCCChhHHHhHHhcCCCcccccccchh
Q psy16770        322 DKDRPSASITMNSIPVPTLQDITDNNPYLTLPRISSQS  359 (554)
Q Consensus       322 ~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v~~lt~~~  359 (554)
                      ..+..  ..+.++++...|.+||..|+.|++.+++.++
T Consensus        74 ~de~~--~~~~~~~~~~~l~~fi~~~~~PlV~e~~~e~  109 (110)
T d1bjxa_          74 FDEGR--NNFEGEVTKENLLDFIKHNQLPLVIEFTEQT  109 (110)
T ss_dssp             SSSSB--CCCCSCCCHHHHHHHHHHHSSCCCSSCCCTT
T ss_pred             CCccc--cccCCCCCHHHHHHHHHHcCcCcEEecCCCC
Confidence            65543  4567889999999999999999999998654

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.80  E-value=3.6e-09  Score=92.00  Aligned_cols=73  Identities=14%  Similarity=0.255  Sum_probs=60.0

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCC-CEEEEEEEecCc------------------------HHHHHHhCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL-GVGFFTVHVHNE------------------------QGLARRLGV  200 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~-~v~~~~Vd~~~~------------------------~~l~~~~~v  200 (554)
                      .+++++|.|||+||++|++..|.++++.++++.. ++.++.|+.+.+                        ..+++.|+|
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            4679999999999999999999999999998753 588888887652                        247889999


Q ss_pred             cCCCCcceec-cC-CeEEEEe
Q psy16770        201 GSQLPQIALL-TD-GRTSFFK  219 (554)
Q Consensus       201 ~~~~Pti~~~-~~-g~~~~y~  219 (554)
                      ++ +||++++ ++ |+++...
T Consensus       107 ~~-iPt~~lid~~~G~vi~~~  126 (144)
T d1i5ga_         107 KS-IPTLVGVEADSGNIITTQ  126 (144)
T ss_dssp             CS-SSEEEEEETTTCCEEESC
T ss_pred             CC-cCEEEEEeCCCCEEEeeh
Confidence            98 9999988 54 6766543

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.1e-09  Score=92.69  Aligned_cols=89  Identities=16%  Similarity=0.163  Sum_probs=68.1

Q ss_pred             CCCCcEEEEEEcccccccccchHHH---HHHHHHhCCCCEEEEEEEecCc--HHHHHHhCCcCCCCcceec--cCCeEEE
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIF---KKLMDELSPLGVGFFTVHVHNE--QGLARRLGVGSQLPQIALL--TDGRTSF  217 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~l~~~~v~~~~Vd~~~~--~~l~~~~~v~~~~Pti~~~--~~g~~~~  217 (554)
                      ..++++||.|+++||+.|+.+....   .++.+.++. .+.+..||.+..  ..++++|+|.+ +|++.++  ..|+.+.
T Consensus        40 ~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~-~fV~~~v~~~~~e~~~~~~~y~v~~-~Pti~~idp~~ge~v~  117 (147)
T d2dlxa1          40 MQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDSEEGQRYIQFYKLGD-FPYVSILDPRTGQKLV  117 (147)
T ss_dssp             HHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSSHHHHHHHHHHTCCS-SSEEEEECTTTCCCCE
T ss_pred             HcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh-heeEeeecccchhhhhhhhheecCc-eeEEEEEeCCCCeEec
Confidence            4688999999999999999987632   344444544 488889998775  78899999997 9999999  4577776


Q ss_pred             EeCCcccHHHHHHHHHHhC
Q psy16770        218 FKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       218 y~~g~~~~~~i~~fl~~~~  236 (554)
                      ..|+ .+.+.+++.+++.+
T Consensus       118 ~~~~-~~~~~fl~~L~~fl  135 (147)
T d2dlxa1         118 EWHQ-LDVSSFLDQVTGFL  135 (147)
T ss_dssp             EESS-CCHHHHHHHHHHHH
T ss_pred             ccCC-CCHHHHHHHHHHHH
Confidence            6665 47788766665544

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=9.1e-10  Score=94.77  Aligned_cols=71  Identities=21%  Similarity=0.387  Sum_probs=55.0

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHHHH--hCCCCEEEEEEEecCcHHHHHHh-CCcCCCCcceec-cCCeEEE
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDE--LSPLGVGFFTVHVHNEQGLARRL-GVGSQLPQIALL-TDGRTSF  217 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~--l~~~~v~~~~Vd~~~~~~l~~~~-~v~~~~Pti~~~-~~g~~~~  217 (554)
                      .++++++|.|||+||++|++++|.+.+..+.  +.. .+..+.||++.+..++..+ ...+ +||++++ .+|+...
T Consensus        23 ~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~-~fv~v~vd~~~~~~~~~~~~~~~~-~Pt~~~~d~~G~~~~   97 (135)
T d1sena_          23 ASGLPLMVIIHKSWCGACKALKPKFAESTEISELSH-NFVMVNLEDEEEPKDEDFSPDGGY-IPRILFLDPSGKVHP   97 (135)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHT-TSEEEEEEGGGSCSCGGGCTTCSC-SSEEEEECTTSCBCT
T ss_pred             HcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcC-CcEEEeCCCCcCHHHHHHHhhccc-ceeEEEECCCCeEEE
Confidence            4688999999999999999999988655432  223 4888999999888777654 4444 8999998 5777654

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=98.74  E-value=7e-09  Score=90.11  Aligned_cols=73  Identities=16%  Similarity=0.417  Sum_probs=59.7

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhC-CCCEEEEEEEecCc------------------------HHHHHHhCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELS-PLGVGFFTVHVHNE------------------------QGLARRLGV  200 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~-~~~v~~~~Vd~~~~------------------------~~l~~~~~v  200 (554)
                      .+++++|.|||+||++|++..|.++++++++. +.++.+..|+.+..                        ..+++.|+|
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            46799999999999999999999999999985 44688888887652                        247889999


Q ss_pred             cCCCCcceec-cC-CeEEEEe
Q psy16770        201 GSQLPQIALL-TD-GRTSFFK  219 (554)
Q Consensus       201 ~~~~Pti~~~-~~-g~~~~y~  219 (554)
                      .+ +||++++ ++ |+++...
T Consensus       107 ~~-~Pt~~lID~~~G~Ii~~~  126 (144)
T d1o73a_         107 ES-IPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             CS-SSEEEEEETTTCCEEESC
T ss_pred             Cc-CCEEEEEECCCCEEEeec
Confidence            98 9999999 45 6665443

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.60  E-value=6.9e-08  Score=77.91  Aligned_cols=94  Identities=12%  Similarity=0.122  Sum_probs=72.3

Q ss_pred             CCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCC
Q psy16770        244 LSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKED  322 (554)
Q Consensus       244 ~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~  322 (554)
                      .+.++++.|+..  .+..+++++|.+..++....+..++ .+++.+.||++     .+++++++++++  .|+|++|++.
T Consensus         5 ~~~~e~~~F~~~--~d~v~VvGfF~~~~~~~~~~F~~~A~~~rd~~~F~~t-----~d~~va~~~~v~--~~~vvlfr~f   75 (102)
T d1a8ya2           5 EGERELQAFENI--EDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFAT-----FDSKVAKKLTLK--LNEIDFYEAF   75 (102)
T ss_dssp             CSHHHHHHHTTC--CSSCEEEEECSSTTCHHHHHHHHHHHHHTTTSCEEEE-----CCHHHHHHHCCC--TTCEEEECTT
T ss_pred             cCHHHHHHHhcc--CCCEEEEEEECCCCcHHHHHHHHHHHHcCCCceEEEE-----CCHHHHHHcCCC--CCCEEEeeec
Confidence            356788999852  1334555566665666677766666 67899999999     799999999996  6999999997


Q ss_pred             CCCCCceeecC-CCChhHHHhHHhcCC
Q psy16770        323 KDRPSASITMN-SIPVPTLQDITDNNP  348 (554)
Q Consensus       323 ~~~~~~~i~~~-~~~~~~l~~fi~~~~  348 (554)
                      .++.  ..+.+ .++...|.+||+.|+
T Consensus        76 de~~--~~~~~~~~t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          76 MEEP--VTIPDKPNSEEEIVNFVEEHR  100 (102)
T ss_dssp             CSSE--EECSSSSCCHHHHHHHHHHTC
T ss_pred             CCCc--eecCCCCCCHHHHHHHHHHhc
Confidence            7665  44555 488999999999885

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.59  E-value=3.7e-08  Score=85.20  Aligned_cols=73  Identities=18%  Similarity=0.326  Sum_probs=59.5

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCC-CEEEEEEEecCc------------------------HHHHHHhCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL-GVGFFTVHVHNE------------------------QGLARRLGV  200 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~-~v~~~~Vd~~~~------------------------~~l~~~~~v  200 (554)
                      .+++++|.||++||++|+...|.+.++++++... ++.+..|+.+.+                        ..+.+.|+|
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            4679999999999999999999999999999643 588888877642                        368889999


Q ss_pred             cCCCCcceec-cC-CeEEEEe
Q psy16770        201 GSQLPQIALL-TD-GRTSFFK  219 (554)
Q Consensus       201 ~~~~Pti~~~-~~-g~~~~y~  219 (554)
                      ++ +||++++ ++ |+++...
T Consensus       105 ~~-~Pt~~liD~~~G~Vi~~~  124 (144)
T d1o8xa_         105 ES-IPTLIGVDADSGDVVTTR  124 (144)
T ss_dssp             CS-SSEEEEEETTTCCEEESC
T ss_pred             Cc-CCEEEEEeCCCCEEEEEe
Confidence            98 9999999 45 5665443

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=98.48  E-value=1e-07  Score=86.37  Aligned_cols=72  Identities=13%  Similarity=0.165  Sum_probs=59.4

Q ss_pred             CCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEec-----------------------------CcHHHHHH
Q psy16770        147 TTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH-----------------------------NEQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~-----------------------------~~~~l~~~  197 (554)
                      +++++|.|||+||++|++..|.+.++++++++ ++.+..|+..                             .+..++++
T Consensus        32 Gk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~-~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~  110 (187)
T d2cvba1          32 EPLLAVVFMCNHCPYVKGSIGELVALAERYRG-KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  110 (187)
T ss_dssp             SSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT-TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCeEEEEEeCCCCccchhhhhhhhhhhhhccc-cceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence            56899999999999999999999999999987 5888888642                             13479999


Q ss_pred             hCCcCCCCcceec-cCCeEEEEeCC
Q psy16770        198 LGVGSQLPQIALL-TDGRTSFFKEP  221 (554)
Q Consensus       198 ~~v~~~~Pti~~~-~~g~~~~y~~g  221 (554)
                      |++.+ +|+++++ ++|+. .|.|.
T Consensus       111 ~~v~~-~P~~~liD~~G~i-~y~G~  133 (187)
T d2cvba1         111 YRALR-TPEVFLFDERRLL-RYHGR  133 (187)
T ss_dssp             TTCCE-ESEEEEECTTCBE-EEEEC
T ss_pred             ccccc-eeeEEEEcCCCeE-EEEee
Confidence            99997 9999998 55654 56654

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.38  E-value=3.1e-07  Score=82.12  Aligned_cols=90  Identities=13%  Similarity=0.293  Sum_probs=66.1

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCc-----H-------------------HH----HHH
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNE-----Q-------------------GL----ARR  197 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~-----~-------------------~l----~~~  197 (554)
                      .+++++|.||++||++|+...+.+.++.+.+...++.+..|..+.+     .                   .+    ...
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  134 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence            3579999999999999999999999999998876777777765421     1                   12    223


Q ss_pred             hCCcCCCCcceec-cCCeEEEEeCCc--ccHHHHHHHHHHhC
Q psy16770        198 LGVGSQLPQIALL-TDGRTSFFKEPS--FSVQKMVEFFRLKL  236 (554)
Q Consensus       198 ~~v~~~~Pti~~~-~~g~~~~y~~g~--~~~~~i~~fl~~~~  236 (554)
                      +++.+ +|+++++ ++|+++.++.|.  .+.+++++.|+..+
T Consensus       135 ~~v~~-~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         135 GRALG-MPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             TCCSS-SSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             ccCCC-CCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence            35665 8998888 788886554332  24478888887664

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=8e-07  Score=74.70  Aligned_cols=102  Identities=14%  Similarity=0.114  Sum_probs=68.9

Q ss_pred             EEEEEcCCCCcchhHHHHHHHHHhhccCCCCceEEEEEecccchHHHHhhCCCCCCccccceEEEEEEecCCCeeEEEec
Q psy16770        371 CVVLFSEDSPEHDASRHTLRRFAQESRFVHNNIAFMYVFIEKQPEFVNALTSPEDSSEISLHIAAMWRMDYKKIKYGWLL  450 (554)
Q Consensus       371 cvvl~~~~~~~~~~~~~~l~~~a~~~~~~~~~v~F~~vd~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ky~~~~  450 (554)
                      ++++|....++.++.+..++++|++  |+++ +.|+|+|.++..+.++.|    |..+..|.+.+  ....++.||.+..
T Consensus        20 l~~~f~~~~~~~~~~~~~~~~vAk~--fkgk-i~Fv~~D~~~~~~~l~~f----gl~e~~P~~~i--~~~~~~~ky~~~~   90 (125)
T d2b5ea3          20 LGYLFYNDEEELEEYKPLFTELAKK--NRGL-MNFVSIDARKFGRHAGNL----NMKEQFPLFAI--HDMTEDLKYGLPQ   90 (125)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHHH--TTTT-CEEEEEEHHHHTTHHHHT----TCCSCSSEEEE--EETTTTEEEECCC
T ss_pred             EEEEEeCChHHHHHHHHHHHHHHHH--hcCe-eEEEEEchHHhHHHHHHc----CCCccCCcEEE--EecccCcccccch
Confidence            5555666555778899999999999  9865 999999998777777777    32222233322  2244568996542


Q ss_pred             CCCC--Cc-ccccchhhHHHHHHHHhhhcCCCCC
Q psy16770        451 GDAV--DD-WKDYNTTKDRLDAGLRSLVNDPYNN  481 (554)
Q Consensus       451 ~~~~--~~-~~~~~~t~e~l~~fl~~~~~g~~~~  481 (554)
                      ..-+  .. -...++|.+.|.+|+++++.|+.+|
T Consensus        91 ~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKlkP  124 (125)
T d2b5ea3          91 LSEEAFDELSDKIVLESKAIESLVKDFLKGDASP  124 (125)
T ss_dssp             CCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCC
T ss_pred             hhhhhcccccccccCCHHHHHHHHHHHHcCCcCC
Confidence            1000  00 0013579999999999999999874

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=2.5e-06  Score=70.86  Aligned_cols=101  Identities=14%  Similarity=0.185  Sum_probs=71.2

Q ss_pred             ccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHH-----HHHHhhcc-CCceEEEEEEccCCCChhHHhHhCCCCCC
Q psy16770        240 LIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLR-----YLINAFKH-RTTIVFGVIVYDQEDSSSVFQRFKVPGDK  313 (554)
Q Consensus       240 ~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~-----~~~~a~~~-~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~  313 (554)
                      .+..+|.++++++++    .++.+++.|...--++..     +...+..+ .+.+.|+.++++  .+.+++++|+|.+ +
T Consensus        11 ~v~~lt~~~f~~~i~----~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~-~   83 (119)
T d2b5ea4          11 AVVKLATDSFNEYIQ----SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCT--ENQDLCMEHNIPG-F   83 (119)
T ss_dssp             SCEECCTTTHHHHHT----TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETT--TCHHHHHHTTCCS-S
T ss_pred             ccEEcCHHHHHHHHh----cCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeecc--chHHHHHHhcccc-C
Confidence            366789999999985    355666666543222211     11112233 356999999998  6889999999997 9


Q ss_pred             ceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCC
Q psy16770        314 DSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNP  348 (554)
Q Consensus       314 Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~  348 (554)
                      ||+++|+++.. .....+.+..+.+.|.+||+.+.
T Consensus        84 Pti~~f~~g~~-~~~~~y~g~~~~~~l~~fi~k~~  117 (119)
T d2b5ea4          84 PSLKIFKNSDV-NNSIDYEGPRTAEAIVQFMIKQS  117 (119)
T ss_dssp             SEEEEEETTCT-TCEEECCSCCSHHHHHHHHHHHT
T ss_pred             CeEEEEECCEE-eeeEEecCCCCHHHHHHHHHHhh
Confidence            99999986433 22345788899999999998654

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=9.4e-06  Score=67.21  Aligned_cols=103  Identities=13%  Similarity=0.147  Sum_probs=73.4

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEec-------CCchhHHHHHHhhc-cCCceEEEEEEccCCCChhHHhHhCCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQR-------SLPVRLRYLINAFK-HRTTIVFGVIVYDQEDSSSVFQRFKVPGD  312 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~-------~~~~~~~~~~~a~~-~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~  312 (554)
                      |..+|++++++.+++    ++.+++.|..       ...+.+......+. ....+.|+.++++  .+..++++|+|.+ 
T Consensus         9 V~~l~~~~f~~~l~~----~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~-   81 (120)
T d1meka_           9 VLVLRKSNFAEALAA----HKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT--EESDLAQQYGVRG-   81 (120)
T ss_dssp             EEECCTTTHHHHHHH----CSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETT--TCCSSHHHHTCCS-
T ss_pred             eEEcCHHHHHHHHhc----CCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccc--cchhHHHHhCCcc-
Confidence            567789999998853    5666666632       22333444333332 2356899999987  6788999999997 


Q ss_pred             CceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCcc
Q psy16770        313 KDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLT  351 (554)
Q Consensus       313 ~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~  351 (554)
                      +||+++|+++.... ...+.|..+.+.|.+||+.+.-|.
T Consensus        82 ~Pt~~~~~~G~~~~-~~~~~g~~~~~~l~~fi~~~~~p~  119 (120)
T d1meka_          82 YPTIKFFRNGDTAS-PKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             SSEEEEEESSCSSS-CEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             CCeEEEEECCeEee-eEEecCCCCHHHHHHHHHHhhCCC
Confidence            99999998754322 245678889999999999886553

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.07  E-value=1.2e-06  Score=77.48  Aligned_cols=74  Identities=9%  Similarity=0.008  Sum_probs=57.2

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcC--CCCcceec-cCCeEEEEeCC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGS--QLPQIALL-TDGRTSFFKEP  221 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~--~~Pti~~~-~~g~~~~y~~g  221 (554)
                      .++..++.|+++||++|++..|.+.++++...  ++.+..|+.+.+++...++...+  .+|++++. .++......++
T Consensus        53 ~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~  129 (166)
T d1z6na1          53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVE  129 (166)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEEES
T ss_pred             cCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC--CCcEEEEECccCHHHHHHHHHhccccccceeecCccchhcccccc
Confidence            45677888999999999999999999999875  47888899999999999985443  37777776 34444444444

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.04  E-value=9.5e-06  Score=65.51  Aligned_cols=95  Identities=15%  Similarity=0.181  Sum_probs=69.8

Q ss_pred             ccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        242 VPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      ..+|++++++.++    .++++++.|...--++....     ..+..+.+.+.|+.++++  .++.++++|+|.+ .||+
T Consensus         3 i~lt~~~f~~~i~----~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~V~~-~Pt~   75 (105)
T d1nw2a_           3 MTLTDANFQQAIQ----GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVD--ENPETTSQFGIMS-IPTL   75 (105)
T ss_dssp             EEECTTTHHHHTT----SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETT--TCHHHHHHTTCCB-SSEE
T ss_pred             EEECHHHHHHHHh----CCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECC--CCcccHHHCCcce-eeEE
Confidence            4568899999884    46777777755443332222     223366788999999998  6889999999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      ++|+++.. .  ....|..+.+.|.++|+.
T Consensus        76 ~~~~~G~~-~--~~~~G~~~~~~l~~~i~~  102 (105)
T d1nw2a_          76 ILFKGGEP-V--KQLIGYQPKEQLEAQLAD  102 (105)
T ss_dssp             EEEETTEE-E--EEEESCCCHHHHHHHTTT
T ss_pred             EEEECCEE-E--EEEECCCCHHHHHHHHHH
Confidence            99987433 2  245677788899998875

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.02  E-value=1.1e-05  Score=65.39  Aligned_cols=98  Identities=13%  Similarity=0.166  Sum_probs=69.7

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHH----HH-HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLR----YL-INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~----~~-~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      |..+|++++++.+.+   .++++++.|....-++.+    .+ ..+..+.+.+.|+.++++  .+.+++++|+|.+ .||
T Consensus         4 V~~lt~~~f~~~v~~---~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d--~~~~l~~~~~I~~-~Pt   77 (108)
T d1thxa_           4 VITITDAEFESEVLK---AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEID--PNPTTVKKYKVEG-VPA   77 (108)
T ss_dssp             EEECCGGGHHHHTTT---CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEEST--TCHHHHHHTTCCS-SSE
T ss_pred             ceECCHHHHHHHHHh---CCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceeccc--ccHHHHHHhcccC-CCE
Confidence            567799999886643   466777766544333222    11 123366788999999988  6899999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +++|+++.. .  ..+.|..+.+.|.+||+.+
T Consensus        78 ~~~~~~g~~-v--~~~~G~~~~~~l~~~i~~~  106 (108)
T d1thxa_          78 LRLVKGEQI-L--DSTEGVISKDKLLSFLDTH  106 (108)
T ss_dssp             EEEEETTEE-E--EEEESCCCHHHHHHHHHHH
T ss_pred             EEEEECCEE-E--EEEeCCCCHHHHHHHHHHh
Confidence            999986422 1  2456788889999999753

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.00  E-value=1e-05  Score=67.41  Aligned_cols=104  Identities=13%  Similarity=0.184  Sum_probs=75.7

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecC-----CchhHHHHHHhh-ccCCceEEEEEEccC---CCChhHHhHhCCC-
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRS-----LPVRLRYLINAF-KHRTTIVFGVIVYDQ---EDSSSVFQRFKVP-  310 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~-----~~~~~~~~~~a~-~~~~~v~Fg~v~~~~---~~~~~l~~k~~i~-  310 (554)
                      +..++++++++.+.    .++.+++.|...     ..+.+..++..+ .....+.+|.|+++.   ..+.+++++|+|. 
T Consensus         4 ~v~L~~~nFd~~v~----~~~~~lV~Fya~wC~~ck~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~   79 (122)
T d2c0ga2           4 CVDLDELSFEKTVE----RFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD   79 (122)
T ss_dssp             CEECCTTTHHHHHT----TSSEEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCT
T ss_pred             eEEcChHhHHHHHh----cCCcEEEEEECCCCCcccCHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhccc
Confidence            45789999999995    356666655321     124455555444 456789999999864   2468899999995 


Q ss_pred             CCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCC
Q psy16770        311 GDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNP  348 (554)
Q Consensus       311 ~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~  348 (554)
                      ..+||+++|+++...+...-+.++.+.+.|.+||++|.
T Consensus        80 ~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~  117 (122)
T d2c0ga2          80 KNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANT  117 (122)
T ss_dssp             TSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             CCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhc
Confidence            24999999998766655445678889999999999874

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=97.95  E-value=1.6e-05  Score=64.05  Aligned_cols=98  Identities=12%  Similarity=0.172  Sum_probs=70.1

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      |..+|++++++.+..   .++++++.|...--++....     ..+..+.+.+.++.++++  .+++++++|+|.+ .||
T Consensus         1 v~el~d~~f~~~v~~---~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d--~~~~l~~~~~V~~-~Pt   74 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLE---SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTD--EAPGIATQYNIRS-IPT   74 (104)
T ss_dssp             CEECCTTTHHHHTTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT--TCHHHHHHTTCCS-SSE
T ss_pred             CeECchhhHHHHHHc---CCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecc--cchhhhhhcceee-eeE
Confidence            356789999998753   46777776655443332222     223366788899999887  7899999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +++|+++.. .  ....|..+.+.|.+||+.+
T Consensus        75 ~~~~~~G~~-v--~~~~G~~~~~~l~~~i~~~  103 (104)
T d1fb6a_          75 VLFFKNGER-K--ESIIGAVPKSTLTDSIEKY  103 (104)
T ss_dssp             EEEEETTEE-E--EEEEECCCHHHHHHHHHHH
T ss_pred             EEEEEcCeE-E--EEEeCCCCHHHHHHHHHHh
Confidence            999986422 2  2346777888999998753

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=97.89  E-value=2.1e-05  Score=64.35  Aligned_cols=102  Identities=14%  Similarity=0.135  Sum_probs=69.4

Q ss_pred             CccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHH-----HHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCC
Q psy16770        239 KLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLR-----YLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDK  313 (554)
Q Consensus       239 ~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~-----~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~  313 (554)
                      .++.+.|++++++.+..-.+.++++++.|...--++..     +...+..+.+++.|+.++++  .+++++++|+|.+ .
T Consensus         3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d--~~~~l~~~~~v~~-~   79 (112)
T d1ep7a_           3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVD--AVAAVAEAAGITA-M   79 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TTHHHHHHHTCCB-S
T ss_pred             CEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeecc--ccccccccccccC-C
Confidence            33344477888887765434678888877544333221     12233356678999999987  6899999999997 9


Q ss_pred             ceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        314 DSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       314 Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      ||+++|+++..  .. ...| .+.+.|.+||+.+
T Consensus        80 Pt~~~~~~G~~--v~-~~~G-~~~~~l~~~i~k~  109 (112)
T d1ep7a_          80 PTFHVYKDGVK--AD-DLVG-ASQDKLKALVAKH  109 (112)
T ss_dssp             SEEEEEETTEE--EE-EEES-CCHHHHHHHHHHH
T ss_pred             CEEEEEECCEE--EE-EEeC-cCHHHHHHHHHHH
Confidence            99999986432  11 2233 4778899999765

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.88  E-value=1.8e-05  Score=66.02  Aligned_cols=95  Identities=19%  Similarity=0.271  Sum_probs=66.2

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecC-Cc-----hhHHHH----HHhh-cc-CCceEEEEEEccCCCChhHHhHhC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRS-LP-----VRLRYL----INAF-KH-RTTIVFGVIVYDQEDSSSVFQRFK  308 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~-~~-----~~~~~~----~~a~-~~-~~~v~Fg~v~~~~~~~~~l~~k~~  308 (554)
                      |..+|++++++++.+    ++.+++.|... ..     +.+...    ..++ .+ ...+.||.++|+  .+.+++++|+
T Consensus        13 V~~L~~~nf~~~l~~----~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~--~~~~l~~~~~   86 (124)
T d1a8ya1          13 VINVNAKNYKNVFKK----YEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSE--KDAAVAKKLG   86 (124)
T ss_dssp             CEECCTTTHHHHHHH----CSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETT--TSHHHHHTTT
T ss_pred             cEECCHHHHHHHHHh----CCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEee--cccchhhccc
Confidence            667899999999964    44455555322 11     111111    1111 12 345999999998  6889999999


Q ss_pred             CCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        309 VPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       309 i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      |.+ +|||++|+++.  +  ..+.|..+.+.|.+||..
T Consensus        87 I~~-yPTi~~f~~g~--~--~~y~G~r~~~~l~~fi~~  119 (124)
T d1a8ya1          87 LTE-EDSIYVFKEDE--V--IEYDGEFSADTLVEFLLD  119 (124)
T ss_dssp             CCS-TTCEEEEESSS--E--EECCSCCSHHHHHHHHHH
T ss_pred             ccc-CCcEEEeccCc--c--EEeeCCCCHHHHHHHHHH
Confidence            997 99999998742  3  357889999999999974

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=97.85  E-value=2.6e-05  Score=63.04  Aligned_cols=97  Identities=11%  Similarity=0.124  Sum_probs=69.6

Q ss_pred             ccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        242 VPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       242 ~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      ..+|++++++.+..   .++++++.|...--++....     ..+..+.+.+.|+.++++  .+++++++|+|.+ .||+
T Consensus         4 ~~i~~~~f~~~v~~---s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d--~~~~l~~~~~V~~-~Pt~   77 (107)
T d1dbya_           4 GAVNDDTFKNVVLE---SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTD--ESPNVASEYGIRS-IPTI   77 (107)
T ss_dssp             EEECHHHHHHHTTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT--TCHHHHHHHTCCS-SCEE
T ss_pred             eEecHHHHHHHHHh---CCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecc--cchhHHHHhcccc-eEEE
Confidence            45688899887753   56777776654443332222     223356788999999998  6899999999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      ++|+++.. .  ....|..+...|.+||+.+
T Consensus        78 ~~~~~G~~-v--~~~~G~~~~~~l~~~i~~~  105 (107)
T d1dbya_          78 MVFKGGKK-C--ETIIGAVPKATIVQTVEKY  105 (107)
T ss_dssp             EEESSSSE-E--EEEESCCCHHHHHHHHHHH
T ss_pred             EEEECCeE-E--EEEeCCCCHHHHHHHHHHh
Confidence            99986432 2  2456788888999998753

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=4.4e-05  Score=61.74  Aligned_cols=98  Identities=14%  Similarity=0.183  Sum_probs=70.5

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHH-----HHHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLR-----YLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~-----~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..+|++++++.+.   +.++++++.|...--++.+     ....+..+.+++.++.++++  .++.++++|+|.+ .||
T Consensus         4 v~~lt~~~f~~~v~---~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d--~~~~l~~~~~v~~-~PT   77 (108)
T d2trxa_           4 IIHLTDDSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID--QNPGTAPKYGIRG-IPT   77 (108)
T ss_dssp             EEECCTTTHHHHTT---TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETT--TCTTHHHHTTCCS-SSE
T ss_pred             ceECCHHHHHHHHH---hCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeecccc--chhhHHHHhCCCc-EEE
Confidence            56678999987653   3467777777544333322     12223356788999999987  6889999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +++|+++.. .  ....|..+...|.+||+.+
T Consensus        78 ~~~~~~G~~-v--~~~~G~~~~~~l~~~i~~~  106 (108)
T d2trxa_          78 LLLFKNGEV-A--ATKVGALSKGQLKEFLDAN  106 (108)
T ss_dssp             EEEEETTEE-E--EEEESCCCHHHHHHHHHHH
T ss_pred             EEEEECCEE-E--EEEeCCCCHHHHHHHHHHh
Confidence            999986422 1  2456778889999999754

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.75  E-value=0.00011  Score=60.79  Aligned_cols=102  Identities=9%  Similarity=0.128  Sum_probs=70.4

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEE-----ecCCchhHHHHHHhhccCCceEEEEEEc---cCCCChhHHhHhC--CC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLF-----QRSLPVRLRYLINAFKHRTTIVFGVIVY---DQEDSSSVFQRFK--VP  310 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f-----~~~~~~~~~~~~~a~~~~~~v~Fg~v~~---~~~~~~~l~~k~~--i~  310 (554)
                      +..+|++++++++.    .++.++|.|     .....+.+..++..++-......+.+.+   +...+.+++.+++  |.
T Consensus         6 ~v~L~~~nFd~~i~----~~~~~lV~F~~~wc~~~~~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~   81 (122)
T d1g7ea_           6 ALPLDTVTFYKVIP----KSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKE   81 (122)
T ss_dssp             SCSCSHHHHHHHGG----GSSEEEEEEECSSCCTTTTHHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSS
T ss_pred             eEECCHHhHHHHHh----hCCeEEEEEecCCcCcccCHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhccccc
Confidence            56789999999995    466777777     3344466666666664344444444432   2235778998876  55


Q ss_pred             CCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCC
Q psy16770        311 GDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNP  348 (554)
Q Consensus       311 ~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~  348 (554)
                      + +|||++|+++.... ...+.|..+.+.|.+||+.+.
T Consensus        82 ~-yPTi~~f~~G~~~~-~~~y~G~rt~~~l~~fi~~~~  117 (122)
T d1g7ea_          82 S-YPVFYLFRDGDFEN-PVPYSGAVKVGAIQRWLKGQG  117 (122)
T ss_dssp             S-CEEEEEEESSCCCC-CEEEESCCCHHHHHHHHHTTS
T ss_pred             C-CCeEEEEecCcccC-ceecCCCCCHHHHHHHHHhcc
Confidence            5 99999999854332 245788999999999999874

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.73  E-value=2.2e-05  Score=68.29  Aligned_cols=92  Identities=12%  Similarity=0.209  Sum_probs=66.4

Q ss_pred             CCCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------cHHHHHHhCCcC-
Q psy16770        146 YTTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------EQGLARRLGVGS-  202 (554)
Q Consensus       146 ~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------~~~l~~~~~v~~-  202 (554)
                      .++++++.|| +.||++|....|.+.+..+.++..++.+..|..+.                     +..+++.||+.+ 
T Consensus        29 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  108 (160)
T d2cx4a1          29 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHE  108 (160)
T ss_dssp             TSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCEEE
T ss_pred             CCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCcccc
Confidence            4568888888 99999999999999999999987788888886543                     457888888732 


Q ss_pred             --------CCCcceec-cCCeEEEE-e----CCcccHHHHHHHHHHhCC
Q psy16770        203 --------QLPQIALL-TDGRTSFF-K----EPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       203 --------~~Pti~~~-~~g~~~~y-~----~g~~~~~~i~~fl~~~~~  237 (554)
                              ..|++.++ ++|++... .    .+..+.+++++-+++.++
T Consensus       109 ~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  157 (160)
T d2cx4a1         109 DLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  157 (160)
T ss_dssp             EETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHHT
T ss_pred             ccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Confidence                    25776666 77876432 1    133456777777766543

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.67  E-value=8.4e-05  Score=65.30  Aligned_cols=88  Identities=17%  Similarity=0.315  Sum_probs=65.9

Q ss_pred             CCCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------------------------cHHHHHHhC
Q psy16770        146 YTTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------------------------EQGLARRLG  199 (554)
Q Consensus       146 ~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------------------------~~~l~~~~~  199 (554)
                      .++++++.|| +.||+.|....+.+.+..++++..|+.+..|..+.                         +..++++||
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~yg  122 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  122 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcC
Confidence            3567788888 99999999999999999999998888888887653                         457889999


Q ss_pred             C-----cCCCCcceec-cCCeEEEE--eC--CcccHHHHHHHHHH
Q psy16770        200 V-----GSQLPQIALL-TDGRTSFF--KE--PSFSVQKMVEFFRL  234 (554)
Q Consensus       200 v-----~~~~Pti~~~-~~g~~~~y--~~--g~~~~~~i~~fl~~  234 (554)
                      |     .. .|+..++ .+|++...  ..  ..++.+++.+.++.
T Consensus       123 v~~~~~~~-~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~a  166 (169)
T d2bmxa1         123 VLNADGVA-DRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDA  166 (169)
T ss_dssp             CBCTTSSB-CEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             CCccCCcc-ceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            8     43 6776666 67876322  11  12466777777654

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.60  E-value=0.00015  Score=57.91  Aligned_cols=94  Identities=14%  Similarity=0.187  Sum_probs=63.1

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEE
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLI  318 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvv  318 (554)
                      +.|.+++++++++    ++++++.|....-++.....    ..++..+++.|+.++++  .+.+++++|+|.+ .||+++
T Consensus         5 i~s~~~f~~~i~~----~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d--~~~~~~~~~~V~~-~Pt~i~   77 (103)
T d1syra_           5 VTSQAEFDSIISQ----NELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVD--EVSEVTEKENITS-MPTFKV   77 (103)
T ss_dssp             ECSHHHHHHHHHH----CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT--TTHHHHHHTTCCS-SSEEEE
T ss_pred             eCCHHHHHHHHhC----CCcEEEEEeCCcccCcccccccchhhhhcccceEEEeeccc--cCcceeeeeeeec-ceEEEE
Confidence            3467889998853    66777766544433222211    11122356789999987  6889999999997 999999


Q ss_pred             EeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        319 FKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       319 fk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      |+++.. . . ...| .+...|.+||+.+
T Consensus        78 ~k~G~~-v-~-~~~G-~~~~~l~~~i~k~  102 (103)
T d1syra_          78 YKNGSS-V-D-TLLG-ANDSALKQLIEKY  102 (103)
T ss_dssp             EETTEE-E-E-EEES-CCHHHHHHHHHTT
T ss_pred             EECCEE-E-E-EEeC-cCHHHHHHHHHhh
Confidence            987432 1 1 2334 4678899999876

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=7.2e-05  Score=64.87  Aligned_cols=86  Identities=16%  Similarity=0.218  Sum_probs=62.5

Q ss_pred             ccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEe--------------------------------
Q psy16770        141 YIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHV--------------------------------  188 (554)
Q Consensus       141 v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~--------------------------------  188 (554)
                      |.+....+.+++.|+.+.|++|+++.|.++++.+.    ++.+..+.-                                
T Consensus        20 v~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~----~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   95 (156)
T d1eeja1          20 VYKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAG   95 (156)
T ss_dssp             EECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTT
T ss_pred             eecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhcc----CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhc
Confidence            33445677889999999999999999998887542    233333221                                


Q ss_pred             ------------cCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHHh
Q psy16770        189 ------------HNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRLK  235 (554)
Q Consensus       189 ------------~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~~  235 (554)
                                  ..+..+++++||+| +||++ +.||+.+.   |..+.+.|.++|.+.
T Consensus        96 ~~~~~~~~~~~i~~~~~la~~lgv~G-TPt~~-~~nG~~v~---G~~~~e~l~~~i~~~  149 (156)
T d1eeja1          96 KSVAPASCDVDIADHYALGVQLGVSG-TPAVV-LSNGTLVP---GYQPPKEMKEFLDEH  149 (156)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHTCCS-SSEEE-CTTSCEEE---SCCCHHHHHHHHHHH
T ss_pred             cccchhhhcchHHHHHHHHHHcCCcC-CCEEE-EeCCeEec---CCCCHHHHHHHHHHH
Confidence                        12567899999998 99964 46787543   556889999988764

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=97.54  E-value=0.00016  Score=58.89  Aligned_cols=100  Identities=13%  Similarity=0.147  Sum_probs=66.8

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      +.+.|.+++++.+..-.+.++++++.|...--++.+....    ..+-.+.+.|..++++  .+++++++|+|.+ .||+
T Consensus         7 i~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d--~~~~l~~~~~I~~-~Pt~   83 (113)
T d1ti3a_           7 IACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVD--ELKAVAEEWNVEA-MPTF   83 (113)
T ss_dssp             EEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETT--TCHHHHHHHHCSS-TTEE
T ss_pred             EEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCCceEEeeeee--ccccccccCeecc-cceE
Confidence            4455667777766654456788888776554443332221    1222456889999887  6899999999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      ++|+++..  .. ...| .+.+.|.+||+.|
T Consensus        84 ~~~k~G~~--v~-~~~G-~~~~~l~~~i~k~  110 (113)
T d1ti3a_          84 IFLKDGKL--VD-KTVG-ADKDGLPTLVAKH  110 (113)
T ss_dssp             EEEETTEE--EE-EEEC-CCTTHHHHHHHHH
T ss_pred             EEEECCEE--EE-EEcC-CCHHHHHHHHHHH
Confidence            99996432  22 2233 4667899998765

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.54  E-value=0.00011  Score=64.39  Aligned_cols=88  Identities=14%  Similarity=0.298  Sum_probs=63.7

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      ++++++.|| +.||+.|....|.+.+..++++..++.+..|+.+.                            +..+++.
T Consensus        33 GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~  112 (167)
T d1e2ya_          33 GKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARA  112 (167)
T ss_dssp             TSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHHHH
Confidence            457899998 99999999999999999999998888888887753                            3457888


Q ss_pred             hCCc----C-CCCcceec-cCCeEEEEe-C---CcccHHHHHHHHHH
Q psy16770        198 LGVG----S-QLPQIALL-TDGRTSFFK-E---PSFSVQKMVEFFRL  234 (554)
Q Consensus       198 ~~v~----~-~~Pti~~~-~~g~~~~y~-~---g~~~~~~i~~fl~~  234 (554)
                      |++.    + .+|+..++ ++|++.... +   ..++.+++++.++.
T Consensus       113 y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~a  159 (167)
T d1e2ya_         113 YGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEA  159 (167)
T ss_dssp             HTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             cCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            8873    1 15555555 688764331 1   12356777766643

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.49  E-value=0.00038  Score=56.26  Aligned_cols=98  Identities=11%  Similarity=0.177  Sum_probs=66.3

Q ss_pred             cccC-CcccHHHHHhhhhcCCceEEEEEecCCchhHHH-----HHHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        241 IVPL-SATNVDAFLDNWREDNKVHALLFQRSLPVRLRY-----LINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       241 v~~~-t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~-----~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      +..+ +.++++..+..  ..++++++.|...--++.+.     ...+..+.+.+.+..++++  .+++++++|+|.. .|
T Consensus         7 v~~i~~~~~~~~~l~~--~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d--~~~~l~~~~~V~~-~P   81 (111)
T d1xwaa_           7 VYQVKDKADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVD--ECEDIAMEYNISS-MP   81 (111)
T ss_dssp             EEECCSHHHHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETT--TCHHHHHHTTCCS-SS
T ss_pred             EEEECCHHHHHHHHHh--cCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEee--cCcchhhcCCCcc-cc
Confidence            4444 55788888865  25778888675443332222     2223366778999999887  6889999999997 99


Q ss_pred             eEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        315 SLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      |+++|+++..  .. ...|. ....|.+||+.|
T Consensus        82 t~~~~~~G~~--v~-~~~G~-~~~~l~~~I~~~  110 (111)
T d1xwaa_          82 TFVFLKNGVK--VE-EFAGA-NAKRLEDVIKAN  110 (111)
T ss_dssp             EEEEEETTEE--EE-EEESC-CHHHHHHHHHHT
T ss_pred             EEEEEECCEE--EE-EEeCC-CHHHHHHHHHhc
Confidence            9999986432  22 22343 456799999876

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=0.00011  Score=62.31  Aligned_cols=104  Identities=12%  Similarity=0.223  Sum_probs=69.9

Q ss_pred             ccccCCcccHHHHHhhhhcCCceEEEEEecCCc-------hhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCC
Q psy16770        240 LIVPLSATNVDAFLDNWREDNKVHALLFQRSLP-------VRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPG  311 (554)
Q Consensus       240 ~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~-------~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~  311 (554)
                      .|..++.+++++++..   .++.+++.|...--       +.+..++..+ .....+.|+.+++    +..++++|+|.+
T Consensus        13 ~V~~l~~~nf~~~v~~---~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~----~~~~~~~~~v~~   85 (140)
T d2b5ea1          13 SVFQLVGKNHDEIVND---PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDH----TENDVRGVVIEG   85 (140)
T ss_dssp             SEEEECTTTHHHHHHC---TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEG----GGCCCSSCCCSS
T ss_pred             CcEEecCcCHHHHHhc---CCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeec----cchhcccccccc
Confidence            3677899999999853   45666666643322       3333333333 2234677777765    456899999997


Q ss_pred             CCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcCCCccc
Q psy16770        312 DKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNNPYLTL  352 (554)
Q Consensus       312 ~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~~~~~v  352 (554)
                       +||+++|+++... ....+.|..+...|.+||+.|....+
T Consensus        86 -~Ptl~~f~~g~~~-~~~~y~G~~t~~~l~~fi~~~~~~~~  124 (140)
T d2b5ea1          86 -YPTIVLYPGGKKS-ESVVYQGSRSLDSLFDFIKENGHFDV  124 (140)
T ss_dssp             -SSEEEEECCTTSC-CCCBCCSCCCHHHHHHHHHHHCTTCC
T ss_pred             -CCeEEEEECCEEc-ceeEeCCCCCHHHHHHHHHHcCCCCC
Confidence             9999999874332 22457888999999999998754443

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.43  E-value=0.00037  Score=56.74  Aligned_cols=100  Identities=16%  Similarity=0.166  Sum_probs=65.2

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceE
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSL  316 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptl  316 (554)
                      +...|.+++++.+......++++++.|...--++.....    ...+..+.+.|+.++++  .+++++++|+|.+ .||+
T Consensus         9 i~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~--~~~~l~~~~~V~~-~Pt~   85 (114)
T d1xfla_           9 IACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTD--ELKSVASDWAIQA-MPTF   85 (114)
T ss_dssp             EEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETT--TSHHHHHHTTCCS-SSEE
T ss_pred             EEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccccceeEEEee--eceeeccccceee-eEEE
Confidence            444577888776654334677888877544333222211    11223356889999887  7899999999997 9999


Q ss_pred             EEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        317 LIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       317 vvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      ++|+++..  .. ...| .+...|.+||+.+
T Consensus        86 ~~~~~G~~--v~-~~~G-~~~~~l~~~i~k~  112 (114)
T d1xfla_          86 MFLKEGKI--LD-KVVG-AKKDELQSTIAKH  112 (114)
T ss_dssp             EEEETTEE--EE-EEES-CCHHHHHHHHHHH
T ss_pred             EEEECCEE--EE-EEeC-cCHHHHHHHHHHh
Confidence            99986532  22 2233 3677899988764

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00047  Score=55.08  Aligned_cols=95  Identities=15%  Similarity=0.136  Sum_probs=62.7

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH----hhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEE
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN----AFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLI  318 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~----a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvv  318 (554)
                      +.|.+++++.+..  ..++++++.|...--++.+....    ..+..+.+.|+.++++  .+++++++|+|.+ .||+++
T Consensus         5 i~s~~~f~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d--~~~~~~~~~~V~~-~Pt~~~   79 (105)
T d2ifqa1           5 IESKTAFQEALDA--AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD--DCQDVASECEVKC-MPTFQF   79 (105)
T ss_dssp             ECSHHHHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT--TCHHHHHHTTCCB-SSEEEE
T ss_pred             cCCHHHHHHHHHh--CCCCEEEEEEEcCCccchhhhhhhhhhhccccccceeeecccc--cCHhHHHHcCceE-EEEEEE
Confidence            3366788888865  35677788775543333222211    1223456779999887  7899999999997 999999


Q ss_pred             EeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        319 FKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       319 fk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      |+++..  .. ...| .+.+.|.++|+.
T Consensus        80 ~~~G~~--v~-~~~G-~~~~~l~~~i~~  103 (105)
T d2ifqa1          80 FKKGQK--VG-EFSG-ANKEKLEATINE  103 (105)
T ss_dssp             EETTEE--EE-EEES-CCHHHHHHHHHH
T ss_pred             EECCEE--EE-EEeC-CCHHHHHHHHHh
Confidence            986433  22 2334 366788888763

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.34  E-value=0.00012  Score=57.56  Aligned_cols=113  Identities=15%  Similarity=0.185  Sum_probs=75.7

Q ss_pred             ccccchhhhhhcCCC-CceEEEEEcC-CCCcchhHHHHHHHHHhhccCCCC-ceEEEEEecccchHHHHhhCCCCC-Ccc
Q psy16770        353 PRISSQSMLDAVCPV-KKLCVVLFSE-DSPEHDASRHTLRRFAQESRFVHN-NIAFMYVFIEKQPEFVNALTSPED-SSE  428 (554)
Q Consensus       353 ~~lt~~~~~~~~c~~-~~lcvvl~~~-~~~~~~~~~~~l~~~a~~~~~~~~-~v~F~~vd~~~q~~~~~~~~~~~~-~~~  428 (554)
                      .+++.+++++..... .+..+++|+. .+++..+..+.++++|+.  ++++ .+.|+|||-+..+-+....-...+ ...
T Consensus         3 rKl~~e~m~e~W~dd~~g~~IvAFaee~d~dG~eFl~ilk~vA~~--nt~n~~LsivWIDPD~FPlm~~yWe~tF~IDl~   80 (119)
T d1a8ya3           3 RKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQD--NTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLS   80 (119)
T ss_dssp             EECCTTTHHHHHTCCBTTEEEEEECCTTSHHHHHHHHHHHHHHHH--STTCSSCCEEEECGGGCTTTHHHHHHHHTCCTT
T ss_pred             cccchHHHHHHHhcccCCceEEEEecCCCccHHHHHHHHHHHHHH--cCcCCCceEEEECCcccchHHHHHHHhcCCCCC
Confidence            456667777766532 3778888884 456778899999999999  7654 599999999887754443311112 111


Q ss_pred             ccceEEEEEEecCCCeeEEEecCCCCCcccccchhhHHHHHHHHhhh
Q psy16770        429 ISLHIAAMWRMDYKKIKYGWLLGDAVDDWKDYNTTKDRLDAGLRSLV  475 (554)
Q Consensus       429 ~~~~~~~v~~~~~~~~ky~~~~~~~~~~~~~~~~t~e~l~~fl~~~~  475 (554)
                       .|++-+|.+.+++...|.+-+..       ..-|.+.|+++|++++
T Consensus        81 -~PqIGVVdv~dadSvW~~~~~~~-------d~~t~~~Le~WiedVl  119 (119)
T d1a8ya3          81 -APQIGVVNVTDADSVWMEMDDEE-------DLPSAEELEDWLEDVL  119 (119)
T ss_dssp             -SCEEEEEETTTCCEEECC--------------CCHHHHHHHHHHHC
T ss_pred             -CCceeeEecccCcceeeeccccc-------ccccHHHHHHHHHHhC
Confidence             37888888877777877654321       1238899999999875

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=97.31  E-value=0.00042  Score=56.21  Aligned_cols=98  Identities=9%  Similarity=0.063  Sum_probs=63.9

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCce
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDS  315 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Pt  315 (554)
                      +..++.+++.+++..  ..++++++.|....-++....     ..+.++ .++.|..++++. .+++++++|+|.+ .||
T Consensus         8 v~~~~~d~f~~~l~~--~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~-~~v~~~~vd~~~-~~~~l~~~~~V~~-~Pt   82 (112)
T d1f9ma_           8 VTEVNKDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY-LDVIFLKLDCNQ-ENKTLAKELGIRV-VPT   82 (112)
T ss_dssp             EEEECTTTHHHHHHT--CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEECSS-TTHHHHHHHCCSS-SSE
T ss_pred             eEEeCHHHHHHHHHH--cCCCEEEEEEEcCCCcchHHHHHHHhhhcccc-ccceeecccccc-cchhhHhheeecc-CCE
Confidence            566788899999865  346777777754443332211     122233 467899998863 4689999999997 999


Q ss_pred             EEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        316 LLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       316 lvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +++|+++..  .. ...|. ....+.++|+.+
T Consensus        83 ~~~~k~G~~--v~-~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          83 FKILKENSV--VG-EVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             EEEEETTEE--EE-EEESS-CHHHHHHHHHHH
T ss_pred             EEEEECCEE--EE-EEeCC-CHHHHHHHHHHc
Confidence            999986432  11 23343 556777877653

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.29  E-value=0.00027  Score=63.37  Aligned_cols=89  Identities=13%  Similarity=0.273  Sum_probs=66.7

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      ++++++.|| ++||+.|....+.+.+..++++..|+.+..|.++.                            +..+|+.
T Consensus        33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~  112 (194)
T d1uula_          33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS  112 (194)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHHH
Confidence            467888999 99999999999999999999988889999998763                            4579999


Q ss_pred             hCCcC-----CCCcceec-cCCeEEEE--eC--CcccHHHHHHHHHHh
Q psy16770        198 LGVGS-----QLPQIALL-TDGRTSFF--KE--PSFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~~-----~~Pti~~~-~~g~~~~y--~~--g~~~~~~i~~fl~~~  235 (554)
                      ||+-.     .+|+..++ ++|.+...  +.  -.+..+++...++..
T Consensus       113 ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~al  160 (194)
T d1uula_         113 YGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF  160 (194)
T ss_dssp             HTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             cCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHh
Confidence            99832     24545555 77876332  21  224778888877653

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00071  Score=54.31  Aligned_cols=95  Identities=8%  Similarity=0.015  Sum_probs=64.0

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEE
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLL  317 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlv  317 (554)
                      +.|++++++.+..  ..++++++.|...--++.....     .+.++ .++.|..++++  .+++++++|+|.+ .||++
T Consensus         6 i~s~~~f~~~l~~--~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~-~~~~f~~vd~d--~~~~l~~~~~v~~-~Pt~~   79 (107)
T d1gh2a_           6 VGSDPDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVH--QCQGTAATNNISA-TPTFQ   79 (107)
T ss_dssp             ECSGGGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETT--TSHHHHHHTTCCS-SSEEE
T ss_pred             cCCHHHHHHHHHh--CCCCEEEEEEECCCCCCccccchhhhcccccc-ccccccccccc--cchhhhhhcCcee-ceEEE
Confidence            4477899998865  3467777766544433322221     22233 46889999887  7899999999997 99999


Q ss_pred             EEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        318 IFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       318 vfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      +|+++..  .. ...| .+...|.++|+.+
T Consensus        80 ~~~~G~~--v~-~~~G-~~~~~l~~~i~k~  105 (107)
T d1gh2a_          80 FFRNKVR--ID-QYQG-ADAVGLEEKIKQH  105 (107)
T ss_dssp             EEETTEE--EE-EEES-SCHHHHHHHHHHH
T ss_pred             EEECCEE--EE-EEeC-CCHHHHHHHHHHh
Confidence            9987442  22 2334 4677888888753

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.22  E-value=0.00069  Score=54.96  Aligned_cols=78  Identities=13%  Similarity=0.190  Sum_probs=54.9

Q ss_pred             CCccccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCC
Q psy16770        238 YKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGD  312 (554)
Q Consensus       238 ~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~  312 (554)
                      |.++.+.|.++++++++    .++++++.|...--++.+..     ..+.. .+.+.|+.++++  .+++++++|+|.+ 
T Consensus         8 p~vi~i~s~~~~~~~~~----~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~-~~~v~~~~vd~d--~~~~l~~~~~V~~-   79 (113)
T d1r26a_           8 PSVVDVYSVEQFRNIMS----EDILTVAWFTAVWCGPCKTIERPMEKIAYE-FPTVKFAKVDAD--NNSEIVSKCRVLQ-   79 (113)
T ss_dssp             SCCEEECCHHHHHHHHH----SSSCEEEEEECTTCHHHHHTHHHHHHHHHH-CTTSEEEEEETT--TCHHHHHHTTCCS-
T ss_pred             CceEEeCCHHHHHHHHc----CCCeEEEEEECCCCccchhhceeccccccc-cccccccccccc--cchhhHHHccccC-
Confidence            34455667888999884    46777777754433222211     12223 368999999987  6899999999997 


Q ss_pred             CceEEEEeCCC
Q psy16770        313 KDSLLIFKEDK  323 (554)
Q Consensus       313 ~Ptlvvfk~~~  323 (554)
                      .||+++|+++.
T Consensus        80 ~Pt~~~~~~G~   90 (113)
T d1r26a_          80 LPTFIIARSGK   90 (113)
T ss_dssp             SSEEEEEETTE
T ss_pred             CCEEEEEECCE
Confidence            99999998743

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.18  E-value=0.00025  Score=60.83  Aligned_cols=85  Identities=16%  Similarity=0.249  Sum_probs=61.5

Q ss_pred             ccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEE---------------------------------
Q psy16770        141 YIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVH---------------------------------  187 (554)
Q Consensus       141 v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd---------------------------------  187 (554)
                      |.+..+.+.+++.|+-+.||+|+++.|+.+++.+.    +..+..+.                                 
T Consensus        20 i~g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~   95 (150)
T d1t3ba1          20 VYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDL----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKG   95 (150)
T ss_dssp             EECCTTCSEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTT
T ss_pred             EECCCCCCEEEEEEECCCCHHHHHHhHHHHHHhcc----CceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhh
Confidence            44445677789999999999999999998887653    23333221                                 


Q ss_pred             -----------ecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHHH
Q psy16770        188 -----------VHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFRL  234 (554)
Q Consensus       188 -----------~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~~  234 (554)
                                 ...+..+++++||+| .||+++ .||+.+   .|..+.+.|.+.|.+
T Consensus        96 ~~~~~~~~~~~i~~~~~la~~lGv~G-TPt~~~-~nG~~i---~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1          96 NLPKEVKTPNIVKKHYELGIQFGVRG-TPSIVT-STGELI---GGYLKPADLLRALEE  148 (150)
T ss_dssp             CCCSSCCCSSHHHHHHHHHHHHTCCS-SCEEEC-TTSCCC---CSCCCHHHHHHHHHH
T ss_pred             ccccchhhhhHHHHHHHHHHhcCcCC-CCEEEE-cCCcEe---cCCCCHHHHHHHHHh
Confidence                       111457899999998 998775 678643   466688999988875

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00032  Score=62.23  Aligned_cols=45  Identities=13%  Similarity=0.059  Sum_probs=40.7

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN  190 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~  190 (554)
                      .++++||.++|+|||.|.+-.|.++++.+++++.|+.+..+-|..
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nq   67 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQ   67 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCC
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeeccc
Confidence            467899999999999999988999999999998789999998875

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=97.14  E-value=0.0004  Score=60.65  Aligned_cols=69  Identities=23%  Similarity=0.384  Sum_probs=52.5

Q ss_pred             CCcEEEEEEcc-cccccccchHHHHHHHHHhCCCCEEEEEEEecC-------------------------cHHHHHHhCC
Q psy16770        147 TTPHLILFYSD-WCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------------------------EQGLARRLGV  200 (554)
Q Consensus       147 ~~~~lV~Fya~-wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------------------------~~~l~~~~~v  200 (554)
                      ++++++.||.. ||+.|....+.+.+..++++..|+.+..|.++.                         +..++++||+
T Consensus        31 GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv  110 (166)
T d1we0a1          31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDV  110 (166)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred             CCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHhCC
Confidence            45788889955 999999999999999999987788888887764                         3467888887


Q ss_pred             cC-----CCCcceec-cCCeE
Q psy16770        201 GS-----QLPQIALL-TDGRT  215 (554)
Q Consensus       201 ~~-----~~Pti~~~-~~g~~  215 (554)
                      ..     ..|+..++ ++|.+
T Consensus       111 ~~~~~~~~~r~tfvID~~G~I  131 (166)
T d1we0a1         111 LNEETGLADRGTFIIDPDGVI  131 (166)
T ss_dssp             EETTTTEECEEEEEECTTSBE
T ss_pred             CccccCcccceEEEECCCCcE
Confidence            52     13434444 67766

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.11  E-value=0.00055  Score=59.93  Aligned_cols=89  Identities=15%  Similarity=0.292  Sum_probs=63.7

Q ss_pred             CCCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHH
Q psy16770        146 YTTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLAR  196 (554)
Q Consensus       146 ~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~  196 (554)
                      .++++++.|| +.||+.|....+.+++...++++.++.+..|.++.                            +..+++
T Consensus        32 gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~  111 (170)
T d1zofa1          32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (170)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHHH
Confidence            3457888899 99999999999999999999987788888887654                            347888


Q ss_pred             HhCCcC----CCCcceec-cCCeEEE--EeC--CcccHHHHHHHHHH
Q psy16770        197 RLGVGS----QLPQIALL-TDGRTSF--FKE--PSFSVQKMVEFFRL  234 (554)
Q Consensus       197 ~~~v~~----~~Pti~~~-~~g~~~~--y~~--g~~~~~~i~~fl~~  234 (554)
                      .||+..    ..|+..++ ++|++..  ...  ..++.+++++.++.
T Consensus       112 ~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~a  158 (170)
T d1zofa1         112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDA  158 (170)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred             HcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            888841    14555555 7887632  221  12466777766653

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.11  E-value=0.00062  Score=58.66  Aligned_cols=70  Identities=16%  Similarity=0.260  Sum_probs=50.2

Q ss_pred             CcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------cHHHHHHhCCcCCCC
Q psy16770        148 TPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------EQGLARRLGVGSQLP  205 (554)
Q Consensus       148 ~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------~~~l~~~~~v~~~~P  205 (554)
                      +++++.|| +.||+.|....+.+.+...+++.. +.+..|..+.                     +..++++||+.. .|
T Consensus        34 ~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~-~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~ygv~~-~~  111 (156)
T d2a4va1          34 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEY-AAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKK-TP  111 (156)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT-CEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBS-SS
T ss_pred             cEEEEEecccccCcchhhhhHHHHHHHHHHhhc-cceeeeccchhhhHHhhhcccCccceeccchHHHHHHHcCCCc-cc
Confidence            34555556 889999999999999999999864 4455666543                     457888998875 66


Q ss_pred             c------ceeccCCeEEEEe
Q psy16770        206 Q------IALLTDGRTSFFK  219 (554)
Q Consensus       206 t------i~~~~~g~~~~y~  219 (554)
                      .      ..+..+|+....+
T Consensus       112 ~~~~~r~~~i~~dg~i~~~~  131 (156)
T d2a4va1         112 LSGSIRSHFIFVDGKLKFKR  131 (156)
T ss_dssp             SSCBCCEEEEEETTEEEEEE
T ss_pred             cCCeeEEEEEEECCeEEEEE
Confidence            3      3444788875544

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.05  E-value=0.00011  Score=59.97  Aligned_cols=97  Identities=12%  Similarity=0.136  Sum_probs=62.1

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCC-------chhHHHHHHhhc---cCCceEEEEEEccCCCChhHHhHhCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSL-------PVRLRYLINAFK---HRTTIVFGVIVYDQEDSSSVFQRFKVP  310 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~-------~~~~~~~~~a~~---~~~~v~Fg~v~~~~~~~~~l~~k~~i~  310 (554)
                      |..+|.+++++++.+   .+++.++.|...-       .+.+..++....   ....+.++..+     ....+.+++|.
T Consensus         4 V~~lt~~nF~~~v~~---~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~   75 (116)
T d2djja1           4 VTVVVAKNYNEIVLD---DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVD-----ATANDVPDEIQ   75 (116)
T ss_dssp             SEECCTTTTTTSSSC---TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEE-----TTTSCCSSCCS
T ss_pred             cEEcccCCHHHHHhc---CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecc-----cchhhhccccc
Confidence            678899999988743   4666666663332       233333333332   12235566664     34456788999


Q ss_pred             CCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        311 GDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       311 ~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      + +|||++|+++.... ...+.|..+.+.|.+||+.|
T Consensus        76 ~-~Pti~~f~~g~~~~-~~~~~g~~~~~~l~~fi~~~  110 (116)
T d2djja1          76 G-FPTIKLYPAGAKGQ-PVTYSGSRTVEDLIKFIAEN  110 (116)
T ss_dssp             S-SSEEEEECSSCTTS-CCCCCCCSCHHHHHHHHHHT
T ss_pred             C-CCEEEEEECCccCc-eEEecCCCCHHHHHHHHHHc
Confidence            7 99999998754321 23467888999999999976

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.04  E-value=0.00028  Score=58.55  Aligned_cols=102  Identities=16%  Similarity=0.136  Sum_probs=75.0

Q ss_pred             ccccccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceec
Q psy16770        131 STTHWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALL  210 (554)
Q Consensus       131 ~Lt~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~  210 (554)
                      +|+.+||.+.+   ..+.|.++.||.+.-. -..+.+.+.++|+.+++ .+.|+.+|.++.....+.+|+....|.+.+.
T Consensus         4 ei~~~~~~~y~---~~~~Pl~~~f~~~~~~-~~~~~~~~~~vAk~fkg-ki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~   78 (125)
T d2b5ea3           4 EIDGSVFAQYV---ESGLPLGYLFYNDEEE-LEEYKPLFTELAKKNRG-LMNFVSIDARKFGRHAGNLNMKEQFPLFAIH   78 (125)
T ss_dssp             BCCHHHHHHHH---HTTSCEEEEEESSHHH-HHHHHHHHHHHHHHTTT-TCEEEEEEHHHHTTHHHHTTCCSCSSEEEEE
T ss_pred             ccCHHHHHHHH---hcCCCEEEEEeCChHH-HHHHHHHHHHHHHHhcC-eeEEEEEchHHhHHHHHHcCCCccCCcEEEE
Confidence            46778888877   4677888889886543 45688999999999998 4999999999999999999997668998887


Q ss_pred             cC--CeEEEEe------------CCcccHHHHHHHHHHhCC
Q psy16770        211 TD--GRTSFFK------------EPSFSVQKMVEFFRLKLP  237 (554)
Q Consensus       211 ~~--g~~~~y~------------~g~~~~~~i~~fl~~~~~  237 (554)
                      ..  +......            .+..+.++|.+|+.+.+.
T Consensus        79 ~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~  119 (125)
T d2b5ea3          79 DMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLK  119 (125)
T ss_dssp             ETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHH
T ss_pred             ecccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHc
Confidence            42  3222211            133466777777766543

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.02  E-value=0.00055  Score=63.16  Aligned_cols=89  Identities=16%  Similarity=0.297  Sum_probs=67.2

Q ss_pred             CCCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC---------------------------cHHHHHH
Q psy16770        146 YTTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN---------------------------EQGLARR  197 (554)
Q Consensus       146 ~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~---------------------------~~~l~~~  197 (554)
                      .++.+++.|| ++||+.|....+.+.+.+++++..|+.+..|.++.                           +..+++.
T Consensus        28 kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~  107 (237)
T d2zcta1          28 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  107 (237)
T ss_dssp             TTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHH
T ss_pred             CCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHHH
Confidence            3567777888 99999999999999999999988789988887653                           4578999


Q ss_pred             hCC-------cCCCCcceec-cCCeEE--EEeC--CcccHHHHHHHHHHh
Q psy16770        198 LGV-------GSQLPQIALL-TDGRTS--FFKE--PSFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v-------~~~~Pti~~~-~~g~~~--~y~~--g~~~~~~i~~fl~~~  235 (554)
                      ||+       .. .|++.++ .+|.+.  .++.  ..|+.++|+..+...
T Consensus       108 yGv~~~~~~~~~-~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aL  156 (237)
T d2zcta1         108 LGLLHAESATHT-VRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  156 (237)
T ss_dssp             TTCC----CCTT-CCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             cCCccccccccc-eeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence            998       33 6777676 778762  2221  125889998888643

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00062  Score=56.93  Aligned_cols=96  Identities=19%  Similarity=0.212  Sum_probs=65.6

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEec-------CCchhHHHHHHhhccCC-ceEEEEEEccCCCChhHHhHhCCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQR-------SLPVRLRYLINAFKHRT-TIVFGVIVYDQEDSSSVFQRFKVPGD  312 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~-------~~~~~~~~~~~a~~~~~-~v~Fg~v~~~~~~~~~l~~k~~i~~~  312 (554)
                      ...++..++++++..  ..++++++.|..       ...+.+...  +.++.+ .+.++.++++  .+.+++++|+|.+ 
T Consensus        19 ~~~~~~~~~d~~~~~--~~~~vVll~f~a~wCp~C~~~~pvl~el--a~~~~~~~~~~a~Vd~d--~~~~la~~~~V~~-   91 (132)
T d2hfda1          19 WTPVSESRLDDWLTQ--APDGVVLLSSDPKRTPEVSDNPVMIGEL--LREFPDYTWQVAIADLE--QSEAIGDRFGVFR-   91 (132)
T ss_dssp             CEEECHHHHHHHHHH--CSEEEEEECSCCSCCSSSSCCTHHHHHH--HTTCTTSCEEEEEECHH--HHHHHHHHHTCCS-
T ss_pred             CcccccccHHHHHHh--CCCcEEEEEeeCCCChhHHHHHHHHHHH--HHHccCCcceeEEEEec--CCHHHHHhhccCc-
Confidence            456688899999875  234455554521       122233333  334444 4788999987  6899999999997 


Q ss_pred             CceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        313 KDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       313 ~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      .||+++|+++.. .  ....|..+...|.++|+.
T Consensus        92 ~PT~~~~~~G~~-v--~~~~G~~~~~~l~~~i~~  122 (132)
T d2hfda1          92 FPATLVFTGGNY-R--GVLNGIHPWAELINLMRG  122 (132)
T ss_dssp             CCEEEEEETTEE-E--EEECCCSCHHHHHHHHHH
T ss_pred             ceeEEEEEcCcE-e--eeecCCCCHHHHHHHHHH
Confidence            999999987432 1  356788898889888874

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.00  E-value=0.00092  Score=58.05  Aligned_cols=85  Identities=13%  Similarity=0.107  Sum_probs=59.8

Q ss_pred             CCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCC-CEEEEEEEecC-------------------------------
Q psy16770        143 PKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPL-GVGFFTVHVHN-------------------------------  190 (554)
Q Consensus       143 ~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~-~v~~~~Vd~~~-------------------------------  190 (554)
                      ++...++.+++|....|+||+++.|...++.+.+... .+.+..+....                               
T Consensus        20 G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   99 (172)
T d1z6ma1          20 GESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMF   99 (172)
T ss_dssp             SCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHH
Confidence            3444556799999999999999999999887776421 24444443211                               


Q ss_pred             -----------------------------------cHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHHH
Q psy16770        191 -----------------------------------EQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFFR  233 (554)
Q Consensus       191 -----------------------------------~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl~  233 (554)
                                                         ....++++||+| +||+++  ||+.   ..|..+.+++.++|.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~g-TPt~~I--ng~~---~~g~~~~~~~~~~id  171 (172)
T d1z6ma1         100 ATQDEWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQF-VPTIII--GEYI---FDESVTEEELRGYIE  171 (172)
T ss_dssp             HTHHHHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCS-SCEEEE--TTEE---ECTTCCHHHHHHHHT
T ss_pred             HhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCc-CCEEEE--CCEE---ecCCCCHHHHHHHHc
Confidence                                               123556799998 999766  8864   245568899988875

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.99  E-value=0.00037  Score=57.25  Aligned_cols=97  Identities=18%  Similarity=0.153  Sum_probs=55.8

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCch-----hHHHHHHhhccCC-ceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPV-----RLRYLINAFKHRT-TIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~-----~~~~~~~a~~~~~-~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      ...++..+++++++.  ..++++++.|...--+     ....-..+.++.+ ++.++.++++  .+++++++|+|+. .|
T Consensus        13 ~~~v~~~~ld~~~~~--~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d--~~~~l~~~~~V~~-~P   87 (119)
T d2es7a1          13 WQPVEASTVDDWIKR--VGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE--QSEAIGDRFNVRR-FP   87 (119)
T ss_dssp             CEECCCC----------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHH--HHHHHHHTTTCCS-SS
T ss_pred             CceecccCHHHHHHh--CCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECC--CCHHHHHhcCcCc-ce
Confidence            456788899999875  2455555545322111     1111112224444 6889999887  6889999999997 99


Q ss_pred             eEEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770        315 SLLIFKEDKDRPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       315 tlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~  345 (554)
                      |+++|+++...   ....|..+.+.+.++|+
T Consensus        88 t~~~~~~G~~v---~~~~G~~~~~~l~~~i~  115 (119)
T d2es7a1          88 ATLVFTDGKLR---GALSGIHPWAELLTLMR  115 (119)
T ss_dssp             EEEEESCC-------CEESCCCHHHHHHHHH
T ss_pred             EEEEEEcCeEE---EEeeCCCCHHHHHHHHH
Confidence            99999864332   24567778888888776

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.0013  Score=55.23  Aligned_cols=74  Identities=14%  Similarity=0.149  Sum_probs=55.4

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecCCchhHHHH-----HHhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEE
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYL-----INAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF  319 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~-----~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvf  319 (554)
                      |..++++.+.+  +.++++++.|....-++....     ..+-++.+.+.|+.+|++  .+++++++|+|.+ .||+++|
T Consensus         9 s~~~~dq~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd--~~~~la~~~~I~~-~PT~~~f   83 (137)
T d1qgva_           9 NGWQVDQAILS--EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDIT--EVPDFNKMYELYD-PCTVMFF   83 (137)
T ss_dssp             SHHHHHHHHHT--CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETT--TCCTTTTSSCSCS-SCEEEEE
T ss_pred             CHHHHHHHHHh--CCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeecc--ccchhhhhcCeee-EEEEEEE
Confidence            56789988865  467788887865544432222     222356788999999998  7889999999997 9999999


Q ss_pred             eCCC
Q psy16770        320 KEDK  323 (554)
Q Consensus       320 k~~~  323 (554)
                      +++.
T Consensus        84 ~~g~   87 (137)
T d1qgva_          84 FRNK   87 (137)
T ss_dssp             ETTE
T ss_pred             eCCc
Confidence            8754

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=96.89  E-value=0.0015  Score=57.06  Aligned_cols=88  Identities=20%  Similarity=0.331  Sum_probs=64.6

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      +++++|.|| +.||+.|....+.+++.+++++..|+.+..|.++.                            +..++++
T Consensus        27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~  106 (170)
T d2h01a1          27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARS  106 (170)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHHHH
Confidence            467888899 89999999999999999999988789999998773                            3578889


Q ss_pred             hCCcC----CCCcceec-cCCeEEEEe-C---CcccHHHHHHHHHH
Q psy16770        198 LGVGS----QLPQIALL-TDGRTSFFK-E---PSFSVQKMVEFFRL  234 (554)
Q Consensus       198 ~~v~~----~~Pti~~~-~~g~~~~y~-~---g~~~~~~i~~fl~~  234 (554)
                      ||+-.    ..++..++ .+|.+.... +   ..++.+++++.|..
T Consensus       107 ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~  152 (170)
T d2h01a1         107 YDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDA  152 (170)
T ss_dssp             TTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHH
T ss_pred             hCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence            98832    13444444 777664332 2   22466777777754

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.80  E-value=0.0021  Score=47.81  Aligned_cols=73  Identities=21%  Similarity=0.394  Sum_probs=55.7

Q ss_pred             EEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHH
Q psy16770        152 ILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEF  231 (554)
Q Consensus       152 V~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~f  231 (554)
                      |..+.+.|..|.++...-+++++++. ....+.+|  +.-.++. +|||-+ .|.+++  ||+.. +.|...+.++|.+|
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~g-i~a~v~kv--~d~~ei~-~ygVms-tPalvI--dg~vv-~~G~vPs~~ei~~~   75 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELG-IDAEFEKI--KEMDQIL-EAGLTA-LPGLAV--DGELK-IMGRVASKEEIKKI   75 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTT-CCEEEEEE--CSHHHHH-HHTCSS-SSCEEE--TTEEE-ECSSCCCHHHHHHH
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcC-CceEEEEe--CCHHHHH-HcCCcC-CCEEEE--CCEEE-EEecCCCHHHHHHH
Confidence            45668999999999999999999874 34555555  5666665 699997 999887  67654 44555688999887


Q ss_pred             H
Q psy16770        232 F  232 (554)
Q Consensus       232 l  232 (554)
                      +
T Consensus        76 L   76 (77)
T d1iloa_          76 L   76 (77)
T ss_dssp             C
T ss_pred             h
Confidence            5

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.74  E-value=0.002  Score=51.22  Aligned_cols=58  Identities=10%  Similarity=0.067  Sum_probs=46.1

Q ss_pred             ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        283 KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       283 ~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      ...+.+.+..++++  ..++++++|+|.+ .||+++|+++...   ....|..+.+.+.++|..
T Consensus        47 ~~~~~v~~~~id~~--~~~~l~~~~~V~~-vPTi~i~~~G~~~---~~~~G~~~~~~~~~~i~~  104 (107)
T d1a8la2          47 AGKGKILGDMVEAI--EYPEWADQYNVMA-VPKIVIQVNGEDR---VEFEGAYPEKMFLEKLLS  104 (107)
T ss_dssp             TTCCCEEEEEEEGG--GCHHHHHHTTCCS-SCEEEEEETTEEE---EEEESCCCHHHHHHHHHH
T ss_pred             ccCCcEEEEEeccc--ccccccccccccc-ceEEEEEeCCeEE---EEEECCCCHHHHHHHHHH
Confidence            35677899999887  6889999999997 9999999875432   345688888888888864

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.72  E-value=0.0018  Score=55.18  Aligned_cols=86  Identities=10%  Similarity=0.097  Sum_probs=56.5

Q ss_pred             CcEEEEE-EcccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------------------cHHHHHHhCCcC-
Q psy16770        148 TPHLILF-YSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------------------EQGLARRLGVGS-  202 (554)
Q Consensus       148 ~~~lV~F-ya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------------------~~~l~~~~~v~~-  202 (554)
                      +++++.| ++.||+.|....+.+.+..+++...++.+..|..+.                       +..+++.||+.. 
T Consensus        30 ~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~~~  109 (153)
T d1xvwa1          30 KNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNE  109 (153)
T ss_dssp             CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEET
T ss_pred             CcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhccceeEEecccccchhHHHhhhhhh
Confidence            4445544 489999999999999999999988789998887765                       235677777642 


Q ss_pred             ----CCCcceec-cCCeEEEEe----CCcccHHHHHHHHH
Q psy16770        203 ----QLPQIALL-TDGRTSFFK----EPSFSVQKMVEFFR  233 (554)
Q Consensus       203 ----~~Pti~~~-~~g~~~~y~----~g~~~~~~i~~fl~  233 (554)
                          ..|+..++ ++|++....    +..+...++.+-+.
T Consensus       110 ~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~  149 (153)
T d1xvwa1         110 QAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALA  149 (153)
T ss_dssp             TTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHH
T ss_pred             ccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHH
Confidence                13344445 677664222    12234555655444

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=96.72  E-value=0.002  Score=56.10  Aligned_cols=40  Identities=28%  Similarity=0.472  Sum_probs=32.1

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEE
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTV  186 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~V  186 (554)
                      +.++.+|+|....|+||+++.|.+.++.+.+... +.+..+
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~-~~~~~~   56 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG-AKFQKN   56 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-CEEEEE
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccc-cceeEE
Confidence            4678899999999999999999999988877542 444444

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=96.71  E-value=0.0045  Score=51.36  Aligned_cols=104  Identities=14%  Similarity=0.123  Sum_probs=72.0

Q ss_pred             CCccccCCcccHHHHHhhhhcCCceEEEEEecCCch--hHH--HHHHhhccCCceEEEEEEccCCCChhHHhHhCCC-CC
Q psy16770        238 YKLIVPLSATNVDAFLDNWREDNKVHALLFQRSLPV--RLR--YLINAFKHRTTIVFGVIVYDQEDSSSVFQRFKVP-GD  312 (554)
Q Consensus       238 ~~~v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~--~~~--~~~~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~-~~  312 (554)
                      -+++..+|.+++..+.+    ..++.+++|.+....  .+.  +...|-++++++.|.+++..  ......+.|++. .+
T Consensus         5 lPLv~e~~~~n~~~~~~----~~~pl~~lf~~~~~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~--~~~~~l~~~gl~~~~   78 (133)
T d2djka1           5 SPLIGEIGPETYSDYMS----AGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAK--AFGAHAGNLNLKTDK   78 (133)
T ss_dssp             CCCSEECCHHHHHHHHH----TTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEEECTT--TTGGGTTTTTCCSSS
T ss_pred             CCceeccChhhHHHHhc----CCCCEEEEEeCCchHHHHHHHHHHHHHHHhcCceEEEEEeHH--HhHHHHHHhcCCccc
Confidence            35578889999999884    467888888765432  222  22233388999999999865  466778889986 45


Q ss_pred             CceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        313 KDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       313 ~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      .|.++++...............++.+.|.+|++..
T Consensus        79 ~P~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~  113 (133)
T d2djka1          79 FPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDF  113 (133)
T ss_dssp             SSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCceecCCccccCCHHHHHHHHHHH
Confidence            89999887544433222335677888999999753

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.0025  Score=55.50  Aligned_cols=81  Identities=16%  Similarity=0.131  Sum_probs=57.0

Q ss_pred             CCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------------
Q psy16770        145 SYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------------  190 (554)
Q Consensus       145 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------------  190 (554)
                      ...+..++.|+.+.|++|+++.+..+++.+..   ++.+..++..-                                  
T Consensus        34 ~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~---~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~  110 (169)
T d1v58a1          34 KDAPVIVYVFADPFCPYCKQFWQQARPWVDSG---KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKL  110 (169)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHHHHHHHHHTT---SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCC
T ss_pred             CCCCEEEEEEECCCCcchHHHHHHHHHHHhcc---ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccc
Confidence            44556789999999999999999988876543   36665554321                                  


Q ss_pred             ----------------cHHHHHHhCCcCCCCcceec-cCCeEEEEeCCcccHHHHHH
Q psy16770        191 ----------------EQGLARRLGVGSQLPQIALL-TDGRTSFFKEPSFSVQKMVE  230 (554)
Q Consensus       191 ----------------~~~l~~~~~v~~~~Pti~~~-~~g~~~~y~~g~~~~~~i~~  230 (554)
                                      +..+++++||+| .||+++. .+|...... |..+.+.|..
T Consensus       111 ~~~~~~~~~~~~~i~~n~~~a~~~gi~g-TPt~i~~~~~g~~~~~~-G~~~~~~l~~  165 (169)
T d1v58a1         111 NVPANVSTEQMKVLSDNEKLMDDLGANV-TPAIYYMSKENTLQQAV-GLPDQKTLNI  165 (169)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHTCCS-SCEEEEEETTTEEEEEE-SSCCHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCCCC-CCEEEEECCCCCEEEec-CCCCHHHHHH
Confidence                            336788999998 9998876 466655554 5556555543

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.0024  Score=55.27  Aligned_cols=41  Identities=12%  Similarity=0.163  Sum_probs=31.9

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEec
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVH  189 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~  189 (554)
                      ++++++.|| +.||+.|....|.+++.+.+..  ++.+..|..+
T Consensus        44 GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d   85 (164)
T d1qxha_          44 GKRKVLNIFPSIDTGVCAASVRKFNQLATEID--NTVVLCISAD   85 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--TEEEEEEESS
T ss_pred             CCeEEEEEecchhcccchHHHHHHHHHHHhhc--cceeeeEEcC
Confidence            457777777 7899999999999999988765  4666666544

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.60  E-value=0.0025  Score=54.75  Aligned_cols=87  Identities=17%  Similarity=0.304  Sum_probs=62.8

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      ++++++.|| +.||+.|....+.+.+...++...|+.+..|..+.                            +..+++.
T Consensus        26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~  105 (158)
T d1zyea1          26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD  105 (158)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHHHH
Confidence            457899999 99999999999999999999887788888777643                            3468889


Q ss_pred             hCCcCCCC------cceec-cCCeEEEE-eC---CcccHHHHHHHHHH
Q psy16770        198 LGVGSQLP------QIALL-TDGRTSFF-KE---PSFSVQKMVEFFRL  234 (554)
Q Consensus       198 ~~v~~~~P------ti~~~-~~g~~~~y-~~---g~~~~~~i~~fl~~  234 (554)
                      ||+.. .+      +..++ ++|++... .+   ..++.+++++.++.
T Consensus       106 ygv~~-~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lka  152 (158)
T d1zyea1         106 YGVLL-EGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKA  152 (158)
T ss_dssp             TTCEE-TTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHhcc-ccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            99874 33      33344 78876422 11   12466778777763

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0054  Score=49.89  Aligned_cols=96  Identities=9%  Similarity=0.031  Sum_probs=59.3

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCC-------chhHH-----HHHHhhccCCceEEEEEEccC-----CCChhHHh
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSL-------PVRLR-----YLINAFKHRTTIVFGVIVYDQ-----EDSSSVFQ  305 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~-------~~~~~-----~~~~a~~~~~~v~Fg~v~~~~-----~~~~~l~~  305 (554)
                      +.+.+++.+.+...  .++++++.|....       -++.+     ....+..+.+.+.|..++++.     +.+..+++
T Consensus         6 v~~~~e~~~~l~~~--~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~   83 (119)
T d1woua_           6 VSGFEEFHRAVEQH--NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK   83 (119)
T ss_dssp             EESHHHHHHHHHTT--TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred             eCCHHHHHHHHHHc--CCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHH
Confidence            44567777777653  5678888885531       11211     112233567789999998742     24567999


Q ss_pred             HhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770        306 RFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       306 k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~  345 (554)
                      +|+|.+ .||+++|+++..    .........+.+..|++
T Consensus        84 ~~~V~~-iPT~i~~~~g~~----l~~~~~~~~~ll~~~~~  118 (119)
T d1woua_          84 NLKVTA-VPTLLKYGTPQK----LVESECLQANLVEMLFS  118 (119)
T ss_dssp             HHCCCS-SSEEEETTSSCE----EEGGGGGCHHHHHHHHH
T ss_pred             hCCeEE-EEEEEEEECCeE----EeeeecCCHHHHHHHhc
Confidence            999997 999999986432    12222234455555554

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.41  E-value=0.0017  Score=52.85  Aligned_cols=81  Identities=20%  Similarity=0.393  Sum_probs=57.6

Q ss_pred             cEEEEEEc-ccccccccchHHHHHHHHHhCCCCEEEEEEEecC--cHHHHHHhCCcCCCCcceeccCCeE--EEEeCCcc
Q psy16770        149 PHLILFYS-DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN--EQGLARRLGVGSQLPQIALLTDGRT--SFFKEPSF  223 (554)
Q Consensus       149 ~~lV~Fya-~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~--~~~l~~~~~v~~~~Pti~~~~~g~~--~~y~~g~~  223 (554)
                      +.++.|-+ +.|+.|..+....++++..-.  ++.+...|.+.  +++++++|+|.. .|++.+..+|+.  +.|+|-+ 
T Consensus        24 V~l~~~~~~~~~~~~~e~~~ll~ela~lSd--ki~~~~~~~~~~e~~~~~~~~~ver-~Ps~~i~~~g~~~gIrF~GiP-   99 (119)
T d1a8la1          24 VKLIVFVRKDHCQYCDQLKQLVQELSELTD--KLSYEIVDFDTPEGKELAKRYRIDR-APATTITQDGKDFGVRYFGLP-   99 (119)
T ss_dssp             EEEEEEECSSSCTTHHHHHHHHHHHHTTCT--TEEEEEEETTSHHHHHHHHHTTCCS-SSEEEEEETTBCCSEEEESCC-
T ss_pred             EEEEEEecCCCchhHHHHHHHHHHHHhhCC--CeEEEEeccCcchhhhHHHhhcccc-CceEEEecCCcccceEEEecc-
Confidence            44444443 569999999988888876543  47777666554  678999999996 999999988765  7777643 


Q ss_pred             cHHHHHHHHH
Q psy16770        224 SVQKMVEFFR  233 (554)
Q Consensus       224 ~~~~i~~fl~  233 (554)
                      .=.++..|+.
T Consensus       100 ~GhEf~Slil  109 (119)
T d1a8la1         100 AGHEFAAFLE  109 (119)
T ss_dssp             CTTHHHHHHH
T ss_pred             CchhHHHHHH
Confidence            3255555554

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=96.37  E-value=0.0045  Score=45.89  Aligned_cols=72  Identities=22%  Similarity=0.433  Sum_probs=51.3

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVE  230 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~  230 (554)
                      +..|..++|+.|......+.   + .  .++.+..||.+.++++..+||..  +|.+.+ .++.. ... + .+.+.|.+
T Consensus         2 ltLyt~~~C~LCe~A~~~l~---~-~--~~~~~~~vdI~~d~~l~~~y~~~--IPVl~~-~~~~~-l~w-~-fd~~~l~~   69 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALA---Q-A--RAGAFFSVFIDDDAALESAYGLR--VPVLRD-PMGRE-LDW-P-FDAPRLRA   69 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHH---H-T--TCCCEEEEECTTCHHHHHHHTTT--CSEEEC-TTCCE-EES-C-CCHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH---h-c--cCCcEEEEEccCCHHHHHHhCCe--eeEEEE-CCeeE-EcC-c-cCHHHHHH
Confidence            56789999999976543332   2 1  24789999999999999999974  897653 33333 332 3 47799999


Q ss_pred             HHHH
Q psy16770        231 FFRL  234 (554)
Q Consensus       231 fl~~  234 (554)
                      |+..
T Consensus        70 ~L~~   73 (75)
T d1ttza_          70 WLDA   73 (75)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            8863

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.36  E-value=0.0058  Score=49.26  Aligned_cols=95  Identities=12%  Similarity=0.199  Sum_probs=60.3

Q ss_pred             cccCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH-----hhccCCceEEEEEEccCCCC----hhHHhHhCCCC
Q psy16770        241 IVPLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN-----AFKHRTTIVFGVIVYDQEDS----SSVFQRFKVPG  311 (554)
Q Consensus       241 v~~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~-----a~~~~~~v~Fg~v~~~~~~~----~~l~~k~~i~~  311 (554)
                      +..+|.+++.+.++    .+++++++|....-++.+.+..     +..+...+.|  ++.+...+    .+++++|+|.+
T Consensus        11 ~~~~t~~~~~~~i~----~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~--v~~~~~~~~~~~~~~~~~~~V~~   84 (115)
T d1zmaa1          11 LEVTTVVRAQEALD----KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYF--INSEEPSQLNDLQAFRSRYGIPT   84 (115)
T ss_dssp             SEECCHHHHHHHHH----TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEE--EETTCGGGHHHHHHHHHHHTCCS
T ss_pred             eeeCCHHHHHHHHh----cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhh--heeeccccccccccccccccccc
Confidence            44556777888774    4667777776544443332221     2234444444  44432122    36889999997


Q ss_pred             CCceEEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770        312 DKDSLLIFKEDKDRPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       312 ~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~  345 (554)
                       .||+++|+++..   .....|.++.+.|.+||.
T Consensus        85 -~PTli~~~~gk~---~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          85 -VPGFVHITDGQI---NVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             -SCEEEEEETTEE---EEECCTTCCHHHHHHHHT
T ss_pred             -ccEEEEEECCEE---EEEEcCCCCHHHHHHHHc
Confidence             999999987543   245678899999999985

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.32  E-value=0.0042  Score=54.86  Aligned_cols=89  Identities=15%  Similarity=0.196  Sum_probs=63.3

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------------------------cHHHHHHhCC
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------------------------EQGLARRLGV  200 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------------------------~~~l~~~~~v  200 (554)
                      ++.+++.|| ++||+.|....+.+++..++++..++.+..|.++.                         +..++++||+
T Consensus        30 Gk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv  109 (186)
T d1n8ja_          30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  109 (186)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTC
T ss_pred             CCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhCC
Confidence            457888899 89999999999999999999987788888887655                         3467888887


Q ss_pred             cC-----CCCcceec-cCCeEEE--Ee--CCcccHHHHHHHHHHh
Q psy16770        201 GS-----QLPQIALL-TDGRTSF--FK--EPSFSVQKMVEFFRLK  235 (554)
Q Consensus       201 ~~-----~~Pti~~~-~~g~~~~--y~--~g~~~~~~i~~fl~~~  235 (554)
                      ..     ..|+..++ ++|.+..  .+  .-.++.+++.+.++..
T Consensus       110 ~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaL  154 (186)
T d1n8ja_         110 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHH
Confidence            42     13444444 6777521  11  1235778887777643

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=96.20  E-value=0.0039  Score=46.03  Aligned_cols=66  Identities=17%  Similarity=0.364  Sum_probs=46.6

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHH---HHHhCCcCCCCcceeccCCeEEEEeCCcccHHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGL---ARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQK  227 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l---~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~  227 (554)
                      ++.|..+||++|.+....+++       .|+.+..+|.+.+++.   .++.|.++ +|++.+  +|+   +.||. +.+.
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~-------~~i~~~~~~i~~~~~~~~~~~~~g~~t-vP~i~i--~g~---~igGf-~~d~   68 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDR-------AGLAYNTVDISLDDEARDYVMALGYVQ-APVVEV--DGE---HWSGF-RPER   68 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TTCCCEEEETTTCHHHHHHHHHTTCBC-CCEEEE--TTE---EEESC-CHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHH-------cCCceEEEEccCCHHHHHHHHHhCCCC-cCEEEE--CCE---EEeCC-CHhH
Confidence            466889999999887755543       3688888898886544   46678887 998654  675   44565 4466


Q ss_pred             HHH
Q psy16770        228 MVE  230 (554)
Q Consensus       228 i~~  230 (554)
                      |.+
T Consensus        69 l~~   71 (74)
T d1r7ha_          69 IKQ   71 (74)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0024  Score=48.72  Aligned_cols=74  Identities=19%  Similarity=0.341  Sum_probs=52.8

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH----HHHHHh--CCcCCCCcceeccCCeEEEEeCCccc
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ----GLARRL--GVGSQLPQIALLTDGRTSFFKEPSFS  224 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~----~l~~~~--~v~~~~Pti~~~~~g~~~~y~~g~~~  224 (554)
                      +|.|..+||++|.+....+++.....++  +.+..+|.+.++    .+.++.  +++. +|.|.+  +|+   +.||.  
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~t-vPqIfi--~g~---~IGG~--   72 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD--FQYQYVDIRAEGITKEDLQQKAGKPVET-VPQIFV--DQQ---HIGGY--   72 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS--CEEEEECHHHHTCCSHHHHHHTCCCSCC-SCEEEE--TTE---EEESS--
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC--ceEEEEecCCCHHHHHHHHHHhcCCCCC-CCEEEE--CCE---EEECH--
Confidence            5668999999999999999988877764  677788766543    444443  3455 888644  775   55776  


Q ss_pred             HHHHHHHHHHh
Q psy16770        225 VQKMVEFFRLK  235 (554)
Q Consensus       225 ~~~i~~fl~~~  235 (554)
                       +++.+++++.
T Consensus        73 -~el~~~~~~~   82 (85)
T d1egoa_          73 -TDFAAWVKEN   82 (85)
T ss_dssp             -HHHHHHHHHH
T ss_pred             -HHHHHHHHhc
Confidence             6787777654

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0091  Score=50.47  Aligned_cols=90  Identities=14%  Similarity=0.122  Sum_probs=61.0

Q ss_pred             CCCcEEEEEEccccc-ccccchHHHHHHHHHhCC----CCEEEEEEEecC----------------------------cH
Q psy16770        146 YTTPHLILFYSDWCF-ACLQVEPIFKKLMDELSP----LGVGFFTVHVHN----------------------------EQ  192 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~-~C~~l~p~~~~~a~~l~~----~~v~~~~Vd~~~----------------------------~~  192 (554)
                      .++++||.|+.+||+ .|....+.+.++.+.+..    ..+.+..+..+.                            ..
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            367999999999996 698888888888776542    124444444321                            11


Q ss_pred             HHHHHhCCcCCC---------------Ccceec-cCCeEEEEeCCcccHHHHHHHHHHhC
Q psy16770        193 GLARRLGVGSQL---------------PQIALL-TDGRTSFFKEPSFSVQKMVEFFRLKL  236 (554)
Q Consensus       193 ~l~~~~~v~~~~---------------Pti~~~-~~g~~~~y~~g~~~~~~i~~fl~~~~  236 (554)
                      .+...+++.. .               +++.++ ++|+++.++++..+.++|.+-|++.+
T Consensus        99 ~~~~~~~~~~-~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~l  157 (160)
T d1wp0a1          99 QVARAYRVYY-SPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHM  157 (160)
T ss_dssp             HHHHHTTCCE-EECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred             HHhhhhheee-ecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            3566666543 3               344555 88999888877778888888777664

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.98  E-value=0.0067  Score=45.83  Aligned_cols=55  Identities=5%  Similarity=0.057  Sum_probs=43.0

Q ss_pred             ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        283 KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       283 ~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      .+.+.+.+..++++  .+++++++|+|.+ .||+++++++.       ..|..+.+.|.+||+.+
T Consensus        30 ~~~~~~~~~~~~~d--~~~~la~~~~V~~-~Pt~~i~~~g~-------~~G~~~~~~l~~~i~~~   84 (85)
T d1fo5a_          30 EMPDAVEVEYINVM--ENPQKAMEYGIMA-VPTIVINGDVE-------FIGAPTKEALVEAIKKR   84 (85)
T ss_dssp             HCSSSEEEEEEESS--SSCCTTTSTTTCC-SSEEEETTEEE-------CCSSSSSHHHHHHHHHH
T ss_pred             cccccccccccccc--ccccccccCCceE-eeEEEEECCcE-------EECCCCHHHHHHHHHhc
Confidence            45677888888877  6788999999997 99999876521       34667888899988754

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.018  Score=46.09  Aligned_cols=101  Identities=11%  Similarity=0.078  Sum_probs=63.2

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHH-------hhccCCceEEEEEEccC--CCChhHHhHhCCCCCC
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLIN-------AFKHRTTIVFGVIVYDQ--EDSSSVFQRFKVPGDK  313 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~-------a~~~~~~v~Fg~v~~~~--~~~~~l~~k~~i~~~~  313 (554)
                      +.|.++++..++.  ..++++++.|...--++.+....       ..+....+.+..++...  ..+.+++++|+|.+ .
T Consensus         7 i~~~~~~~~~l~~--~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~-~   83 (117)
T d2fwha1           7 IKTVDELNQALVE--AKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLG-L   83 (117)
T ss_dssp             CCSHHHHHHHHHH--HTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCS-S
T ss_pred             ecCHHHHHHHHHH--cCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhh-c
Confidence            3455677777765  35788888886544444333321       11233455566665543  23456899999997 9


Q ss_pred             ceEEEEeCCCCCCCceeecCCCChhHHHhHHhc
Q psy16770        314 DSLLIFKEDKDRPSASITMNSIPVPTLQDITDN  346 (554)
Q Consensus       314 Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~  346 (554)
                      ||+++|.++++........|.++...+.++|++
T Consensus        84 Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          84 PTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             SEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             eEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence            999999765543322234577888888888864

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0033  Score=50.45  Aligned_cols=101  Identities=9%  Similarity=0.088  Sum_probs=71.6

Q ss_pred             cccccccccCCCCCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCC
Q psy16770        134 HWNFEKNYIPKSYTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG  213 (554)
Q Consensus       134 ~~~F~~~v~~~~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g  213 (554)
                      ....++.+   ..+.+++|=|+.+--   ......|.++|+.+++  +.|+.+.   +.++++++|++  -|+|++|++.
T Consensus         8 ~~~~e~f~---~~~~v~VVGfF~~~~---~~~~~~F~~~A~~~~d--~~F~~t~---~~~v~~~~~v~--~~~Ivl~k~~   74 (110)
T d1bjxa_           8 GAAAESLV---ESSEVAVIGFFKDVE---SDSAKQFLQAAEAIDD--IPFGITS---NSDVFSKYQLD--KDGVVLFKKF   74 (110)
T ss_dssp             HHHHHHHH---HHSSEEEEEECTTTT---SHHHHHHHHHHHHCSS--SCEEEEC---CSHHHHHTTCS--SCEEEEEESS
T ss_pred             HHHHHHHh---ccCCeEEEEEEcCCC---chHHHHHHHHHHhCcC--ceEEEEC---CHHHHHHcCCC--CCeEEEeccC
Confidence            34555555   356678887776532   2356689999999964  5666543   55799999997  4999999764


Q ss_pred             -eEEEEeCCcccHHHHHHHHHHhCCCCccccCCccc
Q psy16770        214 -RTSFFKEPSFSVQKMVEFFRLKLPYKLIVPLSATN  248 (554)
Q Consensus       214 -~~~~y~~g~~~~~~i~~fl~~~~~~~~v~~~t~~~  248 (554)
                       ....+++|..+.++|.+|+....-|. |..+|.++
T Consensus        75 de~~~~~~~~~~~~~l~~fi~~~~~Pl-V~e~~~e~  109 (110)
T d1bjxa_          75 DEGRNNFEGEVTKENLLDFIKHNQLPL-VIEFTEQT  109 (110)
T ss_dssp             SSSBCCCCSCCCHHHHHHHHHHHSSCC-CSSCCCTT
T ss_pred             CccccccCCCCCHHHHHHHHHHcCcCc-EEecCCCC
Confidence             33445566679999999999988776 66666554

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.72  E-value=0.015  Score=49.80  Aligned_cols=86  Identities=12%  Similarity=0.122  Sum_probs=54.8

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC-----------------------cHHHHHHhCCcC
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-----------------------EQGLARRLGVGS  202 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-----------------------~~~l~~~~~v~~  202 (554)
                      +++++|.|| +.||+.|....+.+.+...+++  ++.+..|..+.                       +..+++.||+..
T Consensus        42 gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~  119 (163)
T d1psqa_          42 GKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLI  119 (163)
T ss_dssp             TSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--TEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBC
T ss_pred             CcEEEEEeccccccccchhhHHHHHHHHHhhc--ccceEEEEeccHHHHHHHHHHcCCcceeeeccccchhHHHhheeec
Confidence            457778787 7899999999998888777775  46777776543                       235778888753


Q ss_pred             -CCC----cceec-cCCeEEEE--e---CCcccHHHHHHHHHH
Q psy16770        203 -QLP----QIALL-TDGRTSFF--K---EPSFSVQKMVEFFRL  234 (554)
Q Consensus       203 -~~P----ti~~~-~~g~~~~y--~---~g~~~~~~i~~fl~~  234 (554)
                       .+|    +.+++ ++|.+..-  .   +...+.+++++.++.
T Consensus       120 ~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~  162 (163)
T d1psqa_         120 NEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             TTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             ccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhc
Confidence             123    22333 67876422  1   122345677776643

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.0037  Score=46.48  Aligned_cols=64  Identities=16%  Similarity=0.283  Sum_probs=45.3

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHH---HHhCCcCCCCcceeccCCeEEEEeCCcccHHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA---RRLGVGSQLPQIALLTDGRTSFFKEPSFSVQK  227 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~---~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~  227 (554)
                      ++.|..+||++|.++...+.+       .|+.+..+|.+.+++..   +..|.++ +|++.+  +|+.   .||. .++.
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~-------~~i~y~~~~i~~~~~~~~~~~~~g~~t-vP~i~i--~~~~---i~Gf-~~d~   68 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMEN-------RGFDFEMINVDRVPEAAEALRAQGFRQ-LPVVIA--GDLS---WSGF-RPDM   68 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TTCCCEEEETTTCHHHHHHHHHTTCCS-SCEEEE--TTEE---EESC-CHHH
T ss_pred             EEEEeCCCCccHHHHHHHHHh-------cCceeEEEeecCCHHHHHHHHhcCCCC-CCEEEE--CCEE---EECC-CHHH
Confidence            456888999999887655543       36888899999877543   4568886 999776  5643   4565 4455


Q ss_pred             H
Q psy16770        228 M  228 (554)
Q Consensus       228 i  228 (554)
                      |
T Consensus        69 i   69 (76)
T d1h75a_          69 I   69 (76)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.64  E-value=0.041  Score=42.42  Aligned_cols=52  Identities=10%  Similarity=0.085  Sum_probs=41.4

Q ss_pred             cCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHh
Q psy16770        284 HRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITD  345 (554)
Q Consensus       284 ~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~  345 (554)
                      ..+++.|..++++  .+++++++|+|.+ .||+++  + .+    .++.|.++.+.|.++|+
T Consensus        43 ~~~~i~~~~vd~~--~~~~l~~~~~I~~-vPt~~~--n-g~----~~~~G~~~~~~l~~~le   94 (96)
T d1hyua4          43 LNPRIKHTAIDGG--TFQNEITERNVMG-VPAVFV--N-GK----EFGQGRMTLTEIVAKVD   94 (96)
T ss_dssp             HCTTEEEEEEETT--TCHHHHHHTTCCS-SSEEEE--T-TE----EEEESCCCHHHHHHHHC
T ss_pred             hCCceEEEEEecc--cchHHHhhccccc-ccEEEE--C-CE----EEEecCCCHHHHHHHHh
Confidence            4678999999987  7899999999997 999865  2 22    34668888888888775

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.01  Score=52.84  Aligned_cols=89  Identities=18%  Similarity=0.275  Sum_probs=64.6

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC----------------------------cHHHHHH
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN----------------------------EQGLARR  197 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~----------------------------~~~l~~~  197 (554)
                      ++++++.|| ++||+.|......+.+..++++..|+.+..|.++.                            +..+++.
T Consensus        34 Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~~  113 (197)
T d1qmva_          34 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSED  113 (197)
T ss_dssp             TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHHH
Confidence            457788888 99999999999999999999998889999888764                            3468889


Q ss_pred             hCCcC-----CCCcceec-cCCeEEE---EeC-CcccHHHHHHHHHHh
Q psy16770        198 LGVGS-----QLPQIALL-TDGRTSF---FKE-PSFSVQKMVEFFRLK  235 (554)
Q Consensus       198 ~~v~~-----~~Pti~~~-~~g~~~~---y~~-g~~~~~~i~~fl~~~  235 (554)
                      ||+-.     .+|+..++ ++|.+..   +.. -.+..+++...+...
T Consensus       114 ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         114 YGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             hCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhh
Confidence            98852     14444444 6776532   221 125778887776644

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.0088  Score=52.27  Aligned_cols=43  Identities=28%  Similarity=0.496  Sum_probs=29.1

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhC--CCCEEEEEEEe
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELS--PLGVGFFTVHV  188 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~--~~~v~~~~Vd~  188 (554)
                      .+.+.+|+|++-.|+||++++|....+.+..+  +.++.+...+.
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~   61 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV   61 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEEC
T ss_pred             CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEec
Confidence            45678999999999999999987644433222  22355655543

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.26  E-value=0.015  Score=43.82  Aligned_cols=55  Identities=7%  Similarity=-0.051  Sum_probs=44.0

Q ss_pred             ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCChhHHHhHHhcC
Q psy16770        283 KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPVPTLQDITDNN  347 (554)
Q Consensus       283 ~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~~~l~~fi~~~  347 (554)
                      ++.+++.|+.++++  .+.+++++|+|.+ .||+++++.       ..+.|..+.+.|.++|+.+
T Consensus        29 ~~~~~v~~~~vd~d--~~~~l~~~~~V~~-~Pt~~~~~~-------~~~~G~~~~~~l~~~i~~~   83 (85)
T d1nhoa_          29 EFGDKIDVEKIDIM--VDREKAIEYGLMA-VPAIAINGV-------VRFVGAPSREELFEAINDE   83 (85)
T ss_dssp             HHCSSCCEEEECTT--TCGGGGGGTCSSC-SSEEEETTT-------EEEECSSCCHHHHHHHHHH
T ss_pred             cccccccccccccc--cchhhHHhcCceE-eCEEEECCc-------EEEEcCCCHHHHHHHHHHh
Confidence            55778999999887  7899999999997 999887432       2356777888999998754

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.028  Score=50.66  Aligned_cols=89  Identities=12%  Similarity=0.132  Sum_probs=63.1

Q ss_pred             CCCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC-------------------------------cHH
Q psy16770        146 YTTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN-------------------------------EQG  193 (554)
Q Consensus       146 ~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~-------------------------------~~~  193 (554)
                      .++++++.|| ++||+.|....+.+++..++++..|+.+..|.++.                               +..
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~  105 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRE  105 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCH
T ss_pred             CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhhhhhhhhccccccccCcccccccCcccH
Confidence            3457777778 78999999999999999999998888888876652                               457


Q ss_pred             HHHHhCCcC-----------CCCcceec-cCCeEEE--Ee---CCcccHHHHHHHHHHh
Q psy16770        194 LARRLGVGS-----------QLPQIALL-TDGRTSF--FK---EPSFSVQKMVEFFRLK  235 (554)
Q Consensus       194 l~~~~~v~~-----------~~Pti~~~-~~g~~~~--y~---~g~~~~~~i~~fl~~~  235 (554)
                      +|+.||+-.           ..+++.++ .+|.+..  .+   -| |+.++++.-+...
T Consensus       106 va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~g-R~~dEiLr~l~al  163 (220)
T d1prxa_         106 LAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTG-RNFDEILRVVISL  163 (220)
T ss_dssp             HHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBC-CCHHHHHHHHHHH
T ss_pred             HHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcc-cchHHHHHHHHHH
Confidence            899998852           02334444 6776522  22   13 4788887766543

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.93  E-value=0.045  Score=42.82  Aligned_cols=82  Identities=18%  Similarity=0.252  Sum_probs=60.8

Q ss_pred             CCCcEEEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCC--eEEEEeCCcc
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDG--RTSFFKEPSF  223 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g--~~~~y~~g~~  223 (554)
                      .+.+++|=|+.+--+   .....|.++|+.+++ .+.|+.+   .++++++++|++  .|++++|++-  ....|.|...
T Consensus        17 ~d~v~VvGfF~~~~~---~~~~~F~~~A~~~rd-~~~F~~t---~d~~va~~~~v~--~~~vvlfr~fde~~~~~~~~~~   87 (102)
T d1a8ya2          17 EDEIKLIGYFKNKDS---EHYKAFKEAAEEFHP-YIPFFAT---FDSKVAKKLTLK--LNEIDFYEAFMEEPVTIPDKPN   87 (102)
T ss_dssp             CSSCEEEEECSSTTC---HHHHHHHHHHHHHTT-TSCEEEE---CCHHHHHHHCCC--TTCEEEECTTCSSEEECSSSSC
T ss_pred             CCCEEEEEEECCCCc---HHHHHHHHHHHHcCC-CceEEEE---CCHHHHHHcCCC--CCCEEEeeecCCCceecCCCCC
Confidence            456788878764322   356789999999976 3778754   488999999996  6999999653  3466665446


Q ss_pred             cHHHHHHHHHHhC
Q psy16770        224 SVQKMVEFFRLKL  236 (554)
Q Consensus       224 ~~~~i~~fl~~~~  236 (554)
                      +.++|.+|++.+-
T Consensus        88 t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          88 SEEEIVNFVEEHR  100 (102)
T ss_dssp             CHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhc
Confidence            8899999998753

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=94.67  E-value=0.0083  Score=44.17  Aligned_cols=64  Identities=16%  Similarity=0.355  Sum_probs=42.2

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcH---HHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQ---GLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQK  227 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~---~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~  227 (554)
                      ++.|..++|++|+++...+++.       |+.+..+|.+.+.   .+.+..|... +|.+.  .+|+   +.||.   ++
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~-------~i~~~~~~v~~~~~~~~~~~~~~~~t-vP~i~--i~g~---~IGG~---~e   70 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK-------GLSFEEIILGHDATIVSVRAVSGRTT-VPQVF--IGGK---HIGGS---DD   70 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------TCCCEEEETTTTCCHHHHHHHTCCSS-SCEEE--ETTE---EEESH---HH
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-------CCCeEEEEccCcHHHHHHHHHhCCcc-CCEEE--ECCE---EEECh---HH
Confidence            5668999999999877655532       5677777776643   3444567776 99864  4674   44664   55


Q ss_pred             HHH
Q psy16770        228 MVE  230 (554)
Q Consensus       228 i~~  230 (554)
                      |.+
T Consensus        71 l~~   73 (74)
T d1nm3a1          71 LEK   73 (74)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            544

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=94.63  E-value=0.013  Score=43.94  Aligned_cols=66  Identities=17%  Similarity=0.366  Sum_probs=45.0

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH----HHHHhCCcCCCCcceeccCCeEEEEeCCcccHH
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG----LARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQ  226 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~----l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~  226 (554)
                      +..|..+||++|.++...+++       .++.+..+|.+.+..    +-+..|.++ +|.+.  .+|+   +.||.   +
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~-------~~i~y~~~di~~~~~~~~~~~~~~g~~t-vP~i~--i~~~---~IGG~---~   66 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSS-------KGVSFQELPIDGNAAKREEMIKRSGRTT-VPQIF--IDAQ---HIGGY---D   66 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------HTCCCEEEECTTCSHHHHHHHHHHSSCC-SCEEE--ETTE---EEESH---H
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-------cCCCeEEEeccchHHHHHHHHHHhCCCC-CCeEE--ECCE---EEecH---H
Confidence            456889999999987655543       257888888887654    345568886 99864  4675   44675   4


Q ss_pred             HHHHHH
Q psy16770        227 KMVEFF  232 (554)
Q Consensus       227 ~i~~fl  232 (554)
                      ++.++.
T Consensus        67 el~~l~   72 (82)
T d1fova_          67 DLYALD   72 (82)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555543

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.18  Score=41.95  Aligned_cols=104  Identities=12%  Similarity=0.095  Sum_probs=63.6

Q ss_pred             cCCcccHHHHHhhhhcCCceEEEEEecCCchhHHHHHHh------h--ccCCceEEEEEEccCCCChhHHhHhCCCCCCc
Q psy16770        243 PLSATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLINA------F--KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKD  314 (554)
Q Consensus       243 ~~t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~~a------~--~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~P  314 (554)
                      +.-..++++.+...+..+|+++|.|....-.....+...      +  .+..++.+..++.+......++++|++.+ +|
T Consensus        25 i~~~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~-~P  103 (147)
T d2dlxa1          25 LMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGD-FP  103 (147)
T ss_dssp             TSCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCS-SS
T ss_pred             ccccCCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCc-ee
Confidence            334556777665544679999998875544443333221      1  12345667777766444577899999997 99


Q ss_pred             eEEEEeCCCCCCCceeecCCCChh----HHHhHHhcCCC
Q psy16770        315 SLLIFKEDKDRPSASITMNSIPVP----TLQDITDNNPY  349 (554)
Q Consensus       315 tlvvfk~~~~~~~~~i~~~~~~~~----~l~~fi~~~~~  349 (554)
                      +++++.+...+...  ..+.++..    .|.+|+..|..
T Consensus       104 ti~~idp~~ge~v~--~~~~~~~~~fl~~L~~fl~~~~~  140 (147)
T d2dlxa1         104 YVSILDPRTGQKLV--EWHQLDVSSFLDQVTGFLGEHGQ  140 (147)
T ss_dssp             EEEEECTTTCCCCE--EESSCCHHHHHHHHHHHHHHTCS
T ss_pred             EEEEEeCCCCeEec--ccCCCCHHHHHHHHHHHHhhCCC
Confidence            99999864333322  22334443    46777776643

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=92.96  E-value=0.055  Score=46.18  Aligned_cols=42  Identities=12%  Similarity=0.105  Sum_probs=34.5

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN  190 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~  190 (554)
                      ++++++.|| +.||+.|....+.+++...+++  ++.+..|.++.
T Consensus        42 Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~~~vi~iS~d~   84 (164)
T d1q98a_          42 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADL   84 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--TEEEEEEESSC
T ss_pred             CcEEEEEecCccccCcccHHHHHHHHHHHHhc--cceEEeecCCc
Confidence            457788888 6688899999999999999987  47888887765

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.71  E-value=0.18  Score=41.97  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=23.8

Q ss_pred             CcCCCCcceec-cCCeEEEEeCCcccHH----HHHHHHHHhCC
Q psy16770        200 VGSQLPQIALL-TDGRTSFFKEPSFSVQ----KMVEFFRLKLP  237 (554)
Q Consensus       200 v~~~~Pti~~~-~~g~~~~y~~g~~~~~----~i~~fl~~~~~  237 (554)
                      +.+ .|++.++ ++|+++.++++..+.+    .|.+-|++.++
T Consensus       127 i~h-~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~ll~  168 (169)
T d2b7ka1         127 VDH-SIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYVP  168 (169)
T ss_dssp             TTT-CCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHCCC
T ss_pred             eec-cceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence            454 6777777 8899987775543444    46666666554

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.68  E-value=0.026  Score=44.51  Aligned_cols=64  Identities=13%  Similarity=0.254  Sum_probs=42.3

Q ss_pred             EEEEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHH-----HHHHhCCcCCCCcceeccCCeEEEEeCCc
Q psy16770        151 LILFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQG-----LARRLGVGSQLPQIALLTDGRTSFFKEPS  222 (554)
Q Consensus       151 lV~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~-----l~~~~~v~~~~Pti~~~~~g~~~~y~~g~  222 (554)
                      +|.|..+||++|.+....+.+..-..  ..+.+..+|...+..     +.+..|.+. +|.|.  .+|+   +.||.
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~--~~~~~~e~d~~~d~~~~~~~l~~~~g~~t-vPqIf--i~g~---~IGG~   82 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKE--GLLEFVDITATSDTNEIQDYLQQLTGART-VPRVF--IGKE---CIGGC   82 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCT--TSEEEEEGGGSTTHHHHHHHHHHHHSCCC-SCEEE--ETTE---EEESH
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCcc--ceeeeeecccccccHHHHHHHhhccCCCc-CcEEE--ECCE---EEecH
Confidence            66799999999998877666532222  236677777766542     334457776 99764  4775   55775

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.58  E-value=0.15  Score=45.59  Aligned_cols=98  Identities=10%  Similarity=-0.001  Sum_probs=59.5

Q ss_pred             CcccHHHHHhhhhcCCceEEEEEecCCchhHHHHH-----HhhccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEE
Q psy16770        245 SATNVDAFLDNWREDNKVHALLFQRSLPVRLRYLI-----NAFKHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIF  319 (554)
Q Consensus       245 t~~~~~~fl~~~~~~~~~~v~~f~~~~~~~~~~~~-----~a~~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvf  319 (554)
                      +.+++.+.+..- +.+.++|+.|.....+......     +|.. ...++|..++++   ...+..+|++.. .|||++|
T Consensus       106 ~~~~f~~~v~~~-~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~-~~~vkF~ki~~~---~~~~~~~~~i~~-lPtl~~y  179 (217)
T d2trcp_         106 TGEQFLETIEKE-QKVTTIVVNIYEDGVRGCDALNSSLECLAAE-YPMVKFCKIRAS---NTGAGDRFSSDV-LPTLLVY  179 (217)
T ss_dssp             SHHHHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHHHHHHHHTT-CTTSEEEEEEHH---HHTCSTTSCGGG-CSEEEEE
T ss_pred             CHHHHHHHHHhc-CCCCeEEEEEEcCCCCChhhhhhhHHHHhhh-cccceEEEEccc---cchhHHhCCCCC-CCeEEEE
Confidence            446676666542 2345666655544443333222     2223 467999999865   223568999997 9999999


Q ss_pred             eCCCCCCCce-----eecCCCChhHHHhHHhcCCC
Q psy16770        320 KEDKDRPSAS-----ITMNSIPVPTLQDITDNNPY  349 (554)
Q Consensus       320 k~~~~~~~~~-----i~~~~~~~~~l~~fi~~~~~  349 (554)
                      +++.. ...+     .-...++...|..||..+..
T Consensus       180 k~G~~-v~~~vg~~~~~g~~~~~~~lE~~L~~~g~  213 (217)
T d2trcp_         180 KGGEL-ISNFISVAEQFAEDFFAADVESFLNEYGL  213 (217)
T ss_dssp             ETTEE-EEEETTGGGGSCSSCCHHHHHHHHHTTTC
T ss_pred             ECCEE-EEEEECccccccccCCHHHHHHHHHHcCC
Confidence            98432 1111     11345777889999887743

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.57  E-value=0.048  Score=46.66  Aligned_cols=41  Identities=15%  Similarity=0.105  Sum_probs=30.6

Q ss_pred             CCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC
Q psy16770        147 TTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN  190 (554)
Q Consensus       147 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~  190 (554)
                      ++++++.|| +.||+.|....+.+.+..+.+   |+.+..|..+.
T Consensus        43 Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~---g~~vv~Is~d~   84 (166)
T d1xvqa_          43 GKSVLLNIFPSVDTPVCATSVRTFDERAAAS---GATVLCVSKDL   84 (166)
T ss_dssp             TSCEEEEECSCCCSSCCCHHHHHHHHHHHHT---TCEEEEEESSC
T ss_pred             CcEEEEEeeecccccccHHHHHHHhhhcccc---cccccccccch
Confidence            457888888 668888999888888776654   46777776554

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.43  E-value=0.094  Score=44.90  Aligned_cols=44  Identities=18%  Similarity=0.238  Sum_probs=35.6

Q ss_pred             CCCcEEEEEEccccc-ccccchHHHHHHHHHhC--CCCEEEEEEEec
Q psy16770        146 YTTPHLILFYSDWCF-ACLQVEPIFKKLMDELS--PLGVGFFTVHVH  189 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~-~C~~l~p~~~~~a~~l~--~~~v~~~~Vd~~  189 (554)
                      .+++++|.|+..||+ .|....+.+.++.+.++  +..+.+..|..+
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            357999999999997 69999999999988875  234777777665

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=88.20  E-value=0.19  Score=44.86  Aligned_cols=45  Identities=9%  Similarity=0.163  Sum_probs=39.3

Q ss_pred             CCCcEEEEEE-cccccccccchHHHHHHHHHhCCCCEEEEEEEecC
Q psy16770        146 YTTPHLILFY-SDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHN  190 (554)
Q Consensus       146 ~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~  190 (554)
                      .++++++.|| ++||+.|......|.+...+++..|+.+..|.++.
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds   74 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNS   74 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSC
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCcc
Confidence            3567888888 99999999999999999999998889999888764

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.50  E-value=3.4  Score=31.20  Aligned_cols=79  Identities=9%  Similarity=0.119  Sum_probs=55.4

Q ss_pred             CCceEEEEEecCCchhHHHHHHhh-ccCCceEEEEEEccCCCChhHHhHhCCCCCCceEEEEeCCCCCCCceeecCCCCh
Q psy16770        259 DNKVHALLFQRSLPVRLRYLINAF-KHRTTIVFGVIVYDQEDSSSVFQRFKVPGDKDSLLIFKEDKDRPSASITMNSIPV  337 (554)
Q Consensus       259 ~~~~~v~~f~~~~~~~~~~~~~a~-~~~~~v~Fg~v~~~~~~~~~l~~k~~i~~~~Ptlvvfk~~~~~~~~~i~~~~~~~  337 (554)
                      ...+.+++|....-+........+ +....+.+-.+..+...++++.++|++.  .|+|++  ++ +    .+..+.++.
T Consensus        14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~~~~v~vd~~~~~~l~~~y~~~--VPvl~i--dg-~----~~~~g~~d~   84 (100)
T d1wjka_          14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYKFD--IPVFHL--NG-Q----FLMMHRVNT   84 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSSSS--CSEEEE--SS-S----EEEESSCCH
T ss_pred             CCCCEEEEEECCCCCChHHHHHHHHHhhhhcceEEEecccccCHHHHHHhccc--CCceee--cC-c----eEEeCCCCH
Confidence            456778888877766666666555 4455566667777777889999999986  797765  22 1    234567888


Q ss_pred             hHHHhHHhc
Q psy16770        338 PTLQDITDN  346 (554)
Q Consensus       338 ~~l~~fi~~  346 (554)
                      ..|.++|+.
T Consensus        85 ~~L~~~L~~   93 (100)
T d1wjka_          85 SKLEKQLRK   93 (100)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHHH
Confidence            889988874

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.23  E-value=0.28  Score=38.48  Aligned_cols=69  Identities=16%  Similarity=0.216  Sum_probs=43.0

Q ss_pred             CCcEEEEEEc-----ccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHH----HHhCCcCCCCcceeccCCeEEE
Q psy16770        147 TTPHLILFYS-----DWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLA----RRLGVGSQLPQIALLTDGRTSF  217 (554)
Q Consensus       147 ~~~~lV~Fya-----~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~----~~~~v~~~~Pti~~~~~g~~~~  217 (554)
                      +.+++| |.-     |.|+.|.+....+.       ..++.+..+|.+.+.++.    +.-+.+. +|.|.  .+|+   
T Consensus        14 ~~~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~-------~~~i~~~~~~v~~~~~~~~~l~~~t~~~T-vPqIF--i~g~---   79 (109)
T d1wika_          14 KASVML-FMKGNKQEAKCGFSKQILEILN-------STGVEYETFDILEDEEVRQGLKTFSNWPT-YPQLY--VRGD---   79 (109)
T ss_dssp             TSSEEE-EESSTTTCCCSSTHHHHHHHHH-------HTCSCEEEEESSSCHHHHHHHHHHHSCCS-SCEEE--CSSS---
T ss_pred             cCCEEE-EeCCCCCCCCChHHHHHHHHHH-------hcCCCceEEEecccHHHHHHHHHhcCCCC-CCeEE--ECCE---
Confidence            335444 643     88999988765543       336788888988876543    4446664 77654  5775   


Q ss_pred             EeCCcccHHHHHHHH
Q psy16770        218 FKEPSFSVQKMVEFF  232 (554)
Q Consensus       218 y~~g~~~~~~i~~fl  232 (554)
                      +.||.   +++.+..
T Consensus        80 ~IGG~---ddl~~l~   91 (109)
T d1wika_          80 LVGGL---DIVKELK   91 (109)
T ss_dssp             EEECH---HHHHHHH
T ss_pred             EEcCH---HHHHHHH
Confidence            45675   4555433

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=83.55  E-value=0.22  Score=43.53  Aligned_cols=43  Identities=28%  Similarity=0.567  Sum_probs=32.4

Q ss_pred             CCCcEEEEEEcccccccccchHHHHH---HHHHhCCCCEEEEEEEec
Q psy16770        146 YTTPHLILFYSDWCFACLQVEPIFKK---LMDELSPLGVGFFTVHVH  189 (554)
Q Consensus       146 ~~~~~lV~Fya~wC~~C~~l~p~~~~---~a~~l~~~~v~~~~Vd~~  189 (554)
                      .+++.+|+|++-+|+||.+++|.+..   +.+.+.+ ++.|..+...
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~-~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCC-CcEEEEEecC
Confidence            35688999999999999999997653   4444443 5788777765

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=80.52  E-value=2.6  Score=30.03  Aligned_cols=72  Identities=22%  Similarity=0.331  Sum_probs=45.4

Q ss_pred             EEEcccccccccchHHHHHHHHHhCCCCEEEEEEEecCcHHHHHHhCCcCCCCcceeccCCeEEEEeCCcccHHHHHHHH
Q psy16770        153 LFYSDWCFACLQVEPIFKKLMDELSPLGVGFFTVHVHNEQGLARRLGVGSQLPQIALLTDGRTSFFKEPSFSVQKMVEFF  232 (554)
Q Consensus       153 ~Fya~wC~~C~~l~p~~~~~a~~l~~~~v~~~~Vd~~~~~~l~~~~~v~~~~Pti~~~~~g~~~~y~~g~~~~~~i~~fl  232 (554)
                      .|+.+.|+.|.+..-...     .++..+.+..++-+....+.+..+-. ++|++.. .+|..+.      ....|.+|+
T Consensus         3 LY~~~~cP~~~rvr~~l~-----~kgi~~e~~~~~~~~~~~~~~~~p~~-~VP~L~~-~dg~~i~------eS~~I~~yL   69 (75)
T d1g7oa2           3 LYIYDHCPYCLKARMIFG-----LKNIPVELHVLLNDDAETPTRMVGQK-QVPILQK-DDSRYMP------ESMDIVHYV   69 (75)
T ss_dssp             EEECTTCHHHHHHHHHHH-----HHTCCCEEEECCTTTTHHHHHHHSSS-CCCEEEE-TTTEEEE------CHHHHHHHH
T ss_pred             EEccCCCCchHHHHHHHH-----HhCCCcccccccccchHHHHHhCCCC-ceEEEEE-cCCCEEe------cHHHHHHHH
Confidence            367889999987653333     33444555555555555666666666 4998765 4565432      348899999


Q ss_pred             HHhCC
Q psy16770        233 RLKLP  237 (554)
Q Consensus       233 ~~~~~  237 (554)
                      .+..+
T Consensus        70 d~~~G   74 (75)
T d1g7oa2          70 DKLDG   74 (75)
T ss_dssp             HHHTT
T ss_pred             HHhhC
Confidence            87654