Psyllid ID: psy16778

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430---
Protein Sequence
MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPTRAPPNYSDFVCVDDFEQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLKEDQD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccEEEEccccccccccccccEEccccccccEEEcccccccccccccHHHHHHHHHHcccEEEEcccccccHHHHHHHcccccccEEEEccccHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccccHHHHHHcccccccccccccccHHHccHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEccccccccEEEEEEccccccccccccccEEEEEccccccHHHHHHHHHHccccEEEEHHHHccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHccccEEEEEEEccHHHHHHHHcccccccccHHHHHHHHHHcccccccccccEEEEEccccHHHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHcccccEEEEEcccccccEEEccccccccEEEccccccccccccHHHHHHHHHHHccccEEEccHHHccHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHHHccccEEEEEEcHHHHcccHHHHHccccccccccHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHccccEEEEEEcHHHHcccHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mavsnfgnwrywgmwppqYVVTLIMTttlspsgegspsTVFVIMGVsgsgkstigESLATRlgvkfidgdhlhpqsnidkmsakqplndedrrpwlNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEhfmpadllesqfqtleepdplvepdvrtvsvneplegivsksaimpptrappnysdfvcvdDFEQFALKVLRIRPRvmrdlskrtlvtdalghpvqipigvspAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEElaektpqttKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDtnvfgtryadirnkfnmpshlnieelaektpqttKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDtnvfgtryadirnkfnmpshlkedqd
Flexible Loop (DISEMBL)
mavsnfgnwrywgmWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIihqlnvdnlTGVLVCSALRRNyrdiirnnnRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEepdplvepdvrtvsvneplegivsksaimpptrAPPNYSDFVCVDDFEQFALKvlrirprvmrDLSKRtlvtdalghpvqipiGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSieelaektpqttkwFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEelaektpqttKWFQLYIYRDREITKSLVQRAEKAGYKALvltvdtnvfgtryadirnkfnmpshlkedqd
Low Complexity Region (SEG)
MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALrrnyrdiirnnnrVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPTRAPPNYSDFVCVDDFEQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYilstisttsieelAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLKEDQD
Disordered region (IsUnstruct)
****NFGNWRYWGMWPPQYVVTLIMTTTL*********TVFVIMGVSGSGKSTIGESLATRLGVKFIDGD***********************PWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLL********************************************NYSDFVCVDDFEQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKF***********
Disordered Region (DISOPRED)
****************************************FVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPTRAPPNYSDFVCVDDFEQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNM*********
Disordered Region (DISEMBL)
MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPTRAPPNYSDFVCVDDFEQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMP********
Disordered Region (DISPRO)
**VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPTRAPPNYSDFVCVDDFEQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSH******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPTRAPPNYSDFVCVDDFEQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLKEDQD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	433	2.2.26 [Sep-21-2011]
P46859	175	Thermoresistant gluconoki	N/A	N/A	0.362	0.897	0.465	2e-38
P39208	187	Thermosensitive gluconoki	N/A	N/A	0.360	0.834	0.474	3e-37
Q9UJM8	370	Hydroxyacid oxidase 1 OS=	yes	N/A	0.364	0.427	0.376	2e-32
Q7FAS1	367	Peroxisomal (S)-2-hydroxy	yes	N/A	0.452	0.534	0.391	1e-30
B8AUI3	367	Peroxisomal (S)-2-hydroxy	N/A	N/A	0.452	0.534	0.391	1e-30
Q9WU19	370	Hydroxyacid oxidase 1 OS=	yes	N/A	0.351	0.410	0.377	1e-30
Q10242	193	Probable gluconokinase OS	yes	N/A	0.337	0.756	0.441	3e-29
O49506	368	Peroxisomal (S)-2-hydroxy	no	N/A	0.325	0.383	0.436	2e-28
Q5T6J7	187	Probable gluconokinase OS	no	N/A	0.309	0.716	0.431	2e-28
Q6YT73	369	Peroxisomal (S)-2-hydroxy	no	N/A	0.327	0.384	0.455	4e-28

>sp|P46859|GNTK_ECOLI Thermoresistant gluconokinase OS=Escherichia coli (strain K12) GN=gntK PE=1 SV=4

 Score =  160 bits (406), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/159 (46%), Positives = 110/159 (69%), Gaps = 2/159 (1%)

Query: 40  VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI 99
           ++V+MGVSGSGKS +   +A +L   F+DGD LHP+ NI+KM++ +PLND+DR+PWL  +
Sbjct: 10  IYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQAL 69

Query: 100 NRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-RVVFIYLKAEFGVILSRLQKRAEHFM 158
           N     +   N   ++VCSAL+++YRD++R  N  + FIYLK +F VI SRL+ R  HF 
Sbjct: 70  NDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF 129

Query: 159 PADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKS 197
              +L +QF+TL+EP    E DV  V +++PLEG+V+ +
Sbjct: 130 KTQMLVTQFETLQEPGA-DETDVLVVDIDQPLEGVVAST 167

Escherichia coli (strain K12) (taxid: 83333)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 2

>sp|P39208|IDNK_ECOLI Thermosensitive gluconokinase OS=Escherichia coli (strain K12) GN=idnK PE=3 SV=1

 Score =  156 bits (395), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/158 (47%), Positives = 103/158 (65%), Gaps = 2/158 (1%)

Query: 41  FVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNIN 100
           F++MGVSGSGK+ IG  +A  L  KFIDGD LHP  NIDKMS   PL+DEDR PWL  +N
Sbjct: 6   FILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLN 65

Query: 101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-RVVFIYLKAEFGVILSRLQKRAEHFMP 159
              + L   N TG +VCS+L++ YRDI+R  +  V F++L  ++  IL+R+Q+RA HFMP
Sbjct: 66  DASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMP 125

Query: 160 ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKS 197
             LL+SQF+ LE P    E D+  + +N  +  +  + 
Sbjct: 126 VALLKSQFEALERPQA-DEQDIVRIDINHDIANVTEQC 162

Escherichia coli (strain K12) (taxid: 83333)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9UJM8|HAOX1_HUMAN Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 106/186 (56%), Gaps = 28/186 (15%)

Query: 212 FVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLVT 243
            +C++D+EQ A  VL                            ++ PR++R++++  L T
Sbjct: 5   LICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLST 64

Query: 244 DALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQ 303
             LG  V +PI V   AMQ++AH +GE+    A   +G   +LS+ +T+SIEE+AE  P+
Sbjct: 65  SVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPE 124

Query: 304 TTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIE 363
             +W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT   G R  D+RN+F +P  L ++
Sbjct: 125 ALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMK 184

Query: 364 ELAEKT 369
                T
Sbjct: 185 NFETST 190

Has 2-hydroxyacid oxidase activity. Most active on the 2-carbon substrate glycolate, but is also active on 2-hydroxy fatty acids, with high activity towards 2-hydroxy palmitate and 2-hydroxy octanoate.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q7FAS1|GLO3_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. japonica GN=GLO3 PE=2 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/207 (39%), Positives = 118/207 (57%), Gaps = 11/207 (5%)

Query: 194 VSKSAIMPPTRAPPNYSDFVCVDDFEQFALKVLR-------IRPRVMRDLSKRTLVTDAL 246
           VS+   +   + P    D+      +Q+ LK  R        RPR++ D+S+  + T+ L
Sbjct: 7   VSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRINMATNVL 66

Query: 247 GHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTK 306
           G  + +PI ++P+AMQK+AH EGE+  A A    G I  LS+ ST+S+EE+    P   +
Sbjct: 67  GFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSAAP-GIR 125

Query: 307 WFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHL---NIE 363
           +FQLY+Y+DR I + LV+RAE AG+KA+ LTVDT   G R ADI+N+FN+P HL   N E
Sbjct: 126 FFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLVLKNFE 185

Query: 364 ELAEKTPQTTKWFQLYIYRDREITKSL 390
            L       T    L  Y   ++ +SL
Sbjct: 186 ALDLGKMDKTNDSGLASYVASQVDRSL 212

Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|B8AUI3|GLO3_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. indica GN=GLO3 PE=3 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/207 (39%), Positives = 118/207 (57%), Gaps = 11/207 (5%)

Query: 194 VSKSAIMPPTRAPPNYSDFVCVDDFEQFALKVLR-------IRPRVMRDLSKRTLVTDAL 246
           VS+   +   + P    D+      +Q+ LK  R        RPR++ D+S+  + T+ L
Sbjct: 7   VSEYEQLAKQKLPKMIYDYYASGAEDQWTLKENREAFSRILFRPRILIDVSRINMATNVL 66

Query: 247 GHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTK 306
           G  + +PI ++P+AMQK+AH EGE+  A A    G I  LS+ ST+S+EE+    P   +
Sbjct: 67  GFNISMPIMIAPSAMQKMAHPEGELATARAASAAGTIMTLSSWSTSSVEEVNSAAP-GIR 125

Query: 307 WFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHL---NIE 363
           +FQLY+Y+DR I + LV+RAE AG+KA+ LTVDT   G R ADI+N+FN+P HL   N E
Sbjct: 126 FFQLYVYKDRNIVRQLVRRAELAGFKAIALTVDTPRLGRREADIKNRFNLPPHLVLKNFE 185

Query: 364 ELAEKTPQTTKWFQLYIYRDREITKSL 390
            L       T    L  Y   ++ +SL
Sbjct: 186 ALDLGKMDKTNDSGLASYVASQVDRSL 212

Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q9WU19|HAOX1_MOUSE Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 101/180 (56%), Gaps = 28/180 (15%)

Query: 212 FVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLVT 243
            VC+ D+EQ    VL                            ++ PR++R+++   L T
Sbjct: 5   LVCISDYEQHVRSVLQKSVYDYYRSGANDQETLADNIQAFSRWKLYPRMLRNVADIDLST 64

Query: 244 DALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQ 303
             LG  V +PI V   AMQ +AH +GE+    A   +G   +LS+ +T+SIEE+AE  P+
Sbjct: 65  SVLGQRVSMPICVGATAMQCMAHVDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPE 124

Query: 304 TTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIE 363
             +W QLYIY+DREI++ +V+RAEK GYKA+ +TVDT   G R  D+RN+F +P  L ++
Sbjct: 125 ALRWMQLYIYKDREISRQIVKRAEKQGYKAIFVTVDTPYLGNRIDDVRNRFKLPPQLRMK 184

Has 2-hydroxyacid oxidase activity. Most active on the 2-carbon substrate glycolate, but is also active on 2-hydroxy fatty acids, with high activity towards 2-hydroxy palmitate and 2-hydroxy octanoate.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q10242|GNTK_SCHPO Probable gluconokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4G9.12 PE=3 SV=1

 Score =  130 bits (326), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 102/154 (66%), Gaps = 8/154 (5%)

Query: 40  VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI 99
           VFV++G +GSGK+T+ ++++ +LG ++I+GD LHP++NI+KMS   PLND DR  WL+N 
Sbjct: 16  VFVVIGPAGSGKTTMAKAVSEKLGFEYIEGDDLHPKANIEKMSQGHPLNDNDRWGWLHNC 75

Query: 100 -NRIIHQLNVDNLTG-VLVCSALRRNYRDIIRNNNR-----VVFIYLKAEFGVILSRLQK 152
                 +L+ +++ G VL CSAL+R+YRDI+R++       + FIYL A    ++ R   
Sbjct: 76  GGACAMELDKESIKGVVLTCSALKRSYRDILRSSLEHRPAILRFIYLAASRETLIKRTTS 135

Query: 153 RAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSV 186
           R  H+M AD++ESQ   LE P    E DV T+SV
Sbjct: 136 RKNHYMKADMVESQLAILEAPTA-DEKDVITISV 168

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O49506|GLO5_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/142 (43%), Positives = 93/142 (65%), Gaps = 1/142 (0%)

Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A   +  RPR++ D+SK  + T  LG  + +PI ++P AMQK+AH +GE+  A A    G
Sbjct: 41  AFSRILFRPRILIDVSKIDVSTTVLGFNISMPIMIAPTAMQKMAHPDGELATARATSAAG 100

Query: 282 GIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
            I  LS+ +T S+EE+A   P   ++FQLY+Y+DR +   LV+RAE+AG+KA+ LTVDT 
Sbjct: 101 TIMTLSSWATCSVEEVASTGPG-IRFFQLYVYKDRNVVIQLVKRAEEAGFKAIALTVDTP 159

Query: 342 VFGTRYADIRNKFNMPSHLNIE 363
             G R +DI+N+F +P  L ++
Sbjct: 160 RLGRRESDIKNRFALPRGLTLK 181

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q5T6J7|GNTK_HUMAN Probable gluconokinase OS=Homo sapiens GN=IDNK PE=2 SV=1

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 87/153 (56%), Gaps = 19/153 (12%)

Query: 40  VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI 99
             ++MGVSGSGKST+G  LA+ LG KF D D  HP+ N  KM    PLND+DR PWL N+
Sbjct: 6   ALLVMGVSGSGKSTVGALLASELGWKFYDADDYHPEENRRKMGKGIPLNDQDRIPWLCNL 65

Query: 100 NRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-------------------RVVFIYLK 140
           + I+ +        VL CSAL++ YRDI+                       +++ ++L 
Sbjct: 66  HDILLRDVASGQRVVLACSALKKTYRDILTQGKDGVALKCEESGKEAKQAEMQLLVVHLS 125

Query: 141 AEFGVILSRLQKRAEHFMPADLLESQFQTLEEP 173
             F VI  RL KR  HFMP +LL+SQF+TLE P
Sbjct: 126 GSFEVISGRLLKREGHFMPPELLQSQFETLEPP 158

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q6YT73|GLO5_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Oryza sativa subsp. japonica GN=GLO5 PE=2 SV=1

 Score =  125 bits (315), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/145 (45%), Positives = 99/145 (68%), Gaps = 3/145 (2%)

Query: 219 EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVG 278
           E FA ++L  RPR++ D+SK  + T  LG  + +PI ++P+AMQK+AH +GE   A A  
Sbjct: 41  EAFA-RIL-FRPRILIDVSKIDMATTVLGFKISMPIMIAPSAMQKMAHPDGEYATARAAS 98

Query: 279 EVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTV 338
             G I  LS+ +T+S+EE+A   P   ++FQLY+Y+DR + + LV+RAE+AG+KA+ LTV
Sbjct: 99  AAGTIMTLSSWATSSVEEVASTGPGI-RFFQLYVYKDRRVVEQLVRRAERAGFKAIALTV 157

Query: 339 DTNVFGTRYADIRNKFNMPSHLNIE 363
           DT   G R ADI+N+F +P  L ++
Sbjct: 158 DTPRLGRREADIKNRFVLPPFLTLK 182

Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
332372881	367	unknown [Dendroctonus ponderosae]	0.351	0.414	0.527	1e-46
340713831	367	PREDICTED: hydroxyacid oxidase 1-like [B	0.369	0.435	0.550	4e-45
350409600	367	PREDICTED: hydroxyacid oxidase 1-like [B	0.369	0.435	0.550	4e-45
91083635	367	PREDICTED: similar to AGAP010885-PA [Tri	0.355	0.419	0.516	3e-44
383863683	366	PREDICTED: hydroxyacid oxidase 1-like [M	0.353	0.418	0.513	7e-44
380024965	367	PREDICTED: hydroxyacid oxidase 1-like [A	0.360	0.425	0.546	8e-44
66508573	367	PREDICTED: hydroxyacid oxidase 1-like [A	0.374	0.441	0.532	1e-43
195427008	365	GK20637 [Drosophila willistoni] gi|19415	0.348	0.413	0.497	2e-43
238789006	168	Thermosensitive gluconokinase [Yersinia	0.364	0.940	0.525	5e-43
384416774	167	putative gluconokinase [Yersinia pestis	0.360	0.934	0.531	1e-42

>gi|332372881|gb|AEE61582.1| unknown [Dendroctonus ponderosae]

 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/180 (52%), Positives = 122/180 (67%), Gaps = 28/180 (15%)

Query: 211 DFVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLV 242
           D VCV DFE+FA KVL                            +IRPR +RD+S R++ 
Sbjct: 3   DLVCVKDFEEFAYKVLPRNTLDYYRSGAGRQETLDNNRRAFSKYKIRPRCLRDVSTRSVS 62

Query: 243 TDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTP 302
           T ALG  + +P+G+SP+AMQ++AH EGE  NA A   +G I+ILSTI+T+SIEE+AE  P
Sbjct: 63  TTALGAKLLMPVGISPSAMQRMAHPEGECANARAAESMGTIFILSTIATSSIEEVAEAAP 122

Query: 303 QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNI 362
           +  KWFQLYIY DRE+T +LV+RAEKAG+KALVLTVDT +FG R AD+RNKF +P HL +
Sbjct: 123 KCIKWFQLYIYNDREVTINLVKRAEKAGFKALVLTVDTPMFGLRTADLRNKFKLPPHLKL 182

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713831|ref|XP_003395439.1| PREDICTED: hydroxyacid oxidase 1-like [Bombus terrestris]

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 92/167 (55%), Positives = 119/167 (71%), Gaps = 7/167 (4%)

Query: 203 TRAPPNYSDFVCVDDFEQFALKV-------LRIRPRVMRDLSKRTLVTDALGHPVQIPIG 255
           T   P+  D+      EQF+L++        RIRPR +R+++KR L T  LG  + +P+G
Sbjct: 17  THLTPSVRDYYNSGAGEQFSLQLNKDAFKRYRIRPRFLRNVAKRDLSTRILGEEISMPLG 76

Query: 256 VSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRD 315
           V+PAAMQ++AH EGE  NA A  E G IYILSTIST+SIEE+AE  P+  KWFQLYIY D
Sbjct: 77  VAPAAMQRMAHPEGECANARAAQEAGTIYILSTISTSSIEEVAEAAPKAIKWFQLYIYND 136

Query: 316 REITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNI 362
           R +T +LV RAE+AG+KALVLTVD  +FG R ADIRNKF++P+HL +
Sbjct: 137 RNVTLNLVSRAERAGFKALVLTVDAPLFGDRRADIRNKFSLPTHLRL 183

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409600|ref|XP_003488789.1| PREDICTED: hydroxyacid oxidase 1-like [Bombus impatiens]

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 92/167 (55%), Positives = 119/167 (71%), Gaps = 7/167 (4%)

Query: 203 TRAPPNYSDFVCVDDFEQFALKV-------LRIRPRVMRDLSKRTLVTDALGHPVQIPIG 255
           T   P+  D+      EQF+L++        RIRPR +R+++KR L T  LG  + +P+G
Sbjct: 17  THLTPSVRDYYNSGAGEQFSLQLNKDAFKRYRIRPRFLRNVAKRDLSTRILGEQISMPLG 76

Query: 256 VSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRD 315
           V+PAAMQ++AH EGE  NA A  E G IYILSTIST+SIEE+AE  P+  KWFQLYIY D
Sbjct: 77  VAPAAMQRMAHPEGECANARAAQEAGTIYILSTISTSSIEEVAEAAPKAIKWFQLYIYND 136

Query: 316 REITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNI 362
           R +T +LV RAE+AG+KALVLTVD  +FG R ADIRNKF++P+HL +
Sbjct: 137 RNVTLNLVSRAERAGFKALVLTVDAPLFGDRRADIRNKFSLPTHLRL 183

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083635|ref|XP_970519.1| PREDICTED: similar to AGAP010885-PA [Tribolium castaneum]

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 116/182 (63%), Gaps = 28/182 (15%)

Query: 213 VCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLVTD 244
           VCV DFE+ A  VL                            +IRPR +R+++KR L T 
Sbjct: 6   VCVKDFEKHAYNVLPRNALDYYRSGAGAEETLAHNRKAFSKYKIRPRCLRNVAKRDLSTT 65

Query: 245 ALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQT 304
            LG  VQIP+G+SP AMQ++AH EGE  NA A   +G I+ LSTI+T+SIEE+A+  P  
Sbjct: 66  VLGEKVQIPVGISPTAMQRMAHPEGECANARAAQAMGTIFTLSTIATSSIEEVAQAAPYG 125

Query: 305 TKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEE 364
           TKWFQLYIY DR +T+ LV+RAEKAG+KALVLTVDT +FG R ADIRNKF +P HL    
Sbjct: 126 TKWFQLYIYNDRNVTRRLVERAEKAGFKALVLTVDTPMFGLRLADIRNKFVLPPHLKFAN 185

Query: 365 LA 366
            A
Sbjct: 186 FA 187

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863683|ref|XP_003707309.1| PREDICTED: hydroxyacid oxidase 1-like [Megachile rotundata]

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 93/181 (51%), Positives = 118/181 (65%), Gaps = 28/181 (15%)

Query: 210 SDFVCVDDFE---------------------QFALKV-------LRIRPRVMRDLSKRTL 241
           S F+C+ DFE                     Q+ LK+        RI+PR +RD+S+R L
Sbjct: 2   SKFICIQDFENHAQNNLTPSIRDYYNSGAGDQYTLKLNTEAFKKYRIKPRFLRDVSQRDL 61

Query: 242 VTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKT 301
            T  LG  + +P+G++PAAMQ++AH EGE  NA A    G IYILSTIST+SIEE+AE  
Sbjct: 62  STTILGEKILMPLGIAPAAMQRMAHPEGECANARAAQAYGTIYILSTISTSSIEEVAEAA 121

Query: 302 PQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLN 361
           P   KWFQLYIY DR +T  LV+RAE+AG+KALVLTVD  +FG R ADIRNKF++PSHL 
Sbjct: 122 PNAIKWFQLYIYIDRNVTLDLVRRAERAGFKALVLTVDAPLFGDRRADIRNKFSLPSHLK 181

Query: 362 I 362
           +
Sbjct: 182 L 182

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024965|ref|XP_003696255.1| PREDICTED: hydroxyacid oxidase 1-like [Apis florea]

 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 89/163 (54%), Positives = 117/163 (71%), Gaps = 7/163 (4%)

Query: 207 PNYSDFVCVDDFEQFALKV-------LRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPA 259
           P+  D+      EQF+LK+        RIRPR +R++S+R L T  LG  + +P+G++PA
Sbjct: 21  PSVRDYYNSGAGEQFSLKLNTEAFKKYRIRPRFLRNVSRRDLSTTILGEKISMPLGIAPA 80

Query: 260 AMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREIT 319
           AMQ++AH EGE  NA A    G IYILSTIST+SIEE+AE  P   KWFQLYIY+DR +T
Sbjct: 81  AMQRMAHPEGECANARAAQGAGTIYILSTISTSSIEEVAEAAPNAIKWFQLYIYKDRNVT 140

Query: 320 KSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNI 362
            +LV RAE+AG+KA+VLTVD  +FG R ADIRNKF++P+HL +
Sbjct: 141 INLVGRAERAGFKAVVLTVDAPLFGDRRADIRNKFSLPNHLRL 183

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66508573|ref|XP_625149.1| PREDICTED: hydroxyacid oxidase 1-like [Apis mellifera]

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 116/169 (68%), Gaps = 7/169 (4%)

Query: 207 PNYSDFVCVDDFEQFALKV-------LRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPA 259
           P+  D+      EQF+LK+        RIRPR +R++SKR L T  LG  + +P+G++PA
Sbjct: 21  PSVRDYYNSGAGEQFSLKLNTEAFKKYRIRPRFLRNVSKRDLSTTILGEKISMPLGIAPA 80

Query: 260 AMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREIT 319
           AMQ++AH EGE  N  A    G IYILSTIST+SIEE+AE  P   KWFQLYIY+DR +T
Sbjct: 81  AMQRMAHPEGECANVRAAQGAGTIYILSTISTSSIEEVAEAAPNAIKWFQLYIYKDRNVT 140

Query: 320 KSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEK 368
            +LV RAE+AG+KA+VLTVD  +FG R ADIRNKF++P HL +     K
Sbjct: 141 INLVGRAERAGFKAIVLTVDAPLFGDRRADIRNKFSLPHHLRLGNFQGK 189

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195427008|ref|XP_002061571.1| GK20637 [Drosophila willistoni] gi|194157656|gb|EDW72557.1| GK20637 [Drosophila willistoni]

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/179 (49%), Positives = 117/179 (65%), Gaps = 28/179 (15%)

Query: 212 FVCVDDFEQFA----------------------------LKVLRIRPRVMRDLSKRTLVT 243
            VCV+DFEQ A                             + LR+RPR +RD+SK  +  
Sbjct: 3   LVCVEDFEQKAKEHLEKNALDYYKSGAGEQFTLSLNREAFRKLRLRPRCLRDVSKLDVGC 62

Query: 244 DALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQ 303
             LG  ++ P+G++P AMQK+AH +GEIGNA A G+ G I+ILST+STTS+E+LA   P 
Sbjct: 63  KILGEQMKWPLGIAPTAMQKMAHPDGEIGNARAAGKAGSIFILSTLSTTSLEDLAAGAPD 122

Query: 304 TTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNI 362
           T KWFQLYIY+DR IT+ LV+RAEKA +KALVLT+D  +FG R AD+RN F++PSHL +
Sbjct: 123 TVKWFQLYIYKDRSITEKLVRRAEKANFKALVLTIDAPIFGHRRADVRNNFSLPSHLTL 181

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|238789006|ref|ZP_04632796.1| Thermosensitive gluconokinase [Yersinia frederiksenii ATCC 33641] gi|238723033|gb|EEQ14683.1| Thermosensitive gluconokinase [Yersinia frederiksenii ATCC 33641]

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 84/160 (52%), Positives = 116/160 (72%), Gaps = 2/160 (1%)

Query: 41  FVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNIN 100
            ++MGVSGSGK+T+GE++A R+  KFIDGD LHP++NI KM +  PLNDEDR PWL  ++
Sbjct: 6   IIVMGVSGSGKTTVGEAVARRIHAKFIDGDDLHPRANIQKMGSGHPLNDEDRMPWLERLS 65

Query: 101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-RVVFIYLKAEFGVILSRLQKRAEHFMP 159
              + LN  N TG++VCSAL+R YRD +R  N  +VF+YLK  F VI+ RL+ R+ HFMP
Sbjct: 66  DAAYSLNHKNETGIIVCSALKRRYRDRLREGNPEMVFLYLKGSFDVIMGRLKARSGHFMP 125

Query: 160 ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAI 199
            DLL+SQF+ LEEP  L EPDV  V ++  ++ +V++  +
Sbjct: 126 TDLLKSQFEALEEPG-LEEPDVICVDIDADIDEVVARCVL 164

Source: Yersinia frederiksenii ATCC 33641

Species: Yersinia frederiksenii

Genus: Yersinia

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|384416774|ref|YP_005626136.1| putative gluconokinase [Yersinia pestis biovar Medievalis str. Harbin 35] gi|320017278|gb|ADW00850.1| putative gluconokinase [Yersinia pestis biovar Medievalis str. Harbin 35]

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 115/158 (72%), Gaps = 2/158 (1%)

Query: 41  FVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNIN 100
            ++MGVSGSGK+T+GE++A ++  KFIDGD LHP++NI KM + QPLND DR PWL  ++
Sbjct: 6   IIVMGVSGSGKTTVGEAVARQIHAKFIDGDDLHPRANIQKMGSGQPLNDADRMPWLERLS 65

Query: 101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMP 159
              + LN  N TG++VCSAL+R YRD +R  N+ +VF+YLK  F VI++RLQ R+ HFMP
Sbjct: 66  DAAYSLNHKNETGIIVCSALKRCYRDRLREGNQGMVFLYLKGNFDVIMARLQARSGHFMP 125

Query: 160 ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKS 197
           +DLL SQF  LEEP P  EPDV  V ++  ++ +V + 
Sbjct: 126 SDLLRSQFDALEEPGP-DEPDVICVDIDTDIDEVVRRC 162

Source: Yersinia pestis biovar Medievalis str. Harbin 35

Species: Yersinia pestis

Genus: Yersinia

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	433
FB|FBgn0061356	400	CG18003 [Drosophila melanogast	0.325	0.352	0.503	1.3e-38
UNIPROTKB|P46859	175	gntK [Escherichia coli K-12 (t	0.362	0.897	0.433	2e-31
UNIPROTKB|P39208	187	idnK "D-gluconate kinase, ther	0.357	0.828	0.445	5.4e-31
ZFIN|ZDB-GENE-040426-1239	378	hao2 "hydroxyacid oxidase 2 (l	0.355	0.407	0.396	9.9e-31
UNIPROTKB|E1BRR7	369	HAO1 "Uncharacterized protein"	0.323	0.379	0.421	2.6e-30
UNIPROTKB|I3LVF1	370	HAO1 "Uncharacterized protein"	0.316	0.370	0.423	4.2e-30
UNIPROTKB|E2QZ88	371	HAO1 "Uncharacterized protein"	0.339	0.396	0.398	2.3e-29
UNIPROTKB|Q9KV70	171	VC_0287 "Thermoresistant gluco	0.351	0.888	0.438	2.7e-29
TIGR_CMR|VC_0287	171	VC_0287 "thermoresistant gluco	0.351	0.888	0.438	2.7e-29
UNIPROTKB|F6XM23	370	HAO1 "Uncharacterized protein"	0.316	0.370	0.416	2.9e-29

FB|FBgn0061356 CG18003 [Drosophila melanogaster (taxid:7227)]

 Score = 390 (142.3 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
 Identities = 71/141 (50%), Positives = 97/141 (68%)

Query:   222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
             A + LR+RPR +RD+S+  + T   G  +Q P+G++P AMQK+AH +GE+GNA A G+ G
Sbjct:    75 AFRRLRLRPRCLRDVSRLDISTKIFGEQMQWPLGIAPTAMQKMAHPDGEVGNARAAGKAG 134

Query:   282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
              I+             A   P T KWFQLYIY+DR IT+ LV+RAEKA +KALVLT+D  
Sbjct:   135 SIFILSTLSTTSLEDLAAGAPDTIKWFQLYIYKDRTITEKLVRRAEKANFKALVLTIDAP 194

Query:   342 VFGTRYADIRNKFNMPSHLNI 362
             +FG R AD+RN F++PSHL++
Sbjct:   195 IFGHRRADVRNNFSLPSHLSL 215

GO:0008891 "glycolate oxidase activity" evidence=ISS

GO:0010181 "FMN binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|P46859 gntK [Escherichia coli K-12 (taxid:83333)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 69/159 (43%), Positives = 100/159 (62%)

Query:    40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI 99
             ++V+MGVSGSGKS +   +A +L   F+DGD LHP+ NI+KM++ +PLND+DR+PWL  +
Sbjct:    10 IYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQAL 69

Query:   100 NRIIHQLNVDNLTGVLVCSALXXXXXXXXXXXX-XVVFIYLKAEFGVILSRLQKRAEHFM 158
             N     +   N   ++VCSAL              + FIYLK +F VI SRL+ R  HF 
Sbjct:    70 NDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF 129

Query:   159 PADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKS 197
                +L +QF+TL+EP    E DV  V +++PLEG+V+ +
Sbjct:   130 KTQMLVTQFETLQEPGA-DETDVLVVDIDQPLEGVVAST 167

GO:0046316 "gluconokinase activity" evidence=IEA;IDA;IMP

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0046177 "D-gluconate catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P39208 idnK "D-gluconate kinase, thermosensitive" [Escherichia coli K-12 (taxid:83333)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 70/157 (44%), Positives = 94/157 (59%)

Query:    41 FVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNIN 100
             F++MGVSGSGK+ IG  +A  L  KFIDGD LHP  NIDKMS   PL+DEDR PWL  +N
Sbjct:     6 FILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLN 65

Query:   101 RIIHQLNVDNLTGVLVCSALXXXXXXXXXXXX-XVVFIYLKAEFGVILSRLQKRAEHFMP 159
                + L   N TG +VCS+L              V F++L  ++  IL+R+Q+RA HFMP
Sbjct:    66 DASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMP 125

Query:   160 ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSK 196
               LL+SQF+ LE P    E D+  + +N  +  +  +
Sbjct:   126 VALLKSQFEALERPQA-DEQDIVRIDINHDIANVTEQ 161

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0046183 "L-idonate catabolic process" evidence=IEA;IMP

GO:0046177 "D-gluconate catabolic process" evidence=IGI

GO:0019521 "D-gluconate metabolic process" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046316 "gluconokinase activity" evidence=IEA;IDA

ZFIN|ZDB-GENE-040426-1239 hao2 "hydroxyacid oxidase 2 (long chain)" [Danio rerio (taxid:7955)]

 Score = 308 (113.5 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
 Identities = 61/154 (39%), Positives = 84/154 (54%)

Query:   210 SDFVCVDDFEQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEG 269
             +D  C  D    A K +R+RPR++RD+S     T  LG  +  P+G++P A   LA  EG
Sbjct:    50 ADECCTRDDNLQAYKRIRLRPRILRDVSINDTRTSVLGREISFPVGIAPTAFHCLAWHEG 109

Query:   270 EIGNAAAVGEVGGIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA 329
             E+  A A   +   Y             A   P   +WFQLY+YRDR++++ +V R E  
Sbjct:   110 ELATARATEALNTCYIASTYATCSVEEIAAAAPNGYRWFQLYLYRDRKLSEQIVHRVEAL 169

Query:   330 GYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIE 363
             GYKALVLTVD    G R  DIRN+F +P HL ++
Sbjct:   170 GYKALVLTVDVPYTGKRRNDIRNQFKLPPHLKVK 203

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

UNIPROTKB|E1BRR7 HAO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 311 (114.5 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
 Identities = 59/140 (42%), Positives = 84/140 (60%)

Query:   227 RIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYXX 286
             ++ PRV+RD+S   L T  LG  + +P+ V+  AMQ++AH +GE   A A   +G     
Sbjct:    48 KLYPRVLRDVSVMDLSTSVLGQKISMPVCVAATAMQRMAHPDGETATAKACHAMGTGMML 107

Query:   287 XXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTR 346
                        AE  P   +W QLY+Y+DRE+TKSLV+RAE+AGYK + +TVDT   G R
Sbjct:   108 SSWATSSIEEVAEAAPGGLRWLQLYVYKDREVTKSLVKRAERAGYKGIFVTVDTPFLGRR 167

Query:   347 YADIRNKFNMPSHLNIEELA 366
               D+RNKF +P HL ++  +
Sbjct:   168 IDDVRNKFQLPPHLRLKNFS 187

GO:0001561 "fatty acid alpha-oxidation" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0008891 "glycolate oxidase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

UNIPROTKB|I3LVF1 HAO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 302 (111.4 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
 Identities = 58/137 (42%), Positives = 84/137 (61%)

Query:   227 RIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYXX 286
             ++ PR++R++++  L T  LG  V +PI V   AMQ +AHE+GE+    A   +G     
Sbjct:    48 KLYPRMLRNVAEVDLSTSVLGQRVSMPICVGATAMQCMAHEDGELATVRACRTLGTGMML 107

Query:   287 XXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTR 346
                        AE  P+  +W QLYIY+DRE+TK LVQRAE+ GYKA+ +TVDT   G R
Sbjct:   108 SSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKQLVQRAERMGYKAIFVTVDTPYLGNR 167

Query:   347 YADIRNKFNMPSHLNIE 363
             + D+RN+F +PS L ++
Sbjct:   168 FDDVRNRFKLPSQLRMK 184

GO:0010181 "FMN binding" evidence=IEA

GO:0008891 "glycolate oxidase activity" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0001561 "fatty acid alpha-oxidation" evidence=IEA

UNIPROTKB|E2QZ88 HAO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 296 (109.3 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
 Identities = 59/148 (39%), Positives = 87/148 (58%)

Query:   216 DDFEQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAA 275
             D+   F+ +  ++ PR++R++++  L T  LG  V +PI V   AMQ +AH +GE+    
Sbjct:    39 DNIAAFSSR-WKLYPRMLRNVAEIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVR 97

Query:   276 AVGEVGGIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALV 335
             A   +G                AE +P   +W QLYIY+DRE+TK LVQRAE+ GYKA+ 
Sbjct:    98 ACRSLGTGMMLSSWSTSSIEEVAEASPDALRWLQLYIYKDREVTKQLVQRAERKGYKAIF 157

Query:   336 LTVDTNVFGTRYADIRNKFNMPSHLNIE 363
             LTVDT   G R+ D+RN+F +P  L ++
Sbjct:   158 LTVDTPYLGNRFDDVRNRFKLPPQLRMK 185

GO:0010181 "FMN binding" evidence=IEA

GO:0008891 "glycolate oxidase activity" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0001561 "fatty acid alpha-oxidation" evidence=IEA

UNIPROTKB|Q9KV70 VC_0287 "Thermoresistant gluconokinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 68/155 (43%), Positives = 94/155 (60%)

Query:    42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR 101
             ++MGV   GKSTIGE LA + G KFIDGD LHP++NI KM++ QPLNDEDR+PWL  I  
Sbjct:     7 IVMGVCACGKSTIGELLAKQTGRKFIDGDDLHPRANIQKMASGQPLNDEDRKPWLERIRD 66

Query:   102 IIHQLNVDNLTGVLVCSALXXXXXXXXXXXXX-VVFIYLKAEFGVILSRLQKRAEHFMPA 160
               + L   N  GV+VCSAL              V F++L     +I+ R++ R  HFM  
Sbjct:    67 AAYSLESKNEHGVIVCSALKKQYRDQIREGNQNVTFLFLDGSKELIMERMRARQGHFMKE 126

Query:   161 DLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVS 195
             +++ SQF+TLE PD   EP    + ++  ++ +VS
Sbjct:   127 NMVNSQFETLERPDG--EPQTLIIPIDCSVQEVVS 159

GO:0005975 "carbohydrate metabolic process" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=ISS

TIGR_CMR|VC_0287 VC_0287 "thermoresistant gluconokinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 68/155 (43%), Positives = 94/155 (60%)

Query:    42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR 101
             ++MGV   GKSTIGE LA + G KFIDGD LHP++NI KM++ QPLNDEDR+PWL  I  
Sbjct:     7 IVMGVCACGKSTIGELLAKQTGRKFIDGDDLHPRANIQKMASGQPLNDEDRKPWLERIRD 66

Query:   102 IIHQLNVDNLTGVLVCSALXXXXXXXXXXXXX-VVFIYLKAEFGVILSRLQKRAEHFMPA 160
               + L   N  GV+VCSAL              V F++L     +I+ R++ R  HFM  
Sbjct:    67 AAYSLESKNEHGVIVCSALKKQYRDQIREGNQNVTFLFLDGSKELIMERMRARQGHFMKE 126

Query:   161 DLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVS 195
             +++ SQF+TLE PD   EP    + ++  ++ +VS
Sbjct:   127 NMVNSQFETLERPDG--EPQTLIIPIDCSVQEVVS 159

GO:0005975 "carbohydrate metabolic process" evidence=ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=ISS

UNIPROTKB|F6XM23 HAO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 295 (108.9 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
 Identities = 57/137 (41%), Positives = 82/137 (59%)

Query:   227 RIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYXX 286
             ++ PR++R++++  L T  LG  V +PI V   AMQ +AH +GE+    A   +G     
Sbjct:    48 KLYPRMLRNVAEIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACRSLGTGMML 107

Query:   287 XXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTR 346
                        AE +P   +W QLYIY+DRE+TK LVQRAE+ GYKA+ LTVDT   G R
Sbjct:   108 SSWSTSSIEEVAEASPDALRWLQLYIYKDREVTKQLVQRAERKGYKAIFLTVDTPYLGNR 167

Query:   347 YADIRNKFNMPSHLNIE 363
             + D+RN+F +P  L ++
Sbjct:   168 FDDVRNRFKLPPQLRMK 184

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.3.2	LOW CONFIDENCE prediction!
4th Layer	2.7.1.12	LOW CONFIDENCE prediction!
3rd Layer	5.3.3	LOW CONFIDENCE prediction!
3rd Layer	2.7.1	0.691
4th Layer	2.7.1.71	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	433
COG3265	161	COG3265, GntK, Gluconate kinase [Carbohydrate tran	5e-71
cd02021	150	cd02021, GntK, Gluconate kinase (GntK) catalyzes t	1e-65
TIGR01313	163	TIGR01313, therm_gnt_kin, carbohydrate kinase, the	5e-65
PRK11545	163	PRK11545, gntK, gluconate kinase 1; Provisional	1e-55
pfam01070	302	pfam01070, FMN_dh, FMN-dependent dehydrogenase	2e-51
cd02809	299	cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom	9e-50
PRK09825	176	PRK09825, idnK, D-gluconate kinase; Provisional	3e-49
cd04737	351	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN	5e-41
PLN02535	364	PLN02535, PLN02535, glycolate oxidase	8e-38
cd03332	383	cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO)	2e-37
cd02922	344	cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b	5e-37
COG1304	360	COG1304, idi, Isopentenyl diphosphate isomerase (B	2e-35
PLN02979	366	PLN02979, PLN02979, glycolate oxidase	1e-34
PLN02493	367	PLN02493, PLN02493, probable peroxisomal (S)-2-hyd	3e-33
TIGR02708	367	TIGR02708, L_lactate_ox, L-lactate oxidase	9e-27
cd04736	361	cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li	5e-24
PRK11197	381	PRK11197, lldD, L-lactate dehydrogenase; Provision	2e-23
pfam01070	302	pfam01070, FMN_dh, FMN-dependent dehydrogenase	2e-21
cd02809	299	cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom	7e-20
cd03332	383	cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO)	8e-17
cd04737	351	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN	5e-16
TIGR03966	385	TIGR03966, actino_HemFlav, heme/flavin dehydrogena	2e-15
pfam01202	158	pfam01202, SKI, Shikimate kinase	3e-15
PLN02535	364	PLN02535, PLN02535, glycolate oxidase	9e-15
PLN02493	367	PLN02493, PLN02493, probable peroxisomal (S)-2-hyd	1e-14
PLN02979	366	PLN02979, PLN02979, glycolate oxidase	2e-14
cd02922	344	cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b	1e-13
cd04736	361	cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li	3e-13
COG1304	360	COG1304, idi, Isopentenyl diphosphate isomerase (B	6e-12
PRK11197	381	PRK11197, lldD, L-lactate dehydrogenase; Provision	5e-11
TIGR02708	367	TIGR02708, L_lactate_ox, L-lactate oxidase	2e-10
pfam13671	143	pfam13671, AAA_33, AAA domain	1e-08
pfam13238	128	pfam13238, AAA_18, AAA domain	9e-08
pfam13207	114	pfam13207, AAA_17, AAA domain	2e-07
PRK00131	175	PRK00131, aroK, shikimate kinase; Reviewed	1e-06
COG0703	172	COG0703, AroK, Shikimate kinase [Amino acid transp	2e-06
cd00464	154	cd00464, SK, Shikimate kinase (SK) is the fifth en	3e-06
PRK13946	184	PRK13946, PRK13946, shikimate kinase; Provisional	2e-05
COG0529	197	COG0529, CysC, Adenylylsulfate kinase and related	7e-05
PLN02748	468	PLN02748, PLN02748, tRNA dimethylallyltransferase	1e-04
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	1e-04
PRK03731	171	PRK03731, aroL, shikimate kinase II; Reviewed	3e-04
TIGR03574	249	TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, a	4e-04
pfam13189	176	pfam13189, Cytidylate_kin2, Cytidylate kinase-like	6e-04
PRK05541	176	PRK05541, PRK05541, adenylylsulfate kinase; Provis	8e-04
cd02027	149	cd02027, APSK, Adenosine 5'-phosphosulfate kinase	0.001
PRK13947	171	PRK13947, PRK13947, shikimate kinase; Provisional	0.002
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	0.002
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	0.004
PLN02840	421	PLN02840, PLN02840, tRNA dimethylallyltransferase	0.004

>gnl|CDD|225804 COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]

 Score =  220 bits (563), Expect = 5e-71
 Identities = 82/152 (53%), Positives = 106/152 (69%), Gaps = 3/152 (1%)

Query: 44  MGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRII 103
           MGVSGSGKST+G +LA RLG KFIDGD LHP +NI+KMSA  PLND+DR PWL  +    
Sbjct: 1   MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAA 60

Query: 104 HQLNVDNLTGVLVCSALRRNYRDIIRNNN-RVVFIYLKAEFGVILSRLQKRAEHFMPADL 162
             L   N   V+ CSAL+R+YRD++R  N  + F+YL  +F +IL R++ R  HFMPA L
Sbjct: 61  ASLAQKNKHVVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASL 120

Query: 163 LESQFQTLEEPDPLVEPDVRTVSVNEPLEGIV 194
           L+SQF TLEEP    + DV T+ +++P E +V
Sbjct: 121 LDSQFATLEEPGA--DEDVLTIDIDQPPEEVV 150

Length = 161

>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

 Score =  206 bits (527), Expect = 1e-65
 Identities = 80/151 (52%), Positives = 100/151 (66%), Gaps = 5/151 (3%)

Query: 40  VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI 99
           + V+MGVSGSGKST+G++LA RLG  FIDGD LHP +NI KM+A  PLNDEDR PWL  +
Sbjct: 1   IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQAL 60

Query: 100 NR-IIHQLNVDNLTGVLVCSALRRNYRDIIR---NNNRVVFIYLKAEFGVILSRLQKRAE 155
              ++ +L       V+ CSAL+R YRDI+R    N RV F++L     V+  RL  R  
Sbjct: 61  TDALLAKLASAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKG 120

Query: 156 HFMPADLLESQFQTLEEPDPLVEPDVRTVSV 186
           HFMPADLL+SQF+TLE P    E DV  + V
Sbjct: 121 HFMPADLLDSQFETLEPPGE-DEEDVIVIDV 150

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. Length = 150

>gnl|CDD|233355 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant glucokinase family

 Score =  205 bits (523), Expect = 5e-65
 Identities = 85/157 (54%), Positives = 107/157 (68%), Gaps = 2/157 (1%)

Query: 41  FVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNIN 100
           FV+MGV+GSGKSTI  +LA RLG KFI+GD LHP +NI+KMSA  PLND+DR PWL N+N
Sbjct: 1   FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLN 60

Query: 101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRN-NNRVVFIYLKAEFGVILSRLQKRAEHFMP 159
                    N  G++ CSAL+R+YRDI+R     + FIYL  +  VIL R++ R  HFM 
Sbjct: 61  DASTAAAAKNKVGIITCSALKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFMK 120

Query: 160 ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSK 196
           AD+LESQF  LEEP    E DV  V +++PLEG+   
Sbjct: 121 ADMLESQFAALEEPL-ADETDVLRVDIDQPLEGVEED 156

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. Length = 163

>gnl|CDD|236926 PRK11545, gntK, gluconate kinase 1; Provisional

 Score =  181 bits (461), Expect = 1e-55
 Identities = 73/155 (47%), Positives = 106/155 (68%), Gaps = 2/155 (1%)

Query: 44  MGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRII 103
           MGVSGSGKS +   +A +L   F+DGD LHP+ NI+KM++ +PLND+DR+PWL  +N   
Sbjct: 1   MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAA 60

Query: 104 HQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADL 162
             +   N   ++VCSAL+++YRD++R  N  + FIYLK +F VI SRL+ R  HF    +
Sbjct: 61  FAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQM 120

Query: 163 LESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKS 197
           L +QF+TL+EP    E DV  V +++PLEG+V+ +
Sbjct: 121 LVTQFETLQEPGA-DETDVLVVDIDQPLEGVVAST 154

Length = 163

>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase

 Score =  174 bits (445), Expect = 2e-51
 Identities = 66/131 (50%), Positives = 89/131 (67%), Gaps = 1/131 (0%)

Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A   +R+RPRV+RD+S R L T  LG  + +P G++P  MQ LAH +GE+  A A    G
Sbjct: 29  AFDRIRLRPRVLRDVSDRDLSTTLLGQRLSLPFGIAPTGMQGLAHPDGELALARAAAAAG 88

Query: 282 GIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
             ++LST+S+TS+EE+A        WFQLY+ +DRE+T+ L++RAE AGYKALVLTVDT 
Sbjct: 89  IPFVLSTVSSTSLEEVAAAAGG-PLWFQLYVPKDRELTEDLLERAEAAGYKALVLTVDTP 147

Query: 342 VFGTRYADIRN 352
           V G R  D+R 
Sbjct: 148 VLGNRERDLRT 158

Length = 302

>gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

 Score =  170 bits (433), Expect = 9e-50
 Identities = 70/141 (49%), Positives = 94/141 (66%), Gaps = 6/141 (4%)

Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A   +R+RPRV+RD+SKR   T  LG  + +P G++P  +Q LAH +GE+  A A    G
Sbjct: 35  AFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAG 94

Query: 282 GIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
             + LST+STTS+EE+A   P   +WFQLY+ RDREIT+ L++RAE AGYKALVLTVDT 
Sbjct: 95  IPFTLSTVSTTSLEEVAAAAP-GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTP 153

Query: 342 VFGTRY-----ADIRNKFNMP 357
           V G R      A +R+++  P
Sbjct: 154 VLGRRLTWDDLAWLRSQWKGP 174

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. Length = 299

>gnl|CDD|182097 PRK09825, idnK, D-gluconate kinase; Provisional

 Score =  165 bits (418), Expect = 3e-49
 Identities = 77/157 (49%), Positives = 103/157 (65%), Gaps = 2/157 (1%)

Query: 41  FVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNIN 100
           +++MGVSGSGKS IG  +A     KFIDGD LHP  NIDKMS   PL DEDR PWL  +N
Sbjct: 6   YILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLN 65

Query: 101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-RVVFIYLKAEFGVILSRLQKRAEHFMP 159
              + L   N TG +VCS+L++ YRDI+R ++  V F++L  ++  IL+R+Q+RA HFMP
Sbjct: 66  DASYSLYKKNETGFIVCSSLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFMP 125

Query: 160 ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSK 196
            DLL+SQF  LE P    E D+  + VN  +E +  +
Sbjct: 126 PDLLQSQFDALERPCA-DEHDIARIDVNHDIENVTEQ 161

Length = 176

>gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain

 Score =  148 bits (376), Expect = 5e-41
 Identities = 62/170 (36%), Positives = 99/170 (58%), Gaps = 1/170 (0%)

Query: 228 IRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILS 287
           I PRV++ +      T+ LG  ++ PI ++P A   LAH  GE+  A  + EVG ++ +S
Sbjct: 49  IVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSIS 108

Query: 288 TISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRY 347
           T S TS+EE+A+ +    KWFQLY+ +D    +SL+ RA+ AG KA++LT D  V G R 
Sbjct: 109 TYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNRE 168

Query: 348 ADIRNKFNMPSHL-NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEK 396
           ADIRNKF  P  + N+   +E T +     ++Y    ++++ + ++   K
Sbjct: 169 ADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAK 218

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 351

>gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase

 Score =  140 bits (354), Expect = 8e-38
 Identities = 64/144 (44%), Positives = 87/144 (60%), Gaps = 1/144 (0%)

Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A + +  RPRV+ D+SK  + T  LG+ +  PI ++P AM KLAH EGEI  A A     
Sbjct: 43  AFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACN 102

Query: 282 GIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
            I +LS +++ ++EE+A       ++ QLY+Y+ R+I   LVQRAEK GYKA+VLT D  
Sbjct: 103 TIMVLSFMASCTVEEVASSC-NAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVP 161

Query: 342 VFGTRYADIRNKFNMPSHLNIEEL 365
             G R ADI+NK   P   N E L
Sbjct: 162 RLGRREADIKNKMISPQLKNFEGL 185

Length = 364

>gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain

 Score =  140 bits (354), Expect = 2e-37
 Identities = 53/134 (39%), Positives = 84/134 (62%)

Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A    RI PR++R +++R L  +  G  +  P+ ++P  +Q+L H + E+  A A  E+G
Sbjct: 56  AFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELG 115

Query: 282 GIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
             YILST S++SIE++A       +WFQLY  +D ++T+SL++RAEKAGY+ LV+T+DT 
Sbjct: 116 VPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTW 175

Query: 342 VFGTRYADIRNKFN 355
             G R  D+   + 
Sbjct: 176 SLGWRPRDLDLGYL 189

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. Length = 383

>gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain

 Score =  137 bits (348), Expect = 5e-37
 Identities = 72/208 (34%), Positives = 107/208 (51%), Gaps = 25/208 (12%)

Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A + +R RPRV+RD+ K    T  LGH V +P  +SPAA+ KLAH +GE+  A A G+ G
Sbjct: 35  AFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHG 94

Query: 282 GIYILSTISTTSIEELAE-KTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDT 340
            + ++ST ++ S+EE+ + + P    +FQLY+ +DR  T+ L++RAEK G KA+ LTVD 
Sbjct: 95  ILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDA 154

Query: 341 NVFGTRYADIRNKFN--MPSHLNIEELAEKTPQTTKWFQLYIYRD---------REITKS 389
            V G R  D R K    +      ++   K     +    +I            R+ TK 
Sbjct: 155 PVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTK- 213

Query: 390 L------VQRAE------KAGYKALVLT 405
           L      VQ  E      + G   +VL+
Sbjct: 214 LPIVLKGVQTVEDAVLAAEYGVDGIVLS 241

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. Length = 344

>gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

 Score =  133 bits (338), Expect = 2e-35
 Identities = 63/157 (40%), Positives = 83/157 (52%), Gaps = 13/157 (8%)

Query: 215 VDDFEQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNA 274
            + FE  AL     RPRV+ ++    L T  LG  +  PI ++P     LAH EGE+ NA
Sbjct: 33  REAFEDIAL-----RPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAHPEGEVINA 87

Query: 275 AAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKAL 334
                 G  +ILST+ +  IEE+A   P     FQLY  +DRE   +LV RA  AG K L
Sbjct: 88  KLAAAAGEPFILSTVGSQRIEEVAAAPP-----FQLYFSKDREFAPNLVDRAANAGAKQL 142

Query: 335 VLTVDTNVFGTRYADIRNKFNMPS---HLNIEELAEK 368
           VLTVD+ V G R  D  N  + P+   HLN+ + A +
Sbjct: 143 VLTVDSPVGGERERDAVNGISAPALAIHLNVLQEATQ 179

Length = 360

>gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase

 Score =  131 bits (331), Expect = 1e-34
 Identities = 61/137 (44%), Positives = 93/137 (67%), Gaps = 1/137 (0%)

Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILST 288
           RPR++ D+SK  + T  LG  + +PI V+P AMQK+AH +GE   A A    G I  LS+
Sbjct: 47  RPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSS 106

Query: 289 ISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYA 348
            +T+S+EE+A   P   ++FQLY+Y++R + + LV+RAE+AG+KA+ LTVDT   G R +
Sbjct: 107 WATSSVEEVASTGP-GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRES 165

Query: 349 DIRNKFNMPSHLNIEEL 365
           DI+N+F +P +L ++  
Sbjct: 166 DIKNRFTLPPNLTLKNF 182

Length = 366

>gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase

 Score =  128 bits (322), Expect = 3e-33
 Identities = 62/144 (43%), Positives = 95/144 (65%), Gaps = 1/144 (0%)

Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A   +  RPR++ D+SK  + T  LG  + +PI V+P AMQK+AH +GE   A A    G
Sbjct: 41  AFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAG 100

Query: 282 GIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
            I  LS+ +T+S+EE+A   P   ++FQLY+Y++R + + LV+RAE+AG+KA+ LTVDT 
Sbjct: 101 TIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTP 159

Query: 342 VFGTRYADIRNKFNMPSHLNIEEL 365
             G R +DI+N+F +P +L ++  
Sbjct: 160 RLGRRESDIKNRFTLPPNLTLKNF 183

Length = 367

>gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase

 Score =  110 bits (275), Expect = 9e-27
 Identities = 50/137 (36%), Positives = 77/137 (56%)

Query: 228 IRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILS 287
           I P +++D+   +   + LGH ++ P  ++P A  KLA+E+GE+  A  V E G IY  S
Sbjct: 57  IVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAAHKLANEQGEVATARGVSEFGSIYTTS 116

Query: 288 TISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRY 347
           + ST  + E++E    T  WFQ Y+ +D  I + ++ R +  G KA+VLT D  V G R 
Sbjct: 117 SYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNRE 176

Query: 348 ADIRNKFNMPSHLNIEE 364
            D+RN F  P  + I +
Sbjct: 177 VDVRNGFVFPVGMPIVQ 193

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence [Energy metabolism, Other]. Length = 367

>gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain

 Score =  102 bits (255), Expect = 5e-24
 Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 2/136 (1%)

Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A    R  PR + D+SKR +     G     P+ ++P  +       G++  A A  + G
Sbjct: 35  AFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAG 94

Query: 282 GIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
             ++LST S  SIE++A +      WFQLY+   RE+ + LV+RA  AGY  LVLT D  
Sbjct: 95  IPFVLSTASNMSIEDVARQA-DGDLWFQLYVVH-RELAELLVKRALAAGYTTLVLTTDVA 152

Query: 342 VFGTRYADIRNKFNMP 357
           V G R  D+RN F +P
Sbjct: 153 VNGYRERDLRNGFAIP 168

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 361

>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional

 Score =  100 bits (251), Expect = 2e-23
 Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 6/138 (4%)

Query: 215 VDDFEQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNA 274
           V+D    AL     R RV++D+S  +L T   G  + +P+ ++P  +  +    GE+  A
Sbjct: 39  VEDLADIAL-----RQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLTGMYARRGEVQAA 93

Query: 275 AAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKAL 334
            A    G  + LST+S   IEE+A    +   WFQLY+ RDR   ++ ++RA+ AG   L
Sbjct: 94  RAADAKGIPFTLSTVSVCPIEEVAPAI-KRPMWFQLYVLRDRGFMRNALERAKAAGCSTL 152

Query: 335 VLTVDTNVFGTRYADIRN 352
           V TVD  V G RY D  +
Sbjct: 153 VFTVDMPVPGARYRDAHS 170

Length = 381

>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase

 Score = 94.1 bits (235), Expect = 2e-21
 Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 1/59 (1%)

Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           +EE+A        WFQLY+ +DRE+T+ L++RAE AGYKALVLTVDT V G R  D+R 
Sbjct: 101 LEEVAAAAGGP-LWFQLYVPKDRELTEDLLERAEAAGYKALVLTVDTPVLGNRERDLRT 158

Length = 302

>gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

 Score = 89.0 bits (222), Expect = 7e-20
 Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 6/69 (8%)

Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRY-----A 416
           +EE+A   P   +WFQLY+ RDREIT+ L++RAE AGYKALVLTVDT V G R      A
Sbjct: 107 LEEVAAAAP-GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLA 165

Query: 417 DIRNKFNMP 425
            +R+++  P
Sbjct: 166 WLRSQWKGP 174

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. Length = 299

>gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain

 Score = 81.2 bits (201), Expect = 8e-17
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNK 421
           IE++A       +WFQLY  +D ++T+SL++RAEKAGY+ LV+T+DT   G R  D+   
Sbjct: 128 IEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLG 187

Query: 422 FN 423
           + 
Sbjct: 188 YL 189

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. Length = 383

>gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain

 Score = 78.6 bits (194), Expect = 5e-16
 Identities = 33/68 (48%), Positives = 46/68 (67%)

Query: 358 SHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYAD 417
           S+ ++EE+A+ +    KWFQLY+ +D    +SL+ RA+ AG KA++LT D  V G R AD
Sbjct: 111 SNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREAD 170

Query: 418 IRNKFNMP 425
           IRNKF  P
Sbjct: 171 IRNKFQFP 178

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 351

>gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 14/179 (7%)

Query: 226 LRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYI 285
           L  RP V     KR L T  +G  +  P+ +SP  +Q + H +GE+  A A    G    
Sbjct: 47  LGFRPHVAGAPPKRELSTTVMGQEISFPVLISPTGVQAV-HPDGEVAVARAAAARGTAMG 105

Query: 286 LSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGT 345
           LS+ ++  +EE+    P+T  +FQ+Y    R+   + ++RA  AG K L+LT+D   F +
Sbjct: 106 LSSFASKPVEEVVAANPKT--FFQIYWVGSRDDILARLERARAAGAKGLILTLDW-SFAS 162

Query: 346 RYADIRNKFNMPSHLNIEELAEKTPQTT---KWFQLYIYRDREI----TKSLVQRAEKA 397
           R  D  +   +P  +++  +    P+      W   Y+ R   I      +L  R E  
Sbjct: 163 R-RDWGSPE-IPEKIDLRTMLRFAPEVLVRPGWLLRYL-RSGRIPDLTVPNLALRGETP 218

Members of this protein family possess an N-terminal heme-binding domain and C-terminal flavodehydrogenase domain, and share homology to yeast flavocytochrome b2, to E. coli L-lactate dehydrogenase [cytochrome], to (S)-mandelate dehydrogenase, etc. This enzyme appears only in the context of the mycofactocin system. Interestingly, it is absent from the four species detected so far with mycofactocin but without an F420 biosynthesis system. Length = 385

>gnl|CDD|216360 pfam01202, SKI, Shikimate kinase

 Score = 72.6 bits (179), Expect = 3e-15
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 48  GSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDED----RRPWLNNINRII 103
           G+GKSTIG  LA  LG+ FID D          MS  +   +E     RR     +  ++
Sbjct: 2   GAGKSTIGRLLAKALGLPFIDTDQEI--EKRTGMSIAEIFEEEGEEGFRRLESEVLKELL 59

Query: 104 HQLNVDNLTGVLVC---SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAE 155
            + N      V+     + L    R +++ N  V  +YL A+  V+L RL+    
Sbjct: 60  AEHNA-----VIATGGGAVLSEENRALLKENGIV--VYLDADPEVLLERLKADKT 107

Length = 158

>gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase

 Score = 74.9 bits (184), Expect = 9e-15
 Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNK 421
           +EE+A       ++ QLY+Y+ R+I   LVQRAEK GYKA+VLT D    G R ADI+NK
Sbjct: 115 VEEVASSC-NAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNK 173

Query: 422 FNMP 425
              P
Sbjct: 174 MISP 177

Length = 364

>gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase

 Score = 74.4 bits (182), Expect = 1e-14
 Identities = 32/68 (47%), Positives = 51/68 (75%), Gaps = 1/68 (1%)

Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           ++EE+A   P   ++FQLY+Y++R + + LV+RAE+AG+KA+ LTVDT   G R +DI+N
Sbjct: 112 SVEEVASTGP-GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKN 170

Query: 421 KFNMPSHL 428
           +F +P +L
Sbjct: 171 RFTLPPNL 178

Length = 367

>gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase

 Score = 74.0 bits (181), Expect = 2e-14
 Identities = 32/68 (47%), Positives = 51/68 (75%), Gaps = 1/68 (1%)

Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           ++EE+A   P   ++FQLY+Y++R + + LV+RAE+AG+KA+ LTVDT   G R +DI+N
Sbjct: 111 SVEEVASTGP-GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKN 169

Query: 421 KFNMPSHL 428
           +F +P +L
Sbjct: 170 RFTLPPNL 177

Length = 366

>gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 358 SHLNIEELAE-KTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYA 416
           +  ++EE+ + + P    +FQLY+ +DR  T+ L++RAEK G KA+ LTVD  V G R  
Sbjct: 103 ASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRER 162

Query: 417 DIRNKF 422
           D R K 
Sbjct: 163 DERLKA 168

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. Length = 344

>gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain

 Score = 70.2 bits (172), Expect = 3e-13
 Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 8/79 (10%)

Query: 353 KFNMP------SHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTV 406
           K  +P      S+++IE++A +      WFQLY+   RE+ + LV+RA  AGY  LVLT 
Sbjct: 92  KAGIPFVLSTASNMSIEDVARQA-DGDLWFQLYVVH-RELAELLVKRALAAGYTTLVLTT 149

Query: 407 DTNVFGTRYADIRNKFNMP 425
           D  V G R  D+RN F +P
Sbjct: 150 DVAVNGYRERDLRNGFAIP 168

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 361

>gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 31/64 (48%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNK 421
           IEE+A   P     FQLY  +DRE   +LV RA  AG K LVLTVD+ V G R  D  N 
Sbjct: 107 IEEVAAAPP-----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNG 161

Query: 422 FNMP 425
            + P
Sbjct: 162 ISAP 165

Length = 360

>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           IEE+A    +   WFQLY+ RDR   ++ ++RA+ AG   LV TVD  V G RY D  +
Sbjct: 113 IEEVAPAI-KRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHS 170

Length = 381

>gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 26/68 (38%), Positives = 38/68 (55%)

Query: 358 SHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYAD 417
           S  ++ E++E    T  WFQ Y+ +D  I + ++ R +  G KA+VLT D  V G R  D
Sbjct: 119 STADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVD 178

Query: 418 IRNKFNMP 425
           +RN F  P
Sbjct: 179 VRNGFVFP 186

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence [Energy metabolism, Other]. Length = 367

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 19/148 (12%)

Query: 40  VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI 99
           + +++G+ GSGKST    L   LG   +  D L       ++    P +          +
Sbjct: 1   LILMVGLPGSGKSTFARRLLRELGAVVLSSDTL-----RKRLRGDGPPDISYYARASGRV 55

Query: 100 NRIIHQLNVDNLTG---VLVC-----SALRRNYRDIIRNNN-RVVFIYLKAEFGVILSRL 150
            + + +L  + L     V+V         R    D+ R     V  +YL+A   V+  R 
Sbjct: 56  YQRLLELAREALRAGRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLRERN 115

Query: 151 QKRAEH-----FMPADLLESQFQTLEEP 173
            +R         +P  +L+      E P
Sbjct: 116 AQRERSGGDPSDVPEAVLDRMLARFEPP 143

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|222000 pfam13238, AAA_18, AAA domain

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFID-GDHLHPQSNIDKMSAKQPLNDEDRRPWLNNIN 100
           +I G  GSGK+T+ + LA RLG    D          +D+    +     D       ++
Sbjct: 2   LITGTPGSGKTTLAKELAERLGDVLRDLAKENGLVLELDEEITDE-SKRLDEDKLAKLLD 60

Query: 101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR 153
           ++   +        ++           +     +VF+ L+A+   +L RL+KR
Sbjct: 61  KLEKIIEELAEGENVIIDGHLAEL--ELERFKDLVFVVLRADPEELLERLKKR 111

Length = 128

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 40  VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI 99
           + +I G  GSGKST+ + LA +LG+  I  D L       +      L+D +      ++
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLL------REEGLAELDDGELDDIDIDL 54

Query: 100 NRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAE 155
             +   L+       ++     R     +R     + ++L         RL KR  
Sbjct: 55  ELLEEILDELAKQEWVIDGV--RESTLELRLEEADLVVFLDLPLPACRFRLLKRRL 108

Length = 114

>gnl|CDD|234654 PRK00131, aroK, shikimate kinase; Reviewed

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 20/31 (64%), Positives = 23/31 (74%)

Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHL 72
          V++G  G+GKSTIG  LA RLG  FID DHL
Sbjct: 8  VLIGFMGAGKSTIGRLLAKRLGYDFIDTDHL 38

Length = 175

>gnl|CDD|223775 COG0703, AroK, Shikimate kinase [Amino acid transport and metabolism]

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 16/119 (13%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK---MSAKQPLNDEDRRPWLNN 98
           V++G  G+GKSTIG +LA  L + FID D       I+K   MS  + + +E+       
Sbjct: 6   VLIGFMGAGKSTIGRALAKALNLPFIDTDQE-----IEKRTGMSIAE-IFEEEGEEGFRR 59

Query: 99  I-NRIIHQLNVDNLTGVLV---CSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR 153
           +   ++ +L  ++   V+     + L    R++++    V  +YL A F  +  RLQ+ 
Sbjct: 60  LETEVLKELLEEDNA-VIATGGGAVLSEENRNLLKKRGIV--VYLDAPFETLYERLQRD 115

Length = 172

>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHL 72
          V++G+ G+GK+T+G  LA  LG+ F+D D L
Sbjct: 3  VLIGMMGAGKTTVGRLLAKALGLPFVDLDEL 33

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. Length = 154

>gnl|CDD|184411 PRK13946, PRK13946, shikimate kinase; Provisional

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 16/30 (53%), Positives = 23/30 (76%)

Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDH 71
          V++G+ G+GKST+G  LAT LG+ F+D D 
Sbjct: 14 VLVGLMGAGKSTVGRRLATMLGLPFLDADT 43

Length = 184

>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 37/174 (21%)

Query: 35  GSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSNIDKMSAKQPLND 89
           G    V    G+SGSGKSTI  +L  +L      V  +DGD++        ++     + 
Sbjct: 20  GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR-----HGLNRDLGFSR 74

Query: 90  EDRRPWLNNINRIIH--QLNVDNLTGVLVCSALRRNYRDIIRNNNRVVF-------IYLK 140
           EDR     NI R+    +L  D   G++V  A    YR+  R   R +        +Y+ 
Sbjct: 75  EDRI---ENIRRVAEVAKLLADA--GLIVIVAFISPYRE-DRQMARELLGEGEFIEVYVD 128

Query: 141 AEFGVILSR----LQKRA-----EHFMPADLLESQFQTLEEPDPLVEPDVRTVS 185
               V   R    L K+A     ++F   D   S ++  E P+  ++ D  +V 
Sbjct: 129 TPLEVCERRDPKGLYKKARAGEIKNFTGID---SPYEAPENPELHLDTDRNSVE 179

Length = 197

>gnl|CDD|215399 PLN02748, PLN02748, tRNA dimethylallyltransferase

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 9/75 (12%)

Query: 29 LSPS---GEGSP------STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNID 79
          L+PS   GE         + V V+MG +GSGKS +   LA+   V+ I+ D +   S +D
Sbjct: 4  LNPSPGAGEEGSPKQKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLD 63

Query: 80 KMSAKQPLNDEDRRP 94
           ++ K PL+++   P
Sbjct: 64 VLTNKVPLHEQKGVP 78

Length = 468

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 16/85 (18%)

Query: 41  FVIMGVSGSGKSTIGESLATRLGVKFID-GDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI 99
            +I+G  G+GKST+ + LA +LG+  +D GD L                  +R      I
Sbjct: 3   ILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI-------------AERTELGEEI 49

Query: 100 NRII--HQLNVDNLTGVLVCSALRR 122
            + I   +L  D +   LV   L  
Sbjct: 50  KKYIDKGELVPDEIVNGLVKERLDE 74

Length = 178

>gnl|CDD|235153 PRK03731, aroL, shikimate kinase II; Reviewed

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDH 71
           +F++ G  G GK+T+G +LA  LG +F+D D 
Sbjct: 4  PLFLV-GARGCGKTTVGMALAQALGYRFVDTDQ 35

Length = 171

>gnl|CDD|132613 TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, archaeal

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 19/170 (11%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR 101
           ++ G+ G GKST  + LA +L  K ID   L      D +    P+  E    ++ +   
Sbjct: 3   ILTGLPGVGKSTFSKELAKKLSEKNIDVIIL----GTDLIRESFPVWKEKYEEFIRDSTL 58

Query: 102 IIHQLNVDNLTGVLV-----CSALRRNYRDIIRNNNRV-VFIYLKAEFGVILSRLQKRAE 155
            + +  + N   V+V      +++RR+  +I +  N+  + IYLKA    +L R  +R E
Sbjct: 59  YLIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE 118

Query: 156 HFMPADLLESQFQTLEEPDP--------LVEPDVRTVSVNEPLEGIVSKS 197
             +P ++++  ++  +EP          L     + +  NE LE I+  S
Sbjct: 119 K-IPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTKKIDYNEILEEILEIS 167

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity [Protein synthesis, tRNA aminoacylation]. Length = 249

>gnl|CDD|221968 pfam13189, Cytidylate_kin2, Cytidylate kinase-like family

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 35/132 (26%)

Query: 48  GSGKSTIGESLATRLGVKFIDGDHLHP---QSNIDKMSAKQPLNDEDR-RPWLNNIN--- 100
           GSG   IG+ LA +LG+ + D + L     +S I +   ++   DE      L +I    
Sbjct: 9   GSGGREIGKKLAEKLGIPYYDREILDEAAKESGISEEEFER--YDEKAPNSLLYSIAAGF 66

Query: 101 -----------------RIIHQLNVDNLTGVLV--CSALRRNYRDIIRNNNRVVFIYLKA 141
                            ++I +L  +  + V+V  C+    +Y  I+R+   V+ +++ A
Sbjct: 67  YRGEDISSDDKLFKAQSKVIREL-AEKGSCVIVGRCA----DY--ILRDRPNVLSVFIYA 119

Query: 142 EFGVILSRLQKR 153
           +    + R+ +R
Sbjct: 120 DLEDRVERVMER 131

This family includes enzymes related to cytidylate kinase. Length = 176

>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 18/119 (15%)

Query: 43  IMGVSGSGKSTIGESLATRLGVK-----FIDGDHLHP---QSNIDKMSAKQPLNDEDRRP 94
           I G++GSGK+TI ++L  RL +K     ++DGD L         DK         + R  
Sbjct: 12  ITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDK---------QSRIE 62

Query: 95  WLNNINRIIHQLNVDNLTGVLVC-SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQK 152
                 ++   L    +  ++   S     Y    ++      +YLK +   ++ R QK
Sbjct: 63  MALKRAKLAKFLADQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQK 121

Length = 176

>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 20/97 (20%)

Query: 45  GVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSNI-DKMSAKQPLNDEDRRPWLNN 98
           G+SGSGKSTI  +L  +L      V  +DGD      N+   ++     + EDR     N
Sbjct: 6   GLSGSGKSTIARALEEKLFQRGRPVYVLDGD------NVRHGLNKDLGFSREDR---EEN 56

Query: 99  INRIIH--QLNVDNLTGVLVCSALRRNYRDIIRNNNR 133
           I RI    +L  D   G++V +A    YR+  R   R
Sbjct: 57  IRRIAEVAKLLADA--GLIVIAAFISPYRE-DREAAR 90

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate. Length = 149

>gnl|CDD|184412 PRK13947, PRK13947, shikimate kinase; Provisional

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 18/146 (12%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLN--DEDRRPWLNNI 99
           V++G  G+GK+T+G+ +AT L   FID D       I+KM+        ++D        
Sbjct: 5   VLIGFMGTGKTTVGKRVATTLSFGFIDTDKE-----IEKMTGMTVAEIFEKDGEVRF--- 56

Query: 100 NRIIHQLNVDNLTGV--LVCS---ALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA 154
            R   +L V  L  +  LV +    +  N  ++++     V I LKA   VIL R+ K+ 
Sbjct: 57  -RSEEKLLVKKLARLKNLVIATGGGVVLNPENVVQLRKNGVVICLKARPEVILRRVGKKK 115

Query: 155 EH--FMPADLLESQFQTLEEPDPLVE 178
                M  D  E   + L+E +P  +
Sbjct: 116 SRPLLMVGDPEERIKELLKEREPFYD 141

Length = 171

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 12/51 (23%)

Query: 40 VFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSNIDKMSAKQ 85
          +FVIMG+SGSGKST+   +  RL     G   IDG       +I  MS K+
Sbjct: 52 IFVIMGLSGSGKSTLLRCI-NRLIEPTSGKVLIDGQ------DIAAMSRKE 95

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 6/51 (11%)

Query: 32 SGEGSPSTVFVIMGVSGSGKSTIGESLA---TRLGVK---FIDGDHLHPQS 76
          SG+  P  +  IMG SG+GKST+  +LA   T LGV     I+G  L  +S
Sbjct: 29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRS 79

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|215451 PLN02840, PLN02840, tRNA dimethylallyltransferase

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 26 TTTLSPSGEGSPS--TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSA 83
          TT LS SG        V VI G +G+GKS +   LA RL  + I  D +     +D  SA
Sbjct: 7  TTALSGSGASKTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSA 66

Query: 84 KQPLND 89
          K  L++
Sbjct: 67 KPSLSE 72

Length = 421

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	433
KOG0538|consensus	363		100.0
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	100.0
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	100.0
PLN02535	364	glycolate oxidase	100.0
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	100.0
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	100.0
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	100.0
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	100.0
PLN02979	366	glycolate oxidase	100.0
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	100.0
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	100.0
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.93
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	99.92
KOG3354|consensus	191		99.91
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	99.87
KOG0538|consensus	363		99.85
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.85
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	99.8
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	99.8
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.79
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	99.78
PRK09825	176	idnK D-gluconate kinase; Provisional	99.78
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	99.78
PLN02535	364	glycolate oxidase	99.78
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	99.77
PRK11545	163	gntK gluconate kinase 1; Provisional	99.76
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	99.75
PRK13948	182	shikimate kinase; Provisional	99.75
PLN02979	366	glycolate oxidase	99.74
PRK05057	172	aroK shikimate kinase I; Reviewed	99.73
PRK13949	169	shikimate kinase; Provisional	99.7
PRK13946	184	shikimate kinase; Provisional	99.69
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.68
PLN02199	303	shikimate kinase	99.67
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.67
PRK00625	173	shikimate kinase; Provisional	99.67
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	99.67
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.66
PRK00131	175	aroK shikimate kinase; Reviewed	99.64
PRK13947	171	shikimate kinase; Provisional	99.63
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.62
PRK03731	171	aroL shikimate kinase II; Reviewed	99.61
PRK06762	166	hypothetical protein; Provisional	99.61
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	99.58
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.58
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.53
PRK05541	176	adenylylsulfate kinase; Provisional	99.53
PRK00889	175	adenylylsulfate kinase; Provisional	99.53
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.53
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.53
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.52
PHA02530	300	pseT polynucleotide kinase; Provisional	99.52
PRK03846	198	adenylylsulfate kinase; Provisional	99.52
PRK14531	183	adenylate kinase; Provisional	99.51
PRK14530	215	adenylate kinase; Provisional	99.5
PRK03839	180	putative kinase; Provisional	99.49
PLN02200	234	adenylate kinase family protein	99.48
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	99.48
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.47
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	99.47
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.46
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.46
PRK14532	188	adenylate kinase; Provisional	99.46
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.45
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.44
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	99.42
PRK02496	184	adk adenylate kinase; Provisional	99.42
PRK14527	191	adenylate kinase; Provisional	99.42
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.41
PRK13808	333	adenylate kinase; Provisional	99.41
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.41
PLN02674	244	adenylate kinase	99.41
PLN02459	261	probable adenylate kinase	99.4
PRK06217	183	hypothetical protein; Validated	99.4
PRK14526	211	adenylate kinase; Provisional	99.39
PTZ00088	229	adenylate kinase 1; Provisional	99.38
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	99.37
PRK00279	215	adk adenylate kinase; Reviewed	99.37
PRK04182	180	cytidylate kinase; Provisional	99.36
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.36
PRK14529	223	adenylate kinase; Provisional	99.35
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.35
PRK01184	184	hypothetical protein; Provisional	99.34
PRK14528	186	adenylate kinase; Provisional	99.34
PRK08356	195	hypothetical protein; Provisional	99.33
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.32
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.31
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	99.31
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.3
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.3
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.29
COG0645	170	Predicted kinase [General function prediction only	99.29
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.29
KOG3079|consensus	195		99.29
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.27
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	99.27
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.26
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.26
PRK08233	182	hypothetical protein; Provisional	99.26
PTZ00451	244	dephospho-CoA kinase; Provisional	99.23
PLN02422	232	dephospho-CoA kinase	99.23
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.23
KOG3347|consensus	176		99.22
KOG0635|consensus	207		99.22
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.22
PRK14731	208	coaE dephospho-CoA kinase; Provisional	99.22
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.21
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.2
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	99.19
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	99.18
PRK08118	167	topology modulation protein; Reviewed	99.18
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	99.17
PRK07261	171	topology modulation protein; Provisional	99.17
PRK13975	196	thymidylate kinase; Provisional	99.16
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.15
PRK06547	172	hypothetical protein; Provisional	99.15
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.14
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	99.13
PRK14732	196	coaE dephospho-CoA kinase; Provisional	99.12
COG3709	192	Uncharacterized component of phosphonate metabolis	99.11
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.1
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.1
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.1
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.1
PRK14737	186	gmk guanylate kinase; Provisional	99.09
PRK05480	209	uridine/cytidine kinase; Provisional	99.09
PRK00023	225	cmk cytidylate kinase; Provisional	99.09
PRK04040	188	adenylate kinase; Provisional	99.08
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.07
PRK00698	205	tmk thymidylate kinase; Validated	99.07
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.07
KOG3220|consensus	225		99.06
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.04
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.04
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.03
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.03
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.02
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	99.02
PRK14738	206	gmk guanylate kinase; Provisional	99.01
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.01
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	99.0
PRK13973	213	thymidylate kinase; Provisional	99.0
PRK00300	205	gmk guanylate kinase; Provisional	98.99
PLN02842	505	nucleotide kinase	98.98
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.97
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.96
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.94
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.94
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	98.93
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.93
PLN02924	220	thymidylate kinase	98.91
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.91
PRK12338	319	hypothetical protein; Provisional	98.91
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.89
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.89
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.88
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.87
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.86
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.86
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.85
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.85
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.85
PRK06696	223	uridine kinase; Validated	98.82
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.82
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.81
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.81
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	98.81
PRK06761	282	hypothetical protein; Provisional	98.8
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.8
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.79
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.78
COG1660	286	Predicted P-loop-containing kinase [General functi	98.78
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	98.78
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.77
COG4639	168	Predicted kinase [General function prediction only	98.76
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.75
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.75
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.75
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.74
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.74
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.73
KOG4238|consensus	627		98.73
PTZ00301	210	uridine kinase; Provisional	98.73
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	98.73
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.72
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.71
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.71
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.7
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.68
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	98.66
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	98.66
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	98.66
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.66
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.66
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.65
PLN02348	395	phosphoribulokinase	98.65
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.65
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.64
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.64
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.64
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.64
PLN02165	334	adenylate isopentenyltransferase	98.64
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.64
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.63
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.63
PRK07667	193	uridine kinase; Provisional	98.63
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.62
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.62
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.61
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.61
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.61
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.61
PRK13974	212	thymidylate kinase; Provisional	98.6
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.6
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.6
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.6
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.59
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.59
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.58
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.58
COG4181	228	Predicted ABC-type transport system involved in ly	98.58
PRK09169	2316	hypothetical protein; Validated	98.58
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.57
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.57
PRK13976	209	thymidylate kinase; Provisional	98.56
PRK07429	327	phosphoribulokinase; Provisional	98.56
COG4674	249	Uncharacterized ABC-type transport system, ATPase	98.56
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.56
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.56
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.55
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.55
PRK07933	213	thymidylate kinase; Validated	98.55
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.55
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.55
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.55
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.54
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.54
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.54
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.54
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.54
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.54
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.54
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	98.53
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.53
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.53
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	98.53
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.53
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.52
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.52
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.52
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.51
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.51
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.51
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.5
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.5
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.49
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.49
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.49
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.49
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.48
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.48
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.48
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	98.48
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.47
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.47
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.47
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.46
PRK10908	222	cell division protein FtsE; Provisional	98.45
cd03246	173	ABCC_Protease_Secretion This family represents the	98.45
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.45
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.44
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.44
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.44
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.44
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.44
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.44
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.43
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.43
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.43
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.43
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.43
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	98.42
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.42
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.42
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.42
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.42
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.42
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.41
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.41
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.41
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.41
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.4
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.4
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.4
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.39
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.39
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.39
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.39
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.39
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.38
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.38
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.38
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.38
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.38
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.38
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.37
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.37
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.37
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.37
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.36
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.36
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	98.36
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.36
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.36
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.36
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.36
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.35
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.35
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.35
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.35
KOG0058|consensus	716		98.35
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.35
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.35
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.34
PLN02772	398	guanylate kinase	98.34
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.34
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	98.33
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.33
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.33
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.33
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.33
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.33
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.33
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.33
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.32
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.32
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.32
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.32
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.32
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.32
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.31
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.31
COG4987	573	CydC ABC-type transport system involved in cytochr	98.31
KOG3877|consensus	393		98.31
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.31
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.31
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.31
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.31
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.31
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.3
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.3
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.3
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.3
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.3
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.3
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.3
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.3
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.3
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.3
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.3
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.3
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.3
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.29
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.29
PRK15453	290	phosphoribulokinase; Provisional	98.29
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.29
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.28
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.28
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.28
COG1123	539	ATPase components of various ABC-type transport sy	98.28
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.28
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.28
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.28
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.28
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.28
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.27
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	98.27
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.27
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.27
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.27
COG4559	259	ABC-type hemin transport system, ATPase component	98.27
PRK10938	490	putative molybdenum transport ATP-binding protein	98.27
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.27
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.26
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.26
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.26
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.26
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.25
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.25
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.25
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.25
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.24
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.24
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.24
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.24
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.24
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.24
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.24
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.24
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.24
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.24
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.23
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.23
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.23
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.23
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.23
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.23
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.23
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.22
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.22
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.22
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.22
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.22
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.22
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.22
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.21
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.21
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.21
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.21
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.21
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.21
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.21
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.2
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.2
KOG0057|consensus	591		98.2
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.2
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.19
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.19
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.18
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.18
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.18
PRK11147	635	ABC transporter ATPase component; Reviewed	98.18
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.17
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.17
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.16
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	98.16
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.15
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.15
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.15
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.15
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.15
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.15
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	98.14
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.14
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.14
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.14
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.13
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.13
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.13
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.12
COG0488	530	Uup ATPase components of ABC transporters with dup	98.12
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.11
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.11
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.1
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.09
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.09
KOG3078|consensus	235		98.09
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.08
PRK05439	311	pantothenate kinase; Provisional	98.08
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.08
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.07
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.07
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.07
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.06
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	98.06
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.06
KOG0055|consensus	1228		98.05
KOG0055|consensus	1228		98.05
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.04
PLN02318	656	phosphoribulokinase/uridine kinase	98.04
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.04
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.03
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.03
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.03
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.03
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.02
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.02
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.02
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.01
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.01
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.01
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.0
PLN03073	718	ABC transporter F family; Provisional	98.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.99
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	97.99
PRK10938	490	putative molybdenum transport ATP-binding protein	97.99
PRK15064	530	ABC transporter ATP-binding protein; Provisional	97.99
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	97.99
PRK10261	623	glutathione transporter ATP-binding protein; Provi	97.98
PRK10522	547	multidrug transporter membrane component/ATP-bindi	97.97
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	97.97
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.97
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	97.97
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	97.97
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	97.96
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.96
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	97.96
PRK11147	635	ABC transporter ATPase component; Reviewed	97.96
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.96

>KOG0538|consensus

Probab=100.00  E-value=1.1e-48  Score=356.52  Aligned_cols=224  Identities=38%  Similarity=0.619  Sum_probs=195.3

Q ss_pred             CHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhccc
Q psy16778        189 PLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKL  264 (433)
Q Consensus       189 ~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~  264 (433)
                      +.++....+.+.|++ ..+.|...++++..    |.+||++|.||||+|+||+++|++|++||+++++||+|||+|+|+|
T Consensus         3 ~~~dfe~~A~~~L~K-~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qkm   81 (363)
T KOG0538|consen    3 NVDDFEALAKQQLPK-MAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQKM   81 (363)
T ss_pred             cHHHHHHHHHHhhhH-HHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHhc
Confidence            345666677777766 45666666665543    5899999999999999999999999999999999999999999999


Q ss_pred             cCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccC
Q psy16778        265 AHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFG  344 (433)
Q Consensus       265 ~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G  344 (433)
                      +||+||.++||||.++|++|++|+++++|+|||++++|++.+|||||+++|+++++.+++|||++||+++++|||+|++|
T Consensus        82 a~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG  161 (363)
T KOG0538|consen   82 AHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLG  161 (363)
T ss_pred             cCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEecccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCccchHHHHH-------------------------hhCCCcchhhh----hhccCCHHHHHHHHHHHH
Q psy16778        345 TRYADIRNKFNMPSHLNIEELA-------------------------EKTPQTTKWFQ----LYIYRDREITKSLVQRAE  395 (433)
Q Consensus       345 ~r~~~~~~~~~~~~~~s~e~i~-------------------------~~~~~~~~w~Q----ly~~~~~~~~~~~~~ra~  395 (433)
                      +|+.|++|+|..|..+++.+..                         ..+|....|+|    |++..++.++.++++.|.
T Consensus       162 ~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~Av  241 (363)
T KOG0538|consen  162 RRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKAV  241 (363)
T ss_pred             CchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHHH
Confidence            9999999999988755443321                         12344456777    678889999999999999


Q ss_pred             HcCCcEEEEecCCCCCCCchhh
Q psy16778        396 KAGYKALVLTVDTNVFGTRYAD  417 (433)
Q Consensus       396 ~~G~~aivlTvD~~~~g~r~~~  417 (433)
                      ++|+.+|+||    ..|-|+-|
T Consensus       242 e~G~~GIIVS----NHGgRQlD  259 (363)
T KOG0538|consen  242 EAGVAGIIVS----NHGGRQLD  259 (363)
T ss_pred             HhCCceEEEe----CCCccccC
Confidence            9999999997    34666654

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=100.00  E-value=5.5e-44  Score=346.51  Aligned_cols=216  Identities=33%  Similarity=0.553  Sum_probs=191.1

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778        188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK  263 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~  263 (433)
                      .+++++...+++.+++ ..+.|.+.+++++.    |+.||++|+|+||+|+|++++||+|++||+++++||++||+|+++
T Consensus         4 ~~i~D~e~~Ar~~lp~-~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~~   82 (367)
T PLN02493          4 TNVTEYDAIAKQKLPK-MVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQK   82 (367)
T ss_pred             CCHHHHHHHHHHhCCH-HHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHHh
Confidence            5688999999999988 67888888888775    589999999999999999999999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778        264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  343 (433)
Q Consensus       264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~  343 (433)
                      ++||+||.++||||+++|++|++|+.+++++|||+++. +++.|||+|+++|+++++++++||+++||+++++|||+|++
T Consensus        83 l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~-~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~  161 (367)
T PLN02493         83 MAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTG-PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL  161 (367)
T ss_pred             hcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcC-CCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence            99999999999999999999999999999999999874 46799999999999999999999999999999999999999


Q ss_pred             CccccccccccCCCccchHHHHHh-------------------------hCCCcchhhh----hhccCCHHHHHHHHHHH
Q psy16778        344 GTRYADIRNKFNMPSHLNIEELAE-------------------------KTPQTTKWFQ----LYIYRDREITKSLVQRA  394 (433)
Q Consensus       344 G~r~~~~~~~~~~~~~~s~e~i~~-------------------------~~~~~~~w~Q----ly~~~~~~~~~~~~~ra  394 (433)
                      |+|++|.|++|..|...++..+..                         .+|+...|++    +++..|+.++.+++++|
T Consensus       162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a  241 (367)
T PLN02493        162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA  241 (367)
T ss_pred             CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence            999999999998875554444311                         0122223443    45667899999999999


Q ss_pred             HHcCCcEEEEe
Q psy16778        395 EKAGYKALVLT  405 (433)
Q Consensus       395 ~~~G~~aivlT  405 (433)
                      .++|+++|+|+
T Consensus       242 ~~~Gvd~I~Vs  252 (367)
T PLN02493        242 IQAGAAGIIVS  252 (367)
T ss_pred             HHcCCCEEEEC
Confidence            99999999875

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=100.00  E-value=4.7e-43  Score=339.81  Aligned_cols=211  Identities=28%  Similarity=0.418  Sum_probs=181.2

Q ss_pred             HHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhccccCc
Q psy16778        192 GIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE  267 (433)
Q Consensus       192 e~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~  267 (433)
                      |+...+++++++ ..+.|.+.+++++.    |++||++|+|+||+|+||+++||+|++||+++++||+|||+|+++++||
T Consensus         2 D~~~~Ar~~lp~-~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp   80 (361)
T cd04736           2 DYRSLAKKRLPR-MVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP   80 (361)
T ss_pred             hHHHHHHHhCCH-HHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence            566778888887 56888888887775    5899999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccc
Q psy16778        268 EGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRY  347 (433)
Q Consensus       268 ~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~  347 (433)
                      +||+++||||+++|++|++|+.|++++|||+++. +++.|||+|+. |+++++++++||+++||++||+|||+|++|+|+
T Consensus        81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~-~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~  158 (361)
T cd04736          81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQA-DGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRE  158 (361)
T ss_pred             cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhc-CCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCch
Confidence            9999999999999999999999999999999875 46799999996 699999999999999999999999999999999


Q ss_pred             cccccccCCCccchHHHHHhhCCC---------------------------------------cchhhh---------hh
Q psy16778        348 ADIRNKFNMPSHLNIEELAEKTPQ---------------------------------------TTKWFQ---------LY  379 (433)
Q Consensus       348 ~~~~~~~~~~~~~s~e~i~~~~~~---------------------------------------~~~w~Q---------ly  379 (433)
                      +|.|++|.+|...++..+.+...+                                       ...|-.         ..
T Consensus       159 ~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~p  238 (361)
T cd04736         159 RDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHK  238 (361)
T ss_pred             hhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCC
Confidence            999999988755444332221110                                       111211         23


Q ss_pred             ccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778        380 IYRDREITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       380 ~~~~~~~~~~~~~ra~~~G~~aivlT  405 (433)
                      +..++.++.+.+++|.++|+++|+||
T Consensus       239 viiKgV~~~eda~~a~~~G~d~I~VS  264 (361)
T cd04736         239 LLVKGIVTAEDAKRCIELGADGVILS  264 (361)
T ss_pred             EEEecCCCHHHHHHHHHCCcCEEEEC
Confidence            44467888999999999999999997

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PLN02535 glycolate oxidase

Probab=100.00  E-value=9.6e-43  Score=338.47  Aligned_cols=216  Identities=33%  Similarity=0.509  Sum_probs=187.4

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778        188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK  263 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~  263 (433)
                      .+++++...+++++++ ..+.|.+.+++++.    |+.||++|+|+||+|+|++++||+|++||+++++||+|||+|+++
T Consensus         6 ~~i~d~~~~A~~~lp~-~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~   84 (364)
T PLN02535          6 VNVNEFQELAKQALPK-MYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAMHK   84 (364)
T ss_pred             CCHHHHHHHHHHhCCH-HHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHhc
Confidence            6799999999999988 67888888887775    589999999999999999999999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778        264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  343 (433)
Q Consensus       264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~  343 (433)
                      ++||+||+++||||+++|++|++|+.+++++|||+++. +++.|||+|+++|+++++++++||+++||++|++|||+|++
T Consensus        85 l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~-~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~  163 (364)
T PLN02535         85 LAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSC-NAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRL  163 (364)
T ss_pred             ccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcC-CCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCC
Confidence            99999999999999999999999999999999998764 56899999999999999999999999999999999999999


Q ss_pred             CccccccccccCCCccchHHHH-------------Hh---------hCCCcchhh----hhhccCCHHHHHHHHHHHHHc
Q psy16778        344 GTRYADIRNKFNMPSHLNIEEL-------------AE---------KTPQTTKWF----QLYIYRDREITKSLVQRAEKA  397 (433)
Q Consensus       344 G~r~~~~~~~~~~~~~~s~e~i-------------~~---------~~~~~~~w~----Qly~~~~~~~~~~~~~ra~~~  397 (433)
                      |+|++|.|++|..|....+...             ..         .+|+...|+    .+++..++.++.+.+++|.++
T Consensus       164 g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~  243 (364)
T PLN02535        164 GRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIKAVEV  243 (364)
T ss_pred             CCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHHHHhc
Confidence            9999999999987621111111             00         011111222    245666788999999999999


Q ss_pred             CCcEEEEe
Q psy16778        398 GYKALVLT  405 (433)
Q Consensus       398 G~~aivlT  405 (433)
                      |+++|+|+
T Consensus       244 GvD~I~vs  251 (364)
T PLN02535        244 GVAGIIVS  251 (364)
T ss_pred             CCCEEEEe
Confidence            99999885

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=100.00  E-value=1e-42  Score=338.10  Aligned_cols=219  Identities=29%  Similarity=0.441  Sum_probs=190.2

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778        188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK  263 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~  263 (433)
                      .+++|+...+++.+++ ..+.|.+.+++++.    |+.||++|+|+||+|+|++++||+|++||+++++||+|||+|+++
T Consensus        14 ~~i~D~~~~A~~~lp~-~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~~~   92 (367)
T TIGR02708        14 INTYDLEEMAQQVIPK-GAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAAHK   92 (367)
T ss_pred             CCHHHHHHHHHHhCCH-HHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHHhh
Confidence            6799999999999988 67888888888876    689999999999999999999999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778        264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  343 (433)
Q Consensus       264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~  343 (433)
                      ++||+||.++||||+++|++|++|+.++.++|||+++.++++.|||+|+++|+++++++++||+++||++|++|||+|++
T Consensus        93 l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~  172 (367)
T TIGR02708        93 LANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVG  172 (367)
T ss_pred             ccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence            99999999999999999999999999999999999875567899999999999999999999999999999999999999


Q ss_pred             CccccccccccCCCccchHH-------------HHHhh-----CCCcchhhh----hhccCCHHHHHHHHHHHHHcCCcE
Q psy16778        344 GTRYADIRNKFNMPSHLNIE-------------ELAEK-----TPQTTKWFQ----LYIYRDREITKSLVQRAEKAGYKA  401 (433)
Q Consensus       344 G~r~~~~~~~~~~~~~~s~e-------------~i~~~-----~~~~~~w~Q----ly~~~~~~~~~~~~~ra~~~G~~a  401 (433)
                      |+|++|.|++|..|...+..             .+...     +|+...|+.    +++..|+..+.+++++|.++|+++
T Consensus       173 g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gvd~  252 (367)
T TIGR02708       173 GNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDADRALKAGASG  252 (367)
T ss_pred             CcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCcCE
Confidence            99999999999776332111             11100     111112222    455667888999999999999999


Q ss_pred             EEEecC
Q psy16778        402 LVLTVD  407 (433)
Q Consensus       402 ivlTvD  407 (433)
                      |+||.=
T Consensus       253 I~VS~H  258 (367)
T TIGR02708       253 IWVTNH  258 (367)
T ss_pred             EEECCc
Confidence            998753

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-42  Score=337.02  Aligned_cols=215  Identities=25%  Similarity=0.408  Sum_probs=187.5

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778        188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK  263 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~  263 (433)
                      .+++|+...+++++|+ ..+.|.+.+++++.    |++||++|+|+||+|+|++++||+|++||+++++||+|||+|+++
T Consensus         4 ~~i~D~~~~Ar~~Lp~-~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~~   82 (381)
T PRK11197          4 SAASDYRAAAQRRLPP-FLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLTG   82 (381)
T ss_pred             CCHHHHHHHHHHhCCH-HHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHhh
Confidence            5788999999999988 67888888887775    589999999999999999999999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778        264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  343 (433)
Q Consensus       264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~  343 (433)
                      ++||+||+++||||+++|++|++|+.++.++|||+++. +++.|||+|+++|+++++++++||+++||++|++|||+|++
T Consensus        83 l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~-~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~  161 (381)
T PRK11197         83 MYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAI-KRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP  161 (381)
T ss_pred             ccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhcc-CCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence            99999999999999999999999999999999998774 56899999999999999999999999999999999999999


Q ss_pred             CccccccccccCCCccchHHHHHhh-----------------------------------------------CCCcchhh
Q psy16778        344 GTRYADIRNKFNMPSHLNIEELAEK-----------------------------------------------TPQTTKWF  376 (433)
Q Consensus       344 G~r~~~~~~~~~~~~~~s~e~i~~~-----------------------------------------------~~~~~~w~  376 (433)
                      |+|++|.|++|..|. .++..+.+.                                               +|+...|+
T Consensus       162 G~Rerd~rn~~~~p~-~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l  240 (381)
T PRK11197        162 GARYRDAHSGMSGPN-AAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI  240 (381)
T ss_pred             CCChhhhhcCCCCCC-chhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence            999999999998773 132221110                                               01112222


Q ss_pred             h----hhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778        377 Q----LYIYRDREITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       377 Q----ly~~~~~~~~~~~~~ra~~~G~~aivlT  405 (433)
                      .    +++..++.++.+.+++|.++|+++|+|+
T Consensus       241 r~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs  273 (381)
T PRK11197        241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVS  273 (381)
T ss_pred             HHhCCCCEEEEecCCHHHHHHHHhCCCCEEEEC
Confidence            2    3455677889999999999999999987

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=100.00  E-value=6.7e-42  Score=334.71  Aligned_cols=217  Identities=30%  Similarity=0.434  Sum_probs=187.2

Q ss_pred             CCCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhc
Q psy16778        187 NEPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQ  262 (433)
Q Consensus       187 ~~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~  262 (433)
                      -.+++|+...+++++++ ..+.|.+.+++++.    |+.||++|+|+||+|+|++++||+|++||+++++||+|||+|++
T Consensus        18 ~~~i~D~~~~Ar~~lp~-~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~   96 (383)
T cd03332          18 PVDPERLEALAREALSP-GAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQ   96 (383)
T ss_pred             cCCHHHHHHHHHHhCCH-HHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHH
Confidence            47899999999999988 56888888887765    58999999999999999999999999999999999999999999


Q ss_pred             cccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecc
Q psy16778        263 KLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNV  342 (433)
Q Consensus       263 ~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~  342 (433)
                      +++||+||+++||||+++|++|++|+.+++++|||+++.++++.|||+|+++|+++++++++||+++||++|++|||+|+
T Consensus        97 ~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv  176 (383)
T cd03332          97 ELFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWS  176 (383)
T ss_pred             HhcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            99999999999999999999999999999999999987666789999999999999999999999999999999999999


Q ss_pred             cCccccccccccCCCcc--chHHHHH-------------------------------h------hCCCcchhhh----hh
Q psy16778        343 FGTRYADIRNKFNMPSH--LNIEELA-------------------------------E------KTPQTTKWFQ----LY  379 (433)
Q Consensus       343 ~G~r~~~~~~~~~~~~~--~s~e~i~-------------------------------~------~~~~~~~w~Q----ly  379 (433)
                      .|+|++|.|++|. |..  .++..+.                               +      .+|+...|+.    ++
T Consensus       177 ~g~Rerd~r~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~p  255 (383)
T cd03332         177 LGWRPRDLDLGYL-PFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLP  255 (383)
T ss_pred             CCCchhhhhcCCC-CCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCC
Confidence            9999999999982 321  1211110                               0      0111112222    34


Q ss_pred             ccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778        380 IYRDREITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       380 ~~~~~~~~~~~~~ra~~~G~~aivlT  405 (433)
                      +..++.++.+++++|.++|+++|+|+
T Consensus       256 vivKgV~~~~dA~~a~~~G~d~I~vs  281 (383)
T cd03332         256 IVLKGILHPDDARRAVEAGVDGVVVS  281 (383)
T ss_pred             EEEecCCCHHHHHHHHHCCCCEEEEc
Confidence            56677889999999999999999998

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=100.00  E-value=4.9e-41  Score=326.37  Aligned_cols=217  Identities=31%  Similarity=0.452  Sum_probs=188.4

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778        188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK  263 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~  263 (433)
                      .+++++...+++++|+ ..+.|.+.+++++.    |+.||++|+|+||+|+|++++||+|++||+++++||+|||+|+++
T Consensus         6 ~~i~d~~~~A~~~lp~-~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~   84 (351)
T cd04737           6 INLYDLEAEAKKVIPK-GAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAHG   84 (351)
T ss_pred             CcHHHHHHHHHHhCCH-HHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHHH
Confidence            5689999999999988 67899998888775    589999999999999999999999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778        264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  343 (433)
Q Consensus       264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~  343 (433)
                      ++||+||+++||||+++|++|++|+.+++++|||+++.++++.|||+|+++|+++++++++||+++||++|++|+|+|+.
T Consensus        85 l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~  164 (351)
T cd04737          85 LAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVG  164 (351)
T ss_pred             hcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence            99999999999999999999999999999999999876567899999999999999999999999999999999999999


Q ss_pred             CccccccccccCCCccchHHHHH--------------h-----hCCCcchhhh----hhccCCHHHHHHHHHHHHHcCCc
Q psy16778        344 GTRYADIRNKFNMPSHLNIEELA--------------E-----KTPQTTKWFQ----LYIYRDREITKSLVQRAEKAGYK  400 (433)
Q Consensus       344 G~r~~~~~~~~~~~~~~s~e~i~--------------~-----~~~~~~~w~Q----ly~~~~~~~~~~~~~ra~~~G~~  400 (433)
                      |+|++|.|++|..|...+.....              .     .+|+...|+.    +++..|+.++.+++++|.++|++
T Consensus       165 g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G~d  244 (351)
T cd04737         165 GNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADVAINAGAD  244 (351)
T ss_pred             CcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHHHHHcCCC
Confidence            99999999999877322211111              0     0111111222    34556677889999999999999


Q ss_pred             EEEEe
Q psy16778        401 ALVLT  405 (433)
Q Consensus       401 aivlT  405 (433)
                      +|+|+
T Consensus       245 ~I~vs  249 (351)
T cd04737         245 GIWVS  249 (351)
T ss_pred             EEEEe
Confidence            99997

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PLN02979 glycolate oxidase

Probab=100.00  E-value=1.2e-39  Score=313.07  Aligned_cols=179  Identities=38%  Similarity=0.656  Sum_probs=159.0

Q ss_pred             ceeecccccCCCCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCc
Q psy16778        226 LRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTT  305 (433)
Q Consensus       226 ~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~  305 (433)
                      |+|+||+|+|++++||+|++||+++++||+|||+|+++++||+||.++||||+++|++|++|+.++.++|||+++. +++
T Consensus        44 ~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~-~~~  122 (366)
T PLN02979         44 CDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTG-PGI  122 (366)
T ss_pred             eEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhcc-CCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999874 568


Q ss_pred             ceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHh------------------
Q psy16778        306 KWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAE------------------  367 (433)
Q Consensus       306 ~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~------------------  367 (433)
                      .|||+|+++|+++++++++||+++||+++++|||+|+.|+|++|.|++|.+|...++..+..                  
T Consensus       123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (366)
T PLN02979        123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV  202 (366)
T ss_pred             eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence            99999999999999999999999999999999999999999999999998875544443311                  


Q ss_pred             -------hCCCcchhhh----hhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778        368 -------KTPQTTKWFQ----LYIYRDREITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       368 -------~~~~~~~w~Q----ly~~~~~~~~~~~~~ra~~~G~~aivlT  405 (433)
                             .+|+...|++    +++..|+.++.+++++|.++|+++|+|+
T Consensus       203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~Vs  251 (366)
T PLN02979        203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVS  251 (366)
T ss_pred             hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEEC
Confidence                   1122223433    4566788999999999999999999885

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=100.00  E-value=1.8e-38  Score=308.72  Aligned_cols=213  Identities=33%  Similarity=0.434  Sum_probs=184.0

Q ss_pred             HHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhccccCc
Q psy16778        192 GIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE  267 (433)
Q Consensus       192 e~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~  267 (433)
                      |+...+++++|+ ..+.|.+.+++++.    |++||++|+|+||+|++++++||+|++||+++++||+|||+|+++++||
T Consensus         2 d~~~~A~~~lp~-~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~   80 (344)
T cd02922           2 DFEAAAKKYLSK-KAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP   80 (344)
T ss_pred             hHHHHHHHhCCH-HHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence            567788888888 67888888888775    5899999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHhcCCceEEecCCCCCHHHHHHh-CCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCcc
Q psy16778        268 EGEIGNAAAVGEVGGIYILSTISTTSIEELAEK-TPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTR  346 (433)
Q Consensus       268 ~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~-~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r  346 (433)
                      +||+++||||.++|++|++|+.++.++|||+++ .++.+.|||+|.++|++.+++++++|+++||++|++|+|+|+.|+|
T Consensus        81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r  160 (344)
T cd02922          81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR  160 (344)
T ss_pred             hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence            999999999999999999999999999999877 4557899999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCccchHHHH-------------HhhCCCcchh---------hhhhccCCHHHHHHHHHHHHHcCCcEEEE
Q psy16778        347 YADIRNKFNMPSHLNIEEL-------------AEKTPQTTKW---------FQLYIYRDREITKSLVQRAEKAGYKALVL  404 (433)
Q Consensus       347 ~~~~~~~~~~~~~~s~e~i-------------~~~~~~~~~w---------~Qly~~~~~~~~~~~~~ra~~~G~~aivl  404 (433)
                      ++|.|++|..|...+..+.             .........|         +.+++..++..+.+.+++|.++|+++|+|
T Consensus       161 ~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~v  240 (344)
T cd02922         161 ERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVL  240 (344)
T ss_pred             hhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEE
Confidence            9999999987653333220             0000001112         23455667778899999999999999999


Q ss_pred             e
Q psy16778        405 T  405 (433)
Q Consensus       405 T  405 (433)
                      +
T Consensus       241 s  241 (344)
T cd02922         241 S  241 (344)
T ss_pred             E
Confidence            7

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=100.00  E-value=4.4e-36  Score=294.03  Aligned_cols=199  Identities=35%  Similarity=0.509  Sum_probs=166.1

Q ss_pred             CCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcC
Q psy16778        206 PPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG  281 (433)
Q Consensus       206 ~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g  281 (433)
                      .+.|.+..++++.    |+.+|++|+|+||+|++++++||+|+|||+++++||+|||+|+++++||+||.++|++|.++|
T Consensus         9 ~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~G   88 (356)
T PF01070_consen    9 VFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAG   88 (356)
T ss_dssp             HHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccC
Confidence            3556666666664    589999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccch
Q psy16778        282 GIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLN  361 (433)
Q Consensus       282 ~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s  361 (433)
                      ++|++|+.++.++|+|+++.. ++.|||+|.+.|++.+.++++||+++||+++++|+|++..|+|++|.|++|.+|..++
T Consensus        89 i~~~lss~s~~~~e~ia~~~~-~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~  167 (356)
T PF01070_consen   89 IPMMLSSQSSASLEEIAAASG-GPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLS  167 (356)
T ss_dssp             SEEEEETTCSSCHHHHHHHCT-SEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHC
T ss_pred             cceeccCCccCCHHHHHhhcc-CCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccc
Confidence            999999999999999998865 7899999999999999999999999999999999999999999999999998776543


Q ss_pred             HHHHHhh---------------------------------CCCcchhhh---------hhccCCHHHHHHHHHHHHHcCC
Q psy16778        362 IEELAEK---------------------------------TPQTTKWFQ---------LYIYRDREITKSLVQRAEKAGY  399 (433)
Q Consensus       362 ~e~i~~~---------------------------------~~~~~~w~Q---------ly~~~~~~~~~~~~~ra~~~G~  399 (433)
                      +..+.+.                                 ......|-.         +++..|+.++.+++++|.++|+
T Consensus       168 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~  247 (356)
T PF01070_consen  168 PRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGV  247 (356)
T ss_dssp             TTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-
T ss_pred             cccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHHHHHhcCC
Confidence            2222110                                 011122322         4567788899999999999999


Q ss_pred             cEEEEe
Q psy16778        400 KALVLT  405 (433)
Q Consensus       400 ~aivlT  405 (433)
                      ++|+|+
T Consensus       248 ~~i~vs  253 (356)
T PF01070_consen  248 DGIDVS  253 (356)
T ss_dssp             SEEEEE
T ss_pred             CEEEec
Confidence            999997

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.93  E-value=2.7e-25  Score=184.66  Aligned_cols=158  Identities=52%  Similarity=0.897  Sum_probs=147.9

Q ss_pred             EcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHH
Q psy16778         44 MGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRN  123 (433)
Q Consensus        44 ~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~  123 (433)
                      +|.+||||||+++.|++++|+.|+++|+++.+.++.++..|++.++++.++|++.+...+......+..+||.|+.+.+.
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALKr~   80 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALKRS   80 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999998888887899999999999


Q ss_pred             HHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        124 YRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       124 ~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      ||+.|++..+ ...|||+.+.+++.+|+.+|.+++++.+++..|++.+++|..  +...+.|+.+.++++++.++...+.
T Consensus        81 YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~P~~--de~vi~idi~~~~e~vv~~~~~~l~  158 (161)
T COG3265          81 YRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASLLDSQFATLEEPGA--DEDVLTIDIDQPPEEVVAQALAWLK  158 (161)
T ss_pred             HHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHHHhcCCCC--CCCEEEeeCCCCHHHHHHHHHHHHh
Confidence            9999999876 889999999999999999999999999999999999999984  3389999999999999999887654


Q ss_pred             C
Q psy16778        203 T  203 (433)
Q Consensus       203 ~  203 (433)
                      .
T Consensus       159 ~  159 (161)
T COG3265         159 E  159 (161)
T ss_pred             c
Confidence            3

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=99.92  E-value=6.6e-26  Score=220.50  Aligned_cols=204  Identities=31%  Similarity=0.397  Sum_probs=166.3

Q ss_pred             HHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhccccCccchH
Q psy16778        196 KSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEI  271 (433)
Q Consensus       196 ~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~  271 (433)
                      ..+..++  ..+.|.+..+.++.    |..+|++|.|+||+|.+++++|++|++||+++++||+|+|+++++++|++||.
T Consensus         7 ~a~~~~~--~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~~~ge~   84 (360)
T COG1304           7 AAQRRLP--KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAHPEGEV   84 (360)
T ss_pred             HHhhhcc--hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccChhhHH
Confidence            3444444  24566666666544    35799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccc
Q psy16778        272 GNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIR  351 (433)
Q Consensus       272 ~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~  351 (433)
                      ..+++|..+|+++++|+.+++++|++.+..+     ||+|+..|++++.+++++|+++||+++++|+|+++.|+|++|.+
T Consensus        85 ~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~-----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~  159 (360)
T COG1304          85 INAKLAAAAGEPFILSTVGSQRIEEVAAAPP-----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAV  159 (360)
T ss_pred             HHHHHHHHcCCCeeeeccccCcHHHhhcCcc-----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHHHHHH
Confidence            9999999999999999999999999987643     99999999999999999999999999999999999999999999


Q ss_pred             cccCCCccchH-----------------------HHHHhh------CCCcchhhh----hhccCCHHHHHHHHHHHHHcC
Q psy16778        352 NKFNMPSHLNI-----------------------EELAEK------TPQTTKWFQ----LYIYRDREITKSLVQRAEKAG  398 (433)
Q Consensus       352 ~~~~~~~~~s~-----------------------e~i~~~------~~~~~~w~Q----ly~~~~~~~~~~~~~ra~~~G  398 (433)
                      +++..|+...+                       .++...      +++...|+.    ..+..++.++.++++.|...|
T Consensus       160 ~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg  239 (360)
T COG1304         160 NGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGAGGTG  239 (360)
T ss_pred             hccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhhccCC
Confidence            88876532211                       222211      111122322    234556788889999999999


Q ss_pred             CcEEEEec
Q psy16778        399 YKALVLTV  406 (433)
Q Consensus       399 ~~aivlTv  406 (433)
                      +.+|+++=
T Consensus       240 ~~~I~vsn  247 (360)
T COG1304         240 ADGIEVSN  247 (360)
T ss_pred             ceEEEEEc
Confidence            99999973

>KOG3354|consensus

Probab=99.91  E-value=1.5e-23  Score=174.82  Aligned_cols=164  Identities=54%  Similarity=0.837  Sum_probs=149.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEE
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLV  116 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~  116 (433)
                      -+..|+++|.+||||||+++.|++++|+.|+|+|+++.+.+...+..|++.++.++++|+..+...+...+..+..+|+.
T Consensus        11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~vVlA   90 (191)
T KOG3354|consen   11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQGVVLA   90 (191)
T ss_pred             CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeEEEE
Confidence            34589999999999999999999999999999999999988889999999999999999999999998888899999999


Q ss_pred             cCcccHHHHHHHHh--------cCC---eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEc
Q psy16778        117 CSALRRNYRDIIRN--------NNR---VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVS  185 (433)
Q Consensus       117 ~~~~~~~~~~~l~~--------~~~---~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id  185 (433)
                      |+.+.+.||+.|+.        ..+   +.+|||.++.+++.+|+.+|.+++.+.+.++.|++.++.+.. .+.+.+.|+
T Consensus        91 CSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~lleSQf~~LE~p~~-~e~div~is  169 (191)
T KOG3354|consen   91 CSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADLLESQFATLEAPDA-DEEDIVTIS  169 (191)
T ss_pred             hHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHHHHHHHHhccCCCC-CccceEEEe
Confidence            99999999999987        222   789999999999999999999999999999999999999876 444778888


Q ss_pred             cC-CCHHHHHHHHhcCC
Q psy16778        186 VN-EPLEGIVSKSAIMP  201 (433)
Q Consensus       186 ~~-~~~ee~~~~i~~~l  201 (433)
                      .. .+++++++.|.+.+
T Consensus       170 v~~~~~e~iv~tI~k~~  186 (191)
T KOG3354|consen  170 VKTYSVEEIVDTIVKMV  186 (191)
T ss_pred             eccCCHHHHHHHHHHHH
Confidence            87 99999999887654

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=99.87  E-value=9.3e-22  Score=190.20  Aligned_cols=195  Identities=41%  Similarity=0.593  Sum_probs=162.0

Q ss_pred             HHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhccccCc
Q psy16778        192 GIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE  267 (433)
Q Consensus       192 e~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~  267 (433)
                      ++...+++.++. ..+.|....+.++.    |..+|++|+|+||+|.+++++|+++++||++++.||+++|+++.++.||
T Consensus         2 ~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~   80 (299)
T cd02809           2 DLRALARRRLPK-AVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP   80 (299)
T ss_pred             hHHHHHHHhCCH-HHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence            345566677766 45666666665554    5789999999999999999999999999999999999999999998999


Q ss_pred             cchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccc
Q psy16778        268 EGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRY  347 (433)
Q Consensus       268 ~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~  347 (433)
                      +++..++++|.+.|+++++++.++.++|++.+..+ .+.|+|+|...|.+.+.++++++++.|+++|.+++|.|..|.|.
T Consensus        81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~-~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~  159 (299)
T cd02809          81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAP-GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRL  159 (299)
T ss_pred             hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcC-CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCC
Confidence            99999999999999999999988999999987765 78999999988888888999999999999999999999877661


Q ss_pred             cccccccCCCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778        348 ADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       348 ~~~~~~~~~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT  405 (433)
                                ....++.+.+.++       +++.-+...+.+.+++|.++|+++|+++
T Consensus       160 ----------~~~~i~~l~~~~~-------~pvivK~v~s~~~a~~a~~~G~d~I~v~  200 (299)
T cd02809         160 ----------TWDDLAWLRSQWK-------GPLILKGILTPEDALRAVDAGADGIVVS  200 (299)
T ss_pred             ----------CHHHHHHHHHhcC-------CCEEEeecCCHHHHHHHHHCCCCEEEEc
Confidence                      1123444444433       2333344578899999999999999997

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>KOG0538|consensus

Probab=99.85  E-value=3.5e-22  Score=183.23  Aligned_cols=142  Identities=34%  Similarity=0.525  Sum_probs=118.7

Q ss_pred             CCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc-------------
Q psy16778        290 STTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD-------------  349 (433)
Q Consensus       290 s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~-------------  349 (433)
                      +..++|+.|...++...|-|++..++++.|.+.+..|.+. -++..++      ++.|.++|++..-             
T Consensus         3 ~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qkma   82 (363)
T KOG0538|consen    3 NVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQKMA   82 (363)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHhcc
Confidence            4568999998887778999999999999999999988655 5555444      4568899997751             


Q ss_pred             ----------cccccCC------CccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC
Q psy16778        350 ----------IRNKFNM------PSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGT  413 (433)
Q Consensus       350 ----------~~~~~~~------~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g~  413 (433)
                                .+...++      -+++|+|||.+++|....|||||+.+|+..++++++||+++||||||||||+|+.|+
T Consensus        83 ~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~  162 (363)
T KOG0538|consen   83 HPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGR  162 (363)
T ss_pred             CCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccccC
Confidence                      1111111      257799999999988899999999999999999999999999999999999999999


Q ss_pred             chhhhhcCCCCCCCCCCC
Q psy16778        414 RYADIRNKFNMPSHLKED  431 (433)
Q Consensus       414 r~~~~r~~~~~~~~~~~~  431 (433)
                      |+.|+||+|.+|..+++-
T Consensus       163 R~~D~~n~f~lp~~l~lk  180 (363)
T KOG0538|consen  163 RESDIKNKFSLPKNLTLK  180 (363)
T ss_pred             chhhhhhcccCCcccccc
Confidence            999999999999876653

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.85  E-value=2.3e-21  Score=168.27  Aligned_cols=159  Identities=21%  Similarity=0.347  Sum_probs=122.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEc
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVC  117 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~  117 (433)
                      ++.|+|+|++||||||+++.||+.|+.+|+|+|.+++...  ++.....|.. .++..|+..|..+...+....+.||+.
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~--g~sI~eIF~~-~GE~~FR~~E~~vl~~l~~~~~~ViaT   78 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT--GMSIAEIFEE-EGEEGFRRLETEVLKELLEEDNAVIAT   78 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH--CcCHHHHHHH-HhHHHHHHHHHHHHHHHhhcCCeEEEC
Confidence            4789999999999999999999999999999999986532  2333344443 456667766665544444444688887


Q ss_pred             Cc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC-----CHHhHHHHHhhccCCCCCCCCCeEEEccCCC
Q psy16778        118 SA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM-----PADLLESQFQTLEEPDPLVEPDVRTVSVNEP  189 (433)
Q Consensus       118 ~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~  189 (433)
                      |+   ..++.+..|++.+  .+|||++|++++++|+.....+|.     +.+.+.+.++.+.++|  ++.++++++++..
T Consensus        79 GGG~v~~~enr~~l~~~g--~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y--~e~a~~~~~~~~~  154 (172)
T COG0703          79 GGGAVLSEENRNLLKKRG--IVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLY--REVADFIIDTDDR  154 (172)
T ss_pred             CCccccCHHHHHHHHhCC--eEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHH--HHhCcEEecCCCC
Confidence            76   6688999999986  899999999999999985444443     2356888888888888  7789999999955


Q ss_pred             HHHHHHHHhcCCCC
Q psy16778        190 LEGIVSKSAIMPPT  203 (433)
Q Consensus       190 ~ee~~~~i~~~l~~  203 (433)
                      .++++++|...+..
T Consensus       155 ~~~v~~~i~~~l~~  168 (172)
T COG0703         155 SEEVVEEILEALEG  168 (172)
T ss_pred             cHHHHHHHHHHHHH
Confidence            58898888877644

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=99.80  E-value=3.7e-20  Score=180.35  Aligned_cols=139  Identities=29%  Similarity=0.467  Sum_probs=117.1

Q ss_pred             CCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc-------------
Q psy16778        290 STTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD-------------  349 (433)
Q Consensus       290 s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~-------------  349 (433)
                      +..+||++|+...+...|-|+...+++|.+...|+.|... .+...++      ++.+.++|++...             
T Consensus         5 ~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~~l~   84 (367)
T PLN02493          5 NVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMA   84 (367)
T ss_pred             CHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHHhhc
Confidence            4568999999888888999999999999999999999765 7777777      4558889987651             


Q ss_pred             ----------cccccC------CCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC
Q psy16778        350 ----------IRNKFN------MPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGT  413 (433)
Q Consensus       350 ----------~~~~~~------~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g~  413 (433)
                                .+...+      ..+++|+|+|+++.+ .++|||+|+++|+..+.++++||+++||++||||||+|+.|+
T Consensus        85 hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~-~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~  163 (367)
T PLN02493         85 HPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGR  163 (367)
T ss_pred             CCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCC-CCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCc
Confidence                      112222      236779999998744 578999999999999999999999999999999999999999


Q ss_pred             chhhhhcCCCCCCCCC
Q psy16778        414 RYADIRNKFNMPSHLK  429 (433)
Q Consensus       414 r~~~~r~~~~~~~~~~  429 (433)
                      ||+|.||+|.+|+++.
T Consensus       164 R~~d~r~~~~~p~~~~  179 (367)
T PLN02493        164 RESDIKNRFTLPPNLT  179 (367)
T ss_pred             chhhhcccCCCCcccc
Confidence            9999999999997654

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=99.80  E-value=5.9e-20  Score=178.77  Aligned_cols=135  Identities=30%  Similarity=0.421  Sum_probs=114.1

Q ss_pred             CHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc----------------
Q psy16778        293 SIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD----------------  349 (433)
Q Consensus       293 ~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~----------------  349 (433)
                      +||++|+...+...|-|+...+++|.+...|+.|... .+...++      ++.++++|++...                
T Consensus         2 D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp~   81 (361)
T cd04736           2 DYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWPN   81 (361)
T ss_pred             hHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCCc
Confidence            6899999888888999999999999999999999765 7777777      3558899998861                


Q ss_pred             -------cccccC------CCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCchh
Q psy16778        350 -------IRNKFN------MPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYA  416 (433)
Q Consensus       350 -------~~~~~~------~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g~r~~  416 (433)
                             .+...+      ..+++|+|||+++.+ ++.|||||+. |+.++.++++||+++||++||||||+|+.|+||+
T Consensus        82 gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~-~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~  159 (361)
T cd04736          82 GDLALARAAAKAGIPFVLSTASNMSIEDVARQAD-GDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER  159 (361)
T ss_pred             HHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcC-CCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence                   122222      236789999998764 5789999996 6999999999999999999999999999999999


Q ss_pred             hhhcCCCCCCCCC
Q psy16778        417 DIRNKFNMPSHLK  429 (433)
Q Consensus       417 ~~r~~~~~~~~~~  429 (433)
                      |.||+|.+|++++
T Consensus       160 d~r~~~~~p~~~~  172 (361)
T cd04736         160 DLRNGFAIPFRYT  172 (361)
T ss_pred             hhhcCCCCCcccc
Confidence            9999999997654

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.79  E-value=4.8e-18  Score=149.96  Aligned_cols=160  Identities=53%  Similarity=0.893  Sum_probs=125.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcc
Q psy16778         41 FVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSAL  120 (433)
Q Consensus        41 I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~  120 (433)
                      |+|+|++||||||+++.|++.+|..++++|++...........+..+++.....+++.+.+.+...+..+..+||+++..
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t~~   80 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCSAL   80 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence            57999999999999999999999999999998643222222335555555666777777777777777777789999988


Q ss_pred             cHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhc
Q psy16778        121 RRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAI  199 (433)
Q Consensus       121 ~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~  199 (433)
                      .+.+++.+++... +.++||++|++++.+|+.+|.++..+.+.+..++..++.+.. .+...++||++.+++++.++|..
T Consensus        81 ~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~-~e~~~~~id~~~~~~~~~~~~~~  159 (163)
T TIGR01313        81 KRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFMKADMLESQFAALEEPLA-DETDVLRVDIDQPLEGVEEDCIA  159 (163)
T ss_pred             HHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCC-CCCceEEEECCCCHHHHHHHHHH
Confidence            8888888886654 678999999999999999997655567788888887777643 33467899999999999988866


Q ss_pred             CC
Q psy16778        200 MP  201 (433)
Q Consensus       200 ~l  201 (433)
                      .+
T Consensus       160 ~~  161 (163)
T TIGR01313       160 VV  161 (163)
T ss_pred             HH
Confidence            53

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=99.78  E-value=1.1e-19  Score=178.10  Aligned_cols=136  Identities=26%  Similarity=0.363  Sum_probs=114.9

Q ss_pred             CCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc-------------
Q psy16778        290 STTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD-------------  349 (433)
Q Consensus       290 s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~-------------  349 (433)
                      +..++|++|+...+...|-|+..++++|.+...|+.|.+. .+...++      ++.+.++|++..-             
T Consensus         5 ~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~~l~   84 (381)
T PRK11197          5 AASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLTGMY   84 (381)
T ss_pred             CHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHhhcc
Confidence            4568999999888888999999999999999999999765 7777777      3558889987761             


Q ss_pred             ----------cccccC------CCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC
Q psy16778        350 ----------IRNKFN------MPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGT  413 (433)
Q Consensus       350 ----------~~~~~~------~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g~  413 (433)
                                .+...+      ..++.|+|||.+..+ .+.|||+|+++|+..+.++++||+++||++||||||+|+.|+
T Consensus        85 hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~-~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~  163 (381)
T PRK11197         85 ARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIK-RPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGA  163 (381)
T ss_pred             CCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccC-CCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCC
Confidence                      111112      236779999988754 579999999999999999999999999999999999999999


Q ss_pred             chhhhhcCCCCCC
Q psy16778        414 RYADIRNKFNMPS  426 (433)
Q Consensus       414 r~~~~r~~~~~~~  426 (433)
                      ||+|.||+|++|+
T Consensus       164 Rerd~rn~~~~p~  176 (381)
T PRK11197        164 RYRDAHSGMSGPN  176 (381)
T ss_pred             ChhhhhcCCCCCC
Confidence            9999999999884

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.78  E-value=7.7e-18  Score=150.19  Aligned_cols=166  Identities=46%  Similarity=0.814  Sum_probs=134.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEE
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLV  116 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~  116 (433)
                      .|++++|+|+|||||||+++.|++.++..++++|++...........|+++++.....+...+.+.+......+...+|.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv   81 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFIV   81 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCCCEEEE
Confidence            47899999999999999999999999999999999865443444456888888777778888777776554433334455


Q ss_pred             cCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHH
Q psy16778        117 CSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVS  195 (433)
Q Consensus       117 ~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~  195 (433)
                      +++....+++.+++... +.+|||+++++++.+|+.+|.++..+.+.+..|+..++++.. .+...+.||++.+++++..
T Consensus        82 ~s~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e~~~~-~e~~~~~~d~~~~~~~~~~  160 (176)
T PRK09825         82 CSSLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDALERPCA-DEHDIARIDVNHDIENVTE  160 (176)
T ss_pred             EEecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHcCCCCC-CcCCeEEEECCCCHHHHHH
Confidence            88889999999988765 789999999999999999998777788899999998887654 4456889999988888888


Q ss_pred             HHhcCCCC
Q psy16778        196 KSAIMPPT  203 (433)
Q Consensus       196 ~i~~~l~~  203 (433)
                      .+...+..
T Consensus       161 ~~~~~~~~  168 (176)
T PRK09825        161 QCRQAVQA  168 (176)
T ss_pred             HHHHHHHH
Confidence            87776643

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=99.78  E-value=2e-19  Score=175.46  Aligned_cols=141  Identities=26%  Similarity=0.375  Sum_probs=117.6

Q ss_pred             cCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc-----------
Q psy16778        288 TISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD-----------  349 (433)
Q Consensus       288 ~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~-----------  349 (433)
                      ..+..++|++|+...+...|-|+...+++|.+...|+.|... .+...++      ++.+.++|++...           
T Consensus        13 ~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~~~   92 (367)
T TIGR02708        13 FINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAAHK   92 (367)
T ss_pred             CCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHHhh
Confidence            345678999999888888999999999999999999999755 7777777      3557888887651           


Q ss_pred             ------------cccccC------CCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q psy16778        350 ------------IRNKFN------MPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  411 (433)
Q Consensus       350 ------------~~~~~~------~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~  411 (433)
                                  .+...+      ..++.|+|+|.++.++.+.|||+|+.+|+.++.++++||+++||+|||||||+|+.
T Consensus        93 l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~  172 (367)
T TIGR02708        93 LANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVG  172 (367)
T ss_pred             ccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence                        111112      23678999999875456799999999999999999999999999999999999999


Q ss_pred             CCchhhhhcCCCCCCCC
Q psy16778        412 GTRYADIRNKFNMPSHL  428 (433)
Q Consensus       412 g~r~~~~r~~~~~~~~~  428 (433)
                      |+||+|.||+|.+|..+
T Consensus       173 g~R~~d~r~~~~~p~~~  189 (367)
T TIGR02708       173 GNREVDVRNGFVFPVGM  189 (367)
T ss_pred             CcchhhhhcCCCCCCcc
Confidence            99999999999988543

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>PLN02535 glycolate oxidase

Probab=99.78  E-value=1.5e-19  Score=176.41  Aligned_cols=137  Identities=31%  Similarity=0.444  Sum_probs=115.5

Q ss_pred             cCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc-----------
Q psy16778        288 TISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD-----------  349 (433)
Q Consensus       288 ~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~-----------  349 (433)
                      ..+..++|+.|+...+...|-|+..++++|.+...|+.|... .+...++      ++.+.++|++..-           
T Consensus         5 ~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~   84 (364)
T PLN02535          5 IVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAMHK   84 (364)
T ss_pred             cCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHhc
Confidence            445678999998888888999999999999999999999765 7777777      3558888987651           


Q ss_pred             ------------cccccC------CCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q psy16778        350 ------------IRNKFN------MPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  411 (433)
Q Consensus       350 ------------~~~~~~------~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~  411 (433)
                                  .+...+      ..+++|+|||.+..+ .+.|||+|+++|+.++.++++||+++||++||||||+|+.
T Consensus        85 l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~-~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~  163 (364)
T PLN02535         85 LAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCN-AVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRL  163 (364)
T ss_pred             ccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCC-CCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCC
Confidence                        111112      236789999988643 5799999999999999999999999999999999999999


Q ss_pred             CCchhhhhcCCCCC
Q psy16778        412 GTRYADIRNKFNMP  425 (433)
Q Consensus       412 g~r~~~~r~~~~~~  425 (433)
                      |+||+|.||+|.+|
T Consensus       164 g~R~~d~r~~~~~p  177 (364)
T PLN02535        164 GRREADIKNKMISP  177 (364)
T ss_pred             CCchhhhhcCCCCc
Confidence            99999999999988

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=99.77  E-value=5.5e-19  Score=173.53  Aligned_cols=137  Identities=28%  Similarity=0.429  Sum_probs=114.5

Q ss_pred             cCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc-----------
Q psy16778        288 TISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD-----------  349 (433)
Q Consensus       288 ~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~-----------  349 (433)
                      ..+..+||++|+...+...|-|+..+.++|.+...|+.|.+. -+...++      ++.+.++|+...-           
T Consensus        18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~   97 (383)
T cd03332          18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE   97 (383)
T ss_pred             cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence            456778999998887778899999999999999999999766 7777777      3558888887751           


Q ss_pred             ------------cccccC------CCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q psy16778        350 ------------IRNKFN------MPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  411 (433)
Q Consensus       350 ------------~~~~~~------~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~  411 (433)
                                  .+...+      ..+++|+|||.+..++++.|||||+++|+..+.++++||+++||++||||||+|+.
T Consensus        98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~  177 (383)
T cd03332          98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL  177 (383)
T ss_pred             hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence                        111111      23678999999875556899999999999999999999999999999999999999


Q ss_pred             CCchhhhhcCCCCC
Q psy16778        412 GTRYADIRNKFNMP  425 (433)
Q Consensus       412 g~r~~~~r~~~~~~  425 (433)
                      |+||+|.|++| .|
T Consensus       178 g~Rerd~r~~~-~p  190 (383)
T cd03332         178 GWRPRDLDLGY-LP  190 (383)
T ss_pred             CCchhhhhcCC-CC
Confidence            99999999999 45

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.76  E-value=2.6e-17  Score=145.09  Aligned_cols=158  Identities=46%  Similarity=0.853  Sum_probs=126.4

Q ss_pred             EcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHH
Q psy16778         44 MGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRN  123 (433)
Q Consensus        44 ~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~  123 (433)
                      +|+|||||||+++.|++.+|..++++|.+...........|+++++.....+...+.+........+...||.+++....
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~s~~~~~   80 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKH   80 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEEEecchHH
Confidence            59999999999999999999999999987543333334558888887777888888887776555544445558888899


Q ss_pred             HHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        124 YRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       124 ~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      +++.+++... +..|||+++.+++.+|+.+|.++....+.+..|+..++++.. .+...++||+..++++++..+...+.
T Consensus        81 ~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~ep~~~-~e~~~~~id~~~~~~~~~~~~~~~~~  159 (163)
T PRK11545         81 YRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGA-DETDVLVVDIDQPLEGVVASTIEVIK  159 (163)
T ss_pred             HHHHHHccCCCEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHcCCCCC-CCCCEEEEeCCCCHHHHHHHHHHHHH
Confidence            9999988655 889999999999999999998766678888999988887754 22456888888888998888877653

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=99.75  E-value=1.1e-18  Score=170.04  Aligned_cols=141  Identities=32%  Similarity=0.403  Sum_probs=117.7

Q ss_pred             cCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc-----------
Q psy16778        288 TISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD-----------  349 (433)
Q Consensus       288 ~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~-----------  349 (433)
                      ..+..+||++|....+...|.|+....++|.+...|+.|.+. .+...++      ++.+.++|++..-           
T Consensus         5 ~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~   84 (351)
T cd04737           5 IINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAHG   84 (351)
T ss_pred             cCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHHH
Confidence            345678999999888888999999999999999999999765 7777777      3457888887751           


Q ss_pred             ------------ccccc------CCCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCC
Q psy16778        350 ------------IRNKF------NMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  411 (433)
Q Consensus       350 ------------~~~~~------~~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~  411 (433)
                                  .+...      +..+++|+|||.++.+++..|||+|+++|+..+.++++||+++||++|+||||+|+.
T Consensus        85 l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~  164 (351)
T cd04737          85 LAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVG  164 (351)
T ss_pred             hcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence                        11111      223678999999876556899999999999999999999999999999999999999


Q ss_pred             CCchhhhhcCCCCCCCC
Q psy16778        412 GTRYADIRNKFNMPSHL  428 (433)
Q Consensus       412 g~r~~~~r~~~~~~~~~  428 (433)
                      |+|++|+|++|.+|.++
T Consensus       165 g~R~~d~r~~~~~p~~~  181 (351)
T cd04737         165 GNREADIRNKFQFPFGM  181 (351)
T ss_pred             CcchHHHHhcCCCCccc
Confidence            99999999999999644

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK13948 shikimate kinase; Provisional

Probab=99.75  E-value=9.7e-18  Score=149.73  Aligned_cols=159  Identities=17%  Similarity=0.151  Sum_probs=114.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      ..+..|+|+|++||||||+++.|++++|+.++|+|.+++...  ++.....|+. .++..|+..+..+...+....+.||
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~--g~si~~if~~-~Ge~~fR~~E~~~l~~l~~~~~~VI   84 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT--GKSIPEIFRH-LGEAYFRRCEAEVVRRLTRLDYAVI   84 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH--hCCHHHHHHH-hCHHHHHHHHHHHHHHHHhcCCeEE
Confidence            355899999999999999999999999999999998875422  1111222332 3456666666554443333346788


Q ss_pred             EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC-----HHhHHHHHhhccCCCCCCCCCeEEEccC
Q psy16778        116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP-----ADLLESQFQTLEEPDPLVEPDVRTVSVN  187 (433)
Q Consensus       116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~Id~~  187 (433)
                      ++|+   ..+.+++.+++.+  .+|||+++++++.+|+..+ ++|..     .+.+...++.+++.|  .. ++++|+++
T Consensus        85 a~GgG~v~~~~n~~~l~~~g--~vV~L~~~~e~l~~Rl~~~-~RPll~~~~~~~~l~~l~~~R~~~Y--~~-a~~~i~t~  158 (182)
T PRK13948         85 SLGGGTFMHEENRRKLLSRG--PVVVLWASPETIYERTRPG-DRPLLQVEDPLGRIRTLLNEREPVY--RQ-ATIHVSTD  158 (182)
T ss_pred             ECCCcEEcCHHHHHHHHcCC--eEEEEECCHHHHHHHhcCC-CCCCCCCCChHHHHHHHHHHHHHHH--Hh-CCEEEECC
Confidence            8765   4567888888774  8999999999999999543 33321     346677777777776  33 78999988


Q ss_pred             -CCHHHHHHHHhcCCCC
Q psy16778        188 -EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       188 -~~~ee~~~~i~~~l~~  203 (433)
                       .+++++++.|.+.+..
T Consensus       159 ~~~~~ei~~~i~~~l~~  175 (182)
T PRK13948        159 GRRSEEVVEEIVEKLWA  175 (182)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence             8999999998877643

>PLN02979 glycolate oxidase

Probab=99.74  E-value=2.6e-18  Score=165.88  Aligned_cols=99  Identities=38%  Similarity=0.649  Sum_probs=89.3

Q ss_pred             EEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCcchhhhhhccCCHHHHH
Q psy16778        309 QLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITK  388 (433)
Q Consensus       309 qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~  388 (433)
                      |-..+.|.|.  .+.+.|.++|...++.|+                   ++.|+|+|++..+ .+.|||+|+++|+..+.
T Consensus        80 ~~l~hpdgE~--a~ARAA~~agi~~~lSt~-------------------ss~slEeIa~a~~-~~~wfQLY~~~Dr~~~~  137 (366)
T PLN02979         80 QKMAHPDGEY--ATARAASAAGTIMTLSSW-------------------ATSSVEEVASTGP-GIRFFQLYVYKNRNVVE  137 (366)
T ss_pred             HhhCCCChHH--HHHHHHHHcCCCeeeccC-------------------cCCCHHHHHhccC-CCeEEEEeecCCHHHHH
Confidence            3444788888  689999999999999998                   7899999998754 57999999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCCCCCCchhhhhcCCCCCCCCC
Q psy16778        389 SLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLK  429 (433)
Q Consensus       389 ~~~~ra~~~G~~aivlTvD~~~~g~r~~~~r~~~~~~~~~~  429 (433)
                      ++++||+++||++||||||+|+.|+||+|.||+|++|++++
T Consensus       138 ~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~  178 (366)
T PLN02979        138 QLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLT  178 (366)
T ss_pred             HHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccc
Confidence            99999999999999999999999999999999999997654

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.73  E-value=5.4e-17  Score=144.35  Aligned_cols=159  Identities=19%  Similarity=0.223  Sum_probs=113.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      .+.+.|+|+|++||||||+++.|++.+|++++++|.......  +......++.. ++..|+..+..+...+.....+|+
T Consensus         2 ~~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~--g~~i~~~~~~~-g~~~fr~~e~~~l~~l~~~~~~vi   78 (172)
T PRK05057          2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADIGWVFDVE-GEEGFRDREEKVINELTEKQGIVL   78 (172)
T ss_pred             CCCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh--CcCHhHHHHHh-CHHHHHHHHHHHHHHHHhCCCEEE
Confidence            456789999999999999999999999999999998754321  11122223322 334444444443333333456788


Q ss_pred             EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC-----HHhHHHHHhhccCCCCCCCCCeEEEccC
Q psy16778        116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP-----ADLLESQFQTLEEPDPLVEPDVRTVSVN  187 (433)
Q Consensus       116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~Id~~  187 (433)
                      ++++   ..+..+..+++.+  .+|||++|.+++.+|+..+..+|..     .+.++..+..+.+.|  ++.++++|+++
T Consensus        79 ~~ggg~v~~~~~~~~l~~~~--~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y--~~~Ad~~idt~  154 (172)
T PRK05057         79 ATGGGSVKSRETRNRLSARG--VVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLY--EEIADVTIRTD  154 (172)
T ss_pred             EcCCchhCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHH--HhhCCEEEECC
Confidence            7765   3457778888775  8999999999999999876555432     345666777777766  56688999998


Q ss_pred             -CCHHHHHHHHhcCC
Q psy16778        188 -EPLEGIVSKSAIMP  201 (433)
Q Consensus       188 -~~~ee~~~~i~~~l  201 (433)
                       .+++++++.|.+.+
T Consensus       155 ~~s~~ei~~~i~~~l  169 (172)
T PRK05057        155 DQSAKVVANQIIHML  169 (172)
T ss_pred             CCCHHHHHHHHHHHH
Confidence             99999999987765

>PRK13949 shikimate kinase; Provisional

Probab=99.70  E-value=1.4e-16  Score=141.27  Aligned_cols=155  Identities=15%  Similarity=0.197  Sum_probs=108.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCS  118 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~  118 (433)
                      +.|+|+|++||||||+++.|++.+|++++|+|.+.+...  +......++. .++..++.++..+...+....++||++|
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~--~~~~~~~~~~-~g~~~fr~~e~~~l~~l~~~~~~vis~G   78 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRF--HKTVGDIFAE-RGEAVFRELERNMLHEVAEFEDVVISTG   78 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHH--CccHHHHHHH-hCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence            469999999999999999999999999999998764321  1122222332 3344555555544443443346888776


Q ss_pred             cc---cHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh-CCCCC-----H---HhHHHHHhhccCCCCCCCCCeEEEcc
Q psy16778        119 AL---RRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA-EHFMP-----A---DLLESQFQTLEEPDPLVEPDVRTVSV  186 (433)
Q Consensus       119 ~~---~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~-~~~~~-----~---~~l~~~~~~~~~~~~~~~~~~~~Id~  186 (433)
                      +.   .....+.+++.+  ++|||++|++++.+|+..++ ++|..     .   +.+...+..+.+.|  ++ ++++|++
T Consensus        79 gg~~~~~~~~~~l~~~~--~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y--~~-ad~~id~  153 (169)
T PRK13949         79 GGAPCFFDNMELMNASG--TTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFY--RQ-AKIIFNA  153 (169)
T ss_pred             CcccCCHHHHHHHHhCC--eEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH--Hh-CCEEEEC
Confidence            63   355677887774  89999999999999997532 34331     1   13455677777776  44 6699999


Q ss_pred             C-CCHHHHHHHHhcCC
Q psy16778        187 N-EPLEGIVSKSAIMP  201 (433)
Q Consensus       187 ~-~~~ee~~~~i~~~l  201 (433)
                      + .+++++++.|.+.+
T Consensus       154 ~~~~~~e~~~~I~~~~  169 (169)
T PRK13949        154 DKLEDESQIEQLVQRL  169 (169)
T ss_pred             CCCCHHHHHHHHHHhC
Confidence            8 89999999987653

>PRK13946 shikimate kinase; Provisional

Probab=99.69  E-value=1.2e-16  Score=143.78  Aligned_cols=155  Identities=25%  Similarity=0.370  Sum_probs=111.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHH-HHHhhhCCCc
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRI-IHQLNVDNLT  112 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~  112 (433)
                      .++.|+|+|++||||||+++.|++++|++++|+|.+....      .+..+.+   ..++.+++..+.. +..+...+ .
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~------~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~-~   81 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERA------ARMTIAEIFAAYGEPEFRDLERRVIARLLKGG-P   81 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHH------hCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcC-C
Confidence            4568999999999999999999999999999999864321      1222211   2334555555444 44444444 6


Q ss_pred             EEEEcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC-----CHHhHHHHHhhccCCCCCCCCCeEEE
Q psy16778        113 GVLVCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM-----PADLLESQFQTLEEPDPLVEPDVRTV  184 (433)
Q Consensus       113 ~Vi~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~I  184 (433)
                      +||++++   ..+..++.+++..  ++|||++|++++.+|+.+|.+++.     ..+.++.+++.+++.|  .. ++++|
T Consensus        82 ~Vi~~ggg~~~~~~~r~~l~~~~--~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y--~~-~dl~i  156 (184)
T PRK13946         82 LVLATGGGAFMNEETRAAIAEKG--ISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVY--AE-ADLTV  156 (184)
T ss_pred             eEEECCCCCcCCHHHHHHHHcCC--EEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHH--Hh-CCEEE
Confidence            7777753   5677888887764  899999999999999998876542     2455667777776654  33 56888


Q ss_pred             ccC-CCHHHHHHHHhcCCCC
Q psy16778        185 SVN-EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       185 d~~-~~~ee~~~~i~~~l~~  203 (433)
                      +++ .+++++++.|.+.+..
T Consensus       157 ~~~~~~~~~~~~~i~~~i~~  176 (184)
T PRK13946        157 ASRDVPKEVMADEVIEALAA  176 (184)
T ss_pred             ECCCCCHHHHHHHHHHHHHH
Confidence            877 9999999988777654

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.68  E-value=2.8e-16  Score=134.95  Aligned_cols=158  Identities=22%  Similarity=0.312  Sum_probs=118.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhh
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNV  108 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (433)
                      ...++.+||+||.|||||||+|..|.++|   |  ..++|+|+++.     ++..+..|+.++.....+++.++++.+..
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~-----gL~~dLgFs~edR~eniRRvaevAkll~d   93 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH-----GLNRDLGFSREDRIENIRRVAEVAKLLAD   93 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh-----cccCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999998   4  45799999863     44568888888888888999999988888


Q ss_pred             CCCcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHH------HHhhCCCCCHHhHHHHHhhccCCCCCCCC
Q psy16778        109 DNLTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRL------QKRAEHFMPADLLESQFQTLEEPDPLVEP  179 (433)
Q Consensus       109 ~~~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl------~~R~~~~~~~~~l~~~~~~~~~~~~~~~~  179 (433)
                      +|-.++++.-...+..|+..++..+   ++.||++||.+++.+|-      ++|.+......       -.+.+|..-+.
T Consensus        94 aG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fT-------Gid~pYE~P~~  166 (197)
T COG0529          94 AGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFT-------GIDSPYEAPEN  166 (197)
T ss_pred             CCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCc-------CCCCCCCCCCC
Confidence            8865555555566677777776543   89999999999999884      22333222111       12223321223


Q ss_pred             CeEEEccC-CCHHHHHHHHhcCCCC
Q psy16778        180 DVRTVSVN-EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       180 ~~~~Id~~-~~~ee~~~~i~~~l~~  203 (433)
                      .++.++++ .++++.+++|.+.+..
T Consensus       167 Pel~l~t~~~~vee~v~~i~~~l~~  191 (197)
T COG0529         167 PELHLDTDRNSVEECVEQILDLLKE  191 (197)
T ss_pred             CeeEeccccCCHHHHHHHHHHHHHh
Confidence            77999998 9999999999888754

>PLN02199 shikimate kinase

Probab=99.67  E-value=2.5e-16  Score=148.25  Aligned_cols=159  Identities=16%  Similarity=0.193  Sum_probs=114.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEE
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLV  116 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~  116 (433)
                      ++..|+|+|++||||||+++.|++.+|++++|+|.+++... .+......|. ..++..|+..|..+...+....++||+
T Consensus       101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~-~G~sI~eIf~-~~GE~~FR~~E~e~L~~L~~~~~~VIS  178 (303)
T PLN02199        101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAM-NGTSVAEIFV-HHGENFFRGKETDALKKLSSRYQVVVS  178 (303)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHh-cCCCHHHHHH-HhCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            57899999999999999999999999999999999875421 0111122233 345566666666555444444578998


Q ss_pred             cCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHH--hhCCCCC-----------HHhHHHHHhhccCCCCCCCCC
Q psy16778        117 CSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQK--RAEHFMP-----------ADLLESQFQTLEEPDPLVEPD  180 (433)
Q Consensus       117 ~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~--R~~~~~~-----------~~~l~~~~~~~~~~~~~~~~~  180 (433)
                      +++   ..+..+..++. +  .+|||++|++++.+|+..  ...+|.-           .+.+...++.+.+.|  ++ +
T Consensus       179 tGGG~V~~~~n~~~L~~-G--~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~plY--~~-A  252 (303)
T PLN02199        179 TGGGAVIRPINWKYMHK-G--ISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAY--TN-A  252 (303)
T ss_pred             CCCcccCCHHHHHHHhC-C--eEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHHH--Hh-C
Confidence            877   55667777764 3  899999999999999985  2223221           245677788888887  44 7


Q ss_pred             eEEEc------------cC-CCHHHHHHHHhcCCCC
Q psy16778        181 VRTVS------------VN-EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       181 ~~~Id------------~~-~~~ee~~~~i~~~l~~  203 (433)
                      +++|+            ++ .++++++.+|...+.+
T Consensus       253 d~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~  288 (303)
T PLN02199        253 NARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLS  288 (303)
T ss_pred             CEEEecccccccccccccCCCCHHHHHHHHHHHHHH
Confidence            88888            66 8999999888776643

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.67  E-value=2.4e-15  Score=130.72  Aligned_cols=145  Identities=52%  Similarity=0.827  Sum_probs=109.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhh-hCCCcEEEEcC
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLN-VDNLTGVLVCS  118 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Vi~~~  118 (433)
                      +|+|+|++||||||+++.|++.++..+++.|.+........+..+..+.......++..+.......+ ..+.++|++++
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vVid~~   80 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVACS   80 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEEEEec
Confidence            48999999999999999999999999999999875322112233455544445566666655444433 46778999998


Q ss_pred             cccHHHHHHHHhcC--C-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEc
Q psy16778        119 ALRRNYRDIIRNNN--R-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVS  185 (433)
Q Consensus       119 ~~~~~~~~~l~~~~--~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id  185 (433)
                      .....+++.+.+..  . ..+|||+++.+++.+|+.+|.+...+.+.+..++..++++.. .+...++||
T Consensus        81 ~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~  149 (150)
T cd02021          81 ALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKGHFMPADLLDSQFETLEPPGE-DEEDVIVID  149 (150)
T ss_pred             cccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcccCCCCHHHHHHHHHHhcCCCC-CCCCeEEcc
Confidence            88888888888752  2 679999999999999999997766667788889988888764 344566665

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK00625 shikimate kinase; Provisional

Probab=99.67  E-value=3.2e-16  Score=139.02  Aligned_cols=156  Identities=19%  Similarity=0.164  Sum_probs=103.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccccc--ccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKM--SAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLV  116 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~  116 (433)
                      +.|+|+|+|||||||+++.|++++|++++|+|.+++.......  .....|. ..++..++..+..+...+.. .+.||+
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~-~~Ge~~fr~~E~~~l~~l~~-~~~VIs   78 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQ-AYGEEGFCREEFLALTSLPV-IPSIVA   78 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHH-HHCHHHHHHHHHHHHHHhcc-CCeEEE
Confidence            4799999999999999999999999999999998754211100  0111121 23455566666555444444 456777


Q ss_pred             cCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCC--CCHHhHHHHHhhccCCCCCCCCCeEEEcc-----
Q psy16778        117 CSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHF--MPADLLESQFQTLEEPDPLVEPDVRTVSV-----  186 (433)
Q Consensus       117 ~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~Id~-----  186 (433)
                      +++   ..++..+.++..  ..+|||++|++++.+|+.+|+...  ...+.+.+.+..+.+.|  ++.++++|++     
T Consensus        79 ~GGg~~~~~e~~~~l~~~--~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y--~~~ad~~i~~~~~~~  154 (173)
T PRK00625         79 LGGGTLMIEPSYAHIRNR--GLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRM--RSIADYIFSLDHVAE  154 (173)
T ss_pred             CCCCccCCHHHHHHHhcC--CEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHH--HHHCCEEEeCCCccc
Confidence            765   445556666655  389999999999999999885321  13456666777777766  4456676554     


Q ss_pred             -C-CCHHHHHHHHhcC
Q psy16778        187 -N-EPLEGIVSKSAIM  200 (433)
Q Consensus       187 -~-~~~ee~~~~i~~~  200 (433)
                       + .++.++.+.+..+
T Consensus       155 ~~~~~~~~~~~~~~~~  170 (173)
T PRK00625        155 TSSESLMRACQSFCTL  170 (173)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence             3 5555555555443

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=99.67  E-value=1.3e-16  Score=155.81  Aligned_cols=137  Identities=31%  Similarity=0.396  Sum_probs=111.5

Q ss_pred             CHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc----------------
Q psy16778        293 SIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD----------------  349 (433)
Q Consensus       293 ~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~----------------  349 (433)
                      ++|+.|....+...|-|+...+++|.+...|+.|... .+...++      ++.+.++|++.+-                
T Consensus         2 d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~~   81 (344)
T cd02922           2 DFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHPD   81 (344)
T ss_pred             hHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCch
Confidence            6899998888888999999999999999999999655 6666665      3446777776641                


Q ss_pred             -------ccccc------CCCccchHHHHHhh-CCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCch
Q psy16778        350 -------IRNKF------NMPSHLNIEELAEK-TPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRY  415 (433)
Q Consensus       350 -------~~~~~------~~~~~~s~e~i~~~-~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g~r~  415 (433)
                             .+...      +..++.|+|+|.+. .++.+.|||||+++|+..+.++++||+++||++|+||||+|+.|+|+
T Consensus        82 ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~  161 (344)
T cd02922          82 GELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRE  161 (344)
T ss_pred             HHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcch
Confidence                   11111      12356789999877 34567899999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCCCCC
Q psy16778        416 ADIRNKFNMPSHLK  429 (433)
Q Consensus       416 ~~~r~~~~~~~~~~  429 (433)
                      +|.|++|..|.+++
T Consensus       162 ~d~r~~~~~p~~~~  175 (344)
T cd02922         162 RDERLKAEEAVSDG  175 (344)
T ss_pred             hhhhhcCCcCcccc
Confidence            99999999987543

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.66  E-value=3.7e-16  Score=162.54  Aligned_cols=160  Identities=16%  Similarity=0.196  Sum_probs=118.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      .+-..|+|+|+|||||||+++.||+++|++|+|+|.++++..  ++.....|. ..++..|+..|..+...+....++||
T Consensus         4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~--g~si~eif~-~~Ge~~FR~~E~~~l~~~~~~~~~VI   80 (542)
T PRK14021          4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI--GMSIPSYFE-EYGEPAFREVEADVVADMLEDFDGIF   80 (542)
T ss_pred             CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH--CcCHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCeEE
Confidence            345689999999999999999999999999999999875422  222222333 34566677777665544433346788


Q ss_pred             EcCc---ccHHHHHHH----HhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC----HHhHHHHHhhccCCCCCCCCCeEEE
Q psy16778        116 VCSA---LRRNYRDII----RNNNRVVFIYLKAEFGVILSRLQKRAEHFMP----ADLLESQFQTLEEPDPLVEPDVRTV  184 (433)
Q Consensus       116 ~~~~---~~~~~~~~l----~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~I  184 (433)
                      ++|+   ..+..++.|    ++.  ..+|||+++++++.+|+..+.++|.-    .+.+.+.++.+++.|  ++.++++|
T Consensus        81 s~GGG~v~~~~n~~~L~~~~~~~--g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y--~~~Ad~~i  156 (542)
T PRK14021         81 SLGGGAPMTPSTQHALASYIAHG--GRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVF--RQVANVHV  156 (542)
T ss_pred             ECCCchhCCHHHHHHHHHHHhcC--CEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHH--HhhCCEEE
Confidence            8876   445666655    344  48999999999999999765544432    456777788888877  66789999


Q ss_pred             ccC-CCHHHHHHHHhcCCC
Q psy16778        185 SVN-EPLEGIVSKSAIMPP  202 (433)
Q Consensus       185 d~~-~~~ee~~~~i~~~l~  202 (433)
                      +++ .++++++++|.+.+.
T Consensus       157 ~~~~~~~~~~~~~i~~~~~  175 (542)
T PRK14021        157 HTRGLTPQAAAKKLIDMVA  175 (542)
T ss_pred             ECCCCCHHHHHHHHHHHHH
Confidence            998 899999999888764

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.64  E-value=8.6e-16  Score=136.73  Aligned_cols=157  Identities=27%  Similarity=0.408  Sum_probs=105.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHH-HHHHHhhhCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNIN-RIIHQLNVDN  110 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~  110 (433)
                      +++++.|+|+|++||||||+|+.|++.+|+.++|.|.+....      .|....+   ..+...+...+ ..+..+....
T Consensus         1 ~~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~------~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~   74 (175)
T PRK00131          1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEAR------AGKSIPEIFEEEGEAAFRELEEEVLAELLARH   74 (175)
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHH------cCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcC
Confidence            467889999999999999999999999999999999876431      1222111   11223333333 3444444333


Q ss_pred             CcEEEEcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC-----CHHhHHHHHhhccCCCCCCCCCeE
Q psy16778        111 LTGVLVCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM-----PADLLESQFQTLEEPDPLVEPDVR  182 (433)
Q Consensus       111 ~~~Vi~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~  182 (433)
                       ++||.+++   .....+..++..  ..+|||++|++++.+|+.+|.+++.     ..+.+...+..+...+  ...+++
T Consensus        75 -~~vi~~g~~~~~~~~~r~~l~~~--~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~dl  149 (175)
T PRK00131         75 -NLVISTGGGAVLREENRALLRER--GTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLY--EEVADI  149 (175)
T ss_pred             -CCEEEeCCCEeecHHHHHHHHhC--CEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHH--HhhcCe
Confidence             45665543   345667777554  4899999999999999988764322     1233444454444433  344679


Q ss_pred             EEccC-CCHHHHHHHHhcCCC
Q psy16778        183 TVSVN-EPLEGIVSKSAIMPP  202 (433)
Q Consensus       183 ~Id~~-~~~ee~~~~i~~~l~  202 (433)
                      +|+++ .+++++++.|.+.+.
T Consensus       150 ~idt~~~~~~e~~~~I~~~v~  170 (175)
T PRK00131        150 TVETDGRSPEEVVNEILEKLE  170 (175)
T ss_pred             EEeCCCCCHHHHHHHHHHHHH
Confidence            99988 999999999887764

>PRK13947 shikimate kinase; Provisional

Probab=99.63  E-value=4.3e-15  Score=132.07  Aligned_cols=149  Identities=21%  Similarity=0.272  Sum_probs=103.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCC---CcCChhHHHHHHHHHHHhhhCCCcEEEE
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLN---DEDRRPWLNNINRIIHQLNVDNLTGVLV  116 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Vi~  116 (433)
                      .|+|+|+|||||||+++.||+.+|++++|.|.+....      .|....   ...++..++..+..+...+.....+||+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~------~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~   76 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM------TGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIA   76 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh------cCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEE
Confidence            6999999999999999999999999999999986442      122221   1233455665555444444444467777


Q ss_pred             cCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC-----HHhHHHHHhhccCCCCCCCCCeEEEccC-
Q psy16778        117 CSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP-----ADLLESQFQTLEEPDPLVEPDVRTVSVN-  187 (433)
Q Consensus       117 ~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~Id~~-  187 (433)
                      +++   ........+.+.+  .+|||+++++.+.+|+..|..++..     ...+...+..+.+.+   +.++++|+++ 
T Consensus        77 ~g~g~vl~~~~~~~l~~~~--~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y---~~ad~~Idt~~  151 (171)
T PRK13947         77 TGGGVVLNPENVVQLRKNG--VVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFY---DFADYTIDTGD  151 (171)
T ss_pred             CCCCCcCCHHHHHHHHhCC--EEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHH---HhcCEEEECCC
Confidence            665   4455667777664  7999999999999999877654331     223333344444333   1257889987 


Q ss_pred             CCHHHHHHHHhc
Q psy16778        188 EPLEGIVSKSAI  199 (433)
Q Consensus       188 ~~~ee~~~~i~~  199 (433)
                      .+++++++.|.+
T Consensus       152 ~~~~~i~~~I~~  163 (171)
T PRK13947        152 MTIDEVAEEIIK  163 (171)
T ss_pred             CCHHHHHHHHHH
Confidence            999999999887

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.62  E-value=1.8e-14  Score=128.65  Aligned_cols=160  Identities=13%  Similarity=0.076  Sum_probs=105.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCe--EEeCCCCCcccccccc--ccCCCCCC-------cCChhHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVK--FIDGDHLHPQSNIDKM--SAKQPLND-------EDRRPWLNNINRIIHQ  105 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~--~id~D~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~~~~  105 (433)
                      ++.+|+|+|+|||||||+++.|++.++..  +++.|.+.........  ..++.+..       +.....+......+..
T Consensus         1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~   80 (175)
T cd00227           1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAA   80 (175)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHH
Confidence            46799999999999999999999998654  4577766432110000  00111111       1111234455566777


Q ss_pred             hhhCCCcEEEEcCcc-cHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeE
Q psy16778        106 LNVDNLTGVLVCSAL-RRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVR  182 (433)
Q Consensus       106 ~~~~~~~~Vi~~~~~-~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  182 (433)
                      ++.+|.++|++.... ....++.+.....  +..||++||.+++.+|+.+|++..  ......+....+.+..    .++
T Consensus        81 ~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~--~~~~~~~~~~~~~~~~----~dl  154 (175)
T cd00227          81 MARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRV--PGQARKQARVVHAGVE----YDL  154 (175)
T ss_pred             HHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCcc--chHHHHHHHHhcCCCc----ceE
Confidence            888999999997765 4555555554432  689999999999999999997432  2223333443443321    579


Q ss_pred             EEccC-CCHHHHHHHHhcCCC
Q psy16778        183 TVSVN-EPLEGIVSKSAIMPP  202 (433)
Q Consensus       183 ~Id~~-~~~ee~~~~i~~~l~  202 (433)
                      +||++ .+++|.+++|++.++
T Consensus       155 ~iDts~~s~~e~a~~i~~~l~  175 (175)
T cd00227         155 EVDTTHKTPIECARAIAARVQ  175 (175)
T ss_pred             EEECCCCCHHHHHHHHHHhcC
Confidence            99998 789999999988764

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.61  E-value=4.1e-15  Score=132.24  Aligned_cols=153  Identities=21%  Similarity=0.317  Sum_probs=106.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCC---CCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPL---NDEDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      ..|+|+|++||||||+++.|++++|++++|.|.+.....      +...   ....++..++..+..+...+..+ .+||
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~------g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~-~~vi   75 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS------NMTVAEIVEREGWAGFRARESAALEAVTAP-STVI   75 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh------CCCHHHHHHHHCHHHHHHHHHHHHHHhcCC-CeEE
Confidence            579999999999999999999999999999998864321      2111   11234555655555444444443 5677


Q ss_pred             EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCC---CC-----CHHhHHHHHhhccCCCCCCCCCeEEE
Q psy16778        116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH---FM-----PADLLESQFQTLEEPDPLVEPDVRTV  184 (433)
Q Consensus       116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~---~~-----~~~~l~~~~~~~~~~~~~~~~~~~~I  184 (433)
                      ++++   .....++++++..  ++|||+++++++.+|+.+|...   +.     ..+.+...++.+.+.|  .+.+.++|
T Consensus        76 ~~ggg~vl~~~~~~~l~~~~--~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y--~~~a~~~I  151 (171)
T PRK03731         76 ATGGGIILTEENRHFMRNNG--IVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALY--REVAHHII  151 (171)
T ss_pred             ECCCCccCCHHHHHHHHhCC--EEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHH--HHhCCEEE
Confidence            7764   4566778887764  8999999999999999876421   11     1233444444444443  33466999


Q ss_pred             ccCCCHHHHHHHHhcCCC
Q psy16778        185 SVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       185 d~~~~~ee~~~~i~~~l~  202 (433)
                      |++.+++++.+++...+.
T Consensus       152 d~~~~~e~v~~~i~~~l~  169 (171)
T PRK03731        152 DATQPPSQVVSEILSALA  169 (171)
T ss_pred             cCCCCHHHHHHHHHHHHh
Confidence            998999999999887664

>PRK06762 hypothetical protein; Provisional

Probab=99.61  E-value=9.3e-15  Score=129.32  Aligned_cols=154  Identities=18%  Similarity=0.173  Sum_probs=106.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEE
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL--GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGV  114 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  114 (433)
                      ++++|+|+|++||||||+++.|++.+  ++.+++.|.+....     ..+..  .+. ......+...+...+..+..+|
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l-----~~~~~--~~~-~~~~~~~~~~~~~~~~~g~~vi   72 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM-----LRVKD--GPG-NLSIDLIEQLVRYGLGHCEFVI   72 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh-----ccccC--CCC-CcCHHHHHHHHHHHHhCCCEEE
Confidence            46899999999999999999999998  67788888875321     11111  111 1122334444445556777777


Q ss_pred             EEcCcccHHHHHHHH----hcCC-eEEEEEEcCHHHHHHHHHHhhC-CCCCHHhHHHHHhhccCCCCCCCCCeEEEccC-
Q psy16778        115 LVCSALRRNYRDIIR----NNNR-VVFIYLKAEFGVILSRLQKRAE-HFMPADLLESQFQTLEEPDPLVEPDVRTVSVN-  187 (433)
Q Consensus       115 i~~~~~~~~~~~~l~----~~~~-~~vv~L~~~~e~l~~Rl~~R~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~-  187 (433)
                      ++.......+++.++    .... +.+|||++|.+++.+|..+|.. +..+.+.++.++..++.++.    ++.+++++ 
T Consensus        73 ld~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~  148 (166)
T PRK06762         73 LEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHDTLGV----IGETIFTDN  148 (166)
T ss_pred             EchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcCCcCC----CCeEEecCC
Confidence            876654444443333    2222 6899999999999999999965 34567788888888887642    44566665 


Q ss_pred             CCHHHHHHHHhcCCC
Q psy16778        188 EPLEGIVSKSAIMPP  202 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~  202 (433)
                      .++++++++|...+.
T Consensus       149 ~~~~~v~~~i~~~~~  163 (166)
T PRK06762        149 LSLKDIFDAILTDIG  163 (166)
T ss_pred             CCHHHHHHHHHHHhc
Confidence            899999999987654

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=99.58  E-value=7.3e-16  Score=135.28  Aligned_cols=148  Identities=24%  Similarity=0.305  Sum_probs=99.9

Q ss_pred             CCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCc---ccHH
Q psy16778         47 SGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSA---LRRN  123 (433)
Q Consensus        47 ~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~---~~~~  123 (433)
                      |||||||+++.||+.||++|+|+|.++.....  +..+..+... ++..|+..+..+...+....++||++|+   ..+.
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g--~si~~i~~~~-G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~   77 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG--MSISEIFAEE-GEEAFRELESEALRELLKENNCVIACGGGIVLKEE   77 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT--SHHHHHHHHH-HHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHH
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC--CcHHHHHHcC-ChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHH
Confidence            79999999999999999999999998754221  2222233322 3455555555554444444488998855   6688


Q ss_pred             HHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCH--H---hHHHHHhhccCCCCCCCCCeEEEccC-CCHHHHHHHH
Q psy16778        124 YRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPA--D---LLESQFQTLEEPDPLVEPDVRTVSVN-EPLEGIVSKS  197 (433)
Q Consensus       124 ~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~--~---~l~~~~~~~~~~~~~~~~~~~~Id~~-~~~ee~~~~i  197 (433)
                      +++.|++.+  .+|||+++++++.+|+..+..+|...  .   .....+..+.+.|  ...++++++++ .++++++.+|
T Consensus        78 ~~~~L~~~g--~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y--~~~a~~~v~~~~~~~~~i~~~i  153 (158)
T PF01202_consen   78 NRELLKENG--LVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLY--EQAADIVVDTDGSPPEEIAEEI  153 (158)
T ss_dssp             HHHHHHHHS--EEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHH--HHHSSEEEETSSCHHHHHHHHH
T ss_pred             HHHHHHhCC--EEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHH--HhcCeEEEeCCCCCHHHHHHHH
Confidence            889999664  89999999999999998887643321  1   2223333444444  44588999999 5559999988


Q ss_pred             hcCC
Q psy16778        198 AIMP  201 (433)
Q Consensus       198 ~~~l  201 (433)
                      .+.+
T Consensus       154 ~~~l  157 (158)
T PF01202_consen  154 LEFL  157 (158)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7643

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.58  E-value=6.8e-15  Score=126.96  Aligned_cols=109  Identities=26%  Similarity=0.378  Sum_probs=85.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNL  111 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (433)
                      +|.+|+|+|.|||||||+|+.|.++|     ...++|+|.+...     +..+..|+.++.....+++.++...+..+|.
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~-----l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~   75 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG-----LNADLGFSKEDREENIRRIAEVAKLLADQGI   75 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT-----TTTT--SSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc-----cCCCCCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999999998     4568999988632     3446667777778888888888888889998


Q ss_pred             cEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHH
Q psy16778        112 TGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRL  150 (433)
Q Consensus       112 ~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl  150 (433)
                      .+|++.....++.|+.+++..+   ++.|||+||.+++.+|.
T Consensus        76 ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD  117 (156)
T PF01583_consen   76 IVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD  117 (156)
T ss_dssp             EEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred             eEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence            8888888888888888877643   78999999999999994

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.53  E-value=4.4e-14  Score=119.77  Aligned_cols=156  Identities=21%  Similarity=0.191  Sum_probs=100.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCc----CChhHHH-HHHHHHHHhhhCCCcE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDE----DRRPWLN-NINRIIHQLNVDNLTG  113 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~  113 (433)
                      |+|.|.|+|||||||+++.||+++|+.+++++.++++.   ....|+.+.+.    ...+..+ .+.........+ .++
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~---A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~-~nv   76 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREM---ARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKE-GNV   76 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHH---HHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHc-CCe
Confidence            57999999999999999999999999999999987652   33457766541    1112222 233344444443 356


Q ss_pred             EEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC------HHhHHHHHhhccCCCC----CCCCCeEE
Q psy16778        114 VLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP------ADLLESQFQTLEEPDP----LVEPDVRT  183 (433)
Q Consensus       114 Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~------~~~l~~~~~~~~~~~~----~~~~~~~~  183 (433)
                      |+.+-  ...   ++.+....+.|||.+|.+++.+|+.+|.+....      .++-+...+++.+.|.    +-...+++
T Consensus        77 Vlegr--LA~---Wi~k~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLV  151 (179)
T COG1102          77 VLEGR--LAG---WIVREYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDLV  151 (179)
T ss_pred             EEhhh--hHH---HHhccccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEE
Confidence            65321  122   222211168999999999999999999864432      1112223334443333    24457899


Q ss_pred             EccC-CCHHHHHHHHhcCCCC
Q psy16778        184 VSVN-EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       184 Id~~-~~~ee~~~~i~~~l~~  203 (433)
                      ||+. .+++++..-+...+..
T Consensus       152 inTs~~~~~~v~~il~~aid~  172 (179)
T COG1102         152 INTSKWDPEEVFLILLDAIDA  172 (179)
T ss_pred             EecccCCHHHHHHHHHHHHHh
Confidence            9998 8888888777665543

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.53  E-value=4.2e-14  Score=126.37  Aligned_cols=161  Identities=18%  Similarity=0.155  Sum_probs=97.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVD  109 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (433)
                      ..+|..|+|+|++||||||+++.|+++++     ..++++|.+.....    ..+  +.....................+
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~----~~~--~~~~~~~~~~~~~~~l~~~l~~~   77 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG----HYG--YDKQSRIEMALKRAKLAKFLADQ   77 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC----CCC--CCHHHHHHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999884     77888887643110    111  11111111112222222223356


Q ss_pred             CCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccC-
Q psy16778        110 NLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVN-  187 (433)
Q Consensus       110 ~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~-  187 (433)
                      |..+|+++++..+..++..+.... ..+|||+++++++.+|+..+--.....+.++..+..+.+.+  ...++++|+++ 
T Consensus        78 g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~--~~~Ad~vI~~~~  155 (176)
T PRK05541         78 GMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFD--EPKADLVIDNSC  155 (176)
T ss_pred             CCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCccc--CCCCCEEEeCCC
Confidence            666777766544444444444333 57999999999999998532000011122333344444444  33478999998 


Q ss_pred             -CCHHHHHHHHhcCCCC
Q psy16778        188 -EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       188 -~~~ee~~~~i~~~l~~  203 (433)
                       .++++.++.+.+.+..
T Consensus       156 ~~~~~~~v~~i~~~l~~  172 (176)
T PRK05541        156 RTSLDEKVDLILNKLKL  172 (176)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence             4899988888766544

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.53  E-value=1.3e-13  Score=123.21  Aligned_cols=160  Identities=22%  Similarity=0.280  Sum_probs=105.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN  110 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (433)
                      .+|.+|+|+|+|||||||+++.|++.+   |  +.++++|.+...     +..+..+.......+++.+..+.......|
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~-----~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g   76 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTN-----LSKGLGFSKEDRDTNIRRIGFVANLLTRHG   76 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHH-----HhcCCCCChhhHHHHHHHHHHHHHHHHhCC
Confidence            467899999999999999999999988   2  678999977422     223445555555566666555554445567


Q ss_pred             CcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCC--HHhHHHHHhhccCCCCCCCCCeEEEccC
Q psy16778        111 LTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMP--ADLLESQFQTLEEPDPLVEPDVRTVSVN  187 (433)
Q Consensus       111 ~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~Id~~  187 (433)
                      ..+++++......+++.+.+... +.+|||+++.+++.+|. .|+ ....  .+.+...+....+.|. ...++++|+++
T Consensus        77 ~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~-~~~-l~~~~~~~~i~~~~~~~~~~~~-p~~ad~~i~~~  153 (175)
T PRK00889         77 VIVLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRD-VKG-LYAKARAGEIKHFTGIDDPYEP-PLNPEVECRTD  153 (175)
T ss_pred             CEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhC-ccc-HHHHHHcCCCCCCcccCCCCCC-CCCCcEEEECC
Confidence            66666666555667777766544 68999999999999995 111 0000  0111222222333321 13377888887


Q ss_pred             -CCHHHHHHHHhcCCCC
Q psy16778        188 -EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       188 -~~~ee~~~~i~~~l~~  203 (433)
                       .++++++++|.+.+..
T Consensus       154 ~~~~~~~~~~i~~~l~~  170 (175)
T PRK00889        154 LESLEESVDKVLQKLEE  170 (175)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence             8999999999887743

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.53  E-value=1.8e-14  Score=140.10  Aligned_cols=161  Identities=17%  Similarity=0.207  Sum_probs=110.5

Q ss_pred             CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHH-HHHHh
Q psy16778         31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINR-IIHQL  106 (433)
Q Consensus        31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~  106 (433)
                      ....++++..|+|+|++||||||+++.|++++|++++|.|..+...      .|....+   ..++..++.++. .+..+
T Consensus       126 ~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~------~G~~i~ei~~~~G~~~fr~~e~~~l~~l  199 (309)
T PRK08154        126 AGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIERE------AGLSVSEIFALYGQEGYRRLERRALERL  199 (309)
T ss_pred             hhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHH------hCCCHHHHHHHHCHHHHHHHHHHHHHHH
Confidence            3445688899999999999999999999999999999999775431      2332221   123444544444 34444


Q ss_pred             hhCCCcEEEEcCccc---HHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCC-C-----CCHHhHHHHHhhccCCCCCC
Q psy16778        107 NVDNLTGVLVCSALR---RNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH-F-----MPADLLESQFQTLEEPDPLV  177 (433)
Q Consensus       107 ~~~~~~~Vi~~~~~~---~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~-~-----~~~~~l~~~~~~~~~~~~~~  177 (433)
                      +.....+||.+++..   +.....+...  +++|||++|++++.+|+.+|.+. +     ...+.+...+..+.++|.  
T Consensus       200 l~~~~~~VI~~Ggg~v~~~~~~~~l~~~--~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~--  275 (309)
T PRK08154        200 IAEHEEMVLATGGGIVSEPATFDLLLSH--CYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYA--  275 (309)
T ss_pred             HhhCCCEEEECCCchhCCHHHHHHHHhC--CEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHH--
Confidence            444445788776632   2333344444  48999999999999999887531 2     113556666666666552  


Q ss_pred             CCCeEEEccC-CCHHHHHHHHhcCCC
Q psy16778        178 EPDVRTVSVN-EPLEGIVSKSAIMPP  202 (433)
Q Consensus       178 ~~~~~~Id~~-~~~ee~~~~i~~~l~  202 (433)
                       .++++|+++ .+++++++.|...+.
T Consensus       276 -~ad~~I~t~~~s~ee~~~~I~~~l~  300 (309)
T PRK08154        276 -RADAVVDTSGLTVAQSLARLRELVR  300 (309)
T ss_pred             -hCCEEEECCCCCHHHHHHHHHHHHH
Confidence             267899998 799999999877654

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.53  E-value=3.3e-14  Score=123.92  Aligned_cols=145  Identities=25%  Similarity=0.350  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCc
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSA  119 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~  119 (433)
                      .|+|+|++||||||+++.|++.+|+.+++.|.+.....  +......++ ..++..++..+..+...+.....+||++++
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~--~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~   77 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRA--GMSIPEIFA-EEGEEGFRELEREVLLLLLTKENAVIATGG   77 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHc--CCCHHHHHH-HHCHHHHHHHHHHHHHHHhccCCcEEECCC
Confidence            38999999999999999999999999999998864321  100010111 123334444444333333333467777654


Q ss_pred             ---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC----HHhHHHHHhhccCCCCCCCCCeEEEccC-CCHH
Q psy16778        120 ---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP----ADLLESQFQTLEEPDPLVEPDVRTVSVN-EPLE  191 (433)
Q Consensus       120 ---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~Id~~-~~~e  191 (433)
                         .....++.+...  .++|||++|++++.+|+.+|..++..    .+.+...+..+.+.|  ++.++++|+++ .+++
T Consensus        78 ~~i~~~~~~~~~~~~--~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~~Y--~~~ad~~i~~~~~~~~  153 (154)
T cd00464          78 GAVLREENRRLLLEN--GIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEEREPLY--REVADLTIDTDELSPE  153 (154)
T ss_pred             CccCcHHHHHHHHcC--CeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHH--HHhCcEEEECCCCCCC
Confidence               333334555554  48999999999999999888644332    235666666666665  55688999987 5543

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.52  E-value=2.9e-13  Score=121.84  Aligned_cols=160  Identities=19%  Similarity=0.301  Sum_probs=110.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhh
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNV  108 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (433)
                      ..++|.+|+|+|++||||||+++.|++.+   |  ..++++|.+...     +..+..+........+..+......+..
T Consensus        14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (184)
T TIGR00455        14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHG-----LNKDLGFSEEDRKENIRRIGEVAKLFVR   88 (184)
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhh-----hccccCCCHHHHHHHHHHHHHHHHHHHc
Confidence            34778999999999999999999999987   3  568888887532     2223444444555566666666777778


Q ss_pred             CCCcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHHHHhhCCCC--CHHhHHHHHhhccCCCCCCCCCeEE
Q psy16778        109 DNLTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRLQKRAEHFM--PADLLESQFQTLEEPDPLVEPDVRT  183 (433)
Q Consensus       109 ~~~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl~~R~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~  183 (433)
                      +|..+|+++......+++.++....   +.+|||++|.+++.+|.. ++ ...  ..+.+... .....+|+.-+.++++
T Consensus        89 ~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~-~~-l~~~~~~~~~~~l-~~~~~~y~~p~~adl~  165 (184)
T TIGR00455        89 NGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDP-KG-LYKKARNGEIKGF-TGIDSPYEAPENPEVV  165 (184)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCc-hh-HHHHHhcCCccCc-ccccCCCCCCCCCcEE
Confidence            8989999998888888888877654   678999999999999932 10 000  00011111 1112222111458899


Q ss_pred             EccC-CCHHHHHHHHhcCC
Q psy16778        184 VSVN-EPLEGIVSKSAIMP  201 (433)
Q Consensus       184 Id~~-~~~ee~~~~i~~~l  201 (433)
                      |+++ .++++++++|...|
T Consensus       166 Idt~~~~~~~~~~~i~~~l  184 (184)
T TIGR00455       166 LDTDQNDREECVGQIIEKL  184 (184)
T ss_pred             EECCCCCHHHHHHHHHHhC
Confidence            9998 79999999887643

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.52  E-value=1.1e-13  Score=134.51  Aligned_cols=156  Identities=17%  Similarity=0.168  Sum_probs=103.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEE
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLV  116 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~  116 (433)
                      +.+|+|+|+|||||||+++.|++++ ++.+++.|.+...........++.+...............+...+..+.++|++
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid   81 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIIS   81 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence            4789999999999999999999999 999999999753311111011122221111111223344455566678889999


Q ss_pred             cCcccHHHHHHHHh----cCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCC---------CCCCCeE
Q psy16778        117 CSALRRNYRDIIRN----NNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDP---------LVEPDVR  182 (433)
Q Consensus       117 ~~~~~~~~~~~l~~----~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~  182 (433)
                      ++......++.+.+    ... +.+|||+++.+++.+|+.+|+++..+.+.+..++.+++.+..         ..+...+
T Consensus        82 ~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~  161 (300)
T PHA02530         82 DTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERAVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAV  161 (300)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCCCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEE
Confidence            98877666654433    322 567999999999999999997777788888877766665421         0123456


Q ss_pred             EEccCCCHHHH
Q psy16778        183 TVSVNEPLEGI  193 (433)
Q Consensus       183 ~Id~~~~~ee~  193 (433)
                      .+|.+.++.+.
T Consensus       162 ~~D~dgtl~~~  172 (300)
T PHA02530        162 IFDIDGTLAKM  172 (300)
T ss_pred             EEECCCcCcCC
Confidence            66666665544

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.52  E-value=2.1e-13  Score=124.28  Aligned_cols=159  Identities=16%  Similarity=0.252  Sum_probs=104.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVD  109 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (433)
                      ..++..|+|+|++||||||+++.|++.+     |..++++|++.....     ....+..+.....++.+...+.....+
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~-----~~~~~~~~~~~~~~~~l~~~a~~~~~~   95 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLC-----SDLGFSDADRKENIRRVGEVAKLMVDA   95 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhh-----hcCCcCcccHHHHHHHHHHHHHHHhhC
Confidence            4678999999999999999999999987     468899988753211     112233333455666666666666677


Q ss_pred             CCcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHHHHhhCCCCC--HHhHHHHHhhccCCCCCC--CCCeE
Q psy16778        110 NLTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRLQKRAEHFMP--ADLLESQFQTLEEPDPLV--EPDVR  182 (433)
Q Consensus       110 ~~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~~~~~~~~--~~~~~  182 (433)
                      |..+|.++......+|+.+++...   +++|||++|.+++.+|.. |+ ....  .+.+...+. ...+|  +  +.+++
T Consensus        96 G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~-r~-l~~~~~~~~~~~l~~-~r~~Y--~~p~~ad~  170 (198)
T PRK03846         96 GLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDP-KG-LYKKARAGEIRNFTG-IDSVY--EAPESPEI  170 (198)
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCc-hh-HHHHhhcCCccCccc-ccccC--CCCCCCCE
Confidence            766666666556777777776543   458999999999999921 11 0000  011111111 22223  3  44789


Q ss_pred             EEccC-CCHHHHHHHHhcCCCC
Q psy16778        183 TVSVN-EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       183 ~Id~~-~~~ee~~~~i~~~l~~  203 (433)
                      +|+++ .++++++++|.+.+..
T Consensus       171 ~Idt~~~~~~~vv~~Il~~l~~  192 (198)
T PRK03846        171 HLDTGEQLVTNLVEQLLDYLRQ  192 (198)
T ss_pred             EEECCCCCHHHHHHHHHHHHHH
Confidence            99987 8999999999887654

>PRK14531 adenylate kinase; Provisional

Probab=99.51  E-value=7.5e-14  Score=125.55  Aligned_cols=158  Identities=13%  Similarity=0.163  Sum_probs=100.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccccc----------ccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKM----------SAKQPLNDEDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (433)
                      .+.|+|+|+|||||||+++.|++.+|+.+++++++.+.......          ..|....+   .-....+.+.+... 
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d---~l~~~~~~~~l~~~-   77 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSD---ALVLAIVESQLKAL-   77 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhhc-
Confidence            45799999999999999999999999999999888643211110          01111100   01111122222221 


Q ss_pred             hCCCcEEEEcCcccHHHHHHHHh----cC-C-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccC-------CC
Q psy16778        108 VDNLTGVLVCSALRRNYRDIIRN----NN-R-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEE-------PD  174 (433)
Q Consensus       108 ~~~~~~Vi~~~~~~~~~~~~l~~----~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~-------~~  174 (433)
                       .+.++||++.+.+....+.+.+    .. . ..+++|++|++++.+|+..|+......+.+...+..++.       .|
T Consensus        78 -~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y  156 (183)
T PRK14531         78 -NSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHY  156 (183)
T ss_pred             -cCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             3457899888776665554433    22 1 569999999999999999986544444555444444432       11


Q ss_pred             CCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        175 PLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       175 ~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      . ...-.+.||.+.+++++...+...+
T Consensus       157 ~-~~~~~~~id~~~~~~~v~~~i~~~l  182 (183)
T PRK14531        157 R-QRGLLQSVEAQGSIEAITERIEKVL  182 (183)
T ss_pred             H-hcCCEEEEECCCCHHHHHHHHHHHh
Confidence            1 2234688888899999999887654

>PRK14530 adenylate kinase; Provisional

Probab=99.50  E-value=4e-13  Score=124.06  Aligned_cols=166  Identities=14%  Similarity=0.125  Sum_probs=103.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccccc-ccCCCCCCc------CChhHHHHHHHHHHHhhhC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKM-SAKQPLNDE------DRRPWLNNINRIIHQLNVD  109 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  109 (433)
                      +++.|+|+|+|||||||+++.|++++|+.|++++++......... ..+..+...      .....-.....++...+..
T Consensus         2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~   81 (215)
T PRK14530          2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSD   81 (215)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            456899999999999999999999999999999998754221000 000000000      0000001233344444444


Q ss_pred             CCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCC-------------------------------
Q psy16778        110 NLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHF-------------------------------  157 (433)
Q Consensus       110 ~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~-------------------------------  157 (433)
                      ..++|+++.+......+.+.+... ..+|||++|.+++.+|+..|...+                               
T Consensus        82 ~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl~~R~d  161 (215)
T PRK14530         82 ADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDD  161 (215)
T ss_pred             CCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcccCCCC
Confidence            567899976666666666655333 689999999999999998885211                               


Q ss_pred             CCHHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        158 MPADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       158 ~~~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                      ...+.+...+..|..       .|. .....+.||.+.+++++.+.+...+.+
T Consensus       162 D~~e~i~~Rl~~y~~~~~~v~~~y~-~~~~~~~id~~~~~~~v~~~i~~~l~~  213 (215)
T PRK14530        162 DTEETVRERLDVFEENTEPVIEHYR-DQGVLVEVDGEQTPDEVWADIQDAIDD  213 (215)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH-hCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence            113334444444432       111 112456788888999988888776644

>PRK03839 putative kinase; Provisional

Probab=99.49  E-value=1.9e-13  Score=122.54  Aligned_cols=152  Identities=19%  Similarity=0.210  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCS  118 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~  118 (433)
                      |+|+|+|+|||||||+++.|++++|++|+++|++.....     .+..+... ....++.++..+.... .+.++|+++.
T Consensus         1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~-----~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~vIidG~   73 (180)
T PRK03839          1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKG-----IGEEKDDE-MEIDFDKLAYFIEEEF-KEKNVVLDGH   73 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcC-----CcccCChh-hhcCHHHHHHHHHHhc-cCCCEEEEec
Confidence            479999999999999999999999999999999875421     12222221 2234555655555433 3446777653


Q ss_pred             cccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC-HHhHHHHHhhc--cCCCCCCCCCeEEEccC-CCHHHHH
Q psy16778        119 ALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP-ADLLESQFQTL--EEPDPLVEPDVRTVSVN-EPLEGIV  194 (433)
Q Consensus       119 ~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~-~~~l~~~~~~~--~~~~~~~~~~~~~Id~~-~~~ee~~  194 (433)
                      .      ..+...  ..+|||+++++++.+|+.+|...... .+.....+...  .+.+. .....++||++ .+++++.
T Consensus        74 ~------~~l~~~--~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~Id~~~~s~eev~  144 (180)
T PRK03839         74 L------SHLLPV--DYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALE-EKEKVIEVDTTGKTPEEVV  144 (180)
T ss_pred             c------ccccCC--CEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-hcCCEEEEECCCCCHHHHH
Confidence            2      112222  47899999999999999888521100 11111111110  01111 12256889997 7999999


Q ss_pred             HHHhcCCCCCCC
Q psy16778        195 SKSAIMPPTRAP  206 (433)
Q Consensus       195 ~~i~~~l~~~~~  206 (433)
                      .+|.+.+....+
T Consensus       145 ~~I~~~l~~~~~  156 (180)
T PRK03839        145 EEILELIKSGKK  156 (180)
T ss_pred             HHHHHHHhcCCC
Confidence            999888766433

>PLN02200 adenylate kinase family protein

Probab=99.48  E-value=2.1e-13  Score=127.12  Aligned_cols=166  Identities=13%  Similarity=0.157  Sum_probs=103.8

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccc----------cCCCCCCcCChhHHHHHHH
Q psy16778         32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMS----------AKQPLNDEDRRPWLNNINR  101 (433)
Q Consensus        32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  101 (433)
                      .+..+.+.+|+|+|+|||||||+++.|++++|+.|++.+++.+........          .|....+   ......+.+
T Consensus        37 ~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~---e~~~~~l~~  113 (234)
T PLN02200         37 SSKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPS---EVTVKLIQK  113 (234)
T ss_pred             CccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcH---HHHHHHHHH
Confidence            334566789999999999999999999999999999998886432111000          0111100   111112222


Q ss_pred             HHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHHHHhhC-CCC-CHHhHHHHHhhccCC---
Q psy16778        102 IIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRLQKRAE-HFM-PADLLESQFQTLEEP---  173 (433)
Q Consensus       102 ~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl~~R~~-~~~-~~~~l~~~~~~~~~~---  173 (433)
                      .+..  ..+.++||++.+....++..+.+...   ..+++|+++++++.+|+.+|.. +.. ..+.+...++.+...   
T Consensus       114 ~l~~--~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~p  191 (234)
T PLN02200        114 EMES--SDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLP  191 (234)
T ss_pred             HHhc--CCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            2221  12356899987776666665554321   6899999999999999998852 222 233443333332221   


Q ss_pred             ----CCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        174 ----DPLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       174 ----~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                          |. .....+.||.+.+++++.+.+.+.+..
T Consensus       192 v~~~y~-~~~~~~~IDa~~~~eeV~~~v~~~l~~  224 (234)
T PLN02200        192 VIDYYS-KKGKLYTINAVGTVDEIFEQVRPIFAA  224 (234)
T ss_pred             HHHHHH-hcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence                11 122468899889999999998877543

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.48  E-value=2.4e-13  Score=139.32  Aligned_cols=145  Identities=17%  Similarity=0.265  Sum_probs=103.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      |.|+|+|++||||||+++.|++++|++++|+|.+..+.      .|....+   ..++.+++..+..+...+......||
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~------~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vi   74 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR------EGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVV   74 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH------cCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEE
Confidence            47999999999999999999999999999999986442      2322221   23456666666655544433446888


Q ss_pred             EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC---HHhHHHHHhhccCCCCCCCCCeEEEccC-C
Q psy16778        116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP---ADLLESQFQTLEEPDPLVEPDVRTVSVN-E  188 (433)
Q Consensus       116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~Id~~-~  188 (433)
                      ++++   ....+++.+++.   .+|||+++++++.+|+..+ ++|..   .+.+...++.+.+.|.  +  ..+|+++ .
T Consensus        75 s~Gggvv~~~~~r~~l~~~---~vI~L~as~e~l~~Rl~~~-~RPLl~~~~e~l~~L~~~R~~lY~--~--~~~IDt~~~  146 (488)
T PRK13951         75 ATGGGVVIDPENRELLKKE---KTLFLYAPPEVLMERVTTE-NRPLLREGKERIREIWERRKQFYT--E--FRGIDTSKL  146 (488)
T ss_pred             ECCCccccChHHHHHHhcC---eEEEEECCHHHHHHHhccC-CCCCccccHHHHHHHHHHHHHHHh--c--ccEEECCCC
Confidence            8875   456778888764   5899999999999999765 34432   2456667777777663  2  2578887 7


Q ss_pred             CHHHHHHHH
Q psy16778        189 PLEGIVSKS  197 (433)
Q Consensus       189 ~~ee~~~~i  197 (433)
                      ++++.+.++
T Consensus       147 s~~e~~~~i  155 (488)
T PRK13951        147 NEWETTALV  155 (488)
T ss_pred             CHHHHHHHH
Confidence            787776665

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.47  E-value=8.6e-13  Score=119.02  Aligned_cols=156  Identities=13%  Similarity=0.147  Sum_probs=94.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHH---------------
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR---------------  101 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  101 (433)
                      +|.+|+|+|+|||||||+++.|++.++..+++.|..............+.   ...+.+++.++.               
T Consensus         1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~yg   77 (186)
T PRK10078          1 MGKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIA---LSEQEFFTRAGQNLFALSWHANGLYYG   77 (186)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhhee---EcHHHHHHHHHCCchhhHHHHhCCccC
Confidence            36789999999999999999999988878887776654321111111111   111222222111               


Q ss_pred             ---HHHHhhhCCCcEEEEcCcccHHHHHHHHhc-CC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCC
Q psy16778        102 ---IIHQLNVDNLTGVLVCSALRRNYRDIIRNN-NR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPL  176 (433)
Q Consensus       102 ---~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~-~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~  176 (433)
                         .+...+..+.++|++++.   ...+.+.+. .. ..+|||++|.+++.+|+.+|.+.  ..+.+...+.... .+  
T Consensus        78 ~~~~~~~~l~~g~~VI~~G~~---~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~--~~~~i~~rl~r~~-~~--  149 (186)
T PRK10078         78 VGIEIDLWLHAGFDVLVNGSR---AHLPQARARYQSALLPVCLQVSPEILRQRLENRGRE--NASEINARLARAA-RY--  149 (186)
T ss_pred             CcHHHHHHHhCCCEEEEeChH---HHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCC--CHHHHHHHHHHhh-hh--
Confidence               133345567666654442   222222222 22 67899999999999999988532  2233444443321 11  


Q ss_pred             CCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        177 VEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       177 ~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                      ...+.++|+++.+++++.++|...+..
T Consensus       150 ~~ad~~vi~~~~s~ee~~~~i~~~l~~  176 (186)
T PRK10078        150 QPQDCHTLNNDGSLRQSVDTLLTLLHL  176 (186)
T ss_pred             ccCCEEEEeCCCCHHHHHHHHHHHHhh
Confidence            223557888779999999999888755

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=99.47  E-value=5e-14  Score=138.57  Aligned_cols=96  Identities=44%  Similarity=0.635  Sum_probs=86.9

Q ss_pred             eccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHH
Q psy16778        312 IYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLV  391 (433)
Q Consensus       312 ~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~  391 (433)
                      .+.+.|.  .+.+.|+++|....+.|.                   ++.++|++.+..+ .+.|||+|++.|+..+.+++
T Consensus        72 ~~~~ge~--~lAraA~~~Gi~~~lss~-------------------s~~~~e~ia~~~~-~~~~~Qly~~~d~~~~~~~i  129 (356)
T PF01070_consen   72 AHPDGER--ALARAAAKAGIPMMLSSQ-------------------SSASLEEIAAASG-GPLWFQLYPPRDRELTRDLI  129 (356)
T ss_dssp             TSTTHHH--HHHHHHHHHTSEEEEETT-------------------CSSCHHHHHHHCT-SEEEEEEEGBSSHHHHHHHH
T ss_pred             hccchHH--HHHHHHhccCcceeccCC-------------------ccCCHHHHHhhcc-CCeEEEEEEecCHHHHHHHH
Confidence            3556666  689999999999999887                   7889999998866 57899999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCCCCCCchhhhhcCCCCCCCCC
Q psy16778        392 QRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLK  429 (433)
Q Consensus       392 ~ra~~~G~~aivlTvD~~~~g~r~~~~r~~~~~~~~~~  429 (433)
                      +||+++||+||+||||+|+.|+|++|.|++|++|++++
T Consensus       130 ~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~  167 (356)
T PF01070_consen  130 RRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLS  167 (356)
T ss_dssp             HHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHC
T ss_pred             HHhhcCCCCEEEEECcCcccCCcccccccccCCCcccc
Confidence            99999999999999999999999999999999998863

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.46  E-value=3.3e-13  Score=121.29  Aligned_cols=162  Identities=12%  Similarity=0.162  Sum_probs=96.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhh--CCCcEE
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNV--DNLTGV  114 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~V  114 (433)
                      +|+|+|+|||||||+++.|++++|+.+++++++.+.........+...+.   ......-+.....+...+.  .+.++|
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v   80 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL   80 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence            48999999999999999999999999999988764321110000000000   0000001111223333222  256789


Q ss_pred             EEcCcccHHHHHHHHhc----CC-eEEEEEEcCHHHHHHHHHHhhCC---C-CCHHhHHHHHhhccCCC-----CC-CCC
Q psy16778        115 LVCSALRRNYRDIIRNN----NR-VVFIYLKAEFGVILSRLQKRAEH---F-MPADLLESQFQTLEEPD-----PL-VEP  179 (433)
Q Consensus       115 i~~~~~~~~~~~~l~~~----~~-~~vv~L~~~~e~l~~Rl~~R~~~---~-~~~~~l~~~~~~~~~~~-----~~-~~~  179 (433)
                      +++.+.+......+.+.    .. ..+|||++|++++.+|+.+|...   . ...+.+...+..+.+..     ++ ...
T Consensus        81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~  160 (183)
T TIGR01359        81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKG  160 (183)
T ss_pred             EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99887665554433321    12 57999999999999999998632   1 12344444433332210     00 112


Q ss_pred             CeEEEccCCCHHHHHHHHhcCC
Q psy16778        180 DVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       180 ~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ..++||++.+++++.+.+.+.+
T Consensus       161 ~~~~Id~~~~~~~v~~~i~~~l  182 (183)
T TIGR01359       161 KVKEINAEGSVEEVFEDVEKIF  182 (183)
T ss_pred             CEEEEECCCCHHHHHHHHHHHh
Confidence            4578999999999999887654

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.46  E-value=1.4e-13  Score=118.34  Aligned_cols=133  Identities=24%  Similarity=0.342  Sum_probs=84.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCc
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSA  119 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~  119 (433)
                      +|+++|+|||||||+++.|++.++..+++.|.+.......... ...............+...+...+..|.++|++.+.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~   79 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPP-SPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTN   79 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSG-CCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS-
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccc-cchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCc
Confidence            5899999999999999999999999999999976431110000 000000111122234445566667788899999887


Q ss_pred             ccHHHHH----HHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCC-----CCHHhHHHHHhhccCC
Q psy16778        120 LRRNYRD----IIRNNNR-VVFIYLKAEFGVILSRLQKRAEHF-----MPADLLESQFQTLEEP  173 (433)
Q Consensus       120 ~~~~~~~----~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~-----~~~~~l~~~~~~~~~~  173 (433)
                      .....++    .+++.+- ..+|+|+++.+++.+|+.+|....     .+.+.+.++++.++.|
T Consensus        80 ~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~p  143 (143)
T PF13671_consen   80 LSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDKRFEVPEEVFDRMLARFEPP  143 (143)
T ss_dssp             -SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTTS----HHHHHHHHHHHH--
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccccccCcHHHHHHHHHhhccC
Confidence            6655544    4443332 689999999999999999997542     3355666666666543

...

>PRK14532 adenylate kinase; Provisional

Probab=99.46  E-value=7.1e-13  Score=119.72  Aligned_cols=158  Identities=11%  Similarity=0.113  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccc----------cCCCCCCcCChhHHHHHHHHHHHhhh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMS----------AKQPLNDEDRRPWLNNINRIIHQLNV  108 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (433)
                      |.|+|+|+|||||||+++.|++++|+.++++|++.+........          .|..+.+   ......+.+.+.. ..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~-~~   76 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSD---EIVIALIEERLPE-AE   76 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCH---HHHHHHHHHHHhC-cC
Confidence            46999999999999999999999999999999887542111100          1111100   1111122222221 22


Q ss_pred             CCCcEEEEcCcccHHHHHHHH----hcC-C-eEEEEEEcCHHHHHHHHHHhh---CCCCC-HHhHHHHHhhc----c---
Q psy16778        109 DNLTGVLVCSALRRNYRDIIR----NNN-R-VVFIYLKAEFGVILSRLQKRA---EHFMP-ADLLESQFQTL----E---  171 (433)
Q Consensus       109 ~~~~~Vi~~~~~~~~~~~~l~----~~~-~-~~vv~L~~~~e~l~~Rl~~R~---~~~~~-~~~l~~~~~~~----~---  171 (433)
                      .+.++|+++.+.....++.+.    ..+ . ..+|||++|++++.+|+.+|.   +++.. .+.+...+..+    .   
T Consensus        77 ~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~  156 (188)
T PRK14532         77 AAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLL  156 (188)
T ss_pred             ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            356789988877666655443    222 1 479999999999999999884   22222 22222222222    1   


Q ss_pred             CCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        172 EPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       172 ~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      +.|. .....+.||.+.+++++.++|.+.+
T Consensus       157 ~~y~-~~~~~~~id~~~~~eev~~~I~~~l  185 (188)
T PRK14532        157 PYYA-GQGKLTEVDGMGSIEAVAASIDAAL  185 (188)
T ss_pred             HHHH-hcCCEEEEECCCCHHHHHHHHHHHH
Confidence            1111 1224567777799999999987665

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.45  E-value=6.1e-13  Score=138.64  Aligned_cols=183  Identities=16%  Similarity=0.200  Sum_probs=120.4

Q ss_pred             ccCCccceeeeeecccC-C-CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC------eEEeCCCCCccccccccccC
Q psy16778         13 GMWPPQYVVTLIMTTTL-S-PSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGV------KFIDGDHLHPQSNIDKMSAK   84 (433)
Q Consensus        13 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~------~~id~D~~~~~~~~~~~~~~   84 (433)
                      |.-+|.++...+..+.. . .+...++|.+|+|+|+|||||||+|+.|+++++.      .++|+|.+..     .+..+
T Consensus       365 G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~-----~l~ge  439 (568)
T PRK05537        365 GLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRK-----HLSSE  439 (568)
T ss_pred             CCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHH-----hccCC
Confidence            33445555555533221 1 3445678899999999999999999999999985      8999998742     22233


Q ss_pred             CCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCccc----HHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC--
Q psy16778         85 QPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALR----RNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM--  158 (433)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~----~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~--  158 (433)
                      ..|........++.+.......+..|..+|++.....    ..+++.+++.+.+++|||+++.+++.+|+.+  ....  
T Consensus       440 ~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr--~Ll~~~  517 (568)
T PRK05537        440 LGFSKEDRDLNILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRK--GLYAKA  517 (568)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccc--cccccc
Confidence            4455544444555554555556677877777765533    3556666664325689999999999999632  1111  


Q ss_pred             CHHhHHHHHhhccCCCCCCCCCeEEEccC-CCHHHHHHHHhcCCCC
Q psy16778        159 PADLLESQFQTLEEPDPLVEPDVRTVSVN-EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       159 ~~~~l~~~~~~~~~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~~  203 (433)
                      ..+.++..+..+++.|. -+.++++|+++ .++++++++|.+.+..
T Consensus       518 ~~~~i~~l~~~R~~yy~-p~~Adl~IDt~~~s~~eiv~~Il~~L~~  562 (568)
T PRK05537        518 REGKIKGFTGISDPYEP-PANPELVIDTTNVTPDECAHKILLYLEE  562 (568)
T ss_pred             hhchhhccccccccccC-CCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            12334444444444331 14578999998 7999999998877644

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.44  E-value=1.1e-12  Score=115.83  Aligned_cols=158  Identities=16%  Similarity=0.143  Sum_probs=97.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC--eEEeCCCCCccccccccc--cCCCCCC------cCChhHHHHHHHHHHHhh
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGV--KFIDGDHLHPQSNIDKMS--AKQPLND------EDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~--~~id~D~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~~~~~~~~  107 (433)
                      +.+|+|.|+|.|||||+++.|.+.+..  .++..|.+..........  .++.+..      +.....+......+..+.
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a   80 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMA   80 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999954  468888775411101111  1221111      111222344455567777


Q ss_pred             hCCCcEEEEcCcccHHH-HHHHHh-cCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEE
Q psy16778        108 VDNLTGVLVCSALRRNY-RDIIRN-NNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRT  183 (433)
Q Consensus       108 ~~~~~~Vi~~~~~~~~~-~~~l~~-~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  183 (433)
                      ..|.++|++.......+ .+.+++ ...  .++|-+.||.+++.+|...|+++...  ....++...++...    .++.
T Consensus        81 ~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G--~a~~q~~~Vh~~~~----YDle  154 (174)
T PF07931_consen   81 RAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIG--LAAWQAEHVHEGGR----YDLE  154 (174)
T ss_dssp             HTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT--HHHHHTTGGGTT-------SEE
T ss_pred             hCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchH--HHHHHHhhcccCCC----CCEE
Confidence            89999999966544443 344422 112  68899999999999999999875443  44555554554332    5699


Q ss_pred             EccC-CCHHHHHHHHhcCC
Q psy16778        184 VSVN-EPLEGIVSKSAIMP  201 (433)
Q Consensus       184 Id~~-~~~ee~~~~i~~~l  201 (433)
                      |||+ .+++|+++.|++.+
T Consensus       155 VDTs~~sp~ecA~~I~~~~  173 (174)
T PF07931_consen  155 VDTSATSPEECAREILARL  173 (174)
T ss_dssp             EETTSS-HHHHHHHHHTT-
T ss_pred             EECCCCCHHHHHHHHHHHh
Confidence            9999 99999999999876

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=99.42  E-value=5e-13  Score=136.36  Aligned_cols=172  Identities=16%  Similarity=0.135  Sum_probs=100.1

Q ss_pred             CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhh--
Q psy16778         30 SPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLN--  107 (433)
Q Consensus        30 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  107 (433)
                      +..+. ..+++|+|.|++||||||+++.|++++|+.++|+|.+++...+..+..++.+.+....  ...++. +....  
T Consensus       277 N~~~~-~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l--~~l~~~-l~~~~~~  352 (512)
T PRK13477        277 NVFLM-KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEAL--AELLSD-LKIELKP  352 (512)
T ss_pred             eeEec-cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHH--HHHHhc-CCeeecc
Confidence            34443 4889999999999999999999999999999999999876443333444443321100  000000 00000  


Q ss_pred             --hCCCcEEEEc------------------CcccHHHHHHHHhc---------------------C-C-eEEEEEEcCHH
Q psy16778        108 --VDNLTGVLVC------------------SALRRNYRDIIRNN---------------------N-R-VVFIYLKAEFG  144 (433)
Q Consensus       108 --~~~~~~Vi~~------------------~~~~~~~~~~l~~~---------------------~-~-~~vv~L~~~~e  144 (433)
                        ..+..+.++.                  -...+..|+.+.+.                     . + .+.|||+++++
T Consensus       353 ~~~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigtvV~P~AdlKIfL~As~e  432 (512)
T PRK13477        353 SSGSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGTHVFPDAELKIFLTASVE  432 (512)
T ss_pred             CCCCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEcccceeEEcCCCCEEEEEECCHH
Confidence              0000011110                  00112222222111                     0 1 58999999999


Q ss_pred             HHHHHHHHh-hCCC---CCHHhHHHHHhhcc---------CCCCCCCCCeEEEccC-CCHHHHHHHHhcCCCCCCCC
Q psy16778        145 VILSRLQKR-AEHF---MPADLLESQFQTLE---------EPDPLVEPDVRTVSVN-EPLEGIVSKSAIMPPTRAPP  207 (433)
Q Consensus       145 ~l~~Rl~~R-~~~~---~~~~~l~~~~~~~~---------~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~~~~~~  207 (433)
                      ++.+|...+ ..++   ...+.+...+..++         ++|  ...++++||++ .+++++++.|.+.+.+..+.
T Consensus       433 vRa~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy--~a~dai~IDTs~lsieeVv~~Il~~i~~~~~~  507 (512)
T PRK13477        433 ERARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLR--KADDAIELITDGLSIEEVVDKIIDLYRDRIPE  507 (512)
T ss_pred             HHHHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhccccccccc--ccCCeEEEECCCCCHHHHHHHHHHHHHHhCcc
Confidence            999985443 1122   12345555555555         333  45578999998 99999999998887654433

>PRK02496 adk adenylate kinase; Provisional

Probab=99.42  E-value=7e-13  Score=119.34  Aligned_cols=162  Identities=14%  Similarity=0.124  Sum_probs=100.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCC---CcCChhHHHHHHHHHHHhhh---CCCc
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLN---DEDRRPWLNNINRIIHQLNV---DNLT  112 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~  112 (433)
                      +.|+|+|+|||||||+++.|++.+|+.+++.+++...........|....   ........+.+...+...+.   ...+
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g   81 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG   81 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence            57999999999999999999999999999998876432111101010000   00000011122222332222   2346


Q ss_pred             EEEEcCcccHHHHHHHHh----cC-C-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccC-------CCCCCCC
Q psy16778        113 GVLVCSALRRNYRDIIRN----NN-R-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEE-------PDPLVEP  179 (433)
Q Consensus       113 ~Vi~~~~~~~~~~~~l~~----~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~-------~~~~~~~  179 (433)
                      +|+++.+.+......+.+    .. . ..+|+|+++.+++.+|+.+|+......+.+.+.+..+..       .+. ...
T Consensus        82 ~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~-~~~  160 (184)
T PRK02496         82 WILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYR-DRQ  160 (184)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcC
Confidence            889887655444333332    22 2 689999999999999999996544445555555555443       221 112


Q ss_pred             CeEEEccCCCHHHHHHHHhcCC
Q psy16778        180 DVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       180 ~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ..+.||.+.+++++.+.|...+
T Consensus       161 ~~~~Ida~~~~~~V~~~i~~~l  182 (184)
T PRK02496        161 KLLTIDGNQSVEAVTTELKAAL  182 (184)
T ss_pred             CEEEEECCCCHHHHHHHHHHHh
Confidence            4688999999999999998765

>PRK14527 adenylate kinase; Provisional

Probab=99.42  E-value=8.3e-13  Score=119.64  Aligned_cols=166  Identities=13%  Similarity=0.119  Sum_probs=100.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC----CCCcCChhHHHHHHHHHHHhhhC-
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP----LNDEDRRPWLNNINRIIHQLNVD-  109 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-  109 (433)
                      ..++++|+|+|+|||||||+++.|++++|+.+++.+++...........+..    +.. ......+.+...+...+.+ 
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~-g~~~p~~~~~~l~~~~l~~~   81 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEA-GDLVPDELILALIRDELAGM   81 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcC
Confidence            4578999999999999999999999999999999988864321100000000    000 0000012233333333322 


Q ss_pred             -CCcEEEEcCcccHHHHHHHH----hcCC--eEEEEEEcCHHHHHHHHHHhhC---CC-CCHHhHHHHHhhccCCCC---
Q psy16778        110 -NLTGVLVCSALRRNYRDIIR----NNNR--VVFIYLKAEFGVILSRLQKRAE---HF-MPADLLESQFQTLEEPDP---  175 (433)
Q Consensus       110 -~~~~Vi~~~~~~~~~~~~l~----~~~~--~~vv~L~~~~e~l~~Rl~~R~~---~~-~~~~~l~~~~~~~~~~~~---  175 (433)
                       +.++|+++.+.....++.+.    ..+.  ..+++|++|.+++.+|+.+|..   +. ...+.+...++.|..-..   
T Consensus        82 ~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~  161 (191)
T PRK14527         82 EPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLV  161 (191)
T ss_pred             CCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHH
Confidence             34688887665555554443    2222  4689999999999999999852   11 123444444433332110   


Q ss_pred             --CC-CCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        176 --LV-EPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       176 --~~-~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                        |+ ....+.||.+.+++++.+++...+
T Consensus       162 ~~y~~~~~~~~id~~~~~~~v~~~i~~~l  190 (191)
T PRK14527        162 DYYEARGHLKRVDGLGTPDEVYARILKAL  190 (191)
T ss_pred             HHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence              12 124678888899999999987654

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.41  E-value=1.9e-12  Score=116.71  Aligned_cols=164  Identities=12%  Similarity=0.146  Sum_probs=100.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc----cccCCCCCCc---CChhHHHHHHHHHHHhhhC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK----MSAKQPLNDE---DRRPWLNNINRIIHQLNVD  109 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  109 (433)
                      +.++|+|+|+|||||||+++.|++.+|+.+++++++........    ......++..   .....+..+.+.+...+..
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT   81 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc
Confidence            34689999999999999999999999999999987653311000    0000011111   1122233344444444556


Q ss_pred             CCcEEEEcCcccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCC---CC-CHHhHHHHHhhcc----C---CCCC
Q psy16778        110 NLTGVLVCSALRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRAEH---FM-PADLLESQFQTLE----E---PDPL  176 (433)
Q Consensus       110 ~~~~Vi~~~~~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~---~~-~~~~l~~~~~~~~----~---~~~~  176 (433)
                      +.++|+++.+........+.... . ..+|||++|++++.+|+.+|...   .. ..+.+..++..+.    +   .|. 
T Consensus        82 ~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~-  160 (188)
T TIGR01360        82 SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYE-  160 (188)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHH-
Confidence            67788887765544444444322 2 68999999999999999988631   11 2333333332221    1   111 


Q ss_pred             CCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        177 VEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       177 ~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      .....+.||.+.+++++...|...+
T Consensus       161 ~~~~~~~id~~~~~~~v~~~i~~~l  185 (188)
T TIGR01360       161 TKGKLRKINAEGTVDDVFLQVCTAI  185 (188)
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHH
Confidence            1224568888899999998887665

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK13808 adenylate kinase; Provisional

Probab=99.41  E-value=9.5e-13  Score=127.18  Aligned_cols=164  Identities=12%  Similarity=0.147  Sum_probs=99.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCC----CC---cCChhHHHHHHHHHHHhhhCCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPL----ND---EDRRPWLNNINRIIHQLNVDNL  111 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~  111 (433)
                      |.|+|+|+|||||||+++.|++.||+.+|+.+++++.........|...    ..   .........+.+.+.... ...
T Consensus         1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~-~~~   79 (333)
T PRK13808          1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPD-AAN   79 (333)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhccc-ccC
Confidence            4699999999999999999999999999999988754221111111110    00   001111222333332221 235


Q ss_pred             cEEEEcCcccHHHHHHHHh----cC-C-eEEEEEEcCHHHHHHHHHHhhC---------C-CCCHHhHHHHHhhccCC--
Q psy16778        112 TGVLVCSALRRNYRDIIRN----NN-R-VVFIYLKAEFGVILSRLQKRAE---------H-FMPADLLESQFQTLEEP--  173 (433)
Q Consensus       112 ~~Vi~~~~~~~~~~~~l~~----~~-~-~~vv~L~~~~e~l~~Rl~~R~~---------~-~~~~~~l~~~~~~~~~~--  173 (433)
                      ++|||+.+.+....+.|.+    .+ . .++|+|++|++++++|+..|..         + ....+.+...+..|+..  
T Consensus        80 G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~  159 (333)
T PRK13808         80 GFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTE  159 (333)
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhH
Confidence            7899987766555554432    11 2 6899999999999999998721         1 11244444444333221  


Q ss_pred             ---CCCCC-CCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        174 ---DPLVE-PDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       174 ---~~~~~-~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                         .+|.+ ...+.||.+.+++++.+.|...|..
T Consensus       160 PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~  193 (333)
T PRK13808        160 PLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAA  193 (333)
T ss_pred             HHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHH
Confidence               00122 2467888889999999998887653

>TIGR01351 adk adenylate kinases

Probab=99.41  E-value=1.3e-12  Score=120.08  Aligned_cols=162  Identities=13%  Similarity=0.102  Sum_probs=99.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC----CCC--cC-ChhHHHHHHHHHHHhhhCCCcE
Q psy16778         41 FVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP----LND--ED-RRPWLNNINRIIHQLNVDNLTG  113 (433)
Q Consensus        41 I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~----~~~--~~-~~~~~~~~~~~~~~~~~~~~~~  113 (433)
                      |+|+|+|||||||+++.|++++|+.+++++++.+.........+..    .+.  .. .......+.+.+......+.++
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~   81 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF   81 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence            8999999999999999999999999999988864321111000100    000  00 0111122222232212225679


Q ss_pred             EEEcCcccHHHHHHHHhcC--C-eEEEEEEcCHHHHHHHHHHhhCC-------------------------------CCC
Q psy16778        114 VLVCSALRRNYRDIIRNNN--R-VVFIYLKAEFGVILSRLQKRAEH-------------------------------FMP  159 (433)
Q Consensus       114 Vi~~~~~~~~~~~~l~~~~--~-~~vv~L~~~~e~l~~Rl~~R~~~-------------------------------~~~  159 (433)
                      ||++.+......+.+.+..  . ..+|+|++|.+++.+|+..|.-.                               ...
T Consensus        82 ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~  161 (210)
T TIGR01351        82 ILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDT  161 (210)
T ss_pred             EEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCC
Confidence            9999877766666665432  2 68999999999999999988511                               112


Q ss_pred             HHhHHHHHhhccCCCC-----C-CCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        160 ADLLESQFQTLEEPDP-----L-VEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       160 ~~~l~~~~~~~~~~~~-----~-~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      .+.+...+..|+.-..     | ...-.+.||.+.+++++...|...++
T Consensus       162 ~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~  210 (210)
T TIGR01351       162 EEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEALK  210 (210)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhhC
Confidence            3445544444432110     1 11245778888999999988877653

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PLN02674 adenylate kinase

Probab=99.41  E-value=1.5e-12  Score=120.99  Aligned_cols=165  Identities=12%  Similarity=0.087  Sum_probs=103.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhh---C
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNV---D  109 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~  109 (433)
                      ...+.|+|+|+|||||||+++.|++++|+.||+++++.+.........|...+.   .+....-+.+..++...+.   .
T Consensus        29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~  108 (244)
T PLN02674         29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC  108 (244)
T ss_pred             ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence            445789999999999999999999999999999999975432111111211110   1111111222333333332   2


Q ss_pred             CCcEEEEcCcccHHHHHHHHhc----C-C-eEEEEEEcCHHHHHHHHHHhhCC---------------------------
Q psy16778        110 NLTGVLVCSALRRNYRDIIRNN----N-R-VVFIYLKAEFGVILSRLQKRAEH---------------------------  156 (433)
Q Consensus       110 ~~~~Vi~~~~~~~~~~~~l~~~----~-~-~~vv~L~~~~e~l~~Rl~~R~~~---------------------------  156 (433)
                      ..++|+++.+.+....+.|.+.    + . ..+|+|++|.+++.+|+..|.-.                           
T Consensus       109 ~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L  188 (244)
T PLN02674        109 QKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPL  188 (244)
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCcc
Confidence            3578999888776665544332    1 2 68999999999999999988411                           


Q ss_pred             ----CCCHHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        157 ----FMPADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       157 ----~~~~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                          ....+.+..+++.|+.       .|. ...-.+.||.+.+++++.+.|...+
T Consensus       189 ~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~-~~g~l~~Ida~~~~~eV~~~i~~~l  243 (244)
T PLN02674        189 IQRKDDTAAVLKSRLEAFHKQTEPVIDYYA-KKGVVANLHAEKPPKEVTAEVQKAL  243 (244)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHhHHHHHHHH-hcCCEEEEECCCCHHHHHHHHHHHh
Confidence                1123444444444432       121 2234677888899999998887654

>PLN02459 probable adenylate kinase

Probab=99.40  E-value=2e-12  Score=120.80  Aligned_cols=170  Identities=12%  Similarity=0.092  Sum_probs=107.3

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCC----hhHHHHHHHHHHH
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDR----RPWLNNINRIIHQ  105 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~  105 (433)
                      +-..+++.|+|+|+|||||||+++.|++.+|+.|++++++++.........|...+.   .+.    ......+.+.+..
T Consensus        24 ~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~  103 (261)
T PLN02459         24 LAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEA  103 (261)
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Confidence            333455789999999999999999999999999999999875432111111111100   010    1111222233322


Q ss_pred             hh-hCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCC--------------------------
Q psy16778        106 LN-VDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHF--------------------------  157 (433)
Q Consensus       106 ~~-~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~--------------------------  157 (433)
                      .. ....++|+++.+.+....+.|.+... ..+|+|+++.+++++|+..|.-.+                          
T Consensus       104 ~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p  183 (261)
T PLN02459        104 GEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPP  183 (261)
T ss_pred             ccccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCC
Confidence            21 12357899998888888777776544 689999999999999999884111                          


Q ss_pred             ----------------CCHHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        158 ----------------MPADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       158 ----------------~~~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                                      ...+.+..+++.|+.       .|. ...-.+.|+...+++++..+|...+..
T Consensus       184 ~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~-~~g~l~~id~~~~~~eV~~~i~~~l~~  251 (261)
T PLN02459        184 LLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYR-KRGKLLEFELPGGIPETWPRLLQALNL  251 (261)
T ss_pred             CCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHH-hcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence                            113334444444432       121 223456777778999998888877654

>PRK06217 hypothetical protein; Validated

Probab=99.40  E-value=2e-11  Score=109.85  Aligned_cols=153  Identities=20%  Similarity=0.213  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCS  118 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~  118 (433)
                      +.|+|+|.|||||||+++.|++++|+++++.|.+.+...      +..+......  ... ...+...+..+..+||++.
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~------~~~~~~~~~~--~~~-~~~~~~~~~~~~~~vi~G~   72 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT------DPPFTTKRPP--EER-LRLLLEDLRPREGWVLSGS   72 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC------CCCccccCCH--HHH-HHHHHHHHhcCCCEEEEcc
Confidence            579999999999999999999999999999999875421      1111111111  111 2233333344567888855


Q ss_pred             cccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC--------CHHhHHHHHh----hccCC---CC-C------
Q psy16778        119 ALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM--------PADLLESQFQ----TLEEP---DP-L------  176 (433)
Q Consensus       119 ~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~--------~~~~l~~~~~----~~~~~---~~-~------  176 (433)
                      ..  .+.+.+.... +.+|||++|.+++..|+.+|.....        ..+.....+.    .++.+   +. .      
T Consensus        73 ~~--~~~~~~~~~~-d~~i~Ld~~~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (183)
T PRK06217         73 AL--GWGDPLEPLF-DLVVFLTIPPELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWAASYDTAGPEGRSLAAHEQW  149 (183)
T ss_pred             HH--HHHHHHHhhC-CEEEEEECCHHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHHHhccCCCCCcccHHHHHHH
Confidence            43  2333333332 5799999999999999998852210        0111111111    11111   00 0      


Q ss_pred             ---CCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        177 ---VEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       177 ---~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                         .....+++++..++++..+.+.+.|..
T Consensus       150 ~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~  179 (183)
T PRK06217        150 LADQSCPVLRLDGDLTVEDLLDEVLDHLAS  179 (183)
T ss_pred             HHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence               012445666668999999998888744

>PRK14526 adenylate kinase; Provisional

Probab=99.39  E-value=2.8e-12  Score=117.48  Aligned_cols=163  Identities=14%  Similarity=0.153  Sum_probs=103.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC----c---CChhHHHHHHHHHHHhhhCCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND----E---DRRPWLNNINRIIHQLNVDNL  111 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~  111 (433)
                      |.|+|+|+|||||||+++.|++.+|+.+++++++...........|...+.    -   ........+.+.+.... ...
T Consensus         1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~-~~~   79 (211)
T PRK14526          1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIK-NND   79 (211)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhccc-ccC
Confidence            468999999999999999999999999999999865321111111111100    0   00111122233332221 245


Q ss_pred             cEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCC-------------------------------CCC
Q psy16778        112 TGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEH-------------------------------FMP  159 (433)
Q Consensus       112 ~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~-------------------------------~~~  159 (433)
                      ++|+++.+......+.+.+..+ ..+++|.+|.+++.+|+..|.-.                               ...
T Consensus        80 g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~  159 (211)
T PRK14526         80 NFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDK  159 (211)
T ss_pred             cEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCC
Confidence            7899888777777777776543 56888999999999999988521                               112


Q ss_pred             HHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        160 ADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       160 ~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                      .+.+...++.|+.       .|. ...-.+.||.+.+++++.++|...+.+
T Consensus       160 ~e~i~~Rl~~y~~~t~pv~~~y~-~~~~~~~id~~~~~~~V~~~i~~~l~~  209 (211)
T PRK14526        160 EESLKTRLQEYKLQTKPLIEFYS-KCNRLNNIDASKDIDEVKKKLIEIISK  209 (211)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHH-hcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence            4455555554443       121 222457888889999999999887755

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.38  E-value=4.4e-12  Score=117.52  Aligned_cols=119  Identities=13%  Similarity=0.143  Sum_probs=80.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cC----ChhHHHHHHHHHHHh-h
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---ED----RRPWLNNINRIIHQL-N  107 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~-~  107 (433)
                      +.++.|+|+|+|||||||+++.|++++|++++++|++.+.........|...+.   ..    .......+.+.+... .
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~   83 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTD   83 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcc
Confidence            455789999999999999999999999999999999985432111111100000   00    112223333334332 1


Q ss_pred             hCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhh
Q psy16778        108 VDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus       108 ~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      ....++|+++.+.+......+.+... ..+++|+++.+++++|+..|.
T Consensus        84 ~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr  131 (229)
T PTZ00088         84 DCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR  131 (229)
T ss_pred             ccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence            23457899988777777777765444 689999999999999999885

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.37  E-value=6.9e-12  Score=111.96  Aligned_cols=161  Identities=18%  Similarity=0.207  Sum_probs=92.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCCh----------------------h
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRR----------------------P   94 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~----------------------~   94 (433)
                      +.++|+|-||+||||||+++.||++||+.|+|++.+++......+..+..+.+....                      .
T Consensus         3 ~~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~ged   82 (222)
T COG0283           3 AAIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGED   82 (222)
T ss_pred             CceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCch
Confidence            348999999999999999999999999999999988754433333333333221000                      0


Q ss_pred             ---HHH---------------HHHHH----HHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHH-H
Q psy16778         95 ---WLN---------------NINRI----IHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL-Q  151 (433)
Q Consensus        95 ---~~~---------------~~~~~----~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl-~  151 (433)
                         .++               .+.+.    ...+...+.++|+++--.--   -.+.+.  .+.+||++|++++.+|= .
T Consensus        83 vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGT---vV~PdA--~lKiFLtAS~e~RA~RR~~  157 (222)
T COG0283          83 VSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGT---VVFPDA--ELKIFLTASPEERAERRYK  157 (222)
T ss_pred             hhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcc---eECCCC--CeEEEEeCCHHHHHHHHHH
Confidence               000               00111    11111222334444311000   001111  48999999999988773 3


Q ss_pred             HhhCC--CCCHHhHHHHHhhccCCCC-------CCCCCeEEEccC-CCHHHHHHHHhcCCC
Q psy16778        152 KRAEH--FMPADLLESQFQTLEEPDP-------LVEPDVRTVSVN-EPLEGIVSKSAIMPP  202 (433)
Q Consensus       152 ~R~~~--~~~~~~l~~~~~~~~~~~~-------~~~~~~~~Id~~-~~~ee~~~~i~~~l~  202 (433)
                      +....  ....+.+...+..++..+.       ..+.+.+.||++ .+++|+++.|...+.
T Consensus       158 q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~  218 (222)
T COG0283         158 QLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIR  218 (222)
T ss_pred             HHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence            33211  1113444444444443221       145688999998 999999999987654

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.37  E-value=4.1e-12  Score=117.27  Aligned_cols=163  Identities=8%  Similarity=0.057  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhh---CCCc
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNV---DNLT  112 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~  112 (433)
                      +.|+|+|+|||||||+++.|++++|+.+++++++.+.........+.....   ......-+.+...+...+.   ...+
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g   80 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG   80 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence            469999999999999999999999999999988864321111000100000   0000111122223332222   2347


Q ss_pred             EEEEcCcccHHHHHHH----HhcC-C-eEEEEEEcCHHHHHHHHHHhhCCC-----------------------------
Q psy16778        113 GVLVCSALRRNYRDII----RNNN-R-VVFIYLKAEFGVILSRLQKRAEHF-----------------------------  157 (433)
Q Consensus       113 ~Vi~~~~~~~~~~~~l----~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~-----------------------------  157 (433)
                      +||++.+......+.+    ...+ . ..+|+|+++.+++.+|+.+|...+                             
T Consensus        81 ~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~r  160 (215)
T PRK00279         81 FLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQR  160 (215)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccCC
Confidence            9999877666555555    3222 2 589999999999999999885211                             


Q ss_pred             --CCHHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        158 --MPADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       158 --~~~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                        ...+.+...+..+..       .|. ...-.+.||.+.+++++...+...+.
T Consensus       161 ~dd~~~~i~~Rl~~y~~~~~~i~~~y~-~~~~~~~id~~~~~~~v~~~i~~~l~  213 (215)
T PRK00279        161 ADDNEETVRKRLEVYHKQTAPLIDYYK-KKGKLKKIDGTGSIDEVFADILKALG  213 (215)
T ss_pred             CCCCHHHHHHHHHHHHHhhHHHHHHHH-hCCCEEEEECCCCHHHHHHHHHHHHh
Confidence              123344444444332       121 11236778888999999998877654

>PRK04182 cytidylate kinase; Provisional

Probab=99.36  E-value=2.3e-12  Score=115.29  Aligned_cols=157  Identities=18%  Similarity=0.182  Sum_probs=91.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC-----cCChhHHHHHHHHHHHhhhCCCcE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND-----EDRRPWLNNINRIIHQLNVDNLTG  113 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  113 (433)
                      |+|+|+|++||||||+++.|++++|++++|.|++.....   ...|.....     .........++..+......+.++
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELA---KERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDNV   77 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHH---HHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCE
Confidence            589999999999999999999999999999876543211   011221110     000111122333333333244467


Q ss_pred             EEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHH--hHHHH----HhhccCCC----CCCCCCeEE
Q psy16778        114 VLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPAD--LLESQ----FQTLEEPD----PLVEPDVRT  183 (433)
Q Consensus       114 Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~--~l~~~----~~~~~~~~----~~~~~~~~~  183 (433)
                      |+++....  +  .+.... .++|||++|++++.+|+..|.+.+....  .+...    ...+...+    .+.+.++++
T Consensus        78 Vi~g~~~~--~--~~~~~~-~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~  152 (180)
T PRK04182         78 VLEGRLAG--W--MAKDYA-DLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLV  152 (180)
T ss_pred             EEEEeecc--e--EecCCC-CEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEE
Confidence            77653210  0  111111 4789999999999999998864332211  11111    01111110    012357899


Q ss_pred             EccC-CCHHHHHHHHhcCCCC
Q psy16778        184 VSVN-EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       184 Id~~-~~~ee~~~~i~~~l~~  203 (433)
                      ||++ .+++++++.|...+..
T Consensus       153 idt~~~~~~~~~~~I~~~~~~  173 (180)
T PRK04182        153 INTSRWDPEGVFDIILTAIDK  173 (180)
T ss_pred             EECCCCCHHHHHHHHHHHHHH
Confidence            9998 8999999988776643

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.36  E-value=3.3e-12  Score=115.82  Aligned_cols=154  Identities=19%  Similarity=0.189  Sum_probs=90.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc------c----------ccC----------CCCCCcCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK------M----------SAK----------QPLNDEDR   92 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~------~----------~~~----------~~~~~~~~   92 (433)
                      ++|+|+|++||||||+++.|++.+|++++|.|.+.......+      +          ..|          ..|.++..
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            479999999999999999999988999999998853211000      0          001          11222211


Q ss_pred             hhHHHHHHHHHH--------Hhhh--CCCcEE-EEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHH
Q psy16778         93 RPWLNNINRIIH--------QLNV--DNLTGV-LVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPAD  161 (433)
Q Consensus        93 ~~~~~~~~~~~~--------~~~~--~~~~~V-i~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~  161 (433)
                      .   ..+++++.        ..+.  ....+| ++..-+.+..   +.+.. +.+|+++||.+++.+|+.+|.+  ...+
T Consensus        82 ~---~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~~---~~~~~-D~ii~V~a~~e~r~~Rl~~R~g--~s~e  152 (195)
T PRK14730         82 R---RWLENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEAK---LTDLC-SEIWVVDCSPEQQLQRLIKRDG--LTEE  152 (195)
T ss_pred             H---HHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCcc---hHhCC-CEEEEEECCHHHHHHHHHHcCC--CCHH
Confidence            1   22222221        1111  122344 4443333322   12222 4799999999999999999964  2333


Q ss_pred             hHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        162 LLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       162 ~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      .+................++++|+++.+.+++..++.+.+
T Consensus       153 ~~~~ri~~Q~~~~~k~~~aD~vI~N~g~~e~l~~qv~~~l  192 (195)
T PRK14730        153 EAEARINAQWPLEEKVKLADVVLDNSGDLEKLYQQVDQLL  192 (195)
T ss_pred             HHHHHHHhCCCHHHHHhhCCEEEECCCCHHHHHHHHHHHH
Confidence            3333333332211113458899999999999999887553

>PRK14529 adenylate kinase; Provisional

Probab=99.35  E-value=9.7e-12  Score=114.32  Aligned_cols=163  Identities=10%  Similarity=0.016  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhh--CCCcE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNV--DNLTG  113 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~  113 (433)
                      |.|+|.|+|||||||+++.|++++++.++++.++.+.........+..++.   ......-+.+-..+...+.  ...++
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~   80 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW   80 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence            469999999999999999999999999999888875422111111110000   0111111222222322221  14679


Q ss_pred             EEEcCcccHHHHHHHHh----c-CC-eEEEEEEcCHHHHHHHHHHhhCC-------------------------------
Q psy16778        114 VLVCSALRRNYRDIIRN----N-NR-VVFIYLKAEFGVILSRLQKRAEH-------------------------------  156 (433)
Q Consensus       114 Vi~~~~~~~~~~~~l~~----~-~~-~~vv~L~~~~e~l~~Rl~~R~~~-------------------------------  156 (433)
                      |+|+.+.+....+.|.+    . .. ..+|+|++|.+++.+|+..|.-.                               
T Consensus        81 iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~~  160 (223)
T PRK14529         81 LLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELST  160 (223)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCcccc
Confidence            99998877766665543    2 12 68999999999999999988411                               


Q ss_pred             -CCC--HHhHHHHHhhccCC--------CCCC------CCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        157 -FMP--ADLLESQFQTLEEP--------DPLV------EPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       157 -~~~--~~~l~~~~~~~~~~--------~~~~------~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                       ..+  .+.+..++..|++.        .+|+      +.-.+.||...+++++.+.|.+.+
T Consensus       161 R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l  222 (223)
T PRK14529        161 RADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL  222 (223)
T ss_pred             CCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence             111  34555555555431        0123      234677777788888888876654

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.35  E-value=1.1e-11  Score=117.02  Aligned_cols=154  Identities=18%  Similarity=0.330  Sum_probs=102.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCCCccccccccccCCCCCCcCChhHHH-HHHHHHHHhhhCCCcE
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN-NINRIIHQLNVDNLTG  113 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  113 (433)
                      .|+|+|+|||||||+++.|++.+   |  +.+++.|.+.....        .+.. ......+ .....+...+..+..+
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~--------~~~~-~~e~~~~~~~~~~i~~~l~~~~~V   71 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP--------VWKE-KYEEFIRDSTLYLIKTALKNKYSV   71 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH--------HhhH-HhHHHHHHHHHHHHHHHHhCCCeE
Confidence            48999999999999999999987   2  45666666532110        0011 1112222 2334556666677777


Q ss_pred             EEEcCcccHHHHHHHH----hcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCC--CCCCeEEEcc
Q psy16778        114 VLVCSALRRNYRDIIR----NNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPL--VEPDVRTVSV  186 (433)
Q Consensus       114 Vi~~~~~~~~~~~~l~----~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~Id~  186 (433)
                      |++.+.....++..+.    .... ..+||+++|.+++.+|..+|+. ..+.+.+...+..++++...  .+...++|++
T Consensus        72 I~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~-~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~  150 (249)
T TIGR03574        72 IVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE-KIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDT  150 (249)
T ss_pred             EEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC-CCCHHHHHHHHHhhCCCCCCCCccCceEEecC
Confidence            8887765555544333    3322 6789999999999999998863 45566777888877766431  2458899998


Q ss_pred             CC--CHHHHHHHHhcCCCC
Q psy16778        187 NE--PLEGIVSKSAIMPPT  203 (433)
Q Consensus       187 ~~--~~ee~~~~i~~~l~~  203 (433)
                      +.  +++++.+.|...+..
T Consensus       151 ~~~~~~~ei~~~i~~~~~~  169 (249)
T TIGR03574       151 TKKIDYNEILEEILEISEN  169 (249)
T ss_pred             CCCCCHHHHHHHHHHHhhc
Confidence            73  778999988876543

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK01184 hypothetical protein; Provisional

Probab=99.34  E-value=1.3e-11  Score=111.07  Aligned_cols=158  Identities=13%  Similarity=0.113  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC-cCChhHH--------HHHHHHHHHhhh-
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND-EDRRPWL--------NNINRIIHQLNV-  108 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~-  108 (433)
                      ++|+|+|+|||||||+++ +++.+|+++++++++......   ..+..... ..+....        ..+...+...+. 
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~   77 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVK---KRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIRE   77 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHH---HcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHh
Confidence            589999999999999998 677899999998776543210   11211100 0000000        011112222222 


Q ss_pred             -CCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCC--CCHHhHHHHHhhccCC--CCCCCCCe
Q psy16778        109 -DNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHF--MPADLLESQFQTLEEP--DPLVEPDV  181 (433)
Q Consensus       109 -~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~--~~~~~l~~~~~~~~~~--~~~~~~~~  181 (433)
                       .+..+|++.. ......+.+++..+  +.+|++++|.+++.+|+.+|....  ...+.+..+......+  ....+.++
T Consensus        78 ~~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~ad  156 (184)
T PRK01184         78 KGDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIALAD  156 (184)
T ss_pred             cCCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHhcC
Confidence             2345666654 34444555544322  589999999999999999886321  1233344333332111  00123488


Q ss_pred             EEEccCCCHHHHHHHHhcCC
Q psy16778        182 RTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       182 ~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ++|+++.+.+++..++.+.+
T Consensus       157 ~vI~N~~~~~~l~~~v~~~~  176 (184)
T PRK01184        157 YMIVNDSTLEEFRARVRKLL  176 (184)
T ss_pred             EEEeCCCCHHHHHHHHHHHH
Confidence            99998899999998887654

>PRK14528 adenylate kinase; Provisional

Probab=99.34  E-value=9.7e-12  Score=112.05  Aligned_cols=162  Identities=17%  Similarity=0.104  Sum_probs=98.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC---CCCcCChhHHHHHHHHHHHhhh---CCCc
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP---LNDEDRRPWLNNINRIIHQLNV---DNLT  112 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~  112 (433)
                      +.|+|+|+|||||||+++.|++.+|+++++++++...........|..   +-.......-..+...+...+.   ...+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g   81 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG   81 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence            578999999999999999999999999999999864321111110000   0000000000111122222221   2346


Q ss_pred             EEEEcCcccHHHHHHHHh----cC-C-eEEEEEEcCHHHHHHHHHHhh---CC-CCCHHhHHHHHhhccCCCC-----C-
Q psy16778        113 GVLVCSALRRNYRDIIRN----NN-R-VVFIYLKAEFGVILSRLQKRA---EH-FMPADLLESQFQTLEEPDP-----L-  176 (433)
Q Consensus       113 ~Vi~~~~~~~~~~~~l~~----~~-~-~~vv~L~~~~e~l~~Rl~~R~---~~-~~~~~~l~~~~~~~~~~~~-----~-  176 (433)
                      +||++.+.+....+.+.+    .+ . ..+|+|++|.+++.+|+..|.   ++ ....+.+...+..|.....     | 
T Consensus        82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~  161 (186)
T PRK14528         82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYA  161 (186)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence            899887655554444332    11 2 689999999999999999884   22 2345566666555443111     1 


Q ss_pred             CCCCeEEEccCCCHHHHHHHHhcC
Q psy16778        177 VEPDVRTVSVNEPLEGIVSKSAIM  200 (433)
Q Consensus       177 ~~~~~~~Id~~~~~ee~~~~i~~~  200 (433)
                      ...-.+.|+.+.+++++...+...
T Consensus       162 ~~~~~~~i~~~~~~~~v~~~~~~~  185 (186)
T PRK14528        162 AQKKLSQVNGVGSLEEVTSLIQKE  185 (186)
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHh
Confidence            223568888889999999888654

>PRK08356 hypothetical protein; Provisional

Probab=99.33  E-value=4.1e-11  Score=108.92  Aligned_cols=160  Identities=13%  Similarity=0.052  Sum_probs=92.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC----------cCChhHHHHHH-------
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND----------EDRRPWLNNIN-------  100 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-------  100 (433)
                      .++|+|+|+|||||||+++.|++ +|+.+++.++......... ...+.|..          .....+-..+.       
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~   82 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHN-VSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI   82 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCccccccccc-ccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence            47899999999999999999965 8999999887542211010 01111100          00000000111       


Q ss_pred             --HHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC----CHHhHHHHHhhccCCC
Q psy16778        101 --RIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM----PADLLESQFQTLEEPD  174 (433)
Q Consensus       101 --~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~----~~~~l~~~~~~~~~~~  174 (433)
                        ..+.........++|++ .......+.+++.. ..+|||+++.+++.+|+..|.....    ..+.+.+........+
T Consensus        83 ~~~~~~~~~~~~~~ividG-~r~~~q~~~l~~~~-~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l~  160 (195)
T PRK08356         83 LIRLAVDKKRNCKNIAIDG-VRSRGEVEAIKRMG-GKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKLY  160 (195)
T ss_pred             HHHHHHHHhccCCeEEEcC-cCCHHHHHHHHhcC-CEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHhh
Confidence              11222222333456664 46666666776642 3799999999999999998864311    2222222221111111


Q ss_pred             ---CCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        175 ---PLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       175 ---~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                         .+.+.++++|+++.+.+++..++.+.+
T Consensus       161 ~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~  190 (195)
T PRK08356        161 HTTKLKDKADFVIVNEGTLEELRKKVEEIL  190 (195)
T ss_pred             hhhhHHHhCcEEEECCCCHHHHHHHHHHHH
Confidence               112458888888899999998887654

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.32  E-value=1.8e-12  Score=118.56  Aligned_cols=133  Identities=15%  Similarity=0.191  Sum_probs=102.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      .++++++++.|+.          .+++.+.++++.+|+++.|+|+|||||||+.+++|+..    |...+++..+..+  
T Consensus         3 ~l~i~~v~~~f~~----------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p--   70 (248)
T COG1116           3 LLEIEGVSKSFGG----------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP--   70 (248)
T ss_pred             eEEEEeeEEEeCc----------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC--
Confidence            5789999999987          45788888999999999999999999999999999965    7778888877332  


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                        .-..++.||++...+|.+..+|+...+...+.+    .....+...+.+...+  +.=|-+.-|..+...++||-
T Consensus        71 --~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~----~~e~~~~a~~~L~~Vg--L~~~~~~~P~qLSGGMrQRV  139 (248)
T COG1116          71 --GPDIGYVFQEDALLPWLTVLDNVALGLELRGKS----KAEARERAKELLELVG--LAGFEDKYPHQLSGGMRQRV  139 (248)
T ss_pred             --CCCEEEEeccCcccchhhHHhhheehhhccccc----hHhHHHHHHHHHHHcC--CcchhhcCccccChHHHHHH
Confidence              235689999999999999999998887655411    1111123344555443  45566778899999999886

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.31  E-value=2e-11  Score=108.65  Aligned_cols=159  Identities=15%  Similarity=0.171  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCC-----CCCCc--CChhHHHHHHHHHHHhhhCCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQ-----PLNDE--DRRPWLNNINRIIHQLNVDNL  111 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~  111 (433)
                      +.|+|+|+|||||||+|+.|+++++++|+|++++.+.........+.     ..+..  ..+.....+...+...-... 
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~-   79 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA-   79 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC-
Confidence            57999999999999999999999999999999987543322211110     00110  00111122333333321122 


Q ss_pred             cEEEEcCcccHHHHHHHH----hcC-C-eEEEEEEcCHHHHHHHHHHhhC-CCCCHHhHHHHHhhccCCCC----CCCCC
Q psy16778        112 TGVLVCSALRRNYRDIIR----NNN-R-VVFIYLKAEFGVILSRLQKRAE-HFMPADLLESQFQTLEEPDP----LVEPD  180 (433)
Q Consensus       112 ~~Vi~~~~~~~~~~~~l~----~~~-~-~~vv~L~~~~e~l~~Rl~~R~~-~~~~~~~l~~~~~~~~~~~~----~~~~~  180 (433)
                      ++|+++.+...+..+.++    +.+ . ..++.+..+.+.++.|+..|.. .....+.+...+..++....    +..  
T Consensus        80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~pli~~y~--  157 (178)
T COG0563          80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKVYHEQTAPLIEYYS--  157 (178)
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHHHHhcccchhhhhe--
Confidence            688888876655544444    322 3 7899999999999999998852 22334455555444443211    121  


Q ss_pred             eEEEccCCCHHHHHHHHhcCC
Q psy16778        181 VRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       181 ~~~Id~~~~~ee~~~~i~~~l  201 (433)
                       +.|+...+++++.+.+.+.+
T Consensus       158 -~~id~~~~i~~v~~~i~~~l  177 (178)
T COG0563         158 -VTIDGSGEIEEVLADILKAL  177 (178)
T ss_pred             -eeccCCCCHHHHHHHHHHhh
Confidence             67788899999998887653

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=99.31  E-value=1.5e-11  Score=105.95  Aligned_cols=144  Identities=17%  Similarity=0.246  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCS  118 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~  118 (433)
                      |+|+|||.||+||||+++.|+ ++|+.+++..++....   +.-.+++-.........+.+...+...+. ..++||+..
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~---~~~~~~de~r~s~~vD~d~~~~~le~~~~-~~~~Ivd~H   75 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN---GLYTEYDELRKSVIVDVDKLRKRLEELLR-EGSGIVDSH   75 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc---CCeeccCCccceEEeeHHHHHHHHHHHhc-cCCeEeech
Confidence            689999999999999999999 7999999988875432   11222221111222223344444444432 235666432


Q ss_pred             cccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHH---------H-hhccCCCCCCCCCeEEEccC-
Q psy16778        119 ALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQ---------F-QTLEEPDPLVEPDVRTVSVN-  187 (433)
Q Consensus       119 ~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~---------~-~~~~~~~~~~~~~~~~Id~~-  187 (433)
                           +...+...  .+||.|+++++.|.+||+.|+   ++.+.+..+         + +..+.+     .+.+.|+++ 
T Consensus        76 -----~~hl~~~~--dlVvVLR~~p~~L~~RLk~RG---y~~eKI~ENveAEi~~vi~~EA~E~~-----~~v~evdtt~  140 (180)
T COG1936          76 -----LSHLLPDC--DLVVVLRADPEVLYERLKGRG---YSEEKILENVEAEILDVILIEAVERF-----EAVIEVDTTN  140 (180)
T ss_pred             -----hhhcCCCC--CEEEEEcCCHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHHHHHHhc-----CceEEEECCC
Confidence                 11122212  589999999999999999997   332222222         1 222222     278999998 


Q ss_pred             CCHHHHHHHHhcCCC
Q psy16778        188 EPLEGIVSKSAIMPP  202 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~  202 (433)
                      .+++++.+.|.+.+.
T Consensus       141 ~s~ee~~~~i~~ii~  155 (180)
T COG1936         141 RSPEEVAEEIIDIIG  155 (180)
T ss_pred             CCHHHHHHHHHHHHc
Confidence            999999999988876

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.30  E-value=8.4e-12  Score=113.25  Aligned_cols=156  Identities=20%  Similarity=0.172  Sum_probs=88.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc------c--ccCC-C----------------CCCcCCh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK------M--SAKQ-P----------------LNDEDRR   93 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~------~--~~~~-~----------------~~~~~~~   93 (433)
                      .+|+|+|++||||||+++.|++ +|++++|.|.+........      +  ..|. .                |+++...
T Consensus         3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~   81 (194)
T PRK00081          3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR   81 (194)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence            5899999999999999999998 8999999998853311000      0  0011 1                1111111


Q ss_pred             hHHHH-----HHHHHHHhhhCC---CcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHH
Q psy16778         94 PWLNN-----INRIIHQLNVDN---LTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLES  165 (433)
Q Consensus        94 ~~~~~-----~~~~~~~~~~~~---~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~  165 (433)
                      .+++.     +...+.......   ..+|++..-+.+..   +.+.. +.+|++++|++++.+|+.+|.+  ...+.+..
T Consensus        82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~~---~~~~~-D~vi~V~a~~e~~~~Rl~~R~~--~s~e~~~~  155 (194)
T PRK00081         82 KKLEAILHPLIREEILEQLQEAESSPYVVLDIPLLFENG---LEKLV-DRVLVVDAPPETQLERLMARDG--LSEEEAEA  155 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHhhcCC---chhhC-CeEEEEECCHHHHHHHHHHcCC--CCHHHHHH
Confidence            11111     111122222211   23444443333321   11111 4799999999999999999864  22233333


Q ss_pred             HHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        166 QFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ....+.........++++|+++.+++++..++.+.+
T Consensus       156 ri~~Q~~~~~~~~~ad~vI~N~g~~e~l~~qv~~i~  191 (194)
T PRK00081        156 IIASQMPREEKLARADDVIDNNGDLEELRKQVERLL  191 (194)
T ss_pred             HHHHhCCHHHHHHhCCEEEECCCCHHHHHHHHHHHH
Confidence            322222211112347899999999999998887553

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.30  E-value=1.8e-11  Score=111.11  Aligned_cols=162  Identities=16%  Similarity=0.112  Sum_probs=91.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc-----ccc--ccCC----------------CCCCcCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI-----DKM--SAKQ----------------PLNDEDR   92 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~-----~~~--~~~~----------------~~~~~~~   92 (433)
                      ..+.+|+|||.+||||||+++.|++.+|+.++|.|.+......     ..+  ..|.                .|+++..
T Consensus         4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~   83 (204)
T PRK14733          4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEA   83 (204)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHH
Confidence            3457899999999999999999999899999999988532110     000  0011                1222111


Q ss_pred             hhHHH-----HHHHHHHHhhh-CCCcE-EEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHH
Q psy16778         93 RPWLN-----NINRIIHQLNV-DNLTG-VLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLES  165 (433)
Q Consensus        93 ~~~~~-----~~~~~~~~~~~-~~~~~-Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~  165 (433)
                      ...++     .+...+..... .+..+ |++..-+.+.... ..... +.+++++||.+++.+|+.+|.+.  ..+....
T Consensus        84 ~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~-~~~~~-D~vi~V~a~~e~ri~Rl~~Rd~~--s~~~a~~  159 (204)
T PRK14733         84 KKWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFR-HYDYL-KKVIVIKADLETRIRRLMERDGK--NRQQAVA  159 (204)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccCc-hhhhC-CEEEEEECCHHHHHHHHHHcCCC--CHHHHHH
Confidence            11111     11111222222 22234 4444333332110 01111 47999999999999999999653  3333333


Q ss_pred             HHhhccCCCCCCCCCeEEEccCC-CHHHHHHHHhcCC
Q psy16778        166 QFQTLEEPDPLVEPDVRTVSVNE-PLEGIVSKSAIMP  201 (433)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~Id~~~-~~ee~~~~i~~~l  201 (433)
                      ....+.......+.++++|+++. +.+++..++...+
T Consensus       160 ri~~Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~  196 (204)
T PRK14733        160 FINLQISDKEREKIADFVIDNTELTDQELESKLITTI  196 (204)
T ss_pred             HHHhCCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHH
Confidence            33222221111334889999998 9999998887544

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.29  E-value=1.1e-11  Score=109.88  Aligned_cols=154  Identities=21%  Similarity=0.205  Sum_probs=89.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC-----cCChhHHHHHHHHHHHhhhCCCcE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND-----EDRRPWLNNINRIIHQLNVDNLTG  113 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  113 (433)
                      ++|+|+|++||||||+++.|++.+|+++++.|++......   ..|.....     .........+...+......+..+
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   77 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAA---KMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNV   77 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHH---HcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCE
Confidence            5799999999999999999999999999999876432110   11211110     000111122333344444344567


Q ss_pred             EEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC--HHhHHHH----HhhccCCCC----CCCCCeEE
Q psy16778        114 VLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP--ADLLESQ----FQTLEEPDP----LVEPDVRT  183 (433)
Q Consensus       114 Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~~l~~~----~~~~~~~~~----~~~~~~~~  183 (433)
                      ||++....  +  .+.... .++|||++|++++.+|+.+|.+....  ...+..+    .+.+...+.    ....-+++
T Consensus        78 Vi~g~~~~--~--~~~~~~-d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl~  152 (171)
T TIGR02173        78 VLESRLAG--W--IVREYA-DVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDLV  152 (171)
T ss_pred             EEEecccc--e--eecCCc-CEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEE
Confidence            77654311  1  112212 47899999999999999998753221  1111111    111111111    12335799


Q ss_pred             EccC-CCHHHHHHHHhcCC
Q psy16778        184 VSVN-EPLEGIVSKSAIMP  201 (433)
Q Consensus       184 Id~~-~~~ee~~~~i~~~l  201 (433)
                      ||++ .++++ ++.|.+.+
T Consensus       153 i~t~~~~~~~-~~~i~~~~  170 (171)
T TIGR02173       153 INTSNWDPNN-VDIILDAL  170 (171)
T ss_pred             EECCCCCHHH-HHHHHHHh
Confidence            9999 99999 99887653

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>COG0645 Predicted kinase [General function prediction only]

Probab=99.29  E-value=5.9e-11  Score=102.25  Aligned_cols=136  Identities=23%  Similarity=0.198  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc----cccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI----DKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGV  114 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  114 (433)
                      +.+++.|.||+||||+++.|++.+|..+|.+|.+......    .... .-.+........|..+......++..|.++|
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~-~g~ys~~~~~~vy~~l~~~A~l~l~~G~~VV   80 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGP-AGLYSPAATAAVYDELLGRAELLLSSGHSVV   80 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCC-CCCCcHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence            5788999999999999999999999999999998643221    0111 1123333444556666777778889999999


Q ss_pred             EEcCcccHHHHHHHHhcCC-----eEEEEEEcCHHHHHHHHHHhhCCCC--CHHhHHHHHhhccCCCC
Q psy16778        115 LVCSALRRNYRDIIRNNNR-----VVFIYLKAEFGVILSRLQKRAEHFM--PADLLESQFQTLEEPDP  175 (433)
Q Consensus       115 i~~~~~~~~~~~~l~~~~~-----~~vv~L~~~~e~l~~Rl~~R~~~~~--~~~~l~~~~~~~~~~~~  175 (433)
                      +|.+...+..|+.......     +..|++.++.+++..|+.+|.+...  ....+..+....+.+..
T Consensus        81 lDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~sDA~~~il~~q~~~~~~~~~  148 (170)
T COG0645          81 LDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDASDATFDILRVQLAEDEPWTE  148 (170)
T ss_pred             EecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcccchHHHHHHHHhhhCCccc
Confidence            9999988888776666543     6779999999999999999987444  35567777777777653

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.29  E-value=1.9e-11  Score=130.26  Aligned_cols=160  Identities=18%  Similarity=0.247  Sum_probs=113.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVD  109 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (433)
                      ..++.+|+++|++||||||+++.|++++     +..+++.|.++...     ..+..+..+....+++.+.+.......+
T Consensus       457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l-----~~~~~~~~~~r~~~~~~l~~~a~~~~~~  531 (632)
T PRK05506        457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGL-----NRDLGFSDADRVENIRRVAEVARLMADA  531 (632)
T ss_pred             CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhcc-----CCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            3468999999999999999999999997     45889999986432     2345566666677777777777777788


Q ss_pred             CCcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHHHHhhCCCCC--HHhHHHHHhhccCCCCCCCCCeEEE
Q psy16778        110 NLTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRLQKRAEHFMP--ADLLESQFQTLEEPDPLVEPDVRTV  184 (433)
Q Consensus       110 ~~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~I  184 (433)
                      |..+|+++......+|+.+++...   +.+|||+++.+++.+|. .| +....  .+.+...+. ...+|+.-+.++++|
T Consensus       532 G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~-~r-~L~~~~~~~~l~~l~~-~r~~y~~P~~a~~~I  608 (632)
T PRK05506        532 GLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD-PK-GLYAKARAGEIKNFTG-IDSPYEAPENPELRL  608 (632)
T ss_pred             CCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC-Cc-chhhhccccccccccc-cccCCCCCCCCeEEE
Confidence            888899988877888888886542   68999999999999994 22 22111  111221111 112221003478999


Q ss_pred             ccC-CCHHHHHHHHhcCCC
Q psy16778        185 SVN-EPLEGIVSKSAIMPP  202 (433)
Q Consensus       185 d~~-~~~ee~~~~i~~~l~  202 (433)
                      +++ .+++++++.|.+.+.
T Consensus       609 d~~~~s~~e~v~~Ii~~l~  627 (632)
T PRK05506        609 DTTGRSPEELAEQVLELLR  627 (632)
T ss_pred             eCCCCCHHHHHHHHHHHHH
Confidence            996 899999999887663

>KOG3079|consensus

Probab=99.29  E-value=3.4e-11  Score=104.56  Aligned_cols=170  Identities=9%  Similarity=0.120  Sum_probs=109.5

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccc-ccccCCCCCC---cC----ChhHHHHHHHHHH
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNID-KMSAKQPLND---ED----RRPWLNNINRIIH  104 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~-~~~~~~~~~~---~~----~~~~~~~~~~~~~  104 (433)
                      ...+++.+|++.|.|||||-|+...+++++|+.|++++++.+..... +...|..+++   ..    .......+++.+.
T Consensus         3 ~~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~   82 (195)
T KOG3079|consen    3 PKLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMR   82 (195)
T ss_pred             CcccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHH
Confidence            34677889999999999999999999999999999999997543221 1111111111   00    1111223333333


Q ss_pred             HhhhCCCcEEEEcCcccHHHHHHHHhcC--C-eEEEEEEcCHHHHHHHHHHhhCC----CCCHHhHHHHHhhccCCCC--
Q psy16778        105 QLNVDNLTGVLVCSALRRNYRDIIRNNN--R-VVFIYLKAEFGVILSRLQKRAEH----FMPADLLESQFQTLEEPDP--  175 (433)
Q Consensus       105 ~~~~~~~~~Vi~~~~~~~~~~~~l~~~~--~-~~vv~L~~~~e~l~~Rl~~R~~~----~~~~~~l~~~~~~~~~~~~--  175 (433)
                      .....+ +++|++.+........+....  . .+++|++|+.+++.+|+..|+..    ....+.++.+++.+.....  
T Consensus        83 ~~~~~~-~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pv  161 (195)
T KOG3079|consen   83 SSGDSN-GFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPV  161 (195)
T ss_pred             hcCCCC-eEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHH
Confidence            333222 388888887776665555433  2 68999999999999999999743    2234555555544432111  


Q ss_pred             ----CCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        176 ----LVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       176 ----~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                          ..+.....|+.+.+++++...+...+..
T Consensus       162 i~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~  193 (195)
T KOG3079|consen  162 IEYYEKKGKLLKINAERSVDDVFEEVVTAIDA  193 (195)
T ss_pred             HHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence                1223566888889999999988777654

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.27  E-value=2.3e-10  Score=102.48  Aligned_cols=155  Identities=18%  Similarity=0.146  Sum_probs=84.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC----eEEeCCCCCccccccccccCCCCCCcCChhHHH----------------
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGV----KFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN----------------   97 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~----~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------   97 (433)
                      +.+|+|+|+|||||||+++.|+..++.    .++..+......     ..|..+.......+..                
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS-----AGGENHIALSTEEFDHREDGGAFALSWQAHGL   75 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC-----CCCccccccCHHHHHHHHHCCCEEEEEeecCc
Confidence            468999999999999999999998743    232221111000     0000000000000000                


Q ss_pred             --HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCC
Q psy16778         98 --NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPD  174 (433)
Q Consensus        98 --~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~  174 (433)
                        .....+...+.++..+|++++..   ....+++... ..+|||+++.+++.+|+.+|.+ +. .+.+...+.......
T Consensus        76 ~~g~~~~i~~~~~~g~~vv~~g~~~---~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~-~~-~~~~~~rl~~~~~~~  150 (179)
T TIGR02322        76 SYGIPAEIDQWLEAGDVVVVNGSRA---VLPEARQRYPNLLVVNITASPDVLAQRLAARGR-ES-REEIEERLARSARFA  150 (179)
T ss_pred             cccChHHHHHHHhcCCEEEEECCHH---HHHHHHHHCCCcEEEEEECCHHHHHHHHHHcCC-CC-HHHHHHHHHHHhhcc
Confidence              01112333445666666666532   2233333222 5799999999999999998864 22 233333333222211


Q ss_pred             CCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        175 PLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       175 ~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                       ....+.++++++.+++++..+|.+.+.+
T Consensus       151 -~~~~~~~vi~~~~~~ee~~~~i~~~l~~  178 (179)
T TIGR02322       151 -AAPADVTTIDNSGSLEVAGETLLRLLRK  178 (179)
T ss_pred             -cccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence             0122444477778999999999887643

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR00152 dephospho-CoA kinase

Probab=99.27  E-value=1.1e-11  Score=112.05  Aligned_cols=153  Identities=20%  Similarity=0.284  Sum_probs=88.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------ccc--ccC-----------------CCCCCcCChh
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------DKM--SAK-----------------QPLNDEDRRP   94 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~~~--~~~-----------------~~~~~~~~~~   94 (433)
                      +|+|+|.+||||||+++.|++..|++++|.|.+......      ..+  ..|                 ..|.++....
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~   80 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK   80 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence            489999999999999999999767999999988422100      000  001                 1122221111


Q ss_pred             HHH---------HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHH
Q psy16778         95 WLN---------NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLES  165 (433)
Q Consensus        95 ~~~---------~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~  165 (433)
                      .++         .+...+......+..+|++..-+.+.   .+.... ..+++++++.+++.+|+.+|.+  ...+.+..
T Consensus        81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~---~~~~~~-D~vv~V~~~~~~~~~Rl~~R~~--~s~~~~~~  154 (188)
T TIGR00152        81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFEN---KLRSLC-DRVIVVDVSPQLQLERLMQRDN--LTEEEVQK  154 (188)
T ss_pred             HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhC---CcHHhC-CEEEEEECCHHHHHHHHHHcCC--CCHHHHHH
Confidence            111         11122222222222344433322221   122222 4789999999999999999974  22344444


Q ss_pred             HHhhccCCCCCCCCCeEEEccCCCHHHHHHHHh
Q psy16778        166 QFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSA  198 (433)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~  198 (433)
                      .+..+.........++++|+++.+++++..++.
T Consensus       155 r~~~q~~~~~~~~~ad~vI~N~~~~e~l~~~~~  187 (188)
T TIGR00152       155 RLASQMDIEERLARADDVIDNSATLADLVKQLE  187 (188)
T ss_pred             HHHhcCCHHHHHHhCCEEEECCCCHHHHHHHHh
Confidence            444443322223348899999999999998874

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.26  E-value=4.5e-12  Score=112.97  Aligned_cols=97  Identities=22%  Similarity=0.193  Sum_probs=80.5

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS   76 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~   76 (433)
                      +++++.||++.||.          ...+++.++++.+|.+++|+|||||||||+.|.|...-    |...++++.+....
T Consensus         1 ~mi~i~~l~K~fg~----------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~   70 (240)
T COG1126           1 MMIEIKNLSKSFGD----------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK   70 (240)
T ss_pred             CeEEEEeeeEEeCC----------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh
Confidence            47899999999998          56888889999999999999999999999999999743    78888886654221


Q ss_pred             cc--cccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778         77 NI--DKMSAKQPLNDEDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        77 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (433)
                      ..  .+...|+.||..+.++.++.++++.....
T Consensus        71 ~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~  103 (240)
T COG1126          71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV  103 (240)
T ss_pred             hHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence            11  23456999999999999999999987654

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.26  E-value=1.7e-11  Score=111.11  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=73.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhh---CCCcE
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNV---DNLTG  113 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~  113 (433)
                      +|+|+|+|||||||+++.|++++|+.+++.|++.+.........+..+..   ......-..+...+...+.   .+.++
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~   80 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF   80 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence            38999999999999999999999999999998864321110000000000   0000001122233333333   24678


Q ss_pred             EEEcCcccHHHHHHHHhcC----C-eEEEEEEcCHHHHHHHHHHhhC
Q psy16778        114 VLVCSALRRNYRDIIRNNN----R-VVFIYLKAEFGVILSRLQKRAE  155 (433)
Q Consensus       114 Vi~~~~~~~~~~~~l~~~~----~-~~vv~L~~~~e~l~~Rl~~R~~  155 (433)
                      |+++.+......+.+.+..    . ..+|+|++|.+++.+|+.+|..
T Consensus        81 vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~  127 (194)
T cd01428          81 ILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI  127 (194)
T ss_pred             EEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence            9998765555544444322    2 6899999999999999999863

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK08233 hypothetical protein; Provisional

Probab=99.26  E-value=7.3e-11  Score=105.71  Aligned_cols=159  Identities=15%  Similarity=0.091  Sum_probs=87.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC-CeEEeCCCCCccccc---c-ccccCCCCCCcCChhHHHHHHHHHHHhhhCC-
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLG-VKFIDGDHLHPQSNI---D-KMSAKQPLNDEDRRPWLNNINRIIHQLNVDN-  110 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg-~~~id~D~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  110 (433)
                      ++.+|+|+|++||||||+++.|++.++ ...+..|.+......   . -...+..+    ....++.+.+.+..+.... 
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~   77 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANY----SEWVLTPLIKDIQELIAKSN   77 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCCh----hhhhhHHHHHHHHHHHcCCC
Confidence            468999999999999999999999995 444445544321100   0 00111111    1112233333344433222 


Q ss_pred             CcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC----HHhHHHHHhh----cc---CCCCCCCC
Q psy16778        111 LTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP----ADLLESQFQT----LE---EPDPLVEP  179 (433)
Q Consensus       111 ~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~----~~~l~~~~~~----~~---~~~~~~~~  179 (433)
                      ..+||..+.......+ +.... ..+|||++|.+++.+|..+|......    ...+...+..    +.   ...  ...
T Consensus        78 ~~~vivd~~~~~~~~~-~~~~~-d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~--~~~  153 (182)
T PRK08233         78 VDYIIVDYPFAYLNSE-MRQFI-DVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTV--KPN  153 (182)
T ss_pred             ceEEEEeeehhhccHH-HHHHc-CEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcC--ccC
Confidence            2455544432222222 22222 48999999999999998777421111    1112222211    11   111  224


Q ss_pred             CeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        180 DVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       180 ~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                      ++++|+++.+++++..++...+.+
T Consensus       154 ~~~vId~~~~~e~i~~~i~~~l~~  177 (182)
T PRK08233        154 ADIVLDGALSVEEIINQIEEELYR  177 (182)
T ss_pred             CeEEEcCCCCHHHHHHHHHHHHHh
Confidence            678899889999999999887654

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=99.23  E-value=4e-11  Score=111.75  Aligned_cols=155  Identities=14%  Similarity=0.107  Sum_probs=90.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------cccc--cC-----------------CCCCCcCCh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------DKMS--AK-----------------QPLNDEDRR   93 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~~~~--~~-----------------~~~~~~~~~   93 (433)
                      .+|+|||.+||||||+++.|.+++|++++|.|.+..+...      ..+.  .|                 ..|.++...
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~   81 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR   81 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999999889999999988432100      0000  01                 112222111


Q ss_pred             hHHHHHHHHHHH--------hh-------------hCCC-cEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHH
Q psy16778         94 PWLNNINRIIHQ--------LN-------------VDNL-TGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQ  151 (433)
Q Consensus        94 ~~~~~~~~~~~~--------~~-------------~~~~-~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~  151 (433)
                      .   .++.+++.        ..             ..+. .+|++..-+.+...  ..... +.+|++++|.+++.+|+.
T Consensus        82 ~---~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~--~~~~~-D~iv~V~a~~e~ri~RL~  155 (244)
T PTZ00451         82 R---ALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKT--FTYFV-SASVVVSCSEERQIERLR  155 (244)
T ss_pred             H---HHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCc--hhhcC-CeEEEEECCHHHHHHHHH
Confidence            1   12221111        11             1222 34444443433211  11111 479999999999999999


Q ss_pred             HhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccC--CCHHHHHHHHhcCC
Q psy16778        152 KRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVN--EPLEGIVSKSAIMP  201 (433)
Q Consensus       152 ~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~--~~~ee~~~~i~~~l  201 (433)
                      +|.+  ...+.+......+.......+.++++|+|+  .+.+++..++.+.+
T Consensus       156 ~R~g--~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~  205 (244)
T PTZ00451        156 KRNG--FSKEEALQRIGSQMPLEEKRRLADYIIENDSADDLDELRGSVCDCV  205 (244)
T ss_pred             HcCC--CCHHHHHHHHHhCCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHH
Confidence            9964  233333333333222221234588999999  99999998887543

>PLN02422 dephospho-CoA kinase

Probab=99.23  E-value=5.8e-11  Score=109.65  Aligned_cols=154  Identities=14%  Similarity=0.140  Sum_probs=90.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------ccc--ccC-----------------CCCCCcCCh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------DKM--SAK-----------------QPLNDEDRR   93 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~~~--~~~-----------------~~~~~~~~~   93 (433)
                      ++|+|||.+||||||+++.|++ +|++++|+|.+......      ..+  ..|                 ..|+++.. 
T Consensus         2 ~~igltG~igsGKstv~~~l~~-~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~-   79 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFKS-SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK-   79 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH-
Confidence            3799999999999999999994 89999999988432100      000  001                 11222211 


Q ss_pred             hHHHHHHHHHHHh------------hhCCCcEEEEcCc-ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCH
Q psy16778         94 PWLNNINRIIHQL------------NVDNLTGVLVCSA-LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPA  160 (433)
Q Consensus        94 ~~~~~~~~~~~~~------------~~~~~~~Vi~~~~-~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~  160 (433)
                        ...++++++..            ...+..+|+...+ +.+...+..   . +.++++++|++++.+|+.+|.+  ...
T Consensus        80 --~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~---~-D~vI~V~a~~e~ri~RL~~R~g--~s~  151 (232)
T PLN02422         80 --RQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDKW---T-KPVVVVWVDPETQLERLMARDG--LSE  151 (232)
T ss_pred             --HHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhhh---C-CEEEEEECCHHHHHHHHHHcCC--CCH
Confidence              12222222211            1123344444333 333221111   1 4799999999999999999964  233


Q ss_pred             HhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        161 DLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      +.+......+.......+.++++|+|+.+.+++..++.+.+.
T Consensus       152 eea~~Ri~~Q~~~eek~~~AD~VI~N~gs~e~L~~qv~~ll~  193 (232)
T PLN02422        152 EQARNRINAQMPLDWKRSKADIVIDNSGSLEDLKQQFQKVLE  193 (232)
T ss_pred             HHHHHHHHHcCChhHHHhhCCEEEECCCCHHHHHHHHHHHHH
Confidence            334333333332211144588999999999999888876653

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.23  E-value=1.7e-11  Score=110.89  Aligned_cols=151  Identities=22%  Similarity=0.197  Sum_probs=90.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc--------cccccCCCCCCcCC--------------hhH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI--------DKMSAKQPLNDEDR--------------RPW   95 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~--------~~~~~~~~~~~~~~--------------~~~   95 (433)
                      .++|+|||.+||||||+++.+++ +|++++|+|.+..+...        .....|..+-++++              ...
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~   80 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA   80 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence            57899999999999999999999 99999999988642100        01112322221111              011


Q ss_pred             HHHHHHHHHHhhhC---------CCcEEEEcCcccHHHHHHHHhcCC----eEEEEEEcCHHHHHHHHHHhhCCCCCHH-
Q psy16778         96 LNNINRIIHQLNVD---------NLTGVLVCSALRRNYRDIIRNNNR----VVFIYLKAEFGVILSRLQKRAEHFMPAD-  161 (433)
Q Consensus        96 ~~~~~~~~~~~~~~---------~~~~Vi~~~~~~~~~~~~l~~~~~----~~vv~L~~~~e~l~~Rl~~R~~~~~~~~-  161 (433)
                      ...++++...+...         ..++++..-       ..|.+...    +.||+++||++++++|+.+|.+  ...+ 
T Consensus        81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~ei-------plL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~--~~~e~  151 (201)
T COG0237          81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEI-------PLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDG--LDEED  151 (201)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEc-------hHHHhccccccCCEEEEEECCHHHHHHHHHhcCC--CCHHH
Confidence            11222222221111         111222222       12222211    3799999999999999999973  2222 


Q ss_pred             ---hHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        162 ---LLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       162 ---~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                         .+..+....+.+.    .++++++++.+++++.+++.+.+.
T Consensus       152 ~~~~~~~Q~~~~ek~~----~ad~vi~n~~~i~~l~~~i~~~~~  191 (201)
T COG0237         152 AEARLASQRDLEEKLA----LADVVIDNDGSIENLLEQIEKLLK  191 (201)
T ss_pred             HHHHHHhcCCHHHHHh----hcCChhhcCCCHHHHHHHHHHHHH
Confidence               3334444444433    388999999999998888876654

>KOG3347|consensus

Probab=99.22  E-value=9.7e-11  Score=98.00  Aligned_cols=107  Identities=18%  Similarity=0.290  Sum_probs=74.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      ...+.|+|+|.||+||||++..||+.+|+.+|...++.+....   ..|++-...-..-.-+.+-+.+...+..| ++||
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l---~~gyDE~y~c~i~DEdkv~D~Le~~m~~G-g~IV   80 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNL---YEGYDEEYKCHILDEDKVLDELEPLMIEG-GNIV   80 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcc---hhcccccccCccccHHHHHHHHHHHHhcC-CcEE
Confidence            3457899999999999999999999999999999998755322   22333222211222234445555555555 6888


Q ss_pred             EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778        116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus       116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      +..+   ..+.|.        .+||.|+++.++|.+||..|+
T Consensus        81 DyHgCd~Fperwf--------dlVvVLr~~~s~LY~RL~sRg  114 (176)
T KOG3347|consen   81 DYHGCDFFPERWF--------DLVVVLRTPNSVLYDRLKSRG  114 (176)
T ss_pred             eecccCccchhhe--------eEEEEEecCchHHHHHHHHcC
Confidence            8543   323221        378999999999999999986

>KOG0635|consensus

Probab=99.22  E-value=8.1e-11  Score=98.43  Aligned_cols=157  Identities=20%  Similarity=0.241  Sum_probs=105.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CC--eEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL---GV--KFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVD  109 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l---g~--~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (433)
                      ..+|..|+|+|.|||||||+|-.|++.|   |.  ..+|+|+++..     +.....|..+...+..+++.++.+-+...
T Consensus        28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhG-----LN~DL~F~a~dR~ENIRRigeVaKLFADa  102 (207)
T KOG0635|consen   28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHG-----LNKDLGFKAEDRNENIRRIGEVAKLFADA  102 (207)
T ss_pred             cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccc-----cccccCcchhhhhhhHHHHHHHHHHHhcc
Confidence            4688999999999999999999999988   43  36899998643     34566777777888888988888877777


Q ss_pred             CCcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHH------HHhhCCCCCHHhHHHHHhhccCCCCCCCCC
Q psy16778        110 NLTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRL------QKRAEHFMPADLLESQFQTLEEPDPLVEPD  180 (433)
Q Consensus       110 ~~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl------~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~  180 (433)
                      +-.+|-+.-...+..|+..++..+   ++.||+++|.+++..|-      .+|.+....       +.-.+.||.--..+
T Consensus       103 g~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKg-------FTGIddPYEaP~~c  175 (207)
T KOG0635|consen  103 GVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKG-------FTGIDDPYEAPLNC  175 (207)
T ss_pred             ceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchhHHHHHhcccccc-------cccCCCcccCCCCc
Confidence            644444433333444555555433   88999999999988773      112211111       11223343211126


Q ss_pred             eEEEccC--CCHHHHHHHHhcCCCC
Q psy16778        181 VRTVSVN--EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       181 ~~~Id~~--~~~ee~~~~i~~~l~~  203 (433)
                      .+++...  .+++++++.|...|..
T Consensus       176 Ei~l~~~~~~sp~~mae~iv~YL~~  200 (207)
T KOG0635|consen  176 EIVLKSHESSSPEEMAEIIVSYLDN  200 (207)
T ss_pred             EEEEccCCCCCHHHHHHHHHHHHhh
Confidence            6777765  6677799988877654

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.22  E-value=1.3e-10  Score=102.58  Aligned_cols=149  Identities=21%  Similarity=0.347  Sum_probs=88.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CCeEEe--CCCCCccccccccccCCCCCCcCChhH-HHHHHHHHHHhhhCCCc
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL---GVKFID--GDHLHPQSNIDKMSAKQPLNDEDRRPW-LNNINRIIHQLNVDNLT  112 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l---g~~~id--~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  112 (433)
                      +.|+++|+|||||||+|+.|++.|   ++..++  .|-...-    .-....+...+..... ....+..+...+. +.-
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i----~~DEslpi~ke~yres~~ks~~rlldSalk-n~~   76 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGI----LWDESLPILKEVYRESFLKSVERLLDSALK-NYL   76 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhhe----ecccccchHHHHHHHHHHHHHHHHHHHHhc-ceE
Confidence            578999999999999999999988   343333  3222100    0011111111111111 1122222333332 334


Q ss_pred             EEEEcCcccHHHHHHHH----hcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCC--CCCCeEEEc
Q psy16778        113 GVLVCSALRRNYRDIIR----NNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPL--VEPDVRTVS  185 (433)
Q Consensus       113 ~Vi~~~~~~~~~~~~l~----~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~Id  185 (433)
                      ||++.......+|..|.    +... .-+||+.++.+++++|...|+ .+.+.+.+...+.++++|...  .+..-++|+
T Consensus        77 VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erg-epip~Evl~qly~RfEePn~~~rWDspll~id  155 (261)
T COG4088          77 VIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERG-EPIPEEVLRQLYDRFEEPNPDRRWDSPLLVID  155 (261)
T ss_pred             EEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCC-CCCCHHHHHHHHHhhcCCCCCccccCceEEEe
Confidence            66666665444443322    2222 679999999999999997775 688899999999999987542  334678888


Q ss_pred             cCCCHHHH
Q psy16778        186 VNEPLEGI  193 (433)
Q Consensus       186 ~~~~~ee~  193 (433)
                      +.....+.
T Consensus       156 ~~d~~t~~  163 (261)
T COG4088         156 DSDVSTEV  163 (261)
T ss_pred             cccccccc
Confidence            54333333

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=99.22  E-value=2.5e-11  Score=111.33  Aligned_cols=158  Identities=16%  Similarity=0.196  Sum_probs=91.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------ccc--ccC---------------------CCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------DKM--SAK---------------------QPL   87 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~~~--~~~---------------------~~~   87 (433)
                      .+.+|+|||.+||||||+++.|.+ +|+.++|.|.+......      ...  ..|                     +.|
T Consensus         4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf   82 (208)
T PRK14731          4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF   82 (208)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence            347899999999999999999997 89999999965321100      000  001                     122


Q ss_pred             CCcCChhHHH---------HHHHHHHHhhhCCCcEEEEcCc-ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCC
Q psy16778         88 NDEDRRPWLN---------NINRIIHQLNVDNLTGVLVCSA-LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHF  157 (433)
Q Consensus        88 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~Vi~~~~-~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~  157 (433)
                      +++.....++         .+...+......+..+|+...+ +.+....   ... ..++++.+|.+++.+|+.+|++. 
T Consensus        83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~~~---~~~-d~ii~V~a~~e~~~~Rl~~R~~~-  157 (208)
T PRK14731         83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESGGD---AGL-DFIVVVAADTELRLERAVQRGMG-  157 (208)
T ss_pred             CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecCch---hcC-CeEEEEECCHHHHHHHHHHcCCC-
Confidence            2221111111         1112222222344456654444 2232111   111 47899999999999999999642 


Q ss_pred             CCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        158 MPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       158 ~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                       ..+.+....+.+.......+.++++|+++.+++++..++.+.+
T Consensus       158 -s~e~~~~Ri~~q~~~~~~~~~ad~vI~N~g~~e~l~~~i~~~~  200 (208)
T PRK14731        158 -SREEIRRRIAAQWPQEKLIERADYVIYNNGTLDELKAQTEQLY  200 (208)
T ss_pred             -CHHHHHHHHHHcCChHHHHHhCCEEEECCCCHHHHHHHHHHHH
Confidence             3344443333322211112237899999999999999887654

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.21  E-value=3.7e-11  Score=109.47  Aligned_cols=156  Identities=15%  Similarity=0.169  Sum_probs=89.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCc----ccc--cccc--ccCCCCCCcCC--------------hhHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHP----QSN--IDKM--SAKQPLNDEDR--------------RPWL   96 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~----~~~--~~~~--~~~~~~~~~~~--------------~~~~   96 (433)
                      .+|+|+|.+||||||+++.|+. +|++++|+|.+..    +..  ...+  ..|..+..+.+              ....
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~   80 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT   80 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence            4799999999999999999998 7999999997531    100  0100  11222221111              0111


Q ss_pred             HHHHHHHH------------HhhhCCCcEEEEcCc-ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhH
Q psy16778         97 NNINRIIH------------QLNVDNLTGVLVCSA-LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLL  163 (433)
Q Consensus        97 ~~~~~~~~------------~~~~~~~~~Vi~~~~-~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l  163 (433)
                      ..++.+++            .....+..+++...+ +.+....   ... +.+||+++|++++.+|+.+|.+  .+.+.+
T Consensus        81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~g~~---~~~-D~vi~V~a~~e~ri~Rl~~R~g--~s~e~~  154 (200)
T PRK14734         81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEKGLD---RKM-DLVVVVDVDVEERVRRLVEKRG--LDEDDA  154 (200)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEcCcc---ccC-CeEEEEECCHHHHHHHHHHcCC--CCHHHH
Confidence            11222211            111233334443333 2221111   111 4799999999999999999864  333444


Q ss_pred             HHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        164 ESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ...+..+.......+.++++|+++.+++++..++.+.+
T Consensus       155 ~~ri~~Q~~~~~k~~~ad~vI~N~g~~e~l~~~v~~~~  192 (200)
T PRK14734        155 RRRIAAQIPDDVRLKAADIVVDNNGTREQLLAQVDGLI  192 (200)
T ss_pred             HHHHHhcCCHHHHHHhCCEEEECcCCHHHHHHHHHHHH
Confidence            44444333322223458899999999999988776543

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.20  E-value=1.2e-10  Score=101.00  Aligned_cols=106  Identities=26%  Similarity=0.376  Sum_probs=76.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEE
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGV  114 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  114 (433)
                      +|+|+|.+||||||+++.|++.+   |  ..+++.|.+...     +.....+........++.+...+..+..+|..+|
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~-----l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VI   75 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHG-----LNKDLGFSREDREENIRRIAEVAKLLADAGLIVI   75 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHh-----hhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEE
Confidence            47899999999999999999998   5  456787776432     1112233333334445555555556667888889


Q ss_pred             EEcCcccHHHHHHHHhcC--C-eEEEEEEcCHHHHHHHH
Q psy16778        115 LVCSALRRNYRDIIRNNN--R-VVFIYLKAEFGVILSRL  150 (433)
Q Consensus       115 i~~~~~~~~~~~~l~~~~--~-~~vv~L~~~~e~l~~Rl  150 (433)
                      ++++.....+|..+++..  . +.++||++|.+++.+|.
T Consensus        76 id~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~  114 (149)
T cd02027          76 AAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRD  114 (149)
T ss_pred             EccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhC
Confidence            998887777777777654  2 78999999999999995

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR00017 cmk cytidylate kinase

Probab=99.19  E-value=2.7e-10  Score=104.91  Aligned_cols=156  Identities=17%  Similarity=0.201  Sum_probs=90.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccccc-----------------ccCCCCCCcCCh-------
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKM-----------------SAKQPLNDEDRR-------   93 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~-----------------~~~~~~~~~~~~-------   93 (433)
                      .++|+|+|++||||||+++.|++++|+.+++++.+++......+                 ..++.+......       
T Consensus         2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   81 (217)
T TIGR00017         2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNG   81 (217)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence            47899999999999999999999999999999977532111101                 112222111100       


Q ss_pred             ----------------------hH-HHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHH
Q psy16778         94 ----------------------PW-LNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL  150 (433)
Q Consensus        94 ----------------------~~-~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl  150 (433)
                                            +. ...+.+....+... .++|+++--..-.   .+...  .+.|||++|+++..+|.
T Consensus        82 ~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~-~~~Vi~Gr~~~~~---v~~~a--~~~ifl~a~~~~Ra~Rr  155 (217)
T TIGR00017        82 EDVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKN-DGIIADGRDIGTV---VFPNA--EVKIFLDASVEERAKRR  155 (217)
T ss_pred             cchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-CCEEEEEcCcceE---EeCCC--CEEEEEECCHHHHHHHH
Confidence                                  00 01122223333323 3677765420000   12222  48999999999988887


Q ss_pred             HHhhCC---CCCHHhHHHHHhhccC--------CCCCCCCCeEEEccC-CCHHHHHHHHhcC
Q psy16778        151 QKRAEH---FMPADLLESQFQTLEE--------PDPLVEPDVRTVSVN-EPLEGIVSKSAIM  200 (433)
Q Consensus       151 ~~R~~~---~~~~~~l~~~~~~~~~--------~~~~~~~~~~~Id~~-~~~ee~~~~i~~~  200 (433)
                      ..|...   ....+.+...+..++.        +.. ....+++||++ .+++++++.|.+.
T Consensus       156 ~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~-~a~~~i~Idts~l~ieevv~~I~~~  216 (217)
T TIGR00017       156 YKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLK-KADDALYLDTSNLSIDEVVEKILEY  216 (217)
T ss_pred             HHHHhccCCCCCHHHHHHHHHHHHhcccccccCccc-CCCCeEEEECCCCCHHHHHHHHHHh
Confidence            666422   2222333333333321        111 33466889998 9999999998754

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=99.18  E-value=3.1e-10  Score=108.55  Aligned_cols=143  Identities=21%  Similarity=0.267  Sum_probs=85.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHh-hhCCCcEEE
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQL-NVDNLTGVL  115 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Vi  115 (433)
                      ...+|+|+|++||||||+++.|.. +|+.++|.-..                     ..+..+.+.+... ....-.+++
T Consensus         5 ~~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~d~~~~---------------------~L~~~l~~~~~~~~~~~~~av~i   62 (288)
T PRK05416          5 PMRLVIVTGLSGAGKSVALRALED-LGYYCVDNLPP---------------------SLLPKLVELLAQSGGIRKVAVVI   62 (288)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHH-cCCeEECCcCH---------------------HHHHHHHHHHHhcCCCCCeEEEE
Confidence            346899999999999999999975 58877743221                     1122222222221 112224455


Q ss_pred             EcCc--c---cHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHH-hhCCCCC--HHhHHHHHhhccCCCCCCCCCeEEEcc
Q psy16778        116 VCSA--L---RRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQK-RAEHFMP--ADLLESQFQTLEEPDPLVEPDVRTVSV  186 (433)
Q Consensus       116 ~~~~--~---~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~-R~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~Id~  186 (433)
                      +...  .   .......+++.+- ..+|||+++.+++.+|+.. |..+|..  ....+...+.++....+++.++++|++
T Consensus        63 D~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivIDT  142 (288)
T PRK05416         63 DVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVIDT  142 (288)
T ss_pred             ccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEEC
Confidence            5432  1   2233445555432 5789999999999999975 3334432  122232333333221123457899999


Q ss_pred             C-CCHHHHHHHHhcCC
Q psy16778        187 N-EPLEGIVSKSAIMP  201 (433)
Q Consensus       187 ~-~~~ee~~~~i~~~l  201 (433)
                      + .+++++++.|.+.+
T Consensus       143 s~ls~~el~e~I~~~l  158 (288)
T PRK05416        143 SELSVHQLRERIRERF  158 (288)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            8 89999999997654

>PRK08118 topology modulation protein; Reviewed

Probab=99.18  E-value=2.6e-10  Score=100.81  Aligned_cols=99  Identities=19%  Similarity=0.179  Sum_probs=68.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCS  118 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~  118 (433)
                      +.|+|+|++||||||+|+.|++.+++++++.|.+.+...       .....   .   +.....+...+. +...||++.
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~-------w~~~~---~---~~~~~~~~~~~~-~~~wVidG~   67 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN-------WEGVP---K---EEQITVQNELVK-EDEWIIDGN   67 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC-------CcCCC---H---HHHHHHHHHHhc-CCCEEEeCC
Confidence            479999999999999999999999999999999875321       11111   1   122233333333 346888875


Q ss_pred             cccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778        119 ALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus       119 ~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      ... .....+...  +.+|||++|.+++..|+.+|.
T Consensus        68 ~~~-~~~~~l~~~--d~vi~Ld~p~~~~~~R~~~R~  100 (167)
T PRK08118         68 YGG-TMDIRLNAA--DTIIFLDIPRTICLYRAFKRR  100 (167)
T ss_pred             cch-HHHHHHHhC--CEEEEEeCCHHHHHHHHHHHH
Confidence            321 122333333  589999999999999998884

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=99.17  E-value=8.3e-12  Score=111.35  Aligned_cols=144  Identities=22%  Similarity=0.225  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccc------ccccc--cC-----------------CCCCCcCCh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN------IDKMS--AK-----------------QPLNDEDRR   93 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~------~~~~~--~~-----------------~~~~~~~~~   93 (433)
                      ++|+|||..||||||+++.|++ +|++++|.|.+.....      ...+.  .|                 ..|+++   
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~---   76 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDP---   76 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSH---
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCH---
Confidence            5899999999999999999999 8999999998742110      00000  01                 112221   


Q ss_pred             hHHHHHHHHHHHh--------hh---CCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHh
Q psy16778         94 PWLNNINRIIHQL--------NV---DNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADL  162 (433)
Q Consensus        94 ~~~~~~~~~~~~~--------~~---~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~  162 (433)
                      .....++++++..        ..   ....+|++..-+.+..   +.... +.+|+++||.+++.+|+.+|.+  ...+.
T Consensus        77 ~~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~---~~~~~-D~vi~V~a~~e~ri~Rl~~R~~--~~~~~  150 (180)
T PF01121_consen   77 EKLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESG---LEKLC-DEVIVVYAPEEIRIKRLMERDG--LSEEE  150 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTT---GGGGS-SEEEEEE--HHHHHHHHHHHHT--STHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhh---Hhhhh-ceEEEEECCHHHHHHHHHhhCC--CcHHH
Confidence            2222333333322        11   1134555555444432   11222 5799999999999999999975  33344


Q ss_pred             HHHHHhhccCCCCCCCCCeEEEccCCCHHH
Q psy16778        163 LESQFQTLEEPDPLVEPDVRTVSVNEPLEG  192 (433)
Q Consensus       163 l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee  192 (433)
                      +...+..+.+.....+.++++|+++.+.+|
T Consensus       151 ~~~ri~~Q~~~~~k~~~ad~vI~N~g~~~~  180 (180)
T PF01121_consen  151 AEARIASQMPDEEKRKRADFVIDNNGSLEE  180 (180)
T ss_dssp             HHHHHHTS--HHHHHHH-SEEEE-SSHHH-
T ss_pred             HHHHHHhCCCHHHHHHhCCEEEECCCCCCC
Confidence            443333332221112338899999987764

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK07261 topology modulation protein; Provisional

Probab=99.17  E-value=3e-10  Score=100.88  Aligned_cols=100  Identities=24%  Similarity=0.283  Sum_probs=71.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCS  118 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~  118 (433)
                      +.|+|+|++||||||+++.|++.+|.++++.|.+.....         ++..........    +...+.++ ..||++.
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------~~~~~~~~~~~~----~~~~~~~~-~wIidg~   66 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------WQERDDDDMIAD----ISNFLLKH-DWIIDGN   66 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------cccCCHHHHHHH----HHHHHhCC-CEEEcCc
Confidence            479999999999999999999999999999998854321         111122222222    33334444 4888887


Q ss_pred             cccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778        119 ALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus       119 ~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      .........+...  ..+|||++|..+++.|+.+|.
T Consensus        67 ~~~~~~~~~l~~a--d~vI~Ld~p~~~~~~R~lkR~  100 (171)
T PRK07261         67 YSWCLYEERMQEA--DQIIFLNFSRFNCLYRAFKRY  100 (171)
T ss_pred             chhhhHHHHHHHC--CEEEEEcCCHHHHHHHHHHHH
Confidence            6543444555544  489999999999999998885

>PRK13975 thymidylate kinase; Provisional

Probab=99.16  E-value=3.1e-10  Score=103.08  Aligned_cols=165  Identities=13%  Similarity=0.198  Sum_probs=86.1

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC--eEEeCCCCCccccccccccCCCCCCcCChhHH--HHHH--HHHHHhhhCCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGV--KFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWL--NNIN--RIIHQLNVDNL  111 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~--~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~  111 (433)
                      ++.|+|.|++||||||+++.|+++++.  .+..+|...... ....-.+...........+  ...+  ..+...+.. .
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~-ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~-~   79 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKL-IREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK-R   79 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHH-HHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence            689999999999999999999999984  334433222110 0010001001110000011  1111  112222333 3


Q ss_pred             cEEEEcC-----------cccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCCCC-CHHh---HHHHHhhccCCC
Q psy16778        112 TGVLVCS-----------ALRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRAEHFM-PADL---LESQFQTLEEPD  174 (433)
Q Consensus       112 ~~Vi~~~-----------~~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~-~~~~---l~~~~~~~~~~~  174 (433)
                      .+|.+..           +....+...+.... . .++|||++|++++.+|+..|+.... ..+.   +...+..+....
T Consensus        80 ~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~~~~~~~  159 (196)
T PRK13975         80 DVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYLELANNE  159 (196)
T ss_pred             EEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHHHHHHHhhc
Confidence            4555521           12222222222211 1 6899999999999999998852111 1221   222222222110


Q ss_pred             -CCCCCCeEEEccC-CCHHHHHHHHhcCCCCC
Q psy16778        175 -PLVEPDVRTVSVN-EPLEGIVSKSAIMPPTR  204 (433)
Q Consensus       175 -~~~~~~~~~Id~~-~~~ee~~~~i~~~l~~~  204 (433)
                       ++.....++||++ .+++++.++|.+.+..+
T Consensus       160 ~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~  191 (196)
T PRK13975        160 KFMPKYGFIVIDTTNKSIEEVFNEILNKIKDK  191 (196)
T ss_pred             ccCCcCCEEEEECCCCCHHHHHHHHHHHHHHh
Confidence             0123367999997 89999999988776553

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.15  E-value=5.8e-11  Score=105.59  Aligned_cols=98  Identities=17%  Similarity=0.187  Sum_probs=79.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~   72 (433)
                      +++++||+++||.          ..++.+.++.+.++.+.+|+|||||||||+.|.|.++.         |-..+++.++
T Consensus         7 ~~~~~~l~~yYg~----------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni   76 (253)
T COG1117           7 AIEVRDLNLYYGD----------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI   76 (253)
T ss_pred             eeEecceeEEECc----------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeec
Confidence            6788999999997          56888888999999999999999999999999999865         5567777777


Q ss_pred             Cccc---cccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778         73 HPQS---NIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN  110 (433)
Q Consensus        73 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (433)
                      +.+.   ...+...|+.||.+..++ ....++++.....+|
T Consensus        77 ~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g  116 (253)
T COG1117          77 YDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG  116 (253)
T ss_pred             cCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc
Confidence            7541   112345699999998888 677788877766555

>PRK06547 hypothetical protein; Provisional

Probab=99.15  E-value=6.4e-10  Score=98.67  Aligned_cols=109  Identities=19%  Similarity=0.220  Sum_probs=71.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHH----------
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIH----------  104 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  104 (433)
                      ....++|+|+|++||||||+++.|++.+++.+++.|+++....  ++.    .       ....+.+.+.          
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~--~~~----~-------~~~~l~~~~l~~g~~~~~~y   78 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWH--GLA----A-------ASEHVAEAVLDEGRPGRWRW   78 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccc--cCC----h-------HHHHHHHHHHhCCCCceecC
Confidence            4556799999999999999999999999999999999874311  100    0       0011111110          


Q ss_pred             --------H--hhhCCCcEEEEcCc-ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCC
Q psy16778        105 --------Q--LNVDNLTGVLVCSA-LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH  156 (433)
Q Consensus       105 --------~--~~~~~~~~Vi~~~~-~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~  156 (433)
                              .  ....+..+|+.+.. .....++.+.+....+.|||++|.+++.+|..+|.+.
T Consensus        79 d~~~~~~~~~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~  141 (172)
T PRK06547         79 DWANNRPGDWVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD  141 (172)
T ss_pred             CCCCCCCCCcEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch
Confidence                    0  11123334454433 4455566665432257999999999999999999765

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.14  E-value=1.8e-11  Score=118.36  Aligned_cols=136  Identities=15%  Similarity=0.153  Sum_probs=96.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.||..          .++.+.++++..|+.++|+|||||||||+.|++|+..    |..++++.++..-..
T Consensus         3 ~i~l~~v~K~yg~~----------~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P   72 (338)
T COG3839           3 ELELKNVRKSFGSF----------EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP   72 (338)
T ss_pred             EEEEeeeEEEcCCc----------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh
Confidence            78999999999961          1677788999999999999999999999999999965    778888888764222


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      . ....++.||+....+.++..+++...+...+.+    -........+.++..  .+.-+|++-+..+...-+||-
T Consensus        73 ~-~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~----k~ei~~rV~eva~~L--~l~~lL~r~P~~LSGGQrQRV  142 (338)
T COG3839          73 E-KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVP----KAEIDKRVKEVAKLL--GLEHLLNRKPLQLSGGQRQRV  142 (338)
T ss_pred             h-HCCEEEEeCCccccCCCcHHHHhhhhhhhCCCc----hHHHHHHHHHHHHHc--CChhHHhcCcccCChhhHHHH
Confidence            2 235689999988888888888888877665421    000011222233222  244556666666666555553

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=99.13  E-value=3.1e-10  Score=121.41  Aligned_cols=165  Identities=19%  Similarity=0.155  Sum_probs=97.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhH---------------------
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPW---------------------   95 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~---------------------   95 (433)
                      +.++|+|.||+||||||+++.|++++|+.|+|++.+++...+..+..++.+.+......                     
T Consensus       441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (661)
T PRK11860        441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDV  520 (661)
T ss_pred             CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEc
Confidence            35689999999999999999999999999999999987765555555555443110000                     


Q ss_pred             ------------------HHHHHHHHHHh---hhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHH--
Q psy16778         96 ------------------LNNINRIIHQL---NVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQK--  152 (433)
Q Consensus        96 ------------------~~~~~~~~~~~---~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~--  152 (433)
                                        ...+.+.+...   .....++|+++--.--   -.+.+.  .+.|||+++++++.+|-.+  
T Consensus       521 ~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~~v~eGRdigt---vv~p~a--~~kifl~a~~~~Ra~Rr~~~~  595 (661)
T PRK11860        521 TDAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPGLVADGRDMGT---VIFPDA--ALKVFLTASAEARAERRYKQL  595 (661)
T ss_pred             hhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCCEEEECCCCcc---EECCCC--CeEEEEECChhHHHHHHHHHH
Confidence                              00011111110   1112234444211000   000011  4899999999999888643  


Q ss_pred             -hhCCCCCHHhHHHHHhhccC--------CCCCCCCCeEEEccC-CCHHHHHHHHhcCCCCCCCC
Q psy16778        153 -RAEHFMPADLLESQFQTLEE--------PDPLVEPDVRTVSVN-EPLEGIVSKSAIMPPTRAPP  207 (433)
Q Consensus       153 -R~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~~~~~~  207 (433)
                       +.+.....+.+...+..++.        +.. ...++++||++ .+++|+++.|.+.+.++.++
T Consensus       596 ~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~-~~~da~~idts~~~~~~v~~~i~~~i~~~~~~  659 (661)
T PRK11860        596 ISKGISANIADLLADLEARDARDTQRSVAPLK-PAQDALLLDNSDLTIEQAVAQVLDWWQERQPF  659 (661)
T ss_pred             HhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCc-cCCCEEEEECCCCCHHHHHHHHHHHHHhhCCC
Confidence             22222233333333333332        221 34589999999 99999999998887665443

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=99.12  E-value=2.4e-10  Score=103.66  Aligned_cols=154  Identities=17%  Similarity=0.154  Sum_probs=87.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------ccc--ccCC-CCCCcCC-------------hhHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------DKM--SAKQ-PLNDEDR-------------RPWLN   97 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~~~--~~~~-~~~~~~~-------------~~~~~   97 (433)
                      .|+|+|++||||||+++.|++ +|..+++.|.+......      ..+  ..|. .+...+.             .....
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~   79 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK   79 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence            379999999999999999986 69999999988422100      000  0111 1111110             01112


Q ss_pred             HHHHHHHHhh-----------hCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHH
Q psy16778         98 NINRIIHQLN-----------VDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQ  166 (433)
Q Consensus        98 ~~~~~~~~~~-----------~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~  166 (433)
                      .++.+++...           ..+..+|++..-+.+.....+.    +.++|+++|++++.+|+.+|.+.  ..+.+...
T Consensus        80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~~~~~~----D~vi~V~a~~e~r~~RL~~R~g~--s~e~a~~r  153 (196)
T PRK14732         80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETDAYTLC----DATVTVDSDPEESILRTISRDGM--KKEDVLAR  153 (196)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcCchhhC----CEEEEEECCHHHHHHHHHHcCCC--CHHHHHHH
Confidence            2222222211           1232344444433332222111    47999999999999999999642  23333333


Q ss_pred             HhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778        167 FQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIM  200 (433)
Q Consensus       167 ~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~  200 (433)
                      +..........+.++++|+++.+.+++..++.+.
T Consensus       154 i~~Q~~~~~k~~~aD~vI~N~~~~~~l~~~v~~l  187 (196)
T PRK14732        154 IASQLPITEKLKRADYIVRNDGNREGLKEECKIL  187 (196)
T ss_pred             HHHcCCHHHHHHhCCEEEECCCCHHHHHHHHHHH
Confidence            3222221112345889999999999999888754

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=99.11  E-value=2.9e-09  Score=90.44  Aligned_cols=156  Identities=15%  Similarity=0.182  Sum_probs=98.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-C---CeEEeCCCCCccccccccccCCCCCCcCChhHHH---------------
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL-G---VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN---------------   97 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l-g---~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------   97 (433)
                      +|..|+++|||||||-|+...+...+ +   +.|+  ..++.....   ..+..+..-...+|.+               
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fv--rRvITRpa~---ag~EdH~avs~~eF~~~a~~g~FAlsWqAhG   78 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFV--RRVITRPAD---AGGEDHDALSEAEFNTRAGQGAFALSWQAHG   78 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEE--EEEecccCC---CCcccccccCHHHHHHHhhcCceeEEehhcC
Confidence            68899999999999999999988887 2   2222  222211100   1123332222222222               


Q ss_pred             ---HHHHHHHHhhhCCCcEEEEcCc-ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCC
Q psy16778         98 ---NINRIIHQLNVDNLTGVLVCSA-LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEP  173 (433)
Q Consensus        98 ---~~~~~~~~~~~~~~~~Vi~~~~-~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~  173 (433)
                         .+-..+..++.+|..+|+.++- ..+..+.....   ..+|.|+++++++.+|+.+|+.  ..++.+...+.+-...
T Consensus        79 L~Ygip~eId~wl~~G~vvl~NgSRa~Lp~arrry~~---Llvv~ita~p~VLaqRL~~RGR--Es~eeI~aRL~R~a~~  153 (192)
T COG3709          79 LSYGIPAEIDLWLAAGDVVLVNGSRAVLPQARRRYPQ---LLVVCITASPEVLAQRLAERGR--ESREEILARLARAARY  153 (192)
T ss_pred             ccccCchhHHHHHhCCCEEEEeccHhhhHHHHHhhhc---ceeEEEecCHHHHHHHHHHhcc--CCHHHHHHHHHhhccc
Confidence               1233456677788655554442 33444444443   4899999999999999999974  3345555555544443


Q ss_pred             CCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        174 DPLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       174 ~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                      .. ...+..+||+++..+...+.....+.+
T Consensus       154 ~~-~~~dv~~idNsG~l~~ag~~ll~~l~~  182 (192)
T COG3709         154 TA-GPGDVTTIDNSGELEDAGERLLALLHQ  182 (192)
T ss_pred             cc-CCCCeEEEcCCCcHHHHHHHHHHHHHh
Confidence            32 456889999999999998888777664

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.10  E-value=1.5e-10  Score=103.79  Aligned_cols=145  Identities=18%  Similarity=0.175  Sum_probs=78.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccc------cc--ccCCCC-CCcCCh-------------hHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNID------KM--SAKQPL-NDEDRR-------------PWLN   97 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~------~~--~~~~~~-~~~~~~-------------~~~~   97 (433)
                      +|+|+|++||||||+++.|++ +|++++++|.+.++....      .+  ..|..+ ......             ....
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~   79 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK   79 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence            489999999999999999999 899999999885431110      00  011111 000000             0111


Q ss_pred             HHHHHHH--------Hhhh-C-CCcEEEEcCc-ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHH
Q psy16778         98 NINRIIH--------QLNV-D-NLTGVLVCSA-LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQ  166 (433)
Q Consensus        98 ~~~~~~~--------~~~~-~-~~~~Vi~~~~-~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~  166 (433)
                      .+++++.        .... . ...+++...+ +.+..   +.... +.+|++++|.+++.+|+.+|.+.  ..+.+...
T Consensus        80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~plL~e~~---~~~~~-D~vv~V~a~~~~ri~Rl~~Rd~~--s~~~~~~r  153 (179)
T cd02022          80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDIPLLFETG---LEKLV-DRVIVVDAPPEIQIERLMKRDGL--SEEEAEAR  153 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCEEEEEehHhhcCC---cHHhC-CeEEEEECCHHHHHHHHHHcCCC--CHHHHHHH
Confidence            2222222        1111 1 1234443333 22221   11111 47999999999999999999642  23333333


Q ss_pred             HhhccCCCCCCCCCeEEEccCCCHH
Q psy16778        167 FQTLEEPDPLVEPDVRTVSVNEPLE  191 (433)
Q Consensus       167 ~~~~~~~~~~~~~~~~~Id~~~~~e  191 (433)
                      +..........+.++++|+++.+.+
T Consensus       154 ~~~Q~~~~~~~~~aD~vI~N~~~~~  178 (179)
T cd02022         154 IASQMPLEEKRARADFVIDNSGSLE  178 (179)
T ss_pred             HHhcCCHHHHHHhCCEEEECcCCCC
Confidence            3332222111344889999886543

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.10  E-value=1.1e-09  Score=99.26  Aligned_cols=118  Identities=21%  Similarity=0.236  Sum_probs=76.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccC-C----------CCCCcCC-----------hh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAK-Q----------PLNDEDR-----------RP   94 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~-~----------~~~~~~~-----------~~   94 (433)
                      .+++|+|+|.|||||||+++.|++++|+.++...++.++........+ .          .+.++..           ..
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~   81 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA   81 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence            567999999999999999999999999976555444322111001111 0          0111111           11


Q ss_pred             HHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEc-CHHHHHHHHHHhhC
Q psy16778         95 WLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKA-EFGVILSRLQKRAE  155 (433)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~-~~e~l~~Rl~~R~~  155 (433)
                      .+..+..++...+.+|.++|+++....+.+++...... ..++++.+ +++++.+|+..|..
T Consensus        82 v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~~~-v~~i~l~v~d~e~lr~Rl~~R~~  142 (197)
T PRK12339         82 IMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRTNN-IRAFYLYIRDAELHRSRLADRIN  142 (197)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHhcC-eEEEEEEeCCHHHHHHHHHHHhh
Confidence            12235566777788999999999887777776544333 35566654 68888899999973

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.10  E-value=1.6e-09  Score=111.33  Aligned_cols=122  Identities=13%  Similarity=0.133  Sum_probs=92.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCc
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLT  112 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (433)
                      +...++.+|+++|+|||||||+++.+++..|+.+++.|.+-                     ........+...+.+|.+
T Consensus       364 ~~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg---------------------~~~~~~~~a~~~L~~G~s  422 (526)
T TIGR01663       364 LDDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG---------------------STQNCLTACERALDQGKR  422 (526)
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH---------------------HHHHHHHHHHHHHhCCCc
Confidence            34567889999999999999999999999999999999761                     022234456777889999


Q ss_pred             EEEEcCcccHHHHHHHHh----cCC-eEEEEEEcCHHHHHHHHHHhhCC-----CCCHHhHHHHHhhccCCCC
Q psy16778        113 GVLVCSALRRNYRDIIRN----NNR-VVFIYLKAEFGVILSRLQKRAEH-----FMPADLLESQFQTLEEPDP  175 (433)
Q Consensus       113 ~Vi~~~~~~~~~~~~l~~----~~~-~~vv~L~~~~e~l~~Rl~~R~~~-----~~~~~~l~~~~~~~~~~~~  175 (433)
                      +|||.+...+..|..+.+    .+- ...+|+++|.+++.+|+..|...     ..+...+..+...++++..
T Consensus       423 VVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s~~~vp~~v~~~~~k~fE~Pt~  495 (526)
T TIGR01663       423 CAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMVFNGMKKKFEAPAL  495 (526)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcccCCCCHHHHHHHHhhCCCCCc
Confidence            999999877666554444    322 77899999999999999998632     1224556777777777653

Note that the EC number for the kinase function is: 2.7.1.78

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.10  E-value=8.4e-11  Score=114.30  Aligned_cols=137  Identities=15%  Similarity=0.132  Sum_probs=100.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.||.          ..++.++++++.+|+++.|.|||||||||+.|+||+..    |...+++.++..-. 
T Consensus         5 ~l~i~~v~k~yg~----------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lp-   73 (352)
T COG3842           5 ALEIRNVSKSFGD----------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-   73 (352)
T ss_pred             eEEEEeeeeecCC----------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC-
Confidence            6889999999996          66888899999999999999999999999999999955    77888888775422 


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      ......|++||+...++.++..+|+...+...+..-   .....+...+.+.-..  +-=|.+..+..+....+||.
T Consensus        74 p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~---~~~i~~rv~e~L~lV~--L~~~~~R~p~qLSGGQqQRV  145 (352)
T COG3842          74 PEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLK---KAEIKARVEEALELVG--LEGFADRKPHQLSGGQQQRV  145 (352)
T ss_pred             hhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCC---HHHHHHHHHHHHHHcC--chhhhhhChhhhChHHHHHH
Confidence            133456999999999999999999988876322110   0000112233333332  33466777888888888875

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.09  E-value=1.7e-09  Score=97.27  Aligned_cols=157  Identities=15%  Similarity=0.126  Sum_probs=90.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC-ccccccccccCCCCCCcCChhHHH-----------------
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH-PQSNIDKMSAKQPLNDEDRRPWLN-----------------   97 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------------   97 (433)
                      .++.+|+|+||||||||||++.|.+.+.-.+....... .+....  ..|..+..-....+..                 
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE--~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~   79 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGD--EEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNY   79 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCC--CCCceeEeCCHHHHHHHHHcCCeEEEEEECCee
Confidence            35789999999999999999999987632232222221 111100  1122221111111111                 


Q ss_pred             --HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcC-HHHHHHHHHHhhCCCCC--HHhHHHHHhhc
Q psy16778         98 --NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAE-FGVILSRLQKRAEHFMP--ADLLESQFQTL  170 (433)
Q Consensus        98 --~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~-~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~  170 (433)
                        .-.+.+...+.+|+.+|++...   .-...+++..+  .++||+..| .+++.+|+.+|+.....  ..+++.+....
T Consensus        80 YGt~~~~i~~~~~~g~~~i~d~~~---~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~  156 (186)
T PRK14737         80 YGTPKAFIEDAFKEGRSAIMDIDV---QGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIEL  156 (186)
T ss_pred             ecCcHHHHHHHHHcCCeEEEEcCH---HHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence              1123355667788888888753   22233444332  368999885 79999999998643221  22334433333


Q ss_pred             cCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        171 EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       171 ~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      +.    ...++++|+++ +.+++..++...+.
T Consensus       157 ~~----~~~~D~vI~N~-dle~a~~ql~~ii~  183 (186)
T PRK14737        157 DE----ANEFDYKIIND-DLEDAIADLEAIIC  183 (186)
T ss_pred             hh----hccCCEEEECc-CHHHHHHHHHHHHh
Confidence            32    23378888888 88998888876553

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.09  E-value=2.2e-09  Score=98.60  Aligned_cols=160  Identities=16%  Similarity=0.160  Sum_probs=88.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccc--cccCCCCCCcCChhHHHHHHHHHHHhhh--
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDK--MSAKQPLNDEDRRPWLNNINRIIHQLNV--  108 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  108 (433)
                      .++.+|+|+|++||||||+++.|++.+   .+.+++.|.++.......  ......+..+.... +..+.+.+..+..  
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~l~~~~   82 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFD-HDLLIEHLKALKAGK   82 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCccccc-HHHHHHHHHHHHcCC
Confidence            577899999999999999999999998   356789988764321000  01112222221111 1223333322211  


Q ss_pred             ---------------------CCCcEEE-EcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCC--CCCHHhHH
Q psy16778        109 ---------------------DNLTGVL-VCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH--FMPADLLE  164 (433)
Q Consensus       109 ---------------------~~~~~Vi-~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~--~~~~~~l~  164 (433)
                                           ....+|| ++.....  ...+.... ..+|||+++.++++.|..+|...  -...+...
T Consensus        83 ~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~--~~~~~~~~-d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~  159 (209)
T PRK05480         83 AIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLE--DERLRDLM-DIKIFVDTPLDIRLIRRLKRDVNERGRSLESVI  159 (209)
T ss_pred             ccccCcccccccccCCCeEEeCCCCEEEEEeehhcC--chhHhhhh-ceeEEEeCChhHHHHHHHhhcchhcCCCHHHHH
Confidence                                 1112333 3332211  01122222 47999999999999998888521  12233222


Q ss_pred             HHHhhc--------cCCCCCCCCCeEEEccCC----CHHHHHHHHhcCC
Q psy16778        165 SQFQTL--------EEPDPLVEPDVRTVSVNE----PLEGIVSKSAIMP  201 (433)
Q Consensus       165 ~~~~~~--------~~~~~~~~~~~~~Id~~~----~~ee~~~~i~~~l  201 (433)
                      ..+...        ..+.  +..++++|+++.    +.+++..+|...+
T Consensus       160 ~~~~~~~~~~~~~~i~~~--~~~AD~vI~~~~~~~~~~~~l~~~i~~~~  206 (209)
T PRK05480        160 NQYLSTVRPMHLQFIEPS--KRYADIIIPEGGKNRVAIDILKAKIRQLL  206 (209)
T ss_pred             HHHHHhhhhhHHhhccHh--hcceeEEecCCCcchHHHHHHHHHHHHHh
Confidence            332222        1222  556999998664    7777777776654

>PRK00023 cmk cytidylate kinase; Provisional

Probab=99.09  E-value=1.5e-09  Score=100.70  Aligned_cols=39  Identities=33%  Similarity=0.570  Sum_probs=35.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcc
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQ   75 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~   75 (433)
                      ++++|+|.|++||||||+++.|++++|+.+++.+.+++.
T Consensus         3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~   41 (225)
T PRK00023          3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA   41 (225)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence            358999999999999999999999999999999997543

>PRK04040 adenylate kinase; Provisional

Probab=99.08  E-value=1.4e-09  Score=97.98  Aligned_cols=160  Identities=17%  Similarity=0.157  Sum_probs=86.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeCCCCCccccccccccCCCCCC--------cCChhHHHHHHHHHHHhh
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL--GVKFIDGDHLHPQSNIDKMSAKQPLND--------EDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  107 (433)
                      +++|+|+|+|||||||+++.|++++  ++.+++.+++.....   ...|+....        .....+.+.....+... 
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a---~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~-   77 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVA---KEEGLVEHRDEMRKLPPEEQKELQREAAERIAEM-   77 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHH---HHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHh-
Confidence            5789999999999999999999999  899999998753211   111221110        01111111111222222 


Q ss_pred             hCCCcEEEEcCc--------ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHH---hhCCCCCHHhHHHHHhh--cc-CC
Q psy16778        108 VDNLTGVLVCSA--------LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQK---RAEHFMPADLLESQFQT--LE-EP  173 (433)
Q Consensus       108 ~~~~~~Vi~~~~--------~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~---R~~~~~~~~~l~~~~~~--~~-~~  173 (433)
                      ..+..+|+++..        ....-.+.+++..+..+|++.++++++.+|..+   |.......+.+......  .+ ..
T Consensus        78 ~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~  157 (188)
T PRK04040         78 AGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMA  157 (188)
T ss_pred             hcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            233457887632        111123344444336799999999999888774   33222332322221111  00 10


Q ss_pred             C-CCCCCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778        174 D-PLVEPDVRTVSVN-EPLEGIVSKSAIMP  201 (433)
Q Consensus       174 ~-~~~~~~~~~Id~~-~~~ee~~~~i~~~l  201 (433)
                      + .+....+++|.++ ..+++..+++.+.+
T Consensus       158 ~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii  187 (188)
T PRK04040        158 YAVLTGATVKIVENREGLLEEAAEEIVEVL  187 (188)
T ss_pred             HHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence            1 0112234455554 66999998887653

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.07  E-value=8.9e-11  Score=106.05  Aligned_cols=99  Identities=17%  Similarity=0.140  Sum_probs=79.3

Q ss_pred             Cccccccceeee-ccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc
Q psy16778          1 MAVSNFGNWRYW-GMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ   75 (433)
Q Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~   75 (433)
                      |++++++|++.| +.          .+.+.++++++++|+.|+|+|+|||||||+.|.|....    |..++++.+....
T Consensus         2 ~~i~~~nl~k~yp~~----------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~   71 (258)
T COG3638           2 MMIEVKNLSKTYPGG----------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKL   71 (258)
T ss_pred             ceEEEeeeeeecCCC----------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhcc
Confidence            589999999999 65          33666777889999999999999999999999999944    7777877666432


Q ss_pred             cc----ccccccCCCCCCcCChhHHHHHHHHHHHhhhC
Q psy16778         76 SN----IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVD  109 (433)
Q Consensus        76 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (433)
                      ..    ......|++||.....+....+++++...+..
T Consensus        72 ~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~  109 (258)
T COG3638          72 KGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGY  109 (258)
T ss_pred             chHHHHHHHHhceeEeccCCcccccHHHHHHHhhhccc
Confidence            11    11345699999999999999999999887644

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.07  E-value=1.8e-09  Score=98.72  Aligned_cols=164  Identities=16%  Similarity=0.119  Sum_probs=87.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCcccc---ccccccCCCCCCcCChh-H-------HHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSN---IDKMSAKQPLNDEDRRP-W-------LNNINRI  102 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~---~~~~~~~~~~~~~~~~~-~-------~~~~~~~  102 (433)
                      +|+.|+|.|++||||||+++.|++.+   |..++-.........   ....-.+. ..+..... .       +....+.
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~   80 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDP-NEEMDDKTELLLFYAARAQHLEEV   80 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhcc-ccCCCHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999987   333332222111000   00000000 01111111 0       1122333


Q ss_pred             HHHhhhCCCcEEEEcCc------------ccHHHHHHHHh----cC-CeEEEEEEcCHHHHHHHHHHhhCCCC----CHH
Q psy16778        103 IHQLNVDNLTGVLVCSA------------LRRNYRDIIRN----NN-RVVFIYLKAEFGVILSRLQKRAEHFM----PAD  161 (433)
Q Consensus       103 ~~~~~~~~~~~Vi~~~~------------~~~~~~~~l~~----~~-~~~vv~L~~~~e~l~~Rl~~R~~~~~----~~~  161 (433)
                      +...+.+|..+|+|-..            ....+...+..    .. +..+|||++|++++.+|+.+|+....    ..+
T Consensus        81 i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~  160 (205)
T PRK00698         81 IKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQEGLD  160 (205)
T ss_pred             HHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHH
Confidence            44445567666776221            11222222222    11 27899999999999999999963211    112


Q ss_pred             hHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        162 LLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       162 ~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      .+......+...........++||++.+++++..+|.+.+
T Consensus       161 ~~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i  200 (205)
T PRK00698        161 FFERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVI  200 (205)
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence            2222222222221112235688988899999999887654

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.07  E-value=4.6e-10  Score=96.77  Aligned_cols=103  Identities=22%  Similarity=0.299  Sum_probs=63.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCc
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSA  119 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~  119 (433)
                      +|+|+|++||||||+++.|++.+|+++++.|.+..... .... ...   .........+........ .+..+|+++..
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~-~~~~-~~~---~~~~~i~~~l~~~~~~~~-~~~~~Vidg~~   74 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV-GKLA-SEV---AAIPEVRKALDERQRELA-KKPGIVLEGRD   74 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH-HHHH-HHh---cccHhHHHHHHHHHHHHh-hCCCEEEEeee
Confidence            58999999999999999999999999999996542210 0000 000   001112222333333333 33467776543


Q ss_pred             ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778        120 LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR  153 (433)
Q Consensus       120 ~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R  153 (433)
                      ....   .+...  .++|||++|++.+.+|+.+|
T Consensus        75 ~~~~---~~~~~--~~~i~l~~~~~~r~~R~~~r  103 (147)
T cd02020          75 IGTV---VFPDA--DLKIFLTASPEVRAKRRAKQ  103 (147)
T ss_pred             eeeE---EcCCC--CEEEEEECCHHHHHHHHHHH
Confidence            1110   01111  58999999999999999884

>KOG3220|consensus

Probab=99.06  E-value=7.5e-10  Score=97.36  Aligned_cols=157  Identities=19%  Similarity=0.250  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccc------cccc----------cc---------cCCCCCCcCCh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS------NIDK----------MS---------AKQPLNDEDRR   93 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~------~~~~----------~~---------~~~~~~~~~~~   93 (433)
                      .+|+|||..||||||+++.+- .+|+++||.|.+.+.-      .+..          ..         ....|+++...
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r   80 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR   80 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence            479999999999999999998 5899999999774220      0000          00         01234433222


Q ss_pred             hHHH---------HHHHHHHHhhhCCCcEE-EEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhH
Q psy16778         94 PWLN---------NINRIIHQLNVDNLTGV-LVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLL  163 (433)
Q Consensus        94 ~~~~---------~~~~~~~~~~~~~~~~V-i~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l  163 (433)
                      ..+.         .....+......|..+| +|..-+++.-  +++-.  ..+|-+.|+.++..+|+.+|.+  ..++..
T Consensus        81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~~--~~~~~--~~tvvV~cd~~~Ql~Rl~~Rd~--lse~dA  154 (225)
T KOG3220|consen   81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEAK--LLKIC--HKTVVVTCDEELQLERLVERDE--LSEEDA  154 (225)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHHh--HHhhe--eeEEEEEECcHHHHHHHHHhcc--ccHHHH
Confidence            2221         11222333444565554 4555455542  12111  3588899999999999999973  334444


Q ss_pred             HHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        164 ESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      +.....+-+.....+.++++|++..+++++.+++.+.+.
T Consensus       155 e~Rl~sQmp~~~k~~~a~~Vi~Nng~~~~l~~qv~~v~~  193 (225)
T KOG3220|consen  155 ENRLQSQMPLEKKCELADVVIDNNGSLEDLYEQVEKVLA  193 (225)
T ss_pred             HHHHHhcCCHHHHHHhhheeecCCCChHHHHHHHHHHHH
Confidence            444444444332233488999999999999988876654

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.04  E-value=3.6e-10  Score=98.27  Aligned_cols=109  Identities=18%  Similarity=0.219  Sum_probs=68.6

Q ss_pred             EEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCC----hhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         43 IMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDR----RPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        43 l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      |+|+|||||||+++.|++++|+.+|+.+++.+.........|..++.   .+.    .-....+...+... ....++|+
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~-~~~~g~il   79 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP-PCNRGFIL   79 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG-GTTTEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh-cccceeee
Confidence            68999999999999999999999999998875422111000100000   000    11112222333322 34578999


Q ss_pred             EcCcccHHHHHHHHh----cCC--eEEEEEEcCHHHHHHHHHH
Q psy16778        116 VCSALRRNYRDIIRN----NNR--VVFIYLKAEFGVILSRLQK  152 (433)
Q Consensus       116 ~~~~~~~~~~~~l~~----~~~--~~vv~L~~~~e~l~~Rl~~  152 (433)
                      ++.+.+....+.+.+    ...  ..+|+|+++.+++.+|+.+
T Consensus        80 dGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   80 DGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             ESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             eeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence            998877776666665    333  6899999999999999987

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.04  E-value=4.2e-09  Score=95.53  Aligned_cols=160  Identities=18%  Similarity=0.179  Sum_probs=82.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccc---ccccc-ccCCCCCCcC--ChhHH-----HHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQS---NIDKM-SAKQPLNDED--RRPWL-----NNINRI  102 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~---~~~~~-~~~~~~~~~~--~~~~~-----~~~~~~  102 (433)
                      +|++|+|.|++||||||+++.|++.+   |..++-...-....   ..... ..+.......  ..-.+     ..+.+.
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~   81 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDK   81 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999999998   33332111000000   00000 0010100000  00001     122334


Q ss_pred             HHHhhhCCCcEEEEcCc------------ccHHHHHHH----HhcCCeEEEEEEcCHHHHHHHHHHhhCCCC----CHHh
Q psy16778        103 IHQLNVDNLTGVLVCSA------------LRRNYRDII----RNNNRVVFIYLKAEFGVILSRLQKRAEHFM----PADL  162 (433)
Q Consensus       103 ~~~~~~~~~~~Vi~~~~------------~~~~~~~~l----~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~----~~~~  162 (433)
                      +...+.++..+|++...            ....+...+    .......+|||++|++++++|+..|.....    ..+.
T Consensus        82 i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~~~~~~~~  161 (195)
T TIGR00041        82 IKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDREEFEKLDF  161 (195)
T ss_pred             HHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchHHHHHHHH
Confidence            45555566555566211            111222222    111026899999999999999998864211    1122


Q ss_pred             HHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHH
Q psy16778        163 LESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKS  197 (433)
Q Consensus       163 l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i  197 (433)
                      +....+.+.+... +....++||++.+++++..+|
T Consensus       162 ~~~~~~~y~~~~~-~~~~~~~id~~~~~e~v~~~i  195 (195)
T TIGR00041       162 FEKVRQRYLELAD-KEKSIHVIDATNSVEEVEQDI  195 (195)
T ss_pred             HHHHHHHHHHHHc-CCCcEEEEeCCCCHHHHHhhC
Confidence            2222333333332 133678899999999987764

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.03  E-value=2.8e-10  Score=94.90  Aligned_cols=108  Identities=29%  Similarity=0.261  Sum_probs=60.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhh--CCCcEEEEc
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNV--DNLTGVLVC  117 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Vi~~  117 (433)
                      +|+|+|+|||||||+++.|++++|+.+++.|++.....+.....+  .. .........+.+.+.....  ....+|+++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g   77 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDD--ER-EYIDADIDLLDDILEQLQNKPDNDNWIIDG   77 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTT--CC-HHHHHHHHHHHHHHHHHHETTT--EEEEEC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcc--hh-hHHHHHHHHHHHHHHhhhccCCCCeEEEeC
Confidence            589999999999999999999999999999995332222211111  10 0011122333444444432  344577777


Q ss_pred             CcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778        118 SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR  153 (433)
Q Consensus       118 ~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R  153 (433)
                      ... ......+...  ..++|+.++.+++.+|..+|
T Consensus        78 ~~~-~~~~~~~~~~--~~~i~l~~~~~~~~~~~~~R  110 (121)
T PF13207_consen   78 SYE-SEMEIRLPEF--DHVIYLDAPDEECRERRLKR  110 (121)
T ss_dssp             CSC-HCCHSCCHHG--GCEEEEEEEEHHHHHHHHHH
T ss_pred             CCc-cchhhhhhcC--CEEEEEECCCHHHHHHHHHH
Confidence            433 1110011111  36899998887444444444

...

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.03  E-value=3.7e-09  Score=95.85  Aligned_cols=163  Identities=16%  Similarity=0.162  Sum_probs=86.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccc---cccccccCCCCCC--cCChhH------HHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQS---NIDKMSAKQPLND--EDRRPW------LNNINRIIH  104 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~---~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~  104 (433)
                      ++|+|.|++||||||+++.|++.+   |..++.........   .....-.......  ......      .....+.+.
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   80 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK   80 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999998   76665554332110   0111000000000  000100      011222333


Q ss_pred             HhhhCCCcEEEEcCc------------ccHHHHHHHHh----cCC-eEEEEEEcCHHHHHHHHHHhhCCCCC----HHhH
Q psy16778        105 QLNVDNLTGVLVCSA------------LRRNYRDIIRN----NNR-VVFIYLKAEFGVILSRLQKRAEHFMP----ADLL  163 (433)
Q Consensus       105 ~~~~~~~~~Vi~~~~------------~~~~~~~~l~~----~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~----~~~l  163 (433)
                      .....+..+|++-..            ....+...+..    ... ..+|||+++++++.+|+.+|++....    .+.+
T Consensus        81 ~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~  160 (200)
T cd01672          81 PALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEFH  160 (200)
T ss_pred             HHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHHHH
Confidence            444566656666211            01222222221    111 68999999999999999998753221    1222


Q ss_pred             HHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        164 ESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ......+...........++||++.+++++.++|.+.+
T Consensus       161 ~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i  198 (200)
T cd01672         161 ERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAI  198 (200)
T ss_pred             HHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence            22222222211000124588888899999999887654

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.02  E-value=1.9e-10  Score=100.46  Aligned_cols=100  Identities=15%  Similarity=0.037  Sum_probs=77.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc--
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ--   75 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~--   75 (433)
                      |+++++|++.|+.-         -.++.++++++.+|+.++|+|+|||||||+.|+|....    |...++.-++..-  
T Consensus         1 mI~f~~V~k~Y~~g---------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~   71 (223)
T COG2884           1 MIRFENVSKAYPGG---------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKG   71 (223)
T ss_pred             CeeehhhhhhcCCC---------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccc
Confidence            57899999999862         23777888999999999999999999999999999877    6666666665421  


Q ss_pred             --ccccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778         76 --SNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN  110 (433)
Q Consensus        76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (433)
                        -..-....|++||+.......+..++++..+...|
T Consensus        72 ~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G  108 (223)
T COG2884          72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG  108 (223)
T ss_pred             cccchhhheeeeEeeeccccccchHhhhhhhhhhccC
Confidence              11123356899999877777888888888776555

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=99.02  E-value=3.7e-10  Score=113.27  Aligned_cols=154  Identities=18%  Similarity=0.160  Sum_probs=88.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------cccc--cCC-----------------CCCCcCCh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------DKMS--AKQ-----------------PLNDEDRR   93 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~~~~--~~~-----------------~~~~~~~~   93 (433)
                      .+|+|||++||||||+++.|++ +|++++|+|.+..+...      ..+.  .|.                 .|.++...
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~   80 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR   80 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence            4799999999999999999998 89999999988533100      0000  111                 22222111


Q ss_pred             hHHHHHHHHHHH--------hhh--CCCcEEEEcCc-ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHh
Q psy16778         94 PWLNNINRIIHQ--------LNV--DNLTGVLVCSA-LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADL  162 (433)
Q Consensus        94 ~~~~~~~~~~~~--------~~~--~~~~~Vi~~~~-~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~  162 (433)
                         ..++.++..        ...  .+..+|+.... +.+...   .... +.+|||++|.+++.+|+.+|.+  ...+.
T Consensus        81 ---~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~~~---~~~~-D~iI~V~ap~e~ri~Rl~~rRg--~s~~~  151 (395)
T PRK03333         81 ---AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVESGM---APLF-HLVVVVDADVEVRVRRLVEQRG--MAEAD  151 (395)
T ss_pred             ---HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecCCc---hhhC-CEEEEEECCHHHHHHHHHhcCC--CCHHH
Confidence               122222222        111  23345554333 222211   1111 4799999999999999988644  22222


Q ss_pred             HHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        163 LESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       163 l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      ....+..+.......+.++++|+++.+++++..++...+.
T Consensus       152 a~~ri~~Q~~~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~  191 (395)
T PRK03333        152 ARARIAAQASDEQRRAVADVWLDNSGTPDELVEAVRALWA  191 (395)
T ss_pred             HHHHHHhcCChHHHHHhCCEEEECCCCHHHHHHHHHHHHH
Confidence            2222222211111133478999998999999888876543

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.01  E-value=1.1e-08  Score=93.67  Aligned_cols=163  Identities=18%  Similarity=0.202  Sum_probs=86.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCCccccccccccCCCCCCcCCh-----------------hHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRR-----------------PWL   96 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~   96 (433)
                      ..++..|+|+|+|||||||+++.|.+.. .+.+......+.......-...+.|-....+                 ..+
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y   89 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY   89 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence            3477899999999999999999998642 2222222221111000000001111111000                 000


Q ss_pred             HHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEE-cCHHHHHHHHHHhhCCCCCHHhHHHHHhhcc-CC
Q psy16778         97 NNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLK-AEFGVILSRLQKRAEHFMPADLLESQFQTLE-EP  173 (433)
Q Consensus        97 ~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~-~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~-~~  173 (433)
                      -.-...+.....+|..+|+++..   .....+++..+ ..++|+. .+.+++.+|+.+|+..  ..+.+..++.... +.
T Consensus        90 Gt~~~~i~~~~~~g~~vi~~~~~---~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~--~~~~~~~Rl~~~~~e~  164 (206)
T PRK14738         90 GVPKAPVRQALASGRDVIVKVDV---QGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTE--SPEELERRLATAPLEL  164 (206)
T ss_pred             cCCHHHHHHHHHcCCcEEEEcCH---HHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence            01113455667788888888764   34455555544 3344443 5677999999998643  3334433333221 11


Q ss_pred             CCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        174 DPLVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       174 ~~~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      ........++||++.+++++.+++.+.+.
T Consensus       165 ~~~~~~~~~iId~~~~~e~v~~~i~~~l~  193 (206)
T PRK14738        165 EQLPEFDYVVVNPEDRLDEAVAQIMAIIS  193 (206)
T ss_pred             hcccCCCEEEECCCCCHHHHHHHHHHHHH
Confidence            11012255677777899999888877663

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.01  E-value=1.8e-10  Score=104.98  Aligned_cols=139  Identities=14%  Similarity=0.105  Sum_probs=94.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      |+++++|+|+|+.          -++++++++++..|+.++|+|+|||||||+.|++.+..    |..++++.++.....
T Consensus         1 MI~~~nvsk~y~~----------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~   70 (309)
T COG1125           1 MIEFENVSKRYGN----------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDP   70 (309)
T ss_pred             CceeeeeehhcCC----------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCH
Confidence            5789999999986          56888899999999999999999999999999999865    888999988864322


Q ss_pred             c-cccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         78 I-DKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        78 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      . -+...||.+|.-..++.++..+++..=-...+-+    -........+.+...+=..--|.+.-|.++....+||.
T Consensus        71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~----k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRV  144 (309)
T COG1125          71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWD----KERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRV  144 (309)
T ss_pred             HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCC----HHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHH
Confidence            2 2345689999988888888887764321111100    00001122333333220112356666777777777775

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=99.00  E-value=7.9e-09  Score=97.07  Aligned_cols=139  Identities=22%  Similarity=0.293  Sum_probs=86.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhh--CCCcEEEE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNV--DNLTGVLV  116 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Vi~  116 (433)
                      .+|+|+|+|||||||.++.|.+ +|+.++|  ++.                   ...+..+-+.+.....  .+--++||
T Consensus         2 ~~vIiTGlSGaGKs~Al~~lED-~Gy~cvD--NlP-------------------~~Ll~~l~~~~~~~~~~~~~~Ai~iD   59 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRALED-LGYYCVD--NLP-------------------PSLLPQLIELLAQSNSKIEKVAIVID   59 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHHHh-cCeeEEc--CCc-------------------HHHHHHHHHHHHhcCCCCceEEEEEe
Confidence            5799999999999999999988 6888875  331                   0112222222221111  11224444


Q ss_pred             cCc--ccHHH---HHHHHhcCC-eEEEEEEcCHHHHHHHHHH-hhCCCCC-----HHhHHHHHhhccCCCCCCCCCeEEE
Q psy16778        117 CSA--LRRNY---RDIIRNNNR-VVFIYLKAEFGVILSRLQK-RAEHFMP-----ADLLESQFQTLEEPDPLVEPDVRTV  184 (433)
Q Consensus       117 ~~~--~~~~~---~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~-R~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~I  184 (433)
                      .-.  .....   ...+++..- ..++||+|+.++|.+|-.. |+.+|..     .+.++...+.+.+.   ++.++++|
T Consensus        60 ~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~l---r~~Ad~vI  136 (284)
T PF03668_consen   60 IRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPL---RERADLVI  136 (284)
T ss_pred             CCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHH---HHhCCEEE
Confidence            322  11222   223333322 7899999999999999855 5556654     23344444444444   45689999


Q ss_pred             ccC-CCHHHHHHHHhcCCC
Q psy16778        185 SVN-EPLEGIVSKSAIMPP  202 (433)
Q Consensus       185 d~~-~~~ee~~~~i~~~l~  202 (433)
                      ||+ .++.++.+.+.+.+.
T Consensus       137 DTs~l~~~~Lr~~i~~~~~  155 (284)
T PF03668_consen  137 DTSNLSVHQLRERIRERFG  155 (284)
T ss_pred             ECCCCCHHHHHHHHHHHhc
Confidence            999 999999999987754

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PRK13973 thymidylate kinase; Provisional

Probab=99.00  E-value=7.1e-09  Score=95.50  Aligned_cols=166  Identities=12%  Similarity=0.037  Sum_probs=92.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccccc---cC---CCCCCcCChhH-----HHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDKMS---AK---QPLNDEDRRPW-----LNNINRI  102 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~~~---~~---~~~~~~~~~~~-----~~~~~~~  102 (433)
                      +|+.|+|.|..||||||+++.|++.+   |..++.+..--.......+.   .+   ..+......-.     ...+...
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~   81 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEV   81 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999   88887664332111111100   00   00111000000     1123445


Q ss_pred             HHHhhhCCCcEEEEcCc------------ccHHHHHHHHhc----CC-eEEEEEEcCHHHHHHHHHHhhCCC-----C--
Q psy16778        103 IHQLNVDNLTGVLVCSA------------LRRNYRDIIRNN----NR-VVFIYLKAEFGVILSRLQKRAEHF-----M--  158 (433)
Q Consensus       103 ~~~~~~~~~~~Vi~~~~------------~~~~~~~~l~~~----~~-~~vv~L~~~~e~l~~Rl~~R~~~~-----~--  158 (433)
                      +...+..|..+|.|-..            ....+...+...    .. .+++||++|++++.+|+.+|....     .  
T Consensus        82 i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~~  161 (213)
T PRK13973         82 IRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEKE  161 (213)
T ss_pred             HHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhhc
Confidence            66666677544444211            122344444321    12 799999999999999999885321     1  


Q ss_pred             CHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        159 PADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       159 ~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      ..+.+....+.+............+||++.+++++..+|.+.+.
T Consensus       162 ~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~~e~V~~~I~~~i~  205 (213)
T PRK13973        162 DLAFHEKRREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVD  205 (213)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHH
Confidence            11222222222222211011134778888999999999877654

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.99  E-value=7.6e-09  Score=94.64  Aligned_cols=160  Identities=12%  Similarity=0.095  Sum_probs=82.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC-CCCccccccccccCCCCCCcCCh-------------------h
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD-HLHPQSNIDKMSAKQPLNDEDRR-------------------P   94 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D-~~~~~~~~~~~~~~~~~~~~~~~-------------------~   94 (433)
                      +++|.+|+|+|++||||||+++.|++.++..++... ....+..  +...|..+..-...                   .
T Consensus         2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~--ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (205)
T PRK00300          2 MRRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRP--GEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGN   79 (205)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCC--CCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCc
Confidence            467899999999999999999999998752222211 1111100  00011111000000                   0


Q ss_pred             HHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcC-CeEEEEE-EcCHHHHHHHHHHhhCCCCCHHhHHHHHhhc-c
Q psy16778         95 WLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-RVVFIYL-KAEFGVILSRLQKRAEHFMPADLLESQFQTL-E  171 (433)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~-~~~vv~L-~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~-~  171 (433)
                      .+......+......|..+|++.....   ...+.+.. +..+|++ .++.+++.+|+.+|+..  ..+.+...+... .
T Consensus        80 ~y~~~~~~i~~~l~~g~~vi~dl~~~g---~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~--~~~~i~~rl~~~~~  154 (205)
T PRK00300         80 YYGTPRSPVEEALAAGKDVLLEIDWQG---ARQVKKKMPDAVSIFILPPSLEELERRLRGRGTD--SEEVIARRLAKARE  154 (205)
T ss_pred             cccCcHHHHHHHHHcCCeEEEeCCHHH---HHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCC--CHHHHHHHHHHHHH
Confidence            111113345666677877777765311   12222222 2344555 67799999999998642  222222222111 1


Q ss_pred             CCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        172 EPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       172 ~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                      +... ...++++|.+ .+++++..++...+..
T Consensus       155 ~~~~-~~~~d~vi~n-~~~e~~~~~l~~il~~  184 (205)
T PRK00300        155 EIAH-ASEYDYVIVN-DDLDTALEELKAIIRA  184 (205)
T ss_pred             HHHh-HHhCCEEEEC-CCHHHHHHHHHHHHHH
Confidence            1100 1124456654 3789998888777654

>PLN02842 nucleotide kinase

Probab=98.98  E-value=1.7e-09  Score=109.68  Aligned_cols=159  Identities=13%  Similarity=0.108  Sum_probs=92.2

Q ss_pred             EEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC----CCC---cCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         43 IMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP----LND---EDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        43 l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      |+|++||||||+++.|++++|+.+++++++...........|..    ...   .........+.+.+........++|+
T Consensus         2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~IL   81 (505)
T PLN02842          2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWLL   81 (505)
T ss_pred             eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEEE
Confidence            79999999999999999999999999998764321111001100    000   00111122222222221112346888


Q ss_pred             EcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCC---------------------------CCCHHhHHHH
Q psy16778        116 VCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEH---------------------------FMPADLLESQ  166 (433)
Q Consensus       116 ~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~---------------------------~~~~~~l~~~  166 (433)
                      ++.+......+.+.+...  ..+|+|+++.+++++|+..|.-+                           ....+.+...
T Consensus        82 DGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~IkkR  161 (505)
T PLN02842         82 DGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKAR  161 (505)
T ss_pred             eCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHHHH
Confidence            876655555555554332  68999999999999999887421                           1113445544


Q ss_pred             HhhccCC----CCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        167 FQTLEEP----DPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       167 ~~~~~~~----~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      +..++..    ..+...-...||.+.+++++.++|...+
T Consensus       162 L~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVfeeI~~iL  200 (505)
T PLN02842        162 LQIYKKNAEAILSTYSDIMVKIDGNRPKEVVFEEISSLL  200 (505)
T ss_pred             HHHHHHHhhhHHHhcCcEEEEEECCCCHHHHHHHHHHHH
Confidence            4333321    1111123567888789998887775554

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.97  E-value=1e-08  Score=91.73  Aligned_cols=158  Identities=14%  Similarity=0.098  Sum_probs=82.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCC--CCCCc-----------------CChhHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQ--PLNDE-----------------DRRPWLNN   98 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~--~~~~~-----------------~~~~~~~~   98 (433)
                      |.+|+|+|++||||||+++.|++.++..++......++.. .+...+.  .+...                 .....+..
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~   79 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPR-PGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGT   79 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCC-CCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCC
Confidence            5789999999999999999999977544443221111100 0000010  00000                 00011112


Q ss_pred             HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCC
Q psy16778         99 INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLV  177 (433)
Q Consensus        99 ~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~  177 (433)
                      ....+...+.+|..+|++.....  .......... ..++++..+.+.+.+|+..|...  ..+.+...+..........
T Consensus        80 ~~~~i~~~~~~g~~vi~d~~~~~--~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~--~~~~i~~rl~~~~~~~~~~  155 (180)
T TIGR03263        80 PKSPVEEALAAGKDVLLEIDVQG--ARQVKKKFPDAVSIFILPPSLEELERRLRKRGTD--SEEVIERRLAKAKKEIAHA  155 (180)
T ss_pred             cHHHHHHHHHCCCeEEEECCHHH--HHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHhcc
Confidence            23456666777888888765321  1222222222 34444567789999999988632  2222322222111100012


Q ss_pred             CCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        178 EPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       178 ~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      +.++++|.++ +.+++..++...+
T Consensus       156 ~~~d~~i~n~-~~~~~~~~l~~~~  178 (180)
T TIGR03263       156 DEFDYVIVND-DLEKAVEELKSII  178 (180)
T ss_pred             ccCcEEEECC-CHHHHHHHHHHHH
Confidence            2377888775 7888888876543

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.96  E-value=1.9e-10  Score=107.17  Aligned_cols=94  Identities=20%  Similarity=0.073  Sum_probs=69.9

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS   76 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~   76 (433)
                      |++++++|++.|+.          -..++++++++.+|++++|+||+||||||+.|.|++.+    |..++++.++....
T Consensus         1 ~~L~~~~ls~~y~~----------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~   70 (258)
T COG1120           1 MMLEVENLSFGYGG----------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLS   70 (258)
T ss_pred             CeeEEEEEEEEECC----------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcC
Confidence            57899999999986          45788899999999999999999999999999999966    78899998876421


Q ss_pred             c-ccccccCCCCCCcCChhHHHHHHHHHH
Q psy16778         77 N-IDKMSAKQPLNDEDRRPWLNNINRIIH  104 (433)
Q Consensus        77 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (433)
                      . ......++..|.......+...+-++.
T Consensus        71 ~kelAk~ia~vpQ~~~~~~~~tV~d~V~~   99 (258)
T COG1120          71 PKELAKKLAYVPQSPSAPFGLTVYELVLL   99 (258)
T ss_pred             HHHHhhhEEEeccCCCCCCCcEEeehHhh
Confidence            1 112344666666444344444433333

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.94  E-value=2.8e-08  Score=96.93  Aligned_cols=145  Identities=19%  Similarity=0.256  Sum_probs=88.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhC------CeEEeCCCCCcccccc---------------------------ccccCCCC
Q psy16778         41 FVIMGVSGSGKSTIGESLATRLG------VKFIDGDHLHPQSNID---------------------------KMSAKQPL   87 (433)
Q Consensus        41 I~l~G~~GsGKSTla~~La~~lg------~~~id~D~~~~~~~~~---------------------------~~~~~~~~   87 (433)
                      ++|+|++||||||+++.|+..++      +.+++.|+++......                           .+..|...
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~~   81 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSEL   81 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence            68999999999999999998875      3489999987321100                           00001111


Q ss_pred             CCc-----CCh-hHHHH-----------------HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhc----CC-eEEEEE
Q psy16778         88 NDE-----DRR-PWLNN-----------------INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNN----NR-VVFIYL  139 (433)
Q Consensus        88 ~~~-----~~~-~~~~~-----------------~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~----~~-~~vv~L  139 (433)
                      +.+     ..+ ...+.                 ....+...+..+.-+|+|.......+|..+...    .. +.+||+
T Consensus        82 ~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~l  161 (340)
T TIGR03575        82 SAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFL  161 (340)
T ss_pred             cCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEE
Confidence            000     000 00000                 011111222333347778777777777655543    22 789999


Q ss_pred             EcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCC---CCCCCeEEEcc
Q psy16778        140 KAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDP---LVEPDVRTVSV  186 (433)
Q Consensus       140 ~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~Id~  186 (433)
                      ++|.+++.+|..+|. ...+.+.+......++.|..   -.+...++++.
T Consensus       162 d~ple~~l~RN~~R~-~~v~devie~m~~r~E~P~~~~nrWd~pl~~v~~  210 (340)
T TIGR03575       162 DCPVESCLLRNKQRP-VPLPDETIQLMGRKIEKPNPEKNAWEHNSLVIQS  210 (340)
T ss_pred             eCCHHHHHHHHhcCC-CCCCHHHHHHHHHHhcCCCCCCCCCCCCeEEEec
Confidence            999999999999996 45667777877777777653   13446677765

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.94  E-value=1.7e-08  Score=91.83  Aligned_cols=155  Identities=16%  Similarity=0.159  Sum_probs=80.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCcccccccc--ccCCCCCCcCChhHHHHHHHHHHHhhh------
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDKM--SAKQPLNDEDRRPWLNNINRIIHQLNV------  108 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------  108 (433)
                      +|+|+|++||||||+++.|++.+   ++.+++.|++.........  ..+..+..+.... .+.+.+.+..+..      
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~   79 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFD-FDLLISHLQDLKNGKSVEI   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCccc-HHHHHHHHHHHHCCCCEec
Confidence            48999999999999999999987   4678999987643211110  1111222111111 1222222322211      


Q ss_pred             -----------------CCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhC--CCCCHHhHHHHH--
Q psy16778        109 -----------------DNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAE--HFMPADLLESQF--  167 (433)
Q Consensus       109 -----------------~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~--~~~~~~~l~~~~--  167 (433)
                                       ....+||..+...-. ...+.+.. ..+|||+++.++++.|..+|..  +....+.....+  
T Consensus        80 p~~d~~~~~~~~~~~~i~~~~~vI~eg~~~~~-~~~~~~~~-d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~  157 (198)
T cd02023          80 PVYDFKTHSRLKETVTVYPADVIILEGILALY-DKELRDLM-DLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLK  157 (198)
T ss_pred             cccccccCcccCCceecCCCCEEEEechhhcc-chhHHhhc-CeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence                             111233333321111 11122222 4799999999998888776642  222222222222  


Q ss_pred             ------hhccCCCCCCCCCeEEEccCCCHHHHHHHHhc
Q psy16778        168 ------QTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAI  199 (433)
Q Consensus       168 ------~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~  199 (433)
                            ..+..++  ++.++++|+++.+..+.+..+.+
T Consensus       158 ~~~~~~~~~i~~~--~~~aD~ii~~~~~~~~~~~~~~~  193 (198)
T cd02023         158 FVKPMHEQFIEPT--KRYADVIIPRGGDNHVAIDLIVQ  193 (198)
T ss_pred             hhhhhHHHhCccc--hhceeEEECCCCCccHHHHHHHH
Confidence                  1222222  66689999987555555554443

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=98.93  E-value=2.7e-09  Score=104.42  Aligned_cols=170  Identities=20%  Similarity=0.194  Sum_probs=105.1

Q ss_pred             HHhhhcceeeccccc--CCCCCCceeeeCCCccCCceeechhhhccccCccc---hHHHHHHHHhcCCceEEecCCC---
Q psy16778        220 QFALKVLRIRPRVMR--DLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEG---EIGNAAAVGEVGGIYILSTIST---  291 (433)
Q Consensus       220 ~~a~~~~~l~pr~l~--~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~---e~~~a~aa~~~g~~~~~s~~s~---  291 (433)
                      ...|+.|.|+|+.|.  ++.++||+|++||.+++.||+++|+++.   ++.+   -..+|++|.+.|+++++.+.+.   
T Consensus        19 ~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg---~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~   95 (326)
T cd02811          19 STGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGG---SEKAKEINRNLAEAAEELGIAMGVGSQRAALE   95 (326)
T ss_pred             CCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCC---ChHHHHHHHHHHHHHHHcCCCeEecCchhhcc
Confidence            356899999999999  8889999999999999999999999763   3433   3669999999999998887742   


Q ss_pred             -----CCHHHHHHhCCCCcceEEEeecc----CHHHHHHHHHHHHHcCCcEEEEeeeecc-cCccccccccccCCCccch
Q psy16778        292 -----TSIEELAEKTPQTTKWFQLYIYR----DREITKSLVQRAEKAGYKALVLTVDTNV-FGTRYADIRNKFNMPSHLN  361 (433)
Q Consensus       292 -----~~~eeva~~~~~~~~w~qly~~~----d~~~~~~~~~~A~~ag~~~i~ltvD~~~-~G~r~~~~~~~~~~~~~~s  361 (433)
                           .+++.+.+..++.+...-+....    +.+..   .+..+..++.++-+.+..+. ...++.+  ..|. .-.-.
T Consensus        96 ~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~---~~~i~~~~adalel~l~~~q~~~~~~~~--~df~-~~~~~  169 (326)
T cd02811          96 DPELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEA---RRAVEMIEADALAIHLNPLQEAVQPEGD--RDFR-GWLER  169 (326)
T ss_pred             ChhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHH---HHHHHhcCCCcEEEeCcchHhhcCCCCC--cCHH-HHHHH
Confidence                 23445544444444333333222    33433   33334456777777663211 1111111  0010 00012


Q ss_pred             HHHHHhhCCCcchhhhhhccCCH---HHHHHHHHHHHHcCCcEEEEe
Q psy16778        362 IEELAEKTPQTTKWFQLYIYRDR---EITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       362 ~e~i~~~~~~~~~w~Qly~~~~~---~~~~~~~~ra~~~G~~aivlT  405 (433)
                      ++.+.+..       .+++..+.   .++.+.+++++++|+++|+|+
T Consensus       170 i~~l~~~~-------~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vs  209 (326)
T cd02811         170 IEELVKAL-------SVPVIVKEVGFGISRETAKRLADAGVKAIDVA  209 (326)
T ss_pred             HHHHHHhc-------CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence            33333322       22222222   377899999999999999985

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.93  E-value=7.4e-10  Score=101.19  Aligned_cols=103  Identities=18%  Similarity=0.168  Sum_probs=79.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc--
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ--   75 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~--   75 (433)
                      ++++.+|++.|+...    .  ....+.++++++++|+.++|+|||||||||+..+++...    |..++++-++...  
T Consensus         1 ~i~~~~v~k~y~~~~----~--~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~   74 (226)
T COG1136           1 MIELKNVSKIYGLGG----E--KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSE   74 (226)
T ss_pred             CcEEeeeEEEeccCC----c--ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCH
Confidence            467899999997521    1  145888999999999999999999999999999999855    6667777554321  


Q ss_pred             ---ccccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778         76 ---SNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN  110 (433)
Q Consensus        76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (433)
                         ...+....|++||.....+.++..+++...+.-.+
T Consensus        75 ~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~  112 (226)
T COG1136          75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG  112 (226)
T ss_pred             HHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC
Confidence               11233456999999999999999999988766555

>PLN02924 thymidylate kinase

Probab=98.91  E-value=3e-08  Score=91.56  Aligned_cols=166  Identities=15%  Similarity=0.123  Sum_probs=89.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccc---c----ccc-cccCCCCCCcCChhHH--HH--HHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS---N----IDK-MSAKQPLNDEDRRPWL--NN--INRI  102 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~---~----~~~-~~~~~~~~~~~~~~~~--~~--~~~~  102 (433)
                      ..+|+.|+|.|..||||||+++.|++.+....+....+..+.   .    ... +..+.........-.+  .+  ....
T Consensus        13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~   92 (220)
T PLN02924         13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKRSL   92 (220)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999943322221111110   0    000 0001011110000001  11  1233


Q ss_pred             HHHhhhCCCcEEEEcCc-----------ccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhh
Q psy16778        103 IHQLNVDNLTGVLVCSA-----------LRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQT  169 (433)
Q Consensus       103 ~~~~~~~~~~~Vi~~~~-----------~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~  169 (433)
                      +...+..|..+|.|-..           ....+...+.....  ++++||++|+++..+|...+..+....+.++...+.
T Consensus        93 I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~~~E~~~~~~rv~~~  172 (220)
T PLN02924         93 MERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEKLEFQKKVAKR  172 (220)
T ss_pred             HHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccccHHHHHHHHHH
Confidence            55666677655555322           11223333332222  799999999999999975433222233333333333


Q ss_pred             ccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        170 LEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       170 ~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                      +.....   ....+||.+.+++++..+|.+.+..
T Consensus       173 Y~~la~---~~~~vIDa~~sieeV~~~I~~~I~~  203 (220)
T PLN02924        173 FQTLRD---SSWKIIDASQSIEEVEKKIREVVLD  203 (220)
T ss_pred             HHHHhh---cCEEEECCCCCHHHHHHHHHHHHHH
Confidence            333321   2456778889999999988766543

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.91  E-value=9.6e-10  Score=100.02  Aligned_cols=84  Identities=25%  Similarity=0.166  Sum_probs=65.5

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS   76 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~   76 (433)
                      |+++++|++++|+.... ++     ..++++++++.+|+.++|+|.|||||||+++.|++..    |...+++..+....
T Consensus         2 ~~l~v~nl~~~y~~~~~-~~-----~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~   75 (252)
T COG1124           2 TLLSVRNLSIVYGGGKF-AF-----HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKK   75 (252)
T ss_pred             ceEEEeceEEEecCCcc-hh-----hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccc
Confidence            58999999999987441 11     5899999999999999999999999999999999955    78888887665321


Q ss_pred             --cccccccCCCCCCc
Q psy16778         77 --NIDKMSAKQPLNDE   90 (433)
Q Consensus        77 --~~~~~~~~~~~~~~   90 (433)
                        ........++||++
T Consensus        76 ~~~~~~~~VQmVFQDp   91 (252)
T COG1124          76 RAKAFYRPVQMVFQDP   91 (252)
T ss_pred             cchhhccceeEEecCC
Confidence              01122456778875

>PRK12338 hypothetical protein; Provisional

Probab=98.91  E-value=2.4e-08  Score=96.11  Aligned_cols=161  Identities=23%  Similarity=0.254  Sum_probs=93.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE-eCCCCCccccccccccCCC-------------CCCcC-----C---h
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFI-DGDHLHPQSNIDKMSAKQP-------------LNDED-----R---R   93 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~i-d~D~~~~~~~~~~~~~~~~-------------~~~~~-----~---~   93 (433)
                      .++.+|+|+|+|||||||+|+.||+++|+.++ ++|.+..- ........+.             ...+.     .   .
T Consensus         2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~-~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~   80 (319)
T PRK12338          2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREV-VRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELIC   80 (319)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHH-HcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHH
Confidence            45689999999999999999999999999988 55544321 0000000000             00000     0   0


Q ss_pred             hHH--------HHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHh--cCCeEEEEEEcCHHHHHHHHHHhhCCCCC----
Q psy16778         94 PWL--------NNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRN--NNRVVFIYLKAEFGVILSRLQKRAEHFMP----  159 (433)
Q Consensus        94 ~~~--------~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~--~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~----  159 (433)
                      ..|        ..++.++......|.++||.+..+.+.+....+.  ......+.+..+.++..+|...|......    
T Consensus        81 ~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~~~~  160 (319)
T PRK12338         81 AGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRAMEIKRGGKQ  160 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhhccCCchhh
Confidence            111        2334455555678889999998888877664442  11234555568899999999886521111    


Q ss_pred             ---HH---hHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        160 ---AD---LLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       160 ---~~---~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                         ..   .+.+++...   .  ++....+| .+.+.++.++.+.+.+..
T Consensus       161 l~~f~~Ir~Iq~~l~~~---A--~e~~VpvI-~N~did~Tv~~ile~I~e  204 (319)
T PRK12338        161 LEYFRENRIIHDHLVEQ---A--REHNVPVI-KNDDIDCTVKKMLSYIRE  204 (319)
T ss_pred             hhChHHHHHHHHHHHHh---H--hhCCCcee-CCCcHHHHHHHHHHHHHh
Confidence               11   122222222   1  22233334 347888888888777654

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.89  E-value=7.8e-10  Score=103.57  Aligned_cols=97  Identities=18%  Similarity=0.161  Sum_probs=78.3

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc-
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-   75 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-   75 (433)
                      |++.++++++.|+.          -.++.+.++++..|+.++|.|+|||||||+.|++|+..    |..+++...+... 
T Consensus         1 m~i~i~~~~~~~~~----------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~   70 (345)
T COG1118           1 MSIRINNVKKRFGA----------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVS   70 (345)
T ss_pred             Cceeehhhhhhccc----------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchh
Confidence            88999999999998          34666888999999999999999999999999999966    7788887743321 


Q ss_pred             -ccccccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778         76 -SNIDKMSAKQPLNDEDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        76 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (433)
                       ........|+.||+...++.++..+++...+.
T Consensus        71 ~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~  103 (345)
T COG1118          71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLK  103 (345)
T ss_pred             ccchhhcceeEEEechhhcccchHHhhhhhccc
Confidence             12234467999999888888888888877664

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.89  E-value=1.3e-08  Score=109.83  Aligned_cols=48  Identities=23%  Similarity=0.326  Sum_probs=39.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP   86 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~   86 (433)
                      .+|+|.|+|||||||+++.||+++|+.+++++.+++...+..+..+..
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~   49 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGID   49 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCC
Confidence            489999999999999999999999999999999987644433333433

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.88  E-value=2.5e-08  Score=94.69  Aligned_cols=151  Identities=22%  Similarity=0.319  Sum_probs=83.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCccccccccccCCCCCCcCChhHHH-HHHHHHHHhhhCCCc
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN-NINRIIHQLNVDNLT  112 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  112 (433)
                      ..|+|+|.|||||||+++.|.+.+     .+.+++.+.+.       ..... +.+...+...+ .+...+...+....-
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-------~~~~~-y~~~~~Ek~~R~~l~s~v~r~ls~~~i   73 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-------IDRND-YADSKKEKEARGSLKSAVERALSKDTI   73 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH--------TTSS-S--GGGHHHHHHHHHHHHHHHHTT-SE
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-------cchhh-hhchhhhHHHHHHHHHHHHHhhccCeE
Confidence            379999999999999999999976     33445544432       11111 33333333333 445556666656656


Q ss_pred             EEEEcCcccHHHHHHHH----hcCC-eEEEEEEcCHHHHHHHHHHhhCC-CCCHHhHHHHHhhccCCCCC--CCCCeEEE
Q psy16778        113 GVLVCSALRRNYRDIIR----NNNR-VVFIYLKAEFGVILSRLQKRAEH-FMPADLLESQFQTLEEPDPL--VEPDVRTV  184 (433)
Q Consensus       113 ~Vi~~~~~~~~~~~~l~----~~~~-~~vv~L~~~~e~l~~Rl~~R~~~-~~~~~~l~~~~~~~~~~~~~--~~~~~~~I  184 (433)
                      +|+|.......+|..+.    +... .-+||+.++.+.+..|..+|... ..+.+.+.....++|+|...  .+...++|
T Consensus        74 VI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i  153 (270)
T PF08433_consen   74 VILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRWDSPLFTI  153 (270)
T ss_dssp             EEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GGGS-SEEE
T ss_pred             EEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCccCCeEEE
Confidence            67777665666654333    3333 78999999999999999999743 26688899999999988641  12346777


Q ss_pred             c-cC--CCHHHHHHHH
Q psy16778        185 S-VN--EPLEGIVSKS  197 (433)
Q Consensus       185 d-~~--~~~ee~~~~i  197 (433)
                      + .+  .+.+++.+.+
T Consensus       154 ~~~~~~~~~~~I~~~l  169 (270)
T PF08433_consen  154 DSSDEELPLEEIWNAL  169 (270)
T ss_dssp             E-TTS---HHHHHHHH
T ss_pred             ecCCCCCCHHHHHHHH
Confidence            7 33  4556666666

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.87  E-value=4.7e-10  Score=102.10  Aligned_cols=99  Identities=16%  Similarity=0.205  Sum_probs=82.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc--
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ--   75 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~--   75 (433)
                      .+++++|++.||+          .++++++++++.+|++++|+||+||||||+-..+++.+    |...+++.++...  
T Consensus         4 lL~v~~l~k~FGG----------l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p   73 (250)
T COG0411           4 LLEVRGLSKRFGG----------LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPP   73 (250)
T ss_pred             eeeeccceeecCC----------EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCH
Confidence            4678999999998          78999999999999999999999999999999999877    8888999888642  


Q ss_pred             ccccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778         76 SNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN  110 (433)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (433)
                      ....++.....||....++.++.+++++.......
T Consensus        74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~  108 (250)
T COG0411          74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARL  108 (250)
T ss_pred             HHHHhccceeecccccccCCCcHHHHHHHHhhhhh
Confidence            22334445667888878888899999988766443

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.86  E-value=1.4e-09  Score=102.05  Aligned_cols=104  Identities=19%  Similarity=0.162  Sum_probs=81.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc--
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ--   75 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~--   75 (433)
                      |+++++|+|+|+..     ......+++++++++++|.+++|+|.|||||||+.|.+...-    |-.+++++++..-  
T Consensus         1 mI~l~~vsK~~~~~-----~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~   75 (339)
T COG1135           1 MIELENVSKTFGQT-----GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSE   75 (339)
T ss_pred             CeEEEeeeeeeccC-----CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCCh
Confidence            57899999999751     122256888999999999999999999999999999888633    8889999877531  


Q ss_pred             ccc--cccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778         76 SNI--DKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN  110 (433)
Q Consensus        76 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (433)
                      ...  .+...|++||........+..++++..+..++
T Consensus        76 ~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag  112 (339)
T COG1135          76 AELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG  112 (339)
T ss_pred             HHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC
Confidence            111  23456999999887777778888888877666

>smart00072 GuKc Guanylate kinase homologues

Probab=98.86  E-value=3e-08  Score=89.17  Aligned_cols=157  Identities=13%  Similarity=0.148  Sum_probs=83.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeCCCCCccccccccccCCCCCCcCCh-----------------hHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL--GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRR-----------------PWLNN   98 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~   98 (433)
                      ++.|+|+||+||||+|+++.|.+.+  ++.++-............-...+.|-.....                 ..+-.
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            5789999999999999999999986  4444443333322110000011111110000                 01111


Q ss_pred             HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEE-cCHHHHHHHHHHhhCCCCCHHhHHHHHhhccC-CCC
Q psy16778         99 INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLK-AEFGVILSRLQKRAEHFMPADLLESQFQTLEE-PDP  175 (433)
Q Consensus        99 ~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~-~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~-~~~  175 (433)
                      -...+......++.+|++...   .....+++... .++|||. .+.+.+.+|+.+|+..  ..+.+..++..-.. ...
T Consensus        82 ~~~~i~~~~~~~~~~ild~~~---~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~--~~~~i~~rl~~a~~~~~~  156 (184)
T smart00072       82 SKETIRQVAEQGKHCLLDIDP---QGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTE--TAERIQKRLAAAQKEAQE  156 (184)
T ss_pred             CHHHHHHHHHcCCeEEEEECH---HHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHhh
Confidence            122345555678888888773   22233444333 5899998 6677899999988642  22223222221111 000


Q ss_pred             CCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        176 LVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       176 ~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                       ....+.+|.++ +.++..++++..+
T Consensus       157 -~~~fd~~I~n~-~l~~~~~~l~~~i  180 (184)
T smart00072      157 -YHLFDYVIVND-DLEDAYEELKEIL  180 (184)
T ss_pred             -hccCCEEEECc-CHHHHHHHHHHHH
Confidence             01145666665 6777777766554

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>TIGR00235 udk uridine kinase

Probab=98.85  E-value=7.7e-08  Score=88.22  Aligned_cols=158  Identities=16%  Similarity=0.155  Sum_probs=86.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CeEEeCCCCCcccccc--ccccCCCCCCcCChhHHHHHHHHHHHhhhC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG---VKFIDGDHLHPQSNID--KMSAKQPLNDEDRRPWLNNINRIIHQLNVD  109 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg---~~~id~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (433)
                      .++|.+|+|+|++||||||+++.|++.++   +.++..|.........  ....+..++.+....+ ..+.+.+..+...
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~g   81 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDN-DLLYEHLKNLKNG   81 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHH-HHHHHHHHHHHCC
Confidence            35778999999999999999999999875   6688888875321110  1122444544332222 2223333332211


Q ss_pred             -----------------------CCcE-EEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCC--CCCHHhH
Q psy16778        110 -----------------------NLTG-VLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH--FMPADLL  163 (433)
Q Consensus       110 -----------------------~~~~-Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~--~~~~~~l  163 (433)
                                             ...+ |+++....  +.+.+.+.. ..+|||+++.++++.|...|...  -...+..
T Consensus        82 ~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~--~~~~~~~~~-d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~  158 (207)
T TIGR00235        82 SPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPL--FDERLRDLM-DLKIFVDTPLDIRLIRRIERDINERGRSLDSV  158 (207)
T ss_pred             CCEecccceeecCCCCCceEEeCCCCEEEEEehhhh--chHhHHHhC-CEEEEEECChhHHHHHHHHHHHHhhCCCHHHH
Confidence                                   1122 22322211  112233222 47999999999999998777421  1122222


Q ss_pred             HHHHh--------hccCCCCCCCCCeEEEccCCCHHHHHHHHh
Q psy16778        164 ESQFQ--------TLEEPDPLVEPDVRTVSVNEPLEGIVSKSA  198 (433)
Q Consensus       164 ~~~~~--------~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~  198 (433)
                      ..++.        .+..+  .+..++++|++...-+..++.+.
T Consensus       159 ~~~~~~~~~~~~~~~i~~--~~~~Ad~vi~~~~~~~~~~~~~~  199 (207)
T TIGR00235       159 IDQYRKTVRPMYEQFVEP--TKQYADLIIPEGGRNEVAINVLD  199 (207)
T ss_pred             HHHHHHhhhhhHHHhCcc--cccccEEEEcCCCCchHHHHHHH
Confidence            22221        11112  25568899988766666555443

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.85  E-value=5.9e-09  Score=91.59  Aligned_cols=97  Identities=20%  Similarity=0.245  Sum_probs=78.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++.++.+|-+|...+        -..+.++++++..+..+++.|+|||||||+..++|.-.    |..-++.-.+..+  
T Consensus         3 ~l~~~~~sl~y~g~~--------~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gP--   72 (259)
T COG4525           3 MLNVSHLSLSYEGKP--------RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGP--   72 (259)
T ss_pred             eeehhheEEecCCcc--------hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCC--
Confidence            677889999998744        34677889999999999999999999999999999854    5566666555433  


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN  110 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (433)
                        +...|..||++...+|++.++++...+...|
T Consensus        73 --gaergvVFQ~~~LlPWl~~~dNvafgL~l~G  103 (259)
T COG4525          73 --GAERGVVFQNEALLPWLNVIDNVAFGLQLRG  103 (259)
T ss_pred             --CccceeEeccCccchhhHHHHHHHHHHHhcC
Confidence              3356899999999999999999887776555

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.85  E-value=3.6e-08  Score=86.51  Aligned_cols=116  Identities=16%  Similarity=0.127  Sum_probs=68.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhH-----------------HHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPW-----------------LNNI   99 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~   99 (433)
                      +|.+++|+||||+||||+.+.|-+..++.+--+-..+.+.....-...+-|-...++..                 +-.-
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~   82 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTS   82 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCc
Confidence            78999999999999999999999988555433333333221111111222222111111                 1111


Q ss_pred             HHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcC-HHHHHHHHHHhhC
Q psy16778        100 NRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAE-FGVILSRLQKRAE  155 (433)
Q Consensus       100 ~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~-~e~l~~Rl~~R~~  155 (433)
                      ...+...+..|.+++++....-.   ..+++..+ .+.||+.+| .+++.+|+..|+.
T Consensus        83 ~~~ve~~~~~G~~vildId~qGa---~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgt  137 (191)
T COG0194          83 REPVEQALAEGKDVILDIDVQGA---LQVKKKMPNAVSIFILPPSLEELERRLKGRGT  137 (191)
T ss_pred             HHHHHHHHhcCCeEEEEEehHHH---HHHHHhCCCeEEEEEcCCCHHHHHHHHHccCC
Confidence            33355666788888887653111   12233222 567777766 8899999998874

>PRK06696 uridine kinase; Validated

Probab=98.82  E-value=1.2e-08  Score=94.76  Aligned_cols=41  Identities=27%  Similarity=0.387  Sum_probs=34.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeE--EeCCCCCcc
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL---GVKF--IDGDHLHPQ   75 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~--id~D~~~~~   75 (433)
                      ...+.+|+|.|++||||||+++.|++.+   |..+  +++|+++..
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~   64 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP   64 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence            3467899999999999999999999999   5554  559998754

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.82  E-value=1.4e-08  Score=92.25  Aligned_cols=135  Identities=15%  Similarity=0.144  Sum_probs=88.9

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS   76 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~   76 (433)
                      |++++++|+++||.          ++++++.++++.+|++.+|.|++||||||.-|++.+.+    |...+++..+... 
T Consensus         1 ~~L~ie~vtK~Fg~----------k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~-   69 (300)
T COG4152           1 MALEIEGVTKSFGD----------KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE-   69 (300)
T ss_pred             CceEEecchhccCc----------eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh-
Confidence            79999999999998          88999999999999999999999999999999999866    6677777666422 


Q ss_pred             cccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         77 NIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                        .....|+.+.+....+..+..+.+..-....|-+    -.........++....  ++-+.+-..+++.+..+|.-
T Consensus        70 --~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~----~~e~~~~~~~wLer~~--i~~~~~~kIk~LSKGnqQKI  139 (300)
T COG4152          70 --IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMP----KAEIQKKLQAWLERLE--IVGKKTKKIKELSKGNQQKI  139 (300)
T ss_pred             --hhhhcccChhhhccCccCcHHHHHHHHHHhcCCc----HHHHHHHHHHHHHhcc--ccccccchHHHhhhhhhHHH
Confidence              1224566665544444444433332221122211    0000122233444442  56667777888888877654

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.81  E-value=3.2e-08  Score=88.76  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=33.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCCcc
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLHPQ   75 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~~~   75 (433)
                      +|+|.|.|||||||+++.|++.+ +..+++.|+++..
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~   37 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP   37 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence            48999999999999999999998 7999999999754

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.81  E-value=2.2e-09  Score=97.34  Aligned_cols=99  Identities=19%  Similarity=0.191  Sum_probs=80.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS-   76 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~-   76 (433)
                      .+++++|++.||.          -..+.++++++.+|++.+|+|+|||||||+.|.+...+    |...+++.++..-. 
T Consensus         8 ~I~vr~v~~~fG~----------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~   77 (263)
T COG1127           8 LIEVRGVTKSFGD----------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSE   77 (263)
T ss_pred             eEEEeeeeeecCC----------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCH
Confidence            5789999999998          44778888999999999999999999999999999977    88899999875321 


Q ss_pred             -cc--cccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778         77 -NI--DKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN  110 (433)
Q Consensus        77 -~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (433)
                       ..  .....|+.||.-..+..++..+|+...+.++.
T Consensus        78 ~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~  114 (263)
T COG1127          78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT  114 (263)
T ss_pred             HHHHHHHhheeEEeeccccccccchhHhhheehHhhc
Confidence             11  12346889998877888888888877766554

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=98.81  E-value=1.1e-08  Score=100.89  Aligned_cols=169  Identities=18%  Similarity=0.187  Sum_probs=103.2

Q ss_pred             Hhhhcceeeccccc--CCCCCCceeeeCCCccCCceeechhhhccccCccc---hHHHHHHHHhcCCceEEecCCC----
Q psy16778        221 FALKVLRIRPRVMR--DLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEG---EIGNAAAVGEVGGIYILSTIST----  291 (433)
Q Consensus       221 ~a~~~~~l~pr~l~--~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~---e~~~a~aa~~~g~~~~~s~~s~----  291 (433)
                      ..|++++|.|+.|.  +..++||+|++||.+++.||+++|+++.   ++..   -..+|++|.++|+++++.....    
T Consensus        28 ~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGg---s~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~  104 (352)
T PRK05437         28 TGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGG---SEKAKEINRKLAEAAEELGIAMGVGSQRAALKD  104 (352)
T ss_pred             CChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCC---ChhHHHHHHHHHHHHHHcCCCeEecccHhhccC
Confidence            45899999999998  7789999999999999999999998754   2322   2569999999999998877652    


Q ss_pred             ----CCHHHHHHhCCCCcceEEEeeccC----HHHHHHHHHHHHHcCCcEEEEeeeec-ccCccccccccccCCCccchH
Q psy16778        292 ----TSIEELAEKTPQTTKWFQLYIYRD----REITKSLVQRAEKAGYKALVLTVDTN-VFGTRYADIRNKFNMPSHLNI  362 (433)
Q Consensus       292 ----~~~eeva~~~~~~~~w~qly~~~d----~~~~~~~~~~A~~ag~~~i~ltvD~~-~~G~r~~~~~~~~~~~~~~s~  362 (433)
                          .++..+.+..|+.+.+.-+.....    .+.   ..+..+..++.++-+.+..+ -...++.+  ..|    ..-+
T Consensus       105 ~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~---~~~~~~~~~adal~l~l~~~qe~~~p~g~--~~f----~~~l  175 (352)
T PRK05437        105 PELADSFSVVRKVAPDGLLFANLGAVQLYGYGVEE---AQRAVEMIEADALQIHLNPLQELVQPEGD--RDF----RGWL  175 (352)
T ss_pred             hhhHHHHHHHHHHCCCceEEeecCccccCCCCHHH---HHHHHHhcCCCcEEEeCccchhhcCCCCc--ccH----HHHH
Confidence                234444445555554444433322    333   33334455677776655211 01111111  001    1011


Q ss_pred             HHHHhhCCCcchhhhhhccCCH---HHHHHHHHHHHHcCCcEEEEe
Q psy16778        363 EELAEKTPQTTKWFQLYIYRDR---EITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       363 e~i~~~~~~~~~w~Qly~~~~~---~~~~~~~~ra~~~G~~aivlT  405 (433)
                      +.|......    ..+++..|.   .++.+.++.++++|+++|+|+
T Consensus       176 e~i~~i~~~----~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs  217 (352)
T PRK05437        176 DNIAEIVSA----LPVPVIVKEVGFGISKETAKRLADAGVKAIDVA  217 (352)
T ss_pred             HHHHHHHHh----hCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence            223222110    122332222   377899999999999999994

>PRK06761 hypothetical protein; Provisional

Probab=98.80  E-value=8.6e-09  Score=97.89  Aligned_cols=120  Identities=18%  Similarity=0.203  Sum_probs=78.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccc--ccccccCCCCCCcCChhHHHHHHH----HHHHhhhCCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN--IDKMSAKQPLNDEDRRPWLNNINR----IIHQLNVDNL  111 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  111 (433)
                      +++|+|+|++||||||+++.|++.+....++.+.+.....  -........+..+....+.+....    ........+.
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~   82 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD   82 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999654333332211100  001111233444444444444444    3344456777


Q ss_pred             cEEEEcCcccHHHHHHHHhc--CC--eEEEEEEcCHHHHHHHHHHhhCCCC
Q psy16778        112 TGVLVCSALRRNYRDIIRNN--NR--VVFIYLKAEFGVILSRLQKRAEHFM  158 (433)
Q Consensus       112 ~~Vi~~~~~~~~~~~~l~~~--~~--~~vv~L~~~~e~l~~Rl~~R~~~~~  158 (433)
                      .+|+.+......+++.+.+.  ..  ...+| +.|++.+.+|+..|.+++.
T Consensus        83 ~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~~~rw~~f~  132 (282)
T PRK06761         83 YYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELITDRWNDFA  132 (282)
T ss_pred             eEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHHHHHHHHHH
Confidence            88999999999999988851  11  34566 9999999999988875443

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.80  E-value=2.1e-09  Score=106.36  Aligned_cols=141  Identities=13%  Similarity=0.071  Sum_probs=88.3

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS   76 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~   76 (433)
                      |+++++++++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++....
T Consensus         1 ~~L~i~~l~~~~~~----------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~   70 (353)
T PRK10851          1 MSIEIANIKKSFGR----------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH   70 (353)
T ss_pred             CEEEEEEEEEEeCC----------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC
Confidence            78999999999975          23677788999999999999999999999999999976    77778776654211


Q ss_pred             cccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         77 NIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      . .....++.+|+....+.++..+++.......+...-.+.....+...+.+....  +--+++..+..+....++|-
T Consensus        71 ~-~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--L~~~~~~~~~~LSgGq~QRv  145 (353)
T PRK10851         71 A-RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQ--LAHLADRYPAQLSGGQKQRV  145 (353)
T ss_pred             H-HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcC--CchhhhCChhhCCHHHHHHH
Confidence            1 123457888876666656666666544321100000000001122233444432  23345666666666666654

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.79  E-value=1.9e-07  Score=86.98  Aligned_cols=152  Identities=17%  Similarity=0.162  Sum_probs=79.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC----C-eE-EeCCCCCccccccccccCCCCC--CcCChhHHHHHHHHHHHh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG----V-KF-IDGDHLHPQSNIDKMSAKQPLN--DEDRRPWLNNINRIIHQL  106 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg----~-~~-id~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  106 (433)
                      ..++.+|+|+|++||||||+++.|++.+.    . .. ++.|++........ ..+....  .+.... ...+...+..+
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~-~~g~~~~~~~~~~~d-~~~~~~~l~~l  107 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLD-AHGLRPRKGAPETFD-VAGLAALLRRL  107 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHH-hcccccccCCCCCCC-HHHHHHHHHHH
Confidence            45678999999999999999999999872    2 23 77777654321111 1122111  011111 11111111111


Q ss_pred             hh-------------------------CCCcEEEEcCccc---HHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhC-CC
Q psy16778        107 NV-------------------------DNLTGVLVCSALR---RNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAE-HF  157 (433)
Q Consensus       107 ~~-------------------------~~~~~Vi~~~~~~---~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~-~~  157 (433)
                      ..                         ....+||..+...   ......+.... ..+|||++|.+++.+|+.+|.. .-
T Consensus       108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~-D~vi~v~~~~~~~~~R~~~R~~~~g  186 (229)
T PRK09270        108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLF-DFTIFLDAPAEVLRERLVARKLAGG  186 (229)
T ss_pred             HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhcC
Confidence            10                         0233455544422   11223333333 4899999999999999999841 11


Q ss_pred             CCHHhHHHHHhhccCC-----CCCCCCCeEEEccCCC
Q psy16778        158 MPADLLESQFQTLEEP-----DPLVEPDVRTVSVNEP  189 (433)
Q Consensus       158 ~~~~~l~~~~~~~~~~-----~~~~~~~~~~Id~~~~  189 (433)
                      ...+.+...+.....+     ...+..++++|+++.+
T Consensus       187 ~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~~~  223 (229)
T PRK09270        187 LSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMTAT  223 (229)
T ss_pred             CCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEecCC
Confidence            2233333333221111     0014558899988744

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.78  E-value=7.9e-09  Score=89.85  Aligned_cols=91  Identities=16%  Similarity=0.120  Sum_probs=70.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      |+.+++|++.|++            .+..+.+++..+++++|+|+|||||||+...+|+-.    |...|++.+......
T Consensus         1 ~l~L~~V~~~y~~------------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P   68 (231)
T COG3840           1 MLALDDVRFSYGH------------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP   68 (231)
T ss_pred             CccccceEEeeCc------------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc
Confidence            5789999999986            233455678999999999999999999999999955    778888887754322


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHHH
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIHQ  105 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (433)
                       ...+..+.||+.+.+..++..+++-..
T Consensus        69 -~~RPVSmlFQEnNLFaHLtV~qNigLG   95 (231)
T COG3840          69 -AERPVSMLFQENNLFAHLTVAQNIGLG   95 (231)
T ss_pred             -ccCChhhhhhccccchhhhhhhhhccc
Confidence             233667889988887777766665443

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=98.78  E-value=4e-08  Score=89.99  Aligned_cols=139  Identities=19%  Similarity=0.270  Sum_probs=88.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHh--hhCCCcEEEE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQL--NVDNLTGVLV  116 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Vi~  116 (433)
                      .+|+|+|+|||||||..+.|.+ +|+.++|  ++..                ...+.+   -+.+...  ....-.++||
T Consensus         2 ~lvIVTGlSGAGKsvAl~~lED-lGyycvD--NLPp----------------~Llp~~---~~~~~~~~~~~~kvAv~iD   59 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVLED-LGYYCVD--NLPP----------------QLLPKL---ADLMLTLESRITKVAVVID   59 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHHHh-cCeeeec--CCCH----------------HHHHHH---HHHHhhcccCCceEEEEEe
Confidence            4789999999999999999988 6888875  3311                111111   1111111  1122235555


Q ss_pred             cCc-----ccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHH-hhCCCCCHH-----hHHHHHhhccCCCCCCCCCeEE
Q psy16778        117 CSA-----LRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQK-RAEHFMPAD-----LLESQFQTLEEPDPLVEPDVRT  183 (433)
Q Consensus       117 ~~~-----~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~-R~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~  183 (433)
                      .-.     ...+....+++..+  ..++||+++.+++.+|... |+.+|....     .+....+.+.+.   ++.++++
T Consensus        60 iRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pL---k~~A~~v  136 (286)
T COG1660          60 VRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPL---REIADLV  136 (286)
T ss_pred             cccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHH---HHHhhhE
Confidence            422     22344555665522  6899999999999999844 556666422     233333333333   5568899


Q ss_pred             EccC-CCHHHHHHHHhcCCC
Q psy16778        184 VSVN-EPLEGIVSKSAIMPP  202 (433)
Q Consensus       184 Id~~-~~~ee~~~~i~~~l~  202 (433)
                      ||++ .++.++.+.|...+.
T Consensus       137 IDTs~ls~~~Lr~~i~~~f~  156 (286)
T COG1660         137 IDTSELSVHELRERIRTRFL  156 (286)
T ss_pred             eecccCCHHHHHHHHHHHHc
Confidence            9998 999999999987764

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=98.78  E-value=6.3e-08  Score=89.62  Aligned_cols=65  Identities=17%  Similarity=0.225  Sum_probs=41.6

Q ss_pred             eEEEEEEcCHHHHHHHHHHhhCCCC---CH---HhHHHHHhhccCC-CCCCCCCeEEEccC--CCHHHHHHHHhc
Q psy16778        134 VVFIYLKAEFGVILSRLQKRAEHFM---PA---DLLESQFQTLEEP-DPLVEPDVRTVSVN--EPLEGIVSKSAI  199 (433)
Q Consensus       134 ~~vv~L~~~~e~l~~Rl~~R~~~~~---~~---~~l~~~~~~~~~~-~~~~~~~~~~Id~~--~~~ee~~~~i~~  199 (433)
                      .++|||+++++++.+|+.+|+....   ..   ..+...+..+... +. .....++||.+  .++++++++|..
T Consensus       144 d~~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~-~~~~~i~id~~~~~~~e~i~~~I~~  217 (219)
T cd02030         144 HLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEIS-EHSEVLQYDWTEAGDTEKVVEDIEY  217 (219)
T ss_pred             CEEEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhc-cCCCEEEEeCCChhhHHHHHHHHHc
Confidence            6899999999999999998864211   12   2333333333111 11 22367788877  888888887754

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.77  E-value=1.9e-09  Score=101.20  Aligned_cols=148  Identities=18%  Similarity=0.218  Sum_probs=104.4

Q ss_pred             ccccccceeeeccCCccceeeee--------------ecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----C
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLI--------------MTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----G   63 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g   63 (433)
                      .++++||++.||.++-.+..-+.              .--+++.++++..|++.+|+|.|||||||+.|.+.+..    |
T Consensus         4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G   83 (386)
T COG4175           4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG   83 (386)
T ss_pred             eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence            57899999999876643332211              11356899999999999999999999999999999855    8


Q ss_pred             CeEEeCCCCCcc-----ccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEE
Q psy16778         64 VKFIDGDHLHPQ-----SNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIY  138 (433)
Q Consensus        64 ~~~id~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~  138 (433)
                      -..+++.++..-     ...+.....+.||.....++.+.+++....+..+|.+    -....+...+++...+  +-=|
T Consensus        84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~----~~er~~~a~~~l~~Vg--L~~~  157 (386)
T COG4175          84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP----KAEREERALEALELVG--LEGY  157 (386)
T ss_pred             eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCC----HHHHHHHHHHHHHHcC--chhh
Confidence            889999988532     1122345689999999999999999988877766632    0001122233444332  4445


Q ss_pred             EEcCHHHHHHHHHHhhC
Q psy16778        139 LKAEFGVILSRLQKRAE  155 (433)
Q Consensus       139 L~~~~e~l~~Rl~~R~~  155 (433)
                      -+--+.++...++||.+
T Consensus       158 ~~~yp~eLSGGMqQRVG  174 (386)
T COG4175         158 ADKYPNELSGGMQQRVG  174 (386)
T ss_pred             hhcCcccccchHHHHHH
Confidence            56668889999999863

>COG4639 Predicted kinase [General function prediction only]

Probab=98.76  E-value=8.4e-08  Score=81.37  Aligned_cols=121  Identities=19%  Similarity=0.221  Sum_probs=85.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCc----CChhHHHHHHHHHHHhhhCCCcEE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDE----DRRPWLNNINRIIHQLNVDNLTGV  114 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~V  114 (433)
                      ..++|+|.|||||||+++..  ......++.|++....       |.....+    .....++.+...+...+..|+..|
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~l-------g~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~ti   73 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLL-------GVSASKENSQKNDELVWDILYKQLEQRLRRGKFTI   73 (168)
T ss_pred             eEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHh-------hhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEE
Confidence            57899999999999999843  3477888888875321       1122111    122344566677777888999999


Q ss_pred             EEcCcccHHHHHHHHhcC----C-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhh
Q psy16778        115 LVCSALRRNYRDIIRNNN----R-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQT  169 (433)
Q Consensus       115 i~~~~~~~~~~~~l~~~~----~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~  169 (433)
                      ++.+...++.|..+.+.+    . ...|+++.|.+.+.+|.+.|. +..+.+.+..+.+.
T Consensus        74 idAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~-Rqv~~~VI~r~~r~  132 (168)
T COG4639          74 IDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRE-RQVPEEVIPRMLRE  132 (168)
T ss_pred             EEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccc-hhCCHHHHHHHHHH
Confidence            999987777766555543    2 677999999999999987443 44566677766655

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.75  E-value=4.4e-09  Score=104.13  Aligned_cols=136  Identities=15%  Similarity=0.102  Sum_probs=90.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.|+.          ...+.++++++..|.+++|+|+|||||||+.++|++.+    |...+++..+.....
T Consensus         4 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~   73 (353)
T TIGR03265         4 YLSIDNIRKRFGA----------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP   73 (353)
T ss_pred             EEEEEEEEEEeCC----------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH
Confidence            6899999999985          23566777999999999999999999999999999966    667777766542111


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                       .....++.||+...++.++..+++.......+.+    .........+.+....  +.-+++..+..+....++|-
T Consensus        74 -~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~----~~~~~~~~~~~l~~l~--L~~~~~~~~~~LSgGq~QRv  143 (353)
T TIGR03265        74 -QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMG----RAEVAERVAELLDLVG--LPGSERKYPGQLSGGQQQRV  143 (353)
T ss_pred             -HHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcC--CCchhhCChhhCCHHHHHHH
Confidence             1234688888877777667777765543322210    0001122233343332  33456777777777776664

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.75  E-value=3.8e-09  Score=104.85  Aligned_cols=97  Identities=20%  Similarity=0.144  Sum_probs=83.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++.+++|.|+.          ..+++++++++.+|.+.+|.|-+|+|||||.++|.+.+    |-.++++..+.-...
T Consensus         4 ~l~~~~itK~f~~----------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP   73 (501)
T COG3845           4 ALEMRGITKRFPG----------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSP   73 (501)
T ss_pred             eEEEeccEEEcCC----------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCH
Confidence            7889999999996          67888899999999999999999999999999999988    888999988864322


Q ss_pred             --ccccccCCCCCCcCChhHHHHHHHHHHHhhh
Q psy16778         78 --IDKMSAKQPLNDEDRRPWLNNINRIIHQLNV  108 (433)
Q Consensus        78 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (433)
                        ......|+.+|.....+.++..|+++.....
T Consensus        74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~  106 (501)
T COG3845          74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEP  106 (501)
T ss_pred             HHHHHcCCcEEeeccccccccchhhhhhhcCcc
Confidence              2345568999999999999999999887653

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.75  E-value=5.6e-08  Score=105.36  Aligned_cols=49  Identities=22%  Similarity=0.398  Sum_probs=41.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQ   85 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~   85 (433)
                      .+++|+|.|++||||||+++.||++||+.|++++.+++...+..+..+.
T Consensus        33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~~~l~~~~   81 (863)
T PRK12269         33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVS   81 (863)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHcCC
Confidence            4479999999999999999999999999999999998766555555554

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.74  E-value=4.7e-09  Score=105.97  Aligned_cols=120  Identities=22%  Similarity=0.224  Sum_probs=89.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      .+++.+++|.||.          ..++++++++..+|++++|+|-+|||||||.|+|++-+    |..++++..+.....
T Consensus         8 ll~~~~i~K~Fgg----------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp   77 (500)
T COG1129           8 LLELRGISKSFGG----------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSP   77 (500)
T ss_pred             eeeeecceEEcCC----------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCH
Confidence            4789999999998          66888999999999999999999999999999999988    888888887753322


Q ss_pred             ccc--cccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhc
Q psy16778         78 IDK--MSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNN  131 (433)
Q Consensus        78 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~  131 (433)
                      ...  .....+||+....+.+...+++...........+++........++.+...
T Consensus        78 ~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~l  133 (500)
T COG1129          78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL  133 (500)
T ss_pred             HHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHc
Confidence            222  333567788777777777777765544333234555555555556666654

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=1.3e-09  Score=98.30  Aligned_cols=89  Identities=17%  Similarity=0.085  Sum_probs=63.1

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeE------EeCCCCCc
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKF------IDGDHLHP   74 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~------id~D~~~~   74 (433)
                      |++++.||...-++-         .+-+..++++++.|++.+|+||+|||||||+..|+++-++.+      +++.++..
T Consensus         2 ~~L~I~dLhv~v~~~---------keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~   72 (251)
T COG0396           2 MMLEIKDLHVEVEGK---------KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILE   72 (251)
T ss_pred             ceeEEeeeEEEecCc---------hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccccc
Confidence            378899998888751         135667889999999999999999999999999999875555      44444432


Q ss_pred             c--ccccccccCCCCCCcCChhHHHH
Q psy16778         75 Q--SNIDKMSAKQPLNDEDRRPWLNN   98 (433)
Q Consensus        75 ~--~~~~~~~~~~~~~~~~~~~~~~~   98 (433)
                      -  ....+......||.+.+.+..+.
T Consensus        73 l~~~ERAr~GifLafQ~P~ei~GV~~   98 (251)
T COG0396          73 LSPDERARAGIFLAFQYPVEIPGVTN   98 (251)
T ss_pred             CCHhHHHhcCCEEeecCCccCCCeeH
Confidence            1  11222333466788776665543

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.73  E-value=5.7e-09  Score=103.20  Aligned_cols=136  Identities=17%  Similarity=0.130  Sum_probs=88.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.|+.          -..+.++++++.+|.+++|+|+|||||||+.+.|++.+    |...+++.++.... 
T Consensus         6 ~l~~~~l~~~~~~----------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-   74 (351)
T PRK11432          6 FVVLKNITKRFGS----------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-   74 (351)
T ss_pred             EEEEEeEEEEECC----------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-
Confidence            6889999999985          23567788999999999999999999999999999966    77778776664321 


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      ......++.||+...++.++..+++...+...+.+    .........+.+....  +.-+++..+..+....++|-
T Consensus        75 ~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~----~~~~~~~v~~~l~~~g--l~~~~~r~~~~LSgGq~QRV  145 (351)
T PRK11432         75 IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVP----KEERKQRVKEALELVD--LAGFEDRYVDQISGGQQQRV  145 (351)
T ss_pred             HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCC----HHHHHHHHHHHHHHcC--CchhhcCChhhCCHHHHHHH
Confidence            12234678888876666666666665543322110    0000112223333322  23345666666666666664

>KOG4238|consensus

Probab=98.73  E-value=1.3e-08  Score=96.55  Aligned_cols=157  Identities=20%  Similarity=0.287  Sum_probs=105.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeE--EeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL---GVKF--IDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN  110 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~--id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (433)
                      -+|-.|+++|.||+||||++-.|.+.+   |+++  +|+|+++.     ++-.+..|+.++.++..+++.++.+-...+|
T Consensus        48 frgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirh-----gl~knlgfs~edreenirriaevaklfadag  122 (627)
T KOG4238|consen   48 FRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRH-----GLNKNLGFSPEDREENIRRIAEVAKLFADAG  122 (627)
T ss_pred             ccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhh-----hhhhccCCCchhHHHHHHHHHHHHHHHhcCC
Confidence            356789999999999999999999877   7776  56677653     3344667788888888899988888777777


Q ss_pred             CcEEEEcCcccHHHHHH---HHhcCC--eEEEEEEcCHHHHHHHHHH------hhCCCCCHHhHHHHHhhccCCCCCCCC
Q psy16778        111 LTGVLVCSALRRNYRDI---IRNNNR--VVFIYLKAEFGVILSRLQK------RAEHFMPADLLESQFQTLEEPDPLVEP  179 (433)
Q Consensus       111 ~~~Vi~~~~~~~~~~~~---l~~~~~--~~vv~L~~~~e~l~~Rl~~------R~~~~~~~~~l~~~~~~~~~~~~~~~~  179 (433)
                      -.|+-+.-.....-|..   +.+..+  ++.|+++++.+++..|--+      |.+......-+..   .++++.    .
T Consensus       123 lvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~gftgids---~ye~pe----~  195 (627)
T KOG4238|consen  123 LVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKGFTGIDS---DYEKPE----T  195 (627)
T ss_pred             ceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhcccccccccccc---ccCCCC----C
Confidence            54444433323333333   333333  8899999999999888422      3222222111222   233333    2


Q ss_pred             CeEEEccC-CCHHHHHHHHhcCCCCC
Q psy16778        180 DVRTVSVN-EPLEGIVSKSAIMPPTR  204 (433)
Q Consensus       180 ~~~~Id~~-~~~ee~~~~i~~~l~~~  204 (433)
                      ..++++++ .++.+++.++.+.|..+
T Consensus       196 ~e~vl~t~~~~v~~cvqqvve~lq~~  221 (627)
T KOG4238|consen  196 PERVLKTNLSTVSDCVQQVVELLQEQ  221 (627)
T ss_pred             hhHHhhcCCchHHHHHHHHHHHHHhc
Confidence            66888888 88999999888877654

>PTZ00301 uridine kinase; Provisional

Probab=98.73  E-value=3e-07  Score=84.19  Aligned_cols=155  Identities=19%  Similarity=0.171  Sum_probs=80.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh----C---CeEEeCCCCCccccccc-ccc-CCCCCCcCChhHHHHHHHHHHHhhh
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL----G---VKFIDGDHLHPQSNIDK-MSA-KQPLNDEDRRPWLNNINRIIHQLNV  108 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l----g---~~~id~D~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  108 (433)
                      ..+|+|.|+|||||||+++.|++++    |   +..+..|.++....... ... ...+..+....+ ..+.+.+..+..
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~-~~l~~~l~~L~~   81 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEH-DLLTTHLRELKS   81 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCH-HHHHHHHHHHHc
Confidence            4789999999999999999998776    2   34677888764321100 001 112222111111 112222222111


Q ss_pred             C-----------------------CCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhC--CCCCHHhH
Q psy16778        109 D-----------------------NLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAE--HFMPADLL  163 (433)
Q Consensus       109 ~-----------------------~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~--~~~~~~~l  163 (433)
                      .                       ...+||.-|... .+...+.+.. .+.|||+++.++++.|..+|.-  +-...+..
T Consensus        82 g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~-l~~~~l~~l~-D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v  159 (210)
T PTZ00301         82 GKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILL-FTNAELRNEM-DCLIFVDTPLDICLIRRAKRDMRERGRTFESV  159 (210)
T ss_pred             CCcccCCCcccccCCcCCceEEeCCCcEEEEechhh-hCCHHHHHhC-CEEEEEeCChhHHHHHHHhhhHHhcCCCHHHH
Confidence            0                       123444333322 1222343333 4789999999999998877752  11223333


Q ss_pred             HHHHhh--------ccCCCCCCCCCeEEEccCCCHHHHHHHH
Q psy16778        164 ESQFQT--------LEEPDPLVEPDVRTVSVNEPLEGIVSKS  197 (433)
Q Consensus       164 ~~~~~~--------~~~~~~~~~~~~~~Id~~~~~ee~~~~i  197 (433)
                      ..++..        +-++.  +..++++|......+..+..+
T Consensus       160 ~~~~~~~v~~~~~~~I~p~--k~~ADiIi~~~~~~~~~~~~~  199 (210)
T PTZ00301        160 IEQYEATVRPMYYAYVEPS--KVYADIIVPSWKDNSVAVGVL  199 (210)
T ss_pred             HHHHHHhhcccHHHHcCcc--ccCCcEEEcCCCcchHHHHHH
Confidence            333322        33333  566889888765544444433

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=98.73  E-value=2.5e-07  Score=84.28  Aligned_cols=168  Identities=20%  Similarity=0.232  Sum_probs=95.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccccc---c-C-CCCCCcCCh-----hHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDKMS---A-K-QPLNDEDRR-----PWLNNINRI  102 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~~~---~-~-~~~~~~~~~-----~~~~~~~~~  102 (433)
                      .+|+.|+|-|.=||||||+++.|++.+   |+.++-+-.-........+.   . + ..++.....     .....++..
T Consensus         1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~   80 (208)
T COG0125           1 MKGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEV   80 (208)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999998   55444332221110001100   0 1 111111110     111235666


Q ss_pred             HHHhhhCCCcEEEEcCc------------ccHHHHHHHHhcCC-----eEEEEEEcCHHHHHHHHHHhhCC---CCCHH-
Q psy16778        103 IHQLNVDNLTGVLVCSA------------LRRNYRDIIRNNNR-----VVFIYLKAEFGVILSRLQKRAEH---FMPAD-  161 (433)
Q Consensus       103 ~~~~~~~~~~~Vi~~~~------------~~~~~~~~l~~~~~-----~~vv~L~~~~e~l~~Rl~~R~~~---~~~~~-  161 (433)
                      +...+..|..||.|-..            ....+...+.+...     ++++||++++++..+|+.+|+..   ....+ 
T Consensus        81 i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~  160 (208)
T COG0125          81 IKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKEDD  160 (208)
T ss_pred             HHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHH
Confidence            77777777545544211            22233333322221     79999999999999999999653   11122 


Q ss_pred             -hHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        162 -LLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       162 -~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                       ......+.+.+.........++||++.+++++.+.|.+.+..
T Consensus       161 ~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~  203 (208)
T COG0125         161 EFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKE  203 (208)
T ss_pred             HHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHH
Confidence             233333334333210111468899999999999988776543

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.72  E-value=6.4e-08  Score=88.20  Aligned_cols=120  Identities=17%  Similarity=0.223  Sum_probs=69.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCcccccc-ccccCCCCC--CcCChhHHHHHHHHHHHhhh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNID-KMSAKQPLN--DEDRRPWLNNINRIIHQLNV  108 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  108 (433)
                      ..+|..++|.|+|||||||+++.+...+   ++.+|+.|.+....... .+....+..  ...........+.++.....
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~   91 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIE   91 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4778899999999999999999999986   78899999986432111 100000000  00111111233445666677


Q ss_pred             CCCcEEEEcCcccHHH----HHHHHhcCC-eEEEEEEcCHHHHHHHHHHhh
Q psy16778        109 DNLTGVLVCSALRRNY----RDIIRNNNR-VVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus       109 ~~~~~Vi~~~~~~~~~----~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      ++.++|++++...+..    .+.+++.+- ..++++.++++....|..+|-
T Consensus        92 ~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~  142 (199)
T PF06414_consen   92 NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRY  142 (199)
T ss_dssp             CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHH
T ss_pred             cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHH
Confidence            8889999987754333    345555443 778999999999999998884

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.71  E-value=5.3e-09  Score=103.65  Aligned_cols=136  Identities=13%  Similarity=0.131  Sum_probs=87.4

Q ss_pred             ccccccceeee-ccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778          2 AVSNFGNWRYW-GMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS   76 (433)
Q Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~   76 (433)
                      +++++++++.| +.          ...+.+.++++.+|.+++|+|+|||||||+.++|++.+    |..++++.++....
T Consensus         3 ~l~i~~l~~~~~~~----------~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~   72 (356)
T PRK11650          3 GLKLQAVRKSYDGK----------TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE   72 (356)
T ss_pred             EEEEEeEEEEeCCC----------CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC
Confidence            58899999999 54          23567788999999999999999999999999999965    77777776654321


Q ss_pred             cccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         77 NIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      . .....++.||+...++.++..+++.......+..    .........+.+...+  +--+++..+..+....++|-
T Consensus        73 ~-~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~----~~~~~~~~~~~l~~~g--L~~~~~~~~~~LSgGq~QRv  143 (356)
T PRK11650         73 P-ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMP----KAEIEERVAEAARILE--LEPLLDRKPRELSGGQRQRV  143 (356)
T ss_pred             H-HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCC----HHHHHHHHHHHHHHcC--ChhHhhCChhhCCHHHHHHH
Confidence            1 1234678888876666666666665443221100    0000112233344332  23345666666666666664

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.71  E-value=7.3e-09  Score=103.33  Aligned_cols=136  Identities=16%  Similarity=0.126  Sum_probs=90.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      +++++++++.|+.          ...++++++++.+|.+++|+|+|||||||+.+.|++..    |..++++..+.....
T Consensus        19 ~l~l~~v~~~~~~----------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~   88 (377)
T PRK11607         19 LLEIRNLTKSFDG----------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP   88 (377)
T ss_pred             eEEEEeEEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence            5789999999975          23566777999999999999999999999999999865    667777766532111


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                       .....++.||+...++.++..+++...+...+..    .........+.+....  +.-+++..+..+....++|-
T Consensus        89 -~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~----~~~~~~~v~~~l~~l~--L~~~~~~~~~~LSgGq~QRV  158 (377)
T PRK11607         89 -YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP----KAEIASRVNEMLGLVH--MQEFAKRKPHQLSGGQRQRV  158 (377)
T ss_pred             -HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHcC--CchhhcCChhhCCHHHHHHH
Confidence             2234688898877777777777765543322210    0001112223333332  33456777777777776664

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.70  E-value=7.2e-09  Score=103.25  Aligned_cols=136  Identities=13%  Similarity=0.138  Sum_probs=88.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      +++++++++.|+.          -..+.++++++.+|.+++|+|++||||||+.++|++.+    |...+++.++.....
T Consensus        14 ~L~l~~l~~~~~~----------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~   83 (375)
T PRK09452         14 LVELRGISKSFDG----------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA   83 (375)
T ss_pred             eEEEEEEEEEECC----------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence            5789999999975          23566778999999999999999999999999999966    667787776642111


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                       .....++.||+...++.++..+++...+...+.+    .........+.+....  +.-+++..+..+....++|-
T Consensus        84 -~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~----~~~~~~~~~~~l~~~~--l~~~~~~~p~~LSgGq~QRV  153 (375)
T PRK09452         84 -ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTP----AAEITPRVMEALRMVQ--LEEFAQRKPHQLSGGQQQRV  153 (375)
T ss_pred             -HHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCC----HHHHHHHHHHHHHHcC--CchhhhCChhhCCHHHHHHH
Confidence             1234688888876666666777765543322210    0000112223333322  33456666777777766664

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.68  E-value=1.3e-08  Score=87.38  Aligned_cols=47  Identities=26%  Similarity=0.336  Sum_probs=37.7

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778         26 TTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus        26 ~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      .-+++.|++..+|..|+|+|||||||||+.|.++...    |..++.+.++
T Consensus        17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~v   67 (223)
T COG4619          17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV   67 (223)
T ss_pred             eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccc
Confidence            3567888999999999999999999999999999743    4444444443

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=98.66  E-value=2.4e-08  Score=97.87  Aligned_cols=83  Identities=43%  Similarity=0.547  Sum_probs=74.4

Q ss_pred             HHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcE
Q psy16778        322 LVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKA  401 (433)
Q Consensus       322 ~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~a  401 (433)
                      -.+.|+++|...+.+|+                   +++++|++....+     ||+|+..++..+.++++||.++||++
T Consensus        86 ~a~~A~~a~~~~i~s~~-------------------gs~~ie~~~~~~~-----~q~y~~~~R~~~~~~~~~a~n~G~~~  141 (360)
T COG1304          86 NAKLAAAAGEPFILSTV-------------------GSQRIEEVAAAPP-----FQLYFSKDREFAPNLVDRAANAGAKQ  141 (360)
T ss_pred             HHHHHHHcCCCeeeecc-------------------ccCcHHHhhcCcc-----hhhhhHHHHHhhHHHHHHHHhcCCcc
Confidence            34556678999999999                   8899999987644     99999999999999999999999999


Q ss_pred             EEEecCCCCCCCchhhhhcCCCCCCCC
Q psy16778        402 LVLTVDTNVFGTRYADIRNKFNMPSHL  428 (433)
Q Consensus       402 ivlTvD~~~~g~r~~~~r~~~~~~~~~  428 (433)
                      +++|||+|+.|+|++|.++++..|+..
T Consensus       142 lv~t~d~~~~~~r~~d~~~~i~a~~~~  168 (360)
T COG1304         142 LVLTVDSPVGGERERDAVNGISAPALA  168 (360)
T ss_pred             eeeccCccchHHHHHHHHhccCCCccc
Confidence            999999999999999999999888543

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=98.66  E-value=1.4e-07  Score=84.40  Aligned_cols=31  Identities=45%  Similarity=0.699  Sum_probs=27.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeE
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKF   66 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~   66 (433)
                      +..+.|+|-|+.|+||||+++.||+++|..+
T Consensus         2 ~~~~~IvI~G~IG~GKSTLa~~La~~l~~~~   32 (216)
T COG1428           2 NVAMVIVIEGMIGAGKSTLAQALAEHLGFKV   32 (216)
T ss_pred             CcccEEEEecccccCHHHHHHHHHHHhCCce
Confidence            3468999999999999999999999999654

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=98.66  E-value=1e-07  Score=86.35  Aligned_cols=28  Identities=43%  Similarity=0.705  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFI   67 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~i   67 (433)
                      .|+|.|+.||||||+++.|++.+|+.++
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~   28 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVV   28 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCccc
Confidence            4899999999999999999998887655

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.66  E-value=1.2e-08  Score=99.27  Aligned_cols=92  Identities=17%  Similarity=0.221  Sum_probs=63.6

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS   76 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~   76 (433)
                      |++++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++....
T Consensus         3 ~~i~~~~l~~~~~~----------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~   72 (303)
T TIGR01288         3 VAIDLVGVSKSYGD----------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA   72 (303)
T ss_pred             cEEEEEeEEEEeCC----------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH
Confidence            57899999999975          33677888999999999999999999999999999865    55666655442211


Q ss_pred             cccccccCCCCCCcCChhHHHHHHHH
Q psy16778         77 NIDKMSAKQPLNDEDRRPWLNNINRI  102 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (433)
                      .......++.+|+......++..+++
T Consensus        73 ~~~~~~i~~v~q~~~~~~~~tv~e~l   98 (303)
T TIGR01288        73 RLARVAIGVVPQFDNLDPEFTVRENL   98 (303)
T ss_pred             HHHhhcEEEEeccccCCcCCcHHHHH
Confidence            11122346666664433333444443

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.66  E-value=1.9e-08  Score=93.12  Aligned_cols=90  Identities=17%  Similarity=0.162  Sum_probs=60.4

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI   78 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~   78 (433)
                      ++++++++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..+......
T Consensus         1 i~~~~~~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~   70 (220)
T cd03265           1 IEVENLVKKYGD----------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPRE   70 (220)
T ss_pred             CEEEEEEEEECC----------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHH
Confidence            468899999975          23677888999999999999999999999999999865    5556665443211101


Q ss_pred             cccccCCCCCCcCChhHHHHHHHH
Q psy16778         79 DKMSAKQPLNDEDRRPWLNNINRI  102 (433)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~  102 (433)
                      .....++.+++..........+++
T Consensus        71 ~~~~i~~~~q~~~~~~~~tv~~~l   94 (220)
T cd03265          71 VRRRIGIVFQDLSVDDELTGWENL   94 (220)
T ss_pred             HhhcEEEecCCccccccCcHHHHH
Confidence            112345666664433333333333

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.65  E-value=1.7e-08  Score=99.41  Aligned_cols=141  Identities=13%  Similarity=0.105  Sum_probs=87.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      |+++++|++.|+...      -....+.++++++.+|.+++|+|+|||||||+.+.|+..+    |...+++.++.....
T Consensus         1 mI~~~~lsk~y~~~~------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~   74 (343)
T TIGR02314         1 MIKLSNITKVFHQGT------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSN   74 (343)
T ss_pred             CEEEEEEEEEECCCC------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence            478999999996311      0124678888999999999999999999999999999966    777777766542110


Q ss_pred             ----ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778         78 ----IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR  153 (433)
Q Consensus        78 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R  153 (433)
                          ......++.+|........+..+++.......+..    .........+.+...+  +.-+++..+..+....++|
T Consensus        75 ~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~----~~~~~~~v~e~l~~vg--L~~~~~~~~~~LSgGqkQR  148 (343)
T TIGR02314        75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP----KDEIKRKVTELLALVG--LGDKHDSYPSNLSGGQKQR  148 (343)
T ss_pred             HHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHcC--CchhhhCChhhCCHHHHHH
Confidence                01224578888765555455566655443222210    0001112234444432  2334566677777776666


Q ss_pred             h
Q psy16778        154 A  154 (433)
Q Consensus       154 ~  154 (433)
                      -
T Consensus       149 V  149 (343)
T TIGR02314       149 V  149 (343)
T ss_pred             H
Confidence            4

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PLN02348 phosphoribulokinase

Probab=98.65  E-value=5e-07  Score=89.06  Aligned_cols=149  Identities=16%  Similarity=0.133  Sum_probs=77.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCC--------------------eEEeCCCCCccccccccccCCCCCCcCChhH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGV--------------------KFIDGDHLHPQSNIDKMSAKQPLNDEDRRPW   95 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~--------------------~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~   95 (433)
                      +++.+|+|.|.|||||||+++.|++.+|.                    .+|..|+++..........+..+-++.. ..
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a-~d  125 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRA-NN  125 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCccc-cc
Confidence            45679999999999999999999999852                    4788888863211111112222222211 12


Q ss_pred             HHHHHHHHHHhhhC----------------------CCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778         96 LNNINRIIHQLNVD----------------------NLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR  153 (433)
Q Consensus        96 ~~~~~~~~~~~~~~----------------------~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R  153 (433)
                      ++.+.+.+..+...                      ...+||.-|- ...+.+.+.+.. .+.|||+++.++++.|..+|
T Consensus       126 fDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~I~p~~VVIVEGl-h~L~~e~lr~l~-D~~IyVd~~~dvrl~RRI~R  203 (395)
T PLN02348        126 FDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPELIEPPKILVIEGL-HPMYDERVRDLL-DFSIYLDISDDVKFAWKIQR  203 (395)
T ss_pred             HHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEEcCCCcEEEEech-hhccCccccccC-cEEEEEECCHHHHHHHHHHh
Confidence            33344444433321                      1123333332 111122232322 58999999999986665544


Q ss_pred             hC--CCCCHHhHHHHHhhccCC-----CCCCCCCeEEEccC
Q psy16778        154 AE--HFMPADLLESQFQTLEEP-----DPLVEPDVRTVSVN  187 (433)
Q Consensus       154 ~~--~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~Id~~  187 (433)
                      .-  +-...+.....+..+.+.     ...+..++++|+.-
T Consensus       204 D~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~  244 (395)
T PLN02348        204 DMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVL  244 (395)
T ss_pred             hHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEec
Confidence            31  112333333344333221     11255677887764

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.65  E-value=1.3e-08  Score=101.43  Aligned_cols=92  Identities=17%  Similarity=0.158  Sum_probs=66.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      .++++++++.|+.          ...++++++++.+|.+++|+|++||||||+.++|++.+    |...+++.++.....
T Consensus         3 ~l~i~~l~~~~~~----------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~   72 (369)
T PRK11000          3 SVTLRNVTKAYGD----------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP   72 (369)
T ss_pred             EEEEEEEEEEeCC----------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH
Confidence            5899999999975          23677888999999999999999999999999999965    666776655432111


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHH
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIH  104 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (433)
                       .....++.+|+....+.++..+++..
T Consensus        73 -~~~~i~~v~Q~~~l~~~~tv~eni~~   98 (369)
T PRK11000         73 -AERGVGMVFQSYALYPHLSVAENMSF   98 (369)
T ss_pred             -hHCCEEEEeCCcccCCCCCHHHHHHh
Confidence             12235777777555444455555543

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.64  E-value=1.4e-08  Score=85.45  Aligned_cols=90  Identities=16%  Similarity=0.001  Sum_probs=62.8

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-------CCeEEeCCCCC
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-------GVKFIDGDHLH   73 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-------g~~~id~D~~~   73 (433)
                      |++.+.+|+...+++|+++.          +++++.+|+++-|+|||||||||+...+.+.+       |...++..++.
T Consensus         1 ~~l~l~nvsl~l~g~cLLa~----------~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~   70 (213)
T COG4136           1 GMLCLKNVSLRLPGSCLLAN----------VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD   70 (213)
T ss_pred             CceeeeeeeecCCCceEEEe----------eeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecc
Confidence            57889999999999886444          44569999999999999999999999999988       33344443332


Q ss_pred             ccccccccccCCCCCCcCChhHHHHHHH
Q psy16778         74 PQSNIDKMSAKQPLNDEDRRPWLNNINR  101 (433)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (433)
                      .-. ......|+.||++-.++.+..-++
T Consensus        71 ~lP-a~qRq~GiLFQD~lLFphlsVg~N   97 (213)
T COG4136          71 MLP-AAQRQIGILFQDALLFPHLSVGQN   97 (213)
T ss_pred             ccc-hhhhheeeeecccccccccccccc
Confidence            111 122345888888665555544333

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.64  E-value=1.3e-08  Score=98.96  Aligned_cols=91  Identities=13%  Similarity=0.082  Sum_probs=66.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.|+.          ...++++++++.+|.+++|+|++||||||+.++|++.+    |...+++.++.....
T Consensus         7 ~i~i~~l~k~~~~----------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~   76 (306)
T PRK13537          7 PIDFRNVEKRYGD----------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRAR   76 (306)
T ss_pred             eEEEEeEEEEECC----------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchH
Confidence            6889999999985          34778888999999999999999999999999999976    666777665543211


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHH
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRI  102 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~  102 (433)
                      ......++.+++......++..+++
T Consensus        77 ~~~~~ig~v~q~~~~~~~~tv~e~l  101 (306)
T PRK13537         77 HARQRVGVVPQFDNLDPDFTVRENL  101 (306)
T ss_pred             HHHhcEEEEeccCcCCCCCcHHHHH
Confidence            1223457777765544444444443

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.64  E-value=3e-08  Score=87.68  Aligned_cols=77  Identities=19%  Similarity=0.194  Sum_probs=64.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      |+.+.+++|+|+.  +       .+++.+++++...|.+.+|.|++||||||+.|+|+..+    |...+++=+..+.+.
T Consensus         1 Ml~v~~l~K~y~~--~-------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~   71 (245)
T COG4555           1 MLEVTDLTKSYGS--K-------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS   71 (245)
T ss_pred             CeeeeehhhhccC--H-------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChH
Confidence            5788999999986  1       34788999999999999999999999999999999987    888888888776655


Q ss_pred             ccccccCCCC
Q psy16778         78 IDKMSAKQPL   87 (433)
Q Consensus        78 ~~~~~~~~~~   87 (433)
                      ......|..+
T Consensus        72 ~vrr~IGVl~   81 (245)
T COG4555          72 FVRRKIGVLF   81 (245)
T ss_pred             HHhhhcceec
Confidence            5555567666

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.64  E-value=2.4e-08  Score=90.37  Aligned_cols=96  Identities=14%  Similarity=0.147  Sum_probs=73.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|+.+||.          ...+.+++++.++|++++|+|++|+||||+.+.++...    |...+++.++.....
T Consensus         3 mL~v~~l~~~YG~----------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~   72 (237)
T COG0410           3 MLEVENLSAGYGK----------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPP   72 (237)
T ss_pred             ceeEEeEeecccc----------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCH
Confidence            7899999999998          56777888999999999999999999999999999866    777888888865433


Q ss_pred             ccccccC--CCCCCcCChhHHHHHHHHHHHhh
Q psy16778         78 IDKMSAK--QPLNDEDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        78 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  107 (433)
                      -...+.|  ++++...-++.++..++......
T Consensus        73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~  104 (237)
T COG0410          73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAY  104 (237)
T ss_pred             HHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence            2333344  44444455566677777765543

>PLN02165 adenylate isopentenyltransferase

Probab=98.64  E-value=3.9e-07  Score=88.19  Aligned_cols=117  Identities=22%  Similarity=0.331  Sum_probs=71.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC--ccccc------cccccCCC-----CCCcC--C---hhHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH--PQSNI------DKMSAKQP-----LNDED--R---RPWLN   97 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~--~~~~~------~~~~~~~~-----~~~~~--~---~~~~~   97 (433)
                      .++.+|+|+|++||||||++..|++.++..+++.|.+.  ....+      .....+.+     +-.+.  .   ..|.+
T Consensus        41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~~  120 (334)
T PLN02165         41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFRS  120 (334)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHHH
Confidence            46679999999999999999999999999999999772  11000      00011222     11111  1   22333


Q ss_pred             HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhc---------------------CCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         98 NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNN---------------------NRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        98 ~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~---------------------~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      .....+......+...|+.+|.  ..|.+.|...                     .+..+++|+.+.+++.+|+.+|-
T Consensus       121 ~a~~~I~~i~~~~~~PI~vGGT--glYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rv  196 (334)
T PLN02165        121 LASLSISEITSRQKLPIVAGGS--NSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRV  196 (334)
T ss_pred             HHHHHHHHHHHCCCcEEEECCh--HHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHH
Confidence            4445555655566555554432  2222222220                     11467899999999999999996

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.64  E-value=9.4e-08  Score=85.89  Aligned_cols=155  Identities=16%  Similarity=0.188  Sum_probs=82.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCCCcCChhHHH-----------------
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN-----------------   97 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------   97 (433)
                      +++.|+|+||+|||||||++.|.+.+.  +.+.-....+......  ..|..+..-....+.+                 
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E--~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~   78 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGE--VDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNY   78 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS---TTTSEEE--HHHHHHHHHTTHEEEEEEETTEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccc--cCCcceEEEeechhhhhhccccEEEEeeecchh
Confidence            467899999999999999999998774  2222222222211100  1122211111111111                 


Q ss_pred             --HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcC-HHHHHHHHHHhhCCCCCHHhHHHHHhhccCC
Q psy16778         98 --NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAE-FGVILSRLQKRAEHFMPADLLESQFQTLEEP  173 (433)
Q Consensus        98 --~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~-~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~  173 (433)
                        .....+.....+|..+|+++..   .....|++... .++|||..+ .+.+.+|+.+|+.  ...+.+..+....+..
T Consensus        79 YGt~~~~i~~~~~~gk~~il~~~~---~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~--~~~~~i~~r~~~~~~~  153 (183)
T PF00625_consen   79 YGTSKSAIDKVLEEGKHCILDVDP---EGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGD--ESEEEIEERLERAEKE  153 (183)
T ss_dssp             EEEEHHHHHHHHHTTTEEEEEETH---HHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTH--CHHHHHHHHHHHHHHH
T ss_pred             hhhccchhhHhhhcCCcEEEEccH---HHHHHHHhcccCceEEEEEccchHHHHHHHhcccc--ccHHHHHHHHHHHHHH
Confidence              1133355666778888888773   33344555433 789999765 7888888877653  1122233222221111


Q ss_pred             C-CCCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778        174 D-PLVEPDVRTVSVNEPLEGIVSKSAIM  200 (433)
Q Consensus       174 ~-~~~~~~~~~Id~~~~~ee~~~~i~~~  200 (433)
                      . .+.+ .+.+|.++ +.++...++...
T Consensus       154 ~~~~~~-fd~vi~n~-~le~~~~~l~~i  179 (183)
T PF00625_consen  154 FEHYNE-FDYVIVND-DLEEAVKELKEI  179 (183)
T ss_dssp             HGGGGG-SSEEEECS-SHHHHHHHHHHH
T ss_pred             HhHhhc-CCEEEECc-CHHHHHHHHHHH
Confidence            1 0011 44666664 788888877654

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.63  E-value=1.9e-08  Score=94.44  Aligned_cols=62  Identities=21%  Similarity=0.260  Sum_probs=52.1

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      |.+++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++
T Consensus         1 ~~l~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   66 (239)
T cd03296           1 MSIEVRNVSKRFGD----------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA   66 (239)
T ss_pred             CEEEEEeEEEEECC----------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence            67899999999975          23677888999999999999999999999999999965    5556665443

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.63  E-value=1.4e-08  Score=98.63  Aligned_cols=91  Identities=14%  Similarity=0.078  Sum_probs=64.7

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS   76 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~   76 (433)
                      |.++++++++.|+.          ...+++.++++.+|.+++|+|++||||||+.++|++.+    |...+++.++....
T Consensus         1 ~~l~~~~l~~~~~~----------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~   70 (301)
T TIGR03522         1 MSIRVSSLTKLYGT----------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP   70 (301)
T ss_pred             CEEEEEEEEEEECC----------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh
Confidence            77899999999975          33677888999999999999999999999999999865    66667665543211


Q ss_pred             cccccccCCCCCCcCChhHHHHHHH
Q psy16778         77 NIDKMSAKQPLNDEDRRPWLNNINR  101 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~  101 (433)
                      .......++.++.......+...++
T Consensus        71 ~~~~~~ig~~~q~~~l~~~~tv~e~   95 (301)
T TIGR03522        71 KEVQRNIGYLPEHNPLYLDMYVREY   95 (301)
T ss_pred             HHHHhceEEecCCCCCCCCCcHHHH
Confidence            1112235666766544333344333

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK07667 uridine kinase; Provisional

Probab=98.63  E-value=3.9e-07  Score=82.57  Aligned_cols=39  Identities=23%  Similarity=0.259  Sum_probs=33.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCcc
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQ   75 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~   75 (433)
                      +..+|+|.|++||||||+++.|++.+     +..+++.|++...
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~   59 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE   59 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence            34799999999999999999999987     3558999997643

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.62  E-value=2.3e-08  Score=96.53  Aligned_cols=91  Identities=20%  Similarity=0.180  Sum_probs=68.7

Q ss_pred             ccccccceeeec-cCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778          2 AVSNFGNWRYWG-MWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS   76 (433)
Q Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~   76 (433)
                      .+++.+|++.|+ .          ...++++++++.+|.+++|+|++||||||+.++|++..    |...+++.+.....
T Consensus         4 ~i~~~~l~k~~~~~----------~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~   73 (293)
T COG1131           4 VIEVRNLTKKYGGD----------KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEP   73 (293)
T ss_pred             eeeecceEEEeCCC----------CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCH
Confidence            567799999999 4          45888999999999999999999999999999999976    66677775554321


Q ss_pred             cccccccCCCCCCcCChhHHHHHHHH
Q psy16778         77 NIDKMSAKQPLNDEDRRPWLNNINRI  102 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (433)
                      .......|+.++.+...+.++..+.+
T Consensus        74 ~~~~~~igy~~~~~~~~~~lT~~e~l   99 (293)
T COG1131          74 AKVRRRIGYVPQEPSLYPELTVRENL   99 (293)
T ss_pred             HHHHhheEEEccCCCCCccccHHHHH
Confidence            11223457888877666666555443

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.62  E-value=2.8e-08  Score=91.50  Aligned_cols=60  Identities=25%  Similarity=0.315  Sum_probs=49.8

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 l~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~   64 (213)
T cd03259           1 LELKGLSKTYGS----------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV   64 (213)
T ss_pred             CeeeeeEEEeCC----------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence            468899999974          23678888999999999999999999999999999865    5566666544

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.61  E-value=2.3e-08  Score=91.12  Aligned_cols=61  Identities=15%  Similarity=0.090  Sum_probs=51.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++++|.+++|+|++||||||+.+.|++.+    |..++++.++
T Consensus         1 ml~~~~l~~~~~~----------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~   65 (200)
T PRK13540          1 MLDVIELDFDYHD----------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI   65 (200)
T ss_pred             CEEEEEEEEEeCC----------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcc
Confidence            4789999999975          23677888999999999999999999999999999975    6667776655

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.61  E-value=1.7e-07  Score=82.54  Aligned_cols=60  Identities=23%  Similarity=0.268  Sum_probs=48.9

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+..          ..+.+.++++.+|.+++|+|++||||||+.+.|++.+    |...++..++
T Consensus         1 l~~~~l~~~~~~~----------~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~   64 (163)
T cd03216           1 LELRGITKRFGGV----------KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV   64 (163)
T ss_pred             CEEEEEEEEECCe----------EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence            4688999999752          3567788999999999999999999999999999865    5556655444

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.61  E-value=2.4e-08  Score=92.16  Aligned_cols=63  Identities=16%  Similarity=0.054  Sum_probs=50.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+...        ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 ~l~~~~l~~~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   67 (216)
T TIGR00960         1 MIRFEQVSKAYPGGH--------QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDL   67 (216)
T ss_pred             CeEEEEEEEEecCCC--------eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeh
Confidence            478999999996421        12567788999999999999999999999999999965    5566665443

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.61  E-value=1.7e-08  Score=99.40  Aligned_cols=90  Identities=16%  Similarity=0.122  Sum_probs=64.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.|+.          ...++++++++.+|.+++|+|++||||||+.++|++.+    |...+++.++.....
T Consensus        41 ~i~i~nl~k~y~~----------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~  110 (340)
T PRK13536         41 AIDLAGVSKSYGD----------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR  110 (340)
T ss_pred             eEEEEEEEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchH
Confidence            5889999999986          34778888999999999999999999999999999976    666777665532211


Q ss_pred             ccccccCCCCCCcCChhHHHHHHH
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINR  101 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~  101 (433)
                      ......++.+++......++..++
T Consensus       111 ~~~~~ig~v~q~~~~~~~~tv~e~  134 (340)
T PRK13536        111 LARARIGVVPQFDNLDLEFTVREN  134 (340)
T ss_pred             HHhccEEEEeCCccCCCCCcHHHH
Confidence            112245666766444333344333

>PRK13974 thymidylate kinase; Provisional

Probab=98.60  E-value=1.1e-06  Score=80.95  Aligned_cols=163  Identities=15%  Similarity=0.135  Sum_probs=82.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC--------eEEeCCCCCcccc---ccc-cc--cCC-CCCCcCCh-----hHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGV--------KFIDGDHLHPQSN---IDK-MS--AKQ-PLNDEDRR-----PWL   96 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~--------~~id~D~~~~~~~---~~~-~~--~~~-~~~~~~~~-----~~~   96 (433)
                      .|++|+|.|+.||||||+++.|++.+..        .++.+..-.....   +.. +.  .+. ........     ...
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~   81 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA   81 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999998831        1111111000000   000 00  000 00000000     001


Q ss_pred             HHHHHHHHHhhhCCCcEEE-EcC----------c--ccHHHHHHHHh---c-CC-eEEEEEEcCHHHHHHHHHHhhCCCC
Q psy16778         97 NNINRIIHQLNVDNLTGVL-VCS----------A--LRRNYRDIIRN---N-NR-VVFIYLKAEFGVILSRLQKRAEHFM  158 (433)
Q Consensus        97 ~~~~~~~~~~~~~~~~~Vi-~~~----------~--~~~~~~~~l~~---~-~~-~~vv~L~~~~e~l~~Rl~~R~~~~~  158 (433)
                      ..+...+...+..|. +|| |-.          +  ....+...+..   . .. ..++||++|++++.+|+..|.....
T Consensus        82 ~~~~~~i~~~l~~g~-~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD~~  160 (212)
T PRK13974         82 QHVSKIIRPALENGD-WVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPDRI  160 (212)
T ss_pred             HHHHHHHHHHHHCCC-EEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccCch
Confidence            122334555566664 444 311          1  12223233322   1 12 7899999999999999988753211


Q ss_pred             C---HHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        159 P---ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       159 ~---~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      .   ..........++...  .+....+||.+.+++++.++|.+.+.
T Consensus       161 e~~~~~y~~~v~~~y~~y~--~~~~~~~Ida~~~~eeV~~~I~~~l~  205 (212)
T PRK13974        161 EAEGIEFLERVAEGFALIA--EERNWKVISADQSIETISNEIKETLL  205 (212)
T ss_pred             hhhhHHHHHHHHHHHHHHH--hcCCEEEEeCCCCHHHHHHHHHHHHH
Confidence            1   111111122221111  22245678888999999988876653

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.60  E-value=8.4e-07  Score=80.47  Aligned_cols=147  Identities=20%  Similarity=0.221  Sum_probs=80.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCe---EEeCCCCCcccccccc--ccCCCCCCcCChhHHHHHHHHHHHhhh--
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVK---FIDGDHLHPQSNIDKM--SAKQPLNDEDRRPWLNNINRIIHQLNV--  108 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~---~id~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--  108 (433)
                      .+..+|+|.|+|||||||+++.|...++..   .|..|+++........  .....+..+..+.+ +.+.+.+..+..  
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~-dLl~~~L~~L~~g~   84 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDL-DLLIEHLKDLKQGK   84 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcH-HHHHHHHHHHHcCC
Confidence            345799999999999999999999999744   7888988753211111  11222222221111 111122221111  


Q ss_pred             ---------------------CCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCC--CCCHHhHHH
Q psy16778        109 ---------------------DNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH--FMPADLLES  165 (433)
Q Consensus       109 ---------------------~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~--~~~~~~l~~  165 (433)
                                           ....+||..|.. .-+.+.+++.. .+.||++++.+++..|-..|.-.  -...+..-.
T Consensus        85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~-~l~d~~lr~~~-d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~  162 (218)
T COG0572          85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGIL-LLYDERLRDLM-DLKIFVDTDADVRLIRRIKRDVQERGRDLESVIE  162 (218)
T ss_pred             cccccccchhcccccCCccccCCCcEEEEeccc-ccccHHHHhhc-CEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHH
Confidence                                 123455555542 22223444443 48999999999988876555311  112222222


Q ss_pred             HH--------hhccCCCCCCCCCeEEEccC
Q psy16778        166 QF--------QTLEEPDPLVEPDVRTVSVN  187 (433)
Q Consensus       166 ~~--------~~~~~~~~~~~~~~~~Id~~  187 (433)
                      ++        ..+-++.  ++.++++|...
T Consensus       163 qy~~~vkp~~~~fIept--k~~ADiiip~~  190 (218)
T COG0572         163 QYVKTVRPMYEQFIEPT--KKYADIIIPSG  190 (218)
T ss_pred             HHHHhhChhhhhccCcc--cccceEEeecC
Confidence            22        2222333  56688888875

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.60  E-value=2.7e-08  Score=90.99  Aligned_cols=61  Identities=16%  Similarity=0.057  Sum_probs=51.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++++|+.          -..+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~   65 (204)
T PRK13538          1 MLEARNLACERDE----------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI   65 (204)
T ss_pred             CeEEEEEEEEECC----------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc
Confidence            4789999999975          23677888999999999999999999999999999975    6666666544

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.60  E-value=1.9e-08  Score=84.34  Aligned_cols=109  Identities=23%  Similarity=0.196  Sum_probs=54.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccc-cccccccCCCCCCcCChhHHHHHHHHHHHh---hhCCCcEEEE
Q psy16778         41 FVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS-NIDKMSAKQPLNDEDRRPWLNNINRIIHQL---NVDNLTGVLV  116 (433)
Q Consensus        41 I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Vi~  116 (433)
                      |+|+|++||||||+++.|+++++..+.+........ ..... ....-...........+.+.+...   ...+..+||+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid   79 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLGDIIRDIAPEEDIVDSIDDN-PDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNIIID   79 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCHHHHHHHHHTTSHSSHCCH-HCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEEE
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCcHHHHHHHhcCCccccccc-chhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEEEe
Confidence            789999999999999999999732221111100000 00000 000001111122222333333332   3445677777


Q ss_pred             cCcccHHHHHHHHhcCCeEE-EEEEcCHHHHHHHHHHhhC
Q psy16778        117 CSALRRNYRDIIRNNNRVVF-IYLKAEFGVILSRLQKRAE  155 (433)
Q Consensus       117 ~~~~~~~~~~~l~~~~~~~v-v~L~~~~e~l~~Rl~~R~~  155 (433)
                      ........ ..+.    ... |||+||++++.+|+..|..
T Consensus        80 ~~~~~~~~-~~~~----~~~~i~L~~~~e~~~~R~~~R~~  114 (129)
T PF13238_consen   80 GILSNLEL-ERLF----DIKFIFLDCSPEELRKRLKKRGR  114 (129)
T ss_dssp             ESSEEECE-TTEE----EESSEEEE--HHHHHHHHHCTTT
T ss_pred             cccchhcc-cccc----eeeEEEEECCHHHHHHHHHhCCC
Confidence            65422110 0000    223 9999999999999999874

...

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.59  E-value=3.2e-08  Score=90.79  Aligned_cols=61  Identities=25%  Similarity=0.183  Sum_probs=52.0

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      |+++++++++.|+.          ...+.+.++++++|.+++|+|++||||||+.+.|++.+    |...+++.+
T Consensus         1 m~l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~   65 (207)
T PRK13539          1 MMLEGEDLACVRGG----------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD   65 (207)
T ss_pred             CEEEEEeEEEEECC----------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe
Confidence            78999999999975          23577888999999999999999999999999999965    666666544

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.59  E-value=2.9e-08  Score=92.90  Aligned_cols=90  Identities=21%  Similarity=0.190  Sum_probs=61.6

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc--
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS--   76 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~--   76 (433)
                      ++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+    |...+++.++....  
T Consensus         1 l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~   70 (235)
T cd03261           1 IELRGLTKSFGG----------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEA   70 (235)
T ss_pred             CeEEEEEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChh
Confidence            468899999975          23677888999999999999999999999999999866    55666665443211  


Q ss_pred             --cccccccCCCCCCcCChhHHHHHHHH
Q psy16778         77 --NIDKMSAKQPLNDEDRRPWLNNINRI  102 (433)
Q Consensus        77 --~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (433)
                        .......++.++.......++..+++
T Consensus        71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l   98 (235)
T cd03261          71 ELYRLRRRMGMLFQSGALFDSLTVFENV   98 (235)
T ss_pred             hHHHHhcceEEEccCcccCCCCcHHHHH
Confidence              01112346666665433334444444

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.58  E-value=2.6e-08  Score=92.06  Aligned_cols=84  Identities=17%  Similarity=0.107  Sum_probs=57.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      +++++++++.|+....      ....+.+.++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++.....
T Consensus         1 ~l~~~~v~~~~~~~~~------~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~   74 (218)
T cd03266           1 MITADALTKRFRDVKK------TVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA   74 (218)
T ss_pred             CeEEEEEEEecCCCCc------cceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHH
Confidence            4788999999975210      013677888999999999999999999999999999865    556665544321111


Q ss_pred             ccccccCCCCCCcC
Q psy16778         78 IDKMSAKQPLNDED   91 (433)
Q Consensus        78 ~~~~~~~~~~~~~~   91 (433)
                      ......++.++...
T Consensus        75 ~~~~~i~~~~q~~~   88 (218)
T cd03266          75 EARRRLGFVSDSTG   88 (218)
T ss_pred             HHHhhEEEecCCcc
Confidence            11123456666543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.58  E-value=6.2e-08  Score=90.66  Aligned_cols=60  Identities=22%  Similarity=0.329  Sum_probs=49.5

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..+
T Consensus         1 l~~~~l~~~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   64 (236)
T cd03219           1 LEVRGLTKRFGG----------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDI   64 (236)
T ss_pred             CeeeeeEEEECC----------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEEC
Confidence            467899999974          23677888999999999999999999999999999865    6666766544

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.58  E-value=2.9e-08  Score=85.55  Aligned_cols=140  Identities=16%  Similarity=0.075  Sum_probs=96.5

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc---
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ---   75 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~---   75 (433)
                      +++.+++++.|...      -+...+..+++.++.|+.++|+|+|||||||+...||..-    |-..+.+..+..-   
T Consensus         7 i~~~~l~ktvg~~~------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd   80 (228)
T COG4181           7 IEVHHLSKTVGQGE------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED   80 (228)
T ss_pred             eehhhhhhhhcCCC------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHH
Confidence            56778888887522      2344678899999999999999999999999999999843    6666766666421   


Q ss_pred             --ccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778         76 --SNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR  153 (433)
Q Consensus        76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R  153 (433)
                        ...+....|+.||.....+.++.++++...+...|.+    ........++.+...+  +---|+-.|..+....+||
T Consensus        81 ~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~----~~~~~~~A~~lL~~vG--Lg~Rl~HyP~qLSGGEQQR  154 (228)
T COG4181          81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGES----SADSRAGAKALLEAVG--LGKRLTHYPAQLSGGEQQR  154 (228)
T ss_pred             HHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCc----cccHHHHHHHHHHHhC--cccccccCccccCchHHHH
Confidence              1122344688999888888899999998887766631    1112233455665553  4444555666666666666


Q ss_pred             h
Q psy16778        154 A  154 (433)
Q Consensus       154 ~  154 (433)
                      .
T Consensus       155 V  155 (228)
T COG4181         155 V  155 (228)
T ss_pred             H
Confidence            4

>PRK09169 hypothetical protein; Validated

Probab=98.58  E-value=5.9e-08  Score=110.45  Aligned_cols=140  Identities=7%  Similarity=-0.165  Sum_probs=96.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHH-HHHHHHhhhCCCcEEE
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI-NRIIHQLNVDNLTGVL  115 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Vi  115 (433)
                      .+..|+|+|++|+||||+++.|++++++.++|+|..+.....  .+...+|....   .++.. .+.+...+.  ..+||
T Consensus      2109 ~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~G--rkI~rIFa~eG---~FRe~Eaa~V~Dllr--~~vVL 2181 (2316)
T PRK09169       2109 GAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIG--KKIARIQALRG---LSPEQAAARVRDALR--WEVVL 2181 (2316)
T ss_pred             hhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhC--CCHHHHHHhcC---chHHHHHHHHHHHhc--CCeEE
Confidence            345899999999999999999999999999999998754221  12222232222   34443 344555443  47888


Q ss_pred             EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC----H--------HhHHHHHhhccCCCCCCCCC
Q psy16778        116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP----A--------DLLESQFQTLEEPDPLVEPD  180 (433)
Q Consensus       116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~----~--------~~l~~~~~~~~~~~~~~~~~  180 (433)
                      +.++   .....+..|.+.+  ++||+..+.+++.+|+.+..+++..    .        ....+.+..+++.|  ++.+
T Consensus      2182 STGGGav~~~enr~~L~~~G--lvV~L~an~~tl~~Rty~g~NRPLL~~~~~~FEiQFHT~esl~Lk~eRhpLY--EqvA 2257 (2316)
T PRK09169       2182 PAEGFGAAVEQARQALGAKG--LRVMRINNGFAAPDTTYAGLNVNLRTAAGLDFEIQFHTADSLRTKNKTHKLY--EKLQ 2257 (2316)
T ss_pred             eCCCCcccCHHHHHHHHHCC--EEEEEECCHHHHHHHhccCCCCccccCCCCccchhccHHHHHHHHHHhHHHH--HHhc
Confidence            8766   5677888888885  8999999999999999765443221    1        22333455566665  5667


Q ss_pred             eEEEccC
Q psy16778        181 VRTVSVN  187 (433)
Q Consensus       181 ~~~Id~~  187 (433)
                      ++.|+++
T Consensus      2258 Dl~V~~~ 2264 (2316)
T PRK09169       2258 DLEVAPA 2264 (2316)
T ss_pred             CcccccC
Confidence            7888876

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.57  E-value=6.3e-07  Score=90.00  Aligned_cols=120  Identities=21%  Similarity=0.210  Sum_probs=77.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCe-EEeCCCCCcc-------c-----------ccccccc-CCCCCCcCC---
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVK-FIDGDHLHPQ-------S-----------NIDKMSA-KQPLNDEDR---   92 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~-~id~D~~~~~-------~-----------~~~~~~~-~~~~~~~~~---   92 (433)
                      .++.+|+++|++||||||++..||.++|+. ++++|.+..-       .           .|..+.. +.....+..   
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~  332 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAE  332 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHH
Confidence            468899999999999999999999999997 6788876320       0           0111100 000000000   


Q ss_pred             -hhH--------HHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEc-CHHHHHHHHHHhhC
Q psy16778         93 -RPW--------LNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKA-EFGVILSRLQKRAE  155 (433)
Q Consensus        93 -~~~--------~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~-~~e~l~~Rl~~R~~  155 (433)
                       ...        ...++.++...+..|.++||++....+.+......... .+.+.+.+ +.++..+|...|..
T Consensus       333 vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~  406 (475)
T PRK12337        333 VLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRHPYQAGALVVPMLVTLPDEALHRRRFELRDR  406 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHhcCCceEEEEEEECCHHHHHHHHHHHhh
Confidence             011        22356677788889999999998888877664443333 33344444 47888899988863

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.57  E-value=3.5e-08  Score=92.39  Aligned_cols=61  Identities=25%  Similarity=0.244  Sum_probs=50.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+    |...+++.++
T Consensus         1 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i   65 (236)
T TIGR03864         1 ALEVAGLSFAYGA----------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDL   65 (236)
T ss_pred             CEEEEeeEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc
Confidence            4788999999974          23677888999999999999999999999999999865    6666766544

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13976 thymidylate kinase; Provisional

Probab=98.56  E-value=7.3e-07  Score=81.70  Aligned_cols=164  Identities=12%  Similarity=0.084  Sum_probs=82.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC-----eEEeCCCCCcccc---ccccccCC-CCCCcCCh-----hHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGV-----KFIDGDHLHPQSN---IDKMSAKQ-PLNDEDRR-----PWLNNINRIIH  104 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~-----~~id~D~~~~~~~---~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~  104 (433)
                      +.|+|.|.-||||||+++.|++.|.-     .++-+..-.....   +...-.+. ........     .....+.+.+.
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~   80 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVIL   80 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999998832     2221111100000   00000010 01110000     00112344566


Q ss_pred             HhhhCCCcEEEEcCc------------ccHHHHHHHHhc----CCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHh
Q psy16778        105 QLNVDNLTGVLVCSA------------LRRNYRDIIRNN----NRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQ  168 (433)
Q Consensus       105 ~~~~~~~~~Vi~~~~------------~~~~~~~~l~~~----~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~  168 (433)
                      ..+..|..+|.|-..            ....+...+.+.    .++++|||++|+++..+|+..++-.....+.+.+..+
T Consensus        81 p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e~~~~~~l~~v~~  160 (209)
T PRK13976         81 PALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYEFMDLEFYDKVRK  160 (209)
T ss_pred             HHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchhcccHHHHHHHHH
Confidence            777777545544211            122333333321    1279999999999999999654321123333443333


Q ss_pred             hccCCCCCCCCCeEEEcc---CCC---HHHHHHHHhcCCC
Q psy16778        169 TLEEPDPLVEPDVRTVSV---NEP---LEGIVSKSAIMPP  202 (433)
Q Consensus       169 ~~~~~~~~~~~~~~~Id~---~~~---~ee~~~~i~~~l~  202 (433)
                      .|............+|+.   ..+   ++++.++|.+.+.
T Consensus       161 ~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~  200 (209)
T PRK13976        161 GFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLH  200 (209)
T ss_pred             HHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHH
Confidence            333322101113455665   234   8899888876653

>PRK07429 phosphoribulokinase; Provisional

Probab=98.56  E-value=1.7e-06  Score=84.48  Aligned_cols=38  Identities=37%  Similarity=0.491  Sum_probs=33.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC---CeEEeCCCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLG---VKFIDGDHLH   73 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg---~~~id~D~~~   73 (433)
                      .++.+|+|+|++||||||+++.|++.++   ..++..|++.
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            4667999999999999999999999886   5678888875

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=98.56  E-value=2.4e-08  Score=87.86  Aligned_cols=96  Identities=20%  Similarity=0.231  Sum_probs=75.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCC-CCCc--
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGD-HLHP--   74 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D-~~~~--   74 (433)
                      .+++++|+..|+.          -.++|++++++..|..-+|+||+|+||||+.-.+..+-    |..+++.+ ++..  
T Consensus         5 iL~~~~vsVsF~G----------F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~   74 (249)
T COG4674           5 ILYLDGVSVSFGG----------FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP   74 (249)
T ss_pred             eEEEeceEEEEcc----------eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCC
Confidence            5789999999998          67889999999999999999999999999999999876    77788874 3332  


Q ss_pred             cccccccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778         75 QSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (433)
                      ...+.....|..||.+.-+..+...++.-....
T Consensus        75 e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~  107 (249)
T COG4674          75 EHRIARAGIGRKFQKPTVFENLTVRENLELALN  107 (249)
T ss_pred             HHHHHHhccCccccCCeehhhccHHHHHHHHhc
Confidence            233445566888998877777776666544433

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.56  E-value=6e-08  Score=90.40  Aligned_cols=89  Identities=19%  Similarity=0.188  Sum_probs=61.0

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI   78 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~   78 (433)
                      +++++|++.|+.          ...+.+.++++.+|.+++|+|++||||||+.+.|++.+    |...++..++......
T Consensus         1 l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~   70 (230)
T TIGR03410         1 LEVSNLNVYYGQ----------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPH   70 (230)
T ss_pred             CEEEeEEEEeCC----------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHH
Confidence            468899999975          23677888999999999999999999999999999876    6667766554321100


Q ss_pred             --cccccCCCCCCcCChhHHHHHHH
Q psy16778         79 --DKMSAKQPLNDEDRRPWLNNINR  101 (433)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~~~~~  101 (433)
                        .....++.+++.......+..++
T Consensus        71 ~~~~~~i~~~~q~~~~~~~~tv~~~   95 (230)
T TIGR03410        71 ERARAGIAYVPQGREIFPRLTVEEN   95 (230)
T ss_pred             HHHHhCeEEeccCCcccCCCcHHHH
Confidence              11234566666443333333333

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.56  E-value=3.7e-08  Score=85.46  Aligned_cols=94  Identities=17%  Similarity=0.185  Sum_probs=71.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS-   76 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~-   76 (433)
                      ++.++|+-++||.|.          .++-++++.++|.+|-|+|.|||||||+.|.+.=.-    |...+.+.++.-.. 
T Consensus         6 ~l~v~dlHK~~G~~e----------VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~   75 (256)
T COG4598           6 ALEVEDLHKRYGEHE----------VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRD   75 (256)
T ss_pred             ceehhHHHhhcccch----------hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeC
Confidence            688999999999855          566677779999999999999999999999887422    66667666653110 


Q ss_pred             -------------cccccccCCCCCCcCChhHHHHHHHHHHH
Q psy16778         77 -------------NIDKMSAKQPLNDEDRRPWLNNINRIIHQ  105 (433)
Q Consensus        77 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (433)
                                   ...+...++.||..+.|..++.++++++.
T Consensus        76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa  117 (256)
T COG4598          76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA  117 (256)
T ss_pred             CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc
Confidence                         01122347888888888888888888765

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.55  E-value=3.1e-08  Score=98.34  Aligned_cols=136  Identities=15%  Similarity=0.101  Sum_probs=85.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEeCCCCCcc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL------GVKFIDGDHLHPQ   75 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id~D~~~~~   75 (433)
                      .+++++|++.|+.          ...++++++++..|.+++|+|++||||||+.++|++.+      |...+++.++...
T Consensus         5 ~l~~~~l~~~~~~----------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~   74 (362)
T TIGR03258         5 GIRIDHLRVAYGA----------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA   74 (362)
T ss_pred             EEEEEEEEEEECC----------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCC
Confidence            3678999999975          34677888999999999999999999999999999854      5555665554321


Q ss_pred             ccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         76 SNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      .. .....++.||+...++.++..+++...+...+..    .........+.+....  +--+++..+..+....++|-
T Consensus        75 ~~-~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~----~~~~~~~v~~~l~~~g--L~~~~~~~~~~LSgGq~QRv  146 (362)
T TIGR03258        75 PP-HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMP----KADIAERVADALKLVG--LGDAAAHLPAQLSGGMQQRI  146 (362)
T ss_pred             CH-HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhcC--CCchhhCChhhCCHHHHHHH
Confidence            11 1234578888876666666666665443322210    0000112223333332  23345666777776666664

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.55  E-value=3.2e-08  Score=93.82  Aligned_cols=61  Identities=21%  Similarity=0.224  Sum_probs=51.2

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      |+++++++++.|+.          ...+.++++++++|.+++|+|++||||||+.+.|++.+    |...+++..
T Consensus         1 ~~l~~~~l~~~~~~----------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~   65 (255)
T PRK11231          1 MTLRTENLTVGYGT----------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKP   65 (255)
T ss_pred             CEEEEEeEEEEECC----------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEE
Confidence            78999999999975          23677788999999999999999999999999999865    555565543

>PRK07933 thymidylate kinase; Validated

Probab=98.55  E-value=1.5e-06  Score=79.97  Aligned_cols=162  Identities=14%  Similarity=0.090  Sum_probs=83.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCC------CccccccccccCC--CCC-CcCChh-HH--HHH--HH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHL------HPQSNIDKMSAKQ--PLN-DEDRRP-WL--NNI--NR  101 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~------~~~~~~~~~~~~~--~~~-~~~~~~-~~--~~~--~~  101 (433)
                      |.|+|.|.-||||||+++.|++.+   |..++-+..-      ... .+...-.+.  ... .+.... .+  .+.  ..
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~-~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~~~   79 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHAD-LAAEALHGRHGDLADSVYAMATLFALDRAGARD   79 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccH-HHHHHHcCCCCcccCCHHHHHHHHhhhhhhhHH
Confidence            579999999999999999999998   5444322211      110 000100010  000 000000 01  011  12


Q ss_pred             HHHHhhhCCCcEEEEcCcc-----------------cHHHHHHHHh---cC--CeEEEEEEcCHHHHHHHHHHhhCC---
Q psy16778        102 IIHQLNVDNLTGVLVCSAL-----------------RRNYRDIIRN---NN--RVVFIYLKAEFGVILSRLQKRAEH---  156 (433)
Q Consensus       102 ~~~~~~~~~~~~Vi~~~~~-----------------~~~~~~~l~~---~~--~~~vv~L~~~~e~l~~Rl~~R~~~---  156 (433)
                      .+...+..|..+|.|-...                 ...+...+..   ..  ++++|||++++++..+|+.+|++.   
T Consensus        80 ~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~  159 (213)
T PRK07933         80 ELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQDAD  159 (213)
T ss_pred             HHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccccCC
Confidence            3555556665444442110                 1122222321   11  279999999999999999998631   


Q ss_pred             -----CCC-HHhHHHHHhhccCCCCC-CCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        157 -----FMP-ADLLESQFQTLEEPDPL-VEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       157 -----~~~-~~~l~~~~~~~~~~~~~-~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                           ... .+.+....+.+...... .....++||.+.+++++.++|.+.+
T Consensus       160 ~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~  211 (213)
T PRK07933        160 RARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL  211 (213)
T ss_pred             cccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence                 111 12222222222221110 0124577888899999999987654

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.55  E-value=4.4e-08  Score=90.66  Aligned_cols=81  Identities=16%  Similarity=0.147  Sum_probs=56.4

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI   78 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~   78 (433)
                      +++++|++.|+...        ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++......
T Consensus         1 l~~~~l~~~~~~~~--------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~   72 (220)
T cd03263           1 LQIRNLTKTYKKGT--------KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKA   72 (220)
T ss_pred             CEEEeeEEEeCCCC--------ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHH
Confidence            46789999997411        23577788999999999999999999999999999865    6666666544221111


Q ss_pred             cccccCCCCCCcC
Q psy16778         79 DKMSAKQPLNDED   91 (433)
Q Consensus        79 ~~~~~~~~~~~~~   91 (433)
                      .....++.+++..
T Consensus        73 ~~~~i~~v~q~~~   85 (220)
T cd03263          73 ARQSLGYCPQFDA   85 (220)
T ss_pred             HhhhEEEecCcCC
Confidence            1122456666543

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.55  E-value=5.2e-08  Score=91.49  Aligned_cols=61  Identities=15%  Similarity=0.139  Sum_probs=51.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         3 ~l~~~~l~~~~~~----------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   67 (241)
T PRK10895          3 TLTAKNLAKAYKG----------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDI   67 (241)
T ss_pred             eEEEeCcEEEeCC----------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence            6889999999975          23677888999999999999999999999999999975    5666666554

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.55  E-value=4.6e-08  Score=89.04  Aligned_cols=60  Identities=22%  Similarity=0.097  Sum_probs=49.7

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 l~~~~l~~~~~~----------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   64 (198)
T TIGR01189         1 LAARNLACSRGE----------RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL   64 (198)
T ss_pred             CEEEEEEEEECC----------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc
Confidence            468899999975          23677888999999999999999999999999999976    5566666544

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.54  E-value=5.9e-08  Score=90.63  Aligned_cols=65  Identities=25%  Similarity=0.235  Sum_probs=51.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+...      -.-..+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 ~i~~~~l~~~~~~~~------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   69 (233)
T cd03258           1 MIELKNVSKVFGDTG------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDL   69 (233)
T ss_pred             CeEEecceEEccCCC------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence            478999999997520      0003677888999999999999999999999999999976    6666766554

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.54  E-value=4.1e-08  Score=97.01  Aligned_cols=96  Identities=15%  Similarity=0.127  Sum_probs=64.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS-   76 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~-   76 (433)
                      |+++++|++.|+...      .....+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++.... 
T Consensus         1 mi~i~~l~~~y~~~~------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~   74 (343)
T PRK11153          1 MIELKNISKVFPQGG------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSE   74 (343)
T ss_pred             CEEEEeEEEEeCCCC------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCH
Confidence            478999999997200      0123677788999999999999999999999999999976    66667665543210 


Q ss_pred             -cc--cccccCCCCCCcCChhHHHHHHHHH
Q psy16778         77 -NI--DKMSAKQPLNDEDRRPWLNNINRII  103 (433)
Q Consensus        77 -~~--~~~~~~~~~~~~~~~~~~~~~~~~~  103 (433)
                       ..  .....++.+++.......+..+++.
T Consensus        75 ~~~~~~~~~ig~v~q~~~l~~~~tv~eni~  104 (343)
T PRK11153         75 KELRKARRQIGMIFQHFNLLSSRTVFDNVA  104 (343)
T ss_pred             HHHHHHhcCEEEEeCCCccCCCCcHHHHHH
Confidence             00  1123466777654433344444443

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.54  E-value=6e-08  Score=89.85  Aligned_cols=90  Identities=14%  Similarity=0.121  Sum_probs=60.5

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc-
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN-   77 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~-   77 (433)
                      +++++|++.|+.          -..+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++..... 
T Consensus         1 l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~   70 (222)
T cd03224           1 LEVENLNAGYGK----------SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPH   70 (222)
T ss_pred             CEEeeEEeecCC----------eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHH
Confidence            467899999975          13567788999999999999999999999999999865    666676654432111 


Q ss_pred             -ccccccCCCCCCcCChhHHHHHHHH
Q psy16778         78 -IDKMSAKQPLNDEDRRPWLNNINRI  102 (433)
Q Consensus        78 -~~~~~~~~~~~~~~~~~~~~~~~~~  102 (433)
                       ......++.+++.......+..+++
T Consensus        71 ~~~~~~i~~~~q~~~~~~~~t~~~~l   96 (222)
T cd03224          71 ERARAGIGYVPEGRRIFPELTVEENL   96 (222)
T ss_pred             HHHhcCeEEeccccccCCCCcHHHHH
Confidence             1112345666664433333444443

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.54  E-value=2.6e-08  Score=99.87  Aligned_cols=103  Identities=22%  Similarity=0.282  Sum_probs=69.5

Q ss_pred             ccccccceeeeccCCcccee--------------eeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----C
Q psy16778          2 AVSNFGNWRYWGMWPPQYVV--------------TLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----G   63 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g   63 (433)
                      ++++++|++.||.+...+..              +-....++++++++.+|.+++|+|++||||||+.+.|++.+    |
T Consensus         4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG   83 (400)
T PRK10070          4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG   83 (400)
T ss_pred             EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence            58899999999986532211              00012577889999999999999999999999999999976    6


Q ss_pred             CeEEeCCCCCcccc--c---cccccCCCCCCcCChhHHHHHHHHHH
Q psy16778         64 VKFIDGDHLHPQSN--I---DKMSAKQPLNDEDRRPWLNNINRIIH  104 (433)
Q Consensus        64 ~~~id~D~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (433)
                      ..++++.++.....  .   .....++.+|.....+..+..+++..
T Consensus        84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~  129 (400)
T PRK10070         84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAF  129 (400)
T ss_pred             EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHH
Confidence            67777765532110  0   11235677777554444455555443

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.54  E-value=3.8e-08  Score=87.60  Aligned_cols=60  Identities=18%  Similarity=0.208  Sum_probs=48.7

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..+
T Consensus         1 l~~~~l~~~~~~----------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~   64 (173)
T cd03230           1 IEVRNLSKRYGK----------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDI   64 (173)
T ss_pred             CEEEEEEEEECC----------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence            467889999964          23677888999999999999999999999999999965    5555655443

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.54  E-value=1.6e-07  Score=80.11  Aligned_cols=96  Identities=20%  Similarity=0.277  Sum_probs=72.2

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCc--
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHP--   74 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~--   74 (433)
                      |++++.++++.||.          .+++-|.+++...|..++|.||||+||||+.|.|.-.-    |...|-...+--  
T Consensus         1 msirv~~in~~yg~----------~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~   70 (242)
T COG4161           1 MSIQLNGINCFYGA----------HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSK   70 (242)
T ss_pred             CceEEccccccccc----------chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccccccccc
Confidence            78999999999998          34555666889999999999999999999999887522    545554444321  


Q ss_pred             ---ccccc--ccccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778         75 ---QSNID--KMSAKQPLNDEDRRPWLNNINRIIHQL  106 (433)
Q Consensus        75 ---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (433)
                         ...+.  +...|+.||....|+.+..+++.++.-
T Consensus        71 ~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap  107 (242)
T COG4161          71 TPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP  107 (242)
T ss_pred             CccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh
Confidence               11111  234589999999999999998888753

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.54  E-value=7.3e-08  Score=89.64  Aligned_cols=71  Identities=17%  Similarity=0.135  Sum_probs=57.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      .+++++|+++|..-...+... ...+++++++++.+|++++|+|.|||||||++|.+.+.+    |..++++.++.
T Consensus         4 ll~v~~l~k~f~~~~~~~~~~-~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~   78 (268)
T COG4608           4 LLEVKNLKKYFPVGKGFGKKR-YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT   78 (268)
T ss_pred             eEEEeccEEEEecccccCccc-ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh
Confidence            689999999996421111111 356899999999999999999999999999999999866    77888877753

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.53  E-value=3.3e-08  Score=85.97  Aligned_cols=89  Identities=18%  Similarity=0.176  Sum_probs=63.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc-c
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-S   76 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-~   76 (433)
                      .++++|++++|..+.-.-+.+. ..+...+|++..++..++|+|.+||||||++++|++..    |...++...+.-. .
T Consensus         4 LLeV~nLsKtF~~~~~lf~r~~-~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy   82 (267)
T COG4167           4 LLEVRNLSKTFRYRTGLFRRQT-VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY   82 (267)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhh-hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence            5789999999954332222222 24677888999999999999999999999999999977    7777777766422 1


Q ss_pred             cccccccCCCCCCcC
Q psy16778         77 NIDKMSAKQPLNDED   91 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~   91 (433)
                      ..+.....++||+++
T Consensus        83 ~~R~k~IRMiFQDpn   97 (267)
T COG4167          83 SFRSKRIRMIFQDPN   97 (267)
T ss_pred             HhhhhheeeeecCCc
Confidence            222234467777754

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.53  E-value=5.2e-08  Score=89.55  Aligned_cols=78  Identities=21%  Similarity=0.172  Sum_probs=55.3

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI   78 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~   78 (433)
                      ++++++++.|+.          ...++++++++.+| +++|+|++||||||+.+.|++.+    |...+++.++......
T Consensus         1 i~~~~~~~~~~~----------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~   69 (211)
T cd03264           1 LQLENLTKRYGK----------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK   69 (211)
T ss_pred             CEEEEEEEEECC----------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHH
Confidence            467899999975          23677888999999 99999999999999999999865    6666666554321101


Q ss_pred             cccccCCCCCCcC
Q psy16778         79 DKMSAKQPLNDED   91 (433)
Q Consensus        79 ~~~~~~~~~~~~~   91 (433)
                      .....++.+++..
T Consensus        70 ~~~~i~~~~q~~~   82 (211)
T cd03264          70 LRRRIGYLPQEFG   82 (211)
T ss_pred             HHhheEEecCCCc
Confidence            1123455666543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.53  E-value=3.6e-08  Score=98.91  Aligned_cols=90  Identities=14%  Similarity=0.114  Sum_probs=63.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS-   76 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~-   76 (433)
                      ++++++|++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++.... 
T Consensus         3 ~L~~~nls~~y~~----------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~   72 (402)
T PRK09536          3 MIDVSDLSVEFGD----------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA   72 (402)
T ss_pred             eEEEeeEEEEECC----------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCH
Confidence            7899999999986          23677788999999999999999999999999999976    66777776553211 


Q ss_pred             cccccccCCCCCCcCChhHHHHHHH
Q psy16778         77 NIDKMSAKQPLNDEDRRPWLNNINR  101 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~  101 (433)
                      .......++.+++......++..++
T Consensus        73 ~~~~~~ig~v~q~~~l~~~~tv~e~   97 (402)
T PRK09536         73 RAASRRVASVPQDTSLSFEFDVRQV   97 (402)
T ss_pred             HHHhcceEEEccCCCCCCCCCHHHH
Confidence            0112234666665443333333333

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=98.53  E-value=3.1e-07  Score=90.18  Aligned_cols=172  Identities=16%  Similarity=0.159  Sum_probs=98.8

Q ss_pred             hhhcceeecccccCC--CCCCceeeeCCCccCCceeechhhhccccCccc---hHHHHHHHHhcCCceEEecCCC-----
Q psy16778        222 ALKVLRIRPRVMRDL--SKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEG---EIGNAAAVGEVGGIYILSTIST-----  291 (433)
Q Consensus       222 a~~~~~l~pr~l~~~--~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~---e~~~a~aa~~~g~~~~~s~~s~-----  291 (433)
                      .|++++|.+..|-.+  +++||+|++||++++.||+++|+++.   ++.+   -..++++|.+.|+++++.+.+.     
T Consensus        22 ~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg---~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~   98 (333)
T TIGR02151        22 GFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGG---SEEAGKINRNLARAARELGIPMGVGSQRAALKDP   98 (333)
T ss_pred             CcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCC---chhHHHHHHHHHHHHHHcCCCeEEcCchhhccCh
Confidence            388999999888665  47999999999999999999998653   3333   3459999999999998876651     


Q ss_pred             ---CCHHHHHHhCCCCcceEEEeeccCHHH-HHHHHHHHHHcCCcEEEEeeeec-ccCccccccccccCCCccchHHHHH
Q psy16778        292 ---TSIEELAEKTPQTTKWFQLYIYRDREI-TKSLVQRAEKAGYKALVLTVDTN-VFGTRYADIRNKFNMPSHLNIEELA  366 (433)
Q Consensus       292 ---~~~eeva~~~~~~~~w~qly~~~d~~~-~~~~~~~A~~ag~~~i~ltvD~~-~~G~r~~~~~~~~~~~~~~s~e~i~  366 (433)
                         .++..+.+..++.+....+......+. .....+..+..+..++-+.+..+ ....++.+ + .|.. ---.++.|.
T Consensus        99 ~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~-~-~f~~-~le~i~~i~  175 (333)
T TIGR02151        99 ETADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGD-R-NFKG-WLEKIAEIC  175 (333)
T ss_pred             hhHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCC-c-CHHH-HHHHHHHHH
Confidence               233334443455554443332221110 11223333344556666554211 11111111 0 0100 001233333


Q ss_pred             hhCCCcchhhhhhccCCH---HHHHHHHHHHHHcCCcEEEEec
Q psy16778        367 EKTPQTTKWFQLYIYRDR---EITKSLVQRAEKAGYKALVLTV  406 (433)
Q Consensus       367 ~~~~~~~~w~Qly~~~~~---~~~~~~~~ra~~~G~~aivlTv  406 (433)
                      +..       .+++..|.   .++.+.+++++++|+++|+|+=
T Consensus       176 ~~~-------~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg  211 (333)
T TIGR02151       176 SQL-------SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG  211 (333)
T ss_pred             Hhc-------CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence            322       22222222   2688999999999999999963

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.53  E-value=1.2e-06  Score=83.67  Aligned_cols=35  Identities=34%  Similarity=0.383  Sum_probs=30.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCc
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHP   74 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~   74 (433)
                      +|+|+|++||||||+++.|++.+   +..++..|++..
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~   38 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHS   38 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccccc
Confidence            48999999999999999999877   566888998753

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.52  E-value=5.9e-08  Score=91.19  Aligned_cols=62  Identities=24%  Similarity=0.368  Sum_probs=52.1

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      |+++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+    |...+++.++
T Consensus         1 ~~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   66 (242)
T PRK11124          1 MSIQLNGINCFYGA----------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF   66 (242)
T ss_pred             CEEEEEeeEEEECC----------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence            78999999999975          23677888999999999999999999999999999865    5556665543

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.52  E-value=6.6e-08  Score=88.69  Aligned_cols=89  Identities=13%  Similarity=0.110  Sum_probs=60.2

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI   78 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~   78 (433)
                      ++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++... ..
T Consensus         1 l~~~~l~~~~~~----------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~   69 (208)
T cd03268           1 LKTNDLTKTYGK----------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IE   69 (208)
T ss_pred             CEEEEEEEEECC----------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HH
Confidence            467899999964          23677888999999999999999999999999999865    5566666544321 01


Q ss_pred             cccccCCCCCCcCChhHHHHHHHH
Q psy16778         79 DKMSAKQPLNDEDRRPWLNNINRI  102 (433)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~  102 (433)
                      .....++.+++.......+..+++
T Consensus        70 ~~~~i~~~~q~~~~~~~~tv~e~l   93 (208)
T cd03268          70 ALRRIGALIEAPGFYPNLTARENL   93 (208)
T ss_pred             HHhhEEEecCCCccCccCcHHHHH
Confidence            112345566654333333444443

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.52  E-value=4.8e-08  Score=89.94  Aligned_cols=60  Identities=23%  Similarity=0.242  Sum_probs=49.9

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 i~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~   64 (213)
T cd03301           1 VELENVTKRFGN----------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV   64 (213)
T ss_pred             CEEEeeEEEECC----------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence            468899999975          23577888999999999999999999999999999976    6566766554

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.51  E-value=7e-08  Score=88.07  Aligned_cols=60  Identities=20%  Similarity=0.083  Sum_probs=49.7

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 l~i~~l~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   64 (201)
T cd03231           1 LEADELTCERDG----------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPL   64 (201)
T ss_pred             CEEEEEEEEeCC----------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec
Confidence            468899999975          23677888999999999999999999999999999876    5566665544

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.51  E-value=3.8e-08  Score=91.43  Aligned_cols=139  Identities=14%  Similarity=0.046  Sum_probs=88.7

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCc--
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHP--   74 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~--   74 (433)
                      |++.+++++++|+..         ...+.+.++++.+|..++|+|++||||||+.+.|+..+    |...+++-++..  
T Consensus         2 ~~i~~~~l~~~y~~~---------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~   72 (235)
T COG1122           2 RMIEAENLSFRYPGR---------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEK   72 (235)
T ss_pred             ceEEEEEEEEEcCCC---------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchh
Confidence            467889999999763         24667788999999999999999999999999999976    666676655431  


Q ss_pred             cccccccccCCCCCCcCChhHHHH-HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778         75 QSNIDKMSAKQPLNDEDRRPWLNN-INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR  153 (433)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R  153 (433)
                      .........|+.||++..+-+... .++++......+.+.    ........+.+...+  +--+++.++..+.....+|
T Consensus        73 ~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~----~e~~~rv~~~l~~vg--l~~~~~r~p~~LSGGqkqR  146 (235)
T COG1122          73 SLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPR----EEIEERVAEALELVG--LEELLDRPPFNLSGGQKQR  146 (235)
T ss_pred             hHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCH----HHHHHHHHHHHHHcC--chhhccCCccccCCcceee
Confidence            111123356899999766555443 344444444444210    001111223333332  3344677777777776666


Q ss_pred             h
Q psy16778        154 A  154 (433)
Q Consensus       154 ~  154 (433)
                      -
T Consensus       147 v  147 (235)
T COG1122         147 V  147 (235)
T ss_pred             H
Confidence            4

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.51  E-value=6.3e-08  Score=91.49  Aligned_cols=51  Identities=24%  Similarity=0.182  Sum_probs=45.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus         3 ~l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247          3 KIEIRDLKVSFGQ----------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             eEEEEeeEEEECC----------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            6899999999975          23677888999999999999999999999999999864

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.50  E-value=9.6e-08  Score=89.12  Aligned_cols=90  Identities=13%  Similarity=0.114  Sum_probs=61.1

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc--
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS--   76 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~--   76 (433)
                      +++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..+....  
T Consensus         1 l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~   70 (232)
T cd03218           1 LRAENLSKRYGK----------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH   70 (232)
T ss_pred             CeEEEEEEEeCC----------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHh
Confidence            468899999975          23678888999999999999999999999999999865    66667665442211  


Q ss_pred             cccccccCCCCCCcCChhHHHHHHHH
Q psy16778         77 NIDKMSAKQPLNDEDRRPWLNNINRI  102 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (433)
                      .......++.++........+..+++
T Consensus        71 ~~~~~~i~~~~q~~~~~~~~tv~~~l   96 (232)
T cd03218          71 KRARLGIGYLPQEASIFRKLTVEENI   96 (232)
T ss_pred             HHHhccEEEecCCccccccCcHHHHH
Confidence            00112345666654433333444443

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.50  E-value=1e-07  Score=88.60  Aligned_cols=77  Identities=16%  Similarity=0.117  Sum_probs=59.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      +++++|++++|+..          ..+.+.++++.+|.+++|+||+||||||+.|.+.+.+    |...+......... 
T Consensus         4 ~i~v~nl~v~y~~~----------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~-   72 (254)
T COG1121           4 MIEVENLTVSYGNR----------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR-   72 (254)
T ss_pred             EEEEeeeEEEECCE----------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc-
Confidence            68999999999851          2566777999999999999999999999999999854    77777766553321 


Q ss_pred             ccccccCCCCCCc
Q psy16778         78 IDKMSAKQPLNDE   90 (433)
Q Consensus        78 ~~~~~~~~~~~~~   90 (433)
                       .....||.+|..
T Consensus        73 -~~~~IgYVPQ~~   84 (254)
T COG1121          73 -KRLRIGYVPQKS   84 (254)
T ss_pred             -cCCeEEEcCccc
Confidence             123567777753

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.49  E-value=7.6e-08  Score=88.57  Aligned_cols=60  Identities=28%  Similarity=0.281  Sum_probs=49.5

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 l~~~~l~~~~~~----------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   64 (213)
T cd03262           1 IEIKNLHKSFGD----------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKL   64 (213)
T ss_pred             CEEEEEEEEECC----------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence            467899999975          23677888999999999999999999999999999865    5566665544

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.49  E-value=5e-08  Score=97.20  Aligned_cols=146  Identities=15%  Similarity=0.213  Sum_probs=89.2

Q ss_pred             cccccceeeeccCCcccee--------------eeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CC
Q psy16778          3 VSNFGNWRYWGMWPPQYVV--------------TLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GV   64 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~   64 (433)
                      ++++||++.||.++-.+..              +-....+.++++++.+|.+++|+|++||||||+.+.|++.+    |.
T Consensus         1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~   80 (382)
T TIGR03415         1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS   80 (382)
T ss_pred             CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence            4678888989876544321              11233567899999999999999999999999999999976    77


Q ss_pred             eEEeCC----CCCcc--ccc---cccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeE
Q psy16778         65 KFIDGD----HLHPQ--SNI---DKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVV  135 (433)
Q Consensus        65 ~~id~D----~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~  135 (433)
                      .++++.    ++...  ...   .....++.||.....+..+..+++.......+..    .........+.+...+  +
T Consensus        81 I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~----~~~~~~~a~e~le~vg--L  154 (382)
T TIGR03415        81 VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMP----EAERRKRVDEQLELVG--L  154 (382)
T ss_pred             EEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcC--C
Confidence            788763    22111  011   1124578888876666566666665443222210    0001112234444432  3


Q ss_pred             EEEEEcCHHHHHHHHHHhh
Q psy16778        136 FIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus       136 vv~L~~~~e~l~~Rl~~R~  154 (433)
                      --+.+..+..+....++|-
T Consensus       155 ~~~~~~~~~~LSgGq~QRV  173 (382)
T TIGR03415       155 AQWADKKPGELSGGMQQRV  173 (382)
T ss_pred             chhhcCChhhCCHHHHHHH
Confidence            3455666777777776664

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.49  E-value=1.1e-07  Score=90.11  Aligned_cols=51  Identities=27%  Similarity=0.347  Sum_probs=45.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         4 ~l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267          4 AIETVNLRVYYGS----------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             eEEEEeEEEEeCC----------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            6789999999975          23677888999999999999999999999999999864

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.49  E-value=1.9e-06  Score=82.41  Aligned_cols=120  Identities=19%  Similarity=0.244  Sum_probs=75.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCe-EEeCCCCCcc-------ccccccc----cCCC-----CCCcC--ChhHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVK-FIDGDHLHPQ-------SNIDKMS----AKQP-----LNDED--RRPWL   96 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~-~id~D~~~~~-------~~~~~~~----~~~~-----~~~~~--~~~~~   96 (433)
                      +.|.+|+|.|++||||||++..|+.++|.. ++.+|.+.+-       .....+.    ..+.     .....  ...+.
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~  169 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFE  169 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHH
Confidence            467899999999999999999999999987 6888876510       0000000    0000     00110  11111


Q ss_pred             -------HHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEE-cCHHHHHHHHHHhhC
Q psy16778         97 -------NNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLK-AEFGVILSRLQKRAE  155 (433)
Q Consensus        97 -------~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~-~~~e~l~~Rl~~R~~  155 (433)
                             ..++.++......|.+.||.+....+.+......... .+.+++. -+.+...+|...|..
T Consensus       170 ~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~  237 (301)
T PRK04220        170 RHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLENPNVFMFVLTLSDEEAHKARFYARAR  237 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHh
Confidence                   2356667777788999999998888877554322222 3445555 456889999888763

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.48  E-value=6.4e-08  Score=90.85  Aligned_cols=61  Identities=25%  Similarity=0.234  Sum_probs=50.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+    |..++++.++
T Consensus         1 ~l~~~~l~~~~~~----------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   65 (240)
T PRK09493          1 MIEFKNVSKHFGP----------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV   65 (240)
T ss_pred             CEEEEeEEEEECC----------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence            4788999999974          23677888999999999999999999999999999876    5566666554

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.48  E-value=8.1e-08  Score=90.58  Aligned_cols=51  Identities=24%  Similarity=0.188  Sum_probs=45.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      |+++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus         1 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972         1 AIEIENLNLFYGE----------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             CEEEEEEEEEECC----------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            5789999999975          23677888999999999999999999999999999864

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.48  E-value=8.4e-08  Score=90.14  Aligned_cols=62  Identities=21%  Similarity=0.131  Sum_probs=51.4

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      |.++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+    |...+++.++
T Consensus         2 ~~l~~~~l~~~~~~----------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   67 (241)
T PRK14250          2 NEIEFKEVSYSSFG----------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI   67 (241)
T ss_pred             ceEEEEeEEEEeCC----------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh
Confidence            47899999999975          23567888999999999999999999999999999865    5566665443

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=98.48  E-value=6.8e-07  Score=80.41  Aligned_cols=154  Identities=18%  Similarity=0.150  Sum_probs=79.2

Q ss_pred             EEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccc---ccccccc-CCCCCCcCChhHH-----HHHHHHHHHhhhCC
Q psy16778         43 IMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQS---NIDKMSA-KQPLNDEDRRPWL-----NNINRIIHQLNVDN  110 (433)
Q Consensus        43 l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~---~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  110 (433)
                      |-|..||||||+++.|.+.+   |..++-.-.-....   .....-. ..........-.+     ......+...+..|
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g   80 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRG   80 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            57999999999999999998   44322111111000   0011001 1111110000000     12334556667778


Q ss_pred             CcEEEEcCc------------ccHHHH-HHHHhcC--C-eEEEEEEcCHHHHHHHHHHhhCC-CCC---HHhHHHHHhhc
Q psy16778        111 LTGVLVCSA------------LRRNYR-DIIRNNN--R-VVFIYLKAEFGVILSRLQKRAEH-FMP---ADLLESQFQTL  170 (433)
Q Consensus       111 ~~~Vi~~~~------------~~~~~~-~~l~~~~--~-~~vv~L~~~~e~l~~Rl~~R~~~-~~~---~~~l~~~~~~~  170 (433)
                      ..+|+|-..            ....+. .......  . .+++||++++++..+|+..|+.. ...   .+.+....+.+
T Consensus        81 ~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~~y  160 (186)
T PF02223_consen   81 KIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVREAY  160 (186)
T ss_dssp             SEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHHHH
T ss_pred             CEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHHHH
Confidence            767776211            112222 2222211  2 78999999999999999999761 111   11222222222


Q ss_pred             cCCCCCCCCCeEEEccCCCHHHHHHHH
Q psy16778        171 EEPDPLVEPDVRTVSVNEPLEGIVSKS  197 (433)
Q Consensus       171 ~~~~~~~~~~~~~Id~~~~~ee~~~~i  197 (433)
                      .+... ....-++||++.+++++.++|
T Consensus       161 ~~l~~-~~~~~~iid~~~~~e~v~~~I  186 (186)
T PF02223_consen  161 LELAK-DPNNWVIIDASRSIEEVHEQI  186 (186)
T ss_dssp             HHHHH-TTTTEEEEETTS-HHHHHHHH
T ss_pred             HHHHc-CCCCEEEEECCCCHHHHHhhC
Confidence            22110 123668899999999999876

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.47  E-value=8.2e-08  Score=88.18  Aligned_cols=60  Identities=22%  Similarity=0.258  Sum_probs=48.4

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+.          ...+.+.++++.+|.+++|+|++||||||+.+.|++.+    |...+++..+
T Consensus         1 l~~~~l~~~~~~----------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   64 (210)
T cd03269           1 LEVENVTKRFGR----------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPL   64 (210)
T ss_pred             CEEEEEEEEECC----------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCch
Confidence            467899999964          23567778999999999999999999999999999865    5556665443

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.47  E-value=1.2e-07  Score=89.51  Aligned_cols=61  Identities=23%  Similarity=0.182  Sum_probs=50.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+.          -..+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..+
T Consensus         3 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   67 (250)
T PRK11264          3 AIEVKNLVKKFHG----------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITI   67 (250)
T ss_pred             cEEEeceEEEECC----------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence            5899999999975          23677888999999999999999999999999999865    4555554443

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=1.1e-07  Score=90.16  Aligned_cols=61  Identities=21%  Similarity=0.314  Sum_probs=51.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..+
T Consensus         5 ~l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   69 (255)
T PRK11300          5 LLSVSGLMMRFGG----------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI   69 (255)
T ss_pred             eEEEeeEEEEECC----------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEEC
Confidence            5789999999975          23567778999999999999999999999999999875    6667766554

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=1.2e-07  Score=89.26  Aligned_cols=62  Identities=19%  Similarity=0.273  Sum_probs=50.8

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-------CCeEEeCCCC
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-------GVKFIDGDHL   72 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-------g~~~id~D~~   72 (433)
                      |+++++++++.|+.          ...+.+.++++..|.+++|+|++||||||+.+.|++.+       |...+++.++
T Consensus         1 ~~~~~~~l~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i   69 (246)
T PRK14269          1 MIAKTTNLNLFYGK----------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV   69 (246)
T ss_pred             CceeeeeeEEEECC----------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence            78999999999975          23567788999999999999999999999999999853       4445555443

>PRK10908 cell division protein FtsE; Provisional

Probab=98.45  E-value=9.2e-08  Score=88.66  Aligned_cols=61  Identities=18%  Similarity=0.191  Sum_probs=49.7

Q ss_pred             ccccccceeee-ccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYW-GMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.| +.          ...+.+.++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 ~l~~~~l~~~~~~~----------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i   66 (222)
T PRK10908          1 MIRFEHVSKAYLGG----------RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDI   66 (222)
T ss_pred             CEEEEeeEEEecCC----------CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence            47889999999 43          23577888999999999999999999999999999876    5555655444

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.45  E-value=1.1e-06  Score=78.12  Aligned_cols=62  Identities=24%  Similarity=0.181  Sum_probs=49.1

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+...        ...+.+.++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 i~~~~l~~~~~~~~--------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~   66 (173)
T cd03246           1 LEVENVSFRYPGAE--------PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADI   66 (173)
T ss_pred             CEEEEEEEEcCCCC--------CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEc
Confidence            46788999997522        23566777999999999999999999999999999976    6566665444

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.45  E-value=1.6e-07  Score=82.93  Aligned_cols=62  Identities=24%  Similarity=0.232  Sum_probs=53.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      |+++++|++.||.          ...+.+.++++.+|.+..|+||+|+||||+..++++.+    |...+++-++.
T Consensus         1 MI~i~nv~K~y~~----------~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~   66 (252)
T COG4604           1 MITIENVSKSYGT----------KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELT   66 (252)
T ss_pred             CeeehhhhHhhCC----------EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecc
Confidence            5789999999998          34777889999999999999999999999999999866    67777777764

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.44  E-value=1.3e-07  Score=88.92  Aligned_cols=61  Identities=18%  Similarity=0.238  Sum_probs=50.0

Q ss_pred             ccccccceeeec-cCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWG-MWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+ .          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 ~l~~~~l~~~~~~~----------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   66 (243)
T TIGR02315         1 MLEVENLSKVYPNG----------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDI   66 (243)
T ss_pred             CeEEEeeeeecCCC----------cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEh
Confidence            478899999997 3          23677888999999999999999999999999999865    5555655443

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.44  E-value=1.2e-07  Score=89.57  Aligned_cols=51  Identities=25%  Similarity=0.148  Sum_probs=45.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++++++++.|+.          ...+.+.++++++|.+++|+|++||||||+++.|++.+
T Consensus         4 ~l~~~nl~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256          4 KVKLEQLNVHFGK----------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             EEEEEEEEEEeCC----------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            4788999999974          23677888999999999999999999999999999864

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.44  E-value=1.4e-06  Score=75.14  Aligned_cols=50  Identities=22%  Similarity=0.154  Sum_probs=42.4

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++++.|+..          ..+.++++++++|.+++|+|++||||||+.+.|++.+
T Consensus         1 l~~~~l~~~~~~~----------~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221           1 IELENLSKTYGGK----------LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CEEEEEEEEECCc----------eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            4678999999752          2456677889999999999999999999999999865

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=1.2e-07  Score=89.78  Aligned_cols=61  Identities=20%  Similarity=0.233  Sum_probs=50.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+    |...+++.++
T Consensus         1 ml~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   65 (255)
T PRK11248          1 MLQISHLYADYGG----------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV   65 (255)
T ss_pred             CEEEEEEEEEeCC----------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence            4789999999975          23567788999999999999999999999999999865    6566665443

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.44  E-value=1.3e-07  Score=88.84  Aligned_cols=61  Identities=21%  Similarity=0.238  Sum_probs=51.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..+
T Consensus         2 ~i~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~   66 (242)
T TIGR03411         2 ILYLEGLSVSFDG----------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL   66 (242)
T ss_pred             eEEEEeeEEEcCC----------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeec
Confidence            5789999999974          23677888999999999999999999999999999865    6666766544

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.44  E-value=1.5e-07  Score=86.77  Aligned_cols=62  Identities=19%  Similarity=0.170  Sum_probs=49.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+..         -..+.++++++.+|.+++|+|++||||||+++.|++.+    |...++..++
T Consensus         1 ~l~~~~l~~~~~~~---------~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~   66 (214)
T TIGR02673         1 MIEFHNVSKAYPGG---------VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDV   66 (214)
T ss_pred             CEEEEeeeEEeCCC---------ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence            47889999999421         13677888999999999999999999999999999865    5556655444

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.43  E-value=1.2e-07  Score=89.01  Aligned_cols=61  Identities=23%  Similarity=0.264  Sum_probs=49.1

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++|++.|+. .        ...+.++++++.+|.+++|+|++||||||+++.|++.+    |..++++.++
T Consensus         1 l~~~~l~~~~~~-~--------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   65 (241)
T cd03256           1 IEVENLSKTYPN-G--------KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDI   65 (241)
T ss_pred             CEEeeEEEecCC-c--------cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEec
Confidence            467899999964 1        13577888999999999999999999999999999865    5566666544

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.43  E-value=1.4e-07  Score=100.62  Aligned_cols=64  Identities=28%  Similarity=0.200  Sum_probs=55.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      .++++|++++|+...        ...+++.+++++.|+.|+|+|.|||||||++|+|.+.+    |...+|+-++.
T Consensus       471 ~I~~~nvsf~y~~~~--------~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~  538 (709)
T COG2274         471 EIEFENVSFRYGPDD--------PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN  538 (709)
T ss_pred             eEEEEEEEEEeCCCC--------cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence            367899999999855        24677888999999999999999999999999999977    77778777663

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.43  E-value=1.1e-07  Score=89.90  Aligned_cols=60  Identities=28%  Similarity=0.288  Sum_probs=49.2

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++|++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 i~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i   64 (252)
T TIGR03005         1 VRFSDVTKRFGI----------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQL   64 (252)
T ss_pred             CEEEEEEEEeCC----------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence            468899999974          23677888999999999999999999999999999865    5556665443

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.43  E-value=1.5e-07  Score=88.86  Aligned_cols=61  Identities=23%  Similarity=0.268  Sum_probs=50.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~   72 (433)
                      .+++++|++.|+.          ...++++++++++|.+++|+|++||||||+.+.|++.+         |..++++.++
T Consensus         3 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~   72 (250)
T PRK14240          3 KISVKDLDLFYGD----------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI   72 (250)
T ss_pred             eEEEEEEEEEECC----------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence            5789999999975          23677888999999999999999999999999999842         5456665444

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.43  E-value=1.5e-07  Score=87.45  Aligned_cols=65  Identities=22%  Similarity=0.147  Sum_probs=51.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+....      ....++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 ~l~~~~v~~~~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   69 (228)
T cd03257           1 LLEVKNLSVSFPTGGG------SVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDL   69 (228)
T ss_pred             CeEEEeeeEeccCCCc------ceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence            4678999999975210      013677888999999999999999999999999999865    5556665443

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.42  E-value=2.1e-07  Score=83.20  Aligned_cols=102  Identities=20%  Similarity=0.145  Sum_probs=78.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      |+++.++.++|..     +...+...++.+++++.++..|.++|.+||||||++..+++.+    |..+|++-++.....
T Consensus         1 Mi~~~~~~~~f~~-----g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~   75 (263)
T COG1101           1 MISLSNATKTFFK-----GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV   75 (263)
T ss_pred             CcccccceeeecC-----CChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCH
Confidence            4678888999975     3345666888999999999999999999999999999999988    888999888875433


Q ss_pred             cc-ccccCCCCCCc--CChhHHHHHHHHHHHhhh
Q psy16778         78 ID-KMSAKQPLNDE--DRRPWLNNINRIIHQLNV  108 (433)
Q Consensus        78 ~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  108 (433)
                      +. ......+||++  ...+.++..|+.+.....
T Consensus        76 ~~RA~~larVfQdp~~gt~~~lTieENl~la~~R  109 (263)
T COG1101          76 AKRANLLARVFQDPLAGTAPELTIEENLALAESR  109 (263)
T ss_pred             HHHhhHHHHHhcchhhCCcccccHHHHHHHHHhc
Confidence            32 23345677774  445667777887776554

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.42  E-value=1.7e-07  Score=87.03  Aligned_cols=60  Identities=22%  Similarity=0.156  Sum_probs=49.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      ++++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..
T Consensus         7 ~i~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~   70 (225)
T PRK10247          7 LLQLQNVGYLAGD----------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGED   70 (225)
T ss_pred             eEEEeccEEeeCC----------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE
Confidence            5789999999975          23677888999999999999999999999999999865    555555543

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.42  E-value=2e-07  Score=88.20  Aligned_cols=61  Identities=23%  Similarity=0.298  Sum_probs=50.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+         |...+++.++
T Consensus         4 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~   73 (252)
T PRK14272          4 LLSAQDVNIYYGD----------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI   73 (252)
T ss_pred             EEEEeeeEEEECC----------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEc
Confidence            5788999999975          23678888999999999999999999999999999864         5556665444

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.42  E-value=1.4e-07  Score=90.25  Aligned_cols=61  Identities=25%  Similarity=0.247  Sum_probs=51.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      |+++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 ml~~~~l~~~~~~----------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   65 (271)
T PRK13638          1 MLATSDLWFRYQD----------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL   65 (271)
T ss_pred             CeEEEEEEEEcCC----------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEc
Confidence            4789999999975          23677888999999999999999999999999999865    6666766554

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.42  E-value=1.7e-07  Score=89.04  Aligned_cols=51  Identities=24%  Similarity=0.206  Sum_probs=45.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+.          ...+.+.++++.+|.+++|+|++||||||+++.|++.+
T Consensus        12 ~l~i~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         12 VYQINGMNLWYGQ----------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             eEEEeeEEEEECC----------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            6789999999975          34677788999999999999999999999999999864

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.42  E-value=2e-07  Score=85.84  Aligned_cols=58  Identities=24%  Similarity=0.193  Sum_probs=47.7

Q ss_pred             ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778          4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      ++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.+
T Consensus         1 ~~~~l~~~~~~----------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~   62 (213)
T cd03235           1 EVEDLTVSYGG----------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKP   62 (213)
T ss_pred             CcccceeEECC----------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCcc
Confidence            46889999975          23677888999999999999999999999999999865    555565543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.41  E-value=1e-07  Score=90.33  Aligned_cols=58  Identities=21%  Similarity=0.110  Sum_probs=48.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDG   69 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~   69 (433)
                      .++++||++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...++.
T Consensus        12 ~l~i~~l~~~~~~----------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g   73 (257)
T PRK11247         12 PLLLNAVSKRYGE----------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGT   73 (257)
T ss_pred             cEEEEEEEEEECC----------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence            4788999999975          23567788999999999999999999999999999865    4445544

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.41  E-value=1.5e-07  Score=89.59  Aligned_cols=51  Identities=18%  Similarity=0.132  Sum_probs=45.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         4 ~l~~~nl~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (262)
T PRK09984          4 IIRVEKLAKTFNQ----------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI   54 (262)
T ss_pred             EEEEeeEEEEeCC----------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            6889999999975          23677888999999999999999999999999999876

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.41  E-value=2.5e-07  Score=84.46  Aligned_cols=54  Identities=26%  Similarity=0.178  Sum_probs=44.8

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++||+|.|+.-+      .+...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus         4 ~~~~~~~~~~~~~~------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233           4 LSWRNISFTTGKGR------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             EEEEccEEEeccCC------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence            67899999996411      1123677888999999999999999999999999999964

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.41  E-value=2.1e-07  Score=87.50  Aligned_cols=60  Identities=22%  Similarity=0.204  Sum_probs=49.1

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL------GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id~D~~   72 (433)
                      +++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+      |...+++.++
T Consensus         1 l~~~~l~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~   66 (243)
T TIGR01978         1 LKIKDLHVSVED----------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDL   66 (243)
T ss_pred             CeEeeEEEEECC----------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEec
Confidence            468899999974          23677888999999999999999999999999999862      5556665544

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.40  E-value=2e-07  Score=88.63  Aligned_cols=51  Identities=20%  Similarity=0.206  Sum_probs=44.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++++++++.|+.          ...+.+.++++.+|.+++|+|++||||||+++.|++.+
T Consensus        13 ~l~~~~l~~~~~~----------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         13 KIQVRNLNFYYGK----------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             eEEEEEEEEEeCC----------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            4688999999975          23677888999999999999999999999999999864

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.40  E-value=1.8e-07  Score=87.99  Aligned_cols=61  Identities=25%  Similarity=0.313  Sum_probs=49.1

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++|++.|+...         ..+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 l~~~~l~~~~~~~~---------~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   65 (242)
T cd03295           1 IEFENVTKRYGGGK---------KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDI   65 (242)
T ss_pred             CEEEEEEEEeCCcc---------eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEc
Confidence            46789999997411         2566777999999999999999999999999999866    6666766554

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.40  E-value=1.9e-07  Score=86.87  Aligned_cols=50  Identities=22%  Similarity=0.156  Sum_probs=43.8

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus         1 i~~~~l~~~~~~----------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260           1 IELRDLNVYYGD----------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CEEEEEEEEcCC----------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            467899999975          23677788999999999999999999999999999975

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.39  E-value=2.3e-07  Score=87.73  Aligned_cols=61  Identities=20%  Similarity=0.222  Sum_probs=50.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+         |...+++.++
T Consensus         4 ~l~~~~l~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i   73 (251)
T PRK14270          4 KMESKNLNLWYGE----------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI   73 (251)
T ss_pred             EEEEEEeEEEECC----------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEec
Confidence            6788999999975          23677888999999999999999999999999999853         5566666554

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=1.8e-07  Score=87.29  Aligned_cols=59  Identities=20%  Similarity=0.164  Sum_probs=48.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+..            ..++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 ~l~~~~l~~~~~~~------------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   63 (232)
T PRK10771          1 MLKLTDITWLYHHL------------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDH   63 (232)
T ss_pred             CeEEEEEEEEECCc------------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeec
Confidence            47889999999741            12567889999999999999999999999999875    6667766554

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.39  E-value=9.9e-07  Score=78.83  Aligned_cols=61  Identities=26%  Similarity=0.152  Sum_probs=47.9

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      +++++++++|+...        ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..
T Consensus         1 i~~~~~~~~~~~~~--------~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~   65 (178)
T cd03247           1 LSINNVSFSYPEQE--------QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVP   65 (178)
T ss_pred             CEEEEEEEEeCCCC--------ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEE
Confidence            46789999996521        12466777899999999999999999999999999975    555565543

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=1.7e-07  Score=87.80  Aligned_cols=61  Identities=20%  Similarity=0.246  Sum_probs=50.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         5 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~   69 (237)
T PRK11614          5 MLSFDKVSAHYGK----------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI   69 (237)
T ss_pred             EEEEEeEEEeeCC----------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEec
Confidence            5788999999974          23677788999999999999999999999999999865    5556665544

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.39  E-value=1.6e-07  Score=89.54  Aligned_cols=61  Identities=25%  Similarity=0.319  Sum_probs=50.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         7 ~l~i~~l~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~   71 (265)
T PRK10253          7 RLRGEQLTLGYGK----------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI   71 (265)
T ss_pred             EEEEEEEEEEECC----------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEh
Confidence            5789999999975          23678888999999999999999999999999999976    5556655443

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.38  E-value=2.1e-07  Score=87.93  Aligned_cols=61  Identities=20%  Similarity=0.263  Sum_probs=49.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.++|++.+         |..++++.++
T Consensus         3 ~l~~~~l~~~~~~----------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~   72 (250)
T PRK14262          3 IIEIENFSAYYGE----------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDI   72 (250)
T ss_pred             eEEEEeeEEEeCC----------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEc
Confidence            5789999999974          23567788999999999999999999999999999743         4455655443

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.38  E-value=2.1e-07  Score=88.42  Aligned_cols=61  Identities=28%  Similarity=0.248  Sum_probs=51.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++
T Consensus         2 ~l~~~~l~~~~~~----------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~   66 (258)
T PRK13548          2 MLEARNLSVRLGG----------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL   66 (258)
T ss_pred             eEEEEeEEEEeCC----------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc
Confidence            5789999999975          23677888999999999999999999999999999965    6666665543

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.38  E-value=2.1e-06  Score=76.14  Aligned_cols=62  Identities=29%  Similarity=0.220  Sum_probs=49.3

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+...        -..+.++++++.+|.+++|+|++||||||+.+.|++.+    |..++++..+
T Consensus         1 l~~~~l~~~~~~~~--------~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~   66 (171)
T cd03228           1 IEFKNVSFSYPGRP--------KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDL   66 (171)
T ss_pred             CEEEEEEEEcCCCC--------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEh
Confidence            46789999997521        12567778999999999999999999999999999976    5566665443

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.38  E-value=1.7e-06  Score=77.19  Aligned_cols=46  Identities=26%  Similarity=0.317  Sum_probs=38.6

Q ss_pred             ccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          6 FGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+|++.||.          ...+.+ .+++.+|.+++|+|++||||||+.+.|++.+
T Consensus         4 ~~l~~~~~~----------~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222           4 PDCVKRYGV----------FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCeEEEECC----------EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            578999986          334445 3788999999999999999999999999865

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.38  E-value=1.7e-07  Score=92.01  Aligned_cols=89  Identities=13%  Similarity=0.063  Sum_probs=61.0

Q ss_pred             ccccccceeeeccCC-ccc--eeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCc
Q psy16778          2 AVSNFGNWRYWGMWP-PQY--VVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHP   74 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~   74 (433)
                      +++++||++.|+... ..+  ...-....+.++++++.+|.+++|+|++||||||+++.|++.+    |..++++.++..
T Consensus         8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~   87 (331)
T PRK15079          8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG   87 (331)
T ss_pred             eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence            578999999996310 000  0000134678899999999999999999999999999999966    666777766532


Q ss_pred             cc--cc--cccccCCCCCCc
Q psy16778         75 QS--NI--DKMSAKQPLNDE   90 (433)
Q Consensus        75 ~~--~~--~~~~~~~~~~~~   90 (433)
                      ..  ..  .....++.+|++
T Consensus        88 ~~~~~~~~~r~~i~~v~Q~~  107 (331)
T PRK15079         88 MKDDEWRAVRSDIQMIFQDP  107 (331)
T ss_pred             CCHHHHHHHhCceEEEecCc
Confidence            11  00  112456777775

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.38  E-value=2.4e-07  Score=87.68  Aligned_cols=50  Identities=20%  Similarity=0.182  Sum_probs=44.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +++++++++.|+.          ...++++++++.+|.+++|+|++||||||+++.|++.
T Consensus         6 ~i~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14261          6 ILSTKNLNLWYGE----------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRM   55 (253)
T ss_pred             eEEEeeeEEEECC----------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            6789999999975          2367788899999999999999999999999999974

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=2.2e-07  Score=88.65  Aligned_cols=61  Identities=23%  Similarity=0.089  Sum_probs=50.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+    |..++++.++
T Consensus        11 ~l~i~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   75 (265)
T PRK10575         11 TFALRNVSFRVPG----------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPL   75 (265)
T ss_pred             eEEEeeEEEEECC----------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEeh
Confidence            4789999999975          23577888999999999999999999999999999865    5566665443

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.37  E-value=6.7e-06  Score=73.57  Aligned_cols=36  Identities=39%  Similarity=0.475  Sum_probs=31.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCcc
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQ   75 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~   75 (433)
                      +|+|.|.+||||||+++.|++.+     ++.+++.|+++..
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~   41 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP   41 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence            48999999999999999999986     4578999999854

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=1.9e-07  Score=89.81  Aligned_cols=67  Identities=19%  Similarity=0.137  Sum_probs=52.4

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      |.+++++|++.|+....     .....+.++++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++
T Consensus         1 ~~l~~~~l~~~~~~~~~-----~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i   71 (280)
T PRK13649          1 MGINLQNVSYTYQAGTP-----FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLI   71 (280)
T ss_pred             CeEEEEEEEEEcCCCCc-----cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence            77999999999964110     0012567788999999999999999999999999999865    6666766544

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.37  E-value=2.2e-07  Score=85.80  Aligned_cols=64  Identities=23%  Similarity=0.146  Sum_probs=49.4

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++|++.|+...      .....+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 l~~~~l~~~~~~~~------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~   68 (218)
T cd03255           1 IELKNLSKTYGGGG------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDI   68 (218)
T ss_pred             CeEeeeEEEecCCC------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEeh
Confidence            46889999997421      0012567788999999999999999999999999999876    5556665444

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.36  E-value=3e-07  Score=86.96  Aligned_cols=59  Identities=32%  Similarity=0.240  Sum_probs=49.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGD   70 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D   70 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.
T Consensus         3 ~l~~~~l~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~   65 (253)
T TIGR02323         3 LLQVSGLSKSYGG----------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMR   65 (253)
T ss_pred             eEEEeeeEEEeCC----------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecc
Confidence            5789999999975          23577888999999999999999999999999999976    55566553

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.36  E-value=3.4e-07  Score=86.40  Aligned_cols=51  Identities=22%  Similarity=0.112  Sum_probs=45.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus         3 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (249)
T PRK14253          3 KFNIENLDLFYGE----------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMN   53 (249)
T ss_pred             eEEEeccEEEECC----------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            7899999999975          34678888999999999999999999999999999864

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=98.36  E-value=5.6e-06  Score=70.31  Aligned_cols=162  Identities=12%  Similarity=0.072  Sum_probs=95.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCcccccccccc--CCCCCC---cCChhHH-----------
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSA--KQPLND---EDRRPWL-----------   96 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~--~~~~~~---~~~~~~~-----------   96 (433)
                      .+++.+|+|-|.+.||||+++..+-....  +.++-.|.+.+...-.....  |+....   ++..+++           
T Consensus        20 ~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~   99 (205)
T COG3896          20 MPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELA   99 (205)
T ss_pred             CCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHH
Confidence            57889999999999999999999988663  44555554432111111122  222211   1222221           


Q ss_pred             -HHHHHHHHHhhhCCCcEEEEcCcccHHHH-HHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccC
Q psy16778         97 -NNINRIIHQLNVDNLTGVLVCSALRRNYR-DIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEE  172 (433)
Q Consensus        97 -~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~-~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~  172 (433)
                       ......+.....+|.+++.|.-.-.+.+. +-++-...  +..|-+.+|.|++.+|...|.++...  ...-..+.-+.
T Consensus       100 ~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~dR~pG--~~rg~~r~vHa  177 (205)
T COG3896         100 MHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRGDRHPG--WNRGSARAVHA  177 (205)
T ss_pred             HHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcCCcCcc--hhhhhHHHhcC
Confidence             11122334445677777777665444442 22222212  67888999999999998777643221  12223333343


Q ss_pred             CCCCCCCCeEEEccC-CCHHHHHHHHhcCCC
Q psy16778        173 PDPLVEPDVRTVSVN-EPLEGIVSKSAIMPP  202 (433)
Q Consensus       173 ~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~  202 (433)
                      ...    -++.+|++ .++.|+...|.++++
T Consensus       178 ~~~----YDlevDTS~~tp~EcAr~i~~r~q  204 (205)
T COG3896         178 DAE----YDLEVDTSATTPHECAREIHERYQ  204 (205)
T ss_pred             Ccc----eeeeecccCCCHHHHHHHHHHHhc
Confidence            332    57999999 999999999987653

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.36  E-value=2.2e-07  Score=85.54  Aligned_cols=87  Identities=15%  Similarity=0.098  Sum_probs=58.8

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI   78 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~   78 (433)
                      +++++|++.|+.            .+.+.++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++..... 
T Consensus         1 ~~~~~l~~~~~~------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-   67 (213)
T TIGR01277         1 LALDKVRYEYEH------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP-   67 (213)
T ss_pred             CeEEeeeEEeCC------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCCh-
Confidence            468899999963            123567889999999999999999999999999976    666776655432111 


Q ss_pred             cccccCCCCCCcCChhHHHHHHHH
Q psy16778         79 DKMSAKQPLNDEDRRPWLNNINRI  102 (433)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~  102 (433)
                      .....++.+++.......+..+++
T Consensus        68 ~~~~i~~v~q~~~~~~~~t~~en~   91 (213)
T TIGR01277        68 YQRPVSMLFQENNLFAHLTVRQNI   91 (213)
T ss_pred             hccceEEEeccCccCCCCcHHHHH
Confidence            112345666664433333444444

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.36  E-value=2.3e-07  Score=88.65  Aligned_cols=61  Identities=25%  Similarity=0.229  Sum_probs=50.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         7 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   71 (269)
T PRK11831          7 LVDMRGVSFTRGN----------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENI   71 (269)
T ss_pred             eEEEeCeEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEc
Confidence            5789999999975          23567788999999999999999999999999999875    5556665443

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.36  E-value=2.5e-07  Score=82.72  Aligned_cols=60  Identities=28%  Similarity=0.317  Sum_probs=48.2

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+.          ...+.+.++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 i~~~~l~~~~~~----------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   64 (178)
T cd03229           1 LELKNVSKRYGQ----------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDL   64 (178)
T ss_pred             CEEEEEEEEECC----------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc
Confidence            467899999975          23567778999999999999999999999999999865    5555655433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.36  E-value=1.7e-07  Score=92.86  Aligned_cols=122  Identities=20%  Similarity=0.215  Sum_probs=76.9

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc-----cccccCCCCCCcCChhHHH
Q psy16778         27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI-----DKMSAKQPLNDEDRRPWLN   97 (433)
Q Consensus        27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~   97 (433)
                      .+.++++++.+|++++|+|++||||||+.++|++.+    |..++++.++......     .....++.+|.....+..+
T Consensus         8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T   87 (363)
T TIGR01186         8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT   87 (363)
T ss_pred             eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence            567788999999999999999999999999999976    7778888766532111     0234678888766666556


Q ss_pred             HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         98 NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        98 ~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      ..+++.......+..    .........+.+...+  +--+++..+..+....++|-
T Consensus        88 V~eNi~~~~~~~~~~----~~~~~~~~~~~l~~vg--L~~~~~~~p~~LSGGq~QRV  138 (363)
T TIGR01186        88 ILQNTSLGPELLGWP----EQERKEKALELLKLVG--LEEYEHRYPDELSGGMQQRV  138 (363)
T ss_pred             HHHHHHHHHHHcCCC----HHHHHHHHHHHHHhcC--CchhhhCChhhCCHHHHHHH
Confidence            666655433222210    0000122233444332  34456667777777776664

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.35  E-value=2.4e-07  Score=85.18  Aligned_cols=76  Identities=20%  Similarity=0.155  Sum_probs=53.9

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI   78 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~   78 (433)
                      ++++++++.|+..            ..+.++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++..... 
T Consensus         1 i~~~~l~~~~~~~------------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~-   67 (211)
T cd03298           1 VRLDKIRFSYGEQ------------PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP-   67 (211)
T ss_pred             CEEEeEEEEeCCE------------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH-
Confidence            4678999999741            12677889999999999999999999999999876    666776655432111 


Q ss_pred             cccccCCCCCCcC
Q psy16778         79 DKMSAKQPLNDED   91 (433)
Q Consensus        79 ~~~~~~~~~~~~~   91 (433)
                      .....++.+++..
T Consensus        68 ~~~~i~~~~q~~~   80 (211)
T cd03298          68 ADRPVSMLFQENN   80 (211)
T ss_pred             hHccEEEEecccc
Confidence            1123456666543

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.35  E-value=3.3e-07  Score=84.16  Aligned_cols=61  Identities=25%  Similarity=0.140  Sum_probs=48.5

Q ss_pred             ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++.|+...        ...+.++++++.+|.+++|+|++||||||+++.|++.+    |...+++.++
T Consensus         1 ~~~~l~~~~~~~~--------~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   65 (211)
T cd03225           1 ELKNLSFSYPDGA--------RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDL   65 (211)
T ss_pred             CceeEEEecCCCC--------eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEc
Confidence            4678999997421        23577888999999999999999999999999999865    5566665443

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=2.4e-07  Score=89.31  Aligned_cols=67  Identities=21%  Similarity=0.216  Sum_probs=53.2

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      |.+++++|++.|+...+     .+-..++++++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++
T Consensus         1 ~~l~~~~l~~~y~~~~~-----~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i   71 (286)
T PRK13646          1 MTIRFDNVSYTYQKGTP-----YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITI   71 (286)
T ss_pred             CEEEEEEEEEEECCCCc-----cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence            77999999999963110     0013677888999999999999999999999999999865    6667766554

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.35  E-value=2.7e-07  Score=91.59  Aligned_cols=88  Identities=16%  Similarity=0.139  Sum_probs=58.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc--
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ--   75 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~--   75 (433)
                      |+++ +|++.|+...            .++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++...  
T Consensus         1 ~l~~-~l~k~~~~~~------------~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~   67 (352)
T PRK11144          1 MLEL-NFKQQLGDLC------------LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEK   67 (352)
T ss_pred             CeEE-EEEEEeCCEE------------EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccc
Confidence            4677 9999997511            1566889999999999999999999999999965    6566666544210  


Q ss_pred             ---ccccccccCCCCCCcCChhHHHHHHHH
Q psy16778         76 ---SNIDKMSAKQPLNDEDRRPWLNNINRI  102 (433)
Q Consensus        76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (433)
                         ........++.+|+....+.++..+++
T Consensus        68 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl   97 (352)
T PRK11144         68 GICLPPEKRRIGYVFQDARLFPHYKVRGNL   97 (352)
T ss_pred             ccccchhhCCEEEEcCCcccCCCCcHHHHH
Confidence               000122346677765444434444443

>KOG0058|consensus

Probab=98.35  E-value=3.4e-07  Score=95.15  Aligned_cols=64  Identities=27%  Similarity=0.231  Sum_probs=55.6

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      ++++||+|.|...+       +...+++++++++.|++++|+||||+||||++.+|-+-|    |...+|+-++.
T Consensus       466 IeF~~VsFaYP~Rp-------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~  533 (716)
T KOG0058|consen  466 IEFEDVSFAYPTRP-------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPIS  533 (716)
T ss_pred             EEEEEeeeecCCCC-------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehh
Confidence            67899999997633       234788999999999999999999999999999999877    88888888875

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.35  E-value=2.7e-07  Score=87.57  Aligned_cols=61  Identities=23%  Similarity=0.300  Sum_probs=50.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+    |...+++.++
T Consensus         5 ~l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~   69 (257)
T PRK10619          5 KLNVIDLHKRYGE----------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTI   69 (257)
T ss_pred             cEEEeeeEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence            5789999999975          23677788999999999999999999999999999976    5556655443

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.35  E-value=2.9e-07  Score=90.57  Aligned_cols=84  Identities=14%  Similarity=-0.018  Sum_probs=58.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--------CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL--------GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l--------g~~~id~D~~~   73 (433)
                      +++++||++.|+...      -....+.++++++.+|.+++|+|+|||||||+++.|++.+        |...+++.++.
T Consensus         3 ~L~v~~l~~~y~~~~------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~   76 (330)
T PRK15093          3 LLDIRNLTIEFKTSD------GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLL   76 (330)
T ss_pred             eEEEeeeEEEEeCCC------CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECC
Confidence            689999999995311      0134778899999999999999999999999999999975        44555554442


Q ss_pred             ccc--cc---cccccCCCCCCcC
Q psy16778         74 PQS--NI---DKMSAKQPLNDED   91 (433)
Q Consensus        74 ~~~--~~---~~~~~~~~~~~~~   91 (433)
                      ...  ..   .....++.+|++.
T Consensus        77 ~~~~~~~~~~~~~~i~~v~Q~~~   99 (330)
T PRK15093         77 RLSPRERRKLVGHNVSMIFQEPQ   99 (330)
T ss_pred             cCCHHHHHHHhCCCEEEEecCcc
Confidence            211  00   1123567777753

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.34  E-value=3.2e-07  Score=83.20  Aligned_cols=66  Identities=32%  Similarity=0.288  Sum_probs=49.8

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL------GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id~D~~   72 (433)
                      +++++|++.|+.+.    ...+...++++++++.+|.+++|+|++||||||+.+.|++.+      |...+++.++
T Consensus         4 l~~~~ls~~~~~~~----~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~   75 (194)
T cd03213           4 LSFRNLTVTVKSSP----SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL   75 (194)
T ss_pred             EEEEeeEEEEecCC----CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeC
Confidence            67899999997420    000023677888999999999999999999999999999865      4445555443

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PLN02772 guanylate kinase

Probab=98.34  E-value=8.7e-06  Score=80.34  Aligned_cols=161  Identities=14%  Similarity=0.160  Sum_probs=82.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCCCcCCh-----------------hHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRR-----------------PWL   96 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~   96 (433)
                      ...+.|+|+||+|||||||.+.|.+.+.  +.+.-....+.......-...+-|.....+                 .++
T Consensus       133 ~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~Y  212 (398)
T PLN02772        133 NAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLY  212 (398)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCccc
Confidence            3567999999999999999999988652  222222222211110000011222221000                 011


Q ss_pred             HHHHHHHHHhhhCCCcEEEEcCcc-cHHHHHHHHhcCCeEEEEE-EcCHHHHHHHHHHhhCCCCCHHhHHHHHhhcc-CC
Q psy16778         97 NNINRIIHQLNVDNLTGVLVCSAL-RRNYRDIIRNNNRVVFIYL-KAEFGVILSRLQKRAEHFMPADLLESQFQTLE-EP  173 (433)
Q Consensus        97 ~~~~~~~~~~~~~~~~~Vi~~~~~-~~~~~~~l~~~~~~~vv~L-~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~-~~  173 (433)
                      -.-.+.+.....+|+.+|++.... ....++..   ...++|++ ..+.+++.+|+..|+..  ..+.+..+++..+ +.
T Consensus       213 GTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~---l~~v~IFI~PPSlEeLe~RL~~RGte--seE~I~kRL~~A~~Ei  287 (398)
T PLN02772        213 GTSIEAVEVVTDSGKRCILDIDVQGARSVRASS---LEAIFIFICPPSMEELEKRLRARGTE--TEEQIQKRLRNAEAEL  287 (398)
T ss_pred             cccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhc---CCeEEEEEeCCCHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHH
Confidence            112334556667788888886542 22222222   11244444 55689999999998642  2333333332221 11


Q ss_pred             CC--CCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        174 DP--LVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       174 ~~--~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      ..  +....+++|.++ ++++..+++...+.
T Consensus       288 ~~~~~~~~fD~vIvND-dLe~A~~~L~~iL~  317 (398)
T PLN02772        288 EQGKSSGIFDHILYND-NLEECYKNLKKLLG  317 (398)
T ss_pred             hhccccCCCCEEEECC-CHHHHHHHHHHHHh
Confidence            00  011245667676 78888777776653

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.34  E-value=3.9e-07  Score=86.23  Aligned_cols=51  Identities=25%  Similarity=0.214  Sum_probs=44.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         6 ~l~~~~l~~~~~~----------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242          6 KMEARGLSFFYGD----------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             EEEEeeeEEEECC----------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            5789999999975          23677888999999999999999999999999999753

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.33  E-value=3.5e-07  Score=78.80  Aligned_cols=58  Identities=26%  Similarity=0.167  Sum_probs=50.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+.+.+++|+|..|. |++..++  .+.+.+++.+.|+.++|-|+|||||||+.|.|...|
T Consensus         4 ~l~v~~~~KtFtlH~-q~Gi~Lp--V~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY   61 (235)
T COG4778           4 PLNVSNVSKTFTLHQ-QGGVRLP--VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY   61 (235)
T ss_pred             eeeeecchhheEeee-cCCEEee--eeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc
Confidence            467889999998765 5666666  888999999999999999999999999999998876

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.33  E-value=3.6e-07  Score=87.24  Aligned_cols=70  Identities=21%  Similarity=0.211  Sum_probs=51.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+... ..+..-....++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         4 ~l~~~~l~~~~~~~~-~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   77 (267)
T PRK15112          4 LLEVRNLSKTFRYRT-GWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL   77 (267)
T ss_pred             eEEEeceEEEecCCC-CcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC
Confidence            578999999996310 000000123677888999999999999999999999999999976    5566665444

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.33  E-value=3.3e-07  Score=84.52  Aligned_cols=61  Identities=20%  Similarity=0.121  Sum_probs=50.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++.++++++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..+
T Consensus        11 ~l~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i   75 (214)
T PRK13543         11 LLAAHALAFSRNE----------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA   75 (214)
T ss_pred             eEEEeeEEEecCC----------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEc
Confidence            4788999999975          23677888999999999999999999999999999865    5566665444

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.33  E-value=3e-07  Score=89.36  Aligned_cols=64  Identities=23%  Similarity=0.149  Sum_probs=50.9

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeC
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDG   69 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~   69 (433)
                      |.+++++|++.|+....     .....++++++++.+|.+++|+|++||||||+++.|++.+    |...++.
T Consensus         1 m~i~~~~l~~~y~~~~~-----~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g   68 (305)
T PRK13651          1 MQIKVKNIVKIFNKKLP-----TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIF   68 (305)
T ss_pred             CEEEEEEEEEEECCCCC-----ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEec
Confidence            56899999999964210     0113677888999999999999999999999999999865    6666654

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.33  E-value=3.8e-07  Score=85.15  Aligned_cols=60  Identities=22%  Similarity=0.308  Sum_probs=50.3

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +.++++++.|+.          ...+++.++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 l~~~~l~~~~~~----------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~   64 (232)
T cd03300           1 IELENVSKFYGG----------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI   64 (232)
T ss_pred             CEEEeEEEEeCC----------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc
Confidence            467899999975          23678888999999999999999999999999999976    6666766554

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.33  E-value=3.3e-07  Score=87.03  Aligned_cols=51  Identities=24%  Similarity=0.257  Sum_probs=45.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         4 ~l~i~~v~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241          4 RIDVKDLNIYYGS----------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             cEEEeeEEEEECC----------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            6889999999975          34677888999999999999999999999999999853

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.33  E-value=3.6e-07  Score=86.16  Aligned_cols=50  Identities=32%  Similarity=0.244  Sum_probs=44.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ++++++|++.|+.          ...+++.++++.+|.+++|+|++||||||+.+.|++.
T Consensus         1 ~i~~~nl~~~~~~----------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580          1 MLSIKDLHVSVED----------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             CeEEEEEEEEeCC----------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999975          2367788899999999999999999999999999986

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.33  E-value=3.6e-07  Score=85.02  Aligned_cols=65  Identities=23%  Similarity=0.108  Sum_probs=51.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+....      ....+.++++++.+|.+++|+|++||||||+++.|++.+    |..++++..+
T Consensus         6 ~l~~~~l~~~~~~~~~------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~   74 (228)
T PRK10584          6 IVEVHHLKKSVGQGEH------ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPL   74 (228)
T ss_pred             eEEEeeeEEEccCCCc------ceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEc
Confidence            5789999999974210      012577888999999999999999999999999999976    6666666544

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.32  E-value=3.8e-07  Score=86.21  Aligned_cols=61  Identities=25%  Similarity=0.270  Sum_probs=49.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH---------hCCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR---------LGVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~---------lg~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.         -|...+++.++
T Consensus         5 ~l~~~~l~~~~~~----------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~   74 (252)
T PRK14239          5 ILQVSDLSVYYNK----------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI   74 (252)
T ss_pred             eEEEEeeEEEECC----------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEEC
Confidence            5789999999975          2367788899999999999999999999999999874         25555655444

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.32  E-value=2.8e-07  Score=88.92  Aligned_cols=85  Identities=19%  Similarity=0.124  Sum_probs=60.7

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS   76 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~   76 (433)
                      |++++++|++.|+....     ..-..+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++....
T Consensus         1 ~~l~~~~l~~~y~~~~~-----~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~   75 (287)
T PRK13637          1 MSIKIENLTHIYMEGTP-----FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK   75 (287)
T ss_pred             CEEEEEEEEEECCCCCc-----cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcC
Confidence            57899999999964210     0013677888999999999999999999999999999866    66777776553211


Q ss_pred             ---cccccccCCCCCCc
Q psy16778         77 ---NIDKMSAKQPLNDE   90 (433)
Q Consensus        77 ---~~~~~~~~~~~~~~   90 (433)
                         .......++.+|++
T Consensus        76 ~~~~~~~~~ig~v~q~~   92 (287)
T PRK13637         76 VKLSDIRKKVGLVFQYP   92 (287)
T ss_pred             ccHHHHhhceEEEecCc
Confidence               01122446777764

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.32  E-value=2.4e-07  Score=96.51  Aligned_cols=61  Identities=20%  Similarity=0.218  Sum_probs=52.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.++|++.+    |...+++.++
T Consensus         4 ~i~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~   68 (501)
T PRK10762          4 LLQLKGIDKAFPG----------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEV   68 (501)
T ss_pred             eEEEeeeEEEeCC----------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC
Confidence            5889999999975          23677888999999999999999999999999999976    6667766554

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.32  E-value=9.1e-07  Score=80.25  Aligned_cols=34  Identities=35%  Similarity=0.454  Sum_probs=28.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC---------CeEEeCCCCC
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLG---------VKFIDGDHLH   73 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg---------~~~id~D~~~   73 (433)
                      +|+|+|++||||||+++.|+..++         ..++..|...
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~   43 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY   43 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence            689999999999999999999995         3466677665

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.32  E-value=3.7e-07  Score=86.59  Aligned_cols=51  Identities=25%  Similarity=0.221  Sum_probs=45.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.||.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus        10 ~i~~~~~~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~   60 (257)
T PRK14246         10 VFNISRLYLYIND----------KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI   60 (257)
T ss_pred             heeeeeEEEecCC----------ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            5788999999986          34678888999999999999999999999999999865

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.32  E-value=3.9e-07  Score=86.09  Aligned_cols=51  Identities=22%  Similarity=0.142  Sum_probs=45.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus         4 ~l~~~~l~~~~~~----------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251          4 IISAKDVHLSYGN----------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             eEEEEeeEEEECC----------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            6789999999975          23677888999999999999999999999999999864

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.31  E-value=5.1e-07  Score=86.03  Aligned_cols=51  Identities=20%  Similarity=0.168  Sum_probs=44.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus        10 ~l~i~~v~~~~~~----------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   60 (264)
T PRK14243         10 VLRTENLNVYYGS----------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLN   60 (264)
T ss_pred             EEEEeeeEEEECC----------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            5789999999975          23577888999999999999999999999999999753

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.31  E-value=3.7e-07  Score=82.86  Aligned_cols=60  Identities=20%  Similarity=0.071  Sum_probs=48.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+...          .++ +++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++
T Consensus         1 ~l~~~~l~~~~~~~~----------l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i   64 (195)
T PRK13541          1 MLSLHQLQFNIEQKN----------LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI   64 (195)
T ss_pred             CeEEEEeeEEECCcE----------EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCccc
Confidence            478899999996421          233 66889999999999999999999999999975    6667766544

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=6.8e-07  Score=89.89  Aligned_cols=63  Identities=22%  Similarity=0.117  Sum_probs=52.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++||+|+|..+.        -+.+++.+++.++|+.|+|+|.+||||||+...+.+.+    |-..+++-++
T Consensus       336 ~l~~~~vsF~y~~~~--------~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~  402 (573)
T COG4987         336 ALELRNVSFTYPGQQ--------TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEI  402 (573)
T ss_pred             eeeeccceeecCCCc--------cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcCh
Confidence            468899999997755        34778888999999999999999999999999999866    5556655554

>KOG3877|consensus

Probab=98.31  E-value=9.2e-06  Score=75.10  Aligned_cols=169  Identities=18%  Similarity=0.195  Sum_probs=92.6

Q ss_pred             CCCCCCC-CeEEEEEcCCCCCHHHHHHHHHHHhCCeE---EeCCCCCcccccc---ccccCCC-----------CCCcCC
Q psy16778         31 PSGEGSP-STVFVIMGVSGSGKSTIGESLATRLGVKF---IDGDHLHPQSNID---KMSAKQP-----------LNDEDR   92 (433)
Q Consensus        31 ~~~~~~~-~~~I~l~G~~GsGKSTla~~La~~lg~~~---id~D~~~~~~~~~---~~~~~~~-----------~~~~~~   92 (433)
                      .+..+.+ .++|++-|..|||||++|+.||+.||+.+   ++.|.+.......   .+...++           +.++..
T Consensus        63 tskrf~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~  142 (393)
T KOG3877|consen   63 TSKRFHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSG  142 (393)
T ss_pred             hhhhhcccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCc
Confidence            4444444 46899999999999999999999998866   4566654221111   1111111           111211


Q ss_pred             hhH-----------HHHHHHHHHHhhhCCCcEEEEcCccc---------------HHHHH---HHHh-----cCC-eEEE
Q psy16778         93 RPW-----------LNNINRIIHQLNVDNLTGVLVCSALR---------------RNYRD---IIRN-----NNR-VVFI  137 (433)
Q Consensus        93 ~~~-----------~~~~~~~~~~~~~~~~~~Vi~~~~~~---------------~~~~~---~l~~-----~~~-~~vv  137 (433)
                      ...           +....+.+...+.-|.++|+.-+..+               .+++.   .+++     .-. -+||
T Consensus       143 dlsa~~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLVi  222 (393)
T KOG3877|consen  143 DLSAAMQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVI  222 (393)
T ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEE
Confidence            111           12334456667788889999865521               11111   1111     111 4899


Q ss_pred             EEEcCHHHHHHHHHHhhCCCCC-------HHhHHHHHhhc-cCCCCCCCCCeEEEccC--CCHHHHHHHHhcC
Q psy16778        138 YLKAEFGVILSRLQKRAEHFMP-------ADLLESQFQTL-EEPDPLVEPDVRTVSVN--EPLEGIVSKSAIM  200 (433)
Q Consensus       138 ~L~~~~e~l~~Rl~~R~~~~~~-------~~~l~~~~~~~-~~~~~~~~~~~~~Id~~--~~~ee~~~~i~~~  200 (433)
                      ||+.|...+.+++++|+....-       ...++..++.. -+-+. ..+..+..+.+  ++.+.+++.|...
T Consensus       223 Yld~Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK~~fL~e~s-~h~eiL~Ydwt~~gdt~~VVEDIErl  294 (393)
T KOG3877|consen  223 YLDTPVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYKDSFLREYS-NHSEILAYDWTKPGDTDAVVEDIERL  294 (393)
T ss_pred             EEcCCcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHHHHHHHHHh-hhhheeeeecccCCCchhHHHhhhhh
Confidence            9999999999999999754322       11222222211 00010 11234555555  7777777777543

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.31  E-value=4e-07  Score=84.47  Aligned_cols=60  Identities=23%  Similarity=0.292  Sum_probs=48.8

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+.          ...+.+.++++.+|.+++|+|++||||||+.+.|++.+    |...++...+
T Consensus         1 l~l~~v~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~   64 (223)
T TIGR03740         1 LETKNLSKRFGK----------QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPW   64 (223)
T ss_pred             CEEEeEEEEECC----------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec
Confidence            468899999975          23566777999999999999999999999999999976    6566665443

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.31  E-value=4.3e-07  Score=83.09  Aligned_cols=60  Identities=17%  Similarity=0.157  Sum_probs=47.6

Q ss_pred             ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      .++++++.|+..         ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 ~~~~l~~~~~~~---------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   64 (205)
T cd03226           1 RIENISFSYKKG---------TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI   64 (205)
T ss_pred             CcccEEEEeCCc---------CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEh
Confidence            367899999641         12567778999999999999999999999999999965    5556665443

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.31  E-value=3.1e-07  Score=88.61  Aligned_cols=67  Identities=24%  Similarity=0.221  Sum_probs=53.2

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      |++++++|++.|+....     .+...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 ~~i~~~~l~~~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~   71 (287)
T PRK13641          1 MSIKFENVDYIYSPGTP-----MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHI   71 (287)
T ss_pred             CEEEEEEEEEEcCCCCC-----ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence            67899999999974210     0013677888999999999999999999999999999865    6667766554

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.31  E-value=4.3e-07  Score=86.75  Aligned_cols=61  Identities=23%  Similarity=0.216  Sum_probs=49.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+         |...+++.++
T Consensus        21 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i   90 (268)
T PRK14248         21 ILEVKDLSIYYGE----------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI   90 (268)
T ss_pred             eEEEEEEEEEeCC----------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence            4788999999975          23677888999999999999999999999999999842         5555655444

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.31  E-value=3.6e-07  Score=87.37  Aligned_cols=51  Identities=24%  Similarity=0.156  Sum_probs=45.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         1 ml~~~nl~~~~~~----------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~   51 (272)
T PRK13547          1 MLTADHLHVARRH----------RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL   51 (272)
T ss_pred             CeEEEEEEEEECC----------EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4789999999975          23677888999999999999999999999999999864

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.30  E-value=3.4e-07  Score=87.74  Aligned_cols=80  Identities=14%  Similarity=0.050  Sum_probs=58.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS-   76 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~-   76 (433)
                      +++++++++.|+..         ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++.... 
T Consensus         4 ~l~~~~l~~~~~~~---------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~   74 (274)
T PRK13647          4 IIEVEDLHFRYKDG---------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENE   74 (274)
T ss_pred             eEEEEEEEEEeCCC---------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCH
Confidence            58899999999521         13677888999999999999999999999999999865    66677765543210 


Q ss_pred             cccccccCCCCCCc
Q psy16778         77 NIDKMSAKQPLNDE   90 (433)
Q Consensus        77 ~~~~~~~~~~~~~~   90 (433)
                      .......++.++++
T Consensus        75 ~~~~~~i~~v~q~~   88 (274)
T PRK13647         75 KWVRSKVGLVFQDP   88 (274)
T ss_pred             HHHHhhEEEEecCh
Confidence            01112346667664

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.30  E-value=3.5e-07  Score=85.72  Aligned_cols=60  Identities=22%  Similarity=0.235  Sum_probs=49.6

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+.          -..+.+.++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 i~i~~l~~~~~~----------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~   64 (237)
T TIGR00968         1 IEIANISKRFGS----------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDA   64 (237)
T ss_pred             CEEEEEEEEECC----------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc
Confidence            467899999974          23677888999999999999999999999999999865    6566666554

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.30  E-value=4.5e-07  Score=86.77  Aligned_cols=51  Identities=22%  Similarity=0.179  Sum_probs=44.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus        24 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~   74 (271)
T PRK14238         24 VFDTQNLNLWYGE----------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV   74 (271)
T ss_pred             EEEEeeeEEEECC----------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4789999999975          23567788999999999999999999999999999864

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.30  E-value=5.4e-07  Score=82.43  Aligned_cols=57  Identities=21%  Similarity=0.219  Sum_probs=47.0

Q ss_pred             cccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778          5 NFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      +++|++.|+.          -..+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.+
T Consensus         1 i~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~   61 (206)
T TIGR03608         1 LKNISKKFGD----------KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKE   61 (206)
T ss_pred             CcceEEEECC----------EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE
Confidence            4688999975          23677888999999999999999999999999999866    555666554

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.30  E-value=4.3e-07  Score=86.18  Aligned_cols=60  Identities=30%  Similarity=0.299  Sum_probs=49.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      +++++++++.|+.          -..+.++++++.+|.+++|+|++||||||+++.|++.+    |...+++.+
T Consensus         6 ~l~~~~l~~~~~~----------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~   69 (258)
T PRK11701          6 LLSVRGLTKLYGP----------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRD   69 (258)
T ss_pred             eEEEeeeEEEcCC----------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCcc
Confidence            5788999999974          12566778999999999999999999999999999975    556666654

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.30  E-value=4.3e-07  Score=86.65  Aligned_cols=51  Identities=27%  Similarity=0.238  Sum_probs=44.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus        20 ~l~~~nl~~~~~~----------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         20 ALSTKDLHVYYGK----------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             EEEEeeEEEEECC----------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            5789999999965          23567788999999999999999999999999999864

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.30  E-value=4.1e-07  Score=88.43  Aligned_cols=77  Identities=18%  Similarity=0.123  Sum_probs=53.3

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHH
Q psy16778         26 TTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR  101 (433)
Q Consensus        26 ~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (433)
                      ..++++++++.+|.+++|+|++||||||+.++|++.+    |...+++.++...........++.+++......++..++
T Consensus         7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~   86 (302)
T TIGR01188         7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN   86 (302)
T ss_pred             eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence            3677888999999999999999999999999999976    666777655432111112235677776544444444444


Q ss_pred             H
Q psy16778        102 I  102 (433)
Q Consensus       102 ~  102 (433)
                      +
T Consensus        87 l   87 (302)
T TIGR01188        87 L   87 (302)
T ss_pred             H
Confidence            3

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.30  E-value=4.6e-07  Score=85.60  Aligned_cols=50  Identities=22%  Similarity=0.189  Sum_probs=44.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.
T Consensus         3 ~l~~~~~~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245          3 KIDARDVNFWYGD----------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             EEEEEEEEEEECC----------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence            6789999999975          2367778899999999999999999999999999874

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.30  E-value=4.8e-07  Score=85.53  Aligned_cols=51  Identities=20%  Similarity=0.155  Sum_probs=45.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         4 ~l~~~~l~~~~~~----------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14249          4 KIKIRGVNFFYHK----------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN   54 (251)
T ss_pred             eEEEEEEEEEECC----------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            6789999999975          23577788999999999999999999999999999965

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.30  E-value=4.8e-07  Score=86.37  Aligned_cols=70  Identities=20%  Similarity=0.077  Sum_probs=51.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+.+... +...+-..+.++++++.+|.+++|+|++||||||+++.|++.+    |...+++..+
T Consensus         3 ~l~~~nl~~~~~~~~~~-~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~   76 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLS-GKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPL   76 (268)
T ss_pred             eEEEeceEEEecCCccc-cccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEec
Confidence            58899999999731000 0000123678888999999999999999999999999999865    5555555443

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.30  E-value=3.4e-07  Score=84.75  Aligned_cols=64  Identities=22%  Similarity=0.177  Sum_probs=48.7

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+...      .....+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 l~~~~l~~~~~~~~------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   68 (220)
T cd03293           1 LEVRNVSKTYGGGG------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPV   68 (220)
T ss_pred             CeEEEEEEEcCCCC------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence            46789999996411      0012567888999999999999999999999999999865    5555555433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.30  E-value=4.3e-07  Score=86.77  Aligned_cols=63  Identities=21%  Similarity=0.065  Sum_probs=50.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+...        ...+.+.++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++
T Consensus         7 ~l~i~~l~~~~~~~~--------~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~   73 (269)
T PRK13648          7 IIVFKNVSFQYQSDA--------SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI   73 (269)
T ss_pred             eEEEEEEEEEcCCCC--------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence            578999999997521        12566777999999999999999999999999999865    5566665443

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.30  E-value=4.6e-07  Score=86.40  Aligned_cols=70  Identities=17%  Similarity=0.029  Sum_probs=51.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+...... ..-+-..++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         2 ~l~~~~l~~~~~~~~~~~-~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   75 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFG-AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDL   75 (265)
T ss_pred             eEEEEeEEEEeccCcccc-ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc
Confidence            478999999996311000 000123678899999999999999999999999999999976    5566665444

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.29  E-value=3.2e-07  Score=95.82  Aligned_cols=61  Identities=23%  Similarity=0.258  Sum_probs=51.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         5 ~l~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i   69 (510)
T PRK09700          5 YISMAGIGKSFGP----------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINY   69 (510)
T ss_pred             eEEEeeeEEEcCC----------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEEC
Confidence            5789999999975          23677888999999999999999999999999999865    5666766554

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.29  E-value=3.3e-07  Score=96.15  Aligned_cols=62  Identities=27%  Similarity=0.173  Sum_probs=51.4

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      ++++||++.|+...         ..+++.++++++|+.++|+|++||||||+++.|.+.+    |...+++-++.
T Consensus       335 I~~~~vsf~Y~~~~---------~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~  400 (529)
T TIGR02868       335 LELRDLSFGYPGSP---------PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVS  400 (529)
T ss_pred             EEEEEEEEecCCCC---------ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence            67889999996421         2688899999999999999999999999999999876    66777765543

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK15453 phosphoribulokinase; Provisional

Probab=98.29  E-value=1.7e-05  Score=75.03  Aligned_cols=39  Identities=21%  Similarity=0.525  Sum_probs=34.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCc
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHP   74 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~   74 (433)
                      .++.+|+|+|.|||||||+++.|++.++     ..+++.|.++.
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            4678999999999999999999998773     56899999875

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.29  E-value=5.1e-07  Score=80.85  Aligned_cols=58  Identities=28%  Similarity=0.230  Sum_probs=46.3

Q ss_pred             ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778          4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      +++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |..+++..+
T Consensus         1 ~~~~l~~~~~~----------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~   62 (180)
T cd03214           1 EVENLSVGYGG----------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD   62 (180)
T ss_pred             CeeEEEEEECC----------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE
Confidence            46788999964          23567788999999999999999999999999999865    445555433

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.28  E-value=4.4e-07  Score=89.03  Aligned_cols=89  Identities=13%  Similarity=0.137  Sum_probs=60.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      +++++||++.|+...-.....-....+.++++++.+|.+++|+|+|||||||+++.|++.+    |...+++.++.....
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~   84 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP   84 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence            5789999999963110000000134788899999999999999999999999999999976    666777665532110


Q ss_pred             ----ccccccCCCCCCc
Q psy16778         78 ----IDKMSAKQPLNDE   90 (433)
Q Consensus        78 ----~~~~~~~~~~~~~   90 (433)
                          ......++.+|++
T Consensus        85 ~~~~~~r~~i~~v~Q~~  101 (327)
T PRK11308         85 EAQKLLRQKIQIVFQNP  101 (327)
T ss_pred             HHHHHHhCCEEEEEcCc
Confidence                0112356777764

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.28  E-value=9.8e-07  Score=79.89  Aligned_cols=54  Identities=26%  Similarity=0.139  Sum_probs=43.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .++++++++.|+...      .....++++++++.+|.+++|+|++||||||+.+.|+..
T Consensus         3 ~l~~~~l~~~~~~~~------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232           3 VLTWKNLNYTVPVKG------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             EEEEeeeEEEecCCC------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            467899999996310      001257788899999999999999999999999999974

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.28  E-value=5.9e-07  Score=81.91  Aligned_cols=60  Identities=20%  Similarity=0.207  Sum_probs=49.5

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL------GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id~D~~   72 (433)
                      +.++++++.|+.          ...+.+.++++.+|.+++|+|++||||||+.+.|++.+      |...+++.++
T Consensus         1 l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~   66 (200)
T cd03217           1 LEIKDLHVSVGG----------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDI   66 (200)
T ss_pred             CeEEEEEEEeCC----------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEEC
Confidence            467899999974          23678888999999999999999999999999999862      5556666554

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.28  E-value=6.3e-07  Score=91.42  Aligned_cols=106  Identities=20%  Similarity=0.156  Sum_probs=69.8

Q ss_pred             ccccccceeeeccCC-ccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCc-c
Q psy16778          2 AVSNFGNWRYWGMWP-PQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHP-Q   75 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~-~   75 (433)
                      .++++||+++|+... +.....-...+++++|++..+|++++|+|.|||||||++|.|++..    |...+++.++.- .
T Consensus       280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~  359 (539)
T COG1123         280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG  359 (539)
T ss_pred             eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence            478999999997422 0001122456888999999999999999999999999999999966    777777766211 1


Q ss_pred             ccc--cccccCCCCCCc--CChhHHHHHHHHHHHhh
Q psy16778         76 SNI--DKMSAKQPLNDE--DRRPWLNNINRIIHQLN  107 (433)
Q Consensus        76 ~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  107 (433)
                      ...  .....-+.||++  ...+..+..+.+.+.+.
T Consensus       360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~  395 (539)
T COG1123         360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLR  395 (539)
T ss_pred             chhhhhhhheEEEEeCcccccCccccHHHHHHhHHh
Confidence            111  112335667764  33444444444444444

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.28  E-value=4.1e-07  Score=83.72  Aligned_cols=61  Identities=16%  Similarity=0.153  Sum_probs=48.3

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+...         ..+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 l~~~~l~~~~~~~~---------~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i   65 (214)
T cd03292           1 IEFINVTKTYPNGT---------AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDV   65 (214)
T ss_pred             CEEEEEEEEeCCCc---------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc
Confidence            46789999996311         2566778999999999999999999999999999975    5555655443

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.28  E-value=5.4e-07  Score=85.18  Aligned_cols=50  Identities=18%  Similarity=0.241  Sum_probs=44.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ++++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.
T Consensus         5 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255          5 IITSSDVHLFYGK----------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             eEEEEeEEEEECC----------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999975          2367888899999999999999999999999999984

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.28  E-value=5e-07  Score=86.81  Aligned_cols=63  Identities=22%  Similarity=0.080  Sum_probs=51.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+...        ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         5 ~l~~~~l~~~~~~~~--------~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i   71 (279)
T PRK13635          5 IIRVEHISFRYPDAA--------TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVL   71 (279)
T ss_pred             eEEEEEEEEEeCCCC--------ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence            489999999996411        12567777999999999999999999999999999876    6667776655

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.28  E-value=5.6e-07  Score=84.26  Aligned_cols=62  Identities=26%  Similarity=0.179  Sum_probs=49.5

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+...        ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 i~~~~l~~~~~~~~--------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   66 (237)
T cd03252           1 ITFEHVRFRYKPDG--------PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDL   66 (237)
T ss_pred             CEEEEEEEecCCCC--------ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeeh
Confidence            46789999996421        23567888999999999999999999999999999876    5566666543

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.28  E-value=5.8e-07  Score=85.11  Aligned_cols=51  Identities=16%  Similarity=0.111  Sum_probs=45.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         7 ~l~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273          7 IIETENLNLFYTD----------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             eEEEeeeEEEeCC----------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            5789999999975          23678888999999999999999999999999999864

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.27  E-value=4.3e-07  Score=87.19  Aligned_cols=62  Identities=16%  Similarity=0.174  Sum_probs=50.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+...         ..+.++++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++
T Consensus         3 ~l~~~~l~~~~~~~~---------~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   68 (277)
T PRK13652          3 LIETRDLCYSYSGSK---------EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPI   68 (277)
T ss_pred             eEEEEEEEEEeCCCC---------ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence            578999999996311         2567788999999999999999999999999999865    6666666544

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=98.27  E-value=6.3e-06  Score=70.90  Aligned_cols=159  Identities=16%  Similarity=0.143  Sum_probs=82.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCCccccccccccCCCCCCcC----ChhHHHHHH-HHHHHhhhCCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLHPQSNIDKMSAKQPLNDED----RRPWLNNIN-RIIHQLNVDNL  111 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~  111 (433)
                      .++++++|.||+||||+.+.+.+.+ +...++-.++.-+.   ....|.+-..+.    .......++ ..++.......
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~---A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~   80 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEI---AKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMAL   80 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHH---HHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhh
Confidence            4899999999999999999999998 77777777664221   112232211110    011112222 22333333332


Q ss_pred             cEEEEcCc----------ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC---CHHhHHHH--HhhccCCCC-
Q psy16778        112 TGVLVCSA----------LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM---PADLLESQ--FQTLEEPDP-  175 (433)
Q Consensus       112 ~~Vi~~~~----------~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~---~~~~l~~~--~~~~~~~~~-  175 (433)
                      .+|+|+..          ..+.|  .+.+..+..+|.|.++++++..|-.+...+..   ..+.+...  +.++....+ 
T Consensus        81 ~iivDtH~~IkTP~GylpgLP~~--Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~A  158 (189)
T COG2019          81 EIIVDTHATIKTPAGYLPGLPSW--VLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAYA  158 (189)
T ss_pred             ceEEeccceecCCCccCCCCcHH--HHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            36777533          22222  34444335788899998888877544322212   22222211  111111100 


Q ss_pred             -CCCCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778        176 -LVEPDVRTVSVN-EPLEGIVSKSAIMP  201 (433)
Q Consensus       176 -~~~~~~~~Id~~-~~~ee~~~~i~~~l  201 (433)
                       .......+|.+. ..+++.+..|...+
T Consensus       159 ~~~gatVkIV~n~~~~~e~Aa~eiv~~l  186 (189)
T COG2019         159 ILLGATVKIVENHEGDPEEAAEEIVELL  186 (189)
T ss_pred             HHhCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence             012244555554 89999888887654

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.27  E-value=5.2e-07  Score=86.81  Aligned_cols=63  Identities=22%  Similarity=0.065  Sum_probs=50.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-------CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-------GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-------g~~~id~D~~   72 (433)
                      +++++++++.|+...        ...+.++++++.+|.+++|+|++||||||+.+.|++.+       |...+++.++
T Consensus         5 ~l~i~~l~~~~~~~~--------~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~   74 (282)
T PRK13640          5 IVEFKHVSFTYPDSK--------KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITL   74 (282)
T ss_pred             eEEEEEEEEEcCCCC--------ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEEC
Confidence            688999999996421        13667778999999999999999999999999999876       4555665544

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.27  E-value=5.1e-07  Score=86.24  Aligned_cols=51  Identities=24%  Similarity=0.177  Sum_probs=45.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus        13 ~l~i~nl~~~~~~----------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   63 (269)
T PRK14259         13 IISLQNVTISYGT----------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMN   63 (269)
T ss_pred             eEEEEeEEEEECC----------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            5789999999975          23677888999999999999999999999999999863

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.27  E-value=5.5e-07  Score=94.95  Aligned_cols=51  Identities=18%  Similarity=0.025  Sum_probs=45.8

Q ss_pred             ccccccceeeec-cCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWG-MWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++||++.|+ .          ...+.++++++.+|.+++|+|++||||||+.++|++.+
T Consensus         6 ~l~i~~l~~~y~~~----------~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~   57 (556)
T PRK11819          6 IYTMNRVSKVVPPK----------KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD   57 (556)
T ss_pred             EEEEeeEEEEeCCC----------CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            689999999997 4          23677888999999999999999999999999999865

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.27  E-value=1e-06  Score=78.81  Aligned_cols=62  Identities=24%  Similarity=0.225  Sum_probs=51.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      |++.+|++..-.+          -+.+++++++...|++.+|+||+||||||+.|.|++.+    |...+..-.+-
T Consensus         1 mi~a~nls~~~~G----------r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~   66 (259)
T COG4559           1 MIRAENLSYSLAG----------RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLN   66 (259)
T ss_pred             CeeeeeeEEEeec----------ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChh
Confidence            4677888877765          45778899999999999999999999999999999988    45666665554

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.27  E-value=6.7e-07  Score=92.90  Aligned_cols=60  Identities=23%  Similarity=0.216  Sum_probs=50.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...++...
T Consensus         3 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~   66 (490)
T PRK10938          3 SLQISQGTFRLSD----------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSH   66 (490)
T ss_pred             eEEEEeEEEEcCC----------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcc
Confidence            6899999999975          23678889999999999999999999999999999865    555555443

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.27  E-value=4.8e-07  Score=87.41  Aligned_cols=67  Identities=21%  Similarity=0.193  Sum_probs=52.5

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      |.+++++|++.|+....     -....++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..+
T Consensus         1 ~~l~~~~l~~~y~~~~~-----~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   71 (290)
T PRK13634          1 MDITFQKVEHRYQYKTP-----FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVI   71 (290)
T ss_pred             CEEEEEEEEEEECCCCc-----ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence            45889999999964210     0023677888999999999999999999999999999865    6666666544

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.26  E-value=6.4e-07  Score=82.90  Aligned_cols=62  Identities=23%  Similarity=0.131  Sum_probs=49.7

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+...        ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..+
T Consensus         3 l~~~~l~~~~~~~~--------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   68 (221)
T cd03244           3 IEFKNVSLRYRPNL--------PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI   68 (221)
T ss_pred             EEEEEEEEecCCCC--------cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEh
Confidence            57889999997421        13678888999999999999999999999999999865    5555655443

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.26  E-value=5.9e-07  Score=85.94  Aligned_cols=63  Identities=27%  Similarity=0.167  Sum_probs=50.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+...        ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         7 ~l~~~nl~~~~~~~~--------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i   73 (271)
T PRK13632          7 MIKVENVSFSYPNSE--------NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI   73 (271)
T ss_pred             EEEEEeEEEEcCCCC--------ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec
Confidence            578999999996311        23567788999999999999999999999999999976    6666666554

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.26  E-value=5.3e-07  Score=85.47  Aligned_cols=60  Identities=25%  Similarity=0.175  Sum_probs=50.1

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+.          ...+.+.++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         2 l~~~~l~~~~~~----------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~   65 (256)
T TIGR03873         2 LRLSRVSWSAGG----------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDL   65 (256)
T ss_pred             ceEEeEEEEECC----------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEc
Confidence            578899999975          23677888999999999999999999999999999865    5566666544

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.26  E-value=7.4e-07  Score=82.68  Aligned_cols=65  Identities=17%  Similarity=0.111  Sum_probs=50.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDG   69 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~   69 (433)
                      +++++++++.|+.+.. ..  -+...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...++.
T Consensus         1 ml~~~~l~~~~~~~~~-~~--~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~   69 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQ-GG--VRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRH   69 (224)
T ss_pred             CEEEEeeEEEeecccC-CC--cceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEec
Confidence            4789999999974210 00  0123577888999999999999999999999999999876    6666663

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.25  E-value=4e-06  Score=77.57  Aligned_cols=36  Identities=31%  Similarity=0.355  Sum_probs=30.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC-------CeEEeCCCCCcc
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLG-------VKFIDGDHLHPQ   75 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg-------~~~id~D~~~~~   75 (433)
                      +|+|.|++||||||+++.|++.+.       +.+++.|.++..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~   43 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYP   43 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCc
Confidence            489999999999999999999883       457888988643

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.25  E-value=7.5e-07  Score=84.11  Aligned_cols=52  Identities=19%  Similarity=0.140  Sum_probs=45.2

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      |++++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus         2 ~~l~~~~v~~~~~~----------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (250)
T PRK14266          2 YRIEVENLNTYFDD----------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMN   53 (250)
T ss_pred             cEEEEEeEEEEeCC----------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            37889999999975          23677788999999999999999999999999999753

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.25  E-value=6.6e-07  Score=84.58  Aligned_cols=61  Identities=20%  Similarity=0.194  Sum_probs=49.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--h----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR--L----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~--l----g~~~id~D~~   72 (433)
                      ++++++|++.|+.          -..++++++++.+|.+++|+|++||||||+++.|++.  +    |..++++..+
T Consensus         7 ~l~~~~l~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~   73 (252)
T CHL00131          7 ILEIKNLHASVNE----------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI   73 (252)
T ss_pred             eEEEEeEEEEeCC----------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence            4789999999964          2367788899999999999999999999999999984  1    5556655443

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.25  E-value=7.5e-07  Score=85.35  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=49.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+         |...+++.++
T Consensus        20 ~l~~~nl~~~~~~----------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l   89 (274)
T PRK14265         20 VFEVEGVKVFYGG----------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI   89 (274)
T ss_pred             eEEEeeEEEEeCC----------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence            5788999999975          23577788999999999999999999999999999753         4455655444

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.24  E-value=6.6e-07  Score=86.03  Aligned_cols=67  Identities=22%  Similarity=0.203  Sum_probs=52.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+....    .-+...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..+
T Consensus         4 ~l~~~~l~~~~~~~~~----~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i   74 (280)
T PRK13633          4 MIKCKNVSYKYESNEE----STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDT   74 (280)
T ss_pred             eEEEeeeEEEcCCCCC----CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEec
Confidence            6889999999974210    00123677888999999999999999999999999999865    6666766554

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.24  E-value=3.5e-07  Score=95.42  Aligned_cols=61  Identities=18%  Similarity=0.161  Sum_probs=50.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..+
T Consensus        11 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   75 (510)
T PRK15439         11 LLCARSISKQYSG----------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPC   75 (510)
T ss_pred             eEEEEeEEEEeCC----------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence            5789999999975          23567788999999999999999999999999999875    5566666444

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.24  E-value=6.4e-07  Score=82.90  Aligned_cols=65  Identities=22%  Similarity=0.110  Sum_probs=50.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      .+++++|++.|+....      ....+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 ~l~~~~v~~~~~~~~~------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~   69 (221)
T TIGR02211         1 LLKCENLGKRYQEGKL------DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSL   69 (221)
T ss_pred             CEEEEeeeEEccCCCc------ceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh
Confidence            3678999999964110      013567788999999999999999999999999999865    5566665443

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.24  E-value=1.5e-06  Score=82.77  Aligned_cols=99  Identities=20%  Similarity=0.157  Sum_probs=66.8

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC---------CeEEeCCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLG---------VKFIDGDHLH   73 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg---------~~~id~D~~~   73 (433)
                      ++++||+.+|....    .  ...+++++++++++|++++|+|-|||||||+++.+.+.+.         -..+++.++.
T Consensus         2 L~v~nL~v~f~~~~----g--~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~   75 (316)
T COG0444           2 LEVKNLSVSFPTDA----G--VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLL   75 (316)
T ss_pred             ceEeeeEEEEecCC----c--cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccc
Confidence            68899999996511    1  2468889999999999999999999999999999999774         2234444433


Q ss_pred             ccc-----cccccccCCCCCCc--CChhHHHHHHHHHHHhh
Q psy16778         74 PQS-----NIDKMSAKQPLNDE--DRRPWLNNINRIIHQLN  107 (433)
Q Consensus        74 ~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  107 (433)
                      .-.     ..++...+++||++  ...+.++.-..+.+.+.
T Consensus        76 ~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~  116 (316)
T COG0444          76 SLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLR  116 (316)
T ss_pred             cCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHH
Confidence            211     22344567888885  23444444333333333

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.24  E-value=7.3e-07  Score=84.70  Aligned_cols=51  Identities=25%  Similarity=0.168  Sum_probs=45.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         7 ~l~~~~l~~~~~~----------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~   57 (259)
T PRK14260          7 AIKVKDLSFYYNT----------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS   57 (259)
T ss_pred             eEEEEEEEEEECC----------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            5788999999975          23677888999999999999999999999999999864

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.24  E-value=5.9e-07  Score=88.15  Aligned_cols=66  Identities=20%  Similarity=0.070  Sum_probs=51.8

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC--------CeEEeCCCC
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLG--------VKFIDGDHL   72 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg--------~~~id~D~~   72 (433)
                      ..+++++|++.|+...    .  ....+.++++++.+|.+++|+|+|||||||+++.|++.+.        ...+++.++
T Consensus         2 ~~L~v~~l~~~~~~~~----~--~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i   75 (326)
T PRK11022          2 ALLNVDKLSVHFGDES----A--PFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDL   75 (326)
T ss_pred             ceEEEeCeEEEECCCC----c--cEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEEC
Confidence            0589999999997521    0  1246888999999999999999999999999999999663        245666554

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.24  E-value=1.1e-05  Score=77.32  Aligned_cols=41  Identities=27%  Similarity=0.312  Sum_probs=33.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CeEEeCCCCCcc
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG-------VKFIDGDHLHPQ   75 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg-------~~~id~D~~~~~   75 (433)
                      .+.+.+|+|.|++||||||+++.|...+.       +.++..|.+...
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~  106 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHP  106 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccccc
Confidence            46778999999999999999999987763       456788887643

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.24  E-value=6e-07  Score=86.02  Aligned_cols=62  Identities=19%  Similarity=0.076  Sum_probs=50.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+..         -..+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..+
T Consensus         1 ml~~~~l~~~~~~~---------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   66 (274)
T PRK13644          1 MIRLENVSYSYPDG---------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDT   66 (274)
T ss_pred             CEEEEEEEEEcCCC---------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEC
Confidence            47889999999531         12677888999999999999999999999999999865    6566665544

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.24  E-value=5.2e-07  Score=86.36  Aligned_cols=62  Identities=24%  Similarity=0.182  Sum_probs=49.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+..         ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         6 ~l~~~~l~~~~~~~---------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   71 (272)
T PRK15056          6 GIVVNDVTVTWRNG---------HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT   71 (272)
T ss_pred             eEEEEeEEEEecCC---------cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEh
Confidence            57899999999531         12567788999999999999999999999999999865    5555655443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.24  E-value=1.3e-05  Score=86.16  Aligned_cols=141  Identities=15%  Similarity=0.136  Sum_probs=76.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccc-cCCCCCCcCChhH--HHHHHHHH---HH-h
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMS-AKQPLNDEDRRPW--LNNINRII---HQ-L  106 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~---~~-~  106 (433)
                      .+.....|+++|++|+||||+++.|++.+++..++++.+........+. .+..+..+.....  .+.....+   .. .
T Consensus       211 p~~~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v  290 (664)
T PTZ00322        211 PMMGSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFI  290 (664)
T ss_pred             ccccceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3445568999999999999999999999988877777765433222222 1222222211111  11112222   12 2


Q ss_pred             hhCCCcEEEEcCcccHHHH----HHHHhcCC-----eEEEEEEcCHHHHHHHHHHhhCC--CCC----HHhHHHHHhhcc
Q psy16778        107 NVDNLTGVLVCSALRRNYR----DIIRNNNR-----VVFIYLKAEFGVILSRLQKRAEH--FMP----ADLLESQFQTLE  171 (433)
Q Consensus       107 ~~~~~~~Vi~~~~~~~~~~----~~l~~~~~-----~~vv~L~~~~e~l~~Rl~~R~~~--~~~----~~~l~~~~~~~~  171 (433)
                      ...|..+|++.......-|    +.+++.+.     .+.|..-|+...+.++...|...  +..    ...+.+.++.++
T Consensus       291 ~~~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~~~~  370 (664)
T PTZ00322        291 CKTDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIEQLE  370 (664)
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            2346667777766444333    44454431     23444466666666666555422  111    133445555555


Q ss_pred             CCC
Q psy16778        172 EPD  174 (433)
Q Consensus       172 ~~~  174 (433)
                      ..|
T Consensus       371 ~~Y  373 (664)
T PTZ00322        371 AVY  373 (664)
T ss_pred             hhc
Confidence            555

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.23  E-value=9e-07  Score=82.68  Aligned_cols=65  Identities=20%  Similarity=0.121  Sum_probs=50.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+....      ....+.++++++.+|.+++|+|++||||||+++.|++.+    |...+++.++
T Consensus         5 ~l~~~~l~~~~~~~~~------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i   73 (233)
T PRK11629          5 LLQCDNLCKRYQEGSV------QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPM   73 (233)
T ss_pred             eEEEEeEEEEcCCCCc------ceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEc
Confidence            5789999999964110      012567788999999999999999999999999999865    5566666544

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.23  E-value=6.8e-07  Score=85.30  Aligned_cols=51  Identities=22%  Similarity=0.186  Sum_probs=44.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus        19 ~l~~~nl~~~~~~----------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   69 (267)
T PRK14235         19 KMRARDVSVFYGE----------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN   69 (267)
T ss_pred             eEEEEeEEEEECC----------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4778999999975          23567788999999999999999999999999999864

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.23  E-value=6.5e-07  Score=84.63  Aligned_cols=51  Identities=24%  Similarity=0.217  Sum_probs=44.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++|++.|+..          ..+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         4 ~l~~~~l~~~~~~~----------~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~   54 (251)
T PRK09544          4 LVSLENVSVSFGQR----------RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             EEEEeceEEEECCc----------eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999752          2566777899999999999999999999999999865

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.23  E-value=6.5e-07  Score=86.41  Aligned_cols=66  Identities=18%  Similarity=0.117  Sum_probs=52.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+....     -....+.++++++.+|.+++|+|++||||||+++.|++.+    |...+++..+
T Consensus         1 mi~~~~v~~~y~~~~~-----~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i   70 (288)
T PRK13643          1 MIKFEKVNYTYQPNSP-----FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV   70 (288)
T ss_pred             CEEEEEEEEEeCCCCc-----ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence            4789999999974211     0012677888999999999999999999999999999976    6677776554

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.23  E-value=7.7e-07  Score=79.86  Aligned_cols=57  Identities=21%  Similarity=0.184  Sum_probs=47.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|              .+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         4 ~l~~~~l~~~~--------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   64 (182)
T cd03215           4 VLEVRGLSVKG--------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPV   64 (182)
T ss_pred             EEEEeccEEEe--------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC
Confidence            46788888876              456677889999999999999999999999999976    6667776554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.23  E-value=8.8e-07  Score=80.96  Aligned_cols=55  Identities=25%  Similarity=0.179  Sum_probs=43.7

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++|++.|+....   ..  ...+.++++++++|.+++|+|++||||||+.+.+++.+
T Consensus         1 l~~~~l~~~~~~~~~---~~--~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250           1 ISVEDASFTWDSGEQ---ET--SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             CEEeEEEEecCCCCc---cc--cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            468899999975210   00  02567788999999999999999999999999999865

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.23  E-value=6.3e-07  Score=86.59  Aligned_cols=65  Identities=17%  Similarity=0.120  Sum_probs=49.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      .++++|+++.|+....     .....+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.+
T Consensus         6 ~l~i~nl~~~~~~~~~-----~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~   74 (289)
T PRK13645          6 DIILDNVSYTYAKKTP-----FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYA   74 (289)
T ss_pred             eEEEEEEEEEeCCCCc-----cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence            3678999999975220     0012567788999999999999999999999999999876    555665543

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.22  E-value=6.3e-07  Score=85.91  Aligned_cols=62  Identities=16%  Similarity=0.153  Sum_probs=50.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+..         ...+.++++++.+|.+++|+|++||||||+.++|++.+    |...+++.++
T Consensus         1 ~l~~~~l~~~~~~~---------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~   66 (275)
T PRK13639          1 ILETRDLKYSYPDG---------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPI   66 (275)
T ss_pred             CEEEEEEEEEeCCC---------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEC
Confidence            47899999999631         12567778999999999999999999999999999865    6566666544

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.22  E-value=8.6e-07  Score=81.97  Aligned_cols=61  Identities=23%  Similarity=0.152  Sum_probs=48.8

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      ++++++++.|+...        ...+.+.++++.+|.+++|+|++||||||+.+.|++.+    |...+++..
T Consensus         3 l~~~~l~~~~~~~~--------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~   67 (220)
T cd03245           3 IEFRNVSFSYPNQE--------IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTD   67 (220)
T ss_pred             EEEEEEEEEcCCCC--------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEE
Confidence            67889999996411        23677788999999999999999999999999999865    555565543

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.22  E-value=6.6e-07  Score=85.94  Aligned_cols=82  Identities=21%  Similarity=0.080  Sum_probs=58.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.|+....       -..+.++++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++.....
T Consensus         4 ~l~~~~l~~~~~~~~~-------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~   76 (279)
T PRK13650          4 IIEVKNLTFKYKEDQE-------KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENV   76 (279)
T ss_pred             eEEEEeEEEEcCCCCc-------CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcH
Confidence            5889999999964110       12677788999999999999999999999999999976    767777665532110


Q ss_pred             -ccccccCCCCCCc
Q psy16778         78 -IDKMSAKQPLNDE   90 (433)
Q Consensus        78 -~~~~~~~~~~~~~   90 (433)
                       ......++.++++
T Consensus        77 ~~~~~~i~~v~q~~   90 (279)
T PRK13650         77 WDIRHKIGMVFQNP   90 (279)
T ss_pred             HHHHhhceEEEcCh
Confidence             0112346666654

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.22  E-value=7.8e-07  Score=85.31  Aligned_cols=51  Identities=24%  Similarity=0.098  Sum_probs=44.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus        21 ~l~i~nl~~~~~~----------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   71 (276)
T PRK14271         21 AMAAVNLTLGFAG----------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMN   71 (276)
T ss_pred             EEEEeeEEEEECC----------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            4789999999975          23677888999999999999999999999999999854

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.22  E-value=7.1e-07  Score=85.90  Aligned_cols=62  Identities=21%  Similarity=0.157  Sum_probs=51.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+. .        ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         5 ~l~~~~l~~~~~~-~--------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~   70 (283)
T PRK13636          5 ILKVEELNYNYSD-G--------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI   70 (283)
T ss_pred             eEEEEeEEEEeCC-C--------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEEC
Confidence            6889999999962 1        23677888999999999999999999999999999976    6667776554

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.22  E-value=5.9e-07  Score=85.85  Aligned_cols=46  Identities=37%  Similarity=0.533  Sum_probs=39.6

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778         27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus        27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      .+.++++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++
T Consensus        39 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~   88 (269)
T cd03294          39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDI   88 (269)
T ss_pred             EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEc
Confidence            577888999999999999999999999999999976    6666766544

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.22  E-value=8.2e-07  Score=94.98  Aligned_cols=58  Identities=19%  Similarity=0.175  Sum_probs=49.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDG   69 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~   69 (433)
                      +++++||++.||.          -..++++++++..|.+++|+|++||||||+.++|++.+    |...++.
T Consensus         1 ~i~i~nls~~~g~----------~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~   62 (638)
T PRK10636          1 MIVFSSLQIRRGV----------RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG   62 (638)
T ss_pred             CEEEEEEEEEeCC----------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC
Confidence            4789999999987          33678888999999999999999999999999999965    4455544

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.21  E-value=8.3e-07  Score=82.90  Aligned_cols=62  Identities=23%  Similarity=0.128  Sum_probs=48.7

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+...        -..+.+.++++.+|.+++|+|++||||||+.+.|++.+    |...+++..+
T Consensus         1 i~~~~l~~~~~~~~--------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   66 (234)
T cd03251           1 VEFKNVTFRYPGDG--------PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV   66 (234)
T ss_pred             CEEEEEEEEeCCCC--------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEh
Confidence            46789999997521        12566777999999999999999999999999999876    5555655443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.21  E-value=1.1e-06  Score=81.76  Aligned_cols=64  Identities=27%  Similarity=0.216  Sum_probs=50.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+...       +...+.+.++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++
T Consensus        11 ~l~~~~l~~~~~~~~-------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~   78 (226)
T cd03248          11 IVKFQNVTFAYPTRP-------DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI   78 (226)
T ss_pred             eEEEEEEEEEeCCCC-------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCch
Confidence            578899999996411       013677888999999999999999999999999999875    5555655443

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.21  E-value=1.3e-06  Score=80.13  Aligned_cols=62  Identities=23%  Similarity=0.060  Sum_probs=49.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      .++++++++.|+...        -..+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++..
T Consensus         6 ~l~~~~l~~~~~~~~--------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~   71 (207)
T cd03369           6 EIEVENLSVRYAPDL--------PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGID   71 (207)
T ss_pred             eEEEEEEEEEeCCCC--------cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEE
Confidence            367889999997521        13677888999999999999999999999999999865    555565543

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.21  E-value=8.9e-07  Score=84.75  Aligned_cols=51  Identities=22%  Similarity=0.165  Sum_probs=44.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus        25 ~l~~~nl~~~~~~----------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~   75 (272)
T PRK14236         25 ALEVRNLNLFYGD----------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMN   75 (272)
T ss_pred             EEEEEEEEEEECC----------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            4788999999974          23567788999999999999999999999999999863

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.21  E-value=8.5e-07  Score=82.54  Aligned_cols=61  Identities=20%  Similarity=0.156  Sum_probs=49.4

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+...         ..+.++++++.+|.+++|+|++||||||+.+.|++.+    |...++...+
T Consensus         3 l~~~~l~~~~~~~~---------~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~   67 (229)
T cd03254           3 IEFENVNFSYDEKK---------PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI   67 (229)
T ss_pred             EEEEEEEEecCCCC---------ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeH
Confidence            57889999996411         2677888999999999999999999999999999876    6566665443

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=7.8e-07  Score=84.46  Aligned_cols=51  Identities=22%  Similarity=0.165  Sum_probs=44.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus        12 ~l~~~~l~~~~~~----------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   62 (258)
T PRK14268         12 QIKVENLNLWYGE----------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMN   62 (258)
T ss_pred             eEEEeeeEEEeCC----------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            5788999999974          23577788999999999999999999999999999753

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.21  E-value=8.6e-07  Score=82.95  Aligned_cols=60  Identities=27%  Similarity=0.349  Sum_probs=48.9

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      ++++++++.|+.           +.+.+.++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++.
T Consensus         1 l~~~~l~~~~~~-----------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~   64 (235)
T cd03299           1 LKVENLSKDWKE-----------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT   64 (235)
T ss_pred             CeeEeEEEEeCC-----------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcC
Confidence            467899999974           1366677999999999999999999999999999965    66677765543

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.20  E-value=1.1e-06  Score=80.48  Aligned_cols=70  Identities=17%  Similarity=0.060  Sum_probs=53.3

Q ss_pred             ccccccceeeeccCC--------------ccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----C
Q psy16778          2 AVSNFGNWRYWGMWP--------------PQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----G   63 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g   63 (433)
                      ++++.+|++.|.-..              ......-..-++++.+++..+|..|+|+|.+|||||||+++|++.+    |
T Consensus         3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G   82 (249)
T COG1134           3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG   82 (249)
T ss_pred             EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence            678888888884311              0111233445788999999999999999999999999999999977    6


Q ss_pred             CeEEeCCC
Q psy16778         64 VKFIDGDH   71 (433)
Q Consensus        64 ~~~id~D~   71 (433)
                      ...+.++.
T Consensus        83 ~v~v~G~v   90 (249)
T COG1134          83 KVKVTGKV   90 (249)
T ss_pred             eEEEcceE
Confidence            66666654

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.20  E-value=9.8e-07  Score=84.69  Aligned_cols=64  Identities=22%  Similarity=0.111  Sum_probs=51.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++||++.|+...       ....+.++++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++
T Consensus         4 ~l~~~~l~~~~~~~~-------~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i   71 (277)
T PRK13642          4 ILEVENLVFKYEKES-------DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL   71 (277)
T ss_pred             eEEEEEEEEEcCCCC-------cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEC
Confidence            688999999997421       012567788999999999999999999999999999876    6566665443

>KOG0057|consensus

Probab=98.20  E-value=1.4e-06  Score=87.80  Aligned_cols=80  Identities=24%  Similarity=0.153  Sum_probs=61.5

Q ss_pred             ccccccceeeeccCCccceeeeeec-ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccc-
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMT-TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQS-   76 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~-   76 (433)
                      .+.++||++.||+          .+ .+...++++++|+.++|+|.+||||||+.|.|-+-+   |-.+||+-++.+-. 
T Consensus       351 ~I~F~dV~f~y~~----------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~  420 (591)
T KOG0057|consen  351 SIEFDDVHFSYGP----------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSL  420 (591)
T ss_pred             cEEEEeeEEEeCC----------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhCh
Confidence            3678999999987          34 677899999999999999999999999999999866   88899998874311 


Q ss_pred             cccccccCCCCCCcC
Q psy16778         77 NIDKMSAKQPLNDED   91 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~   91 (433)
                      ..-+...|+++|+..
T Consensus       421 ~SlR~~Ig~VPQd~~  435 (591)
T KOG0057|consen  421 ESLRQSIGVVPQDSV  435 (591)
T ss_pred             HHhhhheeEeCCccc
Confidence            011223467777643

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.20  E-value=5.3e-07  Score=93.89  Aligned_cols=61  Identities=26%  Similarity=0.284  Sum_probs=51.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++
T Consensus         4 ~l~~~~l~~~~~~----------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i   68 (501)
T PRK11288          4 YLSFDGIGKTFPG----------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM   68 (501)
T ss_pred             eEEEeeeEEEECC----------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC
Confidence            5789999999975          23677888999999999999999999999999999865    6666766544

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.19  E-value=1.2e-06  Score=83.77  Aligned_cols=62  Identities=24%  Similarity=0.119  Sum_probs=50.2

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~   72 (433)
                      +.++||++.|....        ...+.++++++.+|.+++|+|++||||||+.+.|++.+   |..++++.++
T Consensus         3 i~~~nls~~~~~~~--------~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i   67 (275)
T cd03289           3 MTVKDLTAKYTEGG--------NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSW   67 (275)
T ss_pred             EEEEEEEEEeCCCC--------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEh
Confidence            67899999995322        13677888999999999999999999999999999876   5556665544

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.19  E-value=1.4e-06  Score=77.01  Aligned_cols=51  Identities=24%  Similarity=0.037  Sum_probs=43.1

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++++.|+..         ...+.+.++++.+|.+++|+|++||||||+++.|++.+
T Consensus         1 i~~~~~~~~~~~~---------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (166)
T cd03223           1 IELENLSLATPDG---------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW   51 (166)
T ss_pred             CEEEEEEEEcCCC---------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4678899999531         12577888999999999999999999999999999865

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.18  E-value=1e-06  Score=92.89  Aligned_cols=51  Identities=18%  Similarity=0.024  Sum_probs=45.4

Q ss_pred             ccccccceeeec-cCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWG-MWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++||++.|+ .          ...+.++++++.+|.+++|+|++||||||+.++|++.+
T Consensus         4 ~i~~~nls~~~~~~----------~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~   55 (552)
T TIGR03719         4 IYTMNRVSKVVPPK----------KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD   55 (552)
T ss_pred             EEEEeeEEEecCCC----------CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            688999999997 3          23677888999999999999999999999999999865

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.18  E-value=9.5e-07  Score=85.13  Aligned_cols=51  Identities=20%  Similarity=0.153  Sum_probs=44.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++|++.|+.          ...+.++++++.+|.+++|+|++|||||||++.|++.+
T Consensus        39 ~l~i~~l~~~~~~----------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   89 (285)
T PRK14254         39 VIEARDLNVFYGD----------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMN   89 (285)
T ss_pred             eEEEEEEEEEECC----------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            4788999999975          23677888999999999999999999999999999864

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.18  E-value=1.1e-06  Score=83.67  Aligned_cols=51  Identities=29%  Similarity=0.174  Sum_probs=44.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+.          ...+.++++++++|.+++|+|++||||||+.+.|++.+
T Consensus         7 ~l~~~nl~~~~~~----------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   57 (261)
T PRK14258          7 AIKVNNLSFYYDT----------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN   57 (261)
T ss_pred             eEEEeeEEEEeCC----------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence            5789999999975          23677888999999999999999999999999999865

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.18  E-value=1e-06  Score=94.25  Aligned_cols=58  Identities=19%  Similarity=0.248  Sum_probs=49.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDG   69 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~   69 (433)
                      ++++++|++.|+.          ...+.++++++..|.+++|+|++|||||||.++|++.+    |...++.
T Consensus         3 ~l~i~~ls~~~~~----------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~   64 (635)
T PRK11147          3 LISIHGAWLSFSD----------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ   64 (635)
T ss_pred             EEEEeeEEEEeCC----------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence            6899999999986          34677888999999999999999999999999999965    5555544

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.17  E-value=7.5e-07  Score=82.71  Aligned_cols=38  Identities=26%  Similarity=0.172  Sum_probs=34.3

Q ss_pred             ecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         25 MTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        25 ~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus        35 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          35 FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34677888999999999999999999999999999865

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.17  E-value=8.3e-07  Score=83.11  Aligned_cols=69  Identities=14%  Similarity=0.057  Sum_probs=49.9

Q ss_pred             cccccceeeeccCCccce-----------eeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEE
Q psy16778          3 VSNFGNWRYWGMWPPQYV-----------VTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFI   67 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~i   67 (433)
                      +.++|+++.|+.-.-...           .+-+...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~   80 (236)
T cd03267           1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV   80 (236)
T ss_pred             CceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            357888888876220000           001234778899999999999999999999999999999865    55556


Q ss_pred             eCCC
Q psy16778         68 DGDH   71 (433)
Q Consensus        68 d~D~   71 (433)
                      +...
T Consensus        81 ~g~~   84 (236)
T cd03267          81 AGLV   84 (236)
T ss_pred             CCEE
Confidence            5543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.16  E-value=1.1e-06  Score=95.11  Aligned_cols=63  Identities=27%  Similarity=0.138  Sum_probs=53.0

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      ++++||++.|+...        ...++++++++++|+.++|+|++||||||+++.|++.+    |...+|+.++.
T Consensus       452 I~~~nvsf~Y~~~~--------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~  518 (686)
T TIGR03797       452 IEVDRVTFRYRPDG--------PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA  518 (686)
T ss_pred             EEEEEEEEEcCCCC--------ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcC
Confidence            67889999996422        23677888999999999999999999999999999977    77788876664

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=98.16  E-value=1.4e-05  Score=77.23  Aligned_cols=157  Identities=12%  Similarity=0.097  Sum_probs=100.9

Q ss_pred             hhhcceeecccccCCC--CCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHH
Q psy16778        222 ALKVLRIRPRVMRDLS--KRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAE  299 (433)
Q Consensus       222 a~~~~~l~pr~l~~~~--~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~  299 (433)
                      .|+++.|+|..+...+  ++|++|+++|.++++||+++++.      -..+..+|++|.+.|...++--.   +.|+..+
T Consensus         3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~------t~in~~LA~~a~~~G~~~i~hK~---~~E~~~s   73 (321)
T TIGR01306         3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQ------TIIDEKLAEQLAENGYFYIMHRF---DEESRIP   73 (321)
T ss_pred             CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccc------hhhhHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence            4788999999888775  79999999999999999999982      36788899999999999887773   5666442


Q ss_pred             ---hCCCCcceEEEeeccCHHHHHHHHHHHHHcC--CcEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCcch
Q psy16778        300 ---KTPQTTKWFQLYIYRDREITKSLVQRAEKAG--YKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTK  374 (433)
Q Consensus       300 ---~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag--~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~~~  374 (433)
                         ...+.....-+......+-. +.+..-.++|  ...+++++            .++++..---.++.|.+..+    
T Consensus        74 fvrk~k~~~L~v~~SvG~t~e~~-~r~~~lv~a~~~~d~i~~D~------------ahg~s~~~~~~i~~i~~~~p----  136 (321)
T TIGR01306        74 FIKDMQERGLFASISVGVKACEY-EFVTQLAEEALTPEYITIDI------------AHGHSNSVINMIKHIKTHLP----  136 (321)
T ss_pred             HHHhccccccEEEEEcCCCHHHH-HHHHHHHhcCCCCCEEEEeC------------ccCchHHHHHHHHHHHHhCC----
Confidence               22111123333333333322 3344445667  46666655            22221101112333333322    


Q ss_pred             hhhhhccCCHHHHHHHHHHHHHcCCcEEEEec
Q psy16778        375 WFQLYIYRDREITKSLVQRAEKAGYKALVLTV  406 (433)
Q Consensus       375 w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTv  406 (433)
                        ...+......+.+.++++.++|+++|.|++
T Consensus       137 --~~~vi~GnV~t~e~a~~l~~aGad~I~V~~  166 (321)
T TIGR01306       137 --DSFVIAGNVGTPEAVRELENAGADATKVGI  166 (321)
T ss_pred             --CCEEEEecCCCHHHHHHHHHcCcCEEEECC
Confidence              122334446699999999999999999874

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.15  E-value=4.5e-05  Score=71.57  Aligned_cols=35  Identities=26%  Similarity=0.576  Sum_probs=31.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCc
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHP   74 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~   74 (433)
                      +|+|+|.|||||||+++.|.+.++     ..+++.|.++.
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            589999999999999999998773     56899999986

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.15  E-value=1.3e-06  Score=94.91  Aligned_cols=64  Identities=25%  Similarity=0.110  Sum_probs=53.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      .++++||++.|+...        -..+++.++++++|+.|+|+|++||||||+++.|++.+    |...+|+-++.
T Consensus       477 ~I~~~~vsf~y~~~~--------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~  544 (710)
T TIGR03796       477 YVELRNITFGYSPLE--------PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPRE  544 (710)
T ss_pred             eEEEEEEEEecCCCC--------CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHH
Confidence            367889999997522        23677888999999999999999999999999999977    77778776653

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.15  E-value=1.3e-06  Score=85.43  Aligned_cols=64  Identities=17%  Similarity=0.120  Sum_probs=50.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGD   70 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D   70 (433)
                      +++++++++.|+....     .+...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++-
T Consensus        21 ~l~~~nl~~~y~~~~~-----~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~   88 (320)
T PRK13631         21 ILRVKNLYCVFDEKQE-----NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDI   88 (320)
T ss_pred             eEEEEeEEEEeCCCCc-----ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCE
Confidence            5789999999964210     0123677888999999999999999999999999999865    65666543

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=5.6e-06  Score=72.77  Aligned_cols=63  Identities=24%  Similarity=0.191  Sum_probs=49.3

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      |+++.++|+-.=+.          -..+.+++++++.|..+.|+|++||||||+.|+|++.+    |..++....+.
T Consensus         1 ~~L~a~~L~~~R~e----------~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~   67 (209)
T COG4133           1 MMLEAENLSCERGE----------RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQ   67 (209)
T ss_pred             CcchhhhhhhccCc----------ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCc
Confidence            45566666555444          34677888999999999999999999999999999976    66777766554

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.15  E-value=1.3e-05  Score=73.51  Aligned_cols=119  Identities=21%  Similarity=0.215  Sum_probs=72.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeE-EeCCCCCcc------------------ccccccccCCCCCCcCC---
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKF-IDGDHLHPQ------------------SNIDKMSAKQPLNDEDR---   92 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~-id~D~~~~~------------------~~~~~~~~~~~~~~~~~---   92 (433)
                      ++.+.+|+|-|.||.||||+|..||.+||+.. +++|-+++-                  ..|..+...... ++--   
T Consensus        86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~-~piiaGF  164 (299)
T COG2074          86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDE-NPIIAGF  164 (299)
T ss_pred             cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCC-cchhhhH
Confidence            56778999999999999999999999999975 666654210                  111111100000 0000   


Q ss_pred             ----hhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHH-HHHhcCCeEEEEE-EcCHHHHHHHHHHhhC
Q psy16778         93 ----RPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRD-IIRNNNRVVFIYL-KAEFGVILSRLQKRAE  155 (433)
Q Consensus        93 ----~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~-~l~~~~~~~vv~L-~~~~e~l~~Rl~~R~~  155 (433)
                          ....-.++.++...+..|.++||.+-...+...+ ...+. +.+..+| -.+++....|...|.+
T Consensus       165 ~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~~~~-n~~~~~l~i~dee~Hr~RF~~R~~  232 (299)
T COG2074         165 EDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEALGN-NVFMFMLYIADEELHRERFYDRIR  232 (299)
T ss_pred             HHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhhhcc-ceEEEEEEeCCHHHHHHHHHHHHH
Confidence                1112246777888888999999987665554422 22222 1234444 5567788888877763

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.15  E-value=1.4e-06  Score=81.67  Aligned_cols=62  Identities=23%  Similarity=0.195  Sum_probs=48.3

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      ++++++++.|+..+       +...+.++++++.+|.+++|+|++||||||+++.|++.+    |...+++.+
T Consensus         1 l~i~~l~~~~~~~~-------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~   66 (238)
T cd03249           1 IEFKNVSFRYPSRP-------DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVD   66 (238)
T ss_pred             CeEEEEEEecCCCC-------CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEe
Confidence            46789999996411       012567788999999999999999999999999999875    555555543

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.14  E-value=1.1e-05  Score=68.76  Aligned_cols=124  Identities=19%  Similarity=0.268  Sum_probs=76.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeCCCCCccccccccccCCCCCCcC--ChhHHHHHHHHHHHhhhCCCcE
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL--GVKFIDGDHLHPQSNIDKMSAKQPLNDED--RRPWLNNINRIIHQLNVDNLTG  113 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  113 (433)
                      +...++-|++||||||+-..+-..+  ++.++++|.+..+         +..+++.  ....-+.....+..+...+.+.
T Consensus         2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~---------i~p~~p~~~~i~A~r~ai~~i~~~I~~~~~F   72 (187)
T COG4185           2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ---------ISPDNPTSAAIQAARVAIDRIARLIDLGRPF   72 (187)
T ss_pred             ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhh---------cCCCCchHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            3456778999999999976554444  7789999987422         1222221  1222234455566667777777


Q ss_pred             EEEcCcccHHHHHHHHhcCC----eEEEEEEcC-HHHHHHHHHHhh---CCCCCHHhHHHHHhhc
Q psy16778        114 VLVCSALRRNYRDIIRNNNR----VVFIYLKAE-FGVILSRLQKRA---EHFMPADLLESQFQTL  170 (433)
Q Consensus       114 Vi~~~~~~~~~~~~l~~~~~----~~vv~L~~~-~e~l~~Rl~~R~---~~~~~~~~l~~~~~~~  170 (433)
                      ...+.-..+..++.++....    ....|+..+ .|.-.+|+..|.   ++..+.+.+++.+.+.
T Consensus        73 ~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rs  137 (187)
T COG4185          73 IAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRS  137 (187)
T ss_pred             ceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence            77665555556665554322    334455444 678888988874   6777777776665543

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.14  E-value=1.3e-06  Score=83.22  Aligned_cols=51  Identities=20%  Similarity=0.095  Sum_probs=44.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++++++++.|+.          ...+.++++++++|.+++|+|++||||||+.+.|++.+
T Consensus        16 ~l~~~~l~~~~~~----------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   66 (265)
T PRK14252         16 KSEVNKLNFYYGG----------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMH   66 (265)
T ss_pred             eEEEEEEEEEECC----------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence            4678899999975          23677888999999999999999999999999999753

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.14  E-value=1.5e-06  Score=91.16  Aligned_cols=51  Identities=22%  Similarity=0.165  Sum_probs=45.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         1 ml~i~~ls~~~~~----------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~   51 (530)
T PRK15064          1 MLSTANITMQFGA----------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL   51 (530)
T ss_pred             CEEEEEEEEEeCC----------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4789999999975          23677888999999999999999999999999999865

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.14  E-value=1.2e-06  Score=91.26  Aligned_cols=61  Identities=20%  Similarity=0.239  Sum_probs=50.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL------GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id~D~~   72 (433)
                      +++++|+++.|+.          ...++++++++.+|.+++|+|++||||||+.++|++.+      |..++++.++
T Consensus         5 ~l~~~nl~~~~~~----------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~   71 (506)
T PRK13549          5 LLEMKNITKTFGG----------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL   71 (506)
T ss_pred             eEEEeeeEEEeCC----------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence            5899999999975          34678888999999999999999999999999999865      3345555443

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.13  E-value=1.7e-06  Score=81.75  Aligned_cols=49  Identities=20%  Similarity=0.118  Sum_probs=42.6

Q ss_pred             ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++..
T Consensus         7 ~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244          7 SVKNLNLWYGS----------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             EeeeEEEEECC----------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            57889999964          34677888999999999999999999999999999863

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.13  E-value=1.5e-06  Score=81.27  Aligned_cols=61  Identities=26%  Similarity=0.150  Sum_probs=48.2

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++++.|+...         ..+.+.++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 l~~~~l~~~~~~~~---------~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~   65 (236)
T cd03253           1 IEFENVTFAYDPGR---------PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI   65 (236)
T ss_pred             CEEEEEEEEeCCCC---------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEh
Confidence            46789999995311         2567788999999999999999999999999999865    5556655443

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.13  E-value=1.8e-06  Score=81.73  Aligned_cols=50  Identities=20%  Similarity=0.020  Sum_probs=43.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+.           ..+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus         4 ~l~~~~l~~~~~~-----------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   53 (254)
T PRK10418          4 QIELRNIALQAAQ-----------PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL   53 (254)
T ss_pred             EEEEeCeEEEecc-----------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            5788999999932           2466777999999999999999999999999999864

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.12  E-value=1.6e-06  Score=83.66  Aligned_cols=50  Identities=24%  Similarity=0.236  Sum_probs=43.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .+++++|++.|+.          ...+.++++++..|.+++|+|++||||||+.+.|++.
T Consensus        39 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl   88 (286)
T PRK14275         39 HVVAKNFSIYYGE----------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRM   88 (286)
T ss_pred             EEEEeeeEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3678899999975          2356778899999999999999999999999999984

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.12  E-value=2.7e-06  Score=88.02  Aligned_cols=51  Identities=24%  Similarity=0.158  Sum_probs=46.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.||.          -..+.++++++..|..|+|+|.+||||||+.++|++.+
T Consensus         3 ~i~~~~ls~~~g~----------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~   53 (530)
T COG0488           3 MITLENLSLAYGD----------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL   53 (530)
T ss_pred             eEEEeeeEEeeCC----------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            7899999999987          44788899999999999999999999999999999876

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.11  E-value=1.6e-05  Score=67.86  Aligned_cols=24  Identities=38%  Similarity=0.547  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      .|+|+|++||||||+++.|++.+.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC
Confidence            378999999999999999999763

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.11  E-value=1.7e-06  Score=93.70  Aligned_cols=64  Identities=22%  Similarity=0.138  Sum_probs=52.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      .++++||++.|+...        ...+++.++++++|..|+|+|++||||||+++.|++.+    |...+++.++.
T Consensus       463 ~I~~~~vsf~Y~~~~--------~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~  530 (694)
T TIGR03375       463 EIEFRNVSFAYPGQE--------TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIR  530 (694)
T ss_pred             eEEEEEEEEEeCCCC--------ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence            367889999996421        23677888999999999999999999999999999977    77788776653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.10  E-value=2.5e-06  Score=90.66  Aligned_cols=62  Identities=23%  Similarity=0.190  Sum_probs=51.5

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++||++.|+.+.        -..+++.++++++|..++|+|++||||||+++.|++.+    |...+++.++
T Consensus       342 i~~~~vsf~y~~~~--------~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i  407 (582)
T PRK11176        342 IEFRNVTFTYPGKE--------VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL  407 (582)
T ss_pred             EEEEEEEEecCCCC--------CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEh
Confidence            67889999996422        12677888999999999999999999999999999977    7777777654

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.09  E-value=1.9e-06  Score=83.91  Aligned_cols=51  Identities=25%  Similarity=0.162  Sum_probs=44.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++.+++|++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus        45 ~l~i~nl~~~~~~----------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~   95 (305)
T PRK14264         45 KLSVEDLDVYYGD----------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMN   95 (305)
T ss_pred             eEEEEEEEEEeCC----------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            4788999999975          23677788999999999999999999999999999864

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.09  E-value=1.8e-06  Score=84.93  Aligned_cols=65  Identities=20%  Similarity=0.091  Sum_probs=50.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-------CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-------GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-------g~~~id~D~~   72 (433)
                      .++++||++.|+...      -....+.++++++.+|.+++|+|.|||||||+++.|++.+       |...+++.++
T Consensus        12 ~L~i~~l~~~~~~~~------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i   83 (330)
T PRK09473         12 LLDVKDLRVTFSTPD------GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREI   83 (330)
T ss_pred             eEEEeCeEEEEecCC------CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEEC
Confidence            478999999995310      0134678888999999999999999999999999999866       3345555544

>KOG3078|consensus

Probab=98.09  E-value=3.3e-06  Score=77.29  Aligned_cols=121  Identities=17%  Similarity=0.147  Sum_probs=76.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhCC---
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVDN---  110 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---  110 (433)
                      ++...+|+|+||+||+|++..+++.+++.|+.+.++.+.........|.-.+.   .....--+.+...+...+...   
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~   93 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ   93 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence            67889999999999999999999999999999998865422111111100000   000000011112233223222   


Q ss_pred             CcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCC
Q psy16778        111 LTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHF  157 (433)
Q Consensus       111 ~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~  157 (433)
                      .+.++++........+.+.+...  ..||.|.++.+.+.+|+..|.-++
T Consensus        94 ~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp  142 (235)
T KOG3078|consen   94 KGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHP  142 (235)
T ss_pred             cccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccC
Confidence            45777776655554444555444  799999999999999999986444

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.08  E-value=3.4e-06  Score=77.22  Aligned_cols=51  Identities=18%  Similarity=0.075  Sum_probs=45.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+++++++..|++          -+.+.+.+-.++.|...+|+|++||||||+.++++..+
T Consensus        31 li~l~~v~v~r~g----------k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~   81 (257)
T COG1119          31 LIELKNVSVRRNG----------KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH   81 (257)
T ss_pred             eEEecceEEEECC----------EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence            5789999999987          55777888999999999999999999999999999864

>PRK05439 pantothenate kinase; Provisional

Probab=98.08  E-value=2.4e-05  Score=75.55  Aligned_cols=41  Identities=24%  Similarity=0.259  Sum_probs=34.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CeEEeCCCCCcc
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG-------VKFIDGDHLHPQ   75 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg-------~~~id~D~~~~~   75 (433)
                      .+.+.+|+|+|++||||||+++.|+..++       +.++..|.++..
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~  130 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYP  130 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccC
Confidence            45667999999999999999999998763       468999998743

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.08  E-value=2e-06  Score=85.43  Aligned_cols=128  Identities=18%  Similarity=0.129  Sum_probs=73.1

Q ss_pred             cceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-----c
Q psy16778          7 GNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS-----N   77 (433)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~-----~   77 (433)
                      +|++.|+...           + ++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++....     .
T Consensus         4 ~l~~~~~~~~-----------~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~   71 (354)
T TIGR02142         4 RFSKRLGDFS-----------L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLP   71 (354)
T ss_pred             EEEEEECCEE-----------E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccc
Confidence            7888997511           2 566889999999999999999999999999976    66667665543210     0


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      ......++.+|+....+.++..+++........      .........+.+...+  +--+++..+..+....++|-
T Consensus        72 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~------~~~~~~~~~~~l~~~g--L~~~~~~~~~~LSgGqkqRv  140 (354)
T TIGR02142        72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRAR------PSERRISFERVIELLG--IGHLLGRLPGRLSGGEKQRV  140 (354)
T ss_pred             hhhCCeEEEecCCccCCCCcHHHHHHHHhhccC------hhHHHHHHHHHHHHcC--ChhHhcCChhhCCHHHHHHH
Confidence            112234666776544444445455433221110      0000112334444432  22345556666666665553

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.07  E-value=1.8e-06  Score=89.67  Aligned_cols=58  Identities=19%  Similarity=0.240  Sum_probs=48.0

Q ss_pred             cccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          5 NFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 ~~nl~~~~~~----------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   62 (491)
T PRK10982          1 MSNISKSFPG----------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI   62 (491)
T ss_pred             CCceEEEeCC----------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEEC
Confidence            4688999975          23677888999999999999999999999999999965    6666766554

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.07  E-value=3.9e-06  Score=79.62  Aligned_cols=63  Identities=19%  Similarity=0.150  Sum_probs=49.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      .++++++++.|+...        -..+.++++++.+|.+++|+|++||||||+.+.|++.+    |..++++.++
T Consensus        19 ~i~~~~l~~~~~~~~--------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i   85 (257)
T cd03288          19 EIKIHDLCVRYENNL--------KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDI   85 (257)
T ss_pred             eEEEEEEEEEeCCCC--------CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEh
Confidence            467899999997521        12566777999999999999999999999999999965    5556655443

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.07  E-value=2.6e-06  Score=89.36  Aligned_cols=63  Identities=22%  Similarity=0.147  Sum_probs=51.8

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      ++++||++.|+...        -..+++.++++++|..++|+|++||||||+.+.|++.+    |...+++.++.
T Consensus       321 i~~~~v~f~y~~~~--------~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~  387 (529)
T TIGR02857       321 LEFSGLSVAYPGRR--------APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLA  387 (529)
T ss_pred             EEEEEEEEECCCCC--------cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehh
Confidence            67889999996422        12577888999999999999999999999999999977    66777776653

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.06  E-value=2.3e-06  Score=92.97  Aligned_cols=61  Identities=25%  Similarity=0.193  Sum_probs=51.4

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++||++.|+..         ...++++++++++|..++|+|++||||||+++.|++.+    |...+++-++
T Consensus       474 I~~~~vsf~y~~~---------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i  538 (708)
T TIGR01193       474 IVINDVSYSYGYG---------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL  538 (708)
T ss_pred             EEEEEEEEEcCCC---------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEH
Confidence            6788999999631         23677888999999999999999999999999999976    7777777655

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.06  E-value=3.8e-06  Score=72.74  Aligned_cols=59  Identities=29%  Similarity=0.274  Sum_probs=50.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGD   70 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D   70 (433)
                      .+++.++++.||.          -+-..+++++.-.|++++|+|.|||||||+.+.|+.++    |...++..
T Consensus         6 LL~V~~lsk~Yg~----------~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r   68 (258)
T COG4107           6 LLSVSGLSKLYGP----------GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMR   68 (258)
T ss_pred             ceeehhhhhhhCC----------CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcC
Confidence            5788999999987          34566889999999999999999999999999999988    65555553

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.06  E-value=2.7e-06  Score=80.87  Aligned_cols=51  Identities=20%  Similarity=0.158  Sum_probs=44.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+.++.++++|+.          -..++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         8 ~~~~~~~~~~~~~----------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (261)
T PRK14263          8 VMDCKLDKIFYGN----------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMN   58 (261)
T ss_pred             eEEEEeEEEEeCC----------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence            5678888999976          23677888999999999999999999999999999864

>KOG0055|consensus

Probab=98.05  E-value=4.6e-06  Score=91.80  Aligned_cols=81  Identities=19%  Similarity=0.070  Sum_probs=62.1

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc-cc
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-SN   77 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-~~   77 (433)
                      +++++|+|.|..-+       ....++++++++..|+.++|+|+|||||||+..+|.+-|    |...||+.++..- ..
T Consensus       988 I~~~~V~F~YPsRP-------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~ 1060 (1228)
T KOG0055|consen  988 IEFRNVSFAYPTRP-------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLK 1060 (1228)
T ss_pred             EEEeeeEeeCCCCC-------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHH
Confidence            57889999996422       356888999999999999999999999999999999877    8889998887532 11


Q ss_pred             ccccccCCCCCCc
Q psy16778         78 IDKMSAKQPLNDE   90 (433)
Q Consensus        78 ~~~~~~~~~~~~~   90 (433)
                      +-+...+.+-|+|
T Consensus      1061 ~LR~~i~lVsQEP 1073 (1228)
T KOG0055|consen 1061 WLRKQIGLVSQEP 1073 (1228)
T ss_pred             HHHHhcceeccCc
Confidence            1222335555554

>KOG0055|consensus

Probab=98.05  E-value=3e-06  Score=93.24  Aligned_cols=82  Identities=18%  Similarity=0.102  Sum_probs=64.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc-c
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-S   76 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-~   76 (433)
                      .++++||.|+|..-       ++...++.+++.++.|+.++|+|+|||||||+.++|.+-+    |-.++|+.++..- .
T Consensus       350 ~ief~nV~FsYPsR-------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~  422 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSR-------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNL  422 (1228)
T ss_pred             ceEEEEEEecCCCC-------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcch
Confidence            36788888888651       2445777899999999999999999999999999999977    8899999988632 1


Q ss_pred             cccccccCCCCCCc
Q psy16778         77 NIDKMSAKQPLNDE   90 (433)
Q Consensus        77 ~~~~~~~~~~~~~~   90 (433)
                      .+-....|.+.|++
T Consensus       423 ~~lr~~iglV~QeP  436 (1228)
T KOG0055|consen  423 KWLRSQIGLVSQEP  436 (1228)
T ss_pred             HHHHhhcCeeeech
Confidence            22233557777775

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.04  E-value=3.1e-06  Score=88.62  Aligned_cols=50  Identities=20%  Similarity=0.062  Sum_probs=44.0

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++|+++.|+.          ...+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus         1 l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   50 (520)
T TIGR03269         1 IEVKNLTKKFDG----------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD   50 (520)
T ss_pred             CEEEEEEEEECC----------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            468899999975          24677888999999999999999999999999999973

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.04  E-value=0.00012  Score=75.79  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=31.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLH   73 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~   73 (433)
                      ...+|+|.|+|||||||+++.|++.+ +...|..|.+.
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~  101 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN  101 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence            34699999999999999999999987 55688888874

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.04  E-value=2.4e-06  Score=79.05  Aligned_cols=64  Identities=25%  Similarity=0.282  Sum_probs=48.6

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +.++++++.|+...      -+...+.++++++..|.+++|+|++||||||+.+.|++.+    |...+++..+
T Consensus         2 l~~~~l~~~~~~~~------~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~   69 (220)
T TIGR02982         2 ISIRNLNHYYGHGS------LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQEL   69 (220)
T ss_pred             EEEEEEEEEccCCC------cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEh
Confidence            56789999986411      0023677888999999999999999999999999999865    4455554443

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.03  E-value=3.3e-06  Score=89.47  Aligned_cols=63  Identities=17%  Similarity=0.168  Sum_probs=51.7

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      ++++||++.|+...        ...++++++++++|..++|+|++||||||+.+.|++.+    |...+++.++.
T Consensus       339 i~~~~v~f~y~~~~--------~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~  405 (574)
T PRK11160        339 LTLNNVSFTYPDQP--------QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIA  405 (574)
T ss_pred             EEEEEEEEECCCCC--------CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence            67889999996421        12577888999999999999999999999999999977    77777776553

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.03  E-value=3.5e-06  Score=91.43  Aligned_cols=64  Identities=25%  Similarity=0.236  Sum_probs=52.7

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      ++++||++.|+..+       +...+++.++++++|+.++|+|++||||||+.+.|.+.+    |...+|+.++.
T Consensus       479 I~~~nVsf~Y~~~~-------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~  546 (711)
T TIGR00958       479 IEFQDVSFSYPNRP-------DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLV  546 (711)
T ss_pred             EEEEEEEEECCCCC-------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHH
Confidence            67889999996421       123678899999999999999999999999999999977    77777776553

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.03  E-value=4.1e-05  Score=74.13  Aligned_cols=37  Identities=35%  Similarity=0.545  Sum_probs=33.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL   72 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~   72 (433)
                      .++.+|+|+||+||||||++..|++.++..+|+.|.+
T Consensus         2 ~~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          2 MKPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            3457999999999999999999999999999999985

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.03  E-value=3.4e-06  Score=88.84  Aligned_cols=63  Identities=25%  Similarity=0.114  Sum_probs=51.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      .++++|+++.|+...        -..+++.++++++|..++|+|++||||||+++.|++.+    |...+++.++
T Consensus       316 ~i~~~~v~~~y~~~~--------~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i  382 (544)
T TIGR01842       316 HLSVENVTIVPPGGK--------KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADL  382 (544)
T ss_pred             eEEEEEEEEEcCCCC--------ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeh
Confidence            367889999996421        13578888999999999999999999999999999977    6667766554

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.02  E-value=4e-06  Score=77.23  Aligned_cols=54  Identities=22%  Similarity=0.172  Sum_probs=43.2

Q ss_pred             cccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778          5 NFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      +-+|++.|+.+.           . ++++++.+ .+++|+|++||||||+.+.|++.+    |...+++.+
T Consensus         3 ~~~l~~~~~~~~-----------~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~   60 (214)
T cd03297           3 CVDIEKRLPDFT-----------L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTV   60 (214)
T ss_pred             eeeeeEecCCee-----------e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe
Confidence            458999998722           2 77788999 999999999999999999999865    545555443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.02  E-value=3.8e-06  Score=78.02  Aligned_cols=54  Identities=22%  Similarity=0.236  Sum_probs=44.0

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +.++++++.|....      .....+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus         4 ~~~~~~~~~~~~~~------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234           4 LPWWDVGLKAKNWN------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             ceeecceeeeecCc------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence            45788888886421      1134677888999999999999999999999999999865

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.02  E-value=3.6e-06  Score=89.07  Aligned_cols=62  Identities=26%  Similarity=0.158  Sum_probs=52.0

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      +++++|++.|+.         +...+++.++++++|+.++|+|++||||||+.+.|.+.+    |...+|+-++.
T Consensus       329 I~f~~vsf~y~~---------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~  394 (567)
T COG1132         329 IEFENVSFSYPG---------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIR  394 (567)
T ss_pred             EEEEEEEEEcCC---------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehh
Confidence            578899999974         134788899999999999999999999999999999977    66777665553

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.01  E-value=2.9e-06  Score=88.37  Aligned_cols=51  Identities=22%  Similarity=0.199  Sum_probs=44.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++++++++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         1 ~l~i~~l~~~~~~----------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~   51 (500)
T TIGR02633         1 LLEMKGIVKTFGG----------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY   51 (500)
T ss_pred             CEEEEeEEEEeCC----------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3688999999975          23677888999999999999999999999999999864

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.01  E-value=3.6e-06  Score=89.89  Aligned_cols=55  Identities=20%  Similarity=0.051  Sum_probs=46.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++|++.|+...      -....+.++++++.+|.+++|+|++||||||+++.|++.+
T Consensus        12 ~l~v~~l~~~y~~~~------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll   66 (623)
T PRK10261         12 VLAVENLNIAFMQEQ------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL   66 (623)
T ss_pred             eEEEeceEEEecCCC------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            578999999996411      0023677888999999999999999999999999999976

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.01  E-value=3.9e-06  Score=67.81  Aligned_cols=45  Identities=20%  Similarity=0.110  Sum_probs=37.0

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC
Q psy16778         27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH   73 (433)
Q Consensus        27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~   73 (433)
                      ++.+.++++..+..++|.|+|||||||+++.+.  -|...++++++.
T Consensus         4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~   48 (107)
T cd00820           4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI--KRKHRLVGDDNV   48 (107)
T ss_pred             EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHH
Confidence            345566778999999999999999999999988  466677777764

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.00  E-value=4.2e-06  Score=89.54  Aligned_cols=51  Identities=24%  Similarity=0.128  Sum_probs=44.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++|++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus       312 ~l~~~~l~~~y~~----------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~  362 (638)
T PRK10636        312 LLKMEKVSAGYGD----------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL  362 (638)
T ss_pred             eEEEEeeEEEeCC----------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4678889999975          34677888999999999999999999999999999865

>PLN03073 ABC transporter F family; Provisional

Probab=98.00  E-value=3.6e-06  Score=90.81  Aligned_cols=50  Identities=16%  Similarity=0.066  Sum_probs=44.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +++++++++.||.          ...+++.++++..|.+++|+|++||||||+.++|++.
T Consensus       177 ~I~i~nls~~y~~----------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~  226 (718)
T PLN03073        177 DIHMENFSISVGG----------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMH  226 (718)
T ss_pred             eEEEceEEEEeCC----------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            5789999999975          2367888899999999999999999999999999974

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.00  E-value=4.3e-06  Score=79.62  Aligned_cols=61  Identities=18%  Similarity=0.165  Sum_probs=46.7

Q ss_pred             ccccccceeeeccCC----------ccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWP----------PQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+++.||.++|.--.          .....+-.-..+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~   74 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL   74 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            467889999996421          0011222333677899999999999999999999999999999865

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.99  E-value=3e-06  Score=99.39  Aligned_cols=83  Identities=13%  Similarity=0.053  Sum_probs=59.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.|+...        ...++++++++.+|.+++|+|++||||||+.++|++.+    |...+++.++.....
T Consensus       928 ~L~I~nLsK~y~~~~--------k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~  999 (2272)
T TIGR01257       928 GVCVKNLVKIFEPSG--------RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLD  999 (2272)
T ss_pred             eEEEEeEEEEecCCC--------ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHH
Confidence            577899999995311        23677888999999999999999999999999999976    666777765532111


Q ss_pred             ccccccCCCCCCcCC
Q psy16778         78 IDKMSAKQPLNDEDR   92 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~   92 (433)
                      ......|+.+|....
T Consensus      1000 ~~r~~IG~~pQ~~~L 1014 (2272)
T TIGR01257      1000 AVRQSLGMCPQHNIL 1014 (2272)
T ss_pred             HHhhcEEEEecCCcC
Confidence            111234666665433

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=97.99  E-value=5.6e-06  Score=76.48  Aligned_cols=60  Identities=17%  Similarity=0.211  Sum_probs=46.7

Q ss_pred             ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++.++.+.|+..         ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...++...+
T Consensus         2 ~~~~~~~~~~~~---------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~   65 (218)
T cd03290           2 QVTNGYFSWGSG---------LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNE   65 (218)
T ss_pred             eeeeeEEecCCC---------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccc
Confidence            455677777642         13567788999999999999999999999999999875    5566655443

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.99  E-value=3.9e-06  Score=87.18  Aligned_cols=50  Identities=18%  Similarity=0.148  Sum_probs=44.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +++++++++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.
T Consensus       260 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~  309 (490)
T PRK10938        260 RIVLNNGVVSYND----------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD  309 (490)
T ss_pred             eEEEeceEEEECC----------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4788999999975          2367788899999999999999999999999999984

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=97.99  E-value=4e-06  Score=87.97  Aligned_cols=51  Identities=18%  Similarity=0.077  Sum_probs=44.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++|++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus       319 ~l~~~~l~~~~~~----------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~  369 (530)
T PRK15064        319 ALEVENLTKGFDN----------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL  369 (530)
T ss_pred             eEEEEeeEEeeCC----------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4678899999975          23677888999999999999999999999999999854

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.99  E-value=5.8e-06  Score=81.21  Aligned_cols=63  Identities=17%  Similarity=0.080  Sum_probs=49.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---------CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---------GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---------g~~~id~D~~   72 (433)
                      +++++++++.|....        -..++++++++.+|.+++|+|++||||||+.+.|++..         |...+++.++
T Consensus        80 ~i~~~nls~~y~~~~--------~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i  151 (329)
T PRK14257         80 VFEIRNFNFWYMNRT--------KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNT  151 (329)
T ss_pred             eEEEEeeEEEecCCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence            467889999996422        12577788999999999999999999999999999764         4455665554

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=97.98  E-value=4e-06  Score=89.53  Aligned_cols=71  Identities=23%  Similarity=0.209  Sum_probs=52.0

Q ss_pred             ccccccceeeeccC-CccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMW-PPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++||++.|+.. ............++++++++.+|.+++|+|++||||||+++.|++.+    |...+++.++
T Consensus       313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i  388 (623)
T PRK10261        313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRI  388 (623)
T ss_pred             eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence            47889999999621 00000000123677889999999999999999999999999999865    6667766554

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=97.97  E-value=4.3e-06  Score=88.08  Aligned_cols=62  Identities=18%  Similarity=0.119  Sum_probs=50.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      .++++|+++.|+...         ..+++.++++++|..++|+|++||||||+++.|++.+    |...+++-++
T Consensus       322 ~i~~~~v~f~y~~~~---------~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~  387 (547)
T PRK10522        322 TLELRNVTFAYQDNG---------FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV  387 (547)
T ss_pred             eEEEEEEEEEeCCCC---------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence            367889999995311         2578888999999999999999999999999999876    6666666554

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=97.97  E-value=6.6e-05  Score=72.94  Aligned_cols=155  Identities=12%  Similarity=0.088  Sum_probs=100.7

Q ss_pred             hhhcceeecccccCCC--CCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHH
Q psy16778        222 ALKVLRIRPRVMRDLS--KRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAE  299 (433)
Q Consensus       222 a~~~~~l~pr~l~~~~--~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~  299 (433)
                      .|+++.|.|..|...+  ++|++|+++|.++++||+++++.      -.-...+|+.|.+.|...++--   .+.|+..+
T Consensus         6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~------t~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~   76 (326)
T PRK05458          6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQ------TIIDEKIAEWLAENGYFYIMHR---FDPEARIP   76 (326)
T ss_pred             CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEeccc------chhHHHHHHHHHHcCCEEEEec---CCHHHHHH
Confidence            4889999999887776  78999999999999999999983      2677789999999999987777   25676542


Q ss_pred             ---h-CCCCcceEEEeeccCHHHHHHHHHHHHHcCC--cEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCcc
Q psy16778        300 ---K-TPQTTKWFQLYIYRDREITKSLVQRAEKAGY--KALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTT  373 (433)
Q Consensus       300 ---~-~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~--~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~~  373 (433)
                         . .+.+ ...-..+....+.. +.++.-.++|+  ..|++++  +. |             .+..+.++.+....  
T Consensus        77 ~~r~~~~~~-l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~iD~--a~-g-------------h~~~~~e~I~~ir~--  136 (326)
T PRK05458         77 FIKDMHEQG-LIASISVGVKDDEY-DFVDQLAAEGLTPEYITIDI--AH-G-------------HSDSVINMIQHIKK--  136 (326)
T ss_pred             HHHhccccc-cEEEEEecCCHHHH-HHHHHHHhcCCCCCEEEEEC--CC-C-------------chHHHHHHHHHHHh--
Confidence               2 2222 23344444433332 33444446655  8887765  22 1             12223332221110  


Q ss_pred             hhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778        374 KWFQLYIYRDREITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       374 ~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT  405 (433)
                      .|=...+......|.+.++.+.++|++++.+.
T Consensus       137 ~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg  168 (326)
T PRK05458        137 HLPETFVIAGNVGTPEAVRELENAGADATKVG  168 (326)
T ss_pred             hCCCCeEEEEecCCHHHHHHHHHcCcCEEEEC
Confidence            12123445555669999999999999997764

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.97  E-value=3.2e-06  Score=99.14  Aligned_cols=93  Identities=13%  Similarity=0.058  Sum_probs=65.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.|+...        ..+++++++++.+|++++|.|++||||||+.++|++.+    |...+++.++.....
T Consensus      1937 ~L~v~nLsK~Y~~~~--------~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~ 2008 (2272)
T TIGR01257      1937 ILRLNELTKVYSGTS--------SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNIS 2008 (2272)
T ss_pred             eEEEEEEEEEECCCC--------ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHH
Confidence            477899999997521        23677888999999999999999999999999999976    777777665532111


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHH
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRI  102 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~  102 (433)
                      ......|+.+|.......++..+.+
T Consensus      2009 ~~r~~IGy~pQ~~~L~~~LTv~E~L 2033 (2272)
T TIGR01257      2009 DVHQNMGYCPQFDAIDDLLTGREHL 2033 (2272)
T ss_pred             HHhhhEEEEeccccCCCCCCHHHHH
Confidence            1122357777765444444444433

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=97.97  E-value=8.6e-06  Score=81.51  Aligned_cols=63  Identities=25%  Similarity=0.160  Sum_probs=51.1

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc-ccccccccCCCCCC
Q psy16778         27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-SNIDKMSAKQPLND   89 (433)
Q Consensus        27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-~~~~~~~~~~~~~~   89 (433)
                      .+++.+++...|..++|+|||||||||++|.|.+..    |...+|+-++..+ .+.-+...||..|+
T Consensus       351 il~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQd  418 (580)
T COG4618         351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQD  418 (580)
T ss_pred             ceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCccc
Confidence            566889999999999999999999999999999976    8889999888643 22223445777776

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=97.97  E-value=5.4e-06  Score=86.99  Aligned_cols=70  Identities=21%  Similarity=0.117  Sum_probs=49.4

Q ss_pred             ccccccceeeeccC-CccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCC
Q psy16778          2 AVSNFGNWRYWGMW-PPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDH   71 (433)
Q Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~   71 (433)
                      +++++++++.|+.. .......-....+.++++++.+|.+++|+|++||||||+.+.|++.+   |...+++.+
T Consensus       275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~  348 (529)
T PRK15134        275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQP  348 (529)
T ss_pred             cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEE
Confidence            57899999999520 00000000023677889999999999999999999999999999865   444555543

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=97.96  E-value=5.4e-06  Score=89.89  Aligned_cols=64  Identities=25%  Similarity=0.211  Sum_probs=52.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      .+++++|++.|+...        ...+++.++++++|..++|+|++||||||+++.|++.+    |...+++-++.
T Consensus       455 ~i~~~~vsf~y~~~~--------~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~  522 (694)
T TIGR01846       455 AITFENIRFRYAPDS--------PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA  522 (694)
T ss_pred             eEEEEEEEEEcCCCC--------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehh
Confidence            367889999996422        23577888999999999999999999999999999977    77778776653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.96  E-value=4.6e-06  Score=75.33  Aligned_cols=46  Identities=30%  Similarity=0.429  Sum_probs=39.2

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778         27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus        27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      .++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~   56 (190)
T TIGR01166         7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPL   56 (190)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEc
Confidence            677888999999999999999999999999999865    5566665544

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=97.96  E-value=7.4e-06  Score=79.56  Aligned_cols=62  Identities=18%  Similarity=0.107  Sum_probs=49.1

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      ++++|+++-|-++.+         .+.+.++++++|++++|+|.+||||||+++.|.+.+    |-.++|+..+-
T Consensus       323 lelrnvrfay~~~~F---------hvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~  388 (546)
T COG4615         323 LELRNVRFAYQDNAF---------HVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVS  388 (546)
T ss_pred             eeeeeeeeccCcccc---------eecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCC
Confidence            567888888866431         344556899999999999999999999999999966    77777776653

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=97.96  E-value=4.4e-06  Score=89.48  Aligned_cols=51  Identities=14%  Similarity=0.050  Sum_probs=44.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++||++.|+.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus       319 ~l~~~~l~~~~~~----------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~  369 (635)
T PRK11147        319 VFEMENVNYQIDG----------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL  369 (635)
T ss_pred             eEEEeeeEEEECC----------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4778899999975          23678888999999999999999999999999999865

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.96  E-value=5.3e-06  Score=88.30  Aligned_cols=62  Identities=19%  Similarity=0.095  Sum_probs=51.6

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      ++++++++.|+..         -..+++.++++++|..|+|+|++||||||+.+.|++.+    |...+|+.++.
T Consensus       341 i~~~~v~f~y~~~---------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~  406 (592)
T PRK10790        341 IDIDNVSFAYRDD---------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS  406 (592)
T ss_pred             EEEEEEEEEeCCC---------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh
Confidence            6778899988531         12577888999999999999999999999999999977    77788876653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	433
1knq_A	175	Crystal Structure Of Gluconate Kinase Length = 175		2e-33
1ko4_A	175	Crystal Structure Of Gluconate Kinase Length = 175		5e-31
2nzl_A	392	Crystal Structure Of Human Hydroxyacid Oxidase 1 Le		3e-28
2nzl_A	392	Crystal Structure Of Human Hydroxyacid Oxidase 1 Le		2e-18
2w0u_A	370	Crystal Structure Of Human Glycolate Oxidase In Com		3e-28
2w0u_A	370	Crystal Structure Of Human Glycolate Oxidase In Com		2e-18
2rdt_A	387	Crystal Structure Of Human Glycolate Oxidase (Go) I		3e-28
2rdt_A	387	Crystal Structure Of Human Glycolate Oxidase (Go) I		2e-18
1gyl_A	369	Involvement Of Tyr24 And Trp108 In Substrate Bindin		3e-23
1gyl_A	369	Involvement Of Tyr24 And Trp108 In Substrate Bindin		1e-13
1gox_A	370	Refined Structure Of Spinach Glycolate Oxidase At 2		3e-23
1gox_A	370	Refined Structure Of Spinach Glycolate Oxidase At 2		1e-13
1al7_A	359	Three-Dimensional Structures Of Glycolate Oxidase W		3e-23
1al7_A	359	Three-Dimensional Structures Of Glycolate Oxidase W		1e-13
1tb3_A	352	Crystal Structure Analysis Of Recombinant Rat Kidne		8e-23
1tb3_A	352	Crystal Structure Analysis Of Recombinant Rat Kidne		3e-12
3sgz_A	352	High Resolution Crystal Structure Of Rat Long Chain		3e-22
3sgz_A	352	High Resolution Crystal Structure Of Rat Long Chain		3e-12
4eun_A	200	Crystal Structure Of A Sugar Kinase (Target Efi-502		1e-21
3t61_A	202	Crystal Structure Of A Gluconokinase From Sinorhizo		6e-16
2du2_A	374	Crystal Structure Analysis Of The L-Lactate Oxidase		3e-15
2du2_A	374	Crystal Structure Analysis Of The L-Lactate Oxidase		3e-07
2j6x_A	374	The Crystal Structure Of Lactate Oxidase Length = 3		3e-15
2j6x_A	374	The Crystal Structure Of Lactate Oxidase Length = 3		3e-07
2nli_A	368	Crystal Structure Of The Complex Between L-Lactate		3e-15
2nli_A	368	Crystal Structure Of The Complex Between L-Lactate		3e-07
1sze_A	511	L230a Mutant Flavocytochrome B2 With Benzoylformate		3e-13
1sze_A	511	L230a Mutant Flavocytochrome B2 With Benzoylformate		2e-08
2cdh_0	226	Architecture Of The Thermomyces Lanuginosus Fungal		3e-13
2cdh_0	226	Architecture Of The Thermomyces Lanuginosus Fungal		2e-07
1ldc_A	511	X-Ray Structure Of Two Complexes Of The Y143f Flavo		3e-13
1ldc_A	511	X-Ray Structure Of Two Complexes Of The Y143f Flavo		2e-08
1fcb_A	511	Molecular Structure Of Flavocytochrome B2 At 2.4 An		3e-13
1fcb_A	511	Molecular Structure Of Flavocytochrome B2 At 2.4 An		2e-08
2oz0_A	511	Mechanistic And Structural Studies Of H373q Flavocy		3e-13
2oz0_A	511	Mechanistic And Structural Studies Of H373q Flavocy		3e-08
1ltd_A	506	The 2.6 Angstroms Refined Structure Of The Escheric		3e-13
1ltd_A	506	The 2.6 Angstroms Refined Structure Of The Escheric		2e-08
1kbj_A	412	Crystallographic Study Of The Recombinant Flavin-Bi		4e-13
1kbj_A	412	Crystallographic Study Of The Recombinant Flavin-Bi		3e-08
1szf_A	511	A198g:l230a Mutant Flavocytochrome B2 With Pyruvate		7e-13
1szf_A	511	A198g:l230a Mutant Flavocytochrome B2 With Pyruvate		2e-08
1qcw_A	410	Flavocytochrome B2, Arg289lys Mutant Length = 410		1e-12
1qcw_A	410	Flavocytochrome B2, Arg289lys Mutant Length = 410		8e-08
2a7n_A	380	Crystal Structure Of The G81a Mutant Of The Active		1e-12
2a7n_A	380	Crystal Structure Of The G81a Mutant Of The Active		4e-08
1huv_A	380	Crystal Structure Of A Soluble Mutant Of The Membra		4e-12
1huv_A	380	Crystal Structure Of A Soluble Mutant Of The Membra		4e-08

>pdb|1KNQ|A Chain A, Crystal Structure Of Gluconate Kinase Length = 175

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 100/159 (62%), Gaps = 2/159 (1%)
Query: 40  VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI 99
           ++V+MGVSGSGKS +   +A +L   F+DGD LHP+ NI+KM++ +PLND+DR+PWL  +
Sbjct: 10  IYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQAL 69
Query: 100 NRIIHQLNVDNLTGVLVCSALXXXXXXXXXXXX-XVVFIYLKAEFGVILSRLQKRAEHFM 158
           N     +   N   ++VCSAL              + FIYLK +F VI SRL+ R  HF 
Sbjct: 70  NDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF 129
Query: 159 PADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKS 197
              +L +QF+TL+EP    E DV  V +++PLEG+V+ +
Sbjct: 130 KTQMLVTQFETLQEPGA-DETDVLVVDIDQPLEGVVAST 167

>pdb|1KO4|A Chain A, Crystal Structure Of Gluconate Kinase Length = 175

Iteration: 1
 Score =  132 bits (331), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/159 (42%), Positives = 96/159 (60%), Gaps = 2/159 (1%)
Query: 40  VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI 99
           ++V+ GVSGSGKS +   +A +L   F+DGD LHP+ NI+K ++ +PLND+DR+PWL  +
Sbjct: 10  IYVLXGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKXASGEPLNDDDRKPWLQAL 69
Query: 100 NRIIHQLNVDNLTGVLVCSALXXXXXXXXXXXX-XVVFIYLKAEFGVILSRLQKRAEHFM 158
           N         N   ++VCSAL              + FIYLK +F VI SRL+ R  HF 
Sbjct: 70  NDAAFAXQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF 129
Query: 159 PADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKS 197
               L +QF+TL+EP    E DV  V +++PLEG+V+ +
Sbjct: 130 KTQXLVTQFETLQEPGA-DETDVLVVDIDQPLEGVVAST 167

>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392

Iteration: 1
 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 28/186 (15%)
Query: 212 FVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLVT 243
            +C++D+EQ A  VL                            ++ PR++R++++  L T
Sbjct: 27  LICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLST 86
Query: 244 DALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYXXXXXXXXXXXXXAEKTPQ 303
             LG  V +PI V   AMQ++AH +GE+    A   +G                AE  P+
Sbjct: 87  SVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPE 146
Query: 304 TTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIE 363
             +W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT   G R  D+RN+F +P  L ++
Sbjct: 147 ALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMK 206
Query: 364 ELAEKT 369
                T
Sbjct: 207 NFETST 212

>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           +IEE+AE  P+  +W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT   G R  D+RN
Sbjct: 136 SIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRN 195
Query: 421 KFNMPSHLK 429
           +F +P  L+
Sbjct: 196 RFKLPPQLR 204

>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 28/186 (15%)
Query: 212 FVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLVT 243
            +C++D+EQ A  VL                            ++ PR++R++++  L T
Sbjct: 5   LICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLST 64
Query: 244 DALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYXXXXXXXXXXXXXAEKTPQ 303
             LG  V +PI V   AMQ++AH +GE+    A   +G                AE  P+
Sbjct: 65  SVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPE 124
Query: 304 TTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIE 363
             +W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT   G R  D+RN+F +P  L ++
Sbjct: 125 ALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMK 184
Query: 364 ELAEKT 369
                T
Sbjct: 185 NFETST 190

>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           +IEE+AE  P+  +W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT   G R  D+RN
Sbjct: 114 SIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRN 173
Query: 421 KFNMPSHLK 429
           +F +P  L+
Sbjct: 174 RFKLPPQLR 182

>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 28/186 (15%)
Query: 212 FVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLVT 243
            +C++D+EQ A  VL                            ++ PR++R++++  L T
Sbjct: 22  LICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLST 81
Query: 244 DALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYXXXXXXXXXXXXXAEKTPQ 303
             LG  V +PI V   AMQ++AH +GE+    A   +G                AE  P+
Sbjct: 82  SVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPE 141
Query: 304 TTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIE 363
             +W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT   G R  D+RN+F +P  L ++
Sbjct: 142 ALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMK 201
Query: 364 ELAEKT 369
                T
Sbjct: 202 NFETST 207

>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           +IEE+AE  P+  +W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT   G R  D+RN
Sbjct: 131 SIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRN 190
Query: 421 KFNMPSHLK 429
           +F +P  L+
Sbjct: 191 RFKLPPQLR 199

>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A   +  RPR++ D++   + T  LG  + +PI ++P AMQK+AH EGE   A A    G
Sbjct: 41  AFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAG 100
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
            I              A   P   ++FQLY+Y+DR +   LV+RAE+AG+KA+ LTVDT 
Sbjct: 101 TIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 159
Query: 342 VFGTRYADIRNKFNMPSHLNIEEL 365
             G R ADI+N+F +P  L ++  
Sbjct: 160 RLGRREADIKNRFVLPPFLTLKNF 183

>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           ++EE+A   P   ++FQLY+Y+DR +   LV+RAE+AG+KA+ LTVDT   G R ADI+N
Sbjct: 112 SVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKN 170
Query: 421 KFNMPSHL 428
           +F +P  L
Sbjct: 171 RFVLPPFL 178

>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A   +  RPR++ D++   + T  LG  + +PI ++P AMQK+AH EGE   A A    G
Sbjct: 42  AFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAG 101
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
            I              A   P   ++FQLY+Y+DR +   LV+RAE+AG+KA+ LTVDT 
Sbjct: 102 TIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160
Query: 342 VFGTRYADIRNKFNMPSHLNIEEL 365
             G R ADI+N+F +P  L ++  
Sbjct: 161 RLGRREADIKNRFVLPPFLTLKNF 184

>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           ++EE+A   P   ++FQLY+Y+DR +   LV+RAE+AG+KA+ LTVDT   G R ADI+N
Sbjct: 113 SVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKN 171
Query: 421 KFNMPSHL 428
           +F +P  L
Sbjct: 172 RFVLPPFL 179

>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359

Iteration: 1
 Score =  106 bits (264), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A   +  RPR++ D++   + T  LG  + +PI ++P AMQK+AH EGE   A A    G
Sbjct: 41  AFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAG 100
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
            I              A   P   ++FQLY+Y+DR +   LV+RAE+AG+KA+ LTVDT 
Sbjct: 101 TIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 159
Query: 342 VFGTRYADIRNKFNMPSHLNIEEL 365
             G R ADI+N+F +P  L ++  
Sbjct: 160 RLGRREADIKNRFVLPPFLTLKNF 183

>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           ++EE+A   P   ++FQLY+Y+DR +   LV+RAE+AG+KA+ LTVDT   G R ADI+N
Sbjct: 112 SVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKN 170
Query: 421 KFNMPSHL 428
           +F +P  L
Sbjct: 171 RFVLPPFL 178

>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352

Iteration: 1
 Score =  104 bits (260), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 77/144 (53%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A K +R+RPR +RD+SK    T   G  +  PI +SP A   +A  +GE   A A  E  
Sbjct: 40  AFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEAN 99
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
             Y                 P+  +WFQLY+  D +  K +VQRAE  G+KALV+T+DT 
Sbjct: 100 ICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTP 159
Query: 342 VFGTRYADIRNKFNMPSHLNIEEL 365
           V G R  D RN+ N+ +++ +++L
Sbjct: 160 VLGNRRRDKRNQLNLEANILLKDL 183

>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           ++E++    P+  +WFQLY+  D +  K +VQRAE  G+KALV+T+DT V G R  D RN
Sbjct: 111 SLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRN 170
Query: 421 KFNMPSHL 428
           + N+ +++
Sbjct: 171 QLNLEANI 178

>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352

Iteration: 1
 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 78/152 (51%), Gaps = 3/152 (1%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A K +R+RPR +RD+SK    T   G  +  PI +SP A   +A  +GE   A A  E  
Sbjct: 40  AFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEAN 99
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
             Y                 P+  +WFQLY+  D +  K +VQRAE  G+KALV+T+DT 
Sbjct: 100 ICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTP 159
Query: 342 VFGTRYADIRNKFNMPSHL---NIEELAEKTP 370
           V G R  D RN+ N+ +++    +  L E+ P
Sbjct: 160 VLGNRRRDKRNQLNLEANILKAALRALKEEKP 191

>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           ++E++    P+  +WFQLY+  D +  K +VQRAE  G+KALV+T+DT V G R  D RN
Sbjct: 111 SLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRN 170
Query: 421 KFNMPSHL 428
           + N+ +++
Sbjct: 171 QLNLEANI 178

>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144 From Janibacter Sp. Htcc2649), Unliganded Structure Length = 200

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 75/143 (52%), Gaps = 3/143 (2%)
Query: 35  GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRP 94
           G P+   V+MGVSGSGK+TI   +A   G++F + D  H   NI  M    PL DEDR P
Sbjct: 26  GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWP 85
Query: 95  WLNNINRIIHQLNVDNLTGVLVCSALXXXXXXXXXXXXXVV-FIYLKAEFGVILSRLQKR 153
           WL ++   +       ++ ++ CSAL              V F++L     VI  R+ KR
Sbjct: 86  WLRSLAEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKR 145
Query: 154 AEHFMPADLLESQFQTLE--EPD 174
             HFMPA LL+SQ  TLE  EPD
Sbjct: 146 EGHFMPASLLQSQLATLEALEPD 168

>pdb|3T61|A Chain A, Crystal Structure Of A Gluconokinase From Sinorhizobium Meliloti 1021 Length = 202

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 14/147 (9%)
Query: 56  ESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNIN-RIIHQLNVDNLTGV 114
           E++A   G  FI+GD LHP  NI K S   PL D+DR PWL  I  R+  +  V     V
Sbjct: 36  EAIAEACGYPFIEGDALHPPENIRKXSEGIPLTDDDRWPWLAAIGERLASREPV-----V 90
Query: 115 LVCSALXXXXXXXXXXXX--XVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEE 172
           + CSAL               + F++L     V+  R   R  HF P+ LL++Q +TLE+
Sbjct: 91  VSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERXHHRTGHFXPSSLLQTQLETLED 150
Query: 173 PDPLVEPDVRTVSVN--EPLEGIVSKS 197
           P      +VRTV+V+  +PL  IV ++
Sbjct: 151 P----RGEVRTVAVDVAQPLAEIVREA 173

>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase Length = 374

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 67/136 (49%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A K   + PR+ +D+      T+ LGH ++ P  ++P A   LAH   E G A AV E G
Sbjct: 57  AWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFG 116
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
            I              +E      +WFQ+Y+ +D +  + ++  A+  G  A++LT D+ 
Sbjct: 117 TIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADST 176
Query: 342 VFGTRYADIRNKFNMP 357
           V G R  D++NKF  P
Sbjct: 177 VSGNRDRDVKNKFVYP 192

>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase Length = 374

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 358 SHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYAD 417
           S    EE++E      +WFQ+Y+ +D +  + ++  A+  G  A++LT D+ V G R  D
Sbjct: 125 SGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRD 184
Query: 418 IRNKFNMP 425
           ++NKF  P
Sbjct: 185 VKNKFVYP 192

>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase Length = 374

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 67/136 (49%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A K   + PR+ +D+      T+ LGH ++ P  ++P A   LAH   E G A AV E G
Sbjct: 57  AWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFG 116
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
            I              +E      +WFQ+Y+ +D +  + ++  A+  G  A++LT D+ 
Sbjct: 117 TIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADST 176
Query: 342 VFGTRYADIRNKFNMP 357
           V G R  D++NKF  P
Sbjct: 177 VSGNRDRDVKNKFVYP 192

>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase Length = 374

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 358 SHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYAD 417
           S    EE++E      +WFQ+Y+ +D +  + ++  A+  G  A++LT D+ V G R  D
Sbjct: 125 SGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRD 184
Query: 418 IRNKFNMP 425
           ++NKF  P
Sbjct: 185 VKNKFVYP 192

>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase And A Substrate Analogue At 1.59 Angstrom Resolution Length = 368

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 67/136 (49%)
Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
           A K   + PR+ +D+      T+ LGH ++ P  ++P A   LAH   E G A AV E G
Sbjct: 51  AWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFG 110
Query: 282 GIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
            I              +E      +WFQ+Y+ +D +  + ++  A+  G  A++LT D+ 
Sbjct: 111 TIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADST 170
Query: 342 VFGTRYADIRNKFNMP 357
           V G R  D++NKF  P
Sbjct: 171 VSGNRDRDVKNKFVYP 186

>pdb|2NLI|A Chain A, Crystal Structure Of The Complex Between L-Lactate Oxidase And A Substrate Analogue At 1.59 Angstrom Resolution Length = 368

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 358 SHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYAD 417
           S    EE++E      +WFQ+Y+ +D +  + ++  A+  G  A++LT D+ V G R  D
Sbjct: 119 SGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRD 178
Query: 418 IRNKFNMP 425
           ++NKF  P
Sbjct: 179 VKNKFVYP 186

>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
           +P+++ D+ K  + TD LG  V +P  VS  A+ KL +  EGE     G    V +V  +
Sbjct: 167 KPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQM 226
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
                         A  + +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    
Sbjct: 227 ISTAASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 286
Query: 344 GTRYADIRNKFN 355
           G R  D++ KF+
Sbjct: 287 GQREKDMKLKFS 298

>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           EE+ E  P  +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    G R  D++ 
Sbjct: 236 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKL 295
Query: 421 KFN 423
           KF+
Sbjct: 296 KFS 298

>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 243 TDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYXXXXXXXXXXXXXAEKTP 302
           T  LG  + +PI ++P AMQK+AH EGE   A A    G I              A   P
Sbjct: 2   TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 61
Query: 303 QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNV 342
              ++FQLY+Y+DR +   LV+RAE+AG+KA+ LTV  +V
Sbjct: 62  GI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVWKDV 100

>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 361 NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNV 410
           ++EE+A   P   ++FQLY+Y+DR +   LV+RAE+AG+KA+ LTV  +V
Sbjct: 52  SVEEVASTGPGI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVWKDV 100

>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
           +P+++ D+ K  + TD LG  V +P  VS  A+ KL +  EGE     G    V +V  +
Sbjct: 167 KPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQM 226
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
                         A  + +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    
Sbjct: 227 ISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 286
Query: 344 GTRYADIRNKFN 355
           G R  D++ KF+
Sbjct: 287 GQREKDMKLKFS 298

>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           EE+ E  P  +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    G R  D++ 
Sbjct: 236 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKL 295
Query: 421 KFN 423
           KF+
Sbjct: 296 KFS 298

>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
           +P+++ D+ K  + TD LG  V +P  VS  A+ KL +  EGE     G    V +V  +
Sbjct: 167 KPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQM 226
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
                         A  + +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    
Sbjct: 227 ISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 286
Query: 344 GTRYADIRNKFN 355
           G R  D++ KF+
Sbjct: 287 GQREKDMKLKFS 298

>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           EE+ E  P  +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    G R  D++ 
Sbjct: 236 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKL 295
Query: 421 KFN 423
           KF+
Sbjct: 296 KFS 298

>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
           +P+++ D+ K  + TD LG  V +P  VS  A+ KL +  EGE     G    V +V  +
Sbjct: 167 KPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQM 226
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
                         A  + +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    
Sbjct: 227 ISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 286
Query: 344 GTRYADIRNKFN 355
           G R  D++ KF+
Sbjct: 287 GQREKDMKLKFS 298

>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           EE+ E  P  +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    G R  D++ 
Sbjct: 236 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKL 295
Query: 421 KFN 423
           KF+
Sbjct: 296 KFS 298

>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
           +P+++ D+ K  + TD LG  V +P  VS  A+ KL +  EGE     G    V +V  +
Sbjct: 162 KPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQM 221
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
                         A  + +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    
Sbjct: 222 ISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 281
Query: 344 GTRYADIRNKFN 355
           G R  D++ KF+
Sbjct: 282 GQREKDMKLKFS 293

>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           EE+ E  P  +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    G R  D++ 
Sbjct: 231 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKL 290
Query: 421 KFN 423
           KF+
Sbjct: 291 KFS 293

>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
           +P+++ D+ K  + TD LG  V +P  VS  A+ KL +  EGE     G    V +V  +
Sbjct: 68  KPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQM 127
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
                         A  + +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    
Sbjct: 128 ISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 187
Query: 344 GTRYADIRNKFN 355
           G R  D++ KF+
Sbjct: 188 GQREKDMKLKFS 199

>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           EE+ E  P  +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    G R  D++ 
Sbjct: 137 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKL 196
Query: 421 KFN 423
           KF+
Sbjct: 197 KFS 199

>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
           +P+++ D+ K  + TD LG  V +P  VS   + KL +  EGE     G    V +V  +
Sbjct: 167 KPKILVDVRKVDISTDMLGSHVDVPFYVSATGLCKLGNPLEGEKDVARGCGQGVTKVPQM 226
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
                         A  + +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    
Sbjct: 227 ISTAASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 286
Query: 344 GTRYADIRNKFN 355
           G R  D++ KF+
Sbjct: 287 GQREKDMKLKFS 298

>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           EE+ E  P  +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    G R  D++ 
Sbjct: 236 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKL 295
Query: 421 KFN 423
           KF+
Sbjct: 296 KFS 298

>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 229 RPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHE-EGEI----GNAAAVGEVGGI 283
           +P+++ D+ K  + TD LG  V +P  VS  A+ KL +  EGE     G    V +V  +
Sbjct: 66  KPKILVDVRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQM 125
Query: 284 YXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
                         A  + +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    
Sbjct: 126 ISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSL 185
Query: 344 GTRYADIRNKFN 355
           G +  D++ KF+
Sbjct: 186 GQKEKDMKLKFS 197

>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 363 EELAEKTP--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 420
           EE+ E  P  +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    G +  D++ 
Sbjct: 135 EEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQKEKDMKL 194
Query: 421 KFN 423
           KF+
Sbjct: 195 KFS 197

>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 216 DDFEQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAA 275
           D F+Q+     R +P+ + D+S+R+L  + LG    +P+ + P A+      +G++  A 
Sbjct: 42  DVFQQW-----RFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTALNGALWPKGDLALAR 96
Query: 276 AVGEVGGIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALV 335
           A  + G  +             A +      WFQLY+   REI + +V +A   GY  LV
Sbjct: 97  AATKAGIPFVLSTASNMSIEDLARQCDGDL-WFQLYVIH-REIAQGMVLKALHTGYTTLV 154
Query: 336 LTVDTNVFGTRYADIRNKFNMPSHLNIE 363
           LT D  V G R  D+ N+F +P  L ++
Sbjct: 155 LTTDVAVNGYRERDLHNRFKIPPFLTLK 182

>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 354 FNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGT 413
            +  S+++IE+LA +      WFQLY+   REI + +V +A   GY  LVLT D  V G 
Sbjct: 107 LSTASNMSIEDLARQCDGDL-WFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGY 164
Query: 414 RYADIRNKFNMPSHL 428
           R  D+ N+F +P  L
Sbjct: 165 RERDLHNRFKIPPFL 179

>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Query: 216 DDFEQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAA 275
           D F+Q+     R +P+ + D+S+R+L  + LG    +P+ + P  +      +G++  A 
Sbjct: 42  DVFQQW-----RFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALAR 96
Query: 276 AVGEVGGIYXXXXXXXXXXXXXAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALV 335
           A  + G  +             A +      WFQLY+   REI + +V +A   GY  LV
Sbjct: 97  AATKAGIPFVLSTASNMSIEDLARQCDGDL-WFQLYVIH-REIAQGMVLKALHTGYTTLV 154
Query: 336 LTVDTNVFGTRYADIRNKFNMPSHLNIE 363
           LT D  V G R  D+ N+F +P  L ++
Sbjct: 155 LTTDVAVNGYRERDLHNRFKIPPFLTLK 182

>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 354 FNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGT 413
            +  S+++IE+LA +      WFQLY+   REI + +V +A   GY  LVLT D  V G 
Sbjct: 107 LSTASNMSIEDLARQCDGDL-WFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGY 164
Query: 414 RYADIRNKFNMPSHL 428
           R  D+ N+F +P  L
Sbjct: 165 RERDLHNRFKIPPFL 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	433
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	8e-69
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	6e-30
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	3e-68
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	4e-30
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	2e-66
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	2e-30
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	4e-65
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	3e-29
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	1e-60
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	3e-26
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	5e-60
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	1e-25
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	1e-58
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	3e-58
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	1e-57
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	1e-56
2vli_A	183	Antibiotic resistance protein; transferase, tunica	2e-23
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	2e-19
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	1e-05
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	4e-17
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	4e-15
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	2e-11
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	5e-11
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	3e-10
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	4e-10
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	6e-08
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	1e-07
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	2e-07
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	2e-07
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	3e-07
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	3e-07
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	6e-07
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	6e-07
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	7e-07
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	1e-06
1via_A	175	Shikimate kinase; structural genomics, transferase	2e-06
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	4e-06
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	8e-05
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	2e-04
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	6e-04

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368

 Score =  221 bits (566), Expect = 8e-69
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 31/217 (14%)

Query: 200 MPPTRAPPNYSDFVCVDDFEQFALKVL----------------------------RIRPR 231
             P+       D V   D E+ A KV+                             + PR
Sbjct: 3   NAPSEIKY--IDVVNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRAWKHKLLYPR 60

Query: 232 VMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTIST 291
           + +D+      T+ LGH ++ P  ++P A   LAH   E G A AV E G I  +S  S 
Sbjct: 61  LAQDVEAPDTSTEILGHKIKAPFIMAPIAAHGLAHTTKEAGTARAVSEFGTIMSISAYSG 120

Query: 292 TSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIR 351
            + EE++E      +WFQ+Y+ +D +  + ++  A+  G  A++LT D+ V G R  D++
Sbjct: 121 ATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVK 180

Query: 352 NKFNMPSHL-NIEELAEKTPQTTKWFQLYIYRDREIT 387
           NKF  P  +  ++     T +      +Y    ++I+
Sbjct: 181 NKFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKIS 217

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368

 Score =  118 bits (298), Expect = 6e-30
 Identities = 22/68 (32%), Positives = 39/68 (57%)

Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNK 421
            EE++E      +WFQ+Y+ +D +  + ++  A+  G  A++LT D+ V G R  D++NK
Sbjct: 123 FEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNK 182

Query: 422 FNMPSHLK 429
           F  P  + 
Sbjct: 183 FVYPFGMP 190

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352

 Score =  219 bits (561), Expect = 3e-68
 Identities = 61/204 (29%), Positives = 94/204 (46%), Gaps = 28/204 (13%)

Query: 212 FVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLVT 243
            VC+ DF+  A K L                            R+RPR +RD+SK    T
Sbjct: 2   LVCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRT 61

Query: 244 DALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQ 303
              G  +  PI +SP A   +A  +GE   A A  E    Y++S+ ++ S+E++    P+
Sbjct: 62  TIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPE 121

Query: 304 TTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIE 363
             +WFQLY+  D +  K +VQRAE  G+KALV+T+DT V G R  D RN+ N+ +++   
Sbjct: 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKA 181

Query: 364 ELAEKTPQTTKWFQLYIYRDREIT 387
            L     +        ++      
Sbjct: 182 ALRALKEEKPTQSVPVLFPKASFC 205

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352

 Score =  118 bits (298), Expect = 4e-30
 Identities = 29/67 (43%), Positives = 45/67 (67%)

Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNK 421
           +E++    P+  +WFQLY+  D +  K +VQRAE  G+KALV+T+DT V G R  D RN+
Sbjct: 112 LEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQ 171

Query: 422 FNMPSHL 428
            N+ +++
Sbjct: 172 LNLEANI 178

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392

 Score =  216 bits (552), Expect = 2e-66
 Identities = 70/202 (34%), Positives = 107/202 (52%), Gaps = 28/202 (13%)

Query: 201 PPTRAPPNYSDFVCVDDFEQFALKVL----------------------------RIRPRV 232
                       +C++D+EQ A  VL                            ++ PR+
Sbjct: 16  ENLYFQSMLPRLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRM 75

Query: 233 MRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTT 292
           +R++++  L T  LG  V +PI V   AMQ++AH +GE+    A   +G   +LS+ +T+
Sbjct: 76  LRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATS 135

Query: 293 SIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRN 352
           SIEE+AE  P+  +W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT   G R  D+RN
Sbjct: 136 SIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRN 195

Query: 353 KFNMPSHLNIEELAEKTPQTTK 374
           +F +P  L ++     T   + 
Sbjct: 196 RFKLPPQLRMKNFETSTLSFSP 217

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392

 Score =  120 bits (303), Expect = 2e-30
 Identities = 38/68 (55%), Positives = 51/68 (75%)

Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNK 421
           IEE+AE  P+  +W QLYIY+DRE+TK LV++AEK GYKA+ +TVDT   G R  D+RN+
Sbjct: 137 IEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNR 196

Query: 422 FNMPSHLK 429
           F +P  L+
Sbjct: 197 FKLPPQLR 204

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370

 Score =  212 bits (541), Expect = 4e-65
 Identities = 72/211 (34%), Positives = 107/211 (50%), Gaps = 32/211 (15%)

Query: 211 DFVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLV 242
           +   V+++E  A + L                              RPR++ D++   + 
Sbjct: 3   EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 62

Query: 243 TDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTP 302
           T  LG  + +PI ++P AMQK+AH EGE   A A    G I  LS+ +T+S+EE+A   P
Sbjct: 63  TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 122

Query: 303 QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHL-- 360
              ++FQLY+Y+DR +   LV+RAE+AG+KA+ LTVDT   G R ADI+N+F +P  L  
Sbjct: 123 G-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTL 181

Query: 361 -NIEELAEKTPQTTKWFQLYIYRDREITKSL 390
            N E +            L  Y   +I +SL
Sbjct: 182 KNFEGIDLGKMDKANDSGLSSYVAGQIDRSL 212

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370

 Score =  116 bits (293), Expect = 3e-29
 Identities = 34/68 (50%), Positives = 48/68 (70%), Gaps = 1/68 (1%)

Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNK 421
           +EE+A   P   ++FQLY+Y+DR +   LV+RAE+AG+KA+ LTVDT   G R ADI+N+
Sbjct: 114 VEEVASTGPGI-RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNR 172

Query: 422 FNMPSHLK 429
           F +P  L 
Sbjct: 173 FVLPPFLT 180

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380

 Score =  200 bits (512), Expect = 1e-60
 Identities = 57/211 (27%), Positives = 90/211 (42%), Gaps = 33/211 (15%)

Query: 211 DFVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLV 242
           +   V+D+ + A K L                            R +P+ + D+S+R+L 
Sbjct: 4   NLFNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQ 63

Query: 243 TDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTP 302
            + LG    +P+ + P  +      +G++  A A  + G  ++LST S  SIE+LA +  
Sbjct: 64  AEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCD 123

Query: 303 QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHL-- 360
               WFQLY+   REI + +V +A   GY  LVLT D  V G R  D+ N+F +P  L  
Sbjct: 124 -GDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTL 181

Query: 361 -NIEELAEKTPQTTKWFQLYIYRDREITKSL 390
            N E +                  R++  S 
Sbjct: 182 KNFEGIDLGKMDKANLEMQAALMSRQMDASF 212

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380

 Score =  108 bits (272), Expect = 3e-26
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 362 IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNK 421
           IE+LA +      WFQLY+   REI + +V +A   GY  LVLT D  V G R  D+ N+
Sbjct: 115 IEDLARQCD-GDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNR 172

Query: 422 FNMPSHLK 429
           F +P  L 
Sbjct: 173 FKIPPFLT 180

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511

 Score =  202 bits (517), Expect = 5e-60
 Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 37/235 (15%)

Query: 159 PADLLE---SQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPTRAPPNYSDFVCV 215
             ++++   +  + L      + P++       P E     +         P   + + +
Sbjct: 67  APNVIDKYIAPEKKLGPLQGSMPPELVCPP-YAPGETKEDIARKEQLKSLLPPLDNIINL 125

Query: 216 DDFEQFALKVL----------------------------RIRPRVMRDLSKRTLVTDALG 247
            DFE  A + L                              +P+++ D+ K  + TD LG
Sbjct: 126 YDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLG 185

Query: 248 HPVQIPIGVSPAAMQKLAH---EEGEIGNAAAVGEVGGIYILSTISTTSIEELAE--KTP 302
             V +P  VS  A+ KL +    E ++      G      ++ST+++ S EE+ E   + 
Sbjct: 186 SHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSD 245

Query: 303 QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMP 357
           +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    G R  D++ KF+  
Sbjct: 246 KQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNT 300

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511

 Score =  108 bits (271), Expect = 1e-25
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 362 IEELAE--KTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIR 419
            EE+ E   + +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    G R  D++
Sbjct: 235 PEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMK 294

Query: 420 NKFNMP 425
            KF+  
Sbjct: 295 LKFSNT 300

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Length = 175

 Score =  189 bits (480), Expect = 1e-58
 Identities = 77/171 (45%), Positives = 112/171 (65%), Gaps = 8/171 (4%)

Query: 25  MTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAK 84
           M+TT           ++V+MGVSGSGKS +   +A +L   F+DGD LHP+ NI+KM++ 
Sbjct: 1   MSTT------NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG 54

Query: 85  QPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-RVVFIYLKAEF 143
           +PLND+DR+PWL  +N     +   N   ++VCSAL+++YRD++R  N  + FIYLK +F
Sbjct: 55  EPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDF 114

Query: 144 GVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIV 194
            VI SRL+ R  HF    +L +QF+TL+EP    E DV  V +++PLEG+V
Sbjct: 115 DVIESRLKARKGHFFKTQMLVTQFETLQEPGAD-ETDVLVVDIDQPLEGVV 164

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score =  188 bits (479), Expect = 3e-58
 Identities = 70/176 (39%), Positives = 96/176 (54%), Gaps = 12/176 (6%)

Query: 25  MTTTLSPSGEGSPS----TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK 80
           M  ++    E +         V+MGVSGSGKS++GE++A   G  FI+GD LHP  NI K
Sbjct: 1   MVMSIEYKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRK 60

Query: 81  MSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIR--NNNRVVFIY 138
           MS   PL D+DR PWL  I   +          V+ CSAL+R+YRD +R      + F++
Sbjct: 61  MSEGIPLTDDDRWPWLAAIGERLAS----REPVVVSCSALKRSYRDKLRESAPGGLAFVF 116

Query: 139 LKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIV 194
           L     V+  R+  R  HFMP+ LL++Q +TLE+P    E     V V +PL  IV
Sbjct: 117 LHGSESVLAERMHHRTGHFMPSSLLQTQLETLEDPRG--EVRTVAVDVAQPLAEIV 170

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score =  187 bits (475), Expect = 1e-57
 Identities = 62/161 (38%), Positives = 90/161 (55%), Gaps = 3/161 (1%)

Query: 35  GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRP 94
           G P+   V+MGVSGSGK+TI   +A   G++F + D  H   NI  M    PL DEDR P
Sbjct: 26  GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWP 85

Query: 95  WLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-RVVFIYLKAEFGVILSRLQKR 153
           WL ++   +       ++ ++ CSAL+R YRD++R     V F++L     VI  R+ KR
Sbjct: 86  WLRSLAEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKR 145

Query: 154 AEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIV 194
             HFMPA LL+SQ  TLE  +P  +     + + +P E ++
Sbjct: 146 EGHFMPASLLQSQLATLEALEP--DESGIVLDLRQPPEQLI 184

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173

 Score =  183 bits (467), Expect = 1e-56
 Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 14/165 (8%)

Query: 39  TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHP-QSNIDKMSA-KQPLNDEDRRPWL 96
           T+ ++ G     KST+   L+  L    I G      +S  +K+      L DED     
Sbjct: 2   TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGNEKLFEHFNKLADEDNVIID 61

Query: 97  NNINRIIHQLNVDNLTGVLVCSALRRNYRDIIR--NNNRVVFIYLKAEFGVILSRLQKRA 154
               R ++   V         S L       I      +   +YL A+  VI  RL+ R 
Sbjct: 62  ----RFVYSNLVYA-KKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG 116

Query: 155 EHFMPADLLESQFQTLEEPDPLVEPDVRTVSV---NEPLEGIVSK 196
           + ++    ++S  +   E        + T S        + I   
Sbjct: 117 DEYIEGKDIDSILELYREVMS--NAGLHTYSWDTGQWSSDEIAKD 159

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Length = 183

 Score = 95.8 bits (238), Expect = 2e-23
 Identities = 29/182 (15%), Positives = 64/182 (35%), Gaps = 13/182 (7%)

Query: 38  STVFVIMGVSGSGKSTIGESLATRLGVKFI-DGDHLHPQSNIDKMSAKQPLNDEDRRPWL 96
           S +  I G  G GK+    +L  RL   F+ + + +     + K++     + ++   W+
Sbjct: 5   SPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMG--QALRKLTPGFSGDPQEHPMWI 62

Query: 97  NNINRIIHQLNVDNLTGVLV--CSALRRNYRDIIRNNNR-----VVFIYLKAEFGVILSR 149
             +   +         G L+   S         + +  +     V    L A   V+L R
Sbjct: 63  PLMLDALQYA-SREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLER 121

Query: 150 LQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSK--SAIMPPTRAPP 207
           L++  +  +    +E +   L         D   +   +  E I ++    + PP +   
Sbjct: 122 LRRDGQPQVNVGTVEDRLNELRGEQFQTHIDTAGLGTQQVAEQIAAQVGLTLAPPPQGAL 181

Query: 208 NY 209
           ++
Sbjct: 182 HW 183

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365

 Score = 87.9 bits (218), Expect = 2e-19
 Identities = 16/138 (11%), Positives = 37/138 (26%), Gaps = 23/138 (16%)

Query: 227 RIRPRVM--RDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIY 284
            +    +   DL++  L T   G     P  ++         +E     A      G ++
Sbjct: 60  ELIHHSLPDYDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLF 119

Query: 285 ILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFG 344
           +  +                         ++ + T   V+++      A  + +D     
Sbjct: 120 VTGS--------------------YSTALKNPDDTSYQVKKSRPHLLLATNIGLDKPYQA 159

Query: 345 TRYA-DIRNKFNMPSHLN 361
              A        +  H+N
Sbjct: 160 GLQAVRDLQPLFLQVHIN 177

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 377 QLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYA-DIRNKFNMPSHLKEDQD 433
                ++ + T   V+++      A  + +D        A        +  H+   Q+
Sbjct: 124 YSTALKNPDDTSYQVKKSRPHLLLATNIGLDKPYQAGLQAVRDLQPLFLQVHINLMQE 181

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 78.4 bits (193), Expect = 4e-17
 Identities = 28/181 (15%), Positives = 61/181 (33%), Gaps = 26/181 (14%)

Query: 36  SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPW 95
               + ++ G   +GK+T+ ++LAT L +  +  D        + M      +D +    
Sbjct: 3   QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFK-----EVMFDGLGWSDREWSRR 57

Query: 96  LN-----NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRN-----NNRVVFIYLKAEFGV 145
           +       +      +     + ++  +       + ++N         + I   A   V
Sbjct: 58  VGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDV 117

Query: 146 ILSRLQKRAEHF----------MPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVS 195
           ++ R+  R               PADL   + +    P PL  P + TV    P +  ++
Sbjct: 118 LVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGP-LLTVDTTFPEQIDMN 176

Query: 196 K 196
            
Sbjct: 177 A 177

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 72.8 bits (178), Expect = 4e-15
 Identities = 31/187 (16%), Positives = 62/187 (33%), Gaps = 11/187 (5%)

Query: 33  GEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKF--IDGDHLHPQSNIDKMSAKQPLNDE 90
            +     + ++ G  GSGKSTI E+LA   GV       D L       ++    P + +
Sbjct: 4   TDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ 63

Query: 91  DRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSR 149
             R  +     +           V++   +R ++        R + +I L+      + R
Sbjct: 64  QNRMIMQIAADVA-GRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIER 122

Query: 150 LQKRAEHFM----PADLLESQFQTLEEPDPLV-EPDVRTV--SVNEPLEGIVSKSAIMPP 202
              R    +        L SQF  L   +  V     +    ++   +  + S    +  
Sbjct: 123 CLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINALQSGRFRIDA 182

Query: 203 TRAPPNY 209
           +    ++
Sbjct: 183 SLEHHHH 189

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 15/154 (9%)

Query: 40  VFVIMGVSGSGKSTIGESLATRLGVK-FIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN 98
           +++I G +G GKST  + LA +L    +I+GD ++       +        E        
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIIN-----HMVVGGYRPPWESDELLALT 58

Query: 99  INRIIHQLNVDNLTG--VLVCSALR----RNYRDIIR---NNNRVVFIYLKAEFGVILSR 149
              I        L    V++               ++   ++  + FI L      +L R
Sbjct: 59  WKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRR 118

Query: 150 LQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRT 183
              R +     +      +  E           T
Sbjct: 119 DALRKKDEQMGERCLELVEEFESKGIDERYFYNT 152

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 60.4 bits (146), Expect = 5e-11
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 11/121 (9%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI-DKMSAKQPLNDEDRRPWLNNIN 100
           ++ G  G GK+T+G+ LA++ G+K+I+   L  +  + D    +      D    ++ ++
Sbjct: 15  LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELD 74

Query: 101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPA 160
             + +  V  +     C      +  I+          L+ +  V+  RL+ R  +    
Sbjct: 75  NQMREGGV--IVDYHGCDFFPERWFHIV--------FVLRTDTNVLYERLETRGYNEKKL 124

Query: 161 D 161
            
Sbjct: 125 T 125

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 61.8 bits (150), Expect = 5e-11
 Identities = 35/181 (19%), Positives = 75/181 (41%), Gaps = 16/181 (8%)

Query: 39  TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN 98
            + ++ G+ G GKST  ++LA  L    ID   L      D +    P+  E    ++  
Sbjct: 5   MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL----GSDLIRESFPVWKEKYEEFIKK 60

Query: 99  INRIIHQLNVDNLTGVL----VCSALRRNYRDIIRNNN-RVVFIYLKAEFGVILSRLQKR 153
               +    + N   ++      +++RR+  +I +  N     IYLKA   V++ R  +R
Sbjct: 61  STYRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIER 120

Query: 154 AEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNE----PLEGIVSKSAIMPPTRAPPNY 209
            E  +P ++++  ++  +EP    + D   + ++         I     ++  ++  P +
Sbjct: 121 GEK-IPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIA--KKLIEKSKEIPKF 177

Query: 210 S 210
            
Sbjct: 178 Y 178

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 6e-11
 Identities = 72/465 (15%), Positives = 134/465 (28%), Gaps = 127/465 (27%)

Query: 36  SPSTVFVIMGVSGSGKST-IGESLATR--------------LGVKFIDGDHLHPQSN--- 77
            P+   +I GV GSGK+    +   +               L         L        
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 78  -IDKM-------SAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL--VCSALRRNYRDI 127
            ID         S+   L     +  L  +  +  +   + L  VL  V +A   N  ++
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLL-VLLNVQNAKAWNAFNL 264

Query: 128 -----IRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLE--SQFQTLEEPD-PLVEP 179
                +    + V  +L A     +S L   +    P ++     ++      D P    
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKYLDCRPQDLP---R 320

Query: 180 DVRTVSVNEPLE-GIVSKSAIMPPTRAPPNYSDFVCVDDFEQF---ALKVLRIRPRVMRD 235
           +V T +   P    I+++S          +    V  D        +L VL   P   R 
Sbjct: 321 EVLTTN---PRRLSIIAESIRDGLAT--WDNWKHVNCDKLTTIIESSLNVLE--PAEYRK 373

Query: 236 LSKRTLV--TDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTS 293
           +  R  V           IP  +       +   +  +             +++ +   S
Sbjct: 374 MFDRLSVFPPS-----AHIPTILLSLIWFDVIKSDVMV-------------VVNKLHKYS 415

Query: 294 IEELAEKTPQTTKWFQLY-IYRD--------REITKSLVQRAEKAGYKALVLTVDTNVFG 344
              L EK P+ +    +  IY +          + +S+V       Y  +  T D++   
Sbjct: 416 ---LVEKQPKEST-ISIPSIYLELKVKLENEYALHRSIVDH-----YN-IPKTFDSDDLI 465

Query: 345 TRYADIRNKF--NMPSHLNIEELAEKTPQTTKWF-------------------------- 376
             Y D    F  ++  HL   E  E+       F                          
Sbjct: 466 PPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523

Query: 377 --QLYIYRDREITKSLVQRAEKAG-YKALVLTVDTNVFGTRYADI 418
             QL  Y+   I  +  +           +  ++ N+  ++Y D+
Sbjct: 524 LQQLKFYKPY-ICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 57/406 (14%), Positives = 110/406 (27%), Gaps = 126/406 (31%)

Query: 65  KFIDGDHLHPQSNID------KMSAKQPLNDEDR----RPWLNNINRIIHQLNV------ 108
           KF++      + N        K   +QP          R  L N N++  + NV      
Sbjct: 81  KFVEEVL---RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 109 -------------DNLT--G-------VLVCSALRRNYRDIIRNNNRVVFIYLKAEF--G 144
                         N+   G        +       +Y+   + + ++ ++ LK      
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 145 VILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPTR 204
            +L  LQK      P              D      +R  S+   L  ++          
Sbjct: 197 TVLEMLQKLLYQIDP--------NWTSRSDHSSNIKLRIHSIQAELRRLLKS-------- 240

Query: 205 APPNYSDFVCVDDFEQFALKVLR-IR-PRVMR--DLSKRTLVT-------DALGHPVQIP 253
               Y +           L VL  ++  +     +LS + L+T       D L       
Sbjct: 241 --KPYEN----------CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 254 IGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYI- 312
           I +   +M  L  +E +              +L        ++L     +        + 
Sbjct: 289 ISLDHHSM-TLTPDEVK-------------SLLLKYLDCRPQDLP---REVLTTNPRRLS 331

Query: 313 -----YRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNM----PSHLNIE 363
                 RD   T       +      L   +++++     A+ R  F+     P   +I 
Sbjct: 332 IIAESIRDGLAT---WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI- 387

Query: 364 ELAEKTPQTTK--WFQLYIYRDREIT-----KSLVQRAEKAGYKAL 402
                        WF +       +       SLV++  K    ++
Sbjct: 388 -----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 58.3 bits (141), Expect = 3e-10
 Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 11/154 (7%)

Query: 38  STVFVIMGVSGSGKST-IGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWL 96
             + + +G  GSGKST   E +A   G   I+ D         +   +     +      
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVT 61

Query: 97  NNINRIIHQLNVDNLTGVLV-------CSALRRNYRDIIRNNN-RVVFIYLKAEFGVILS 148
                    +     +   V           R  +    +    +V        +  ++ 
Sbjct: 62  GMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVK 121

Query: 149 RLQKRAEHFMPADLLESQFQTLEEP--DPLVEPD 180
           R  KR    +P D+L S ++++ E    P+    
Sbjct: 122 RNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGT 155

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 21/190 (11%), Positives = 49/190 (25%), Gaps = 20/190 (10%)

Query: 226 LRIRPRVM--RDLSKRTLVTDALGHPVQIPIGVSP-AAMQKLAHEEGEIGNAAAVGEVGG 282
           +      +    L +  + T         PI ++           E     A A  + G 
Sbjct: 28  ITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGI 87

Query: 283 IYILSTISTTSIEELAEKT--------PQTTKWFQLYIYRDREITKSLVQRAEKAGYKAL 334
              + +  +   +     +        P    +  L         K   +  E  G  AL
Sbjct: 88  PLAVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAK---EAVEMIGANAL 144

Query: 335 VLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRA 394
            + ++           R+         IE++  +        ++     +        + 
Sbjct: 145 QIHLNVIQEIVMPEGDRSFSGALKR--IEQICSRVSVPVIVKEVGFGMSKAS----AGKL 198

Query: 395 EKAGYKALVL 404
            +AG  A+ +
Sbjct: 199 YEAGAAAVDI 208

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Length = 199

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 30/152 (19%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------ED--RR 93
            + G  G+GK+T+G++ A +L V FID D       I++    + + +      E   R 
Sbjct: 29  FLTGYMGAGKTTLGKAFARKLNVPFIDLDWY-----IEER-FHKTVGELFTERGEAGFRE 82

Query: 94  PWLNNINRIIHQLNVDNLTGVLVC---SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL 150
              N ++ +    NV     V+     +    +  + +    +   ++L     V+  RL
Sbjct: 83  LERNMLHEVAEFENV-----VISTGGGAPCFYDNMEFMNRTGKT--VFLNVHPDVLFRRL 135

Query: 151 QKRAE------HFMPADLLESQFQTLEEPDPL 176
           +   +           +L++   Q LE+  P 
Sbjct: 136 RIAKQQRPILQGKEDDELMDFIIQALEKRAPF 167

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Length = 185

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 24/123 (19%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------ED--RR 93
            ++G+ G+GK+++G  LA        D D       I+K      +        E   RR
Sbjct: 9   YLIGLMGAGKTSVGSQLAKLTKRILYDSDKE-----IEKR-TGADIAWIFEMEGEAGFRR 62

Query: 94  PWLNNINRIIHQLNVDNLTGVLVC---SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL 150
                I  +    N+     +L       L    R  I     V  IYL A     L R+
Sbjct: 63  REREMIEALCKLDNI-----ILATGGGVVLDEKNRQQISETGVV--IYLTASIDTQLKRI 115

Query: 151 QKR 153
            ++
Sbjct: 116 GQK 118

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Length = 168

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 24/123 (19%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------ED--RR 93
            ++G   SGKST+G  L+  L + F D D       + K      +        E   R+
Sbjct: 4   YLIGFMCSGKSTVGSLLSRSLNIPFYDVDEE-----VQKR-EGLSIPQIFEKKGEAYFRK 57

Query: 94  PWLNNINRIIHQLNVDNLTGVLVC---SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL 150
                +  +  + NV     V+             + +++      +++   F V L R 
Sbjct: 58  LEFEVLKDLSEKENV-----VISTGGGLGANEEALNFMKSRGTT--VFIDIPFEVFLERC 110

Query: 151 QKR 153
           +  
Sbjct: 111 KDS 113

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Length = 173

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 24/123 (19%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------ED--RR 93
            ++G  G+GKSTIG  LA +L ++F D D       I+K      +        E+  R 
Sbjct: 8   FLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE-----IEKR-TGADVGWVFDLEGEEGFRD 61

Query: 94  PWLNNINRIIHQLNVDNLTGVLVC---SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL 150
                IN +  +  +     VL     S   R  R+ +     VV  YL+      L+R 
Sbjct: 62  REEKVINELTEKQGI-----VLATGGGSVKSRETRNRLSARGVVV--YLETTIEKQLART 114

Query: 151 QKR 153
           Q+ 
Sbjct: 115 QRD 117

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Length = 173

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 36/135 (26%)

Query: 37  PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------- 89
              +F++ G  G G +T+G  LA  LG +F+D D       +   ++   + D       
Sbjct: 2   TEPIFMV-GARGCGMTTVGRELARALGYEFVDTDIF-----MQH-TSGMTVADVVAAEGW 54

Query: 90  ------EDRRPWLNNINRIIHQLNVDNLTGVLVC---SALRRNYRDIIRNNNRVVFIYLK 140
                 E         +  +  +   N   V+       L    R  +R +  VV  YL 
Sbjct: 55  PGFRRRE---------SEALQAVATPN--RVVATGGGMVLLEQNRQFMRAHGTVV--YLF 101

Query: 141 AEFGVILSRLQKRAE 155
           A    +  RLQ   +
Sbjct: 102 APAEELALRLQASLQ 116

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Length = 168

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 27/123 (21%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------EDR-RP 94
           V++G  GSGKS++ + L   L ++ +D D +     I +      + +      ED  R 
Sbjct: 11  VLIGFMGSGKSSLAQELGLALKLEVLDTDMI-----ISER-VGLSVREIFEELGEDNFR- 63

Query: 95  WLNNI-NRIIHQLNVDNLTGVLVC---SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL 150
                   +I +L       V+       +  N    ++        YLK +F  ++ RL
Sbjct: 64  ---MFEKNLIDELKTLKTPHVISTGGGIVMHEN----LKGLGTT--FYLKMDFETLIKRL 114

Query: 151 QKR 153
            ++
Sbjct: 115 NQK 117

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Length = 184

 Score = 48.4 bits (116), Expect = 6e-07
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 42 VIMGVSGSGKSTIGESLATRLGVKFIDGDHL 72
          V++G+ GSGKSTIG  LA  LGV  +D D  
Sbjct: 6  VLVGLPGSGKSTIGRRLAKALGVGLLDTDVA 36

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 49.7 bits (118), Expect = 6e-07
 Identities = 25/154 (16%), Positives = 48/154 (31%), Gaps = 25/154 (16%)

Query: 39  TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN- 97
            + + +G  GSGKST     A     K     ++    N D        ++E        
Sbjct: 3   KIILTIGCPGSGKST----WAREFIAKNPGFYNI----NRDDYRQSIMAHEERDEYKYTK 54

Query: 98  NINRIIHQLNVDNLTGVL---------------VCSALRRNYRDIIRNNN-RVVFIYLKA 141
               I+  +  D    +L               +    R  +    +    +V       
Sbjct: 55  KKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV 114

Query: 142 EFGVILSRLQKRAEHFMPADLLESQFQTLEEPDP 175
            +  ++ R  KR    +P D+L S ++++ E   
Sbjct: 115 PWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLG 148

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184

 Score = 48.6 bits (115), Expect = 7e-07
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 14/117 (11%)

Query: 42  VIMGVSGSGKSTIGESLATRL-GVKFIDGDHL----HPQSNIDKMSAKQPLNDEDRRPWL 96
           +I G  G+GK+++ E +A  L G + ++   L    H  +  D       + ++D    L
Sbjct: 14  LITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLL 73

Query: 97  NNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR 153
           + +  I+           +V      +  ++       + + L     V+  RL KR
Sbjct: 74  DFMEPIMVSRG-----NHVVDY----HSSELFPERWFHMVVVLHTSTEVLFERLTKR 121

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Length = 250

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 21/122 (17%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------EDR-RP 94
            ++G+ GSGK+T+G+ +A  LG  F D D L     I++      + +      E   R 
Sbjct: 52  YLVGMMGSGKTTVGKIMARSLGYTFFDCDTL-----IEQAMKGTSVAEIFEHFGESVFR- 105

Query: 95  WLNNINRIIHQLNVDNLTGVLVC---SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQ 151
                   + +L++     V+     + +R      +      + I+L      +  R+ 
Sbjct: 106 --EKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKG---ISIWLDVPLEALAHRIA 160

Query: 152 KR 153
             
Sbjct: 161 AV 162

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Length = 175

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 36/126 (28%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND------EDR-RP 94
           V +G  GSGKST+  +LA  L + F+D D L     I++    Q +++      E+  R 
Sbjct: 8   VFIGFMGSGKSTLARALAKDLDLVFLDSDFL-----IEQK-FNQKVSEIFEQKRENFFR- 60

Query: 95  WLNNI-NRIIHQL-NVDNL---TG---VLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVI 146
                  ++     + +     TG   V             +        IYLKA+F  +
Sbjct: 61  ---EQEQKMADFFSSCEKACIATGGGFVN---------VSNLEKAGFC--IYLKADFEYL 106

Query: 147 LSRLQK 152
             RL K
Sbjct: 107 KKRLDK 112

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 19/212 (8%), Positives = 53/212 (25%), Gaps = 34/212 (16%)

Query: 226 LRIRPRVM--RDLSKRTLVTDALGHPVQIPIGVSP-AAMQKLAHEEGEIGN---AAAVGE 279
           + +  +       S+    T      + +P+ V+           E    N   A    +
Sbjct: 32  VILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTGG----RNELGRINKIIAEVAEK 87

Query: 280 VGGIYILSTISTTSIEELAEKTPQTTK--WFQLYIYRDREITKSLVQRAEKAGYKALVLT 337
            G    + +      +  A ++    +     + I  +  +     Q  +  G K     
Sbjct: 88  FGIPMGVGSQRVAIEKAEARESFAIVRKVAPTIPIIANLGM----PQLVKGYGLKEFQDA 143

Query: 338 VDTNVFGTRYADIRNK-----------FNMPSHLNIEELAEKTPQTTKWFQLYIYRDREI 386
           +           +              + + +   + +++++        +       E 
Sbjct: 144 IQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESGNGISMET 203

Query: 387 TKSLVQRAEKAGYKALVLTVDTNVFGTRYADI 418
                +     G K       +   GT +  I
Sbjct: 204 ----AKLLYSYGIKNFDT---SGQGGTNWIAI 228

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 42.4 bits (99), Expect = 8e-05
 Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 17/154 (11%)

Query: 37  PSTVFVIMGVSGSGKSTIGESLATRLGVKFI-----DGDHLHPQSNIDKMSAKQPLND-- 89
            + + ++ G S +GKS I   L + L   ++           P          +   D  
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61

Query: 90  EDRRPWLNNINRIIHQLNVDNL--------TGVLVCSALRRNYRDIIRNNNRVVFIYLKA 141
               P    +     +  V             V +  A  +        +  V+++ ++ 
Sbjct: 62  VSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRC 121

Query: 142 EFGVILSRLQKRAEHFMPADLLESQFQTLEEPDP 175
           +  V   R   R +    A +   Q   + E   
Sbjct: 122 DGAVAEGRETARGDR--VAGMAAKQAYVVHEGVE 153

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} Length = 223

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 2/112 (1%)

Query: 39  TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN 98
            +  I    GSG   +G+ LA  LG+ F D D L   S    +  +     +++    NN
Sbjct: 15  LIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFRLADEKAG--NN 72

Query: 99  INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL 150
           +   +      +L      +    +  ++ +  + V+    ++E  + + R 
Sbjct: 73  LLYRLGGGRKIDLHSKPSPNDKLTSPENLFKFQSEVMRELAESEPCIFVGRA 124

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 26/177 (14%), Positives = 56/177 (31%), Gaps = 16/177 (9%)

Query: 226 LRIRPRVM--RDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGI 283
            R+R + +    LS+  L T  LG  ++ P  +      +   E   +  A A   +G  
Sbjct: 31  FRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALG-- 88

Query: 284 YILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF 343
            +   + +  I     + P+  + F++     R++    +  A     +      D    
Sbjct: 89  -VGMMLGSGRI---LLERPEALRSFRV-----RKVAPKALLIANLGLAQLRRYGRDD--- 136

Query: 344 GTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYK 400
             R  ++     +  H+N  + A +   T     +    +       V   E     
Sbjct: 137 LLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGL 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	433
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	100.0
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	99.98
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	99.97
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	99.97
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	99.97
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	99.97
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.85
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.84
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.81
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	99.8
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.74
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.69
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.67
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.67
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.62
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.6
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.59
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.59
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.58
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.58
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.57
1via_A	175	Shikimate kinase; structural genomics, transferase	99.57
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.56
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.55
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.54
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.54
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.53
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.51
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.5
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.5
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	99.5
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.49
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.48
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.46
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.45
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.45
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.45
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	99.45
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.45
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.44
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.43
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	99.43
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.43
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	99.42
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.41
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.4
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.39
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.39
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.38
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.38
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.37
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.37
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.36
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	99.36
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	99.36
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.35
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.35
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	99.35
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.34
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.34
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.34
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.33
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.33
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.33
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.33
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.33
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.33
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.32
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.31
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	99.31
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.31
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	99.31
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.31
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.31
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	99.31
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.3
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	99.29
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.29
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	99.28
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.28
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.27
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.27
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	99.27
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.26
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.25
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	99.24
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.24
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	99.24
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	99.23
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.23
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	99.23
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.22
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.2
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.19
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.19
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	99.19
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.16
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.16
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.16
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.14
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	99.09
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.08
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.08
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.06
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.06
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.05
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.03
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.0
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.98
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.98
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.95
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	98.94
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.91
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	98.91
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	98.9
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.89
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.89
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.87
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.82
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	98.81
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.78
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.75
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	98.75
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.74
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.74
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.73
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.72
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.72
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.71
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	98.71
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.7
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.7
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.7
1g6h_A	257	High-affinity branched-chain amino acid transport	98.7
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.69
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.69
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.69
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.68
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	98.68
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.68
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.68
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.67
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	98.67
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.65
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.64
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.64
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	98.61
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.61
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.58
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.57
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.56
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.56
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.56
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.56
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.55
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	98.55
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.54
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.54
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.54
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.52
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.5
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.49
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.48
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.44
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.43
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.42
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.41
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	98.4
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.4
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.39
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.37
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.35
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.33
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.33
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.33
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.31
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.28
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	98.28
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.26
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.24
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.22
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.16
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.15
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.15
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.08
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.07
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.04
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.02
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.0
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.99
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.98
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.98
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.97
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.96
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.95
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.95
2og2_A	359	Putative signal recognition particle receptor; nuc	97.95
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.89
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.88
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.82
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.82
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.81
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.78
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.76
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.75
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.73
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.7
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.68
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.67
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.61
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.61
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.6
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.6
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.6
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.54
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.53
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.53
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.52
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.49
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.46
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.46
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.46
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	97.44
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.4
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.4
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.39
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.37
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.36
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.35
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	97.34
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.33
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.3
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.28
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.25
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.23
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.22
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.21
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.21
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.19
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.16
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.15
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.15
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.15
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.15
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.12
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.12
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.12
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.12
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.09
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.09
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.07
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.05
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	97.03
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.91
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.89
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.87
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.87
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.87
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.87
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.86
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.85
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.84
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.84
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.83
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.81
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.8
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.79
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.78
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	96.78
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.77
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	96.77
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	96.75
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.73
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.7
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.67
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.67
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	96.67
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.67
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.66
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	96.64
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.64
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.64
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.64
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.64
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.63
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.63
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.63
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.63
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	96.62
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.6
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.6
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.57
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.56
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.56
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.56
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.56
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.55
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.54
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.52
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.52
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.5
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.48
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.48
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.43
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.42
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.42
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.4
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.39
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.33
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.33
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.32
3bos_A	242	Putative DNA replication factor; P-loop containing	96.31
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.3
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.3
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	96.28
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.26
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.25
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.25
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.23
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.22
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.2
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.18
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.18
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.15
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.13
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.13
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.13
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.08
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	96.07
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.07
3ice_A	422	Transcription termination factor RHO; transcriptio	96.07
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.06
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.98
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.97
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.95
3co5_A	143	Putative two-component system transcriptional RES	95.93
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.92
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.91
3pvs_A	447	Replication-associated recombination protein A; ma	95.9
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.88
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.84
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.83
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.81
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.8
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	95.79
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.78
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.77
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	95.76
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.76
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.74
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.74
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	95.73
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.71
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.71
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	95.7
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.69
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	95.65
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.64
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.63
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.63
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	95.63
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.62
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.61
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.6
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.57
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	95.56
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.56
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.55
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	95.52
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.51
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	95.5
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	95.5
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.49
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	95.49
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.48
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.44
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.44
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.43
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.42
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	95.4
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.37
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	95.34
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.33
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	95.32
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.27
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.21
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.2
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.2
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.19
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	95.18
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.17
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.16
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	95.15
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.15
1e69_A	322	Chromosome segregation SMC protein; structural mai	95.12
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.11
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.1
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	95.08
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.06
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.04
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	95.02
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.01
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.0
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	94.99
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	94.98
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	94.98
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	94.97
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	94.97
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	94.94
2qgz_A	308	Helicase loader, putative primosome component; str	94.93
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.9
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	94.88
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	94.87
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	94.84
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.82
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	94.82
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	94.81
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.8
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.8
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.8
2xxa_A	433	Signal recognition particle protein; protein trans	94.73
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	94.71
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	94.64
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.63
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	94.62
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	94.61
2z43_A	324	DNA repair and recombination protein RADA; archaea	94.59
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	94.58
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	94.58
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.57
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	94.56
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.54
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	94.53
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	94.51
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	94.49
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.44
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.42
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.41
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	94.4
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	94.4
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.39
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.36
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.31
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	94.3
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	94.27
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	94.26
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.24
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.22
2chq_A	319	Replication factor C small subunit; DNA-binding pr	94.21
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	94.17
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	94.17
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	94.17
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	94.16
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.15
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	94.14
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	94.14
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.14
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.13
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.11
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	94.1
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	94.09
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	94.09
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	94.06
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.05
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.04
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.04
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	94.03
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	94.02
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.01
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	93.98
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	93.96
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	93.96
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	93.96
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	93.96
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	93.95
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	93.91
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	93.91
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	93.91
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	93.9
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	93.89
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	93.87
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	93.86
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	93.84
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	93.83
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	93.83
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	93.82
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	93.76
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	93.76
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	93.75
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	93.73
3end_A	307	Light-independent protochlorophyllide reductase ir	93.7
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.69
1xp8_A	366	RECA protein, recombinase A; recombination, radior	93.67
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	93.67
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	93.66
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	93.66
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	93.65
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	93.63
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	93.62
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	93.62

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=100.00  E-value=9.1e-44  Score=344.65  Aligned_cols=217  Identities=30%  Similarity=0.446  Sum_probs=187.4

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778        188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK  263 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~  263 (433)
                      .+++|+...+++++++ ..+.|.+.+++++.    |++||++|+|+||+|+|++++||+|++||+++++||++||+|+++
T Consensus         3 ~~~~d~~~~A~~~lp~-~~~~Y~~~ga~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP~g~~~   81 (352)
T 3sgz_A            3 VCLADFKAHAQKQLSK-TSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS   81 (352)
T ss_dssp             CSHHHHHHHHHHTSCH-HHHHHHHCCCTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             CCHHHHHHHHHHHCCH-HHHHHHhcCCcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceechHHHHH
Confidence            4688999999999987 56888888887665    589999999999999999999999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778        264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  343 (433)
Q Consensus       264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~  343 (433)
                      |+||+||.++||||+++|++|++|+.+++++|||+++.++++.|||+|+++|++++.++++||+++||++|++|||+|++
T Consensus        82 l~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~  161 (352)
T 3sgz_A           82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL  161 (352)
T ss_dssp             GTCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSC
T ss_pred             hcCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence            99999999999999999999999999999999999998878899999999999999999999999999999999999999


Q ss_pred             CccccccccccCCCccchHHHHHh------------------hCCCcchhh----hhhccCCHHHHHHHHHHHHHcCCcE
Q psy16778        344 GTRYADIRNKFNMPSHLNIEELAE------------------KTPQTTKWF----QLYIYRDREITKSLVQRAEKAGYKA  401 (433)
Q Consensus       344 G~r~~~~~~~~~~~~~~s~e~i~~------------------~~~~~~~w~----Qly~~~~~~~~~~~~~ra~~~G~~a  401 (433)
                      |+|++|.|++|..|+..++..+.+                  .+++...|.    .+++..+...+.+++++|+++|+++
T Consensus       162 g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~GaD~  241 (352)
T 3sgz_A          162 GNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQG  241 (352)
T ss_dssp             CCCHHHHHHHHHSCHHHHTTCC---------------CCCTTCCHHHHHHHHHHCCSCEEEEEECSHHHHHHHHHTTCSE
T ss_pred             CcchhhhhcCCCCCcccchhhhcccccccccchhhhhccCCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHcCCCE
Confidence            999999999998775433322211                  001111122    2344445667889999999999999


Q ss_pred             EEEe
Q psy16778        402 LVLT  405 (433)
Q Consensus       402 ivlT  405 (433)
                      |+|+
T Consensus       242 I~vs  245 (352)
T 3sgz_A          242 IVVS  245 (352)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9986

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=99.98  E-value=3.3e-33  Score=277.17  Aligned_cols=217  Identities=34%  Similarity=0.570  Sum_probs=184.9

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778        188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK  263 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~  263 (433)
                      .+++|+...+++++++ ..+.|.+.+++++.    |+.+|++|+|+||+|++++++||+|++||+++++||++||+|+++
T Consensus        28 ~~~~d~~~~A~~~lp~-~~~~y~~~ga~~e~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPmg~~~  106 (392)
T 2nzl_A           28 ICINDYEQHAKSVLPK-SIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQR  106 (392)
T ss_dssp             CSHHHHHHHHHHHSCH-HHHHHHHCCSTTCHHHHHHHHHHHHSCBCCCCSSCCTTCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             CCHHHHHHHHHhhCCH-HHHhhcCCCCCccHHHHHHHHhhheEEeehhhccCCcCCCcceEECCEecCCceEeccccccc
Confidence            6899999999999987 56788877777665    578999999999999999999999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778        264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  343 (433)
Q Consensus       264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~  343 (433)
                      +.||+||.+++++|.++|++|++|+.++.++|+++++.++++.|||+|+++|++.+.+++++|+++||+++++|+|+|+.
T Consensus       107 l~~~~~e~~laraA~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~  186 (392)
T 2nzl_A          107 MAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYL  186 (392)
T ss_dssp             GTSTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHCTTSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSC
T ss_pred             cccchHHHHHHHHHHHcCCCeeccchHHHHHHHHHHhcCCCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCc
Confidence            99999999999999999999999999999999999887778899999999999999999999999999999999999999


Q ss_pred             CccccccccccCCCccchHHHHH----------------------hhCCCc-chhhh---------hhccCCHHHHHHHH
Q psy16778        344 GTRYADIRNKFNMPSHLNIEELA----------------------EKTPQT-TKWFQ---------LYIYRDREITKSLV  391 (433)
Q Consensus       344 G~r~~~~~~~~~~~~~~s~e~i~----------------------~~~~~~-~~w~Q---------ly~~~~~~~~~~~~  391 (433)
                      |+|++|.++++.+|...++..+.                      ....++ ..|-.         +++..+...+.+.+
T Consensus       187 g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKgv~~~e~A  266 (392)
T 2nzl_A          187 GNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDA  266 (392)
T ss_dssp             CCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEEEECCHHHH
T ss_pred             cchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEEecCCHHHH
Confidence            99999999999877554221110                      000011 11211         23333455678999


Q ss_pred             HHHHHcCCcEEEEe
Q psy16778        392 QRAEKAGYKALVLT  405 (433)
Q Consensus       392 ~ra~~~G~~aivlT  405 (433)
                      ++|+++|+++|+|+
T Consensus       267 ~~a~~aGad~I~vs  280 (392)
T 2nzl_A          267 REAVKHGLNGILVS  280 (392)
T ss_dssp             HHHHHTTCCEEEEC
T ss_pred             HHHHHcCCCEEEeC
Confidence            99999999999994

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=99.97  E-value=1.5e-32  Score=270.76  Aligned_cols=215  Identities=26%  Similarity=0.383  Sum_probs=172.4

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778        188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK  263 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~  263 (433)
                      .+++|+...+++++++ ..+.|.+.+++++.    |+.+|++|+|+||+|++++++||+|++||+++++||++||+++++
T Consensus        14 ~~~~d~~~~A~~~l~~-~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPma~~g   92 (368)
T 2nli_A           14 VNTYDLEEEASKVVPH-GGFNYIAGASGDEWTKRANDRAWKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIAAHG   92 (368)
T ss_dssp             SCSHHHHHHHHTTSCH-HHHHHHHCCSBTSHHHHHHHHGGGGEEECCCCCCCCSCCCCCEEETTEEESSSEEECCCSCGG
T ss_pred             CCHHHHHHHHHHhCCH-HHHhhcccCCCccHHHHHHHHHHhheeeeccccCCCccCCcceEECCEecCCceeecchhhcc
Confidence            6899999999999988 56778888877664    579999999999999999999999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778        264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  343 (433)
Q Consensus       264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~  343 (433)
                      +.||+||.+++++|.++|++|++|+.++.++|++++..++++.|||||+++|++.+.+++++|+++||+++++|+|+|+.
T Consensus        93 ~~~~~~e~~la~aa~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~  172 (368)
T 2nli_A           93 LAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVS  172 (368)
T ss_dssp             GTCTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHHTTCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC--
T ss_pred             CCCcHHHHHHHHHHHHcCCCEEeechHhHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcc
Confidence            99999999999999999999999999999999998776677899999999999999999999999999999999999999


Q ss_pred             CccccccccccCCCccchHHHHH----------hh---C---CCcchhh---------hhhccCCHHHHHHHHHHHHHcC
Q psy16778        344 GTRYADIRNKFNMPSHLNIEELA----------EK---T---PQTTKWF---------QLYIYRDREITKSLVQRAEKAG  398 (433)
Q Consensus       344 G~r~~~~~~~~~~~~~~s~e~i~----------~~---~---~~~~~w~---------Qly~~~~~~~~~~~~~ra~~~G  398 (433)
                      |+|++|.+++|.+|  .+++.+.          ..   .   .....|-         .+++..++..+.+.+++|+++|
T Consensus       173 g~r~~d~~~~~~~p--~~~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~G  250 (368)
T 2nli_A          173 GNRDRDVKNKFVYP--FGMPIVQRYLRGTAEGMSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKRG  250 (368)
T ss_dssp             -CBC--------CC--SCCHHHHHHHTTSGGGC-----CTTBCSBCCHHHHHHHHHHSSSCEEEEEECSHHHHHHHHHTT
T ss_pred             cchhHHHhhcccCc--chhhhhhcccccCCCCchHHhhhhccCchhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHcC
Confidence            99999999998766  1111110          00   0   0011111         1334444557889999999999


Q ss_pred             CcEEEEe
Q psy16778        399 YKALVLT  405 (433)
Q Consensus       399 ~~aivlT  405 (433)
                      +++|+|+
T Consensus       251 ad~I~vs  257 (368)
T 2nli_A          251 ASGIWVS  257 (368)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEc
Confidence            9999984

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=99.97  E-value=5e-31  Score=261.33  Aligned_cols=215  Identities=27%  Similarity=0.460  Sum_probs=180.6

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778        188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK  263 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~  263 (433)
                      .+++|+...+++++++ ..+.|.+.+++++.    |+.+|++|+|+||+|++++++|++|++||+++++||++||+|+++
T Consensus         6 ~~~~d~~~~A~~~l~~-~~~~y~~~ga~~~~t~~~n~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pv~iap~~~~~   84 (380)
T 1p4c_A            6 FNVEDYRKLAQKRLPK-MVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNG   84 (380)
T ss_dssp             SSHHHHHHHHHHHSCH-HHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             CCHHHHHHHHHHhCCH-HHHHHhCCCCCccHHHHHHHHHHhheeeeccccCCCccCcceeEECCeecCCceEecCccccc
Confidence            5789999999999988 56788888887775    478999999999999999999999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778        264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  343 (433)
Q Consensus       264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~  343 (433)
                      ++||++|.+++++|.++|+++++|+.++.++|+++++ ++++.|||+|+.+ ++.+.+++++|+++||+++++|+|+|+.
T Consensus        85 ~~~~~~~~~~a~aa~~~G~~~~vss~s~~~le~i~~~-~~~~~~fQly~~~-~~~~~~~i~~a~~aG~~al~vTvd~p~~  162 (380)
T 1p4c_A           85 ALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQ-CDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVN  162 (380)
T ss_dssp             GTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHH-CCSCEEEEECCSS-HHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred             cCCCcHHHHHHHHHHHcCCCeecCccccCCHHHHHhc-cCCCeEEEEEech-HHHHHHHHHHHHHcCCCEEEEeecCccc
Confidence            9999999999999999999999999999999999876 3678999999999 9999999999999999999999999999


Q ss_pred             CccccccccccCCCccchHHHH----------------HhhC----CCcchh-----h----hhhccCCHHHHHHHHHHH
Q psy16778        344 GTRYADIRNKFNMPSHLNIEEL----------------AEKT----PQTTKW-----F----QLYIYRDREITKSLVQRA  394 (433)
Q Consensus       344 G~r~~~~~~~~~~~~~~s~e~i----------------~~~~----~~~~~w-----~----Qly~~~~~~~~~~~~~ra  394 (433)
                      |+|++|.++++..|......++                ....    .....|     .    .+++..++..+.+.++++
T Consensus       163 g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p~~~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a  242 (380)
T 1p4c_A          163 GYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC  242 (380)
T ss_dssp             CCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHH
T ss_pred             cchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCccccHHHHHHHHHhcCCCEEEEecCcHHHHHHH
Confidence            9999999999865533222211                0000    001112     1    123333456788999999


Q ss_pred             HHcCCcEEEEe
Q psy16778        395 EKAGYKALVLT  405 (433)
Q Consensus       395 ~~~G~~aivlT  405 (433)
                      .++|+++|+|+
T Consensus       243 ~~aGad~I~vs  253 (380)
T 1p4c_A          243 IAEGADGVILS  253 (380)
T ss_dssp             HHTTCSEEEEC
T ss_pred             HHcCCCEEEEc
Confidence            99999999994

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=99.97  E-value=3.8e-31  Score=270.57  Aligned_cols=213  Identities=29%  Similarity=0.376  Sum_probs=180.4

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778        188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK  263 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~  263 (433)
                      .+++++...+++++++ ..+.|.+.++.++.    |+.+|++|+|+||+|++++++||+|+|||+++++||+|||+++++
T Consensus       123 ~~~~d~~~~A~~~l~~-~~~~y~~~ga~~e~t~~~N~~af~~i~l~pr~L~dv~~~d~st~i~G~~l~~Pi~iAPma~~~  201 (511)
T 1kbi_A          123 INLYDFEYLASQTLTK-QAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATALCK  201 (511)
T ss_dssp             CSHHHHHHHHHHHSCH-HHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             CCHHHHHHHHHhhCCH-HHhhhccCCCCchhHHHHHHHHhhhhccccccccCcccccCccccCCccCCCCeEeccchhcc
Confidence            6899999999999987 56888888887665    578999999999999999999999999999999999999999999


Q ss_pred             ccCc-cchHHHHHHHHh--cCCceEEecCCCCCHHHHHHhC--CCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEee
Q psy16778        264 LAHE-EGEIGNAAAVGE--VGGIYILSTISTTSIEELAEKT--PQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTV  338 (433)
Q Consensus       264 ~~~~-~~e~~~a~aa~~--~g~~~~~s~~s~~~~eeva~~~--~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltv  338 (433)
                      ++|| +||.+++++|.+  +|++|++|+.++.++|++++..  +.++.|||+|+++|++.+.+++++|+++||++|++|+
T Consensus       202 l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~~~~~~~~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~itv  281 (511)
T 1kbi_A          202 LGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTV  281 (511)
T ss_dssp             GTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEEC
T ss_pred             ccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHHhhcCCCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence            9999 999999999999  9999999999999999998765  3578999999999999999999999999999999999


Q ss_pred             eecccCccccccccccCCCccc---------------------------hHHHHHhhCCCcchhhhhhccCCHHHHHHHH
Q psy16778        339 DTNVFGTRYADIRNKFNMPSHL---------------------------NIEELAEKTPQTTKWFQLYIYRDREITKSLV  391 (433)
Q Consensus       339 D~~~~G~r~~~~~~~~~~~~~~---------------------------s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~  391 (433)
                      |+|.+|+|+++.+++|..|...                           +.+.|.....    ...+++..++..+.+.+
T Consensus       282 d~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~i~~lr~----~~~~PvivKgv~~~e~A  357 (511)
T 1kbi_A          282 DAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKK----KTKLPIVIKGVQRTEDV  357 (511)
T ss_dssp             SCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHHHHH----HCSSCEEEEEECSHHHH
T ss_pred             CCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChHhHHHHHHHHHH----HhCCcEEEEeCCCHHHH
Confidence            9999999999999987655311                           1111111100    00123333444567889


Q ss_pred             HHHHHcCCcEEEEe
Q psy16778        392 QRAEKAGYKALVLT  405 (433)
Q Consensus       392 ~ra~~~G~~aivlT  405 (433)
                      ++|+++|+++|+|+
T Consensus       358 ~~a~~aGad~I~vs  371 (511)
T 1kbi_A          358 IKAAEIGVSGVVLS  371 (511)
T ss_dssp             HHHHHTTCSEEEEC
T ss_pred             HHHHHcCCCEEEEc
Confidence            99999999999994

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=99.97  E-value=5.7e-31  Score=260.35  Aligned_cols=216  Identities=33%  Similarity=0.563  Sum_probs=182.4

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778        188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK  263 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~  263 (433)
                      .+++|+...+++++++ ..+.|.+.+++++.    |+.+|++|+|+||+|++++++|++|++||+++++||++||+|+++
T Consensus         5 ~~~~d~~~~A~~~l~~-~~~~y~~~ga~~~~t~~~N~~~f~~i~l~pr~l~~~~~~d~~t~i~G~~~~~Pi~iAPmg~~~   83 (370)
T 1gox_A            5 TNVNEYEAIAKQKLPK-MVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQK   83 (370)
T ss_dssp             CSTTHHHHHHHHHSCH-HHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             CCHHHHHHHHHHhCCH-HHHhhhCCCCCccHHHHHHHHHHhhheeeccccCCCCCCCCceEECCcccCCceeEcccchhh
Confidence            4688899999999887 55788888877665    578999999999999999999999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778        264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  343 (433)
Q Consensus       264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~  343 (433)
                      ++||+||.+++++|.++|++|++|+.++.++||++++.+ ++.|||+|+++|++.+.+++++++++|++++.+|+|+|..
T Consensus        84 l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~ieev~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~  162 (370)
T 1gox_A           84 MAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL  162 (370)
T ss_dssp             GTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCC-CCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred             hccchHHHHHHHHHHHcCCCeeccCCCCCCHHHHHhhcC-CCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcc
Confidence            999999999999999999999999999999999998765 7899999999999999999999999999999999999999


Q ss_pred             CccccccccccCCCccchHHHHHh--------------------hCCCcchh-----h----hhhccCCHHHHHHHHHHH
Q psy16778        344 GTRYADIRNKFNMPSHLNIEELAE--------------------KTPQTTKW-----F----QLYIYRDREITKSLVQRA  394 (433)
Q Consensus       344 G~r~~~~~~~~~~~~~~s~e~i~~--------------------~~~~~~~w-----~----Qly~~~~~~~~~~~~~ra  394 (433)
                      |+|+++.++++..|...++..+.+                    .......|     .    .+++..+...+.+.+++|
T Consensus       163 g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~vK~~~~~e~a~~a  242 (370)
T 1gox_A          163 GRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA  242 (370)
T ss_dssp             CCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHH
T ss_pred             cccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccchHHHHHHHHHHhCCCEEEEecCCHHHHHHH
Confidence            999999999987665442222211                    00000111     1    123334455678899999


Q ss_pred             HHcCCcEEEEe
Q psy16778        395 EKAGYKALVLT  405 (433)
Q Consensus       395 ~~~G~~aivlT  405 (433)
                      .++|+++|+|+
T Consensus       243 ~~~Gad~I~vs  253 (370)
T 1gox_A          243 VQHGAAGIIVS  253 (370)
T ss_dssp             HHTTCSEEEEC
T ss_pred             HHcCCCEEEEC
Confidence            99999999994

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.85  E-value=1e-20  Score=171.41  Aligned_cols=168  Identities=36%  Similarity=0.640  Sum_probs=139.2

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcE
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTG  113 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (433)
                      ...+|.+|+|+|+|||||||+++.|++.+|..++++|++...........++.+++.....+++.+++.+......+..+
T Consensus        25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~v  104 (200)
T 4eun_A           25 TGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGVST  104 (200)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhcCCCE
Confidence            34578899999999999999999999999999999999865432333345888887777777788888888777788889


Q ss_pred             EEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHH
Q psy16778        114 VLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEG  192 (433)
Q Consensus       114 Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee  192 (433)
                      |++++...+.+++.+.+... ..+|||+++++++.+|+.+|.+.+...+.+..+++.+++++  .+.++++||++.++++
T Consensus       105 iid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~--~~~~~~~Id~~~~~~e  182 (200)
T 4eun_A          105 IITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFMPASLLQSQLATLEALE--PDESGIVLDLRQPPEQ  182 (200)
T ss_dssp             EEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSSCGGGHHHHHHHCCCCC--TTSCEEEEETTSCHHH
T ss_pred             EEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCCCHHHHHHHHHHhCCCC--CCCCeEEEECCCCHHH
Confidence            99999888888888887644 68999999999999999999876667778889998888876  4458899999999999


Q ss_pred             HHHHHhcCCCC
Q psy16778        193 IVSKSAIMPPT  203 (433)
Q Consensus       193 ~~~~i~~~l~~  203 (433)
                      ++++|.+.+..
T Consensus       183 ~~~~I~~~l~~  193 (200)
T 4eun_A          183 LIERALTWLDI  193 (200)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHh
Confidence            99999887764

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.84  E-value=3.3e-20  Score=164.06  Aligned_cols=165  Identities=45%  Similarity=0.844  Sum_probs=129.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      .++.+|+|+|++||||||+++.|++.+|..++++|++...........|..+++.....+++.+++.+......+..+|+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi   85 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLI   85 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcCCcEEE
Confidence            45789999999999999999999999999999999986432111223466776655566777777777776666778999


Q ss_pred             EcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHH
Q psy16778        116 VCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIV  194 (433)
Q Consensus       116 ~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~  194 (433)
                      +++...+.+++.+++... ..+|||++|++++.+|+.+|.+.......+..++..++++++ .+.++++||++.+++++.
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Id~~~~~~~~~  164 (175)
T 1knq_A           86 VCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGA-DETDVLVVDIDQPLEGVV  164 (175)
T ss_dssp             ECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHHCCCCCT-TCTTEEEEECSSCHHHHH
T ss_pred             EeCchHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCCchHHHHHHHHhhhCccc-CCCCeEEEeCCCCHHHHH
Confidence            988888888888887643 579999999999999999997655556777777777777622 456899999999999999


Q ss_pred             HHHhcCC
Q psy16778        195 SKSAIMP  201 (433)
Q Consensus       195 ~~i~~~l  201 (433)
                      ++|.+.+
T Consensus       165 ~~i~~~l  171 (175)
T 1knq_A          165 ASTIEVI  171 (175)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987654

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.81  E-value=3.1e-19  Score=161.71  Aligned_cols=160  Identities=43%  Similarity=0.725  Sum_probs=127.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEE
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLV  116 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~  116 (433)
                      ++++|+|+|++||||||+++.|++.+|+.++++|.+...........+..++......+++.+.+.+    ..+..+|++
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~----~~~~~vivd   92 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERL----ASREPVVVS   92 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHH----TSSSCCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHH----hcCCCEEEE
Confidence            3579999999999999999999999999999999987543333344566666554445555444433    567789999


Q ss_pred             cCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHH
Q psy16778        117 CSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIV  194 (433)
Q Consensus       117 ~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~  194 (433)
                      ++.....+++.+.+...  ..+|||++|++++.+|+.+|.+...+.+.+..++..+++++  .+.++++|+++.++++++
T Consensus        93 ~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Id~~~~~~e~~  170 (202)
T 3t61_A           93 CSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLETLEDPR--GEVRTVAVDVAQPLAEIV  170 (202)
T ss_dssp             CCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHCCCCT--TSTTEEEEESSSCHHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHhcCCCC--CCCCeEEEeCCCCHHHHH
Confidence            99888888888887543  58999999999999999999876666778888888888875  455889999999999999


Q ss_pred             HHHhcCCC
Q psy16778        195 SKSAIMPP  202 (433)
Q Consensus       195 ~~i~~~l~  202 (433)
                      ++|.+.+.
T Consensus       171 ~~I~~~l~  178 (202)
T 3t61_A          171 REALAGLA  178 (202)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99977654

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=99.80  E-value=3.2e-21  Score=186.80  Aligned_cols=140  Identities=31%  Similarity=0.459  Sum_probs=117.8

Q ss_pred             CCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc------------
Q psy16778        289 ISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD------------  349 (433)
Q Consensus       289 ~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~------------  349 (433)
                      .+..+||++|+...+...|-|+...+++|.+...|+.|.+. .+...++      ++.+.++|++..-            
T Consensus         3 ~~~~d~~~~A~~~lp~~~~~Y~~~ga~~e~t~~~N~~af~~~~l~prvl~dv~~~d~~t~llG~~~~~P~~iaP~g~~~l   82 (352)
T 3sgz_A            3 VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSI   82 (352)
T ss_dssp             CSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHTCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGGG
T ss_pred             CCHHHHHHHHHHHCCHHHHHHHhcCCcchHHHHHHHHHHHhceeeccccCCCCCCCCceEECCcccCCcceechHHHHHh
Confidence            45578999999888888999999999999999999999766 7777666      3558888887651            


Q ss_pred             -----------cccccC------CCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCC
Q psy16778        350 -----------IRNKFN------MPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFG  412 (433)
Q Consensus       350 -----------~~~~~~------~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g  412 (433)
                                 .+...+      ..+++|+|||+++.++++.|||||+++|+..+.++++||+++||++||||||+|+.|
T Consensus        83 ~~~~ge~~~araa~~~gi~~~lSt~ss~s~e~v~~~~~~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g  162 (352)
T 3sgz_A           83 AWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLG  162 (352)
T ss_dssp             TCTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHSTTCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCC
T ss_pred             cCccHHHHHHHHHHHcCCCeEeCCCCCCCHHHHHHhccCccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence                       111112      235679999999988778999999999999999999999999999999999999999


Q ss_pred             CchhhhhcCCCCCCCC
Q psy16778        413 TRYADIRNKFNMPSHL  428 (433)
Q Consensus       413 ~r~~~~r~~~~~~~~~  428 (433)
                      +||+|.|++|++|+++
T Consensus       163 ~R~~d~r~~~~~p~~~  178 (352)
T 3sgz_A          163 NRRRDKRNQLNLEANI  178 (352)
T ss_dssp             CCHHHHHHHHHSCHHH
T ss_pred             cchhhhhcCCCCCccc
Confidence            9999999999988543

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=2.3e-18  Score=155.76  Aligned_cols=168  Identities=14%  Similarity=0.139  Sum_probs=108.9

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHH
Q psy16778         26 TTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQ  105 (433)
Q Consensus        26 ~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (433)
                      ..++++++++.++++|+|+|+|||||||+++.|++.+|+.++++|++.....  +......++ ..++..++.++..+..
T Consensus        13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g~~i~~~~~-~~~~~~~~~~e~~~l~   89 (199)
T 3vaa_A           13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--HKTVGELFT-ERGEAGFRELERNMLH   89 (199)
T ss_dssp             -----------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--CCcHHHHHH-hcChHHHHHHHHHHHH
Confidence            3567888999999999999999999999999999999999999998764311  111111111 1223445555554444


Q ss_pred             hhhCCCcEEEEcCcc---cHHHHHHHHhcCCeEEEEEEcCHHHHHHHHH-HhhCCCC----C----HHhHHHHHhhccCC
Q psy16778        106 LNVDNLTGVLVCSAL---RRNYRDIIRNNNRVVFIYLKAEFGVILSRLQ-KRAEHFM----P----ADLLESQFQTLEEP  173 (433)
Q Consensus       106 ~~~~~~~~Vi~~~~~---~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~-~R~~~~~----~----~~~l~~~~~~~~~~  173 (433)
                      .+..+.++||++++.   ....++.+.+.  ..+|||++|++++.+|+. .|..++.    .    .+.+...+..+.+.
T Consensus        90 ~l~~~~~~vi~~ggg~~~~~~~~~~l~~~--~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~  167 (199)
T 3vaa_A           90 EVAEFENVVISTGGGAPCFYDNMEFMNRT--GKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPF  167 (199)
T ss_dssp             HHTTCSSEEEECCTTGGGSTTHHHHHHHH--SEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcCCcEEECCCcEEccHHHHHHHHcC--CEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHH
Confidence            444556789987653   34445566554  489999999999999998 4543332    1    23456666666666


Q ss_pred             CCCCCCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778        174 DPLVEPDVRTVSVN-EPLEGIVSKSAIMP  201 (433)
Q Consensus       174 ~~~~~~~~~~Id~~-~~~ee~~~~i~~~l  201 (433)
                      |  .. ++++|+++ .++++++++|.+.+
T Consensus       168 y--~~-ad~~Idt~~~s~ee~~~~I~~~l  193 (199)
T 3vaa_A          168 Y--TQ-AQYIFNADELEDRWQIESSVQRL  193 (199)
T ss_dssp             H--TT-SSEEEECCCCSSHHHHHHHHHHH
T ss_pred             H--hh-CCEEEECCCCCHHHHHHHHHHHH
Confidence            5  33 78999998 69999999887654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.69  E-value=3e-18  Score=160.05  Aligned_cols=183  Identities=16%  Similarity=0.178  Sum_probs=113.6

Q ss_pred             ccccccc-eeee-ccCCccceeeeeecccCCCCCCCCC---CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccc
Q psy16778          2 AVSNFGN-WRYW-GMWPPQYVVTLIMTTTLSPSGEGSP---STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS   76 (433)
Q Consensus         2 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~   76 (433)
                      +++++++ ++.| +.          ...+.++++++.+   +.+|+|+|+|||||||+++.|++.+|+.++|+|.+.+..
T Consensus        17 ~l~~~~~~~~~~~~~----------~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~   86 (250)
T 3nwj_A           17 LLETGSLLHSPFDEE----------QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQA   86 (250)
T ss_dssp             -------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             ceEEcceeeEEecCc----------chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHH
Confidence            4788899 9999 43          2356677788888   999999999999999999999999999999999886432


Q ss_pred             cccccccCCCCCCcCChhHHHHHHH-HHHHhhhCCCcEEEEcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHH
Q psy16778         77 NIDKMSAKQPLNDEDRRPWLNNINR-IIHQLNVDNLTGVLVCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQK  152 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Vi~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~  152 (433)
                      . .+......|+ ..++..++..+. .+..+.....+.||++++   .....++.++.   ..+|||++|++++.+|+.+
T Consensus        87 ~-~g~~i~~i~~-~~ge~~fr~~e~~~l~~l~~~~~~~Via~GgG~v~~~~~~~~l~~---~~vV~L~a~~e~l~~Rl~~  161 (250)
T 3nwj_A           87 M-KGTSVAEIFE-HFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHK---GISIWLDVPLEALAHRIAA  161 (250)
T ss_dssp             S-TTSCHHHHHH-HHCHHHHHHHHHHHHHHHHHHCSSEEEECCGGGGGSHHHHHHHTT---SEEEEEECCHHHHHHHHHC
T ss_pred             h-cCccHHHHHH-HhCcHHHHHHHHHHHHHHHhhcCCcEEecCCCeecCHHHHHHHhC---CcEEEEECCHHHHHHHHhh
Confidence            1 0111111111 224455555555 344444432467777664   34556666754   3899999999999999975


Q ss_pred             hh--CCCCC------------HHhHHHHHhhccCCCCCCCCCeEEE------------ccC-CCHHHHHHHHhcCCC
Q psy16778        153 RA--EHFMP------------ADLLESQFQTLEEPDPLVEPDVRTV------------SVN-EPLEGIVSKSAIMPP  202 (433)
Q Consensus       153 R~--~~~~~------------~~~l~~~~~~~~~~~~~~~~~~~~I------------d~~-~~~ee~~~~i~~~l~  202 (433)
                      +.  .++..            .+.+...+..+++.|.  . ++++|            |++ .+++++++.|...+.
T Consensus       162 ~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~--~-ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~  235 (250)
T 3nwj_A          162 VGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYT--K-ASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQ  235 (250)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHHHT--T-SSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHh--h-CCEEEEecccccccccccCCCCCHHHHHHHHHHHHH
Confidence            32  22221            2346666777776653  3 66777            887 999999999876653

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.67  E-value=5.3e-17  Score=144.64  Aligned_cols=158  Identities=15%  Similarity=0.126  Sum_probs=108.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhCCCcE
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVDNLTG  113 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  113 (433)
                      ++.+|+|+|++||||||+++.|++++|+.++|+|.+....      .|..+.+   ..++..++..+..+...+.....+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~------~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   77 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKR------TGADIAWIFEMEGEAGFRRREREMIEALCKLDNI   77 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHH------HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHH------cCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCc
Confidence            3578999999999999999999999999999999986431      1222111   112344444444433333333456


Q ss_pred             EEEcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHH--HHhhCCCCC-----HHhHHHHHhhccCCCCCCCCCeEE
Q psy16778        114 VLVCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRL--QKRAEHFMP-----ADLLESQFQTLEEPDPLVEPDVRT  183 (433)
Q Consensus       114 Vi~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl--~~R~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~  183 (433)
                      ||++++   .....++.+.+.+  .+|||++|++++.+|+  ..+..++..     .+.+...+..+.+.|  +..++++
T Consensus        78 vi~~gg~~~~~~~~~~~l~~~~--~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y--~~~ad~~  153 (185)
T 3trf_A           78 ILATGGGVVLDEKNRQQISETG--VVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLY--QAMADLV  153 (185)
T ss_dssp             EEECCTTGGGSHHHHHHHHHHE--EEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHH--HHHCSEE
T ss_pred             EEecCCceecCHHHHHHHHhCC--cEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHH--hhcCCEE
Confidence            777654   5566777787763  8999999999999999  544333321     234566666665554  3336799


Q ss_pred             EccC-CCHHHHHHHHhcCCCCC
Q psy16778        184 VSVN-EPLEGIVSKSAIMPPTR  204 (433)
Q Consensus       184 Id~~-~~~ee~~~~i~~~l~~~  204 (433)
                      |+++ .+++++++.|.+.+...
T Consensus       154 Idt~~~~~~e~~~~I~~~l~~~  175 (185)
T 3trf_A          154 YPTDDLNPRQLATQILVDIKQT  175 (185)
T ss_dssp             EECTTCCHHHHHHHHHHHSCC-
T ss_pred             EECCCCCHHHHHHHHHHHHHHH
Confidence            9998 69999999999888663

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.67  E-value=2.3e-16  Score=142.66  Aligned_cols=158  Identities=19%  Similarity=0.207  Sum_probs=111.5

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCe--EEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVK--FIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~--~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (433)
                      +...+|.+|+|+|+|||||||+++.|++.+   |..  ++++|++...     +..+..+..+....++..+..+.....
T Consensus        20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (200)
T 3uie_A           20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHG-----LNRDLSFKAEDRAENIRRVGEVAKLFA   94 (200)
T ss_dssp             HHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT-----TTTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhH-----hhcccCcChHHHHHHHHHHHHHHHHHH
Confidence            446789999999999999999999999998   776  9999987532     122333443334445555556666666


Q ss_pred             hCCCcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHH------HHhhCCCCCHHhHHHHHhhccCCCCCCC
Q psy16778        108 VDNLTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRL------QKRAEHFMPADLLESQFQTLEEPDPLVE  178 (433)
Q Consensus       108 ~~~~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl------~~R~~~~~~~~~l~~~~~~~~~~~~~~~  178 (433)
                      ..+..+|+++....+.+++.+++...   +++|||++|++++.+|+      ..|.++......+.   ..++++    .
T Consensus        95 ~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~~~~---~~~~~~----~  167 (200)
T 3uie_A           95 DAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGID---DPYEPP----L  167 (200)
T ss_dssp             HTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCBTTT---BCCCCC----S
T ss_pred             hCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCCCCC---CcCcCC----C
Confidence            67777888888777888888887543   67899999999999997      44544333222111   112222    2


Q ss_pred             CCeEEEccC--CCHHHHHHHHhcCCC
Q psy16778        179 PDVRTVSVN--EPLEGIVSKSAIMPP  202 (433)
Q Consensus       179 ~~~~~Id~~--~~~ee~~~~i~~~l~  202 (433)
                      .++++||++  .+++++++.|.+.+.
T Consensus       168 ~~~~~idt~~~~~~~e~v~~i~~~l~  193 (200)
T 3uie_A          168 NCEISLGREGGTSPIEMAEKVVGYLD  193 (200)
T ss_dssp             SCSEEECCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCEEEecCCCCCHHHHHHHHHHHHH
Confidence            377999997  499999999877653

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.62  E-value=1.1e-14  Score=128.65  Aligned_cols=159  Identities=14%  Similarity=0.128  Sum_probs=99.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE--eCCCCCcccccccc--ccCCCCCCc---CChhHHHHH----HHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFI--DGDHLHPQSNIDKM--SAKQPLNDE---DRRPWLNNI----NRIIHQ  105 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~i--d~D~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~----~~~~~~  105 (433)
                      ++++|+|+|+|||||||+++.|+++++..++  +.|.++........  ..+..+.+.   .....++..    ...+..
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence            4679999999999999999999999987665  47765421111000  011111111   112223322    233455


Q ss_pred             hhhCCCcEEEEcCcc-c----HHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCC
Q psy16778        106 LNVDNLTGVLVCSAL-R----RNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPD  180 (433)
Q Consensus       106 ~~~~~~~~Vi~~~~~-~----~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~  180 (433)
                      +...+.++|+++... .    +.+++.+.... ..+|||++|.+++.+|+.+|..++..  ....+++..+.+   . .+
T Consensus        82 ~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~~~e~l~~R~~~r~~~~~~--~~~~~~~~~~~~---~-~~  154 (178)
T 1qhx_A           82 MARAGARIIIDDVFLGGAAAQERWRSFVGDLD-VLWVGVRCDGAVAEGRETARGDRVAG--MAAKQAYVVHEG---V-EY  154 (178)
T ss_dssp             HHHTTCEEEEEECCTTTHHHHHHHHHHHTTCC-EEEEEEECCHHHHHHHHHHTSSSCTT--HHHHHTTGGGTT---C-CC
T ss_pred             HHhcCCeEEEEeccccChHHHHHHHHHhcCCc-EEEEEEECCHHHHHHHHHhhCCcccc--hhhhhchhhccC---C-CC
Confidence            566777788888653 1    24455553321 57899999999999999998754433  223334333332   1 27


Q ss_pred             eEEEccC-CCHHHHHHHHhcCCC
Q psy16778        181 VRTVSVN-EPLEGIVSKSAIMPP  202 (433)
Q Consensus       181 ~~~Id~~-~~~ee~~~~i~~~l~  202 (433)
                      +++|+++ .+++++++.|...+.
T Consensus       155 d~~idt~~~~~~~~~~~I~~~l~  177 (178)
T 1qhx_A          155 DVEVDTTHKESIECAWAIAAHVV  177 (178)
T ss_dssp             SEEEETTSSCHHHHHHHHHTTCC
T ss_pred             cEEEECCCCCHHHHHHHHHHHhc
Confidence            7999998 799999999988763

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.60  E-value=4.8e-16  Score=138.35  Aligned_cols=156  Identities=21%  Similarity=0.250  Sum_probs=102.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHH-HHHHHhhhCCCcE
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNIN-RIIHQLNVDNLTG  113 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~  113 (433)
                      +++|+|+|++||||||+++.|++++|++++|.|.+.....      |....+   ..+...++..+ ..+..+.... .+
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~   74 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT------GRSIADIFATDGEQEFRRIEEDVVRAALADH-DG   74 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------SSCHHHHHHHHCHHHHHHHHHHHHHHHHHHC-CS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc------CCCHHHHHHHhChHHHHHHHHHHHHHHHhcC-Ce
Confidence            4679999999999999999999999999999999864321      211110   11223333332 2333333333 45


Q ss_pred             EEEcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC-C----HHhHHHHHhhccCCCCCCCCCeEEEc
Q psy16778        114 VLVCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM-P----ADLLESQFQTLEEPDPLVEPDVRTVS  185 (433)
Q Consensus       114 Vi~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~Id  185 (433)
                      |+.+++   ..+..++.+. .  ..+|||++|++++.+|+.+|.+++. .    .+.+..++..+.+.+  .+.++++||
T Consensus        75 vi~~g~~~v~~~~~~~~l~-~--~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~--~~~~~~~Id  149 (184)
T 2iyv_A           75 VLSLGGGAVTSPGVRAALA-G--HTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLY--RRVATMRVD  149 (184)
T ss_dssp             EEECCTTGGGSHHHHHHHT-T--SCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHH--HHHCSEEEE
T ss_pred             EEecCCcEEcCHHHHHHHc-C--CeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHH--hccCCEEEE
Confidence            665543   3345565554 2  3799999999999999988854332 1    234555554444332  223679999


Q ss_pred             cC-CCHHHHHHHHhcCCCCCC
Q psy16778        186 VN-EPLEGIVSKSAIMPPTRA  205 (433)
Q Consensus       186 ~~-~~~ee~~~~i~~~l~~~~  205 (433)
                      ++ .+++++.+.|.+.+....
T Consensus       150 t~~~s~ee~~~~I~~~l~~~~  170 (184)
T 2iyv_A          150 TNRRNPGAVVRHILSRLQVPS  170 (184)
T ss_dssp             CSSSCHHHHHHHHHTTSCCCC
T ss_pred             CCCCCHHHHHHHHHHHHhhcC
Confidence            99 899999999999887644

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.59  E-value=4.7e-15  Score=130.03  Aligned_cols=147  Identities=16%  Similarity=0.189  Sum_probs=96.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEc-
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVC-  117 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~-  117 (433)
                      ++|+|+|++||||||+++.|++++|+.+++.|.+.....             .....+.    .. ..+..+..++.+. 
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~-------------~~~~~~~----~~-~~l~~~~~vi~dr~   63 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS-------------GNEKLFE----HF-NKLADEDNVIIDRF   63 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT-------------CHHHHHH----HH-HHHTTCCSEEEESC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh-------------HHHHHHH----HH-HHHHhCCCeEEeee
Confidence            489999999999999999999999999999998753211             0011111    11 1233455566552 


Q ss_pred             --------------CcccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCe
Q psy16778        118 --------------SALRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDV  181 (433)
Q Consensus       118 --------------~~~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~  181 (433)
                                    +.....++..+.... . ..+|||++|++++.+|+.+|+......+.++...+.++++......++
T Consensus        64 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (173)
T 3kb2_A           64 VYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHT  143 (173)
T ss_dssp             HHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSSCE
T ss_pred             ecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhhcCCCE
Confidence                          223455665555431 2 689999999999999999985443443344433333332211112478


Q ss_pred             EEEccC-CCHHHHHHHHhcCCCC
Q psy16778        182 RTVSVN-EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       182 ~~Id~~-~~~ee~~~~i~~~l~~  203 (433)
                      ++||++ .+++++.++|.+.+..
T Consensus       144 ~~id~~~~~~~ev~~~I~~~~~~  166 (173)
T 3kb2_A          144 YSWDTGQWSSDEIAKDIIFLVEL  166 (173)
T ss_dssp             EEEETTTSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHHHHhC
Confidence            999998 6999999998876654

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.59  E-value=1.6e-16  Score=139.80  Aligned_cols=159  Identities=19%  Similarity=0.241  Sum_probs=96.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      +++++|+|+|+|||||||+++.|++.+|.+++++|.+.....  ....+..++. .+...++..+..+...+....++++
T Consensus         2 ~~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~-~g~~~~~~~~~~~l~~l~~~~~~v~   78 (173)
T 1kag_A            2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDL-EGEEGFRDREEKVINELTEKQGIVL   78 (173)
T ss_dssp             -CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHH-HHHHHHHHHHHHHHHHHHTSSSEEE
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHH-HhHHHHHHHHHHHHHHHHhCCCeEE
Confidence            456799999999999999999999999999999998753211  1011111111 1112222222222222333446777


Q ss_pred             EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC-----C-HHhHHHHHhhccCCCCCCCCCeEEEcc
Q psy16778        116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM-----P-ADLLESQFQTLEEPDPLVEPDVRTVSV  186 (433)
Q Consensus       116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~-----~-~~~l~~~~~~~~~~~~~~~~~~~~Id~  186 (433)
                      .+++   ..+..++.++...  .++||+++++++.+|+.+|..++.     . .+.+..++..+++.|  .+.++++|++
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~--~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~--~~~a~~~id~  154 (173)
T 1kag_A           79 ATGGGSVKSRETRNRLSARG--VVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLY--EEIADVTIRT  154 (173)
T ss_dssp             ECCTTGGGSHHHHHHHHHHS--EEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHH--HHHCSEEC--
T ss_pred             ECCCeEEecHHHHHHHHhCC--EEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHH--HhhCCEEEEC
Confidence            6532   3455667776654  899999999999999988754332     1 456666666655543  3346899999


Q ss_pred             C-CCHHHHHHHHhcCC
Q psy16778        187 N-EPLEGIVSKSAIMP  201 (433)
Q Consensus       187 ~-~~~ee~~~~i~~~l  201 (433)
                      + .+++++.++|.+.+
T Consensus       155 ~~~~~~~~~~~i~~~l  170 (173)
T 1kag_A          155 DDQSAKVVANQIIHML  170 (173)
T ss_dssp             ---CHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            8 89999999987654

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.58  E-value=5.7e-16  Score=135.80  Aligned_cols=151  Identities=16%  Similarity=0.211  Sum_probs=94.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHH-HHHhhhCCCcE-
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRI-IHQLNVDNLTG-  113 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~-  113 (433)
                      .+|+|+|++||||||+++.|++++|++++|+|.+.....      |....+   ..++..++..+.. +..+. +..++ 
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~l~~~~-~~~~~~   80 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV------GLSVREIFEELGEDNFRMFEKNLIDELK-TLKTPH   80 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHTCHHHHHHHHHHHHHHHH-TCSSCC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh------CCCHHHHHHHhCHHHHHHHHHHHHHHHH-hcCCCE
Confidence            689999999999999999999999999999998864321      221111   1233444443333 33333 33356 


Q ss_pred             EEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh--CCCC-C-HHhHHHHHhhccCCCCCCCCCeEEEccCCC
Q psy16778        114 VLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA--EHFM-P-ADLLESQFQTLEEPDPLVEPDVRTVSVNEP  189 (433)
Q Consensus       114 Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~--~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~  189 (433)
                      |+++++..... +.+...  ..+|||++|++++.+|+.+|.  +++. . .+.+...+..+.+.+  .+.++++|+++.+
T Consensus        81 Vi~~g~g~~~~-~~l~~~--~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~~--~~~a~~~Id~~~~  155 (168)
T 1zuh_A           81 VISTGGGIVMH-ENLKGL--GTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALY--EKNASFIIDARGG  155 (168)
T ss_dssp             EEECCGGGGGC-GGGTTS--EEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHHH--HHTCSEEEEGGGC
T ss_pred             EEECCCCEech-hHHhcC--CEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHHH--HHHCCEEEECCCC
Confidence            77654322111 113222  589999999999999998772  2221 1 334444444443332  2336799999889


Q ss_pred             HHHHHHHHhcCC
Q psy16778        190 LEGIVSKSAIMP  201 (433)
Q Consensus       190 ~ee~~~~i~~~l  201 (433)
                      ++++.++|.+.+
T Consensus       156 ~e~~~~~I~~~l  167 (168)
T 1zuh_A          156 LNNSLKQVLQFI  167 (168)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.58  E-value=2.3e-14  Score=134.87  Aligned_cols=157  Identities=18%  Similarity=0.311  Sum_probs=110.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH---hCCeEE--eCCCCCccccccccccCCCCCCcCChhHHHH-HHHHHHHhhhC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR---LGVKFI--DGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN-INRIIHQLNVD  109 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~---lg~~~i--d~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  109 (433)
                      .++++|+|+|+|||||||+++.|++.   +|+.++  +.|.+....      .+  +... .+..++. ....+...+..
T Consensus         2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l------~~--~~~~-~e~~~~~~~~~~i~~~l~~   72 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF------PV--WKEK-YEEFIKKSTYRLIDSALKN   72 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTS------SS--CCGG-GHHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHH------hh--hhHH-HHHHHHHHHHHHHHHHhhC
Confidence            45689999999999999999999998   688877  888764321      11  2222 2333333 23445555555


Q ss_pred             CCcEEEEcCcccHHHHHHHHhc----CC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCC-CC-CCCeE
Q psy16778        110 NLTGVLVCSALRRNYRDIIRNN----NR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDP-LV-EPDVR  182 (433)
Q Consensus       110 ~~~~Vi~~~~~~~~~~~~l~~~----~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~  182 (433)
                       ..+|+++......+++.+...    .. ..+|||++|++++.+|+.+|+ ++.+.+.+...+..++++.. ++ +..++
T Consensus        73 -~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~-~~~~~~~l~~~~~~~e~~~~~~~~~~~~~  150 (260)
T 3a4m_A           73 -YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG-EKIPNEVIKKMYEKFDEPGKKYKWDEPFL  150 (260)
T ss_dssp             -SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT-CSSCHHHHHHHHHHCCCTTSSCGGGCCSE
T ss_pred             -CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC-CCCCHHHHHHHHHHhcCccccCCCCCCEE
Confidence             678888776666665555432    22 689999999999999999886 44566777777777776642 11 34679


Q ss_pred             EEccCC--CHHHHHHHHhcCCCC
Q psy16778        183 TVSVNE--PLEGIVSKSAIMPPT  203 (433)
Q Consensus       183 ~Id~~~--~~ee~~~~i~~~l~~  203 (433)
                      +||++.  +++++.+.|...+..
T Consensus       151 ~Id~~~~~~~~ei~~~I~~~l~~  173 (260)
T 3a4m_A          151 IIDTTKDIDFNEIAKKLIEKSKE  173 (260)
T ss_dssp             EEETTSCCCHHHHHHHHHHHHTS
T ss_pred             EEeCCCCCCHHHHHHHHHhcccC
Confidence            999984  899999998877655

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.57  E-value=4.5e-15  Score=129.81  Aligned_cols=152  Identities=16%  Similarity=0.249  Sum_probs=101.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      |+|+|+|++||||||+++.|++.+|++++++|.+....      .|..+..   ..+...++.++..+...+.....+||
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi   74 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKR------EGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVI   74 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHH------HTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHH------cCCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEE
Confidence            57999999999999999999999999999999885431      1211110   12334444444444344443457888


Q ss_pred             EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC---CHHhHHHHHhhccCCCCCCCCCeEEEccC-C
Q psy16778        116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM---PADLLESQFQTLEEPDPLVEPDVRTVSVN-E  188 (433)
Q Consensus       116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~Id~~-~  188 (433)
                      +++.   ..+.+++.+.+.  ..+|||++|++++.+|+.+|..++.   ..+.+...+..+.+.+  .+ ++++| ++ .
T Consensus        75 ~~g~~~~~~~~~~~~l~~~--~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~~--~~-~~~~i-~~~~  148 (168)
T 2pt5_A           75 STGGGLGANEEALNFMKSR--GTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEERRKIY--SK-ADIKV-KGEK  148 (168)
T ss_dssp             ECCHHHHTCHHHHHHHHTT--SEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHHH--TT-SSEEE-ECSS
T ss_pred             ECCCCEeCCHHHHHHHHcC--CEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHH--Hh-CCEEE-CCCC
Confidence            7543   455666777654  4899999999999999988643322   1334455554443333  33 56777 66 8


Q ss_pred             CHHHHHHHHhcCCC
Q psy16778        189 PLEGIVSKSAIMPP  202 (433)
Q Consensus       189 ~~ee~~~~i~~~l~  202 (433)
                      +++++.++|.+.+.
T Consensus       149 ~~~~~~~~i~~~l~  162 (168)
T 2pt5_A          149 PPEEVVKEILLSLE  162 (168)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999877654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.57  E-value=4.1e-16  Score=137.70  Aligned_cols=154  Identities=19%  Similarity=0.266  Sum_probs=101.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      ++|+|+|+|||||||+++.|++.+|++++|+|.+.+..      .|.....   ..++..++..+..+...+.....+||
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~------~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi   78 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQK------FNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACI   78 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH------HTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHH------cCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEE
Confidence            37999999999999999999999999999999886431      1211111   12234444444433333444456788


Q ss_pred             EcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh--CCCCC--HHhHHHHHhhccCCCCCCCCCeEEEccC-CCH
Q psy16778        116 VCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA--EHFMP--ADLLESQFQTLEEPDPLVEPDVRTVSVN-EPL  190 (433)
Q Consensus       116 ~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~--~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~Id~~-~~~  190 (433)
                      ++++.....+. +++.  ..+|||++|++++.+|+.+|.  .++..  .+.+...+..+.+.|  .+.++++||++ .++
T Consensus        79 ~~g~~~~~~~~-l~~~--~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~y--~~~~~~~Idt~~~~~  153 (175)
T 1via_A           79 ATGGGFVNVSN-LEKA--GFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKY--EQKANFILNIENKNI  153 (175)
T ss_dssp             ECCTTGGGSTT-GGGG--CEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHH--HHHCSEEEECTTCCH
T ss_pred             ECCCCEehhhH-HhcC--CEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHHH--HhcCCEEEECCCCCH
Confidence            86542211122 4444  489999999999999998773  33322  445666666555443  22257999999 899


Q ss_pred             HHHHHHHhcCCCC
Q psy16778        191 EGIVSKSAIMPPT  203 (433)
Q Consensus       191 ee~~~~i~~~l~~  203 (433)
                      +++++.|.+.+..
T Consensus       154 eev~~~I~~~l~~  166 (175)
T 1via_A          154 DELLSEIKKVIKE  166 (175)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.56  E-value=3.8e-15  Score=130.88  Aligned_cols=153  Identities=21%  Similarity=0.255  Sum_probs=101.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      ++|+|+|++||||||+++.|++.+|+++++.|.+....      .|.....   ..+...++.++..+...+. +.++||
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi   75 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT------SGMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVV   75 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH------HCSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH------hCCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEE
Confidence            57999999999999999999999999999999875431      1221111   1122333333333333333 446788


Q ss_pred             EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHH--Hh-hCCCCC-----HHhHHHHHhhccCCCCCCCCCeEEE
Q psy16778        116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQ--KR-AEHFMP-----ADLLESQFQTLEEPDPLVEPDVRTV  184 (433)
Q Consensus       116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~--~R-~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~I  184 (433)
                      ++++   ..+..++.+.+.  ..+|||++|++++.+|+.  +| ..++..     ...+..++....+.+  .. ++++|
T Consensus        76 ~~g~~~~~~~~~~~~l~~~--~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~I  150 (173)
T 1e6c_A           76 ATGGGMVLLEQNRQFMRAH--GTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALY--QD-VAHYV  150 (173)
T ss_dssp             ECCTTGGGSHHHHHHHHHH--SEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHH--HH-HCSEE
T ss_pred             ECCCcEEeCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHH--Hh-CcEEE
Confidence            7653   445666666654  389999999999999998  77 323322     122444444443332  22 57899


Q ss_pred             ccC-CCHHHHHHHHhcCCCC
Q psy16778        185 SVN-EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       185 d~~-~~~ee~~~~i~~~l~~  203 (433)
                      |++ .+++++.+.|.+.+..
T Consensus       151 d~~~~~~~~~~~~i~~~l~~  170 (173)
T 1e6c_A          151 VDATQPPAAIVCELMQTMRL  170 (173)
T ss_dssp             EETTSCHHHHHHHHHHHTTC
T ss_pred             ECCCCCHHHHHHHHHHHhcc
Confidence            999 8999999999887654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.55  E-value=7.8e-15  Score=131.15  Aligned_cols=156  Identities=13%  Similarity=0.133  Sum_probs=94.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHH--------HHHHHHHh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN--------INRIIHQL  106 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  106 (433)
                      ++++++|+|+|+|||||||+++.|++.+|+.+++.|.+.....  .   +....   ...+++.        +...+...
T Consensus         2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~--~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   73 (193)
T 2rhm_A            2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMF--D---GLGWS---DREWSRRVGATAIMMLYHTAATI   73 (193)
T ss_dssp             CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--H---HHCCC---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHH--H---hcCcc---chHHHHHhhHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999999998753211  0   11111   1122222        22334445


Q ss_pred             hhCCCcEEEEcCcccHHH-HHH--HHhcC-C-eEEEEEEcCHHHHHHHHHHhhC---CCCC---HHhHH-----HHHhhc
Q psy16778        107 NVDNLTGVLVCSALRRNY-RDI--IRNNN-R-VVFIYLKAEFGVILSRLQKRAE---HFMP---ADLLE-----SQFQTL  170 (433)
Q Consensus       107 ~~~~~~~Vi~~~~~~~~~-~~~--l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~---~~~~---~~~l~-----~~~~~~  170 (433)
                      +..|.++|++........ +.+  +.... . ..+|||++|++++.+|+.+|..   ++..   .+.+.     ..++.+
T Consensus        74 l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~  153 (193)
T 2rhm_A           74 LQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDI  153 (193)
T ss_dssp             HHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCC
T ss_pred             HhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcC
Confidence            567778888876522211 122  33332 2 6899999999999999988863   2211   11111     222223


Q ss_pred             cCCCCCCCCCeEEEccCCC----HHHHHHHHhcC
Q psy16778        171 EEPDPLVEPDVRTVSVNEP----LEGIVSKSAIM  200 (433)
Q Consensus       171 ~~~~~~~~~~~~~Id~~~~----~ee~~~~i~~~  200 (433)
                      ++++  .+.++++||++..    .+++.+.|...
T Consensus       154 ~~~~--~~~~~~~Idt~~~~~~~~~~i~~~i~~~  185 (193)
T 2rhm_A          154 PPLP--LGGPLLTVDTTFPEQIDMNAIVQWVRQH  185 (193)
T ss_dssp             CCCC--CCSCEEEEECSSGGGCCHHHHHHHHHHH
T ss_pred             CCcc--CCCCEEEEeCCCCcccCHHHHHHHHHHH
Confidence            3332  2357899999853    45555555443

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.54  E-value=5.5e-15  Score=134.79  Aligned_cols=169  Identities=17%  Similarity=0.144  Sum_probs=109.1

Q ss_pred             CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccccc----------ccCCCCCCcCChhHHHHHH
Q psy16778         31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKM----------SAKQPLNDEDRRPWLNNIN  100 (433)
Q Consensus        31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  100 (433)
                      .+...+++++|+|+|+|||||||+++.|++++|+++|+++++.+.......          ..|....   .......+.
T Consensus        22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVp---de~~~~lv~   98 (217)
T 3umf_A           22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVP---LEVVLALLK   98 (217)
T ss_dssp             --CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCC---HHHHHHHHH
T ss_pred             cchhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCC---HHHHHHHHH
Confidence            344567889999999999999999999999999999999988754211111          1111111   011223334


Q ss_pred             HHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCC----CHHhHHHHHhhccC--
Q psy16778        101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFM----PADLLESQFQTLEE--  172 (433)
Q Consensus       101 ~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~----~~~~l~~~~~~~~~--  172 (433)
                      +.+........++|+++.+.+....+.+.+...  ..+|+|+++.+++.+|+..|.....    ..+.+..+++.|.+  
T Consensus        99 ~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t  178 (217)
T 3umf_A           99 EAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELT  178 (217)
T ss_dssp             HHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHH
Confidence            444444445567899988877777776765433  6899999999999999988853221    13344444433322  


Q ss_pred             -----CCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        173 -----PDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       173 -----~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                           .|. .....+.||.+.+++++.++|.+.+.+
T Consensus       179 ~pl~~~Y~-~~~~l~~Idg~~~~eeV~~~I~~~l~k  213 (217)
T 3umf_A          179 KPVIEHYK-QQNKVITIDASGTVDAIFDKVNHELQK  213 (217)
T ss_dssp             HHHHHHHH-TTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHH-hcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence                 111 223457888889999999998876644

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.54  E-value=5.5e-14  Score=124.55  Aligned_cols=161  Identities=14%  Similarity=0.182  Sum_probs=95.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE-eCCCCCccccccc-cccC-CCCCCcCChhHHHHHHHHHHHhhhC-CC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFI-DGDHLHPQSNIDK-MSAK-QPLNDEDRRPWLNNINRIIHQLNVD-NL  111 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~i-d~D~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~  111 (433)
                      .++++|+|+|++||||||+++.|++.+|..++ +.+..-.  .... ...+ ..|..  ...+.+.+.+.+...+.. +.
T Consensus         3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~--~i~~~~~~g~~~~~~--~~~~~~~~~~~i~~~l~~~g~   78 (183)
T 2vli_A            3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQ--ALRKLTPGFSGDPQE--HPMWIPLMLDALQYASREAAG   78 (183)
T ss_dssp             --CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHH--HHHHTSTTCCSCGGG--STTHHHHHHHHHHHHHHHCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHH--HHHHhCccccchhhh--hHHHHHHHHHHHHHHHHhCCC
Confidence            35789999999999999999999999999988 4221100  0000 0001 01111  122223334445555544 55


Q ss_pred             cEEEEcCcccH----HHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEcc
Q psy16778        112 TGVLVCSALRR----NYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSV  186 (433)
Q Consensus       112 ~~Vi~~~~~~~----~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~  186 (433)
                      .+|++.+....    ..++.+++.+. ...|||++|++++.+|+.+|..++...+.+...+..++.+ .   .+. +||+
T Consensus        79 ~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~~~~~~~~~~~~~~~-~---~~~-~Id~  153 (183)
T 2vli_A           79 PLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVNVGTVEDRLNELRGE-Q---FQT-HIDT  153 (183)
T ss_dssp             CEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----CCHHHHHHHHHHHTSG-G---GCS-EEEC
T ss_pred             cEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccchhHHHHHHHHHhhccc-c---cce-EeeC
Confidence            67777655333    34455655432 4569999999999999998865444455666666666554 2   244 8999


Q ss_pred             C-CCHHHHHHHHhcCCCCCC
Q psy16778        187 N-EPLEGIVSKSAIMPPTRA  205 (433)
Q Consensus       187 ~-~~~ee~~~~i~~~l~~~~  205 (433)
                      + .+++++.++|.+.+....
T Consensus       154 ~~~~~~~~~~~I~~~l~~~~  173 (183)
T 2vli_A          154 AGLGTQQVAEQIAAQVGLTL  173 (183)
T ss_dssp             TTCCHHHHHHHHHHHHTCCC
T ss_pred             CCCCHHHHHHHHHHHHHHhc
Confidence            8 899999999988876543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.53  E-value=7.5e-15  Score=129.67  Aligned_cols=158  Identities=14%  Similarity=0.129  Sum_probs=92.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH-HhCCeEEeCCCCCccccccccccC--CCCCCcCChhHHHHHHHHHHHhh---hCCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLAT-RLGVKFIDGDHLHPQSNIDKMSAK--QPLNDEDRRPWLNNINRIIHQLN---VDNL  111 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~-~lg~~~id~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~  111 (433)
                      +.+|+|+|+|||||||+++.|++ .+|+.++++|.+.....  ....+  ..+...........+...+...+   ..+.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~   79 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM--AHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVK   79 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHT--TSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhh--CCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCC
Confidence            57899999999999999999999 68999999987653211  10011  11221111112223445566666   6777


Q ss_pred             cEEEEcCcccHHHHHHHH----hcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEcc
Q psy16778        112 TGVLVCSALRRNYRDIIR----NNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSV  186 (433)
Q Consensus       112 ~~Vi~~~~~~~~~~~~l~----~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~  186 (433)
                      .+|+++......+++.+.    ..+. ..+|||++|++++.+|+.+|..+..+.+.+..++..++++.. .  ..+++|.
T Consensus        80 ~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~-~--~~~~id~  156 (181)
T 1ly1_A           80 GVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLG-L--PVYNGTP  156 (181)
T ss_dssp             EEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGCCCHHHHHHHHHHHHHHHT-C--CCC----
T ss_pred             eEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCCCCHHHHHHHHHHhhccCC-C--CccccCC
Confidence            888887776555554443    2222 479999999999999999987555666777777777666532 1  2345665


Q ss_pred             CCCHHHHHHHHhcCC
Q psy16778        187 NEPLEGIVSKSAIMP  201 (433)
Q Consensus       187 ~~~~ee~~~~i~~~l  201 (433)
                      +. ++++...+...+
T Consensus       157 ~~-~~~v~~~i~~~l  170 (181)
T 1ly1_A          157 GK-PKAVIFDVDGTL  170 (181)
T ss_dssp             ---------------
T ss_pred             CC-Cceeeehhhhhh
Confidence            54 266666565544

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.51  E-value=4.3e-14  Score=123.87  Aligned_cols=156  Identities=13%  Similarity=0.062  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHH---------HHHHHHHHhh--
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN---------NINRIIHQLN--  107 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~--  107 (433)
                      ++|+|+|++||||||+++.| +.+|+.+++.|++.......   .+.....  ......         .....+...+  
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~   75 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSI---EAKPGER--LMDFAKRLREIYGDGVVARLCVEELGT   75 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHH---HC---CC--HHHHHHHHHHHHCTTHHHHHHHHHHCS
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHh---cCCChhH--HHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence            68999999999999999999 88999999988776432111   1111110  001111         1222333334  


Q ss_pred             hCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCC--CCHHhHHHHHhh--ccCCCCCCCCCe
Q psy16778        108 VDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHF--MPADLLESQFQT--LEEPDPLVEPDV  181 (433)
Q Consensus       108 ~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~--~~~~~l~~~~~~--~~~~~~~~~~~~  181 (433)
                      ..+..+|+++. .....++.+.+...  +.+|||++|++++.+|+.+|+...  ...+.+...+..  ......+...++
T Consensus        76 ~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ad  154 (179)
T 3lw7_A           76 SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMAD  154 (179)
T ss_dssp             CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHTCS
T ss_pred             cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHhCC
Confidence            45556777665 66667677766532  689999999999999999986421  223333332211  111000122377


Q ss_pred             EEEccCCCHHHHHHHHhcCC
Q psy16778        182 RTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       182 ~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ++|+++.+++++.++|.+.+
T Consensus       155 ~vId~~~~~~~~~~~i~~~l  174 (179)
T 3lw7_A          155 YIITNDSNYEEFKRRCEEVT  174 (179)
T ss_dssp             EEEECCSCHHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHH
Confidence            99998899999998887643

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.50  E-value=5e-14  Score=127.13  Aligned_cols=168  Identities=13%  Similarity=0.129  Sum_probs=99.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhh---
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLN---  107 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---  107 (433)
                      ...++++|+|+|++||||||+++.|++.+|++++++|++.+.........+..+..   .....+.......+...+   
T Consensus        16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~   95 (201)
T 2cdn_A           16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNP   95 (201)
T ss_dssp             CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSG
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcc
Confidence            45677899999999999999999999999999999988753310000000000000   000000011112222211   


Q ss_pred             hCCCcEEEEcCcccHHHH----HHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhcc----CCCCCC
Q psy16778        108 VDNLTGVLVCSALRRNYR----DIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLE----EPDPLV  177 (433)
Q Consensus       108 ~~~~~~Vi~~~~~~~~~~----~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~----~~~~~~  177 (433)
                      ..+.++|+++........    +.+.+.+.  ..+|||++|++++.+|+.+|+......+.+...+..+.    +...+.
T Consensus        96 ~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~~~~~  175 (201)
T 2cdn_A           96 DAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYY  175 (201)
T ss_dssp             GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHT
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHHHHHHh
Confidence            235578888755443333    33443222  58999999999999999998532223444433332222    111001


Q ss_pred             CCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        178 EPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       178 ~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ....++||++.+++++.++|.+.+
T Consensus       176 ~~~~~~Id~~~~~eev~~~I~~~l  199 (201)
T 2cdn_A          176 RDQLKTVDAVGTMDEVFARALRAL  199 (201)
T ss_dssp             TTTEEEEECCSCHHHHHHHHHHHT
T ss_pred             cCcEEEEeCCCCHHHHHHHHHHHH
Confidence            336789999899999999987765

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.50  E-value=7e-15  Score=133.31  Aligned_cols=164  Identities=12%  Similarity=0.161  Sum_probs=104.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      |+|+|+|+|||||+|+++.|++++|++||+++++.+.........|...+.   .+...--+.+..++...+.+..++|+
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~il   80 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVIF   80 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceEe
Confidence            689999999999999999999999999999998875422111111100000   00000012334445555556668999


Q ss_pred             EcCcccHHHHHHHH----hcC-C-eEEEEEEcCHHHHHHHHHHhhCCC------------------------CCHHhHHH
Q psy16778        116 VCSALRRNYRDIIR----NNN-R-VVFIYLKAEFGVILSRLQKRAEHF------------------------MPADLLES  165 (433)
Q Consensus       116 ~~~~~~~~~~~~l~----~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~------------------------~~~~~l~~  165 (433)
                      |+.+.+....+.|.    +.. . ..|++|++|.+++.+|+..|.-.+                        ...+.++.
T Consensus        81 DGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD~~e~i~~  160 (206)
T 3sr0_A           81 DGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDDKPEVIKK  160 (206)
T ss_dssp             ESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGGSHHHHHH
T ss_pred             cCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCCCHHHHHH
Confidence            98887766655553    222 2 689999999999999999885211                        12344555


Q ss_pred             HHhhccCCCC-----C-CCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        166 QFQTLEEPDP-----L-VEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       166 ~~~~~~~~~~-----~-~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      +++.|++-..     | +..-...||.+.+++++.++|.+.+.
T Consensus       161 Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~  203 (206)
T 3sr0_A          161 RLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG  203 (206)
T ss_dssp             HHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence            5444432110     1 22245778888999999999987654

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=99.50  E-value=6.5e-16  Score=154.14  Aligned_cols=182  Identities=11%  Similarity=0.086  Sum_probs=126.6

Q ss_pred             cccccchhh-hhHHhhhcceeecc-cccCCCCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEE
Q psy16778        209 YSDFVCVDD-FEQFALKVLRIRPR-VMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYIL  286 (433)
Q Consensus       209 ~~d~~~~~~-~~~~a~~~~~l~pr-~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~  286 (433)
                      |.+....++ .|..+|++|.|+|+ ++++++++|++|+++|.+++.||++||++  ++.||    .+++++.++|.++++
T Consensus        23 ~~~~~~~~~~~~~~~fd~v~l~p~~~~~~~~~vdlst~l~g~~l~~Pii~Apm~--g~~~~----~~a~a~a~~G~~gvl   96 (393)
T 2qr6_A           23 HVEIGIGREARRTYSLDDISVVSSRRTRSSKDVDTTWHIDAYKFDLPFMNHPSD--ALASP----EFVIEMGKQGGLGVI   96 (393)
T ss_dssp             EEEEETTEEEECCCCGGGEEECCCSCCCCGGGCBCCEEETTEEESSSEEECCCT--TTCCH----HHHHHHHHTTSBCEE
T ss_pred             HHhcccccccccCCChhhEEEccCCCCCChhHCCceeEEcccccCCCeEeCCCC--CcccH----HHHHHHHHcCCcEEE
Confidence            333333333 35678999999998 99999999999999999999999999998  67777    589999999999999


Q ss_pred             ec--------CCCCCHHHHHHhCCC------CcceEEEeecc-CHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccc
Q psy16778        287 ST--------ISTTSIEELAEKTPQ------TTKWFQLYIYR-DREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIR  351 (433)
Q Consensus       287 s~--------~s~~~~eeva~~~~~------~~~w~qly~~~-d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~  351 (433)
                      ++        .++.++|++++....      .+.|+|+|..+ |++.+.+++++++++|++.++..     .+.+..+.+
T Consensus        97 ~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~~~~~i~~~~~~g~~v~~~v-----~~~~~~e~a  171 (393)
T 2qr6_A           97 NAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVAVRV-----SPQNVREIA  171 (393)
T ss_dssp             ETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCCEEEE-----CTTTHHHHH
T ss_pred             EecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHHHHHHHHHHhhcCCeEEEEe-----CCccHHHHH
Confidence            98        556778888765321      45799999766 99999999999999999887721     122221111


Q ss_pred             c-----ccC---C---C-------ccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778        352 N-----KFN---M---P-------SHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       352 ~-----~~~---~---~-------~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT  405 (433)
                      .     +..   +   +       +..+.++|.....    ...+++..++..+.+.++++.++|+++|+|+
T Consensus       172 ~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~----~~~~pvi~ggi~t~e~a~~~~~~Gad~i~vg  239 (393)
T 2qr6_A          172 PIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIG----SLDVPVIAGGVNDYTTALHMMRTGAVGIIVG  239 (393)
T ss_dssp             HHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHH----HCSSCEEEECCCSHHHHHHHHTTTCSEEEES
T ss_pred             HHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHH----hcCCCEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence            1     000   0   0       0001222211100    0012233345677889999999999999994

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.49  E-value=5.2e-14  Score=125.38  Aligned_cols=161  Identities=22%  Similarity=0.237  Sum_probs=93.0

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778         32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQL  106 (433)
Q Consensus        32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (433)
                      .+...++++|+|+|++||||||+++.|++.++     +.++++|.+...     +..+..+........+..+......+
T Consensus         7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~-----~~~~~~~~~~~r~~~~~~~~~~~~~~   81 (186)
T 2yvu_A            7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTT-----VSEGAGFTREERLRHLKRIAWIARLL   81 (186)
T ss_dssp             -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTT-----TTTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHH-----HhhccCCChhhHHHHHHHHHHHHHHH
Confidence            44566889999999999999999999999884     467888776322     11122232222222233332333333


Q ss_pred             hhCCCcEEEEcCcccHHHH----HHHHhcCC-eEEEEEEcCHHHHHHHHHHhh---CCCCCHHhHHHHHhhccCCCCCCC
Q psy16778        107 NVDNLTGVLVCSALRRNYR----DIIRNNNR-VVFIYLKAEFGVILSRLQKRA---EHFMPADLLESQFQTLEEPDPLVE  178 (433)
Q Consensus       107 ~~~~~~~Vi~~~~~~~~~~----~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~---~~~~~~~~l~~~~~~~~~~~~~~~  178 (433)
                      ...+..+|++........+    +.+..... +.+|||++|++++.+|+..+.   ........+......++++    .
T Consensus        82 ~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~y~~~----~  157 (186)
T 2yvu_A           82 ARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDPYEPP----E  157 (186)
T ss_dssp             HTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSCCCCC----S
T ss_pred             HhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhcccCC----C
Confidence            4556555556554333333    33433222 689999999999999974321   0000000111111112221    2


Q ss_pred             CCeEEEccC-CCHHHHHHHHhcCC
Q psy16778        179 PDVRTVSVN-EPLEGIVSKSAIMP  201 (433)
Q Consensus       179 ~~~~~Id~~-~~~ee~~~~i~~~l  201 (433)
                      .++++||++ .+++++.+.|...+
T Consensus       158 ~~~~~Id~~~~~~~ev~~~I~~~l  181 (186)
T 2yvu_A          158 NPQLVLDTESNTIEHNVSYLYSLV  181 (186)
T ss_dssp             SCSEEEETTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCHHHHHHHHHHHH
Confidence            367999998 89999999887654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.48  E-value=1.2e-13  Score=123.57  Aligned_cols=163  Identities=15%  Similarity=0.175  Sum_probs=100.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc----------cccCCCCCCcCChhHHHHHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK----------MSAKQPLNDEDRRPWLNNINRIIH  104 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  104 (433)
                      +.++++|+|+|++||||||+++.|++.+|+.+++.|++........          ...|....   .......+...+.
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~---~~~~~~~~~~~i~   82 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVP---LETVLDMLRDAMV   82 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCC---HHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999998754311000          00111110   1112233444555


Q ss_pred             HhhhCCCcEEEEcCcccHHHHHHHHhc-CC-eEEEEEEcCHHHHHHHHHHhhCC---C-CCHHhHHHH----HhhccCC-
Q psy16778        105 QLNVDNLTGVLVCSALRRNYRDIIRNN-NR-VVFIYLKAEFGVILSRLQKRAEH---F-MPADLLESQ----FQTLEEP-  173 (433)
Q Consensus       105 ~~~~~~~~~Vi~~~~~~~~~~~~l~~~-~~-~~vv~L~~~~e~l~~Rl~~R~~~---~-~~~~~l~~~----~~~~~~~-  173 (433)
                      .....+..+|+++.+....+.+.+... .. ..+|||++|++++.+|+.+|+..   . ...+.+...    +....+. 
T Consensus        83 ~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  162 (196)
T 2c95_A           83 AKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVI  162 (196)
T ss_dssp             HHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHH
T ss_pred             hccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            555567788888755554454444332 12 68999999999999999988631   1 112222222    2221111 


Q ss_pred             --CCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        174 --DPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       174 --~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                        +. .....++||++.+++++.++|.+.+
T Consensus       163 ~~~~-~~~~~~~Id~~~~~e~v~~~i~~~l  191 (196)
T 2c95_A          163 AFYE-KRGIVRKVNAEGSVDSVFSQVCTHL  191 (196)
T ss_dssp             HHHH-HHTCEEEEECCSCHHHHHHHHHHHH
T ss_pred             HHHH-hcCcEEEEECCCCHHHHHHHHHHHH
Confidence              10 1112357888899999999887654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.46  E-value=3.3e-13  Score=121.08  Aligned_cols=161  Identities=12%  Similarity=0.108  Sum_probs=100.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------c---c-cccCCCCCCcCChhHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------D---K-MSAKQPLNDEDRRPWLNNINRIIHQ  105 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~---~-~~~~~~~~~~~~~~~~~~~~~~~~~  105 (433)
                      +++++|+|+|++||||||+++.|++++|+.+++.|++......      .   . ...|....   .......+...+..
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~---~~~~~~~~~~~i~~   86 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVP---SGIVLELLKEAMVA   86 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCC---HHHHHHHHHHHHhc
Confidence            4568999999999999999999999999999999987543210      0   0 00111111   11122233444444


Q ss_pred             hhhCCCcEEEEcCcccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCCCCC----HHhHHH----HHhhccC---
Q psy16778        106 LNVDNLTGVLVCSALRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRAEHFMP----ADLLES----QFQTLEE---  172 (433)
Q Consensus       106 ~~~~~~~~Vi~~~~~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~~----~~~l~~----~~~~~~~---  172 (433)
                      ....+..+|+++.......++.+.+.. . ..+|||++|++++.+|+.+|......    .+.+..    ++....+   
T Consensus        87 ~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  166 (199)
T 2bwj_A           87 SLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIA  166 (199)
T ss_dssp             HTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            444677788887665555555554422 2 58999999999999999998642111    112222    2222211   


Q ss_pred             CCCCCCCCe-EEEccCCCHHHHHHHHhcCC
Q psy16778        173 PDPLVEPDV-RTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       173 ~~~~~~~~~-~~Id~~~~~ee~~~~i~~~l  201 (433)
                      .+  .+.+. ++||++.+++++.++|.+.+
T Consensus       167 ~~--~~~~~~~~id~~~~~e~v~~~i~~~l  194 (199)
T 2bwj_A          167 YY--ETKTQLHKINAEGTPEDVFLQLCTAI  194 (199)
T ss_dssp             HH--HHHSEEEEEETTSCHHHHHHHHHHHH
T ss_pred             HH--HhcCCEEEEECCCCHHHHHHHHHHHH
Confidence            11  11233 78888899999999887654

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.45  E-value=9e-13  Score=118.87  Aligned_cols=166  Identities=14%  Similarity=0.137  Sum_probs=100.1

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc-cc----------cccCCCCCCcCChhHHHHHH
Q psy16778         32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI-DK----------MSAKQPLNDEDRRPWLNNIN  100 (433)
Q Consensus        32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~  100 (433)
                      .+...++++|+|+|++||||||+++.|++.+|+.+++.|++.+.... ..          +..|...   ........+.
T Consensus         9 ~~~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~---~~~~~~~~l~   85 (203)
T 1ukz_A            9 AFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIV---PQEITLALLR   85 (203)
T ss_dssp             CSCTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCC---CHHHHHHHHH
T ss_pred             CCCCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcC---CHHHHHHHHH
Confidence            34456678999999999999999999999999999999977532100 00          0011100   0011222344


Q ss_pred             HHHHHhhhCC-CcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhC---CC-CCHHhHHHHHhhccC-
Q psy16778        101 RIIHQLNVDN-LTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAE---HF-MPADLLESQFQTLEE-  172 (433)
Q Consensus       101 ~~~~~~~~~~-~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~---~~-~~~~~l~~~~~~~~~-  172 (433)
                      +.+...+..| ..+|+++.+........+.+...  ..+|||++|++++.+|+.+|..   .. ...+.+...+..+.. 
T Consensus        86 ~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~  165 (203)
T 1ukz_A           86 NAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKET  165 (203)
T ss_dssp             HHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHT
T ss_pred             HHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHh
Confidence            4455555555 46777766544444444443222  6899999999999999988852   21 223333333222111 


Q ss_pred             ---C---CCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        173 ---P---DPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       173 ---~---~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                         .   +. .....++|+++.+++++.++|.+.+
T Consensus       166 ~~~~~~~~~-~~~~vi~id~~~~~e~v~~~i~~~l  199 (203)
T 1ukz_A          166 SMPVIEYFE-TKSKVVRVRCDRSVEDVYKDVQDAI  199 (203)
T ss_dssp             THHHHHHHH-TTTCEEEEECSSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHH-hcCcEEEEECCCCHHHHHHHHHHHH
Confidence               0   00 1113456888899999999887643

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.45  E-value=1.2e-13  Score=123.42  Aligned_cols=160  Identities=12%  Similarity=0.173  Sum_probs=93.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccc----------c-cccCCCCCCcCChhHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNID----------K-MSAKQPLNDEDRRPWLNNINRIIHQ  105 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~  105 (433)
                      ++++|+|+|++||||||+++.|++.+|+++++.|++.......          . +..|.....   ......+...+..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~l~~~~~~   78 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPV---EITISLLKREMDQ   78 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCH---HHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCH---HHHHHHHHHHHHh
Confidence            4689999999999999999999999999999999875321100          0 001111110   0011111222222


Q ss_pred             h---hhCCCcEEEEcCcccHHHHHHHHh----cCC-eEEEEEEcCHHHHHHHHHHhhC---CCC-CHHhHHHHHh----h
Q psy16778        106 L---NVDNLTGVLVCSALRRNYRDIIRN----NNR-VVFIYLKAEFGVILSRLQKRAE---HFM-PADLLESQFQ----T  169 (433)
Q Consensus       106 ~---~~~~~~~Vi~~~~~~~~~~~~l~~----~~~-~~vv~L~~~~e~l~~Rl~~R~~---~~~-~~~~l~~~~~----~  169 (433)
                      .   ...+..+|+++........+.+.+    ... ..+|||++|++++.+|+.+|..   ++. ..+.+...+.    .
T Consensus        79 ~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~  158 (196)
T 1tev_A           79 TMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQS  158 (196)
T ss_dssp             HHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHH
T ss_pred             hhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHh
Confidence            1   224567787866655443332222    111 5799999999999999988852   222 2333322222    2


Q ss_pred             ccC---CCCCCCC-CeEEEccCCCHHHHHHHHhcCC
Q psy16778        170 LEE---PDPLVEP-DVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       170 ~~~---~~~~~~~-~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ..+   .|  .+. ..++||++.+++++.++|.+.+
T Consensus       159 ~~~~~~~y--~~~~~~~~id~~~~~~~v~~~i~~~l  192 (196)
T 1tev_A          159 TKPIIDLY--EEMGKVKKIDASKSVDEVFDEVVQIF  192 (196)
T ss_dssp             HHHHHHHH--HHTTCEEEEETTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HhcCCEEEEECCCCHHHHHHHHHHHH
Confidence            111   11  112 3358999999999999887654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.45  E-value=4.7e-14  Score=125.41  Aligned_cols=161  Identities=10%  Similarity=0.102  Sum_probs=94.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCC----CCCCcCChhHHHHHHHHHHHhhhCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQ----PLNDEDRRPWLNNINRIIHQLNVDNL  111 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (433)
                      .+|++|+|+|++||||||+++.|++.+|+.++++|++...........+.    .+.. ........+...+...+.+  
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~l~~--   78 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMER-GDLVPDDLILELIREELAE--   78 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHCCS--
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHhcC--
Confidence            46789999999999999999999999999999998775421000000000    0000 0000111222334444433  


Q ss_pred             cEEEEcCcccHHHHH----HHHhcCC--eEEEEEEcCHHHHHHHHHHhh---CCC-CCHHhHHHHHhhcc-------CCC
Q psy16778        112 TGVLVCSALRRNYRD----IIRNNNR--VVFIYLKAEFGVILSRLQKRA---EHF-MPADLLESQFQTLE-------EPD  174 (433)
Q Consensus       112 ~~Vi~~~~~~~~~~~----~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~---~~~-~~~~~l~~~~~~~~-------~~~  174 (433)
                      ++|+++.........    .+.+.+.  ..+|||++|++++.+|+.+|.   +++ ...+.+...+..+.       +.+
T Consensus        79 ~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~~  158 (186)
T 3cm0_A           79 RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYY  158 (186)
T ss_dssp             EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            377776554433332    3443221  579999999999999999885   333 23333332222211       111


Q ss_pred             CCCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778        175 PLVEPDVRTVSVNEPLEGIVSKSAIM  200 (433)
Q Consensus       175 ~~~~~~~~~Id~~~~~ee~~~~i~~~  200 (433)
                      . .....++||++.+++++.++|.+.
T Consensus       159 ~-~~~~~~~id~~~~~~~v~~~i~~~  183 (186)
T 3cm0_A          159 E-ARGVLKRVDGLGTPDEVYARIRAA  183 (186)
T ss_dssp             H-HTTCEEEEECCSCHHHHHHHHHHH
T ss_pred             H-hcCcEEEEECCCCHHHHHHHHHHH
Confidence            0 111368899889999999988754

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=99.45  E-value=2.7e-14  Score=141.47  Aligned_cols=140  Identities=35%  Similarity=0.506  Sum_probs=111.5

Q ss_pred             CCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc------------
Q psy16778        289 ISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD------------  349 (433)
Q Consensus       289 ~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~------------  349 (433)
                      .+..++|+.|+...+...|-|+....++|.+...++.+... .+..-++      ++.+.++|.+...            
T Consensus        28 ~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~~f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPmg~~~l  107 (392)
T 2nzl_A           28 ICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRM  107 (392)
T ss_dssp             CSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHHHHHSCBCCCCSSCCTTCBCCEEETTEEESSSEEECCCSCGGG
T ss_pred             CCHHHHHHHHHhhCCHHHHhhcCCCCCccHHHHHHHHhhheEEeehhhccCCcCCCcceEECCEecCCceEecccccccc
Confidence            35668888888877778899999999999999888888655 5555544      2336667765431            


Q ss_pred             -----------cccccCC------CccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCC
Q psy16778        350 -----------IRNKFNM------PSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFG  412 (433)
Q Consensus       350 -----------~~~~~~~------~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g  412 (433)
                                 .+..+++      ..+.++|++.+..++.+.|||||+++|+..+.++++||+++|+++|+||+|+|+.|
T Consensus       108 ~~~~~e~~laraA~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g  187 (392)
T 2nzl_A          108 AHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLG  187 (392)
T ss_dssp             TSTTHHHHHHHHHHHHTCEEEECTTCSSCHHHHHHHCTTSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCC
T ss_pred             ccchHHHHHHHHHHHcCCCeeccchHHHHHHHHHHhcCCCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCcc
Confidence                       1111111      13457999988766678899999999999999999999999999999999999999


Q ss_pred             CchhhhhcCCCCCCCC
Q psy16778        413 TRYADIRNKFNMPSHL  428 (433)
Q Consensus       413 ~r~~~~r~~~~~~~~~  428 (433)
                      +|++|.|++|.+|+++
T Consensus       188 ~R~~d~r~~~~lp~~~  203 (392)
T 2nzl_A          188 NRLDDVRNRFKLPPQL  203 (392)
T ss_dssp             CCHHHHHHTCCCCTTC
T ss_pred             chhHhHhhccCCcccc
Confidence            9999999999999877

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.45  E-value=1.1e-13  Score=126.48  Aligned_cols=118  Identities=14%  Similarity=0.108  Sum_probs=71.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhh---hCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLN---VDN  110 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~  110 (433)
                      +++.|+|+|++||||||+++.|++.+|+.++++|++.+.........|.....   .......+.+...+...+   ..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~   83 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCV   83 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccC
Confidence            45789999999999999999999999999999998764321000000100000   000000112222333322   236


Q ss_pred             CcEEEEcCcccHHHHHH----HHhcC-C-eEEEEEEcCHHHHHHHHHHhh
Q psy16778        111 LTGVLVCSALRRNYRDI----IRNNN-R-VVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus       111 ~~~Vi~~~~~~~~~~~~----l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      .++|+++.+......+.    +...+ . ..+|||+++++++.+|+..|.
T Consensus        84 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  133 (217)
T 3be4_A           84 NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC  133 (217)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            67888865544333333    32322 2 589999999999999999885

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.44  E-value=4.6e-13  Score=121.85  Aligned_cols=157  Identities=20%  Similarity=0.222  Sum_probs=97.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhC------CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLG------VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg------~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (433)
                      ...+|++|+|+|++||||||+++.|++.++      +.++++|.+....     ..+..+.......+++.+...+...+
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l-----~~~~~~~~~~r~~~~~~~~~~~~~~l   95 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL-----NKDLGFSEADRNENIRRIAEVAKLFA   95 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT-----TTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhh-----ccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999999999886      7888887765321     11222332333444555555555666


Q ss_pred             hCCCcEEEEcCcccHHHHHHHHhc----------CC-eEEEEEEcCHHHHHHHH------HHhhCCCCCHHhHHHHHhhc
Q psy16778        108 VDNLTGVLVCSALRRNYRDIIRNN----------NR-VVFIYLKAEFGVILSRL------QKRAEHFMPADLLESQFQTL  170 (433)
Q Consensus       108 ~~~~~~Vi~~~~~~~~~~~~l~~~----------~~-~~vv~L~~~~e~l~~Rl------~~R~~~~~~~~~l~~~~~~~  170 (433)
                      ..+..+|+++......+++.+.+.          .. +.+|||++|++++.+|+      ..|.+..       ..+..+
T Consensus        96 ~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~-------~~~~~~  168 (211)
T 1m7g_A           96 DSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVI-------KEFTGI  168 (211)
T ss_dssp             HTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSS-------SSCBTT
T ss_pred             HCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcch-------hhhhhh
Confidence            677777777443223444444431          11 68999999999999994      1111110       001111


Q ss_pred             cCCCCCCCCCeEEEccCC-CHHHHHHHHhcCCC
Q psy16778        171 EEPDPLVEPDVRTVSVNE-PLEGIVSKSAIMPP  202 (433)
Q Consensus       171 ~~~~~~~~~~~~~Id~~~-~~ee~~~~i~~~l~  202 (433)
                      ...|...+.++++||++. +++++.+.|.+.+.
T Consensus       169 ~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~  201 (211)
T 1m7g_A          169 SAPYEAPANPEVHVKNYELPVQDAVKQIIDYLD  201 (211)
T ss_dssp             TBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHH
T ss_pred             hhhccCCCCCeEEEECCCCCHHHHHHHHHHHHH
Confidence            112210123569999995 99999999877653

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.43  E-value=1e-13  Score=123.62  Aligned_cols=165  Identities=13%  Similarity=0.118  Sum_probs=93.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC----CCCcCChhHHHHHHHHHHHhhh--C
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP----LNDEDRRPWLNNINRIIHQLNV--D  109 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~  109 (433)
                      +++++|+|+|++||||||+++.|++.+|+.+++.|++...........+..    +.. ............+.....  .
T Consensus         4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~i~~~~   82 (194)
T 1qf9_A            4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN-GEIVPSIVTVKLLKNAIDANQ   82 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTST
T ss_pred             CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcC
Confidence            356799999999999999999999999999999988753311000000000    000 000000111122222221  4


Q ss_pred             CCcEEEEcCcccHHHHHHH----HhcCC-eEEEEEEcCHHHHHHHHHHhhCC---CC-CHHhHHHHHhh----ccCCCC-
Q psy16778        110 NLTGVLVCSALRRNYRDII----RNNNR-VVFIYLKAEFGVILSRLQKRAEH---FM-PADLLESQFQT----LEEPDP-  175 (433)
Q Consensus       110 ~~~~Vi~~~~~~~~~~~~l----~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~---~~-~~~~l~~~~~~----~~~~~~-  175 (433)
                      +..+|+++..........+    ..... ..+|||++|++++.+|+.+|...   .. ..+.+...+..    +.+.+. 
T Consensus        83 ~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~  162 (194)
T 1qf9_A           83 GKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDH  162 (194)
T ss_dssp             TCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHH
Confidence            5678888765544443333    22112 57999999999999999988631   11 12333222221    111100 


Q ss_pred             CCCC-CeEEEccCCCHHHHHHHHhcCC
Q psy16778        176 LVEP-DVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       176 ~~~~-~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      +... ..++||++.+++++.++|.+.+
T Consensus       163 ~~~~~~~~~id~~~~~~~~~~~i~~~l  189 (194)
T 1qf9_A          163 YNKFDKVKIIPANRDVNEVYNDVENLF  189 (194)
T ss_dssp             HHHTTCEEEEECSSCHHHHHHHHHHHH
T ss_pred             HHhCCCEEEEECCCCHHHHHHHHHHHH
Confidence            0111 2378888899999999887654

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=99.43  E-value=1.3e-13  Score=134.12  Aligned_cols=159  Identities=13%  Similarity=0.017  Sum_probs=120.8

Q ss_pred             HhhhcceeecccccCCC--CCC--ceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHH
Q psy16778        221 FALKVLRIRPRVMRDLS--KRT--LVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEE  296 (433)
Q Consensus       221 ~a~~~~~l~pr~l~~~~--~~d--~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~ee  296 (433)
                      .+|+++.|+||++.+++  ++|  ++|+|+|.+++.||++||+      |+.+|..+|+|++++|.+++++..  .++|+
T Consensus         8 ~~fddv~l~P~~~~~~~r~~vd~~~~t~l~g~~l~~Pii~ApM------~~vte~~lA~A~a~~Gg~gvi~~~--~s~ee   79 (361)
T 3r2g_A            8 ITFDDVLLVPSYNHHESRRVVETTSTDRLGKLTLNLPVISANM------DTITESNMANFMHSKGAMGALHRF--MTIEE   79 (361)
T ss_dssp             CCGGGEEECCCCCCSCTTCCCCCCEECTTSSCEESSCEEECCS------TTTCSHHHHHHHHHTTCEEBCCSC--SCHHH
T ss_pred             cccceEEEECCCCCCCccccccceeeEEECCEEcCCCEEECCC------CCchHHHHHHHHHHcCCCEEEeCC--CCHHH
Confidence            47899999999999998  755  4559999999999999995      889999999999999999999964  78999


Q ss_pred             HHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCcchhh
Q psy16778        297 LAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWF  376 (433)
Q Consensus       297 va~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~~~w~  376 (433)
                      +++... ...|+|.|...+++.+.+.++++.++|+..|  ++|++. |+...         ....++.|.+..+      
T Consensus        80 ~~~~i~-~~~~~~~~~~g~~~~~~e~~~~a~~aGvdvI--~id~a~-G~~~~---------~~e~I~~ir~~~~------  140 (361)
T 3r2g_A           80 NIQEFK-KCKGPVFVSVGCTENELQRAEALRDAGADFF--CVDVAH-AHAKY---------VGKTLKSLRQLLG------  140 (361)
T ss_dssp             HHHHHH-TCCSCCBEEECSSHHHHHHHHHHHHTTCCEE--EEECSC-CSSHH---------HHHHHHHHHHHHT------
T ss_pred             HHHHHh-hcceEEEEEcCCCHHHHHHHHHHHHcCCCEE--EEeCCC-CCcHh---------HHHHHHHHHHhcC------
Confidence            987653 3469999998888888899999999999944  555543 32110         0001223333221      


Q ss_pred             hhhccCCHHHHHHHHHHHHHcCCcEEEEec
Q psy16778        377 QLYIYRDREITKSLVQRAEKAGYKALVLTV  406 (433)
Q Consensus       377 Qly~~~~~~~~~~~~~ra~~~G~~aivlTv  406 (433)
                      .+.+......+.+.+++++++|+++|+|++
T Consensus       141 ~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~  170 (361)
T 3r2g_A          141 SRCIMAGNVATYAGADYLASCGADIIKAGI  170 (361)
T ss_dssp             TCEEEEEEECSHHHHHHHHHTTCSEEEECC
T ss_pred             CCeEEEcCcCCHHHHHHHHHcCCCEEEEcC
Confidence            233333345688899999999999999964

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.43  E-value=1e-13  Score=123.36  Aligned_cols=154  Identities=17%  Similarity=0.206  Sum_probs=85.0

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHHHH-hCCeEEeCCCCCccccccccccCCCCCCcCC-hhHHHHHHHHHHHhhhC
Q psy16778         32 SGEGSPSTVFVIMGVSGSGKSTIGESLATR-LGVKFIDGDHLHPQSNIDKMSAKQPLNDEDR-RPWLNNINRIIHQLNVD  109 (433)
Q Consensus        32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~-lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  109 (433)
                      +++..++++|+|+|++||||||+++.|++. +|++++|+|++.+...... ..+..+..... ..........+...+..
T Consensus         4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~l~~~~~~   82 (184)
T 1y63_A            4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYT-EYDTELDTHIIEEKDEDRLLDFMEPIMVS   82 (184)
T ss_dssp             --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSC-C------CCCCCHHHHHHHHHHHHHHHTS
T ss_pred             CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhh-hHHHHhhhcccCCCCHHHHHHHHHHHHhc
Confidence            456678899999999999999999999999 7999999998864421110 01111111111 00011111222233323


Q ss_pred             CCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC--HHhHHHH-----HhhccCCCCCCCCCeE
Q psy16778        110 NLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP--ADLLESQ-----FQTLEEPDPLVEPDVR  182 (433)
Q Consensus       110 ~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~~l~~~-----~~~~~~~~~~~~~~~~  182 (433)
                      +.++|++....     ..+.+.....+|||++|++++.+|+.+|+. ..+  ...+..+     +..+.+.|  .  +++
T Consensus        83 ~g~~vi~~~~~-----~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~-~~~~~~~~~~~q~~~~l~~~~~~~y--~--~~~  152 (184)
T 1y63_A           83 RGNHVVDYHSS-----ELFPERWFHMVVVLHTSTEVLFERLTKRQY-SEAKRAENMEAEIQCICEEEARDAY--E--DDI  152 (184)
T ss_dssp             SSEEEEECSCC-----TTSCGGGCSEEEEEECCHHHHHHHHHHTTC-CHHHHHHHHHHHHTTHHHHHHHHHS--C--GGG
T ss_pred             cCCEEEeCchH-----hhhhhccCCEEEEEECCHHHHHHHHHhCCC-ChhhhHhhHHHHHHHHHHHHHHHHh--c--cCc
Confidence            33566664321     111111114799999999999999999852 111  1112122     22223333  2  467


Q ss_pred             EEcc-CCCHHHHHHH
Q psy16778        183 TVSV-NEPLEGIVSK  196 (433)
Q Consensus       183 ~Id~-~~~~ee~~~~  196 (433)
                      +|++ +.+++++..+
T Consensus       153 vi~~n~~~~~~~~~~  167 (184)
T 1y63_A          153 VLVRENDTLEQMAAT  167 (184)
T ss_dssp             EEEEECSSHHHHHHH
T ss_pred             EEECCCCCHHHHHHH
Confidence            8884 4899998333

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=99.42  E-value=1.4e-13  Score=124.39  Aligned_cols=158  Identities=10%  Similarity=0.090  Sum_probs=92.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC---CCCcCCh--------------------
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP---LNDEDRR--------------------   93 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~---~~~~~~~--------------------   93 (433)
                      +.++|+|.|++||||||+++.||++||++++| ++++...   ....|+.   +....+.                    
T Consensus         5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~---a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~   80 (201)
T 3fdi_A            5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEV---AKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQ   80 (201)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHT---TCC---------------------------------C
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHH---HHhcCCCHHHHHHHhhhchhHHHHHhccccccccccH
Confidence            35799999999999999999999999999999 5443211   0111221   1111110                    


Q ss_pred             hHHHHHHHHHHHhhh-CCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC--HHhHHHHH---
Q psy16778         94 PWLNNINRIIHQLNV-DNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP--ADLLESQF---  167 (433)
Q Consensus        94 ~~~~~~~~~~~~~~~-~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~~l~~~~---  167 (433)
                      ..+....+++..+.. ...++||++....    -.+.+....++|||++|++++.+|+.++.+.+..  ...+....   
T Consensus        81 ~~~~~~~~~i~~la~~~~~~~Vi~Gr~g~----~vl~~~~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R  156 (201)
T 3fdi_A           81 DIAIRQFNFIRKKANEEKESFVIVGRCAE----EILSDNPNMISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDKMR  156 (201)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCEEEESTTHH----HHTTTCTTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCCCEEEEECCcc----hhcCCCCCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            011233444445441 3447888764321    1233321158999999999999999887653321  11122111   


Q ss_pred             ----hhc--cCCCCCCCCCeEEEccC-CCHHHHHHHHhcCCCC
Q psy16778        168 ----QTL--EEPDPLVEPDVRTVSVN-EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       168 ----~~~--~~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~~  203 (433)
                          ..+  ..|.. ...++++||++ .+++++++.|...+..
T Consensus       157 ~~~y~~~~~~~~~~-~~~~dl~Idt~~l~~eevv~~I~~~i~~  198 (201)
T 3fdi_A          157 KVYHNFYCESKWGD-SRTYDICIKIGKVDVDTATDMIIKYIDS  198 (201)
T ss_dssp             HHHHHHHCSSCTTB-GGGCSEEEEESSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCC-cccCCEEEECCCCCHHHHHHHHHHHHHH
Confidence                111  11221 34578999998 8999999999876544

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.41  E-value=1e-13  Score=127.07  Aligned_cols=160  Identities=15%  Similarity=0.124  Sum_probs=97.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc----------cccCCCCCCcCChhHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK----------MSAKQPLNDEDRRPWLNNINRIIHQ  105 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  105 (433)
                      .++++|+|+|++||||||+++.|++.+|..++++|++.+......          +..|....   ...+...+.+.+..
T Consensus         3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~---~~~~~~~~~~~~~~   79 (222)
T 1zak_A            3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP---DEIVVNMVKERLRQ   79 (222)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCC---HHHHHHHHHHHHhh
Confidence            356789999999999999999999999999999988764310000          00111110   11122223332221


Q ss_pred             hhhCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCC--------------------------
Q psy16778        106 LNVDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHF--------------------------  157 (433)
Q Consensus       106 ~~~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~--------------------------  157 (433)
                      ....+.++|+++........+.+.+.+.  ..+|||+++++++.+|+..|..++                          
T Consensus        80 ~~~~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~  159 (222)
T 1zak_A           80 PDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRF  159 (222)
T ss_dssp             HHHHHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCT
T ss_pred             ccccCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCC
Confidence            1112346888765544455566665422  689999999999999998774210                          


Q ss_pred             -CCHHhHH----HHHhhccC---CCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        158 -MPADLLE----SQFQTLEE---PDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       158 -~~~~~l~----~~~~~~~~---~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                       ...+.+.    ..+..+.+   .|  . ...++||++.+++++.+.|.+.+
T Consensus       160 ~d~~~~i~~Rl~~~~~~~~~l~~~y--~-~~~~~Id~~~~~~ev~~~I~~~l  208 (222)
T 1zak_A          160 DDTEEKVKLRLETYYQNIESLLSTY--E-NIIVKVQGDATVDAVFAKIDELL  208 (222)
T ss_dssp             TCCTTHHHHHHHHHHHHHHHHHHTT--C-CCEEEEECSSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHH--H-hcEEEEECCCCHHHHHHHHHHHH
Confidence             0122222    22222222   22  2 24788998899999999987654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.40  E-value=2.8e-13  Score=129.93  Aligned_cols=132  Identities=16%  Similarity=0.217  Sum_probs=89.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCCccccccccccCC--CCCCcCChhHH-HHHHHHHHHhh---hCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLHPQSNIDKMSAKQ--PLNDEDRRPWL-NNINRIIHQLN---VDN  110 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~---~~~  110 (433)
                      +++|+|+|+|||||||+++.|++++ |+.++++|.++....  ....|.  .+... ..... ..+...+...+   ..+
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~--~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~g   78 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM--AHEERDEYKYTKK-KEGIVTGMQFDTAKSILYGGDSV   78 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHT--TSCCCC---CCHH-HHHHHHHHHHHHHHHHTTSCTTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhc--cCCcccccccchh-hhhHHHHHHHHHHHHHHhhccCC
Confidence            4789999999999999999999975 999999996643211  111121  11111 11111 22334455556   677


Q ss_pred             CcEEEEcCcccHHHHHHHH----hcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccC
Q psy16778        111 LTGVLVCSALRRNYRDIIR----NNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEE  172 (433)
Q Consensus       111 ~~~Vi~~~~~~~~~~~~l~----~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~  172 (433)
                      ..+|+++......+++.+.    +.+. ..+|||++|++++.+|+.+|..+..+.+.+..+++.+++
T Consensus        79 ~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~e~i~~~~~~~~~  145 (301)
T 1ltq_A           79 KGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMRE  145 (301)
T ss_dssp             CEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGGCCCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHHhc
Confidence            7888888776665555444    2222 579999999999999999998666777777777766654

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.39  E-value=3.1e-13  Score=125.80  Aligned_cols=164  Identities=13%  Similarity=0.133  Sum_probs=97.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCC----CCcCChhHHHHHHHHHHHhhh--
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPL----NDEDRRPWLNNINRIIHQLNV--  108 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--  108 (433)
                      .+++++|+|+|++||||||+++.|++++|+.++++|++.+.........|..+    ......+. ..+...+...+.  
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~-~~~~~~~~~~l~~~  104 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDD-QMVLSLVDEKLKTP  104 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCH-HHHHHHHHHHTTSG
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhcc
Confidence            45789999999999999999999999999999999987643211000000000    00000000 111222333332  


Q ss_pred             -CCCcEEEEcCcccHHHHHHHHh----cCC--eEEEEEEcCHHHHHHHHHHhhCCC------------------------
Q psy16778        109 -DNLTGVLVCSALRRNYRDIIRN----NNR--VVFIYLKAEFGVILSRLQKRAEHF------------------------  157 (433)
Q Consensus       109 -~~~~~Vi~~~~~~~~~~~~l~~----~~~--~~vv~L~~~~e~l~~Rl~~R~~~~------------------------  157 (433)
                       .+.++|+++........+.+.+    ...  ..+++|++|++++.+|+.+|..++                        
T Consensus       105 ~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~  184 (243)
T 3tlx_A          105 QCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE  184 (243)
T ss_dssp             GGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred             cccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccc
Confidence             2567888876555444444332    222  689999999999999999886210                        


Q ss_pred             -------CCHHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778        158 -------MPADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIM  200 (433)
Q Consensus       158 -------~~~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~  200 (433)
                             ...+.+..++..+..       .|. .....+.||.+.+++++...|.+.
T Consensus       185 ~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~-~~~~~~~id~~~~~~~v~~~i~~~  240 (243)
T 3tlx_A          185 PLIQREDDNEDVLKKRLTVFKSETSPLISYYK-NKNLLINLDATQPANDLEKKISQH  240 (243)
T ss_dssp             BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHH-HTTCEEEEETTSCHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEECCCCHHHHHHHHHHH
Confidence                   123344444333322       111 112457788889999999988754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.39  E-value=1.9e-13  Score=124.59  Aligned_cols=162  Identities=11%  Similarity=0.062  Sum_probs=94.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhh---hCCCc
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLN---VDNLT  112 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~  112 (433)
                      |+|+|+|++||||||+++.|++.+|+.+++.|++.+.........+..+..   .........+...+...+   ..+.+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~   80 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG   80 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence            579999999999999999999999999999988764311100000000000   000000011122222222   23567


Q ss_pred             EEEEcCcccHHHHHHHHh----cCC--eEEEEEEcCHHHHHHHHHHhhC-------------------------------
Q psy16778        113 GVLVCSALRRNYRDIIRN----NNR--VVFIYLKAEFGVILSRLQKRAE-------------------------------  155 (433)
Q Consensus       113 ~Vi~~~~~~~~~~~~l~~----~~~--~~vv~L~~~~e~l~~Rl~~R~~-------------------------------  155 (433)
                      +|+++..........+.+    ...  ..+|||++|++++.+|+.+|..                               
T Consensus        81 ~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r  160 (216)
T 3fb4_A           81 FLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQR  160 (216)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccC
Confidence            899876655544444433    221  5899999999999999999820                               


Q ss_pred             CCCCHHhHHHHHhhcc-------CCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        156 HFMPADLLESQFQTLE-------EPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       156 ~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      .....+.+...+..+.       +.+. .....++||++.+++++.++|...+
T Consensus       161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~-~~~~~~~id~~~~~~~v~~~i~~~l  212 (216)
T 3fb4_A          161 IDDKPETVKNRLDVNMKQTQPLLDFYS-QKGVLKDIDGQQDIKKVFVDINDLL  212 (216)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHH-HTTCEEEEECSSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhHHHHHHHHH-cCCcEEEEECCCCHHHHHHHHHHHH
Confidence            0111233333222211       1111 1124688998899999999887654

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.38  E-value=2.3e-13  Score=124.53  Aligned_cols=116  Identities=16%  Similarity=0.163  Sum_probs=71.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc----------cccCCCCCCcCChhHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK----------MSAKQPLNDEDRRPWLNNINRIIHQ  105 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  105 (433)
                      +++++|+|+|++||||||+++.|++.+|+.++++|++.+......          +..|....   .......+.+.+..
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~---~~~~~~~l~~~l~~   78 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS---DDIMVNMIKDELTN   78 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCC---HHHHHHHHHHHHHh
Confidence            356899999999999999999999999999999988764311000          00111110   01111222222221


Q ss_pred             hhhCCCcEEEEcCcccHHHHH----HHHhcCC--eEEEEEEcCHHHHHHHHHHhh
Q psy16778        106 LNVDNLTGVLVCSALRRNYRD----IIRNNNR--VVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus       106 ~~~~~~~~Vi~~~~~~~~~~~----~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      ....+.++|+++........+    .+.+.+.  ..+|||+++++++.+|+..|.
T Consensus        79 ~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~  133 (220)
T 1aky_A           79 NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRL  133 (220)
T ss_dssp             CGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             ccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence            122355788886443333322    2333222  589999999999999998875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.38  E-value=3.6e-13  Score=123.70  Aligned_cols=115  Identities=12%  Similarity=0.058  Sum_probs=72.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC----CCCcCChhHHHHHHHHHHHhhhC--CCc
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP----LNDEDRRPWLNNINRIIHQLNVD--NLT  112 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~  112 (433)
                      ++|+|+|++||||||+++.|++.+|+.++++|++.+.........|..    +.. ........+...+...+..  +..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~g~~   79 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDR-GDLVPDDITIPMVLETLESKGKDG   79 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHc-CCcCcHHHHHHHHHHHHhcccCCe
Confidence            579999999999999999999999999999988754320000000000    000 0000112233344444444  778


Q ss_pred             EEEEcCcccHHHHHHHH----hcC-C-eEEEEEEcCHHHHHHHHHHhh
Q psy16778        113 GVLVCSALRRNYRDIIR----NNN-R-VVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus       113 ~Vi~~~~~~~~~~~~l~----~~~-~-~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      +|+++......+.+.+.    ... . ..+|||++|++++.+|+.+|.
T Consensus        80 vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~  127 (223)
T 2xb4_A           80 WLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR  127 (223)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred             EEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence            88886554433444443    222 2 589999999999999999885

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.37  E-value=5.1e-13  Score=121.78  Aligned_cols=161  Identities=12%  Similarity=0.145  Sum_probs=94.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC----CCCcCChhHHHHHHHHHHHhh---hCCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP----LNDEDRRPWLNNINRIIHQLN---VDNL  111 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~  111 (433)
                      |+|+|+|++||||||+++.|++++|+.++++|++.+.........+..    +......+ ...+...+...+   ..+.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~l~~~~~~~   79 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP-DEVTIGIVKERLGKDDCER   79 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCC-HHHHHHHHHHHHTSGGGTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcccccC
Confidence            579999999999999999999999999999988764311100000000    00000000 011122222222   2366


Q ss_pred             cEEEEcCcccHHHHHHHHh----cCC--eEEEEEEcCHHHHHHHHHHhhC------------------------------
Q psy16778        112 TGVLVCSALRRNYRDIIRN----NNR--VVFIYLKAEFGVILSRLQKRAE------------------------------  155 (433)
Q Consensus       112 ~~Vi~~~~~~~~~~~~l~~----~~~--~~vv~L~~~~e~l~~Rl~~R~~------------------------------  155 (433)
                      ++|+++..........+.+    .+.  ..+|||++|++++.+|+.+|..                              
T Consensus        80 ~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~  159 (216)
T 3dl0_A           80 GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQ  159 (216)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEEC
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccC
Confidence            7899876655544443332    221  5799999999999999999820                              


Q ss_pred             -CCCCHHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        156 -HFMPADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       156 -~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                       .....+.+...+..+..       .|. .....++||++.+++++.++|...+
T Consensus       160 r~~d~~e~i~~rl~~~~~~~~~~~~~~~-~~~~~~~id~~~~~~~v~~~i~~~l  212 (216)
T 3dl0_A          160 RADDNEETVTKRLEVNMKQTAPLLDFYD-EKGYLVNVNGQQDIQDVYADLKVLL  212 (216)
T ss_dssp             CTTCSHHHHHHHHHHHHHHHHHHHHHHH-HHTCEEEEECSSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCCEEEEECCCCHHHHHHHHHHHH
Confidence             11223333333332211       111 1114578898899999999887654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.37  E-value=2.8e-12  Score=120.05  Aligned_cols=161  Identities=14%  Similarity=0.164  Sum_probs=89.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccC-----------------CCCCCcC-------
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAK-----------------QPLNDED-------   91 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~-----------------~~~~~~~-------   91 (433)
                      +++++|+|+|++||||||+++.|+++||+.++|++.+++...+.....|                 +.++...       
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  104 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL  104 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence            5678999999999999999999999999999999988622110000111                 1111100       


Q ss_pred             ---------ChhH----------HHHHHHHHHH---hhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHH
Q psy16778         92 ---------RRPW----------LNNINRIIHQ---LNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSR  149 (433)
Q Consensus        92 ---------~~~~----------~~~~~~~~~~---~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~R  149 (433)
                               ....          ...+.+.+..   .+..+.++|+++......   .+.+.  .++|||++|++++.+|
T Consensus       105 ~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~---v~~~~--~~~ifl~A~~e~r~~R  179 (252)
T 4e22_A          105 EGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTI---VFPDA--PVKIFLDASSQERAHR  179 (252)
T ss_dssp             TTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCC---CSTTC--SEEEEEECCHHHHHHH
T ss_pred             CCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceecee---ecCCC--CEEEEEECCHHHHHHH
Confidence                     0000          0011111111   223344666654211000   01112  4799999999999999


Q ss_pred             HHHh---hCCCCCHHhHHHHHhhccC--------CCCCCCCCeEEEccC-CCHHHHHHHHhcCCC
Q psy16778        150 LQKR---AEHFMPADLLESQFQTLEE--------PDPLVEPDVRTVSVN-EPLEGIVSKSAIMPP  202 (433)
Q Consensus       150 l~~R---~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~  202 (433)
                      ..+.   .+.....+.+...+..++.        ++. ...++++||++ .+++++++.|...+.
T Consensus       180 ~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~-~~~d~~~Idts~~~~eev~~~I~~~i~  243 (252)
T 4e22_A          180 RMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLV-PAADALVLDSTSMSIEQVIEQALAYAQ  243 (252)
T ss_dssp             HHHHHHHHTCCCCHHHHHHHHC------------CCC-CCTTEEEEECSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchh-ccCCeEEEECcCCCHHHHHHHHHHHHH
Confidence            7541   1122333333333333222        221 22346999998 799999998876653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.36  E-value=2.5e-13  Score=124.94  Aligned_cols=118  Identities=19%  Similarity=0.179  Sum_probs=73.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCC----CCCCcCChhHHHHHHHHHHHhhh--C
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQ----PLNDEDRRPWLNNINRIIHQLNV--D  109 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~  109 (433)
                      +++++|+|+|++||||||+++.|++.+|+.++++|++...........|.    .+.. ......+.....+...+.  .
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~   83 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GKLIPDDVMTRLALHELKNLT   83 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHTCT
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhccc
Confidence            45689999999999999999999999999999998876432100000000    0000 000001111122222222  3


Q ss_pred             CCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhh
Q psy16778        110 NLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus       110 ~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      +..+|+++.+......+.+..... ..+|||+++++++.+|+.+|.
T Consensus        84 ~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~  129 (227)
T 1zd8_A           84 QYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARW  129 (227)
T ss_dssp             TSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEE
T ss_pred             CCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCc
Confidence            567889887655555555554323 689999999999999998773

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=99.36  E-value=1.6e-12  Score=119.13  Aligned_cols=158  Identities=15%  Similarity=0.152  Sum_probs=93.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcC-------------------------
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDED-------------------------   91 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~-------------------------   91 (433)
                      ++++|+|+|++||||||+++.||+++|++++|.|.+.......++... .+....                         
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~~-~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~   91 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQ-FFRLADEKAGNNLLYRLGGGRKIDLHSKPSP   91 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC-------------------------------------
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCHH-HHHHHHhhccccHHHHHhccccccccccccc
Confidence            467999999999999999999999999999997755321000011100 000000                         


Q ss_pred             --C----hhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHH---HhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCC--
Q psy16778         92 --R----RPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDII---RNNNR-VVFIYLKAEFGVILSRLQKRAEHFMP--  159 (433)
Q Consensus        92 --~----~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l---~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~--  159 (433)
                        .    ...+....+++..+...+ ++||.+.+..    -.+   .+. + .++|||++|++++.+|+.++.+.+..  
T Consensus        92 ~~~~~~~~~~f~~~~~~i~~la~~~-~~Vi~Grggg----~vl~~~~~~-~~~~~VfL~A~~e~r~~Ri~~~~~~~~~~a  165 (223)
T 3hdt_A           92 NDKLTSPENLFKFQSEVMRELAESE-PCIFVGRAAG----YVLDQDEDI-ERLIRIFVYTDKVKKVQRVMEVDCIDEERA  165 (223)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHS-CEEEESTTHH----HHHHHCTTC-CEEEEEEEECCHHHHHHHHHHHHTCCHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHhCC-CEEEEeCCcc----hhcccccCC-CCeEEEEEECCHHHHHHHHHHhcCCCHHHH
Confidence              0    011222334455555444 6777633211    122   222 2 68999999999999999887654321  


Q ss_pred             HHhHHHHHhhccC---------CCCCCCCCeEEEccC-CCHHHHHHHHhcCCC
Q psy16778        160 ADLLESQFQTLEE---------PDPLVEPDVRTVSVN-EPLEGIVSKSAIMPP  202 (433)
Q Consensus       160 ~~~l~~~~~~~~~---------~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~  202 (433)
                      ...+....+.+..         |.. .+.++++||++ .+++++++.|...+.
T Consensus       166 ~~~I~~~d~~R~~~Y~~ytg~~~~~-~~~~dl~IdT~~l~~eevv~~I~~~i~  217 (223)
T 3hdt_A          166 KRRIKKIEKERKEYYKYFTGSEWHS-MKNYDLPINTTKLTLEETAELIKAYIR  217 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCTTC-GGGCSEEEECTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCC-cccCeEEEECCCCCHHHHHHHHHHHHH
Confidence            1122222222111         221 33478999998 899999999977654

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=99.36  E-value=3.6e-13  Score=131.56  Aligned_cols=171  Identities=13%  Similarity=0.132  Sum_probs=107.9

Q ss_pred             Hhhhcceeecccc--cCCCCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHH--
Q psy16778        221 FALKVLRIRPRVM--RDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEE--  296 (433)
Q Consensus       221 ~a~~~~~l~pr~l--~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~ee--  296 (433)
                      ..|++|+|+|+.|  .+++++||+|+|||+++++||+++|+++....+++.+.++|++|.+.|++|++++.... +|+  
T Consensus        54 ~~fd~i~l~~~~lP~~~~~~vd~st~i~g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~-le~~~  132 (365)
T 3sr7_A           54 NSFDDIELIHHSLPDYDLAEIDLSTHFAGQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTA-LKNPD  132 (365)
T ss_dssp             CGGGGEEECCCSSCCSCGGGCCCCEEETTEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC------------
T ss_pred             CCcceEEEECCCCCcCCcccccceEEECCEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeeccccccc-ccCcc
Confidence            5799999999999  78889999999999999999999999999998999999999999999999999887742 333  


Q ss_pred             -----HHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecc-cCccccccccccCCCccchHHHHHhhCC
Q psy16778        297 -----LAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNV-FGTRYADIRNKFNMPSHLNIEELAEKTP  370 (433)
Q Consensus       297 -----va~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~-~G~r~~~~~~~~~~~~~~s~e~i~~~~~  370 (433)
                           |.+..|+...+..+......+   +..+.++..|+.++.++++... ...++.+.  .|. .-...++.|.+..+
T Consensus       133 ~~~~~v~r~~P~~~~ianig~~~~~e---~~~~~ve~~~adal~ihln~~qe~~~p~Gd~--~~~-~~~~~I~~l~~~~~  206 (365)
T 3sr7_A          133 DTSYQVKKSRPHLLLATNIGLDKPYQ---AGLQAVRDLQPLFLQVHINLMQELLMPEGER--EFR-SWKKHLSDYAKKLQ  206 (365)
T ss_dssp             ------------CCEEEEEETTSCHH---HHHHHHHHHCCSCEEEEECHHHHHTSSSSCC--CCH-HHHHHHHHHHHHCC
T ss_pred             ccceEehhhCCCCcEEEEeCCCCCHH---HHHHHHHhcCCCEEEEeccccccccCCCCCC--cHH-HHHHHHHHHHHhhC
Confidence                 222235555666665544433   3456667889999999987421 11111000  000 00012333333322


Q ss_pred             CcchhhhhhccCCHH---HHHHHHHHHHHcCCcEEEEe
Q psy16778        371 QTTKWFQLYIYRDRE---ITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       371 ~~~~w~Qly~~~~~~---~~~~~~~ra~~~G~~aivlT  405 (433)
                             +++..|..   .+.+.++++.++|+++|+|.
T Consensus       207 -------~PVivK~vg~g~s~e~A~~l~~aGad~I~V~  237 (365)
T 3sr7_A          207 -------LPFILKEVGFGMDVKTIQTAIDLGVKTVDIS  237 (365)
T ss_dssp             -------SCEEEEECSSCCCHHHHHHHHHHTCCEEECC
T ss_pred             -------CCEEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence                   33333333   57889999999999999873

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.35  E-value=4.8e-12  Score=127.03  Aligned_cols=123  Identities=15%  Similarity=0.051  Sum_probs=94.4

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCC
Q psy16778         32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNL  111 (433)
Q Consensus        32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (433)
                      ++...++.+|+|+|+|||||||+++.|++.+|+.+++.|.+.                     .+......+...+..+.
T Consensus       252 ~~~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~---------------------~~~~~~~~~~~~l~~g~  310 (416)
T 3zvl_A          252 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG---------------------SWQRCVSSCQAALRQGK  310 (416)
T ss_dssp             CSCCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC---------------------SHHHHHHHHHHHHHTTC
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH---------------------HHHHHHHHHHHHHhcCC
Confidence            344567789999999999999999999999999999999862                     12334445566667888


Q ss_pred             cEEEEcCcccHHHHHHH----HhcCC-eEEEEEEcCHHHHHHHHHHhhC-----CCCCHHhHHHHHhhccCCCC
Q psy16778        112 TGVLVCSALRRNYRDII----RNNNR-VVFIYLKAEFGVILSRLQKRAE-----HFMPADLLESQFQTLEEPDP  175 (433)
Q Consensus       112 ~~Vi~~~~~~~~~~~~l----~~~~~-~~vv~L~~~~e~l~~Rl~~R~~-----~~~~~~~l~~~~~~~~~~~~  175 (433)
                      .+|+++.......+..+    ++.+. ..+|||+++.+++.+|+.+|..     ...+.+.+..+...++++..
T Consensus       311 ~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~  384 (416)
T 3zvl_A          311 RVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTL  384 (416)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCG
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCCCc
Confidence            99999887665555433    33333 6899999999999999999864     13456778888888888764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.35  E-value=2.2e-13  Score=124.71  Aligned_cols=113  Identities=12%  Similarity=0.193  Sum_probs=76.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc----------cccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK----------MSAKQPLNDEDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (433)
                      .|.++|+|+|||||||+++.|++++|+++++++++.+......          +..|....+   ......+.+.+....
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpd---ei~~~ll~~~l~~~~   84 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPD---SLIIGLVKERLKEAD   84 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCH---HHHHHHHHHHHHSGG
T ss_pred             ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhcccccc---HHHHHHHHHHHhCcc
Confidence            4889999999999999999999999999999988765321100          011111110   111222333332211


Q ss_pred             hCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhh
Q psy16778        108 VDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus       108 ~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                       ...++|+++.+.+....+.|.+...  ..||+|++|.+++.+|+..|.
T Consensus        85 -~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~  132 (230)
T 3gmt_A           85 -CANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRR  132 (230)
T ss_dssp             -GTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred             -cCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence             2357999988777666667766432  689999999999999999985

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=99.35  E-value=6.9e-13  Score=130.10  Aligned_cols=177  Identities=12%  Similarity=0.053  Sum_probs=116.2

Q ss_pred             HHhhhcceeeccccc--CCCCCCceeeeCCCccCCceeechh-hhccccCccchHHHHHHHHhcCCceEEecCCCCCHHH
Q psy16778        220 QFALKVLRIRPRVMR--DLSKRTLVTDALGHPVQIPIGVSPA-AMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEE  296 (433)
Q Consensus       220 ~~a~~~~~l~pr~l~--~~~~~d~~~~~~g~~~~~P~~~~p~-~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~ee  296 (433)
                      ..+|++|+|+||+|+  +++++|++|++||.+++.||++||+ |+++..+++++.+++++|.+.|++|++++.++. +|+
T Consensus        22 ~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G~~~~~~~~~~~-l~~  100 (349)
T 1p0k_A           22 ETGLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSA-LKD  100 (349)
T ss_dssp             CCSGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTT-TTC
T ss_pred             cCccceEEEEccccCCCCcccCCceeEECCcccCCceEEcCccccchhhhhHHHHHHHHHHHHcCCcEEeccchhc-ccC
Confidence            468999999999999  7789999999999999999999997 555334577899999999999999999888764 333


Q ss_pred             ---------HHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHh
Q psy16778        297 ---------LAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAE  367 (433)
Q Consensus       297 ---------va~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~  367 (433)
                               +....++.+.+.|+....+.+.   ..+.++.+|+.+|.++++.+.-.... .....+. .....++.+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~~---~~~~~~~~gad~i~i~~~~~~~~~~~-~~~~~~~-~~~~~i~~vr~  175 (349)
T 1p0k_A          101 PSERLSYEIVRKENPNGLIFANLGSEATAAQ---AKEAVEMIGANALQIHLNVIQEIVMP-EGDRSFS-GALKRIEQICS  175 (349)
T ss_dssp             HHHHHHHHHHHHHCSSSCEEEEEETTCCHHH---HHHHHHHTTCSEEEEEECTTTTC---------CT-THHHHHHHHHH
T ss_pred             cccccceehhhhhCCCceeEEeecCCCCHHH---HHHHHHhcCCCeEEecccchhhhcCC-CCCcchH-HHHHHHHHHHH
Confidence                     2334456678888875555543   33446678999999988764311000 0000000 00001233333


Q ss_pred             hCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEec
Q psy16778        368 KTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTV  406 (433)
Q Consensus       368 ~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTv  406 (433)
                      ...- +.+...  . ....+.+.+++|.++|+++|+++-
T Consensus       176 ~~~~-Pv~vK~--~-~~~~~~~~a~~a~~~Gad~I~v~~  210 (349)
T 1p0k_A          176 RVSV-PVIVKE--V-GFGMSKASAGKLYEAGAAAVDIGG  210 (349)
T ss_dssp             HCSS-CEEEEE--E-SSCCCHHHHHHHHHHTCSEEEEEC
T ss_pred             HcCC-CEEEEe--c-CCCCCHHHHHHHHHcCCCEEEEcC
Confidence            3221 112211  0 111347889999999999999963

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.34  E-value=1.8e-13  Score=121.12  Aligned_cols=153  Identities=13%  Similarity=0.183  Sum_probs=89.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEE
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGV  114 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  114 (433)
                      +.++.+|+|+|+|||||||+++.|++.+|+.+++.|++........ ..+..+......  ...+.+.+...+..| ++|
T Consensus         8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~g-~~v   83 (180)
T 3iij_A            8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYD-GYDEEYDCPILD--EDRVVDELDNQMREG-GVI   83 (180)
T ss_dssp             TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEE-EEETTTTEEEEC--HHHHHHHHHHHHHHC-CEE
T ss_pred             cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhh-hhhhhhcCccCC--hHHHHHHHHHHHhcC-CEE
Confidence            4567889999999999999999999999999999998764321111 111111111000  111222233333445 466


Q ss_pred             EEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCC-CCC-----HHhHHHHHhhccCCCCCCCCCeEEEccC-
Q psy16778        115 LVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH-FMP-----ADLLESQFQTLEEPDPLVEPDVRTVSVN-  187 (433)
Q Consensus       115 i~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~-~~~-----~~~l~~~~~~~~~~~~~~~~~~~~Id~~-  187 (433)
                      ++....     ..+.+.....+|||+++++++.+|+.+|+.. +..     .+.+...+..+.+.|.    ++++|+++ 
T Consensus        84 v~~~~~-----~~~~~~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~----~~~~i~~~~  154 (180)
T 3iij_A           84 VDYHGC-----DFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK----EEIVHQLPS  154 (180)
T ss_dssp             EECSCC-----TTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC----GGGEEEEEC
T ss_pred             EEechh-----hhcchhcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcC----CCeEEEcCC
Confidence            654331     1111110148999999999999999988521 110     1223344445555542    46777776 


Q ss_pred             CCHHHH---HHHHhcC
Q psy16778        188 EPLEGI---VSKSAIM  200 (433)
Q Consensus       188 ~~~ee~---~~~i~~~  200 (433)
                      .+++++   +..|...
T Consensus       155 ~~~~ev~~~v~~i~~~  170 (180)
T 3iij_A          155 NKPEELENNVDQILKW  170 (180)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            888888   5555433

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.34  E-value=3.9e-12  Score=113.46  Aligned_cols=162  Identities=15%  Similarity=0.133  Sum_probs=93.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccc----cccCCCCCCcCCh-----hHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDK----MSAKQPLNDEDRR-----PWLNNINRIIHQL  106 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~~  106 (433)
                      ++|+|+|++||||||+++.|++++   |+.++++|..........    ...| .+......     ..+..+...+...
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~i~~~   79 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTE-ELDERTELLLFEASRSKLIEEKIIPD   79 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999998   999999886432111000    0011 01110000     0112233445555


Q ss_pred             hhCCCcEEEEc---------Cc---ccHHH-HH---HHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhh
Q psy16778        107 NVDNLTGVLVC---------SA---LRRNY-RD---IIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQT  169 (433)
Q Consensus       107 ~~~~~~~Vi~~---------~~---~~~~~-~~---~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~  169 (433)
                      +..+..+|++.         ++   ....+ .+   .+..... ..+|||++|++++.+|+.+|+ +....+.+......
T Consensus        80 l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~-~~~~~~~~~~~~~~  158 (195)
T 2pbr_A           80 LKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKN-RFENKEFLEKVRKG  158 (195)
T ss_dssp             HHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT-CCCCHHHHHHHHHH
T ss_pred             HhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC-ccchHHHHHHHHHH
Confidence            66776666662         11   11212 11   1221112 689999999999999998664 33333333333232


Q ss_pred             ccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        170 LEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       170 ~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                      ++++.... ...++|+++.+++++.++|.+.+.+
T Consensus       159 ~~~~~~~~-~~~~~Id~~~~~~~~~~~i~~~l~~  191 (195)
T 2pbr_A          159 FLELAKEE-ENVVVIDASGEEEEVFKEILRALSG  191 (195)
T ss_dssp             HHHHHHHS-TTEEEEETTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHhhC-CCEEEEECCCCHHHHHHHHHHHHHH
Confidence            33221000 2558999989999999988766543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.34  E-value=3.7e-12  Score=116.78  Aligned_cols=157  Identities=13%  Similarity=0.113  Sum_probs=88.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCC-----------------CCCc--------C
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP-----------------LNDE--------D   91 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~-----------------~~~~--------~   91 (433)
                      ++++|+|+|++||||||+++.|++.+|++++++|++...........|..                 ++..        .
T Consensus         4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (227)
T 1cke_A            4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE   83 (227)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence            35799999999999999999999999999999998865321100001111                 1110        0


Q ss_pred             Ch---hHH---------------HHHHHHHHHh---hhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHH
Q psy16778         92 RR---PWL---------------NNINRIIHQL---NVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRL  150 (433)
Q Consensus        92 ~~---~~~---------------~~~~~~~~~~---~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl  150 (433)
                      +.   ..+               ..+.+.+...   ...+.++|+++.....   ..+...  .++|||+++++++.+|.
T Consensus        84 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~---~~~~~~--d~~i~l~~~~e~~~~R~  158 (227)
T 1cke_A           84 GEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT---VVFPDA--PVKIFLDASSEERAHRR  158 (227)
T ss_dssp             TEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC---CCCTTC--SEEEEEECCHHHHHHHH
T ss_pred             CeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc---eEecCC--CEEEEEeCCHHHHHHHH
Confidence            00   001               1122222222   1234567777652211   111122  58999999999999995


Q ss_pred             H----HhhCCCCCHHhHHHHHhh--------c-cCCCCCCCCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778        151 Q----KRAEHFMPADLLESQFQT--------L-EEPDPLVEPDVRTVSVN-EPLEGIVSKSAIMP  201 (433)
Q Consensus       151 ~----~R~~~~~~~~~l~~~~~~--------~-~~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l  201 (433)
                      .    .| +.....+.....+..        . ++.+  ...+.++||++ .+++++.++|.+.+
T Consensus       159 ~~~l~~r-g~~~~~~~~~~~i~~R~~~~~~~~~~pl~--~~~~~~~Id~~~~~~~ev~~~I~~~l  220 (227)
T 1cke_A          159 MLQLQVK-GFSVNFERLLAEIKERDDRDRNRAVAPLV--PAADALVLDSTTLSIEQVIEKALQYA  220 (227)
T ss_dssp             HHHHHHH-TCCCCHHHHHHHHC-------------CC--CCTTCEEEETTTSCHHHHHHHHHHHH
T ss_pred             HHHHHhC-CccCCHHHHHHHHHHHHHhhhhhcccCcc--CCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            3    33 222222322222221        1 2222  22355999999 89999999887654

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.33  E-value=1.1e-12  Score=121.18  Aligned_cols=160  Identities=12%  Similarity=0.075  Sum_probs=94.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc----------cccCCCCCCcCChhHHHHHHHHH
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK----------MSAKQPLNDEDRRPWLNNINRII  103 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  103 (433)
                      ....++.|+|+|++||||||+++.|++++|+.++++|++.+......          +..|....       .+.+...+
T Consensus        12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~-------~~~~~~~i   84 (233)
T 1ak2_A           12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS-------DEMVLELI   84 (233)
T ss_dssp             --CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC-------HHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCC-------HHHHHHHH
Confidence            34566899999999999999999999999999999988754310000          00111110       11122223


Q ss_pred             HHhhh---CCCcEEEEcCcccHHHHH----HHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCC------------------
Q psy16778        104 HQLNV---DNLTGVLVCSALRRNYRD----IIRNNN-R-VVFIYLKAEFGVILSRLQKRAEH------------------  156 (433)
Q Consensus       104 ~~~~~---~~~~~Vi~~~~~~~~~~~----~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~------------------  156 (433)
                      ...+.   .+.++|+++........+    .+.... . ..+|||+++++++.+|+..|..+                  
T Consensus        85 ~~~l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~  164 (233)
T 1ak2_A           85 EKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPM  164 (233)
T ss_dssp             HHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTT
T ss_pred             HHHHhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccc
Confidence            33222   235688886443333333    333222 2 68999999999999999888411                  


Q ss_pred             -------C------CCHHhHHHHHhhccC-------CCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        157 -------F------MPADLLESQFQTLEE-------PDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       157 -------~------~~~~~l~~~~~~~~~-------~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                             +      ...+.+...+..+..       .|. .....++||++.+++++.+.|.+.+
T Consensus       165 ~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~-~~~~~~~id~~~~~~~v~~~I~~~l  228 (233)
T 1ak2_A          165 KDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYS-KRGIHSAIDASQTPDVVFASILAAF  228 (233)
T ss_dssp             BCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCEEEEETTSCHHHHHHHHHHHH
T ss_pred             ccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCCEEEEECCCCHHHHHHHHHHHH
Confidence                   1      112233333322221       110 1124688998899999999887654

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.33  E-value=3e-12  Score=116.63  Aligned_cols=116  Identities=10%  Similarity=0.090  Sum_probs=70.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhC---CCc
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVD---NLT  112 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~  112 (433)
                      |+|+|+|++||||||+++.|++.+|+.++++|++.++........|..+..   .........+...+...+..   +.+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~   80 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence            479999999999999999999999999999988764310000001100000   00000011222233333322   246


Q ss_pred             EEEEcCcccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhh
Q psy16778        113 GVLVCSALRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus       113 ~Vi~~~~~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      +|+++........+.+.+.+ . ..+|||+++++++.+|+.+|.
T Consensus        81 ~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~  124 (214)
T 1e4v_A           81 FLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRR  124 (214)
T ss_dssp             EEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred             EEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence            78876544444445555432 2 689999999999999998775

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.33  E-value=9.8e-13  Score=119.28  Aligned_cols=167  Identities=17%  Similarity=0.134  Sum_probs=93.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccc--c-----ccc-cccCCCCCCcCChhHHH--HH--HHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS--N-----IDK-MSAKQPLNDEDRRPWLN--NI--NRI  102 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~--~-----~~~-~~~~~~~~~~~~~~~~~--~~--~~~  102 (433)
                      ++++++|+|+|++||||||+++.|+++++..+++.|.+....  .     ... ...+..+........+.  ..  .+.
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNE   86 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999876666654332211  0     000 01111111100001111  00  012


Q ss_pred             HHHhhhCCCcEEEEcCccc----HHH-----HHHHHh---c-CC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHh
Q psy16778        103 IHQLNVDNLTGVLVCSALR----RNY-----RDIIRN---N-NR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQ  168 (433)
Q Consensus       103 ~~~~~~~~~~~Vi~~~~~~----~~~-----~~~l~~---~-~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~  168 (433)
                      +...+..+..+|++.....    ...     .+++..   . .. ..+|||++|++++.+|+.+|.++....+.......
T Consensus        87 i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r~~~~~~~~~~~~  166 (212)
T 2wwf_A           87 IKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIYE  166 (212)
T ss_dssp             HHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSSTTCSHHHHHHHHH
T ss_pred             HHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcccccHHHHHHHHHH
Confidence            4444556666777654321    011     123321   1 12 68999999999999999765333333332222223


Q ss_pred             hccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        169 TLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       169 ~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                      .+.++.  ...++++||++.+++++.++|.+.+..
T Consensus       167 ~~~~~~--~~~~~~~Id~~~~~~~~~~~i~~~l~~  199 (212)
T 2wwf_A          167 TYKHFA--HEDYWINIDATRKIEDIHNDIVKEVTK  199 (212)
T ss_dssp             HGGGGT--TCTTEEEEECSSCHHHHHHHHHHHHTT
T ss_pred             HHHHHh--ccCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            333332  133689999999999999998877654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.33  E-value=2.4e-12  Score=115.28  Aligned_cols=146  Identities=20%  Similarity=0.189  Sum_probs=85.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccc---cc--ccCC----------------CCCCcCChhHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNID---KM--SAKQ----------------PLNDEDRRPWL   96 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~---~~--~~~~----------------~~~~~~~~~~~   96 (433)
                      ..+|+|+|++||||||+++.|++.+|++++|+|.+.+.....   .+  ..|.                .|.++.....+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~~l   91 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLKKL   91 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHHHH
Confidence            379999999999999999999998899999999985331110   00  0011                12221111111


Q ss_pred             HH-----HHHHHHHhhhC-CCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhc
Q psy16778         97 NN-----INRIIHQLNVD-NLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTL  170 (433)
Q Consensus        97 ~~-----~~~~~~~~~~~-~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~  170 (433)
                      +.     +...+...... +..+|+++..+.+..   +.... ..+|||++|++++.+|+            +..++..+
T Consensus        92 ~~i~hP~i~~~~~~~~~~~~~~vv~d~pll~e~~---~~~~~-d~vi~v~a~~e~r~~Rl------------i~~q~~~~  155 (192)
T 2grj_A           92 ELLVHPLMKKRVQEIINKTSGLIVIEAALLKRMG---LDQLC-DHVITVVASRETILKRN------------READRRLK  155 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEEEECTTTTTTT---GGGGC-SEEEEEECCHHHHHHHC------------SSHHHHHT
T ss_pred             HhhhCHHHHHHHHHHHHHcCCEEEEEEeceeecC---hHHhC-CEEEEEECCHHHHHHHH------------HHhcCCch
Confidence            11     11111222222 333445544333321   22222 47999999999999998            12233331


Q ss_pred             cCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        171 EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       171 ~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      .+..  .+.++++|+++.+++++..++.+.+
T Consensus       156 ~~~~--~~~AD~vI~n~~~~~~l~~~v~~~~  184 (192)
T 2grj_A          156 FQED--IVPQGIVVANNSTLEDLEKKVEEVM  184 (192)
T ss_dssp             TCTT--CCCCSEEEECSSCHHHHHHHHHHHH
T ss_pred             hhhH--HhcCCEEEECCCCHHHHHHHHHHHH
Confidence            1111  3458899999999999998886543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.33  E-value=2.8e-11  Score=108.96  Aligned_cols=161  Identities=16%  Similarity=0.086  Sum_probs=92.2

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccc-ccccccCCCCCCcCChhHHHHH------------
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN-IDKMSAKQPLNDEDRRPWLNNI------------   99 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------   99 (433)
                      +++++|.+|+|+|++||||||+++.|++.+....++...+..... ......++.++.......+...            
T Consensus         2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (205)
T 3tr0_A            2 NAMNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYER   81 (205)
T ss_dssp             ---CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTE
T ss_pred             CcCCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecc
Confidence            457789999999999999999999999987655555544432211 0111234444443222221110            


Q ss_pred             -----HHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEc-CHHHHHHHHHHhhCCCCC--HHhHHHHHhhc
Q psy16778        100 -----NRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKA-EFGVILSRLQKRAEHFMP--ADLLESQFQTL  170 (433)
Q Consensus       100 -----~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~-~~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~  170 (433)
                           ...+...+..+..+|++...   .....+.+... ..+||+.. +++++.+|+.+|+.....  ...+..+....
T Consensus        82 ~~~~~~~~i~~~l~~g~~vi~d~~~---~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~  158 (205)
T 3tr0_A           82 HYGTEKDWVLRQLKAGRDVLLEIDW---QGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEM  158 (205)
T ss_dssp             EEEEEHHHHHHHHHTTCEEEEECCH---HHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHcCCeEEEEECH---HHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence                 12455556677777777542   11122223222 45666665 699999999999743222  23344443333


Q ss_pred             cCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        171 EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       171 ~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      +..    ..++++|+++ +++++.+++...+
T Consensus       159 ~~~----~~~d~vi~n~-~~~~~~~~l~~~i  184 (205)
T 3tr0_A          159 AHY----KEFDYLVVND-NFDQAVQNLIHII  184 (205)
T ss_dssp             TTG----GGCSEEEECS-SHHHHHHHHHHHH
T ss_pred             hcc----cCCCEEEECC-CHHHHHHHHHHHH
Confidence            222    2356777776 8888888886655

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.33  E-value=1.5e-12  Score=117.63  Aligned_cols=156  Identities=11%  Similarity=0.142  Sum_probs=92.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcc------cccccc--ccCC-CCCCcCC-------------hhHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQ------SNIDKM--SAKQ-PLNDEDR-------------RPWL   96 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~------~~~~~~--~~~~-~~~~~~~-------------~~~~   96 (433)
                      ..|+|||.+||||||+++.|++ +|++++|+|.+...      .....+  ..|. .+...+.             ....
T Consensus        10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~   88 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR   88 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence            5899999999999999999998 89999999986321      000000  0111 1211111             1112


Q ss_pred             HHHHHHHHH--------hh-hCCC-cEEEEcCcccH-HHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHH
Q psy16778         97 NNINRIIHQ--------LN-VDNL-TGVLVCSALRR-NYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLES  165 (433)
Q Consensus        97 ~~~~~~~~~--------~~-~~~~-~~Vi~~~~~~~-~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~  165 (433)
                      ..++.++..        .. ..+. .+|++..-+.+ .....+.    +.+|++++|++++.+|+.+|.+  ...+.+..
T Consensus        89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~~~----D~vi~V~ap~e~r~~Rl~~Rdg--~s~eea~~  162 (210)
T 4i1u_A           89 RRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRNWKARC----DRVLVVDCPVDTQIARVMQRNG--FTREQVEA  162 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHHHHHC----SEEEEEECCHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCccccC----CeEEEEECCHHHHHHHHHhcCC--CCHHHHHH
Confidence            223333222        11 1233 45666655555 3333222    3799999999999999999974  33333333


Q ss_pred             HHhhccCCCCCCCCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778        166 QFQTLEEPDPLVEPDVRTVSVN-EPLEGIVSKSAIMP  201 (433)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l  201 (433)
                      .+..+.+.....+.++++|+++ .+.+++..++.+.+
T Consensus       163 ri~~Q~~~eek~~~AD~VIdN~~gsle~l~~qV~~l~  199 (210)
T 4i1u_A          163 IIARQATREARLAAADDVIVNDAATPDALAVQVDALH  199 (210)
T ss_dssp             HHHHSCCHHHHHHTCSEEEECSSCCHHHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHhCCEEEECCCCCHHHHHHHHHHHH
Confidence            3322222111123488999999 99999999886543

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.32  E-value=4.8e-12  Score=114.85  Aligned_cols=164  Identities=14%  Similarity=0.159  Sum_probs=86.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccc---c----ccc-cccCCCCCCcCChhHHH--HH--HHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS---N----IDK-MSAKQPLNDEDRRPWLN--NI--NRI  102 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~---~----~~~-~~~~~~~~~~~~~~~~~--~~--~~~  102 (433)
                      ++++++|+|+|++||||||+++.|+++++..+++.+.+..+.   .    ... ...+..+........+.  ..  .+.
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   85 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPL   85 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999998854443333222110   0    000 01111121110000000  00  023


Q ss_pred             HHHhhhCCCcEEEEcCc------------ccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCCCCCHH---hHHH
Q psy16778        103 IHQLNVDNLTGVLVCSA------------LRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRAEHFMPAD---LLES  165 (433)
Q Consensus       103 ~~~~~~~~~~~Vi~~~~------------~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~---~l~~  165 (433)
                      +...+..+..+|++...            ....+...+.... . ..+|||++|++++.+|+..|.++....+   .+..
T Consensus        86 i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~~~~~~~~~~~~~~  165 (215)
T 1nn5_A           86 IKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALR  165 (215)
T ss_dssp             HHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHHHHHHHHH
T ss_pred             HHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccchHHHHHHHHH
Confidence            44555667667777321            1222322222211 1 6899999999999999975433333222   2333


Q ss_pred             HHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        166 QFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ++..+...+   ....++|+++.+++++.++|.+.+
T Consensus       166 ~~~~~~~~~---~~~~~~Id~~~~~e~~~~~i~~~l  198 (215)
T 1nn5_A          166 CFHQLMKDT---TLNWKMVDASKSIEAVHEDIRVLS  198 (215)
T ss_dssp             HHHHHTTCT---TSCEEEEETTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhC---CCCEEEEECCCCHHHHHHHHHHHH
Confidence            344433322   125688988899999998887664

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.31  E-value=8e-12  Score=116.84  Aligned_cols=162  Identities=14%  Similarity=0.110  Sum_probs=94.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCe----------EEeCCCCCcccccc----ccccCCCCCCcCChhHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVK----------FIDGDHLHPQSNID----KMSAKQPLNDEDRRPWLNNIN  100 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~----------~id~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  100 (433)
                      ..++.+|+|+|++||||||+++.|++.+|+.          ++++|+++......    .....+.|..+.... ...+.
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d-~~~l~   97 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFD-NELIL   97 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBC-HHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhh-HHHHH
Confidence            3456799999999999999999999999987          89999997632211    111234554433321 11122


Q ss_pred             HHHHHhhh------------------------CCCcEEEEcCccc-HHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhC
Q psy16778        101 RIIHQLNV------------------------DNLTGVLVCSALR-RNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAE  155 (433)
Q Consensus       101 ~~~~~~~~------------------------~~~~~Vi~~~~~~-~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~  155 (433)
                      ..+..+..                        ....+|+++.... ..   .+.+.. ..+|||+++++++.+|+.+|..
T Consensus        98 ~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~---~~~~~~-d~vi~l~~~~e~~~~R~~~R~~  173 (252)
T 1uj2_A           98 KTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ---EVRDLF-QMKLFVDTDADTRLSRRVLRDI  173 (252)
T ss_dssp             HHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH---HHHHHC-SEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH---HHHHhc-CeeEEEeCCHHHHHHHHHHHHH
Confidence            22222211                        1223455543332 11   122222 3799999999999999988851


Q ss_pred             --CCCCHHhHHHHHhhc-----c---CCCCCCCCCeEEE----ccCCCHHHHHHHHhcCCCC
Q psy16778        156 --HFMPADLLESQFQTL-----E---EPDPLVEPDVRTV----SVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       156 --~~~~~~~l~~~~~~~-----~---~~~~~~~~~~~~I----d~~~~~ee~~~~i~~~l~~  203 (433)
                        +....+.+...+..+     .   .++  .+.++++|    +++.+++++.++|.+.+..
T Consensus       174 ~~rg~~~e~i~~~~~~~~~~~~~~~i~~~--~~~ad~vI~~~id~~~s~e~v~~~I~~~l~~  233 (252)
T 1uj2_A          174 SERGRDLEQILSQYITFVKPAFEEFCLPT--KKYADVIIPRGADNLVAINLIVQHIQDILNG  233 (252)
T ss_dssp             HHSCCCHHHHHHHHHHTHHHHHHHHTGGG--GGGCSEEEETGGGCHHHHHHHHHHHHHHHHC
T ss_pred             hhhCCCHHHHHHHHHHhccHHHHHHhhhh--hhcCcEEEecCCCChhHHHHHHHHHHHHHcc
Confidence              112333333332221     1   122  23367888    7768899998888776543

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=99.31  E-value=2.5e-12  Score=116.16  Aligned_cols=154  Identities=17%  Similarity=0.148  Sum_probs=88.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC-----------------------------
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND-----------------------------   89 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~-----------------------------   89 (433)
                      ++|+|+|++||||||+++.|++.+|++++|.|.+...........|..+..                             
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   82 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGE   82 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCe
Confidence            389999999999999999999999999999998864321100001111100                             


Q ss_pred             ----cCChhHHH----------HHHHHHHHhh--hCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778         90 ----EDRRPWLN----------NINRIIHQLN--VDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR  153 (433)
Q Consensus        90 ----~~~~~~~~----------~~~~~~~~~~--~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R  153 (433)
                          ......+.          .+.+.+....  .. ..+|+++.....   ..+...  ..+|||++|++++.+|+.+|
T Consensus        83 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~vi~g~~~~~---~~~~~~--d~~i~l~a~~e~~~~R~~~r  156 (208)
T 3ake_A           83 DLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP-PPFVAEGRDMGT---AVFPEA--AHKFYLTASPEVRAWRRARE  156 (208)
T ss_dssp             ECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC-SCEEEEESSCCC---CCCTTC--SEEEEEECCHHHHHHHHHHT
T ss_pred             eCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc-CCEEEEccceeE---EEecCC--cEEEEEECCHHHHHHHHHhh
Confidence                00000000          1111111110  11 356666543220   011111  58999999999999999888


Q ss_pred             hCCCCCHHhHHHHHhhccCCCCC--CCCCe-EEEccC-CCHHHHHHHHhcC
Q psy16778        154 AEHFMPADLLESQFQTLEEPDPL--VEPDV-RTVSVN-EPLEGIVSKSAIM  200 (433)
Q Consensus       154 ~~~~~~~~~l~~~~~~~~~~~~~--~~~~~-~~Id~~-~~~ee~~~~i~~~  200 (433)
                      ..  ...+.+...+..++..+..  ...++ ++||++ .+++++.++|.+.
T Consensus       157 ~~--~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~  205 (208)
T 3ake_A          157 RP--QAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAH  205 (208)
T ss_dssp             SS--SCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHH
T ss_pred             cc--cCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHH
Confidence            53  2334444444433222210  22244 999999 5999999988754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.31  E-value=4.1e-12  Score=112.27  Aligned_cols=152  Identities=18%  Similarity=0.225  Sum_probs=85.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEE--eCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL---GVKFI--DGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN  110 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~i--d~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (433)
                      .+|++|+|+|++||||||+++.|++.+   |++++  +.|.+...     +.....+........++.+......+...+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG-----LNKNLGFSPEDREENVRRIAEVAKLFADAG   77 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT-----TTTTCCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHH-----HhhccccccccHHHHHHHHHHHHHHHHHCC
Confidence            467899999999999999999999988   97776  44444221     111122222222334444433221122344


Q ss_pred             CcEEEEcCcc--c----HHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHh------hCCCCCHHhHHHHHhhccCCCCCC
Q psy16778        111 LTGVLVCSAL--R----RNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKR------AEHFMPADLLESQFQTLEEPDPLV  177 (433)
Q Consensus       111 ~~~Vi~~~~~--~----~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R------~~~~~~~~~l~~~~~~~~~~~~~~  177 (433)
                        +++.++..  .    ...++.+..... +.+|||++|++++.+|+.+|      .......       ......+...
T Consensus        78 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  148 (179)
T 2pez_A           78 --LVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGF-------TGIDSEYEKP  148 (179)
T ss_dssp             --CEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSC-------BTTTBCCCCC
T ss_pred             --CEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhccccccc-------ccCCccccCC
Confidence              33333332  1    222333333222 68999999999999997543      1111100       0011111111


Q ss_pred             CCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778        178 EPDVRTVSVN-EPLEGIVSKSAIMP  201 (433)
Q Consensus       178 ~~~~~~Id~~-~~~ee~~~~i~~~l  201 (433)
                      +.++++|+++ .+++++.++|.+.+
T Consensus       149 ~~ad~vid~~~~~~~~~~~~i~~~l  173 (179)
T 2pez_A          149 EAPELVLKTDSCDVNDCVQQVVELL  173 (179)
T ss_dssp             SSCSEEEETTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCHHHHHHHHHHHH
Confidence            2367889887 79999999987654

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=99.31  E-value=5.2e-12  Score=116.19  Aligned_cols=161  Identities=17%  Similarity=0.159  Sum_probs=92.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcC-----------------------
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDED-----------------------   91 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~-----------------------   91 (433)
                      ++++++|+|+|++||||||+++.|++++|+.++++|.+++...+..+..|....+..                       
T Consensus         6 ~~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~   85 (233)
T 3r20_A            6 VSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAF   85 (233)
T ss_dssp             ---CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEE
Confidence            345689999999999999999999999999999999986443322222233222110                       


Q ss_pred             ------------------------ChhHHHHHHHHHHHhhhCCCcEEEEcC--c--ccHHHHHHHHhcCCeEEEEEEcCH
Q psy16778         92 ------------------------RRPWLNNINRIIHQLNVDNLTGVLVCS--A--LRRNYRDIIRNNNRVVFIYLKAEF  143 (433)
Q Consensus        92 ------------------------~~~~~~~~~~~~~~~~~~~~~~Vi~~~--~--~~~~~~~~l~~~~~~~vv~L~~~~  143 (433)
                                              .....+.+.+....+.....++|+++-  +  ..+       +.  .+.|||++|+
T Consensus        86 l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~p-------da--~lkifl~A~~  156 (233)
T 3r20_A           86 LAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLP-------DA--DVKIFLTASA  156 (233)
T ss_dssp             ETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCCT-------TC--SEEEEEECCH
T ss_pred             ECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEcC-------CC--CEEEEEECCH
Confidence                                    000011222222333333146777642  1  111       12  4899999999


Q ss_pred             HHHHHHHHHh---hCCCCCHHhHHHHH--------hhccCCCCCCCCCeEEEccC-CCHHHHHHHHhcCCCCCC
Q psy16778        144 GVILSRLQKR---AEHFMPADLLESQF--------QTLEEPDPLVEPDVRTVSVN-EPLEGIVSKSAIMPPTRA  205 (433)
Q Consensus       144 e~l~~Rl~~R---~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~~~~  205 (433)
                      +++.+|..+.   .+.....+.+...+        .++..+.. ...+.++||++ .+++++++.|...+..+.
T Consensus       157 e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~-~~~dal~IDTs~l~iee~v~~I~~~i~~~~  229 (233)
T 3r20_A          157 EERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLR-AADDALVVDTSDMDQAQVIAHLLDLVTAQA  229 (233)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCS-CCTTSEEEECTTSCHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccc-cccCcEEEECCCCCHHHHHHHHHHHHHHhh
Confidence            9999997642   11222322222221        12222321 22234999998 999999999998876643

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.31  E-value=9e-12  Score=129.67  Aligned_cols=157  Identities=16%  Similarity=0.172  Sum_probs=97.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCC--CCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGD--HLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNL  111 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (433)
                      ++++|+|+|++||||||+++.|++++   |+.+++.|  .+..     .+..+..|........++.+.+++..+...|.
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~-----~L~~~~~fs~~dree~~r~i~eva~~~l~~G~  125 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ-----GLNKNLGFSPEDREENVRRIAEVAKLFADAGL  125 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT-----TTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh-----ccCccccCChhhhHHHHHHHHHHHHHHHhCCC
Confidence            67899999999999999999999999   88876654  3321     11223334434445566666665666666775


Q ss_pred             cEEEEcCccc----HHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhh---CCCCCHHhHHHHHhhccCCCCCCCCCeEE
Q psy16778        112 TGVLVCSALR----RNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRA---EHFMPADLLESQFQTLEEPDPLVEPDVRT  183 (433)
Q Consensus       112 ~~Vi~~~~~~----~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  183 (433)
                      .+|.+.....    ...++.+.+... +++|||++|++++.+|+.++.   .+..   . ...+......|...+.++++
T Consensus       126 iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~---~-~~~~~~~~~~Ye~p~~~dlv  201 (630)
T 1x6v_B          126 VCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAG---E-IKGFTGIDSEYEKPEAPELV  201 (630)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC--------CBTTTBCCCCCSSCSEE
T ss_pred             EEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhh---h-HHHHHHhhhhhcccCCCcEE
Confidence            5555533322    333444444332 689999999999999975210   0000   0 01122233333211346799


Q ss_pred             EccC-CCHHHHHHHHhcCCC
Q psy16778        184 VSVN-EPLEGIVSKSAIMPP  202 (433)
Q Consensus       184 Id~~-~~~ee~~~~i~~~l~  202 (433)
                      ||++ .++++++++|.+.+.
T Consensus       202 IDts~~s~eevv~~Il~~L~  221 (630)
T 1x6v_B          202 LKTDSCDVNDCVQQVVELLQ  221 (630)
T ss_dssp             EETTSSCHHHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHHHH
Confidence            9998 799999999877664

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.31  E-value=1.4e-12  Score=116.29  Aligned_cols=157  Identities=15%  Similarity=0.119  Sum_probs=87.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCccccccccccCCCCCCc----CC----hhHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHPQSNIDKMSAKQPLNDE----DR----RPWLNNINRIIHQ  105 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~  105 (433)
                      ++|+|+|++||||||+++.|+++++     +.++++|++......   ..++.....    ..    ...+....+.+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   78 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATAL---KLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAE   78 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHH---TTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHH---hcccccchhhhhcCCHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999997     788887665432110   111110000    00    1122222223344


Q ss_pred             hh--hCCCcEEEEcCcc--------cHHHHHHHHhcCCeEEEEEEcCHHHHHHH-HHH--hhC-CCCCHHh------HHH
Q psy16778        106 LN--VDNLTGVLVCSAL--------RRNYRDIIRNNNRVVFIYLKAEFGVILSR-LQK--RAE-HFMPADL------LES  165 (433)
Q Consensus       106 ~~--~~~~~~Vi~~~~~--------~~~~~~~l~~~~~~~vv~L~~~~e~l~~R-l~~--R~~-~~~~~~~------l~~  165 (433)
                      .+  ..+..+|+++...        .....+.+++.....+|||++|++++.+| +..  |+. .....+.      +..
T Consensus        79 ~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~~~  158 (194)
T 1nks_A           79 EARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFAR  158 (194)
T ss_dssp             HHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHH
T ss_pred             HhhccCCCEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHHHHH
Confidence            44  5666777776421        00002223322125899999999998866 766  643 2222222      222


Q ss_pred             HHhhccCCCCCCCCCeEEE-ccCCCHHHHHHHHhcC
Q psy16778        166 QFQTLEEPDPLVEPDVRTV-SVNEPLEGIVSKSAIM  200 (433)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~I-d~~~~~ee~~~~i~~~  200 (433)
                      .+..+...+  .....++| +++.+++++.++|.+.
T Consensus       159 ~~~~~~~~~--~~~~~~~I~d~~~~~e~v~~~I~~~  192 (194)
T 1nks_A          159 YAATASAVL--AGSTVKVIVNVEGDPSIAANEIIRS  192 (194)
T ss_dssp             HHHHHHHHH--HTCEEEEEECCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHh--cCCcEEEEeCCCCCHHHHHHHHHHH
Confidence            232222211  11245788 7779999999988754

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=99.31  E-value=6.2e-13  Score=129.47  Aligned_cols=167  Identities=19%  Similarity=0.220  Sum_probs=107.3

Q ss_pred             hHHhhhcceeeccccc--CCCCCCceeeeCCCccCCceeechhhhccccCccch---HHHHHHHHhcCCceEEecCCCCC
Q psy16778        219 EQFALKVLRIRPRVMR--DLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGE---IGNAAAVGEVGGIYILSTISTTS  293 (433)
Q Consensus       219 ~~~a~~~~~l~pr~l~--~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e---~~~a~aa~~~g~~~~~s~~s~~~  293 (433)
                      |+.+|++|+|+||+|.  +++++|++|++||++++.||++||+++   .|+.+|   .+++++|.+.|+++++|+.++. 
T Consensus        24 ~~~~f~~~~l~p~~l~~~~~~~~d~~~~i~g~~l~~P~~iapm~g---~~~~~~~~~~~la~~a~~~G~~~~~~~~~~~-   99 (332)
T 1vcf_A           24 TTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTG---GEENGERINLALAEAAEALGVGMMLGSGRIL-   99 (332)
T ss_dssp             CCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC------CCHHHHHHHHHHHHHHHTCEEEEEECHHH-
T ss_pred             chhhhhhcEEehhhCCCCCCCCCCcceEECCcccCCceEEecccc---CCcchhHHHHHHHHHHHHcCCCEEeCCchhc-
Confidence            4578999999999999  778999999999999999999999874   388876   7899999999999999998875 


Q ss_pred             HHHHHHhCCCCcceEEEeecc-C---------HHH----HHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCcc
Q psy16778        294 IEELAEKTPQTTKWFQLYIYR-D---------REI----TKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSH  359 (433)
Q Consensus       294 ~eeva~~~~~~~~w~qly~~~-d---------~~~----~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~  359 (433)
                      +|+.     +...|||+.-.. |         ..+    .....+.++..++.++.++++...-...  +....|    .
T Consensus       100 le~~-----~~~~~~ql~~~~~d~pv~~~~~~~q~~~~~~~~~~~a~~~~~~~a~~i~~n~~~~~~~--~~~~~~----~  168 (332)
T 1vcf_A          100 LERP-----EALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQ--RGDTDF----R  168 (332)
T ss_dssp             HHCT-----TTHHHHCCTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHT--TSCCCC----T
T ss_pred             ccCC-----CccceEEeeccCCCceeecccChhhhhccChHHHHHHHhhcCCCceeeccchHHHHhc--CCCccH----H
Confidence            6653     334677752110 0         000    1233444456688888877753100000  000000    0


Q ss_pred             chHHHHHhhCCCcchhhhhhccCCHH---HHHHHHHHHHHcCCcEEEEe
Q psy16778        360 LNIEELAEKTPQTTKWFQLYIYRDRE---ITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       360 ~s~e~i~~~~~~~~~w~Qly~~~~~~---~~~~~~~ra~~~G~~aivlT  405 (433)
                      ...+.|.....    | .+++..+..   ++.+.+++++++|+++|+|+
T Consensus       169 ~~~~~i~~vr~----~-~~Pv~vK~v~~g~~~e~a~~~~~~G~d~I~vs  212 (332)
T 1vcf_A          169 GLVERLAELLP----L-PFPVMVKEVGHGLSREAALALRDLPLAAVDVA  212 (332)
T ss_dssp             THHHHHHHHCS----C-SSCEEEECSSSCCCHHHHHHHTTSCCSEEECC
T ss_pred             HHHHHHHHHHc----C-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEeC
Confidence            12344433321    0 122222212   67788999999999999884

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.30  E-value=2.2e-12  Score=116.71  Aligned_cols=156  Identities=15%  Similarity=0.129  Sum_probs=84.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc--------cccCCCCCCc-CCh-------------hHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK--------MSAKQPLNDE-DRR-------------PWL   96 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~--------~~~~~~~~~~-~~~-------------~~~   96 (433)
                      .+|+|+|++||||||+++.|++ +|++++|+|.+........        ...|..+-.. ...             ...
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   81 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK   81 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence            5899999999999999999998 8999999998753210000        0012111110 000             001


Q ss_pred             HHHHHH--------HHHhhh--CCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHH
Q psy16778         97 NNINRI--------IHQLNV--DNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQ  166 (433)
Q Consensus        97 ~~~~~~--------~~~~~~--~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~  166 (433)
                      ..++..        +.....  .+..+|+++.-..+..   +.... ..+|||++|++++.+|+.+|.+.  ..+.+...
T Consensus        82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~---~~~~~-d~vi~l~~~~e~~~~Rl~~R~~~--~~e~~~~r  155 (206)
T 1jjv_A           82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENK---LTALC-DRILVVDVSPQTQLARSAQRDNN--NFEQIQRI  155 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTT---CGGGC-SEEEEEECCHHHHHHHHC-------CHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcC---cHhhC-CEEEEEECCHHHHHHHHHHcCCC--CHHHHHHH
Confidence            111111        111121  2334555553322221   22222 47999999999999999988542  33434444


Q ss_pred             HhhccCCCCCCCCCeEEEccCCCHH----HHHHHHhcCC
Q psy16778        167 FQTLEEPDPLVEPDVRTVSVNEPLE----GIVSKSAIMP  201 (433)
Q Consensus       167 ~~~~~~~~~~~~~~~~~Id~~~~~e----e~~~~i~~~l  201 (433)
                      +..........+.++++|+++.+++    ++.++|.+.+
T Consensus       156 ~~~q~~~~~~~~~ad~vIdn~~~~~~~~~~~~~~i~~~~  194 (206)
T 1jjv_A          156 MNSQVSQQERLKWADDVINNDAELAQNLPHLQQKVLELH  194 (206)
T ss_dssp             HHHSCCHHHHHHHCSEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCChHHHHHhCCEEEECCCCccccHHHHHHHHHHHH
Confidence            3322111000113679999988999    8888886654

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=99.29  E-value=8.4e-13  Score=129.82  Aligned_cols=133  Identities=29%  Similarity=0.453  Sum_probs=93.7

Q ss_pred             CCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEE-----------eeeecccCccccc--------
Q psy16778        289 ISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVL-----------TVDTNVFGTRYAD--------  349 (433)
Q Consensus       289 ~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~l-----------tvD~~~~G~r~~~--------  349 (433)
                      .+..++|+.|+...+...|-|+....+++.+...++.+    |..+.+           ++.+.++|.+...        
T Consensus        14 ~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~----f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pi~iAPma   89 (368)
T 2nli_A           14 VNTYDLEEEASKVVPHGGFNYIAGASGDEWTKRANDRA----WKHKLLYPRLAQDVEAPDTSTEILGHKIKAPFIMAPIA   89 (368)
T ss_dssp             SCSHHHHHHHHTTSCHHHHHHHHCCSBTSHHHHHHHHG----GGGEEECCCCCCCCSCCCCCEEETTEEESSSEEECCCS
T ss_pred             CCHHHHHHHHHHhCCHHHHhhcccCCCccHHHHHHHHH----HhheeeeccccCCCccCCcceEECCEecCCceeecchh
Confidence            46678999999888888999999999999987777655    555555           2335566664431        


Q ss_pred             ---------------cccccCC------CccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCC
Q psy16778        350 ---------------IRNKFNM------PSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDT  408 (433)
Q Consensus       350 ---------------~~~~~~~------~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~  408 (433)
                                     .+..+++      ..+.++|++.+..++.+.|||||+++|+..+.+.++||+++|+++|+||+|+
T Consensus        90 ~~g~~~~~~e~~la~aa~~~G~~~~~s~~~s~~le~v~~~~~~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~  169 (368)
T 2nli_A           90 AHGLAHTTKEAGTARAVSEFGTIMSISAYSGATFEEISEGLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADS  169 (368)
T ss_dssp             CGGGTCTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHHTTCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBC
T ss_pred             hccCCCcHHHHHHHHHHHHcCCCEEeechHhHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence                           1111111      1235789998765566789999999999999999999999999999999999


Q ss_pred             CCCCCchhhhhcCCCCC
Q psy16778        409 NVFGTRYADIRNKFNMP  425 (433)
Q Consensus       409 ~~~g~r~~~~r~~~~~~  425 (433)
                      |+.|+|++|.|++|.+|
T Consensus       170 p~~g~r~~d~~~~~~~p  186 (368)
T 2nli_A          170 TVSGNRDRDVKNKFVYP  186 (368)
T ss_dssp             C---CBC--------CC
T ss_pred             CcccchhHHHhhcccCc
Confidence            99999999999999888

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=99.28  E-value=3.2e-12  Score=131.99  Aligned_cols=161  Identities=19%  Similarity=0.246  Sum_probs=88.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhC------CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLG------VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg------~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (433)
                      ...+|++|+|+|+|||||||+++.|++.++      +.++++|++...     +..+..|.......+++.+..++..+.
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~-----l~~~l~f~~~~r~~~~r~i~~v~q~l~  439 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRH-----LSSELGFSKAHRDVNVRRIGFVASEIT  439 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHH-----TTSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHh-----hccccCCCHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999883      447899887421     122333443333344555555555554


Q ss_pred             hCCCcEEEEcCc-----ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC--HHhHHHHHhhccCCCCCCCCC
Q psy16778        108 VDNLTGVLVCSA-----LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP--ADLLESQFQTLEEPDPLVEPD  180 (433)
Q Consensus       108 ~~~~~~Vi~~~~-----~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~~~~~~~~~~~  180 (433)
                      ..+ .+++..+.     .....++.+...+++++|||+++.+++.+|.. | +....  ...+...+......+. -+.+
T Consensus       440 ~~~-~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~-r-~l~~~~~~~~i~~l~~~r~~~e~-P~~a  515 (552)
T 3cr8_A          440 KNR-GIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDR-K-GLYAKARAGLIPEFTGVSDPYEV-PETP  515 (552)
T ss_dssp             HTT-CEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-------------------------------CCCCC-CSSC
T ss_pred             hcC-CEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcc-c-cccccccHhHHHHHHhccccccC-CCCC
Confidence            455 45554332     22345666665433589999999999999964 2 22211  1234444433333221 1347


Q ss_pred             eEEEccC-CCHHHHHHHHhcCCCC
Q psy16778        181 VRTVSVN-EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       181 ~~~Id~~-~~~ee~~~~i~~~l~~  203 (433)
                      +++|+++ .++++++++|...+..
T Consensus       516 dl~Idt~~~s~~e~v~~Il~~L~~  539 (552)
T 3cr8_A          516 ELAIDTTGLAIDEAVQQILLKLEH  539 (552)
T ss_dssp             SEEECCSSCCHHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHh
Confidence            8999998 8999999999877643

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.28  E-value=2e-11  Score=110.36  Aligned_cols=162  Identities=10%  Similarity=0.080  Sum_probs=87.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCe--EEeCCCCCccccccc-ccc-CC--CCCCcCChhH-----HHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVK--FIDGDHLHPQSNIDK-MSA-KQ--PLNDEDRRPW-----LNNINRIIHQ  105 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~--~id~D~~~~~~~~~~-~~~-~~--~~~~~~~~~~-----~~~~~~~~~~  105 (433)
                      ++++|+|+|++||||||+++.|++.++..  ++..+.-.... ... ... +.  .+......-.     +..+...+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~   81 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDW-IHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILP   81 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCH-HHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHH-HHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999998763  44432211110 000 000 10  1111000000     0111223344


Q ss_pred             hhhCCCcEEEEcCcccH-----------HHHHHHHhcCC--eEEEEEEcCHHHHHHHHH-HhhC-CC-------------
Q psy16778        106 LNVDNLTGVLVCSALRR-----------NYRDIIRNNNR--VVFIYLKAEFGVILSRLQ-KRAE-HF-------------  157 (433)
Q Consensus       106 ~~~~~~~~Vi~~~~~~~-----------~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~-~R~~-~~-------------  157 (433)
                      .+..+..+|++......           .+...+.+...  ..+|||++|++++.+|+. +|.. ..             
T Consensus        82 ~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~~~d~  161 (213)
T 2plr_A           82 MLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSP  161 (213)
T ss_dssp             HHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCTTSCH
T ss_pred             HHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccccccccccccccccccch
Confidence            45567667777643221           22233333221  679999999999999998 7752 11             


Q ss_pred             CCH-HhHHHH-HhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        158 MPA-DLLESQ-FQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       158 ~~~-~~l~~~-~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ... ..+... ...+..... . ...++||++.+++++.++|.+.+
T Consensus       162 ~e~~~~~~~r~~~~~~~~~~-~-~~~~~Id~~~~~e~v~~~I~~~l  205 (213)
T 2plr_A          162 EEGFLKYQGLITEVYDKLVK-D-ENFIVIDGTKTPKEIQIQIRKFV  205 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-T-TTCEEEETTSCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHh-h-CCEEEEECCCCHHHHHHHHHHHH
Confidence            000 111111 111222211 1 15689999999999999887654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.27  E-value=2.4e-12  Score=117.55  Aligned_cols=160  Identities=19%  Similarity=0.210  Sum_probs=88.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccc------cccc--ccCCC-CCCc--CChhH---------
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN------IDKM--SAKQP-LNDE--DRRPW---------   95 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~------~~~~--~~~~~-~~~~--~~~~~---------   95 (433)
                      .++++|+|+|++||||||+++.|++ +|++++|+|.+.....      ...+  ..|.. +...  .....         
T Consensus         2 ~~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~   80 (218)
T 1vht_A            2 SLRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANP   80 (218)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCH
Confidence            3578999999999999999999998 9999999987643210      0000  00111 1100  00000         


Q ss_pred             --HHHHHHHHHH--------hhhC-CCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHH
Q psy16778         96 --LNNINRIIHQ--------LNVD-NLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLE  164 (433)
Q Consensus        96 --~~~~~~~~~~--------~~~~-~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~  164 (433)
                        ...++..+..        .... +..+++..+.......  +.... ..+|||++|++++.+|+.+|.+.  ..+.+.
T Consensus        81 ~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~~~l~~~~--~~~~~-d~vi~l~~~~e~~~~Rl~~R~~~--~~~~~~  155 (218)
T 1vht_A           81 EEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENS--LYKKA-NRVLVVDVSPETQLKRTMQRDDV--TREHVE  155 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECTTTTTTT--GGGGC-SEEEEEECCHHHHHHHHHHHHTC--CHHHHH
T ss_pred             HHHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEeeeeeccC--ccccC-CEEEEEECCHHHHHHHHHHcCCC--CHHHHH
Confidence              0111111111        1111 2234444333211111  11222 48999999999999999998642  334444


Q ss_pred             HHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        165 SQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ..+..+...+.+.+.++++|+++.+++++.++|.+.+
T Consensus       156 ~~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~I~~~l  192 (218)
T 1vht_A          156 QILAAQATREARLAVADDVIDNNGAPDAIASDVARLH  192 (218)
T ss_dssp             HHHHHSCCHHHHHHHCSEEEECSSCTTSHHHHHHHHH
T ss_pred             HHHHhcCChHHHHHhCCEEEECCCCHHHHHHHHHHHH
Confidence            4443332211111225689999888888888876654

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.27  E-value=3.8e-12  Score=131.66  Aligned_cols=160  Identities=21%  Similarity=0.178  Sum_probs=102.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN  110 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (433)
                      ..+.+|+|+|++||||||+++.|++.++     +.++|+|.+...     +..+..|.......+++.+...+...+..|
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~-----l~~~~~f~~~er~~~l~~i~~~~~~~l~~G  444 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTH-----LSRGLGFSKEDRITNILRVGFVASEIVKHN  444 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHH-----TCTTCCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhh-----hcccccccHHHHHHHHHHHHHHHHHHHhCC
Confidence            4578999999999999999999999885     378888876422     122333443333333444445566666778


Q ss_pred             CcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccC
Q psy16778        111 LTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVN  187 (433)
Q Consensus       111 ~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~  187 (433)
                      ..+|+++....+..++.+++...   +.+|||++|.+++.+|+.++.-.......++.+....+..+. .+.++++||++
T Consensus       445 ~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~-~~~adivIDts  523 (546)
T 2gks_A          445 GVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEP-PVAPEVRVDTT  523 (546)
T ss_dssp             CEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBCCCC-CSSCSEEEETT
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhcccc-ccCCcEEEECC
Confidence            78888876666666666665432   489999999999999985211000011222322222222221 13467999997


Q ss_pred             -CCHHHHHHHHhcCC
Q psy16778        188 -EPLEGIVSKSAIMP  201 (433)
Q Consensus       188 -~~~ee~~~~i~~~l  201 (433)
                       .++++++++|.+.+
T Consensus       524 ~~s~eev~~~I~~~L  538 (546)
T 2gks_A          524 KLTPEESALKILEFL  538 (546)
T ss_dssp             TSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence             89999999997765

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=99.27  E-value=3.9e-11  Score=108.54  Aligned_cols=165  Identities=15%  Similarity=0.121  Sum_probs=91.6

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCCcccccccc-ccCCCCCC-c--CC-hhHHHHHHHHHHHh
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLHPQSNIDKM-SAKQPLND-E--DR-RPWLNNINRIIHQL  106 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~~~~~~~~~-~~~~~~~~-~--~~-~~~~~~~~~~~~~~  106 (433)
                      .+.+++.+|+|+|++||||||+++.|++.+ ++.+++.|.+......... ..+....+ .  .. ......+...+...
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~   95 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESA   95 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCC
Confidence            456788999999999999999999999988 8999999998643211110 11111000 0  00 11112222222211


Q ss_pred             h----------hCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC-HHhHH-H---H----H
Q psy16778        107 N----------VDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP-ADLLE-S---Q----F  167 (433)
Q Consensus       107 ~----------~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~-~~~l~-~---~----~  167 (433)
                      .          .....+||..+.....+.. +.+.. ..++|++++++++.+|+.+|...... ...+. .   .    .
T Consensus        96 ~~~~~~~~~~~~~~~~~vi~eg~~~~~~~~-~~~~~-d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~  173 (207)
T 2qt1_A           96 RHSVVSTDQESAEEIPILIIEGFLLFNYKP-LDTIW-NRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYR  173 (207)
T ss_dssp             TTSSCCC-----CCCCEEEEECTTCTTCGG-GTTTC-SEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHH
T ss_pred             CCCCcCCCeeecCCCCEEEEeehHHcCcHH-HHHhc-CeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHH
Confidence            0          0112344444432211111 11221 58999999999999999887521111 11122 1   1    1


Q ss_pred             hhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        168 QTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       168 ~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                      +.+....    ...++||++.+++++.++|.+.+..
T Consensus       174 ~~~~~~~----~~v~~Id~~~~~eev~~~I~~~l~~  205 (207)
T 2qt1_A          174 QEMQDIT----WEVVYLDGTKSEEDLFLQVYEDLIQ  205 (207)
T ss_dssp             HHGGGCS----SCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred             HHHHhcC----CeEEEecCCCCHHHHHHHHHHHHHh
Confidence            1222221    1346689999999999998876543

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.26  E-value=2.4e-12  Score=116.18  Aligned_cols=157  Identities=19%  Similarity=0.215  Sum_probs=89.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------ccc--ccCCC-CCC--cCCh-----------hHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------DKM--SAKQP-LND--EDRR-----------PWL   96 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~~~--~~~~~-~~~--~~~~-----------~~~   96 (433)
                      ++|+|+|++||||||+++.|++ +|+.++++|.+......      ..+  ..|.. +..  ....           ...
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~   80 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL   80 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence            4899999999999999999999 99999999987532110      000  01111 110  0000           001


Q ss_pred             HHHHHHHH--------Hhh--hCC-CcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHH
Q psy16778         97 NNINRIIH--------QLN--VDN-LTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLES  165 (433)
Q Consensus        97 ~~~~~~~~--------~~~--~~~-~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~  165 (433)
                      ..+.....        ...  ..+ ..+|+++....+....   ... ..+|||++|++++.+|+.+| +  ...+.+..
T Consensus        81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~~~---~~~-~~~i~l~~~~e~~~~Rl~~R-~--~~~~~~~~  153 (204)
T 2if2_A           81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASLLVEKGTY---KNY-DKLIVVYAPYEVCKERAIKR-G--MSEEDFER  153 (204)
T ss_dssp             HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTTCG---GGS-SEEEEECCCHHHHHHHHHHT-C--CCHHHHHH
T ss_pred             HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccccccCCch---hhC-CEEEEEECCHHHHHHHHHHc-C--CCHHHHHH
Confidence            11111111        111  122 3556655433322111   111 47999999999999999988 3  33344444


Q ss_pred             HHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        166 QFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                      .+..+.....+.+.++++|+++.+++++.++|.+.+.+
T Consensus       154 ~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~  191 (204)
T 2if2_A          154 RWKKQMPIEEKVKYADYVIDNSGSIEETYKQVKKVYEE  191 (204)
T ss_dssp             HHTTSCCHHHHGGGCSEECCCSSCHHHHHHHHHHHHHT
T ss_pred             HHHhCCChhHHHhcCCEEEECCCCHHHHHHHHHHHHHH
Confidence            44443321111233578999989999999888776543

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.25  E-value=1e-11  Score=118.04  Aligned_cols=160  Identities=18%  Similarity=0.121  Sum_probs=89.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccc------cccc--ccCCC-----------------CCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN------IDKM--SAKQP-----------------LND   89 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~------~~~~--~~~~~-----------------~~~   89 (433)
                      ..++++|+|+|++||||||+++.|+ .+|+.++++|.+.....      ...+  ..|..                 |..
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~  150 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN  150 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence            4556899999999999999999999 58999999998732100      0000  00110                 111


Q ss_pred             cCChhHHH---------HHHHHHHHhhhCCC-cEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC
Q psy16778         90 EDRRPWLN---------NINRIIHQLNVDNL-TGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP  159 (433)
Q Consensus        90 ~~~~~~~~---------~~~~~~~~~~~~~~-~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~  159 (433)
                      .....+++         .+...+......+. .+|+++....+.   .+.... ..+|||++|++++.+|+.+|.+.  .
T Consensus       151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~~~~-d~vI~l~a~~ev~~~Rl~~R~g~--s  224 (281)
T 2f6r_A          151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQSMV-HEVWTVVIPETEAVRRIVERDGL--S  224 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGGGGC-SEEEEEECCHHHHHHHHHHHHCC--C
T ss_pred             HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chHHhC-CEEEEEcCCHHHHHHHHHHcCCC--C
Confidence            00001010         11122222222333 344454432221   111222 48999999999999999998642  3


Q ss_pred             HHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        160 ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       160 ~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      .+.+...+..+.....+.+.++++|+++.+++++..+|.+.+
T Consensus       225 ~e~~~~ri~~q~~~~~~~~~AD~vIdn~~s~eel~~~I~~~l  266 (281)
T 2f6r_A          225 EAAAQSRLQSQMSGQQLVEQSNVVLSTLWESHVTQSQVEKAW  266 (281)
T ss_dssp             HHHHHHHHHTSCCHHHHHHTCSEEEECSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHhhHhhCCEEEECCCCHHHHHHHHHHHH
Confidence            333333333331110001236789999899999988886654

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=99.24  E-value=4.1e-12  Score=125.62  Aligned_cols=133  Identities=29%  Similarity=0.464  Sum_probs=101.2

Q ss_pred             CCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEE-----------eeeecccCccccc---------
Q psy16778        290 STTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVL-----------TVDTNVFGTRYAD---------  349 (433)
Q Consensus       290 s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~l-----------tvD~~~~G~r~~~---------  349 (433)
                      +..++|+.|+...+...|-|+..+.+++.+...++.+    |..+.+           ++.+.++|.+.+.         
T Consensus         7 ~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~----f~~i~l~pr~L~~~~~~d~st~i~G~~l~~Pv~iap~~~   82 (380)
T 1p4c_A            7 NVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDV----FQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGL   82 (380)
T ss_dssp             SHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHG----GGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSC
T ss_pred             CHHHHHHHHHHhCCHHHHHHhCCCCCccHHHHHHHHH----HhheeeeccccCCCccCcceeEECCeecCCceEecCccc
Confidence            4568899998877788999999999999987666555    555555           2234556654431         


Q ss_pred             --------------cccccCC------CccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCC
Q psy16778        350 --------------IRNKFNM------PSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN  409 (433)
Q Consensus       350 --------------~~~~~~~------~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~  409 (433)
                                    .+..++.      -+.+++|++... ++.+.|||+|+++ +..+.+++++|+++|+++++||||+|
T Consensus        83 ~~~~~~~~~~~~a~aa~~~G~~~~vss~s~~~le~i~~~-~~~~~~fQly~~~-~~~~~~~i~~a~~aG~~al~vTvd~p  160 (380)
T 1p4c_A           83 NGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQ-CDGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVA  160 (380)
T ss_dssp             GGGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHH-CCSCEEEEECCSS-HHHHHHHHHHHHHTTCCEEEEECSCS
T ss_pred             cccCCCcHHHHHHHHHHHcCCCeecCccccCCHHHHHhc-cCCCeEEEEEech-HHHHHHHHHHHHHcCCCEEEEeecCc
Confidence                          0111111      134468998775 3457899999999 99999999999999999999999999


Q ss_pred             CCCCchhhhhcCCCCCCCC
Q psy16778        410 VFGTRYADIRNKFNMPSHL  428 (433)
Q Consensus       410 ~~g~r~~~~r~~~~~~~~~  428 (433)
                      +.|+|++|+|+++.+|..+
T Consensus       161 ~~g~r~~d~~~g~~~~~~~  179 (380)
T 1p4c_A          161 VNGYRERDLHNRFKIPPFL  179 (380)
T ss_dssp             SCCCCHHHHHHTCCCCTTC
T ss_pred             cccchhHHHhcCCCCcccc
Confidence            9999999999999877543

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.24  E-value=2.7e-12  Score=133.41  Aligned_cols=159  Identities=15%  Similarity=0.205  Sum_probs=98.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC------CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG------VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNV  108 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg------~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (433)
                      ..++++|+|+|+|||||||+++.|+++++      +.++|+|.+...     +..+..|........++.+..++..+..
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~-----l~~~~~f~~~er~~~i~ri~~v~~~~~~  467 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHE-----LSSELGFTREDRHTNIQRIAFVATELTR  467 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHH-----TCTTCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHH-----hccccCCChhHHHHHHHHHHHHHHHHHh
Confidence            45678999999999999999999999985      357777776432     2223344443334445555566667777


Q ss_pred             CCCcEEEEcCcccHHHHH----HHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCH---HhHHHHHhhccCCCCCCCCCe
Q psy16778        109 DNLTGVLVCSALRRNYRD----IIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPA---DLLESQFQTLEEPDPLVEPDV  181 (433)
Q Consensus       109 ~~~~~Vi~~~~~~~~~~~----~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~---~~l~~~~~~~~~~~~~~~~~~  181 (433)
                      ++..+|++........|+    .+.+.+.+.+|||++|++++.+|..+.-   ...   ..++..... ..+++..+.++
T Consensus       468 ~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l---~~~~~~~~i~~~~~~-r~~~~~p~~~d  543 (573)
T 1m8p_A          468 AGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGI---YAAARRGEIKGFTGV-DDPYETPEKAD  543 (573)
T ss_dssp             TTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCH---HHHHHTTSSSSCBTT-TBCCCCCSSCS
T ss_pred             CCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccc---hhhhhHHHHHHHHhc-cccccccCCCC
Confidence            776666665443344443    3433212589999999999999952110   000   001111111 11221112467


Q ss_pred             EEEccC-CCHHHHHHHHhcCCC
Q psy16778        182 RTVSVN-EPLEGIVSKSAIMPP  202 (433)
Q Consensus       182 ~~Id~~-~~~ee~~~~i~~~l~  202 (433)
                      ++||++ .++++++++|.+.+.
T Consensus       544 l~IDts~~s~eevv~~Il~~l~  565 (573)
T 1m8p_A          544 LVVDFSKQSVRSIVHEIILVLE  565 (573)
T ss_dssp             EEECTTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCHHHHHHHHHHHHH
Confidence            999998 799999999987764

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=99.24  E-value=6.4e-12  Score=123.90  Aligned_cols=134  Identities=30%  Similarity=0.499  Sum_probs=106.3

Q ss_pred             CCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEE-----------eeeecccCccccc---------
Q psy16778        290 STTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVL-----------TVDTNVFGTRYAD---------  349 (433)
Q Consensus       290 s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~l-----------tvD~~~~G~r~~~---------  349 (433)
                      +..++|+.|....+...|-|+..+.+++.+...++.+    |..+.+           ++.+.++|.+...         
T Consensus         6 ~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~N~~~----f~~i~l~pr~l~~~~~~d~~t~i~G~~~~~Pi~iAPmg~   81 (370)
T 1gox_A            6 NVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNA----FSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAM   81 (370)
T ss_dssp             STTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHG----GGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSC
T ss_pred             CHHHHHHHHHHhCCHHHHhhhCCCCCccHHHHHHHHH----HhhheeeccccCCCCCCCCceEECCcccCCceeEcccch
Confidence            6779999998887778899999999999997777655    555555           2335566654431         


Q ss_pred             --------------cccccCC------CccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCC
Q psy16778        350 --------------IRNKFNM------PSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN  409 (433)
Q Consensus       350 --------------~~~~~~~------~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~  409 (433)
                                    .+..++.      ..+.++|++.+..+ .+.|||||+..|+..+.+.+++|+++|+++|+||+|+|
T Consensus        82 ~~l~~~~~e~a~a~aa~~~G~~~~~s~~~~~~ieev~~~~~-~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p  160 (370)
T 1gox_A           82 QKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP  160 (370)
T ss_dssp             GGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCC-CCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCS
T ss_pred             hhhccchHHHHHHHHHHHcCCCeeccCCCCCCHHHHHhhcC-CCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCC
Confidence                          1111111      13557899988766 67899999999999999999999999999999999999


Q ss_pred             CCCCchhhhhcCCCCCCCC
Q psy16778        410 VFGTRYADIRNKFNMPSHL  428 (433)
Q Consensus       410 ~~g~r~~~~r~~~~~~~~~  428 (433)
                      +.|+|++|.|++|.+|.++
T Consensus       161 ~~g~r~~d~r~~~~~p~~~  179 (370)
T 1gox_A          161 RLGRREADIKNRFVLPPFL  179 (370)
T ss_dssp             SCCCCHHHHHTTCCCCTTC
T ss_pred             cccccHHHHHhccCCCccc
Confidence            9999999999999988775

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=99.23  E-value=6.1e-11  Score=109.66  Aligned_cols=159  Identities=13%  Similarity=0.120  Sum_probs=90.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCC--------------------------
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPL--------------------------   87 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~--------------------------   87 (433)
                      ...++.+|+|+|++||||||+++.|++.+|++++|+|.+........+..|..+                          
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~   91 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQL   91 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEE
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccce
Confidence            346778999999999999999999999999999999988643111000111110                          


Q ss_pred             ---------CCcCChhHHH-------------HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHH
Q psy16778         88 ---------NDEDRRPWLN-------------NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGV  145 (433)
Q Consensus        88 ---------~~~~~~~~~~-------------~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~  145 (433)
                               ..-.....+.             .+..... ....+.++|+++.....   ..+...  ..+|||++++++
T Consensus        92 i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~-~~~~~~~~v~~g~~~~~---~~l~~~--d~vi~L~a~~e~  165 (236)
T 1q3t_A           92 VFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQ-EIAQQGGIVMDGRDIGT---VVLPQA--ELKIFLVASVDE  165 (236)
T ss_dssp             EEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHH-HHHTTSCEEEECSSCSS---SSGGGC--SEEEEEECCHHH
T ss_pred             EeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHH-HhcccCCEEEECCcchh---hhccCC--CEEEEEECCHHH
Confidence                     0000001111             1111111 12344467776432110   112222  489999999999


Q ss_pred             HHHHH----HHhhCCCCCHHhHHHHHhhc---------cCCCCCCCCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778        146 ILSRL----QKRAEHFMPADLLESQFQTL---------EEPDPLVEPDVRTVSVN-EPLEGIVSKSAIMP  201 (433)
Q Consensus       146 l~~Rl----~~R~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l  201 (433)
                      +.+|+    .+|+ .....+.+...+..+         .+++  ...++++|+++ .+++++.++|.+.+
T Consensus       166 ~~~R~~~~~~~R~-~~~~~e~~~~~i~~R~~~~~~~~~~p~~--~~~d~~vId~~~~s~eev~~~I~~~l  232 (236)
T 1q3t_A          166 RAERRYKENIAKG-IETDLETLKKEIAARDYKDSHRETSPLK--QAEDAVYLDTTGLNIQEVVEKIKAEA  232 (236)
T ss_dssp             HHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHTTCSSSCCS--CCTTCEEEECSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CCCCHHHHHHHHHHHhhhhhhccccccc--ccCCEEEEcCCCCCHHHHHHHHHHHH
Confidence            99997    3443 222333333333321         1232  33244999998 69999999887653

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.23  E-value=1.3e-11  Score=109.65  Aligned_cols=158  Identities=15%  Similarity=0.127  Sum_probs=85.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCccccccccccCC--CCCCcC--ChhHHHHHHH----HH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHPQSNIDKMSAKQ--PLNDED--RRPWLNNINR----II  103 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~----~~  103 (433)
                      ++++|+|+|++||||||+++.|++++|     +.+++.|++......   ..+.  .+.+..  .......++.    .+
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   78 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK---EENLVSDRDQMRKMDPETQKRIQKMAGRKI   78 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHH---HTTSCSSGGGGSSCCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHh---ccCCCCCHHHHhcCCHHHHHHHHHHHHHHH
Confidence            367999999999999999999999998     999998866432110   0111  111100  1111222222    23


Q ss_pred             HHhhhCCCcEEEEcCccc--H-HH-----HHHHHhcCCeEEEEEEcCHHHHHH-HHHH--hhCCCCCHHhHH------HH
Q psy16778        104 HQLNVDNLTGVLVCSALR--R-NY-----RDIIRNNNRVVFIYLKAEFGVILS-RLQK--RAEHFMPADLLE------SQ  166 (433)
Q Consensus       104 ~~~~~~~~~~Vi~~~~~~--~-~~-----~~~l~~~~~~~vv~L~~~~e~l~~-Rl~~--R~~~~~~~~~l~------~~  166 (433)
                      ... ..+..+|+++....  . .+     ...+++....++|||++|++++.+ |+.+  |+......+.+.      ..
T Consensus        79 ~~~-~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~~  157 (192)
T 1kht_A           79 AEM-AKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRC  157 (192)
T ss_dssp             HHH-HTTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHH
T ss_pred             Hhh-ccCCeEEEccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHHH
Confidence            232 24457888765421  0 00     122333212469999999999996 9977  643223322211      11


Q ss_pred             HhhccCCCCCCCCCeEEEccC-CCHHHHHHHHhcC
Q psy16778        167 FQTLEEPDPLVEPDVRTVSVN-EPLEGIVSKSAIM  200 (433)
Q Consensus       167 ~~~~~~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~  200 (433)
                      +......+  .....++|++. .+++++++.|.+.
T Consensus       158 ~~~~~~~~--~~~~~~~i~~~~~~~e~~~~~i~~~  190 (192)
T 1kht_A          158 AAMSYGVL--TGATVKIVQNRNGLLDQAVEELTNV  190 (192)
T ss_dssp             HHHHHHHH--HCCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHh--cCCcEEEEeCCCCCHHHHHHHHHHH
Confidence            11111111  11234555443 5699999988654

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=99.23  E-value=2e-11  Score=111.29  Aligned_cols=158  Identities=13%  Similarity=0.116  Sum_probs=90.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc----ccc--------------------------ccCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI----DKM--------------------------SAKQP   86 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~----~~~--------------------------~~~~~   86 (433)
                      ++++|+|+|++||||||+++.|++.+|+.++|.|.+.+...+    .+.                          ..|..
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~   81 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNED   81 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCcc
Confidence            357899999999999999999999999999999988642100    000                          01111


Q ss_pred             CCCcCChhHHHH----------HHHHHH---HhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778         87 LNDEDRRPWLNN----------INRIIH---QLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR  153 (433)
Q Consensus        87 ~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R  153 (433)
                      .........+..          +.+.+.   .....+.++|+++....   ...+...  ..+|||++|++++.+|+.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~~~~---~~~~~~~--~~vi~l~a~~e~~~~R~~~~  156 (219)
T 2h92_A           82 VTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIG---TVVLPDA--DLKVYMIASVEERAERRYKD  156 (219)
T ss_dssp             CGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEESSCC---CCCCTTC--SEEEEEECCHHHHHHHHHHH
T ss_pred             chhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcCCcc---ceecCCC--CEEEEEECCHHHHHHHHHHH
Confidence            101011111110          111111   12234446777753210   0112222  47999999999999997532


Q ss_pred             ---hCCCCCHHhHHHHHhhcc---------CCCCCCCCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778        154 ---AEHFMPADLLESQFQTLE---------EPDPLVEPDVRTVSVN-EPLEGIVSKSAIMP  201 (433)
Q Consensus       154 ---~~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l  201 (433)
                         ++.....+.+...+..++         +.+  ...++++|+++ .++++++++|.+.+
T Consensus       157 ~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~--~~~d~~~Id~~~~~~ee~~~~I~~~l  215 (219)
T 2h92_A          157 NQLRGIESNFEDLKRDIEARDQYDMNREISPLR--KADDAVTLDTTGKSIEEVTDEILAMV  215 (219)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSC--CCTTCEEEECTTCCHHHHHHHHHHHH
T ss_pred             HHhcCcccCHHHHHHHHHHHHHhhhhhhccccc--cCCCeEEEECCCCCHHHHHHHHHHHH
Confidence               222224444444444332         332  33345999998 69999999987654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.22  E-value=4.8e-11  Score=111.63  Aligned_cols=121  Identities=13%  Similarity=0.147  Sum_probs=78.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccc---cccccCCCCCCcCChhHHHHHHHHHHHhhh
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNI---DKMSAKQPLNDEDRRPWLNNINRIIHQLNV  108 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (433)
                      ...++.+|+|+|+|||||||+++.|++.++  +.++++|.+......   .....|............+.+...+..+..
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  107 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSS  107 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHh
Confidence            466789999999999999999999999986  678999987532110   001112211110000011223444555566


Q ss_pred             CCCcEEEEcCccc----HHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhh
Q psy16778        109 DNLTGVLVCSALR----RNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus       109 ~~~~~Vi~~~~~~----~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      .+.++||+++...    ..+.+.+++.+. ..++|+.+|++++.+|+.+|.
T Consensus       108 ~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~  158 (253)
T 2p5t_B          108 LGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRY  158 (253)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred             cCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence            7778999987643    334556665543 556788999999999998874

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.20  E-value=5e-12  Score=113.67  Aligned_cols=160  Identities=14%  Similarity=0.115  Sum_probs=87.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccc-c--cccccCC--CCC-CcCChhHH-----------HH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN-I--DKMSAKQ--PLN-DEDRRPWL-----------NN   98 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~-~--~~~~~~~--~~~-~~~~~~~~-----------~~   98 (433)
                      +++++|+|+|++||||||+++.|++. |++++|+|.+..... .  ......+  .+. ..-....+           ..
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~~   84 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKA   84 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHHH
Confidence            45689999999999999999999998 999999998753211 0  0000000  000 00000000           11


Q ss_pred             HHH---------HHHHhhhCCCcEEEEcCcc-cHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHh
Q psy16778         99 INR---------IIHQLNVDNLTGVLVCSAL-RRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQ  168 (433)
Q Consensus        99 ~~~---------~~~~~~~~~~~~Vi~~~~~-~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~  168 (433)
                      ++.         .+......|..+||..+.. .+..   +.... ..+|||+++++++.+|+.+|.+.  ..+.+...+.
T Consensus        85 l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~~l~~~~---~~~~~-d~~i~l~~~~e~~~~R~~~R~~~--~~~~~~~~i~  158 (203)
T 1uf9_A           85 LEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKG---WEGRL-HGTLLVAAPLEERVRRVMARSGL--SREEVLARER  158 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTTT---CGGGS-SEEEEECCCHHHHHHHHHTTTCC--TTHHHHHHHT
T ss_pred             HHHHhChHHHHHHHHHhhhcCCCEEEEEecceeccC---chhhC-CEEEEEECCHHHHHHHHHHcCCC--CHHHHHHHHH
Confidence            111         1111112333444444432 2211   11111 48999999999999999988532  2222333332


Q ss_pred             hccCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        169 TLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       169 ~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      .+...+.+...++++|+++.+++++.++|.+.+.
T Consensus       159 ~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~~~  192 (203)
T 1uf9_A          159 AQMPEEEKRKRATWVLENTGSLEDLERALKAVLA  192 (203)
T ss_dssp             TSCCHHHHHHHCSEEECCSSHHHHHHHHHHHHHH
T ss_pred             HCCChhHHHHhCCEEEECCCCHHHHHHHHHHHHH
Confidence            2211110012256889988889999888876653

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.19  E-value=2.2e-11  Score=109.48  Aligned_cols=154  Identities=16%  Similarity=0.225  Sum_probs=83.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHH---HHH---HHHHHhhhCCCc
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN---NIN---RIIHQLNVDNLT  112 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~  112 (433)
                      ++|+|+|++||||||+++.|+++++..+++.... ......    .+ +.+.....+..   ...   ..+.....++ .
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~-~~~~~~----~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~   73 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPVE-ENPYFE----QY-YKDLKKTVFKMQIYMLTARSKQLKQAKNLE-N   73 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCGG-GCTTHH----HH-TTCHHHHHHHHHHHHHHHHHHHHC-------C
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCCcEEccccc-ccHHHH----HH-HhCccccchhHHHHHHHHHHHHHHHhhccC-C
Confidence            4799999999999999999999999987752110 000000    00 11111111110   111   1122223344 4


Q ss_pred             EEEEcCcccH-------------------HHHHHHH----hc-------CC-eEEEEEEcCHHHHHHHHHHhhCCCCC--
Q psy16778        113 GVLVCSALRR-------------------NYRDIIR----NN-------NR-VVFIYLKAEFGVILSRLQKRAEHFMP--  159 (433)
Q Consensus       113 ~Vi~~~~~~~-------------------~~~~~l~----~~-------~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~--  159 (433)
                      +|++.+....                   .+.+.+.    ..       .. ..+|||++|++++.+|+.+|+ ++..  
T Consensus        74 vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~-r~~~~~  152 (205)
T 2jaq_A           74 IIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRG-RSEELL  152 (205)
T ss_dssp             EEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHT-CHHHHH
T ss_pred             EEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcC-Chhhhc
Confidence            7777654211                   0111111    11       12 689999999999999998874 2211  


Q ss_pred             -----HHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        160 -----ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       160 -----~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                           ...+..++..+.+.+. ...++++|+++.+++++.++|.+.+
T Consensus       153 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~Id~~~~~~~v~~~I~~~l  198 (205)
T 2jaq_A          153 IGEEYWETLNKNYEEFYKQNV-YDFPFFVVDAELDVKTQIELIMNKL  198 (205)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHT-TTSCEEEEETTSCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHcc-ccCcEEEEECCCCHHHHHHHHHHHH
Confidence                 1223334443322221 1347899999999999999887655

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.19  E-value=2e-10  Score=105.75  Aligned_cols=166  Identities=16%  Similarity=0.094  Sum_probs=90.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCCCcCChhHHH-------HH---HHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN-------NI---NRI  102 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~  102 (433)
                      +.+|+.|+|.|++||||||+++.|++.++  ..++.+..-.......... .+..+.....+...       +.   .+.
T Consensus        23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~-~~~~~~~~~~~~~~~ll~~a~r~~~~~~~  101 (229)
T 4eaq_A           23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIR-KIVLEGNDMDIRTEAMLFAASRREHLVLK  101 (229)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHH-HHTTC---CCHHHHHHHHHHHHHHHCCCC
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHH-HHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999999986  4555443221110000000 01111000001100       11   111


Q ss_pred             HHHhhhCCCcEEEE----------cCc--ccHHHHHHHHhc----CC-eEEEEEEcCHHHHHHHHHHhhCC---CC--CH
Q psy16778        103 IHQLNVDNLTGVLV----------CSA--LRRNYRDIIRNN----NR-VVFIYLKAEFGVILSRLQKRAEH---FM--PA  160 (433)
Q Consensus       103 ~~~~~~~~~~~Vi~----------~~~--~~~~~~~~l~~~----~~-~~vv~L~~~~e~l~~Rl~~R~~~---~~--~~  160 (433)
                      +...+..+..+|++          +.+  ....+.+.+.+.    .. ..+|||++|++++.+|+.+|+..   ..  ..
T Consensus       102 i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~~  181 (229)
T 4eaq_A          102 VIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDL  181 (229)
T ss_dssp             CHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHHH
T ss_pred             HHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhhH
Confidence            23445567667777          332  334443333321    12 78999999999999999998532   11  11


Q ss_pred             HhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        161 DLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      +.+++..+.+.++........++||++.+++++.++|.+.+
T Consensus       182 ~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l  222 (229)
T 4eaq_A          182 KFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTI  222 (229)
T ss_dssp             HHHHHHHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHH
Confidence            22233323232222111235688999999999999887654

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=99.19  E-value=3e-12  Score=130.93  Aligned_cols=142  Identities=28%  Similarity=0.416  Sum_probs=107.3

Q ss_pred             CCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEE-----------eeeecccCcccc-
Q psy16778        281 GGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVL-----------TVDTNVFGTRYA-  348 (433)
Q Consensus       281 g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~l-----------tvD~~~~G~r~~-  348 (433)
                      ..|-+....+..+||++|....+...|-|+....++|.+...++.+    |..+.+           ++.+.++|.+.. 
T Consensus       115 ~~p~~~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~e~t~~~N~~a----f~~i~l~pr~L~dv~~~d~st~i~G~~l~~  190 (511)
T 1kbi_A          115 LLPPLDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNA----YHRIFFKPKILVDVRKVDISTDMLGSHVDV  190 (511)
T ss_dssp             TCCCGGGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHG----GGGCEECCCCSCCCSSCBCCEEETTEEESS
T ss_pred             CCCCccccCCHHHHHHHHHhhCCHHHhhhccCCCCchhHHHHHHHH----hhhhccccccccCcccccCccccCCccCCC
Confidence            3444333456778999998877778999999999999987777655    444444           233555554332 


Q ss_pred             -----------------------ccccc--cCCC------ccchHHHHHhhC--CCcchhhhhhccCCHHHHHHHHHHHH
Q psy16778        349 -----------------------DIRNK--FNMP------SHLNIEELAEKT--PQTTKWFQLYIYRDREITKSLVQRAE  395 (433)
Q Consensus       349 -----------------------~~~~~--~~~~------~~~s~e~i~~~~--~~~~~w~Qly~~~~~~~~~~~~~ra~  395 (433)
                                             ..+..  ++++      ++.|+|++.+..  +..+.|||||+.+|+..+.+.++||+
T Consensus       191 Pi~iAPma~~~l~~~~~~e~alaraA~~~~~G~~~~~s~~a~~s~e~v~~~~~~~~~~~~~QLy~~~d~~~~~~~~~rae  270 (511)
T 1kbi_A          191 PFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVE  270 (511)
T ss_dssp             SEEECCCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHH
T ss_pred             CeEeccchhccccChhhHHHHHHHHHHHhCCCeeEEeCCcccCCHHHHHhhcCCCCCCeEEEEeecCCHHHHHHHHHHHH
Confidence                                   11122  3332      356899998765  35678999999999999999999999


Q ss_pred             HcCCcEEEEecCCCCCCCchhhhhcCCCCCC
Q psy16778        396 KAGYKALVLTVDTNVFGTRYADIRNKFNMPS  426 (433)
Q Consensus       396 ~~G~~aivlTvD~~~~g~r~~~~r~~~~~~~  426 (433)
                      ++||++|+||||+|+.|+|+++.|++|..|.
T Consensus       271 ~aG~~al~itvd~p~~g~R~~~~r~g~~~p~  301 (511)
T 1kbi_A          271 KLGVKALFVTVDAPSLGQREKDMKLKFSNTK  301 (511)
T ss_dssp             HHTCSCEEEECSCSSCCCCHHHHHHHHTTCC
T ss_pred             HcCCCEEEEeCCCCCccccHHHHhccCCCCc
Confidence            9999999999999999999999999988774

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.16  E-value=1.5e-10  Score=104.06  Aligned_cols=159  Identities=14%  Similarity=0.101  Sum_probs=88.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCCCCc-cccc---cc-cccCCCCCCcCChhHH---HHH--HHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDHLHP-QSNI---DK-MSAKQPLNDEDRRPWL---NNI--NRIIH  104 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~~~~-~~~~---~~-~~~~~~~~~~~~~~~~---~~~--~~~~~  104 (433)
                      ++|++|+|+|++||||||+++.|++++ |+.+++.+.... ....   .. ...+..+.... ...+   ...  ...+.
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~-~~~l~~~~r~~~~~~i~   80 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHI-VNLLFCANRWEFASFIQ   80 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHH-HHHHHHHHHHTTHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHHHHHHHH
Confidence            468899999999999999999999998 688888765431 1100   00 00111111100 0000   000  02234


Q ss_pred             HhhhCCCcEEEEcCc-----------ccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCC-CCCHH---hHHHHH
Q psy16778        105 QLNVDNLTGVLVCSA-----------LRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRAEH-FMPAD---LLESQF  167 (433)
Q Consensus       105 ~~~~~~~~~Vi~~~~-----------~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~-~~~~~---~l~~~~  167 (433)
                      ..+..+..+|++...           ....+...+.... . ..+|||++|++++.+   +|+.. ....+   .+...+
T Consensus        81 ~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d~~e~~~~~~rl~~~y  157 (204)
T 2v54_A           81 EQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEEIYEDVTFQQKVLQEY  157 (204)
T ss_dssp             HHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSSTTCCSHHHHHHHHHH
T ss_pred             HHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCcccccHHHHHHHHHHHH
Confidence            444566566666432           1123333333221 1 689999999999887   45321 11112   233334


Q ss_pred             hhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        168 QTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       168 ~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ......+   ....++||++.+++++.++|.+.+
T Consensus       158 ~~~~~~~---~~~~~~Id~~~~~~~v~~~i~~~l  188 (204)
T 2v54_A          158 KKMIEEG---DIHWQIISSEFEEDVKKELIKNIV  188 (204)
T ss_dssp             HHHHTTC---SSCEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHHHhC---CCcEEEEECCCCHHHHHHHHHHHH
Confidence            4333322   125688998899999998887665

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.16  E-value=1.2e-10  Score=105.08  Aligned_cols=161  Identities=12%  Similarity=0.103  Sum_probs=85.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC-eEEeCCCCCccccccccccC--CCCCCc-----------------CCh
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGV-KFIDGDHLHPQSNIDKMSAK--QPLNDE-----------------DRR   93 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~-~~id~D~~~~~~~~~~~~~~--~~~~~~-----------------~~~   93 (433)
                      .+.++++|+|+|+|||||||+++.|++.++- .........++... ....|  +.|-..                 ...
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~-~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKRE-KETNGVDYYFVDKDDFERKLKEGQFLEFDKYAN   86 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCT-TCCBTTTEEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCC-CCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCC
Confidence            3778899999999999999999999998842 22222111111000 00000  000000                 000


Q ss_pred             hHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcC---CeEEEEEE-cCHHHHHHHHHHhhCCCCCHHhHHHHHhh
Q psy16778         94 PWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN---RVVFIYLK-AEFGVILSRLQKRAEHFMPADLLESQFQT  169 (433)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~---~~~vv~L~-~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~  169 (433)
                      ..+....+.+...+..|..+|+++....  .+ .+++..   ...+|||+ +|++++.+|+.+|+..  ..+.+...+..
T Consensus        87 ~~~~~~~~~i~~~l~~g~~vi~d~~~~~--~~-~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~--~~~~i~~rl~~  161 (204)
T 2qor_A           87 NFYGTLKSEYDLAVGEGKICLFEMNING--VK-QLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTE--KPEEINKRMQE  161 (204)
T ss_dssp             EEEEEEHHHHHHHHHTTCEEEEECCHHH--HH-HHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTS--CHHHHHHHHHH
T ss_pred             CeecCCHHHHHHHHHcCCeEEEEECHHH--HH-HHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence            0000011234455567878888875421  22 233322   24789998 9999999999988642  22333322221


Q ss_pred             -ccCCCC-CCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        170 -LEEPDP-LVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       170 -~~~~~~-~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                       +.+... +...++++|+++ +++++.++|...+
T Consensus       162 ~~~~~~~~~~~~~d~vi~n~-~~e~~~~~i~~~i  194 (204)
T 2qor_A          162 LTREMDEADKVGFNYFIVND-DLARTYAELREYL  194 (204)
T ss_dssp             HHHHHHHHHHHTCSEEEECS-SHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccCcEEEECc-CHHHHHHHHHHHH
Confidence             111100 012245667666 8888888876654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.16  E-value=1.9e-10  Score=102.36  Aligned_cols=152  Identities=21%  Similarity=0.219  Sum_probs=90.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC-CeEEeCCCCCccccccccccCCCCCCcCCh---hHHHHHHHHHHHhhhCCCcE
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLG-VKFIDGDHLHPQSNIDKMSAKQPLNDEDRR---PWLNNINRIIHQLNVDNLTG  113 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg-~~~id~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  113 (433)
                      |.+|+|+|+|||||||+++.|++.++ ..++++|++....     ..+..++.....   ..++.+...+......+..+
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   76 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-----VGGYRPPWESDELLALTWKNITDLTVNFLLAQNDV   76 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-----CTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-----ccccccCccchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence            57899999999999999999999775 4889988774321     223333222111   12223333333344456677


Q ss_pred             EEEcCccc---HHHHHHHHhcC-C--eEEEEEEcCHHHHHHHHHHhhCC-CCCHHhHHHHHhhccCCCCCCCCCeEEEcc
Q psy16778        114 VLVCSALR---RNYRDIIRNNN-R--VVFIYLKAEFGVILSRLQKRAEH-FMPADLLESQFQTLEEPDPLVEPDVRTVSV  186 (433)
Q Consensus       114 Vi~~~~~~---~~~~~~l~~~~-~--~~vv~L~~~~e~l~~Rl~~R~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~  186 (433)
                      |++.....   ..+++.++... .  ..+++|.++++++.+|+..|... ..+...... ++.+..++.   ....+|++
T Consensus        77 ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~-~~~~~~~~~---~~~~ii~t  152 (189)
T 2bdt_A           77 VLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL-VEEFESKGI---DERYFYNT  152 (189)
T ss_dssp             EEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-HHHHHHTTC---CTTSEEEC
T ss_pred             EEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-HHHHhhcCC---CccEEEeC
Confidence            78764221   22233332111 1  46789999999999999887532 122333344 445544432   14467777


Q ss_pred             C-C---CHHHHHHHHh
Q psy16778        187 N-E---PLEGIVSKSA  198 (433)
Q Consensus       187 ~-~---~~ee~~~~i~  198 (433)
                      + .   +++++.+.|.
T Consensus       153 sh~~~~~~e~~~~~i~  168 (189)
T 2bdt_A          153 SHLQPTNLNDIVKNLK  168 (189)
T ss_dssp             SSSCGGGHHHHHHHHH
T ss_pred             CCCChhhHHHHHHHHh
Confidence            6 5   7788888876

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.14  E-value=4.1e-10  Score=105.26  Aligned_cols=134  Identities=13%  Similarity=0.072  Sum_probs=83.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccc--------ccccC-----CCCCCc----CC-hhHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNID--------KMSAK-----QPLNDE----DR-RPWLNNIN  100 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~--------~~~~~-----~~~~~~----~~-~~~~~~~~  100 (433)
                      ++|+|+|++||||||+++.|++.++..++++|.+.......        ....+     +.+...    .. ..+.+...
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   81 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI   81 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence            47999999999999999999999999999999974221110        00001     111111    11 22333444


Q ss_pred             HHHHHhhhCCCcEEEEcCcccHHHHHHHHh----cCC-eEEEEEEcCH-HHHHHHHHHhhCC-----CCCHHhHHHHHhh
Q psy16778        101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRN----NNR-VVFIYLKAEF-GVILSRLQKRAEH-----FMPADLLESQFQT  169 (433)
Q Consensus       101 ~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~----~~~-~~vv~L~~~~-e~l~~Rl~~R~~~-----~~~~~~l~~~~~~  169 (433)
                      ..+ .....+..+|++++.. ...+..+..    ..- ..++||+++. +++.+|+.+|...     +...+.++.+...
T Consensus        82 ~~i-~~~~~g~~vIl~gg~~-~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~~~~~~~~l~e~~~~  159 (253)
T 2ze6_A           82 FEV-DWRKSEEGLILEGGSI-SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIREDRPSLLEELAEL  159 (253)
T ss_dssp             HHH-HTTTTSSEEEEEECCH-HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHH
T ss_pred             HHH-HHHhCCCCeEEeccHH-HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHHHHHHhcCcccchHHHHHHHh
Confidence            445 5556676777776542 333444444    211 4789999997 9999999998632     1223556666666


Q ss_pred             ccCCC
Q psy16778        170 LEEPD  174 (433)
Q Consensus       170 ~~~~~  174 (433)
                      ++.+.
T Consensus       160 ~~~p~  164 (253)
T 2ze6_A          160 WNYPA  164 (253)
T ss_dssp             HTSTT
T ss_pred             cCCcc
Confidence            66654

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=99.09  E-value=2.4e-10  Score=102.89  Aligned_cols=161  Identities=12%  Similarity=0.066  Sum_probs=70.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEeCCC-CCccccccccccCCCCCCcCChhHHH--------------
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRL-GVKFIDGDH-LHPQSNIDKMSAKQPLNDEDRRPWLN--------------   97 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l-g~~~id~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------   97 (433)
                      ++.+|++|+|+|++||||||+++.|++.+ ....+.... ............++.|++......+.              
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGN   81 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCe
Confidence            35678999999999999999999999976 211111111 11110000011233333321111110              


Q ss_pred             ---HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcC-CeEEEEEE-cCHHHHHHHHHHhhCCCCC--HHhHHHHHhhc
Q psy16778         98 ---NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-RVVFIYLK-AEFGVILSRLQKRAEHFMP--ADLLESQFQTL  170 (433)
Q Consensus        98 ---~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~-~~~vv~L~-~~~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~  170 (433)
                         ...+.+...+..+..+|++........   +++.. ...++++. ++++++.+|+.+|+.....  ...+..++...
T Consensus        82 ~~g~~~~~i~~~l~~g~~vv~d~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~  158 (207)
T 2j41_A           82 YYGTPVQYVKDTMDEGHDVFLEIEVEGAKQ---VRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEV  158 (207)
T ss_dssp             EEEEEHHHHHHHHHTTCEEEEECCGGGHHH---HHHHCTTSEEEEEECCC---------------------------CGG
T ss_pred             ecCCCHHHHHHHHHcCCeEEEEECHHHHHH---HHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence               012334444556777888876543322   22222 23455555 6789999999988632211  11222222222


Q ss_pred             cCCCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        171 EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       171 ~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      +.    ...++++|+++ +++++.++|.+.+.
T Consensus       159 ~~----~~~~d~vI~n~-~~e~~~~~i~~~l~  185 (207)
T 2j41_A          159 EM----MNLYDYVVVND-EVELAKNRIQCIVE  185 (207)
T ss_dssp             GG----GGGCSEEEECS-SHHHHHHHHHHHHH
T ss_pred             hc----cccCCEEEECC-CHHHHHHHHHHHHH
Confidence            11    12355777777 89999998877653

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.08  E-value=1.8e-10  Score=102.46  Aligned_cols=160  Identities=14%  Similarity=0.127  Sum_probs=93.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHH---HHHhhhC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRI---IHQLNVD  109 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  109 (433)
                      +.+|.+|+|+|+|||||||+++.|++.++  ..++++|++..... .....++.++...  ......++.   .......
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~-~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~   82 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIK-HGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKE   82 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCC-SSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhh-cccccCCccchhh--hhHHHHHHHHHHHHHHhcc
Confidence            56789999999999999999999999764  45888887643211 1111233333211  122222222   1222234


Q ss_pred             CCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCC-CHHhHHHHHhhccCCCCCCCCCeEEEccC
Q psy16778        110 NLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFM-PADLLESQFQTLEEPDPLVEPDVRTVSVN  187 (433)
Q Consensus       110 ~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~Id~~  187 (433)
                      +..++++... .....+.+..... ..++++.++.+++..|+..|..... ..+.....++.+.+.+.   .++++|+++
T Consensus        83 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~~~~~~~~~l~~---~~~~~i~t~  158 (191)
T 1zp6_A           83 GYFVILDGVV-RPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGA---FEHHVLPVS  158 (191)
T ss_dssp             SCEEEECSCC-CTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCCGG---GGGGEEECT
T ss_pred             CCeEEEeccC-cHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhccCc---ccccEEECC
Confidence            4445555421 1112233332111 4689999999999999988853322 34555555666665542   245778776


Q ss_pred             -CCHHHHHHHHhcCC
Q psy16778        188 -EPLEGIVSKSAIMP  201 (433)
Q Consensus       188 -~~~ee~~~~i~~~l  201 (433)
                       .+++++.+.|.+.+
T Consensus       159 ~~~~~~~~~~i~~~l  173 (191)
T 1zp6_A          159 GKDTDQALQSAINAL  173 (191)
T ss_dssp             TCCTTTTTTTTHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence             67777766665544

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.08  E-value=4.5e-10  Score=103.34  Aligned_cols=173  Identities=14%  Similarity=0.070  Sum_probs=72.8

Q ss_pred             eeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHH-HHhCCeEEeCCCCCccccccccccC--CCCCCcCChhHH
Q psy16778         20 VVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLA-TRLGVKFIDGDHLHPQSNIDKMSAK--QPLNDEDRRPWL   96 (433)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La-~~lg~~~id~D~~~~~~~~~~~~~~--~~~~~~~~~~~~   96 (433)
                      ..+++-+-..+.++++.+|.+|+|+|++||||||+++.|+ +.+.. ++............+...|  +.+........+
T Consensus         9 ~~~~~~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~   87 (231)
T 3lnc_A            9 MGTLEAQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN-IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRL   87 (231)
T ss_dssp             -------------CCEECCCEEEEECSCC----CHHHHHHC----C-EEECCCEESSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred             cchhhhcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC-cccccccCCCCCCccccCCCeEEEecHHHhhhh
Confidence            3445545556788999999999999999999999999999 87643 2322222111000000112  222211111110


Q ss_pred             HHH-----------------HHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcC-C-eEEEEE-EcCHHHHHHHHHHhhCC
Q psy16778         97 NNI-----------------NRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-R-VVFIYL-KAEFGVILSRLQKRAEH  156 (433)
Q Consensus        97 ~~~-----------------~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~-~-~~vv~L-~~~~e~l~~Rl~~R~~~  156 (433)
                      ...                 ...+......+..+|++......   ..+++.. . ...||+ .++.+++.+|+.+|+..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vild~~~~g~---~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~  164 (231)
T 3lnc_A           88 CSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGA---FKFMEMMREHVVSIFIMPPSMEELRRRLCGRRAD  164 (231)
T ss_dssp             HHTTCEEEEEEETTEEEEEECTTHHHHHHHTCEEEEECCHHHH---HHHHHHSGGGEEEEEEECSCHHHHHHC-------
T ss_pred             hhcCceehhhhhccccCCCCHHHHHHHHHcCCeEEEEcCHHHH---HHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCC
Confidence            000                 01133334456667776542111   1122222 2 355665 55799999999988532


Q ss_pred             CCC--HHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        157 FMP--ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       157 ~~~--~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ...  ...+..+....+..    ..++++|+++ +++++.+++.+.+
T Consensus       165 ~~~~i~~rl~~~~~~~~~~----~~~d~vI~n~-~~e~~~~~l~~~i  206 (231)
T 3lnc_A          165 DSEVVEARLKGAAFEISHC----EAYDYVIVNE-DIEETADRISNIL  206 (231)
T ss_dssp             -------CHHHHHHHHTTG----GGSSEEEECS-SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhh----cCCeEEEECc-CHHHHHHHHHHHH
Confidence            111  22344444443322    2366778776 7888888876655

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.06  E-value=8.4e-11  Score=107.86  Aligned_cols=174  Identities=12%  Similarity=0.084  Sum_probs=90.3

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-------CCeEEeCCCCCcccc---ccc-cccCCCCCCcCCh--
Q psy16778         27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-------GVKFIDGDHLHPQSN---IDK-MSAKQPLNDEDRR--   93 (433)
Q Consensus        27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-------g~~~id~D~~~~~~~---~~~-~~~~~~~~~~~~~--   93 (433)
                      +...-+.++.+|+.|+|.|++||||||+++.|++.+       |..++-+..-.....   +.. +..+ .+......  
T Consensus        14 ~~~~~~~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~-~~~~~~~~ll   92 (227)
T 3v9p_A           14 AQTQGPGSMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQ-PMDLETEALL   92 (227)
T ss_dssp             ---------CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHS-CCCHHHHHHH
T ss_pred             HHHhcCccccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcC-CCCHHHHHHH
Confidence            333444567889999999999999999999999988       444432221110000   000 0011 11111000  


Q ss_pred             ---hHHHHHHHHHHHhhhCCCcEEEEcC------------cccHHHHHHHHhc----CC-eEEEEEEcCHHHHHHHHHHh
Q psy16778         94 ---PWLNNINRIIHQLNVDNLTGVLVCS------------ALRRNYRDIIRNN----NR-VVFIYLKAEFGVILSRLQKR  153 (433)
Q Consensus        94 ---~~~~~~~~~~~~~~~~~~~~Vi~~~------------~~~~~~~~~l~~~----~~-~~vv~L~~~~e~l~~Rl~~R  153 (433)
                         ..+..+.+.+...+..|..+|.|-.            +....+...+...    .. +++|||++|++++.+|+.+|
T Consensus        93 f~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R  172 (227)
T 3v9p_A           93 MFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAV  172 (227)
T ss_dssp             HHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence               1111234456667778876666621            1223444434321    12 79999999999999999988


Q ss_pred             hC--CCCC--HHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        154 AE--HFMP--ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       154 ~~--~~~~--~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ++  +...  .+.+++..+.+..+........++||.+.+++++.++|.+.+
T Consensus       173 ~~~dr~E~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l  224 (227)
T 3v9p_A          173 RMPDKFESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVL  224 (227)
T ss_dssp             CCC---CCHHHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHH
T ss_pred             cCccchhhhhHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHH
Confidence            52  2222  223333333332221101124689999999999999887543

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.06  E-value=6.8e-10  Score=100.94  Aligned_cols=166  Identities=16%  Similarity=0.151  Sum_probs=94.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCcccc---ccc-cccCC--CCCCcCCh-----hHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSN---IDK-MSAKQ--PLNDEDRR-----PWLNNINR  101 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~---~~~-~~~~~--~~~~~~~~-----~~~~~~~~  101 (433)
                      .+|+.|+|.|++||||||+++.|++.+   |+.++.+..-.....   ... +..+.  .+......     .....+.+
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~   83 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAG   83 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999988   555554432211100   000 01110  11110000     00112345


Q ss_pred             HHHHhhhCCCcEEEEcC------------cccHHHHHHHHhc----CC-eEEEEEEcCHHHHHHHHHHhhC--CCCC--H
Q psy16778        102 IIHQLNVDNLTGVLVCS------------ALRRNYRDIIRNN----NR-VVFIYLKAEFGVILSRLQKRAE--HFMP--A  160 (433)
Q Consensus       102 ~~~~~~~~~~~~Vi~~~------------~~~~~~~~~l~~~----~~-~~vv~L~~~~e~l~~Rl~~R~~--~~~~--~  160 (433)
                      .+...+..|..+|.|-.            +....+...+...    .. +++|||++|++++.+|+.+|++  +...  .
T Consensus        84 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~~~~  163 (213)
T 4edh_A           84 VIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDR  163 (213)
T ss_dssp             THHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTTTSCH
T ss_pred             HHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCcccccHH
Confidence            56667778876676621            1223444444321    12 7999999999999999998853  2221  2


Q ss_pred             HhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        161 DLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      +.++...+.+..+........++||.+.+++++.++|.+.+
T Consensus       164 ~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l  204 (213)
T 4edh_A          164 RFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLL  204 (213)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence            33333333332221001124789999999999999887654

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.05  E-value=6.2e-10  Score=106.00  Aligned_cols=119  Identities=16%  Similarity=0.183  Sum_probs=76.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeCCCCCcccccc-ccccCCCC-CCcCChhHHHH-HHHHHHHhhhC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL--GVKFIDGDHLHPQSNID-KMSAKQPL-NDEDRRPWLNN-INRIIHQLNVD  109 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~D~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~  109 (433)
                      ..++.+|+|+|+|||||||+++.|++.+  ++.+|+.|.+....... .+...+.. .......++.. ....+...+..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~  109 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ  109 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence            4567899999999999999999999998  88999998875321100 00000000 00001123333 33455566677


Q ss_pred             CCcEEEEcCcccH----HHHHHHHhcCC-eEEEEEEcCHHHH----HHHHHHh
Q psy16778        110 NLTGVLVCSALRR----NYRDIIRNNNR-VVFIYLKAEFGVI----LSRLQKR  153 (433)
Q Consensus       110 ~~~~Vi~~~~~~~----~~~~~l~~~~~-~~vv~L~~~~e~l----~~Rl~~R  153 (433)
                      |.++|++++....    .+++.+++.+. ..++++.+|++++    .+|+.+|
T Consensus       110 g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R  162 (287)
T 1gvn_B          110 GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM  162 (287)
T ss_dssp             TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence            8899999876443    34445555433 4578999999999    8888766

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.03  E-value=7.4e-10  Score=102.93  Aligned_cols=176  Identities=15%  Similarity=0.103  Sum_probs=86.5

Q ss_pred             eeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCe----------EEeCCCCCccccccc---ccc-CCCC
Q psy16778         22 TLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVK----------FIDGDHLHPQSNIDK---MSA-KQPL   87 (433)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~----------~id~D~~~~~~~~~~---~~~-~~~~   87 (433)
                      +-....++++++++.+|.+|+|+|++||||||+++.|++.+|..          +++.|.+........   ... .+.+
T Consensus         9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~   88 (245)
T 2jeo_A            9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNF   88 (245)
T ss_dssp             --------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCT
T ss_pred             CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCC
Confidence            33445788999999999999999999999999999999988865          677776543211111   011 1223


Q ss_pred             CCcCChhHHHHHHHHHHHhh-----------------------h-CCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCH
Q psy16778         88 NDEDRRPWLNNINRIIHQLN-----------------------V-DNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEF  143 (433)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~  143 (433)
                      ..+.... ...+.+.+..+.                       . ....+|++..-..  ....+.+.. ..+|++.++.
T Consensus        89 ~~~~~~~-~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~--~~~~l~~~~-~~~i~v~th~  164 (245)
T 2jeo_A           89 DHPDAFD-NDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVF--YSQEIRDMF-HLRLFVDTDS  164 (245)
T ss_dssp             TSGGGBC-HHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTT--TSHHHHTTC-SEEEEEECCH
T ss_pred             CCccccc-HHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCcccc--ccHHHHHhc-CeEEEEECCH
Confidence            2221111 111222222110                       0 1123444432211  111233332 4789999998


Q ss_pred             HHHHHHHHHhhC-CCCCHHhHHHHHhh--------ccCCCCCCCCCeEEE----ccCCCHHHHHHHHhcCCCC
Q psy16778        144 GVILSRLQKRAE-HFMPADLLESQFQT--------LEEPDPLVEPDVRTV----SVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       144 e~l~~Rl~~R~~-~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~I----d~~~~~ee~~~~i~~~l~~  203 (433)
                      +....|...|.- .-...+.+..++..        +..+.  ++.++++|    +++.+++++.+++.+.+..
T Consensus       165 ~~~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~--~~~aD~vi~~~~dn~~~~~~l~~~i~~~~~~  235 (245)
T 2jeo_A          165 DVRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPT--KKYADVIIPRGVDNMVAINLIVQHIQDILNG  235 (245)
T ss_dssp             HHHHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGG--GGGCSEEEESSTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcc--hhcceEEEcCCCCccHHHHHHHHHHHHHHhc
Confidence            777766655531 01123333333322        11222  34577888    6667888888888776544

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.00  E-value=1.3e-09  Score=98.71  Aligned_cols=156  Identities=14%  Similarity=0.109  Sum_probs=77.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCCCcCChhHHHH---------------
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN---------------   98 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------   98 (433)
                      ++|.+|+|+||+||||||+++.|++.+.  +.+...........  +...|..+.......+...               
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~--~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~   83 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPRE--GEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGN   83 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCT--TCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcC--cccCCceeEEecHHHHHHHHhcCcEEEEEEEccc
Confidence            5688999999999999999999999874  33322222111110  0011222211111111110               


Q ss_pred             ----HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcC-HHHHHHHHHHhhCCCCC--HHhHHHHHhhc
Q psy16778         99 ----INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAE-FGVILSRLQKRAEHFMP--ADLLESQFQTL  170 (433)
Q Consensus        99 ----~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~-~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~  170 (433)
                          ....+...+..|..+|++.....   ...+++... ..+||+..+ .+++.+|+.+|+.....  ...+.......
T Consensus        84 ~yg~~~~~i~~~l~~g~~vild~~~~g---~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~  160 (208)
T 3tau_A           84 YYGTPLEYVEEKLAAGVDIFLEIEVQG---AMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEI  160 (208)
T ss_dssp             EEEEEHHHHHHHHHTTCCEEEECCHHH---HHHHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHcCCeEEEEeeHHH---HHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence                01334556677888888764311   122333323 466777655 99999999999642211  11222222221


Q ss_pred             cCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        171 EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       171 ~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ...   . ..+++|.++ +.++...++...+
T Consensus       161 ~~~---~-~~d~vivN~-~~~~~~~~l~~~i  186 (208)
T 3tau_A          161 EMM---A-SYDYAVVND-VVANAVQKIKGIV  186 (208)
T ss_dssp             HHG---G-GSSEEEECS-SHHHHHHHHHHHH
T ss_pred             Hhh---c-cCCEEEECc-CHHHHHHHHHHHH
Confidence            111   1 134556554 5888888876655

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.98  E-value=5e-09  Score=100.91  Aligned_cols=117  Identities=17%  Similarity=0.273  Sum_probs=72.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc--------cccccCC-----C---C-CCcCC-hhHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI--------DKMSAKQ-----P---L-NDEDR-RPWLNN   98 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~--------~~~~~~~-----~---~-~~~~~-~~~~~~   98 (433)
                      ++.+|+|+||+|||||||+..||++++..+|++|.+.-....        .....|.     .   + .+... ..|.+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~  118 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL  118 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence            446899999999999999999999999999999988311000        0001122     1   1 11122 233444


Q ss_pred             HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHh---------------------cCC-eEEEEEEcCHHHHHHHHHHhh
Q psy16778         99 INRIIHQLNVDNLTGVLVCSALRRNYRDIIRN---------------------NNR-VVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        99 ~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~---------------------~~~-~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      ....+......++.+|+.+|. .-.....+..                     ... ..+|||+++.++|.+|+.+|.
T Consensus       119 a~~~i~~i~~~g~~pIlvGGt-glYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R~  195 (339)
T 3a8t_A          119 AGKAVSEITGRRKLPVLVGGS-NSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRV  195 (339)
T ss_dssp             HHHHHHHHHHTTCEEEEECCC-HHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCeEEEEcCH-HHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhhc
Confidence            445555655666555554443 2222222221                     111 678999999999999999885

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.95  E-value=3.7e-09  Score=97.47  Aligned_cols=167  Identities=14%  Similarity=0.167  Sum_probs=87.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCe-EEeCCCCCccc---cccc-cccC---CCCCCcCCh-----hHHH
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRL---GVK-FIDGDHLHPQS---NIDK-MSAK---QPLNDEDRR-----PWLN   97 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~-~id~D~~~~~~---~~~~-~~~~---~~~~~~~~~-----~~~~   97 (433)
                      ...+|..|+|.|++||||||+++.|++.+   |+. .+-+..-....   .... +..+   ..+......     ....
T Consensus        23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~  102 (236)
T 3lv8_A           23 NAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ  102 (236)
T ss_dssp             ---CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHH
Confidence            34568899999999999999999999988   444 22221111000   0000 0000   001110010     0112


Q ss_pred             HHHHHHHHhhhCCCcEEEEcC------------cccHHHHHHHHh----cCC-eEEEEEEcCHHHHHHHHHHhhC--CCC
Q psy16778         98 NINRIIHQLNVDNLTGVLVCS------------ALRRNYRDIIRN----NNR-VVFIYLKAEFGVILSRLQKRAE--HFM  158 (433)
Q Consensus        98 ~~~~~~~~~~~~~~~~Vi~~~------------~~~~~~~~~l~~----~~~-~~vv~L~~~~e~l~~Rl~~R~~--~~~  158 (433)
                      .+.+.+...+..|..+|.|-.            +....+...+.+    ... +++|||++|++++.+|+.+|+.  +..
T Consensus       103 ~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E  182 (236)
T 3lv8_A          103 LVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIE  182 (236)
T ss_dssp             HHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTTT
T ss_pred             HHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchhh
Confidence            334556677778876776621            122334333332    112 7999999999999999998863  222


Q ss_pred             C--HHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        159 P--ADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       159 ~--~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      .  .+.+++..+.+..+.. ..+..++||++.+++++.++|.+.+
T Consensus       183 ~~~~~~~~rv~~~y~~la~-~~~~~~vIDa~~sieeV~~~I~~~l  226 (236)
T 3lv8_A          183 KMDISFFERARERYLELAN-SDDSVVMIDAAQSIEQVTADIRRAL  226 (236)
T ss_dssp             TSCHHHHHHHHHHHHHHHH-HCTTEEEEETTSCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHH-HCCCEEEEeCCCCHHHHHHHHHHHH
Confidence            1  2333333333322221 1113789999999999998887654

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=98.94  E-value=4.9e-09  Score=95.16  Aligned_cols=164  Identities=16%  Similarity=0.238  Sum_probs=92.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CC-eEEeCCCCCccc---cccccccC------CCCCCcCCh-----hHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL---GV-KFIDGDHLHPQS---NIDKMSAK------QPLNDEDRR-----PWLNN   98 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l---g~-~~id~D~~~~~~---~~~~~~~~------~~~~~~~~~-----~~~~~   98 (433)
                      +|..|+|.|++||||||+++.|++.+   |+ .++-+..-....   .+...-.+      ..+......     .....
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~   81 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQL   81 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHH
Confidence            57899999999999999999999988   55 322221110000   00010000      111110000     01123


Q ss_pred             HHHHHHHhhhCCCcEEEEcC------------cccHHHHHHHHhc----CC-eEEEEEEcCHHHHHHHHHHhhC--CCC-
Q psy16778         99 INRIIHQLNVDNLTGVLVCS------------ALRRNYRDIIRNN----NR-VVFIYLKAEFGVILSRLQKRAE--HFM-  158 (433)
Q Consensus        99 ~~~~~~~~~~~~~~~Vi~~~------------~~~~~~~~~l~~~----~~-~~vv~L~~~~e~l~~Rl~~R~~--~~~-  158 (433)
                      +++.+...+..|..+|.|-.            +....+...+...    .. +++|||++|+++..+|+.+|++  +.. 
T Consensus        82 ~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E~  161 (213)
T 4tmk_A           82 VETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQ  161 (213)
T ss_dssp             HHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTTT
T ss_pred             HHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCccchhh
Confidence            44567777888876666621            1224444333321    12 7999999999999999999864  222 


Q ss_pred             -CHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        159 -PADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       159 -~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                       ..+.++...+.+..+.. .....++||.+.+++++.++|.+.+
T Consensus       162 ~~~~f~~rv~~~y~~la~-~~~~~~vIDa~~s~eeV~~~I~~~l  204 (213)
T 4tmk_A          162 ESFDFFNRTRARYLELAA-QDKSIHTIDATQPLEAVMDAIRTTV  204 (213)
T ss_dssp             SCHHHHHHHHHHHHHHHH-TCTTEEEEETTSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHH-HCCcEEEECCCCCHHHHHHHHHHHH
Confidence             12333333333322211 1125688999999999998887654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.91  E-value=6.7e-11  Score=116.29  Aligned_cols=95  Identities=19%  Similarity=0.210  Sum_probs=73.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.||.          ...++++++++.+|.+++|+|+|||||||+.++|++.+    |...+++.++.....
T Consensus         3 ~l~~~~l~~~yg~----------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~   72 (381)
T 3rlf_A            3 SVQLQNVTKAWGE----------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP   72 (381)
T ss_dssp             CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG
T ss_pred             EEEEEeEEEEECC----------EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH
Confidence            6899999999986          34667777999999999999999999999999999966    677787776643222


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (433)
                       .....++.||+....+.++..+++...+.
T Consensus        73 -~~r~ig~VfQ~~~l~p~ltV~eni~~~~~  101 (381)
T 3rlf_A           73 -AERGVGMVFQSYALYPHLSVAENMSFGLK  101 (381)
T ss_dssp             -GGSCEEEECTTCCCCTTSCHHHHHTHHHH
T ss_pred             -HHCCEEEEecCCcCCCCCCHHHHHHHHHH
Confidence             22346888998777776677777665543

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=98.91  E-value=6.8e-09  Score=93.75  Aligned_cols=165  Identities=15%  Similarity=0.101  Sum_probs=86.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeCCCCCcccc---ccc-cccCCCCCCcCChhH-----HHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL--GVKFIDGDHLHPQSN---IDK-MSAKQPLNDEDRRPW-----LNNINRIIHQ  105 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~D~~~~~~~---~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~  105 (433)
                      ++..|+|-|..||||||+++.|++.|  |..++-+..-.....   ... +..+.........-.     ...+...+..
T Consensus         1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p   80 (205)
T 4hlc_A            1 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIP   80 (205)
T ss_dssp             -CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999988  555543322110000   000 001111111000000     1123455666


Q ss_pred             hhhCCCcEEEEcC------------cccHHHHHHHHhc----C-CeEEEEEEcCHHHHHHHHHHhhCCCC--CHH---hH
Q psy16778        106 LNVDNLTGVLVCS------------ALRRNYRDIIRNN----N-RVVFIYLKAEFGVILSRLQKRAEHFM--PAD---LL  163 (433)
Q Consensus       106 ~~~~~~~~Vi~~~------------~~~~~~~~~l~~~----~-~~~vv~L~~~~e~l~~Rl~~R~~~~~--~~~---~l  163 (433)
                      .+.+|..+|.|-.            +....+...+...    . +++++||++|+++..+|+.+|+....  ..+   .+
T Consensus        81 ~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~~~f~  160 (205)
T 4hlc_A           81 ALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFH  160 (205)
T ss_dssp             HHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHHHHHH
T ss_pred             HHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccCHHHH
Confidence            7778865655521            1223333333321    1 27899999999999999988863221  111   12


Q ss_pred             HHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        164 ESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      +...+.+............+||.+.+++++.++|.+.+
T Consensus       161 ~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i  198 (205)
T 4hlc_A          161 EKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTI  198 (205)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            22222222211101114678898899999988876543

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=98.90  E-value=1.4e-09  Score=106.64  Aligned_cols=171  Identities=10%  Similarity=0.027  Sum_probs=108.5

Q ss_pred             Hhhhcceeeccccc--CCCCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCC-------
Q psy16778        221 FALKVLRIRPRVMR--DLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTIST-------  291 (433)
Q Consensus       221 ~a~~~~~l~pr~l~--~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~-------  291 (433)
                      ..|++|+|.|+.|.  +.+++||+|+|||++++.||+++|+++.......-...++++|.+.|+.++++....       
T Consensus        27 ~~~~~v~l~~~~lp~~~~~~vd~st~~~g~~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~  106 (368)
T 3vkj_A           27 TFLNDVILVHQGFPGISFSEINTKTKFFRKEISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEA  106 (368)
T ss_dssp             CSGGGEEECCCSSCBSBGGGCBCCEEETTEEESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGG
T ss_pred             CCcceEEEEcCCCCccCcccccceeEECCEeccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHH
Confidence            46899999999999  778999999999999999999999976433223344569999999999999887731       


Q ss_pred             -CCHHHHHHhCCCCcceEEEee----c-cCHHHHHHHHHHHHHcCCcEEEEeeee-c--ccCccccccccccCCCccchH
Q psy16778        292 -TSIEELAEKTPQTTKWFQLYI----Y-RDREITKSLVQRAEKAGYKALVLTVDT-N--VFGTRYADIRNKFNMPSHLNI  362 (433)
Q Consensus       292 -~~~eeva~~~~~~~~w~qly~----~-~d~~~~~~~~~~A~~ag~~~i~ltvD~-~--~~G~r~~~~~~~~~~~~~~s~  362 (433)
                       .+++-+.+.+|+.+.+..+..    . .+.+..   .+.++..+..++.+.+.. +  +.....++.+       ...+
T Consensus       107 ~~s~~~vr~~ap~~~~~anlg~~ql~~~~~~~~~---~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~-------~~~~  176 (368)
T 3vkj_A          107 RESFAIVRKVAPTIPIIANLGMPQLVKGYGLKEF---QDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQ-------IYAL  176 (368)
T ss_dssp             SHHHHHHHHHCSSSCEEEEEEGGGGGTTCCHHHH---HHHHHHTTCSEEEEECCHHHHHHSSSCCCBCB-------THHH
T ss_pred             HhhHHHHHHhCcCcceecCcCeeecCCCCCHHHH---HHHHHHhcCCCeEEEecchhhhhCCCCCchhh-------HHHH
Confidence             234335555676666766665    2 343433   233444577888876531 0  1000011110       0123


Q ss_pred             HHHHhhCCCcchhhhhhccCCHH---HHHHHHHHHHHcCCcEEEEe
Q psy16778        363 EELAEKTPQTTKWFQLYIYRDRE---ITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       363 e~i~~~~~~~~~w~Qly~~~~~~---~~~~~~~ra~~~G~~aivlT  405 (433)
                      +.|......    ..+++..|..   ++.+.+++++++|+++|+|.
T Consensus       177 ~~i~~i~~~----~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~  218 (368)
T 3vkj_A          177 EKLRDISKE----LSVPIIVKESGNGISMETAKLLYSYGIKNFDTS  218 (368)
T ss_dssp             HHHHHHHTT----CSSCEEEECSSSCCCHHHHHHHHHTTCCEEECC
T ss_pred             HHHHHHHHH----cCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEe
Confidence            333332111    1233333322   57899999999999998863

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.89  E-value=1.9e-09  Score=100.11  Aligned_cols=117  Identities=20%  Similarity=0.200  Sum_probs=68.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccccc----ccccCCCCCCcCChhHHHHHHHHHHHhhh-CCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNID----KMSAKQPLNDEDRRPWLNNINRIIHQLNV-DNL  111 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  111 (433)
                      ++++|+|+|++||||||+++.|++++|..+++.+++.......    +......++.....+.....+.+...+.. .+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~  105 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ  105 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence            4689999999999999999999999999999887764321000    00000001111111122222222222221 344


Q ss_pred             cEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHh
Q psy16778        112 TGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKR  153 (433)
Q Consensus       112 ~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R  153 (433)
                      ++++++........+.+..... ..++||+++++++.+|+..|
T Consensus       106 ~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r  148 (246)
T 2bbw_A          106 HWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRR  148 (246)
T ss_dssp             CEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred             eEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcC
Confidence            5677654433333334433222 58999999999999999776

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.89  E-value=1.9e-10  Score=105.99  Aligned_cols=70  Identities=19%  Similarity=0.163  Sum_probs=34.0

Q ss_pred             eEEEEEEcCHHHHHHHHHHhhCCCC---C---HHhHHHHHhhccCCCC-CCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        134 VVFIYLKAEFGVILSRLQKRAEHFM---P---ADLLESQFQTLEEPDP-LVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       134 ~~vv~L~~~~e~l~~Rl~~R~~~~~---~---~~~l~~~~~~~~~~~~-~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                      +++|||++|++++.+|+.+|+....   .   ...+...+..+...++ ......++||++.+++++.++|.+.+.+
T Consensus       148 D~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~  224 (230)
T 2vp4_A          148 DLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESS  224 (230)
T ss_dssp             SEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC---------------
T ss_pred             CEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence            7899999999999999988742111   1   2234444444432211 0122458899999999999998877654

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=98.87  E-value=4.9e-09  Score=94.11  Aligned_cols=165  Identities=18%  Similarity=0.129  Sum_probs=90.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCcccc---ccccccCCCCCCcCChhH----HHHHHHHHHHhhh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSN---IDKMSAKQPLNDEDRRPW----LNNINRIIHQLNV  108 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  108 (433)
                      +.|+|-|.-||||||+++.|++.|   |..++-+..-.....   ....-...........-.    .......+...+.
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~   80 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLS   80 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999988   776664433211100   000000111111100000    0122344566677


Q ss_pred             CCCcEEEEcCc------------ccHHHHHHHHhc----C-CeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhcc
Q psy16778        109 DNLTGVLVCSA------------LRRNYRDIIRNN----N-RVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLE  171 (433)
Q Consensus       109 ~~~~~Vi~~~~------------~~~~~~~~l~~~----~-~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~  171 (433)
                      .|..+|.|-..            ....+...+...    . +++++||++|+++..+|..++. +....+.+....+.+.
T Consensus        81 ~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d-r~e~~ef~~rv~~~y~  159 (197)
T 3hjn_A           81 EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN-RFEKREFLERVREGYL  159 (197)
T ss_dssp             TTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C-TTCCHHHHHHHHHHHH
T ss_pred             CCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC-ccccHHHHHHHHHHHH
Confidence            77666655211            222332222221    1 2799999999999999976553 3444444443333332


Q ss_pred             CCCCCCCCCeEEEccCCCHHHHHHHHhcCCCCC
Q psy16778        172 EPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPTR  204 (433)
Q Consensus       172 ~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~~  204 (433)
                      ..........++||.+.+++++.++|.+.+.++
T Consensus       160 ~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~r  192 (197)
T 3hjn_A          160 VLAREHPERIVVLDGKRSIEEIHRDVVREVKRR  192 (197)
T ss_dssp             HHHHHCTTTEEEEETTSCHHHHHHHHHHHHSCC
T ss_pred             HHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence            221100113578898999999999998887664

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.82  E-value=6e-10  Score=108.72  Aligned_cols=94  Identities=18%  Similarity=0.128  Sum_probs=71.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCc---
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHP---   74 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~---   74 (433)
                      ++++++|++.|+.          ...++++++++.+|.+++|+|+|||||||+.++|++.+    |...+++.++..   
T Consensus         4 ~l~i~~ls~~y~~----------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~   73 (359)
T 3fvq_A            4 ALHIGHLSKSFQN----------TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNT   73 (359)
T ss_dssp             CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSC
T ss_pred             EEEEEeEEEEECC----------EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECccccc
Confidence            6899999999986          34666777999999999999999999999999999966    667777765521   


Q ss_pred             cccccccccCCCCCCcCChhHHHHHHHHHHH
Q psy16778         75 QSNIDKMSAKQPLNDEDRRPWLNNINRIIHQ  105 (433)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (433)
                      .........++.||+....+.++..+++...
T Consensus        74 ~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~  104 (359)
T 3fvq_A           74 NLPVRERRLGYLVQEGVLFPHLTVYRNIAYG  104 (359)
T ss_dssp             BCCGGGSCCEEECTTCCCCTTSCHHHHHHTT
T ss_pred             ccchhhCCEEEEeCCCcCCCCCCHHHHHHHH
Confidence            1111223468888887766666666666554

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=98.81  E-value=3e-09  Score=103.86  Aligned_cols=159  Identities=16%  Similarity=0.133  Sum_probs=104.4

Q ss_pred             hhHHhhhcceeeccccc-CC-CCCCceeeeC-----CCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCC
Q psy16778        218 FEQFALKVLRIRPRVMR-DL-SKRTLVTDAL-----GHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTIS  290 (433)
Q Consensus       218 ~~~~a~~~~~l~pr~l~-~~-~~~d~~~~~~-----g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s  290 (433)
                      .|..+|++|.|+|+.+. ++ +++|++|+|+     |.+++.||+++|+++      .++.++|+|+.++|...+++.  
T Consensus        17 ~~~~~fddv~l~p~~~~~~~~~~vdl~t~l~~~~~~~~~l~~PIi~ApM~~------~~~~~lA~Ava~~Gglg~i~~--   88 (351)
T 2c6q_A           17 RGSLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDT------VGTFEMAKVLCKFSLFTAVHK--   88 (351)
T ss_dssp             --CCCGGGEEECCCCBCCCCGGGCBCCEEEECTTTCCEEEECCEEECSSTT------TSCHHHHHHHHHTTCEEECCT--
T ss_pred             cCCCCcceEEEECCCCCCCccccceeEEEeccccCcCccccCCEEECCCCC------CCcHHHHHHHHHCCCEEEEcC--
Confidence            34578999999999987 67 7999999999     999999999999874      577889999999999888774  


Q ss_pred             CCCHHHHHHhCCCCcceE-EEe--eccCHHHHHHHHHHHHHc--CCcEEEEeeeecccCccccccccccCCCccch---H
Q psy16778        291 TTSIEELAEKTPQTTKWF-QLY--IYRDREITKSLVQRAEKA--GYKALVLTVDTNVFGTRYADIRNKFNMPSHLN---I  362 (433)
Q Consensus       291 ~~~~eeva~~~~~~~~w~-qly--~~~d~~~~~~~~~~A~~a--g~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s---~  362 (433)
                      +.++|++++.....+.++ .+.  .....+.. +.++...+.  |+..+.+++.  . |.            +...   +
T Consensus        89 ~~s~e~~~~~i~~~p~~l~~v~~~~g~~~~~~-~~~~~l~~~~~g~~~i~i~~~--~-g~------------~~~~~~~i  152 (351)
T 2c6q_A           89 HYSLVQWQEFAGQNPDCLEHLAASSGTGSSDF-EQLEQILEAIPQVKYICLDVA--N-GY------------SEHFVEFV  152 (351)
T ss_dssp             TCCHHHHHHHHHHCGGGCTTEEEEECSSHHHH-HHHHHHHHHCTTCCEEEEECS--C-TT------------BHHHHHHH
T ss_pred             CCCHHHHHHHHhhCchhhheeEeecCCChHHH-HHHHHHHhccCCCCEEEEEec--C-CC------------cHHHHHHH
Confidence            578888876431112222 111  12222222 334444444  8888776542  1 21            1112   3


Q ss_pred             HHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEec
Q psy16778        363 EELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTV  406 (433)
Q Consensus       363 e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTv  406 (433)
                      +.+.+..++      +.+......+.+.+++|.++|+++|+|+.
T Consensus       153 ~~lr~~~~~------~~vi~g~v~t~e~A~~a~~aGaD~I~v~~  190 (351)
T 2c6q_A          153 KDVRKRFPQ------HTIMAGNVVTGEMVEELILSGADIIKVGI  190 (351)
T ss_dssp             HHHHHHCTT------SEEEEEEECSHHHHHHHHHTTCSEEEECS
T ss_pred             HHHHHhcCC------CeEEEEeCCCHHHHHHHHHhCCCEEEECC
Confidence            333333321      22222345678999999999999999963

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.78  E-value=6.6e-09  Score=106.90  Aligned_cols=118  Identities=17%  Similarity=0.211  Sum_probs=70.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCe-----EEeCCCCCccccccccccCCCCCCcCChhHHHHHHHH-------
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVK-----FIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRI-------  102 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~-----~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  102 (433)
                      ..++.+|+|+|+|||||||+++.|++.+++.     +++.|+++....... .....|. +.....++..+..       
T Consensus        32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~-~~~~~f~-~~~~~~~~~re~~~~~~l~~  109 (520)
T 2axn_A           32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQY-SSYNFFR-PDNEEAMKVRKQCALAALRD  109 (520)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCC-CCGGGGC-TTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCC-ccccccC-cccHHHHHHHHHHHHHHHHH
Confidence            4566899999999999999999999998443     466677653311100 0011122 2222333222222       


Q ss_pred             HHHhh--hCCCcEEEEcCcccHHHHHHH----HhcCC-eEEEEEEcC-HHHHHHHHHHhh
Q psy16778        103 IHQLN--VDNLTGVLVCSALRRNYRDII----RNNNR-VVFIYLKAE-FGVILSRLQKRA  154 (433)
Q Consensus       103 ~~~~~--~~~~~~Vi~~~~~~~~~~~~l----~~~~~-~~vv~L~~~-~e~l~~Rl~~R~  154 (433)
                      +...+  ..+..+|+|+++....+++.+    ++.+. .++|++.|+ ++++.+|+.+|.
T Consensus       110 ~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~  169 (520)
T 2axn_A          110 VKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVK  169 (520)
T ss_dssp             HHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhh
Confidence            11222  467788999888776666544    33332 456666777 788888887665

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.75  E-value=5.7e-08  Score=87.63  Aligned_cols=40  Identities=35%  Similarity=0.488  Sum_probs=34.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCc
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHP   74 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~   74 (433)
                      .+++.+|+|+|++||||||+++.|++.++  +.+++.|....
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~   44 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK   44 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence            45778999999999999999999999988  99999988754

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=98.75  E-value=4.1e-09  Score=95.83  Aligned_cols=166  Identities=13%  Similarity=0.071  Sum_probs=88.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccc----ccccccCC--CCCCcCChhHH--HH--HHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN----IDKMSAKQ--PLNDEDRRPWL--NN--INRIIHQ  105 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~----~~~~~~~~--~~~~~~~~~~~--~~--~~~~~~~  105 (433)
                      ++|+.|+|.|++||||||+++.|++.++....-...-.....    +...-.+.  ........-.+  .+  ..+.+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I~p   82 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKK   82 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999862111111100000    00000010  01110000011  11  1234556


Q ss_pred             hhhCCCcEEEEcCccc-----------HHHHHHHHhc---C--CeEEEEE-EcCHHHHHHHHHHhhCCCCCHHhHHHHHh
Q psy16778        106 LNVDNLTGVLVCSALR-----------RNYRDIIRNN---N--RVVFIYL-KAEFGVILSRLQKRAEHFMPADLLESQFQ  168 (433)
Q Consensus       106 ~~~~~~~~Vi~~~~~~-----------~~~~~~l~~~---~--~~~vv~L-~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~  168 (433)
                      .+..|..+|.|-...+           ....+++.+.   .  ++++||| ++|+++..+|+..+.++....+.+++..+
T Consensus        83 aL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~dr~E~~~f~~rvr~  162 (216)
T 3tmk_A           83 DLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQ  162 (216)
T ss_dssp             HHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCCTTCCHHHHHHHHH
T ss_pred             HHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcccccHHHHHHHHHH
Confidence            6677866666632200           0112233332   1  1799999 99999999997655444444333333222


Q ss_pred             hccCCCC----CCCCCeEEEc-cCCCHHHHHHHHhcCC
Q psy16778        169 TLEEPDP----LVEPDVRTVS-VNEPLEGIVSKSAIMP  201 (433)
Q Consensus       169 ~~~~~~~----~~~~~~~~Id-~~~~~ee~~~~i~~~l  201 (433)
                      .+..+..    +.....++|| .+.+++++.++|.+.+
T Consensus       163 ~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i  200 (216)
T 3tmk_A          163 TFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIV  200 (216)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            2222110    0112568899 6799999988876654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.74  E-value=1e-09  Score=102.56  Aligned_cols=91  Identities=16%  Similarity=0.134  Sum_probs=63.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++.....
T Consensus        15 ~l~i~~l~~~y~~----------~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~   84 (256)
T 1vpl_A           15 AVVVKDLRKRIGK----------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH   84 (256)
T ss_dssp             CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHH
T ss_pred             eEEEEEEEEEECC----------EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHH
Confidence            7899999999975          23566777999999999999999999999999999865    556666654432111


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHH
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRI  102 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~  102 (433)
                      ......++.+|+......++..+++
T Consensus        85 ~~~~~i~~v~q~~~l~~~ltv~enl  109 (256)
T 1vpl_A           85 EVRKLISYLPEEAGAYRNMQGIEYL  109 (256)
T ss_dssp             HHHTTEEEECTTCCCCTTSBHHHHH
T ss_pred             HHhhcEEEEcCCCCCCCCCcHHHHH
Confidence            1112346667765444434444444

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.74  E-value=2.1e-09  Score=105.16  Aligned_cols=94  Identities=17%  Similarity=0.179  Sum_probs=69.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.||..          ..++++++++.+|.+++|+|+|||||||+.+.|++.+    |...+++.++.....
T Consensus         3 ~l~~~~l~~~y~~~----------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~   72 (362)
T 2it1_A            3 EIKLENIVKKFGNF----------TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP   72 (362)
T ss_dssp             CEEEEEEEEESSSS----------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG
T ss_pred             EEEEEeEEEEECCE----------EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence            58999999999762          2456667889999999999999999999999999966    666777765532111


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIHQL  106 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (433)
                       .....++.||+....+.++..+++...+
T Consensus        73 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~  100 (362)
T 2it1_A           73 -KDRNVGLVFQNWALYPHMTVYKNIAFPL  100 (362)
T ss_dssp             -GGTTEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred             -hHCcEEEEecCcccCCCCCHHHHHHHHH
Confidence             1234578888866666666666665543

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.73  E-value=1.7e-09  Score=105.72  Aligned_cols=92  Identities=17%  Similarity=0.179  Sum_probs=68.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.|+.          ...++++++++.+|.+++|+|+|||||||+.+.|++.+    |...+++.++.....
T Consensus         3 ~l~~~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~   72 (359)
T 2yyz_A            3 SIRVVNLKKYFGK----------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP   72 (359)
T ss_dssp             CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG
T ss_pred             EEEEEEEEEEECC----------EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh
Confidence            5899999999986          23566677889999999999999999999999999966    667777765532111


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHH
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIH  104 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (433)
                       .....++.||+....+.++..+++..
T Consensus        73 -~~r~ig~v~Q~~~l~~~ltv~eni~~   98 (359)
T 2yyz_A           73 -KYREVGMVFQNYALYPHMTVFENIAF   98 (359)
T ss_dssp             -GGTTEEEECSSCCCCTTSCHHHHHHG
T ss_pred             -hhCcEEEEecCcccCCCCCHHHHHHH
Confidence             12345788887666665566555544

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.72  E-value=7.9e-08  Score=87.61  Aligned_cols=158  Identities=12%  Similarity=0.091  Sum_probs=81.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC--eE----EeCCCCCccccccccccCCCCCCcCChhHHHH---------
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGV--KF----IDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN---------   98 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~--~~----id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   98 (433)
                      .+++|.+++|+|||||||||+.+.|++.+..  ..    +.+.....   ......++.|+.......+..         
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~---~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~   88 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP---GEVHGEHYFFVNHDEFKEMISRDAFLEHAE   88 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT---TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc---ccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence            4789999999999999999999999997641  11    11111110   011123455554322221111         


Q ss_pred             --------HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHh
Q psy16778         99 --------INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQ  168 (433)
Q Consensus        99 --------~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~  168 (433)
                              -...+...+..|..++++..   ......+.+...  ..++.+.-+.+++.+|+..|+.  ...+.+...+.
T Consensus        89 ~~~~~yg~~~~~v~~~l~~G~illLDLD---~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG~--~~~e~i~~rl~  163 (219)
T 1s96_A           89 VFGNYYGTSREAIEQVLATGVDVFLDID---WQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQ--DSEEVIAKRMA  163 (219)
T ss_dssp             ETTEEEEEEHHHHHHHHTTTCEEEEECC---HHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSC--SCHHHHHHHHH
T ss_pred             HHhccCCCCHHHHHHHHhcCCeEEEEEC---HHHHHHHHHHccCCEEEEEECCCHHHHHHHHHHcCC--CCHHHHHHHHH
Confidence                    01235556667877888833   333333333322  3444555678999999988763  22333333322


Q ss_pred             hc-cCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        169 TL-EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       169 ~~-~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      .- .+... ....+++|.+ .+.++...++...+
T Consensus       164 ~a~~e~~~-~~~~d~~i~N-d~l~~a~~~l~~ii  195 (219)
T 1s96_A          164 QAVAEMSH-YAEYDYLIVN-DDFDTALTDLKTII  195 (219)
T ss_dssp             HHHHHHTT-GGGSSEEEEC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHhh-ccCCCEEEEC-cCHHHHHHHHHHHH
Confidence            11 11110 1113445555 46777666665554

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.72  E-value=1.3e-09  Score=100.62  Aligned_cols=99  Identities=19%  Similarity=0.122  Sum_probs=70.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.|+...      .....++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++.....
T Consensus         1 ~l~~~~l~~~y~~~~------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~   74 (235)
T 3tif_A            1 MVKLKNVTKTYKMGE------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD   74 (235)
T ss_dssp             CEEEEEEEEEEEETT------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH
T ss_pred             CEEEEEEEEEeCCCC------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCH
Confidence            478999999997422      0123567778999999999999999999999999999866    667777765532111


Q ss_pred             c-----cccccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778         78 I-----DKMSAKQPLNDEDRRPWLNNINRIIHQL  106 (433)
Q Consensus        78 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (433)
                      .     .....++.+|++...+.++..+++....
T Consensus        75 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~  108 (235)
T 3tif_A           75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPL  108 (235)
T ss_dssp             HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred             HHHHHHhhccEEEEecCCccCCCCcHHHHHHHHH
Confidence            0     1123678888876666566666665543

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.71  E-value=2.8e-09  Score=104.06  Aligned_cols=100  Identities=14%  Similarity=0.130  Sum_probs=73.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.|+...      -....++++++++.+|.+++|+|+|||||||+.+.|+..+    |...+++.++.....
T Consensus        24 mi~v~~ls~~y~~~~------~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~   97 (366)
T 3tui_C           24 MIKLSNITKVFHQGT------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE   97 (366)
T ss_dssp             CEEEEEEEEEEECSS------SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCH
T ss_pred             eEEEEeEEEEeCCCC------CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH
Confidence            689999999997421      1134677788999999999999999999999999999966    667787776643211


Q ss_pred             --c--cccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778         78 --I--DKMSAKQPLNDEDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        78 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (433)
                        .  .....++.||+....+.++..+++.....
T Consensus        98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~  131 (366)
T 3tui_C           98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE  131 (366)
T ss_dssp             HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred             HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHH
Confidence              0  12346888998776666667677665543

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=98.71  E-value=5.4e-09  Score=104.31  Aligned_cols=72  Identities=25%  Similarity=0.302  Sum_probs=61.0

Q ss_pred             Hhhhcceeeccccc-CCCCCCceeeeC-CCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHH
Q psy16778        221 FALKVLRIRPRVMR-DLSKRTLVTDAL-GHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELA  298 (433)
Q Consensus       221 ~a~~~~~l~pr~l~-~~~~~d~~~~~~-g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva  298 (433)
                      .+|++|.|+|+++. +++++|++|+++ |.+++.||++||+++    ++++|.  +.++.++|...+++  ++.++|+++
T Consensus        10 ~~fd~v~l~p~~~~~~~~~vdlst~l~~g~~l~~Pii~Apm~~----~~~~el--a~a~a~aGglg~i~--~~~s~e~~~   81 (404)
T 1eep_A           10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDT----VTESQM--AIAIAKEGGIGIIH--KNMSIEAQR   81 (404)
T ss_dssp             CCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTT----TCSHHH--HHHHHHHTSEEEEC--SSSCHHHHH
T ss_pred             CCcccEEEccCCCCcCccccccceeccCCcccCCCEEeCCCCC----CCCHHH--HHHHHHCCCEEEEC--CCCCHHHHH
Confidence            57999999999998 889999999999 999999999999986    566666  45578888887776  567899886


Q ss_pred             Hh
Q psy16778        299 EK  300 (433)
Q Consensus       299 ~~  300 (433)
                      +.
T Consensus        82 ~~   83 (404)
T 1eep_A           82 KE   83 (404)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.70  E-value=1.7e-09  Score=104.11  Aligned_cols=39  Identities=28%  Similarity=0.331  Sum_probs=33.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CeEEeCCCCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG-------VKFIDGDHLH   73 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg-------~~~id~D~~~   73 (433)
                      ..++.+|+|+|++||||||+++.|++.++       +.+++.|...
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~  122 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence            37789999999999999999999999876       5667777654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.70  E-value=4.3e-08  Score=86.85  Aligned_cols=111  Identities=16%  Similarity=0.162  Sum_probs=61.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCCCcCChhHHHH-------------------
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN-------------------   98 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------   98 (433)
                      .|+|+||||||||||.+.|.+.+.  +.+.-+...+.+.....-...+-|-.  ...+...                   
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs--~~eF~~~i~~g~flE~~~~~g~~YGt   80 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVS--VDEFKSMIKNNEFIEWAQFSGNYYGS   80 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECC--HHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeec--HHHHHHHHHcCCEEEEEEEcCceeee
Confidence            489999999999999999988763  22322222222211111111122211  1111111                   


Q ss_pred             HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEE-EcCHHHHHHHHHHhhC
Q psy16778         99 INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYL-KAEFGVILSRLQKRAE  155 (433)
Q Consensus        99 ~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L-~~~~e~l~~Rl~~R~~  155 (433)
                      ....+...+.+|..+|++...   .....+++..+  ..+||+ -.|.++|.+|+.+|+.
T Consensus        81 ~~~~v~~~l~~g~~vil~id~---~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~  137 (186)
T 1ex7_A           81 TVASVKQVSKSGKTCILDIDM---QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT  137 (186)
T ss_dssp             EHHHHHHHHHHTSEEEEECCH---HHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC
T ss_pred             ecceeeehhhCCCEEEecCCH---HHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCC
Confidence            123355566678888887653   22233444322  345555 5568999999999974

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.70  E-value=1.7e-09  Score=101.48  Aligned_cols=93  Identities=23%  Similarity=0.218  Sum_probs=65.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC-ccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH-PQS   76 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~-~~~   76 (433)
                      +++++||++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++. ...
T Consensus        24 ~l~i~~l~~~y~~----------~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~   93 (263)
T 2olj_A           24 MIDVHQLKKSFGS----------LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDT   93 (263)
T ss_dssp             SEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTC
T ss_pred             eEEEEeEEEEECC----------EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccc
Confidence            5889999999975          23566777999999999999999999999999999866    56677665542 000


Q ss_pred             c--ccccccCCCCCCcCChhHHHHHHHHHH
Q psy16778         77 N--IDKMSAKQPLNDEDRRPWLNNINRIIH  104 (433)
Q Consensus        77 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (433)
                      .  ......++.+|+......++..+++..
T Consensus        94 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~  123 (263)
T 2olj_A           94 NLNKVREEVGMVFQRFNLFPHMTVLNNITL  123 (263)
T ss_dssp             CHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred             cHHHHhCcEEEEeCCCcCCCCCCHHHHHHH
Confidence            0  011235677777554444455555544

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.70  E-value=2.2e-09  Score=100.56  Aligned_cols=93  Identities=15%  Similarity=0.226  Sum_probs=66.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS-   76 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~-   76 (433)
                      +++++||++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++.... 
T Consensus         7 ~l~i~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~   76 (257)
T 1g6h_A            7 ILRTENIVKYFGE----------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP   76 (257)
T ss_dssp             EEEEEEEEEEETT----------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH
T ss_pred             EEEEeeeEEEECC----------EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH
Confidence            5889999999975          34677888999999999999999999999999999866    66677665543211 


Q ss_pred             -cccccccCCCCCCcCChhHHHHHHHHHH
Q psy16778         77 -NIDKMSAKQPLNDEDRRPWLNNINRIIH  104 (433)
Q Consensus        77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (433)
                       .......++.+|+......++..+++..
T Consensus        77 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~  105 (257)
T 1g6h_A           77 AELYHYGIVRTFQTPQPLKEMTVLENLLI  105 (257)
T ss_dssp             HHHHHHTEEECCCCCGGGGGSBHHHHHHG
T ss_pred             HHHHhCCEEEEccCCccCCCCcHHHHHHH
Confidence             0112235778887654444555555543

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.69  E-value=2e-09  Score=105.06  Aligned_cols=94  Identities=18%  Similarity=0.166  Sum_probs=68.6

Q ss_pred             ccccccceeee-ccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778          2 AVSNFGNWRYW-GMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS   76 (433)
Q Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~   76 (433)
                      ++++++|++.| +..          ..++++++++.+|.+++|+|+|||||||+.++|++.+    |...+++.++....
T Consensus        14 ~l~~~~l~~~y~g~~----------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~   83 (355)
T 1z47_A           14 TIEFVGVEKIYPGGA----------RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP   83 (355)
T ss_dssp             EEEEEEEEECCTTST----------TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC
T ss_pred             eEEEEEEEEEEcCCC----------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC
Confidence            68899999999 752          2455666889999999999999999999999999866    66677765553211


Q ss_pred             cccccccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778         77 NIDKMSAKQPLNDEDRRPWLNNINRIIHQL  106 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (433)
                      . .....++.+|+....+.++..+++...+
T Consensus        84 ~-~~r~ig~v~Q~~~l~~~ltv~eni~~~l  112 (355)
T 1z47_A           84 P-QKRNVGLVFQNYALFQHMTVYDNVSFGL  112 (355)
T ss_dssp             G-GGSSEEEECGGGCCCTTSCHHHHHHHHH
T ss_pred             h-hhCcEEEEecCcccCCCCCHHHHHHHHH
Confidence            1 1234578888766666666666665543

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.69  E-value=2.2e-09  Score=105.41  Aligned_cols=90  Identities=16%  Similarity=0.125  Sum_probs=61.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.|+.          ...++++++++.+|.+++|+|+|||||||+.+.|++.+    |...+++.++.....
T Consensus        11 ~l~~~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~   80 (372)
T 1v43_A           11 EVKLENLTKRFGN----------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP   80 (372)
T ss_dssp             CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG
T ss_pred             eEEEEEEEEEECC----------EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh
Confidence            4899999999975          23566677899999999999999999999999999966    667777665532111


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHH
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRI  102 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~  102 (433)
                       .....++.||+....+.++..+++
T Consensus        81 -~~r~ig~v~Q~~~l~~~ltv~eni  104 (372)
T 1v43_A           81 -KDRNISMVFQSYAVWPHMTVYENI  104 (372)
T ss_dssp             -GGGTEEEEEC------CCCHHHHH
T ss_pred             -hhCcEEEEecCcccCCCCCHHHHH
Confidence             122456777765444333444444

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.69  E-value=2.6e-09  Score=105.06  Aligned_cols=95  Identities=19%  Similarity=0.237  Sum_probs=68.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc--
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ--   75 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~--   75 (433)
                      ++++++|++.|+.          ...++++++++.+|.+++|+|+|||||||+.+.|++.+    |...+++.++...  
T Consensus         3 ~l~~~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~   72 (372)
T 1g29_1            3 GVRLVDVWKVFGE----------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEK   72 (372)
T ss_dssp             EEEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGG
T ss_pred             EEEEEeEEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccc
Confidence            5899999999975          23566677889999999999999999999999999966    6667776554320  


Q ss_pred             ---ccccccccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778         76 ---SNIDKMSAKQPLNDEDRRPWLNNINRIIHQL  106 (433)
Q Consensus        76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (433)
                         ........++.||+....+.++..+++...+
T Consensus        73 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~  106 (372)
T 1g29_1           73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL  106 (372)
T ss_dssp             TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHH
T ss_pred             cccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence               0111234578888866666666666665543

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.68  E-value=1.6e-07  Score=83.74  Aligned_cols=154  Identities=14%  Similarity=0.041  Sum_probs=87.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC---CeEEeCCCCCccccccccccCCCCCCc-----CCh-------hHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLG---VKFIDGDHLHPQSNIDKMSAKQPLNDE-----DRR-------PWLNNINR  101 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg---~~~id~D~~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~~  101 (433)
                      ...+|+|+|++||||+|+++.+.+.+|   +..+...+.++...  ....|..++..     ..+       .|.+.+..
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~--a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~   87 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQY--AQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQ   87 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHH--HHTTTCCCC-------CCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHH--HHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHh
Confidence            457999999999999999999998785   66677766554211  11223333221     111       11111111


Q ss_pred             H-----HHHhh-hCCCcEEEEcCcccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCC
Q psy16778        102 I-----IHQLN-VDNLTGVLVCSALRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEP  173 (433)
Q Consensus       102 ~-----~~~~~-~~~~~~Vi~~~~~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~  173 (433)
                      .     +.... ....+++|..+-....-.+.+++.. . +.+|++.++++++++|...+.......+   .. --++..
T Consensus        88 ~d~~~~~~~~~~~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~~Dd~e---sE-~gL~~~  163 (202)
T 3ch4_B           88 ADPGFFCRKIVEGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVDDAE---SE-CGLDNF  163 (202)
T ss_dssp             HCTTTTHHHHSBTCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTTTTTSH---HH-HTTTTC
T ss_pred             cCchHHHHHHHHhcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhccccccccc---cc-cCCCCC
Confidence            1     11111 1223456656666666667777643 2 6789999999999999432221111111   11 111221


Q ss_pred             CCCCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778        174 DPLVEPDVRTVSVNEPLEGIVSKSAIM  200 (433)
Q Consensus       174 ~~~~~~~~~~Id~~~~~ee~~~~i~~~  200 (433)
                          ..++++|.|+.+.+++..++.+.
T Consensus       164 ----~~~D~vI~Ndgt~eel~~~v~~l  186 (202)
T 3ch4_B          164 ----GDFDWVIENHGVEQRLEEQLENL  186 (202)
T ss_dssp             ----CCCSEEEEECSCHHHHHHHHHHH
T ss_pred             ----CcCCEEEEeCCCHHHHHHHHHHH
Confidence                23789999999999887776543

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=98.68  E-value=8.3e-09  Score=94.16  Aligned_cols=165  Identities=13%  Similarity=0.067  Sum_probs=76.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC----eEEe-CCCCCcccc---ccccccC-CCCCCcCCh-----hHHHHH
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGV----KFID-GDHLHPQSN---IDKMSAK-QPLNDEDRR-----PWLNNI   99 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~----~~id-~D~~~~~~~---~~~~~~~-~~~~~~~~~-----~~~~~~   99 (433)
                      ...+|+.|+|.|++||||||+++.|++.++.    .++. +..-.....   +...-.+ ..+......     ..+..+
T Consensus        17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~   96 (223)
T 3ld9_A           17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF   96 (223)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence            3567899999999999999999999998754    3222 111100000   0000001 001111100     111233


Q ss_pred             HHHHHHhhhCCCcEEEEcCc------------ccHHHHHHHHhc---CC-eEEEEEEcCHHHHHHHHHHhhCCCCC--HH
Q psy16778        100 NRIIHQLNVDNLTGVLVCSA------------LRRNYRDIIRNN---NR-VVFIYLKAEFGVILSRLQKRAEHFMP--AD  161 (433)
Q Consensus       100 ~~~~~~~~~~~~~~Vi~~~~------------~~~~~~~~l~~~---~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~--~~  161 (433)
                      .+.+...+..|..+|.|-..            ....+...+.+.   .. +++|||++|+++..+|+ +|. +...  .+
T Consensus        97 ~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rd-r~E~~~~e  174 (223)
T 3ld9_A           97 VKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKN-GYEFADME  174 (223)
T ss_dssp             HHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC------------------CHH
T ss_pred             HHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccC-ccccchHH
Confidence            44466677788666666321            122332333211   12 79999999999999999 443 2222  23


Q ss_pred             hHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        162 LLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       162 ~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      .+++..+.+..+........++||++.+++++ ++|.+.+
T Consensus       175 ~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l  213 (223)
T 3ld9_A          175 FYYRVRDGFYDIAKKNPHRCHVITDKSETYDI-DDINFVH  213 (223)
T ss_dssp             HHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHH
Confidence            33322222222111011257899998888888 7776543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.68  E-value=7.6e-08  Score=84.14  Aligned_cols=124  Identities=15%  Similarity=0.171  Sum_probs=77.7

Q ss_pred             CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhH----HHHHHHHHHHh
Q psy16778         31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPW----LNNINRIIHQL  106 (433)
Q Consensus        31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  106 (433)
                      +++++.+|.+++|+|+|||||||+++.+..  |...++.|.+.          ++.++++.....    ++.........
T Consensus         2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~d~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (171)
T 4gp7_A            2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFK--PTEVISSDFCR----------GLMSDDENDQTVTGAAFDVLHYIVSKR   69 (171)
T ss_dssp             EEEEEESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEHHHHH----------HHHCSSTTCGGGHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCEEEEEECCCCCCHHHHHHHHcc--CCeEEccHHHH----------HHhcCcccchhhHHHHHHHHHHHHHHH
Confidence            346678999999999999999999997542  45555555432          222333222111    22233334444


Q ss_pred             hhCCCcEEEEcCcccH----HHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHH
Q psy16778        107 NVDNLTGVLVCSALRR----NYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQ  166 (433)
Q Consensus       107 ~~~~~~~Vi~~~~~~~----~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~  166 (433)
                      ...+...+++......    ......+.... ..+++|+-|...+-.|.++|..+..+.+.+...
T Consensus        70 ~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~  134 (171)
T 4gp7_A           70 LQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKH  134 (171)
T ss_dssp             HHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHH
T ss_pred             HhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHH
Confidence            5566677777655332    22334444443 689999999999999998887656665555444

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.68  E-value=1.8e-09  Score=98.89  Aligned_cols=93  Identities=18%  Similarity=0.109  Sum_probs=64.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++.....
T Consensus         4 ~l~~~~l~~~y~~----------~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~   73 (224)
T 2pcj_A            4 ILRAENIKKVIRG----------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNE   73 (224)
T ss_dssp             EEEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCH
T ss_pred             EEEEEeEEEEECC----------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCH
Confidence            5899999999975          23566777899999999999999999999999999865    566676655432110


Q ss_pred             -----ccccccCCCCCCcCChhHHHHHHHHHH
Q psy16778         78 -----IDKMSAKQPLNDEDRRPWLNNINRIIH  104 (433)
Q Consensus        78 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (433)
                           ......++.+|+......++..+++..
T Consensus        74 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~  105 (224)
T 2pcj_A           74 KELSLLRNRKLGFVFQFHYLIPELTALENVIV  105 (224)
T ss_dssp             HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred             HHHHHHHhCcEEEEecCcccCCCCCHHHHHHh
Confidence                 011235677776554444445555443

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.67  E-value=1.8e-09  Score=101.33  Aligned_cols=93  Identities=15%  Similarity=0.221  Sum_probs=65.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCc---
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHP---   74 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~---   74 (433)
                      ++++++|++.||.          ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++..   
T Consensus         6 ~l~i~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~   75 (262)
T 1b0u_A            6 KLHVIDLHKRYGG----------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRD   75 (262)
T ss_dssp             CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEEC
T ss_pred             eEEEeeEEEEECC----------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccc
Confidence            5899999999975          23566777999999999999999999999999999866    566776655421   


Q ss_pred             ---------cc--cccccccCCCCCCcCChhHHHHHHHHHH
Q psy16778         75 ---------QS--NIDKMSAKQPLNDEDRRPWLNNINRIIH  104 (433)
Q Consensus        75 ---------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (433)
                               ..  .......++.+|+......++..+++..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~  116 (262)
T 1b0u_A           76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME  116 (262)
T ss_dssp             TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHH
T ss_pred             ccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHh
Confidence                     00  0011235777777555555555555544

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=98.67  E-value=1.4e-08  Score=98.66  Aligned_cols=158  Identities=13%  Similarity=0.126  Sum_probs=91.8

Q ss_pred             hhHHhhhcceeeccc--ccCCCCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHH
Q psy16778        218 FEQFALKVLRIRPRV--MRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIE  295 (433)
Q Consensus       218 ~~~~a~~~~~l~pr~--l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~e  295 (433)
                      .|..+|++|.|+||+  +++++++|++|+|+|.+++.||++||+++..      +..+++++.+.|...+.........+
T Consensus        11 ~~~~~fd~v~l~p~~~~~~~~~~vdl~t~i~g~~l~~Pi~~a~mag~s------~~~la~a~~~~gg~g~~~~~~~~~~~   84 (336)
T 1ypf_A           11 GNVFDYEDIQLIPAKCIVNSRSECDTTVTLGKHKFKLPVVPANMQTII------DERIATYLAENNYFYIMHRFQPEKRI   84 (336)
T ss_dssp             -CCCCGGGEEECCCCCCCSSGGGCBCCEEETTEEESSSEEECSSTTTC------CHHHHHHHHHTTCCCCCCCSSGGGHH
T ss_pred             cccCCcceEEEecccCCCCCcccCcceEEECCEEecCcEEECCCCCCC------hHHHHHHHHhCCCEEEecCCCCHHHH
Confidence            356789999999999  7899999999999999999999999987532      24455554555443322222222233


Q ss_pred             HHHHh-C-CCCcceEEEeeccCHHHHHHHHHHHHHcC--CcEEEEeeeecccCccccccccccCCCccch---HHHHHhh
Q psy16778        296 ELAEK-T-PQTTKWFQLYIYRDREITKSLVQRAEKAG--YKALVLTVDTNVFGTRYADIRNKFNMPSHLN---IEELAEK  368 (433)
Q Consensus       296 eva~~-~-~~~~~w~qly~~~d~~~~~~~~~~A~~ag--~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s---~e~i~~~  368 (433)
                      +..+. . .+-+.-.+  ...+.+ ..+.++.+.++|  +..+.++.  . .|         .   +...   ++.+.+.
T Consensus        85 ~~i~~~~~~g~~v~v~--~g~~~~-~~~~a~~~~~~g~~~~~i~i~~--~-~G---------~---~~~~~~~i~~lr~~  146 (336)
T 1ypf_A           85 SFIRDMQSRGLIASIS--VGVKED-EYEFVQQLAAEHLTPEYITIDI--A-HG---------H---SNAVINMIQHIKKH  146 (336)
T ss_dssp             HHHHHHHHTTCCCEEE--ECCSHH-HHHHHHHHHHTTCCCSEEEEEC--S-SC---------C---SHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCeEEEe--CCCCHH-HHHHHHHHHhcCCCCCEEEEEC--C-CC---------C---cHHHHHHHHHHHHh
Confidence            32221 1 11122233  222322 224566666777  66665443  1 11         1   1222   3333343


Q ss_pred             CCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778        369 TPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       369 ~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT  405 (433)
                      .+.++.      .+....+.+.+++|+++|+++|+++
T Consensus       147 ~~~~~v------i~G~v~s~e~A~~a~~aGad~Ivvs  177 (336)
T 1ypf_A          147 LPESFV------IAGNVGTPEAVRELENAGADATKVG  177 (336)
T ss_dssp             CTTSEE------EEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred             CCCCEE------EECCcCCHHHHHHHHHcCCCEEEEe
Confidence            332221      1222567899999999999999994

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.65  E-value=1.5e-09  Score=106.02  Aligned_cols=96  Identities=15%  Similarity=0.063  Sum_probs=67.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc--
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ--   75 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~--   75 (433)
                      ++++++|++.|+....        ..++++++++.+|.+++|+|+|||||||+.+.|++.+    |...+++.++...  
T Consensus         3 ~l~i~~l~~~y~~~~~--------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~   74 (353)
T 1oxx_K            3 RIIVKNVSKVFKKGKV--------VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGK   74 (353)
T ss_dssp             CEEEEEEEEEEGGGTE--------EEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTE
T ss_pred             EEEEEeEEEEECCEee--------eeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECccccc
Confidence            5899999999986210        1456667889999999999999999999999999865    6667766554220  


Q ss_pred             --ccccccccCCCCCCcCChhHHHHHHHHHHH
Q psy16778         76 --SNIDKMSAKQPLNDEDRRPWLNNINRIIHQ  105 (433)
Q Consensus        76 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (433)
                        ........++.+|+....+.++..+++...
T Consensus        75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~  106 (353)
T 1oxx_K           75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFP  106 (353)
T ss_dssp             ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGG
T ss_pred             ccCChhhCCEEEEeCCCccCCCCCHHHHHHHH
Confidence              011122457788876666666666666543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.64  E-value=2.9e-09  Score=103.72  Aligned_cols=92  Identities=21%  Similarity=0.211  Sum_probs=67.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      +++++||++.|+.          . .++++++++.+|.+++|+|+|||||||+.+.|++.+    |...+++.++.....
T Consensus         1 ml~~~~l~~~y~~----------~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~   69 (348)
T 3d31_A            1 MIEIESLSRKWKN----------F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP   69 (348)
T ss_dssp             CEEEEEEEEECSS----------C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH
T ss_pred             CEEEEEEEEEECC----------E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch
Confidence            4789999999975          2 455566889999999999999999999999999966    666777655532111


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHHH
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIHQ  105 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (433)
                       .....++.+|+....+.++..+++...
T Consensus        70 -~~r~ig~v~Q~~~l~~~ltv~enl~~~   96 (348)
T 3d31_A           70 -EKHDIAFVYQNYSLFPHMNVKKNLEFG   96 (348)
T ss_dssp             -HHHTCEEECTTCCCCTTSCHHHHHHHH
T ss_pred             -hhCcEEEEecCcccCCCCCHHHHHHHH
Confidence             123467888886666665666665544

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.64  E-value=2.6e-09  Score=98.92  Aligned_cols=92  Identities=15%  Similarity=0.258  Sum_probs=64.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++.....
T Consensus         6 ~l~~~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~   75 (240)
T 1ji0_A            6 VLEVQSLHVYYGA----------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA   75 (240)
T ss_dssp             EEEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH
T ss_pred             eEEEEeEEEEECC----------eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCH
Confidence            5789999999975          23566777899999999999999999999999999865    566676655432111


Q ss_pred             --ccccccCCCCCCcCChhHHHHHHHHH
Q psy16778         78 --IDKMSAKQPLNDEDRRPWLNNINRII  103 (433)
Q Consensus        78 --~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (433)
                        ......++.+|+......++..+++.
T Consensus        76 ~~~~~~~i~~v~q~~~l~~~ltv~enl~  103 (240)
T 1ji0_A           76 HVINRMGIALVPEGRRIFPELTVYENLM  103 (240)
T ss_dssp             HHHHHTTEEEECSSCCCCTTSBHHHHHH
T ss_pred             HHHHhCCEEEEecCCccCCCCcHHHHHH
Confidence              11123566777654444444444443

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=98.61  E-value=1.5e-09  Score=101.87  Aligned_cols=68  Identities=24%  Similarity=0.207  Sum_probs=43.5

Q ss_pred             eEEEEEEcCHHHHHHHHHHhhCC---CCCHHhHH---HHHhhcc------CCCC-CCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778        134 VVFIYLKAEFGVILSRLQKRAEH---FMPADLLE---SQFQTLE------EPDP-LVEPDVRTVSVNEPLEGIVSKSAIM  200 (433)
Q Consensus       134 ~~vv~L~~~~e~l~~Rl~~R~~~---~~~~~~l~---~~~~~~~------~~~~-~~~~~~~~Id~~~~~ee~~~~i~~~  200 (433)
                      .++|||+++++++.+|+.+|+..   ....+.+.   ..++.+.      +.+. +.+...++||++.+++++.+.|.+.
T Consensus       176 d~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~~~eev~~~I~~~  255 (263)
T 1p5z_B          176 DGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEK  255 (263)
T ss_dssp             SEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHHHHH
T ss_pred             CeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCCCHHHHHHHHHHH
Confidence            68999999999999999888521   11222222   2333221      1111 1123478899989999999888765


Q ss_pred             C
Q psy16778        201 P  201 (433)
Q Consensus       201 l  201 (433)
                      +
T Consensus       256 l  256 (263)
T 1p5z_B          256 V  256 (263)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.61  E-value=9.5e-09  Score=95.09  Aligned_cols=88  Identities=20%  Similarity=0.199  Sum_probs=62.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      +++++||++.|+.            .++++++++.+ .+++|+|++||||||+.+.|++.+    |...+++.++.....
T Consensus         1 ml~~~~l~~~y~~------------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~   67 (240)
T 2onk_A            1 MFLKVRAEKRLGN------------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP   67 (240)
T ss_dssp             CCEEEEEEEEETT------------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT
T ss_pred             CEEEEEEEEEeCC------------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCch
Confidence            4789999999974            15566688999 999999999999999999999866    566776655432111


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHH
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRII  103 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (433)
                       .....++.+|+......++..+++.
T Consensus        68 -~~~~i~~v~q~~~l~~~ltv~enl~   92 (240)
T 2onk_A           68 -ERRGIGFVPQDYALFPHLSVYRNIA   92 (240)
T ss_dssp             -TTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred             -hhCcEEEEcCCCccCCCCcHHHHHH
Confidence             1224577888765544444544443

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.58  E-value=9.2e-09  Score=95.84  Aligned_cols=82  Identities=21%  Similarity=0.201  Sum_probs=58.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--h----CCeEEeCCCCCcc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR--L----GVKFIDGDHLHPQ   75 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~--l----g~~~id~D~~~~~   75 (433)
                      +++++||++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.  +    |...+++.++...
T Consensus         3 ~l~~~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~   72 (250)
T 2d2e_A            3 QLEIRDLWASIDG----------ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILEL   72 (250)
T ss_dssp             EEEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTS
T ss_pred             eEEEEeEEEEECC----------EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCC
Confidence            5899999999975          2356677799999999999999999999999999995  2    5666766554321


Q ss_pred             cc--ccccccCCCCCCcCCh
Q psy16778         76 SN--IDKMSAKQPLNDEDRR   93 (433)
Q Consensus        76 ~~--~~~~~~~~~~~~~~~~   93 (433)
                      ..  ......++.+|++...
T Consensus        73 ~~~~~~~~~i~~v~q~~~~~   92 (250)
T 2d2e_A           73 SPDERARKGLFLAFQYPVEV   92 (250)
T ss_dssp             CHHHHHHTTBCCCCCCCC-C
T ss_pred             CHHHHHhCcEEEeccCCccc
Confidence            11  1112245677765433

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.57  E-value=1.2e-07  Score=85.46  Aligned_cols=39  Identities=31%  Similarity=0.499  Sum_probs=33.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLH   73 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~   73 (433)
                      ..+|.+|+|+|+|||||||+++.|++.+.     ..++..|...
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~   62 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH   62 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence            56789999999999999999999999884     5677777654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.56  E-value=8.2e-09  Score=93.28  Aligned_cols=65  Identities=14%  Similarity=0.018  Sum_probs=40.4

Q ss_pred             eEEEEEEcCHHHHHHHHHHhhCC-------C-CC-HHh---HHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778        134 VVFIYLKAEFGVILSRLQKRAEH-------F-MP-ADL---LESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIM  200 (433)
Q Consensus       134 ~~vv~L~~~~e~l~~Rl~~R~~~-------~-~~-~~~---l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~  200 (433)
                      ..+|||+++++++.+|+.+|.+.       . .. .+.   +..++..+...+  .....++||++.+++++.++|...
T Consensus       134 d~~i~l~~~~~~~~~R~~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~vId~~~~~~~v~~~i~~~  210 (214)
T 1gtv_A          134 DWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQG--WGGRWLVVGADVDPGRLAATLAPP  210 (214)
T ss_dssp             EEEEEEEEEHHHHHHHHHHHHHEBBEEEEEEEEEEHHHHHHHHHHHHHHHHEE--EEEEEEEEEEEEBHHHHHHHHC--
T ss_pred             CEEEEEeCCHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHhC--CCCCEEEEeCCCCHHHHHHHhcCC
Confidence            67999999999999999998641       1 10 122   222332322211  001447888889999999988543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.56  E-value=1.4e-06  Score=79.23  Aligned_cols=41  Identities=29%  Similarity=0.406  Sum_probs=27.6

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEE
Q psy16778         27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-GVKFI   67 (433)
Q Consensus        27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-g~~~i   67 (433)
                      .+.++++++.+|.+++|+|++||||||+.+.|++.+ |...+
T Consensus        12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~   53 (218)
T 1z6g_A           12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYF   53 (218)
T ss_dssp             ----------CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEE
T ss_pred             cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEE
Confidence            577888999999999999999999999999999977 34444

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.56  E-value=1.5e-08  Score=93.91  Aligned_cols=61  Identities=28%  Similarity=0.210  Sum_probs=50.4

Q ss_pred             ccccccceeee-ccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYW-GMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++||++.| +..          ..++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus         1 ml~~~~l~~~y~~~~----------~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~   66 (243)
T 1mv5_A            1 MLSARHVDFAYDDSE----------QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI   66 (243)
T ss_dssp             CEEEEEEEECSSSSS----------CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEES
T ss_pred             CEEEEEEEEEeCCCC----------ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh
Confidence            47899999999 432          2456677889999999999999999999999999866    7777776554

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.56  E-value=5.8e-09  Score=94.78  Aligned_cols=87  Identities=14%  Similarity=0.013  Sum_probs=61.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      ++++++|++.|+. .          .+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++. .  
T Consensus        10 ~l~~~~ls~~y~~-~----------il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-~--   75 (214)
T 1sgw_A           10 KLEIRDLSVGYDK-P----------VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-K--   75 (214)
T ss_dssp             EEEEEEEEEESSS-E----------EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-G--
T ss_pred             eEEEEEEEEEeCC-e----------EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-h--
Confidence            5789999999974 2          345566889999999999999999999999999866    55666654442 1  


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHH
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRII  103 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (433)
                       .....++.+|+......++..+++.
T Consensus        76 -~~~~i~~v~q~~~~~~~~tv~enl~  100 (214)
T 1sgw_A           76 -VKGKIFFLPEEIIVPRKISVEDYLK  100 (214)
T ss_dssp             -GGGGEEEECSSCCCCTTSBHHHHHH
T ss_pred             -hcCcEEEEeCCCcCCCCCCHHHHHH
Confidence             1223566777654444444444443

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.55  E-value=4.9e-08  Score=92.92  Aligned_cols=38  Identities=26%  Similarity=0.491  Sum_probs=31.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCc
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHP   74 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~   74 (433)
                      ++.+|+|+|++||||||+++.|++.+|     +.++++|.+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            567999999999999999999999887     78999999985

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=98.55  E-value=5e-08  Score=99.46  Aligned_cols=37  Identities=8%  Similarity=0.087  Sum_probs=33.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCC-------eEEeCCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGV-------KFIDGDH   71 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~-------~~id~D~   71 (433)
                      .+++++|+|+|+|||||||+|+.|+++|+.       .++|+|+
T Consensus       392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             cccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            457799999999999999999999999986       6888887

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.54  E-value=1.1e-08  Score=96.13  Aligned_cols=61  Identities=21%  Similarity=0.137  Sum_probs=50.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      ++++++|++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus        11 ~l~~~~l~~~~~~----------~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~   75 (266)
T 4g1u_C           11 LLEASHLHYHVQQ----------QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL   75 (266)
T ss_dssp             EEEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEET
T ss_pred             eEEEEeEEEEeCC----------eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEC
Confidence            5789999999986          33566777889999999999999999999999999865    5566665554

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.54  E-value=1e-08  Score=96.95  Aligned_cols=61  Identities=18%  Similarity=0.075  Sum_probs=51.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++||++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++
T Consensus        21 ~l~~~~l~~~y~~----------~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~   85 (279)
T 2ihy_A           21 LIQLDQIGRMKQG----------KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMP   85 (279)
T ss_dssp             EEEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCC
T ss_pred             eEEEEeEEEEECC----------EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEc
Confidence            6889999999976          23566777999999999999999999999999999866    5566666544

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.54  E-value=8.6e-08  Score=97.53  Aligned_cols=117  Identities=15%  Similarity=0.198  Sum_probs=67.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccc---cC-CCCCCcCChhHHHHHHHH-------HH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMS---AK-QPLNDEDRRPWLNNINRI-------IH  104 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~-------~~  104 (433)
                      +++.+|+|+|+|||||||+++.|++.+++.++++|.+..........   .. ..|. ..+...++..+..       +.
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd-~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFL-PDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            56679999999999999999999999876555555432111001100   00 1122 2233222222222       12


Q ss_pred             Hhh--hCCCcEEEEcCcccHHHHHHH----HhcCCeEEEEEE---cCHHHHHHHHHHhh
Q psy16778        105 QLN--VDNLTGVLVCSALRRNYRDII----RNNNRVVFIYLK---AEFGVILSRLQKRA  154 (433)
Q Consensus       105 ~~~--~~~~~~Vi~~~~~~~~~~~~l----~~~~~~~vv~L~---~~~e~l~~Rl~~R~  154 (433)
                      ..+  ..|..+|++++.....+++.+    ++.. ..++||+   .+++.+.+|+..+.
T Consensus       116 ~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~-~~vv~l~~~~~~~~~i~~r~~~~~  173 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNG-YKTFFVESICVDPEVIAANIVQVK  173 (469)
T ss_dssp             HHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHT-CEEEEEEECCCCHHHHHHHHHHHT
T ss_pred             HHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcC-CcEEEEEEECCCHHHHHHHHHHhh
Confidence            233  456678889887766655544    3332 3567777   56888888887654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.52  E-value=8.4e-07  Score=85.66  Aligned_cols=128  Identities=13%  Similarity=0.190  Sum_probs=69.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC--Ccccccc------ccccCCC--------CCCcCC-hhHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL--HPQSNID------KMSAKQP--------LNDEDR-RPWLNNIN  100 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~--~~~~~~~------~~~~~~~--------~~~~~~-~~~~~~~~  100 (433)
                      +.+|+|+|++||||||+++.|++.++..+|+.|.+  +......      ....+..        +..... ..|.+...
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~   86 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAE   86 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHH
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHH
Confidence            46899999999999999999999999999999988  3221100      0001111        111111 22223333


Q ss_pred             HHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEE-cCHHH---HHHHHHHhhCCCCCHHhHHHHHhhccC
Q psy16778        101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLK-AEFGV---ILSRLQKRAEHFMPADLLESQFQTLEE  172 (433)
Q Consensus       101 ~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~-~~~e~---l~~Rl~~R~~~~~~~~~l~~~~~~~~~  172 (433)
                      ..+......+..+|+.+|..  .+.+.+...   +-+|.+ ++++.   +.+|+. | -.....+.+...+...++
T Consensus        87 ~~i~~i~~~g~~~IlvGGt~--ly~~~l~~~---l~~~~~~~d~~~~~Rlrrrl~-r-~~~~G~~~l~~~L~~vdP  155 (340)
T 3d3q_A           87 KYIKDITRRGKVPIIAGGTG--LYIQSLLYN---YAFEDESISEDKMKQVKLKLK-E-LEHLNNNKLHEYLASFDK  155 (340)
T ss_dssp             HHHHHHHHTTCEEEEECCCH--HHHHHHHBC---SCCC---CCHHHHHHHHHHHH-T-TSSSCHHHHHHHHHHHCH
T ss_pred             HHHHHHHhCCCcEEEECChh--hhHHHHHhc---ccccCCCCChHHHHHHHHHHH-H-HHhcCHHHHHHHHHhhCc
Confidence            34444445665555544432  455556554   236677 77773   444553 2 222234455555555544

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.50  E-value=1.3e-07  Score=83.25  Aligned_cols=27  Identities=26%  Similarity=0.490  Sum_probs=24.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      +|.+++|+|+|||||||+++.|++.+.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            578999999999999999999999763

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.49  E-value=1.5e-08  Score=95.57  Aligned_cols=80  Identities=16%  Similarity=0.059  Sum_probs=58.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc-c
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ-S   76 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~-~   76 (433)
                      +++++||++.|+...         ..++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++... .
T Consensus         7 ~l~i~~ls~~y~~~~---------~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~   77 (275)
T 3gfo_A            7 ILKVEELNYNYSDGT---------HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK   77 (275)
T ss_dssp             EEEEEEEEEECTTSC---------EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHH
T ss_pred             EEEEEEEEEEECCCC---------eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccc
Confidence            478999999997421         2566777999999999999999999999999999866    6667777655211 0


Q ss_pred             c--ccccccCCCCCCc
Q psy16778         77 N--IDKMSAKQPLNDE   90 (433)
Q Consensus        77 ~--~~~~~~~~~~~~~   90 (433)
                      .  ......++.+|++
T Consensus        78 ~~~~~~~~ig~v~Q~~   93 (275)
T 3gfo_A           78 GIMKLRESIGIVFQDP   93 (275)
T ss_dssp             HHHHHHHSEEEECSSG
T ss_pred             cHHHHhCcEEEEEcCc
Confidence            0  0122356777764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.48  E-value=2.4e-08  Score=92.25  Aligned_cols=53  Identities=15%  Similarity=0.157  Sum_probs=44.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++|++.|+...        ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         3 ~l~~~~l~~~y~~~~--------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A            3 SITVRNATFTWARSD--------PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CEEEEEEEEESCTTS--------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             eEEEEEEEEEeCCCC--------CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            589999999997311        12466677889999999999999999999999999865

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.44  E-value=3.5e-08  Score=97.48  Aligned_cols=82  Identities=18%  Similarity=0.001  Sum_probs=58.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCcccc-
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSN-   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~-   77 (433)
                      .+++++|++.|+...        ...++++++++.+|.+++|+|+|||||||+.++|++.+   |...+++.++..... 
T Consensus        19 ~i~~~~l~~~y~~~~--------~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~   90 (390)
T 3gd7_A           19 QMTVKDLTAKYTEGG--------NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLE   90 (390)
T ss_dssp             CEEEEEEEEESSSSS--------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHH
T ss_pred             eEEEEEEEEEecCCC--------eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChH
Confidence            578999999994211        23566677899999999999999999999999999865   666777766542111 


Q ss_pred             ccccccCCCCCCcC
Q psy16778         78 IDKMSAKQPLNDED   91 (433)
Q Consensus        78 ~~~~~~~~~~~~~~   91 (433)
                      ......++.||+..
T Consensus        91 ~~rr~ig~v~Q~~~  104 (390)
T 3gd7_A           91 QWRKAFGVIPQKVF  104 (390)
T ss_dssp             HHHHTEEEESCCCC
T ss_pred             HHhCCEEEEcCCcc
Confidence            01123567777653

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.43  E-value=9.3e-08  Score=85.82  Aligned_cols=40  Identities=30%  Similarity=0.360  Sum_probs=32.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CC--eEEeCCCCCc
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL---GV--KFIDGDHLHP   74 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l---g~--~~id~D~~~~   74 (433)
                      ..++.+|+|+|++||||||+++.|++.+   |.  .+++.|.+..
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~   63 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV   63 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence            5678999999999999999999999976   43  3456676543

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.42  E-value=7e-07  Score=85.64  Aligned_cols=37  Identities=24%  Similarity=0.381  Sum_probs=34.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH   73 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~   73 (433)
                      ++.+|+|+|++||||||+++.|+++++..+++.|.+.
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q   40 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL   40 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence            3468999999999999999999999999999999875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.41  E-value=6.1e-08  Score=91.13  Aligned_cols=61  Identities=31%  Similarity=0.263  Sum_probs=50.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL------GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id~D~~   72 (433)
                      ++++++|++.|+.          ...++++++++.+|.+++|+|++||||||+.+.|++.+      |...+++.++
T Consensus        20 ~l~~~~l~~~y~~----------~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i   86 (267)
T 2zu0_C           20 MLSIKDLHVSVED----------KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL   86 (267)
T ss_dssp             CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred             eEEEEeEEEEECC----------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence            5889999999975          23566777999999999999999999999999999952      5556665444

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=98.40  E-value=1.1e-06  Score=80.93  Aligned_cols=30  Identities=23%  Similarity=0.166  Sum_probs=26.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-CCeE
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL-GVKF   66 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l-g~~~   66 (433)
                      +|+.|+|.|.+||||||+++.|++.+ +..+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~   31 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence            46899999999999999999999998 5544

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.40  E-value=9.7e-08  Score=89.70  Aligned_cols=83  Identities=18%  Similarity=0.151  Sum_probs=57.9

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS   76 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~   76 (433)
                      |+++++||++.|+....     .....++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++... 
T Consensus         1 ~~l~~~~l~~~y~~~~~-----~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~-   74 (266)
T 2yz2_A            1 MRIEVVNVSHIFHRGTP-----LEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY-   74 (266)
T ss_dssp             CCEEEEEEEEEESTTST-----TCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH-
T ss_pred             CEEEEEEEEEEecCCCc-----cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH-
Confidence            67899999999972000     0012466677999999999999999999999999999865    5566666544211 


Q ss_pred             cccccccCCCCCCc
Q psy16778         77 NIDKMSAKQPLNDE   90 (433)
Q Consensus        77 ~~~~~~~~~~~~~~   90 (433)
                      . .....++.+|++
T Consensus        75 ~-~~~~i~~v~q~~   87 (266)
T 2yz2_A           75 E-IRRNIGIAFQYP   87 (266)
T ss_dssp             H-HGGGEEEECSSG
T ss_pred             H-hhhhEEEEeccc
Confidence            1 112346677763

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.39  E-value=4.4e-08  Score=92.29  Aligned_cols=84  Identities=19%  Similarity=0.127  Sum_probs=58.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS-   76 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~-   76 (433)
                      ++++++|++.|+...       +...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++.... 
T Consensus        16 ~l~~~~l~~~y~~~~-------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~   88 (271)
T 2ixe_A           16 LVKFQDVSFAYPNHP-------NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH   88 (271)
T ss_dssp             CEEEEEEEECCTTCT-------TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCH
T ss_pred             eEEEEEEEEEeCCCC-------CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCH
Confidence            578999999997410       012456677889999999999999999999999999966    66677665543210 


Q ss_pred             cccccccCCCCCCcCC
Q psy16778         77 NIDKMSAKQPLNDEDR   92 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~   92 (433)
                      .......++.+|+...
T Consensus        89 ~~~~~~i~~v~Q~~~l  104 (271)
T 2ixe_A           89 HYLHTQVAAVGQEPLL  104 (271)
T ss_dssp             HHHHHHEEEECSSCCC
T ss_pred             HHHhccEEEEecCCcc
Confidence            0011234666666543

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.37  E-value=4.4e-08  Score=91.00  Aligned_cols=80  Identities=23%  Similarity=0.137  Sum_probs=56.1

Q ss_pred             cccccceeee-c-cCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778          3 VSNFGNWRYW-G-MWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS   76 (433)
Q Consensus         3 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~   76 (433)
                      +++++|++.| + .          ...++++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++....
T Consensus         8 ~~~~~l~~~y~~~~----------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~   77 (247)
T 2ff7_A            8 ITFRNIRFRYKPDS----------PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD   77 (247)
T ss_dssp             EEEEEEEEESSTTS----------CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC
T ss_pred             eeEEEEEEEeCCCC----------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCC
Confidence            5788999999 3 3          23566777999999999999999999999999999866    56667665543210


Q ss_pred             -cccccccCCCCCCcCC
Q psy16778         77 -NIDKMSAKQPLNDEDR   92 (433)
Q Consensus        77 -~~~~~~~~~~~~~~~~   92 (433)
                       .......++.+|++..
T Consensus        78 ~~~~~~~i~~v~Q~~~l   94 (247)
T 2ff7_A           78 PNWLRRQVGVVLQDNVL   94 (247)
T ss_dssp             HHHHHHHEEEECSSCCC
T ss_pred             HHHHHhcEEEEeCCCcc
Confidence             0011234666666443

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.35  E-value=5.8e-08  Score=89.17  Aligned_cols=53  Identities=13%  Similarity=0.139  Sum_probs=44.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++|++.|+...        ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         6 ~l~~~~l~~~y~~~~--------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A            6 EVVMENVTAFWEEGG--------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEEEEEECSSTTS--------CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eEEEEEEEEEeCCCC--------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            678999999995211        12466677889999999999999999999999999865

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.33  E-value=4.8e-08  Score=93.46  Aligned_cols=81  Identities=21%  Similarity=0.107  Sum_probs=58.2

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      .+++++|++.|+..         ...+.++++++.+|.+++|+|++||||||+.+.|++.+    |...+++.++.....
T Consensus        53 ~i~~~~vs~~y~~~---------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~  123 (306)
T 3nh6_A           53 RIEFENVHFSYADG---------RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ  123 (306)
T ss_dssp             CEEEEEEEEESSTT---------CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCH
T ss_pred             eEEEEEEEEEcCCC---------CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCH
Confidence            37889999999631         12566777999999999999999999999999999866    667777766542110


Q ss_pred             -ccccccCCCCCCcC
Q psy16778         78 -IDKMSAKQPLNDED   91 (433)
Q Consensus        78 -~~~~~~~~~~~~~~   91 (433)
                       ......++.+|++.
T Consensus       124 ~~~r~~i~~v~Q~~~  138 (306)
T 3nh6_A          124 ASLRSHIGVVPQDTV  138 (306)
T ss_dssp             HHHHHTEEEECSSCC
T ss_pred             HHHhcceEEEecCCc
Confidence             01123466666543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.33  E-value=7e-08  Score=89.96  Aligned_cols=51  Identities=20%  Similarity=0.114  Sum_probs=44.3

Q ss_pred             ccccccceeeec-cCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWG-MWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++|++.|+ .          ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         4 ~l~i~~l~~~y~~~----------~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C            4 ALSVENLGFYYQAE----------NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEEEEEEEETTT----------TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             eEEEeeEEEEeCCC----------CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            589999999997 4          12466677889999999999999999999999999865

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.33  E-value=6.5e-06  Score=73.39  Aligned_cols=29  Identities=28%  Similarity=0.413  Sum_probs=26.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      ..+|..|+|+||+|||||||.+.|.+.+.
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            45788999999999999999999999774

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.31  E-value=9.1e-06  Score=72.55  Aligned_cols=28  Identities=32%  Similarity=0.386  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      ++|..++|+|+|||||||+.+.|.+.+.
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4678999999999999999999998763

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.28  E-value=2.4e-07  Score=86.65  Aligned_cols=64  Identities=23%  Similarity=0.095  Sum_probs=49.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~   72 (433)
                      ++++++|++.|+...       +...++++++++.+|.+++|+|++||||||+.+.|++.+   |...+++.++
T Consensus        17 ~l~i~~l~~~y~~~~-------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i   83 (260)
T 2ghi_A           17 NIEFSDVNFSYPKQT-------NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNV   83 (260)
T ss_dssp             CEEEEEEEECCTTCC-------SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEG
T ss_pred             eEEEEEEEEEeCCCC-------cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEh
Confidence            678999999997521       012456677889999999999999999999999999865   4455555443

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=98.28  E-value=1.4e-06  Score=80.37  Aligned_cols=34  Identities=18%  Similarity=0.193  Sum_probs=30.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL   72 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~   72 (433)
                      ++|+|+|++||||||+++.|.+++|++++.....
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~   35 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGP   35 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChH
Confidence            5899999999999999999999899998876644

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.26  E-value=3.8e-07  Score=95.26  Aligned_cols=84  Identities=17%  Similarity=0.033  Sum_probs=60.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS-   76 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~-   76 (433)
                      +++++||++.|+...        ...+++.++++++|++++|+|++||||||+.+.|++.+    |...+++.++.... 
T Consensus       341 ~i~~~~v~~~y~~~~--------~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~  412 (582)
T 3b5x_A          341 EVDVKDVTFTYQGKE--------KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKL  412 (582)
T ss_pred             eEEEEEEEEEcCCCC--------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCH
Confidence            467899999997421        13677888999999999999999999999999999976    77777776553211 


Q ss_pred             cccccccCCCCCCcCCh
Q psy16778         77 NIDKMSAKQPLNDEDRR   93 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~~   93 (433)
                      .......++.+|++...
T Consensus       413 ~~~~~~i~~v~Q~~~l~  429 (582)
T 3b5x_A          413 TNLRRHFALVSQNVHLF  429 (582)
T ss_pred             HHHhcCeEEEcCCCccc
Confidence            01122346777765443

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.24  E-value=2.4e-07  Score=89.05  Aligned_cols=40  Identities=23%  Similarity=0.315  Sum_probs=33.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CeEEeCCCCC
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLG-------VKFIDGDHLH   73 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg-------~~~id~D~~~   73 (433)
                      +..+|.+|+|+|++||||||+++.|++.+.       +.++..|...
T Consensus        86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~  132 (312)
T 3aez_A           86 DRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFL  132 (312)
T ss_dssp             SSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGB
T ss_pred             CCCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccC
Confidence            378899999999999999999999999762       4567766654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.22  E-value=3.2e-06  Score=85.34  Aligned_cols=91  Identities=13%  Similarity=0.065  Sum_probs=56.7

Q ss_pred             CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcc------ccc-cccccCCCCCCcCChhHHH
Q psy16778         29 LSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQ------SNI-DKMSAKQPLNDEDRRPWLN   97 (433)
Q Consensus        29 ~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~------~~~-~~~~~~~~~~~~~~~~~~~   97 (433)
                      .+++++..+|.+|+|+|++||||||+++.|+..+    |...+.+.+..+.      ..+ .....++.++.........
T Consensus       284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t  363 (503)
T 2yhs_A          284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV  363 (503)
T ss_dssp             CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred             CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence            4677888999999999999999999999999976    6666654443321      011 1233466666654444444


Q ss_pred             HHHHHHHHhhhCCCcEEEEcCc
Q psy16778         98 NINRIIHQLNVDNLTGVLVCSA  119 (433)
Q Consensus        98 ~~~~~~~~~~~~~~~~Vi~~~~  119 (433)
                      ..+++..........++|++.+
T Consensus       364 V~e~l~~a~~~~~DvVLIDTaG  385 (503)
T 2yhs_A          364 IFDAIQAAKARNIDVLIADTAG  385 (503)
T ss_dssp             HHHHHHHHHHTTCSEEEECCCC
T ss_pred             HHHHHHHHHhcCCCEEEEeCCC
Confidence            4444443333333334555555

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.16  E-value=2.9e-06  Score=81.51  Aligned_cols=39  Identities=28%  Similarity=0.296  Sum_probs=32.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CeEEeCCCCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG-------VKFIDGDHLH   73 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg-------~~~id~D~~~   73 (433)
                      ..++.+|+|+|++||||||+++.|+..++       +.+++.|.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~  134 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL  134 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence            34567999999999999999999999874       4568888765

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.15  E-value=2.6e-07  Score=86.56  Aligned_cols=81  Identities=16%  Similarity=0.094  Sum_probs=54.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNI   78 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~   78 (433)
                      ++++++|++.|+...      -....++++++++. |.+++|+|++||||||+.+.|++.+   |...+++.++... . 
T Consensus         1 ml~~~~l~~~y~~~~------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~-~-   71 (263)
T 2pjz_A            1 MIQLKNVGITLSGKG------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKI-R-   71 (263)
T ss_dssp             CEEEEEEEEEEEEET------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGC-S-
T ss_pred             CEEEEEEEEEeCCCC------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcch-H-
Confidence            478999999996410      00124667778899 9999999999999999999999864   4445554333211 1 


Q ss_pred             cccccC-CCCCCcC
Q psy16778         79 DKMSAK-QPLNDED   91 (433)
Q Consensus        79 ~~~~~~-~~~~~~~   91 (433)
                      .....+ +.+|+..
T Consensus        72 ~~~~i~~~v~Q~~~   85 (263)
T 2pjz_A           72 NYIRYSTNLPEAYE   85 (263)
T ss_dssp             CCTTEEECCGGGSC
T ss_pred             HhhheEEEeCCCCc
Confidence            112345 6666644

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.15  E-value=1.2e-07  Score=88.10  Aligned_cols=57  Identities=25%  Similarity=0.236  Sum_probs=44.5

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~   72 (433)
                      ++++++|++.              ..++++++++.+|.+++|+|++||||||+.+.|++.+   |...+++.++
T Consensus         4 ~l~~~~l~~~--------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~   63 (249)
T 2qi9_C            4 VMQLQDVAES--------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPL   63 (249)
T ss_dssp             EEEEEEEEET--------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEG
T ss_pred             EEEEEceEEE--------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEEC
Confidence            4778888765              1355666889999999999999999999999999865   5555555443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.08  E-value=3e-07  Score=79.32  Aligned_cols=49  Identities=12%  Similarity=0.130  Sum_probs=39.7

Q ss_pred             ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +..++++.||.          ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus         9 ~~~~~~~~~g~----------~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A            9 PDEFSMLRFGK----------KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CSHHHHHHHHH----------HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHH----------HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            34556677765          22455667889999999999999999999999999987

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.07  E-value=8.8e-07  Score=92.50  Aligned_cols=84  Identities=15%  Similarity=0.076  Sum_probs=58.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS-   76 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~-   76 (433)
                      +++++||++.|+...        ...++++++++++|++++|+|++||||||+.+.|++.+    |...+++.++.... 
T Consensus       341 ~i~~~~v~~~y~~~~--------~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~  412 (582)
T 3b60_A          341 DLEFRNVTFTYPGRE--------VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL  412 (582)
T ss_dssp             CEEEEEEEECSSSSS--------CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH
T ss_pred             cEEEEEEEEEcCCCC--------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCH
Confidence            467899999997421        12456677889999999999999999999999999976    66777776553211 


Q ss_pred             cccccccCCCCCCcCCh
Q psy16778         77 NIDKMSAKQPLNDEDRR   93 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~~   93 (433)
                      .......++.+|++...
T Consensus       413 ~~~~~~i~~v~Q~~~l~  429 (582)
T 3b60_A          413 ASLRNQVALVSQNVHLF  429 (582)
T ss_dssp             HHHHHTEEEECSSCCCC
T ss_pred             HHHHhhCeEEccCCcCC
Confidence            00112346667765443

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.04  E-value=5.8e-07  Score=93.79  Aligned_cols=82  Identities=15%  Similarity=0.039  Sum_probs=57.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      .++++||++.|+...        ...+++.++++++|+.++|+|++||||||+.+.|++.+    |...+++.++.....
T Consensus       339 ~i~~~~v~~~y~~~~--------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~  410 (578)
T 4a82_A          339 RIDIDHVSFQYNDNE--------APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT  410 (578)
T ss_dssp             CEEEEEEEECSCSSS--------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH
T ss_pred             eEEEEEEEEEcCCCC--------CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH
Confidence            367889999997522        12556677999999999999999999999999999876    667777766542110


Q ss_pred             -ccccccCCCCCCcC
Q psy16778         78 -IDKMSAKQPLNDED   91 (433)
Q Consensus        78 -~~~~~~~~~~~~~~   91 (433)
                       ......++.+|++.
T Consensus       411 ~~~r~~i~~v~Q~~~  425 (578)
T 4a82_A          411 GSLRNQIGLVQQDNI  425 (578)
T ss_dssp             HHHHHTEEEECSSCC
T ss_pred             HHHhhheEEEeCCCc
Confidence             01123456666543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.02  E-value=1.1e-05  Score=76.99  Aligned_cols=74  Identities=18%  Similarity=0.154  Sum_probs=48.3

Q ss_pred             CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc------ccc-ccccCCCCCCcC-ChhHHH
Q psy16778         30 SPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS------NID-KMSAKQPLNDED-RRPWLN   97 (433)
Q Consensus        30 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~------~~~-~~~~~~~~~~~~-~~~~~~   97 (433)
                      +++++..+|.+++|+|++||||||+++.|+..+    |...+.+.++.+..      .+. ....++.++... ..+...
T Consensus        92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~  171 (302)
T 3b9q_A           92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV  171 (302)
T ss_dssp             SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHH
T ss_pred             ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHH
Confidence            456778899999999999999999999999977    66677666554321      111 123455666554 444444


Q ss_pred             HHHHHH
Q psy16778         98 NINRII  103 (433)
Q Consensus        98 ~~~~~~  103 (433)
                      ..+++.
T Consensus       172 v~e~l~  177 (302)
T 3b9q_A          172 LSKAVK  177 (302)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.00  E-value=1.2e-06  Score=91.85  Aligned_cols=63  Identities=21%  Similarity=0.254  Sum_probs=51.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      .++++||++.|+..         ...+++.++++++|++++|+|++||||||+.+.|++.+    |...+++.++.
T Consensus       354 ~i~~~~v~~~y~~~---------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~  420 (598)
T 3qf4_B          354 EIEFKNVWFSYDKK---------KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIR  420 (598)
T ss_dssp             CEEEEEEECCSSSS---------SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGG
T ss_pred             eEEEEEEEEECCCC---------CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhh
Confidence            36788999999642         13677888999999999999999999999999999866    66677766553

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.99  E-value=2e-05  Score=74.97  Aligned_cols=93  Identities=18%  Similarity=0.259  Sum_probs=56.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC--Ccccccc------ccccCCC--------CCCc-CChhHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL--HPQSNID------KMSAKQP--------LNDE-DRRPWLNNI   99 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~--~~~~~~~------~~~~~~~--------~~~~-~~~~~~~~~   99 (433)
                      ++.+|+|+||+||||||++..|++.++..+|+.|.+  +....+.      .-..|.+        +.+. ....|.+..
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a   81 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA   81 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence            467899999999999999999999999999999976  2111000      0000111        1221 122344555


Q ss_pred             HHHHHHhhhCCCcEEEEcCcccHHHHHHHHhc
Q psy16778        100 NRIIHQLNVDNLTGVLVCSALRRNYRDIIRNN  131 (433)
Q Consensus       100 ~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~  131 (433)
                      ...+......|+..|+.+|  +..|.+.+...
T Consensus        82 ~~~i~~i~~~gk~pIlVGG--TglYi~aLl~g  111 (322)
T 3exa_A           82 TPLITEIHERGRLPFLVGG--TGLYVNAVIHQ  111 (322)
T ss_dssp             HHHHHHHHHTTCEEEEESC--CHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcEEEEcC--cHHHHHHHHcC
Confidence            5666677777766655443  34555555443

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.98  E-value=5.1e-06  Score=80.62  Aligned_cols=61  Identities=16%  Similarity=-0.002  Sum_probs=46.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++++++++.|+.          ...+.+++++..++.+++|+|+|||||||+.+.|+..+    |-..+.+.+.
T Consensus        29 ~ie~~~~~~~~~~----------~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~   93 (337)
T 2qm8_A           29 LAESRRADHRAAV----------RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP   93 (337)
T ss_dssp             HHTCSSHHHHHHH----------HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred             HHeeCCcccccCh----------HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence            3577788888864          23455666889999999999999999999999999865    5555555443

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.98  E-value=9.7e-07  Score=83.79  Aligned_cols=49  Identities=12%  Similarity=0.053  Sum_probs=32.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++|++.+            ...++++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus        40 ~l~~~~l~~~~------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           40 SLSFSNFSLLG------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             ----------C------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             eEEEEEEEEcC------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            35677777642            12456677889999999999999999999999999865

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.97  E-value=2.7e-05  Score=73.88  Aligned_cols=37  Identities=30%  Similarity=0.407  Sum_probs=33.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL   72 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~   72 (433)
                      .++.+|+|+||+||||||++..|++.++..+|+.|.+
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   44 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA   44 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence            3467899999999999999999999999999999975

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.95  E-value=2.2e-06  Score=89.46  Aligned_cols=64  Identities=19%  Similarity=0.108  Sum_probs=51.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      .++++||++.|+...        ...+++.++++++|++++|+|++||||||+.+.|++.+    |...+++.++.
T Consensus       341 ~i~~~~v~~~y~~~~--------~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~  408 (587)
T 3qf4_A          341 SVSFENVEFRYFENT--------DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR  408 (587)
T ss_dssp             CEEEEEEEECSSSSS--------CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGG
T ss_pred             cEEEEEEEEEcCCCC--------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcc
Confidence            467889999996422        12556677999999999999999999999999999876    66778777664

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.95  E-value=1.4e-06  Score=83.09  Aligned_cols=49  Identities=14%  Similarity=-0.029  Sum_probs=41.9

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++|++.|+           ...++++++++.+|.+++|+|++||||||+++.|++.+
T Consensus       102 i~~~~vs~~y~-----------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          102 FNYQNIELITF-----------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHTTCCHHHH-----------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEEEEEEcC-----------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            56778888885           12466677999999999999999999999999999987

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.95  E-value=2.1e-05  Score=76.69  Aligned_cols=90  Identities=16%  Similarity=0.092  Sum_probs=55.4

Q ss_pred             CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc------cc-cccccCCCCCCcC-ChhHHH
Q psy16778         30 SPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS------NI-DKMSAKQPLNDED-RRPWLN   97 (433)
Q Consensus        30 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~------~~-~~~~~~~~~~~~~-~~~~~~   97 (433)
                      +++++..+|.+|+|+|++||||||+++.|+..+    |...+.+.++.+..      .+ .....++.++... ..+...
T Consensus       149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t  228 (359)
T 2og2_A          149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV  228 (359)
T ss_dssp             SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred             CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence            456778899999999999999999999999977    66677666554321      11 1123455666554 445444


Q ss_pred             HHHHHHHHhhhCCCcEEEEcCc
Q psy16778         98 NINRIIHQLNVDNLTGVLVCSA  119 (433)
Q Consensus        98 ~~~~~~~~~~~~~~~~Vi~~~~  119 (433)
                      ..+++...........+++..+
T Consensus       229 v~e~l~~~~~~~~d~~lldt~G  250 (359)
T 2og2_A          229 LSKAVKRGKEEGYDVVLCDTSG  250 (359)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCC
T ss_pred             HHHHHHHHHhCCCHHHHHHhcC
Confidence            4444433322222234555544

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.89  E-value=3.2e-05  Score=73.86  Aligned_cols=84  Identities=12%  Similarity=0.051  Sum_probs=51.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc------c-cccccCCCCCCcCChhHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN------I-DKMSAKQPLNDEDRRPWLNNINRIIH  104 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (433)
                      .+|.+|+|+|++||||||+++.|+..+    |...+.+-++.....      + .....++.++.....+.....+++..
T Consensus       100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~  179 (304)
T 1rj9_A          100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA  179 (304)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence            368899999999999999999999877    666666655543211      1 11234566676655555544444433


Q ss_pred             HhhhCCCcEEEEcCc
Q psy16778        105 QLNVDNLTGVLVCSA  119 (433)
Q Consensus       105 ~~~~~~~~~Vi~~~~  119 (433)
                      ........++++..+
T Consensus       180 ~~~~~~d~~llDt~G  194 (304)
T 1rj9_A          180 MKARGYDLLFVDTAG  194 (304)
T ss_dssp             HHHHTCSEEEECCCC
T ss_pred             HHhCCCCEEEecCCC
Confidence            322222234555544

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.88  E-value=9e-06  Score=73.02  Aligned_cols=37  Identities=27%  Similarity=0.282  Sum_probs=28.5

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG   69 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~   69 (433)
                      +++.+|.+++|+|+|||||||+.+.|++.+....++.
T Consensus        15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~   51 (207)
T 1znw_A           15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSV   51 (207)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECC
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcc
Confidence            6789999999999999999999999999875444443

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.82  E-value=4.4e-05  Score=73.60  Aligned_cols=85  Identities=18%  Similarity=0.116  Sum_probs=50.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccccc-----ccccC--CCCCCcCChhHHHHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNID-----KMSAK--QPLNDEDRRPWLNNINRII  103 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~  103 (433)
                      ..+|.+|+|+|++||||||+.+.|+..+    |-..+.+.++.......     ....+  +.++.....+.....+++.
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~  205 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ  205 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence            4678999999999999999999999977    55555555543321110     11223  3444444445555555544


Q ss_pred             HHhhhCCCcEEEEcCc
Q psy16778        104 HQLNVDNLTGVLVCSA  119 (433)
Q Consensus       104 ~~~~~~~~~~Vi~~~~  119 (433)
                      .........++++..+
T Consensus       206 ~~~~~~~d~vliDtaG  221 (328)
T 3e70_C          206 HAKARGIDVVLIDTAG  221 (328)
T ss_dssp             HHHHHTCSEEEEEECC
T ss_pred             HHHhccchhhHHhhcc
Confidence            4433333345566554

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.82  E-value=8.3e-06  Score=85.20  Aligned_cols=47  Identities=23%  Similarity=0.191  Sum_probs=39.7

Q ss_pred             ccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          6 FGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++|++.||...         ..+.+++ ++.+|.+++|+|++||||||+.++|++.+
T Consensus        95 ~~ls~~yg~~~---------~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A           95 EDCVHRYGVNA---------FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             GSEEEECSTTC---------CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCeEEEECCCC---------eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            88899997521         2466777 78999999999999999999999999865

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.81  E-value=2.1e-06  Score=97.64  Aligned_cols=65  Identities=26%  Similarity=0.261  Sum_probs=53.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      .++++||++.|...+       +...++++++++++|+.|+|+|++||||||+.+.|.+.+    |...+|+-++.
T Consensus      1076 ~I~f~nVsf~Y~~~~-------~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~ 1144 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERP-------EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIK 1144 (1321)
T ss_dssp             CEEEEEEEECCTTSC-------SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETT
T ss_pred             eEEEEEEEEeCCCCC-------CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhh
Confidence            367899999996422       122566777999999999999999999999999999876    77888887764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.78  E-value=1.2e-05  Score=82.91  Aligned_cols=47  Identities=26%  Similarity=0.203  Sum_probs=39.6

Q ss_pred             ccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          6 FGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++|++.||...         ..+.+++ ++.+|.+++|+|++||||||+.++|++.+
T Consensus        25 ~~ls~~yg~~~---------~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           25 EDCVHRYGVNA---------FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CCEEEECSTTC---------CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCcEEEECCcc---------ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            58999997521         2466777 89999999999999999999999999865

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.76  E-value=3e-06  Score=96.10  Aligned_cols=65  Identities=17%  Similarity=0.137  Sum_probs=51.6

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      .++++||++.|+...       +...++++++++++|+.++|+|++||||||+.+.|.+.+    |...+++.++.
T Consensus       387 ~i~~~~v~~~y~~~~-------~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~  455 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRK-------EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR  455 (1284)
T ss_dssp             CEEEEEEEECCSSTT-------SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGG
T ss_pred             eEEEEEEEEEcCCCC-------CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHH
Confidence            367889999997422       012566677999999999999999999999999999876    66778776653

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.75  E-value=8.7e-05  Score=82.44  Aligned_cols=161  Identities=14%  Similarity=0.109  Sum_probs=102.6

Q ss_pred             cCCCCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEE--ecCC---------------------
Q psy16778        234 RDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYIL--STIS---------------------  290 (433)
Q Consensus       234 ~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~--s~~s---------------------  290 (433)
                      ..+..+|++++++|.+++.||++||.++.      +....++++...|..+++  |...                     
T Consensus       526 ~ev~~v~ls~~~~G~~~~nPv~lAa~~~~------~~~~~~~~~~~~g~G~vv~~t~~~~~~~~gn~~pr~~~~~~~g~~  599 (1025)
T 1gte_A          526 TPVDLVDISVEMAGLKFINPFGLASAAPT------TSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPM  599 (1025)
T ss_dssp             CGGGGCCCCEEETTEEESSSEEECSSGGG------SSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSC
T ss_pred             cccccccceeeeccccccCcccccCCCCC------CCHHHHHHHHHCCcCeEEeceecccccccCCCCccEEeccccccc
Confidence            34567899999999999999999997663      334556777777877765  1110                     


Q ss_pred             ---------------CCC-------HHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCcccc
Q psy16778        291 ---------------TTS-------IEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYA  348 (433)
Q Consensus       291 ---------------~~~-------~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~  348 (433)
                                     +..       ++++.+..++.+.|++++...+.+...+.+++++++|+.+|.++++.|.. .+.+
T Consensus       600 ~~~~~~~~~n~e~~~~~~~~~~~~~i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~-~~~~  678 (1025)
T 1gte_A          600 YGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG-MGER  678 (1025)
T ss_dssp             CSSCCSCEEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC-CC--
T ss_pred             cCCchhheeeeccccchhHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCC
Confidence                           011       24444445667889999988888888889999999999999999987764 2222


Q ss_pred             ccccccCCCccchHHHHHh----hCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778        349 DIRNKFNMPSHLNIEELAE----KTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       349 ~~~~~~~~~~~~s~e~i~~----~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT  405 (433)
                      ..-..+. .....+.++.+    .+. -+.+..+  ..+-.-..+++++++++|+++|.+|
T Consensus       679 ~~G~~~~-~~~~~~~~iv~~v~~~~~-~Pv~vK~--~~~~~~~~~~a~~~~~~G~d~i~v~  735 (1025)
T 1gte_A          679 GMGLACG-QDPELVRNICRWVRQAVQ-IPFFAKL--TPNVTDIVSIARAAKEGGADGVTAT  735 (1025)
T ss_dssp             ---SBGG-GCHHHHHHHHHHHHHHCS-SCEEEEE--CSCSSCHHHHHHHHHHHTCSEEEEC
T ss_pred             Ccccccc-cCHHHHHHHHHHHHHhhC-CceEEEe--CCChHHHHHHHHHHHHcCCCEEEEe
Confidence            1111110 01112233322    221 1222222  2233336778999999999999994

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.73  E-value=0.0001  Score=70.81  Aligned_cols=44  Identities=23%  Similarity=0.342  Sum_probs=35.5

Q ss_pred             CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCC
Q psy16778         29 LSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHL   72 (433)
Q Consensus        29 ~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~   72 (433)
                      .+++++..++.+|+|+|++|+||||++..|+..+     .+.+++.|..
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~  144 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF  144 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            3566777889999999999999999999999877     2345666654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.70  E-value=4.2e-06  Score=84.51  Aligned_cols=40  Identities=23%  Similarity=0.285  Sum_probs=34.7

Q ss_pred             CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----C-C-eEEeCC
Q psy16778         31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----G-V-KFIDGD   70 (433)
Q Consensus        31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g-~-~~id~D   70 (433)
                      .++++.+|++++|+|++||||||++|+|++.+    | . .+++++
T Consensus       131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~  176 (460)
T 2npi_A          131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD  176 (460)
T ss_dssp             HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC
T ss_pred             CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC
Confidence            44667899999999999999999999999966    7 6 778774

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.68  E-value=0.00014  Score=71.60  Aligned_cols=35  Identities=34%  Similarity=0.583  Sum_probs=32.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL   72 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~   72 (433)
                      +.+|+|+||+||||||++..|++.++..+|+.|.+
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~   36 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSM   36 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCcc
Confidence            35899999999999999999999999999999874

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.67  E-value=5.2e-06  Score=94.40  Aligned_cols=65  Identities=22%  Similarity=0.168  Sum_probs=51.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      .++++||+|.|....       +...+++.++++++|+.++|+|++||||||+.+.|.+.+    |...+|+-++.
T Consensus       415 ~I~~~nvsF~Y~~~~-------~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~  483 (1321)
T 4f4c_A          415 DITVENVHFTYPSRP-------DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVR  483 (1321)
T ss_dssp             CEEEEEEEECCSSST-------TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred             cEEEEEeeeeCCCCC-------CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccch
Confidence            367889999996421       122566777999999999999999999999999999877    66777776553

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.61  E-value=1.6e-05  Score=90.22  Aligned_cols=64  Identities=27%  Similarity=0.322  Sum_probs=51.5

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      ++++||++.|+...       +...++++++++.+|++++|+|++||||||+++.|.+.+    |...+++.++.
T Consensus      1031 i~~~~v~~~y~~~~-------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~ 1098 (1284)
T 3g5u_A         1031 VQFSGVVFNYPTRP-------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIK 1098 (1284)
T ss_dssp             EEEEEEEBCCSCGG-------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTT
T ss_pred             EEEEEEEEECCCCC-------CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcc
Confidence            67888999996411       123688999999999999999999999999999999866    55667766653

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.61  E-value=5.6e-06  Score=90.18  Aligned_cols=53  Identities=21%  Similarity=0.100  Sum_probs=43.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++|+++.|+...        ...+.++++++..|.+++|+|++||||||+.+.|++.+
T Consensus       671 mL~v~nLs~~Y~g~~--------~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          671 IVKVTNMEFQYPGTS--------KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EEEEEEEEECCTTCS--------SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred             eEEEEeeEEEeCCCC--------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            477889999996421        12455677889999999999999999999999999865

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.60  E-value=1.5e-05  Score=86.80  Aligned_cols=48  Identities=21%  Similarity=0.169  Sum_probs=40.4

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      +...++++.||.          ...++++++++.+|.+++|+|++||||||+.+.|++
T Consensus       436 L~~~~ls~~yg~----------~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          436 LCNCEFSLAYGA----------KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEeeEEEEECC----------EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            345578899976          235667778999999999999999999999999995

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.60  E-value=2.3e-05  Score=69.95  Aligned_cols=47  Identities=13%  Similarity=0.064  Sum_probs=31.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +++++++++.|+.           ..+.+  +...++..|+|+|++||||||+.+.|.+.
T Consensus         3 ~l~~~~~~~~~~~-----------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A            3 NLNYQQTHFVMSA-----------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             --------CEEEE-----------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             chhhhhhhheeec-----------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999963           12333  66889999999999999999999988753

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.60  E-value=2.2e-05  Score=78.82  Aligned_cols=51  Identities=12%  Similarity=-0.059  Sum_probs=43.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++++++++.|++         +...++++ +++.+|.+++|+|++||||||+.+.|++..
T Consensus       131 ~l~~~~v~~~~~t---------g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          131 PLQRTPIEHVLDT---------GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             TTTSCCCCSBCCC---------SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ceEEeccceecCC---------CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            4677888888863         13467778 999999999999999999999999999976

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.54  E-value=2.4e-05  Score=76.14  Aligned_cols=51  Identities=14%  Similarity=-0.075  Sum_probs=43.4

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++++++++.|+.         +...++.+ +++.+|.+++|+|++||||||+.+.|++.+
T Consensus        45 ~i~~~~l~~~~~t---------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           45 PLLRQVIDQPFIL---------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             STTCCCCCSEECC---------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CeeecccceecCC---------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4677888888863         14567777 899999999999999999999999999976

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.53  E-value=2.1e-05  Score=81.02  Aligned_cols=60  Identities=13%  Similarity=0.046  Sum_probs=44.7

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCC-CCCCCeEEEEEcCCCCCHHHHHHH--HHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSG-EGSPSTVFVIMGVSGSGKSTIGES--LATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~I~l~G~~GsGKSTla~~--La~~l----g~~~id~D~~   72 (433)
                      ++.+++.+..+.          ...+++.++ .+.+|.+++|+|+|||||||+++.  ++..+    |..++++.+.
T Consensus        13 ~~~~~~~~~~~g----------~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~   79 (525)
T 1tf7_A           13 SEHQAIAKMRTM----------IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET   79 (525)
T ss_dssp             -CCSSCCEECCC----------CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred             ccccccccccCC----------chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence            344455555544          446777888 899999999999999999999999  45544    6677877653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.53  E-value=2.8e-05  Score=80.23  Aligned_cols=49  Identities=27%  Similarity=0.201  Sum_probs=38.8

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++++.|+.           ..+...++++.+|.+++|+|++||||||+++.|++.+
T Consensus       288 l~~~~l~~~~~~-----------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          288 VTYPRLVKDYGS-----------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEECCEEEEETT-----------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEeeEEEEECC-----------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            567777777754           1234456678899999999999999999999999854

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.52  E-value=2.6e-05  Score=81.41  Aligned_cols=50  Identities=26%  Similarity=0.219  Sum_probs=39.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++++++++.|+..           .+...++++.+|.+++|+|++||||||+.+.|++.+
T Consensus       357 ~l~~~~l~~~~~~~-----------~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          357 LVEYPRLVKDYGSF-----------KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEECCEEEECSSC-----------EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEeceEEEecce-----------EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            35677777777641           233455678899999999999999999999999854

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.49  E-value=2.7e-05  Score=80.18  Aligned_cols=49  Identities=20%  Similarity=0.313  Sum_probs=38.6

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++++.|+..           .+...++++.+|++++|+|++||||||+++.|++.+
T Consensus       270 l~~~~l~~~~~~~-----------~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          270 MKWTKIIKKLGDF-----------QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEECCEEEEETTE-----------EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEcceEEEECCE-----------EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            5667777777651           122335678999999999999999999999999865

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.46  E-value=6.6e-05  Score=65.77  Aligned_cols=27  Identities=33%  Similarity=0.613  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCe
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVK   65 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~   65 (433)
                      ++++|+|++||||||+++.|++.+++.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            578999999999999999999998744

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.46  E-value=4.6e-05  Score=71.61  Aligned_cols=38  Identities=21%  Similarity=0.381  Sum_probs=31.4

Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q psy16778         28 TLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFI   67 (433)
Q Consensus        28 ~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~i   67 (433)
                      +.+++++..+|  ++|+|+|||||||+++.|++.++..++
T Consensus        36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i   73 (274)
T 2x8a_A           36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFI   73 (274)
T ss_dssp             HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred             HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence            44556677777  999999999999999999999876554

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.46  E-value=2e-05  Score=73.02  Aligned_cols=38  Identities=21%  Similarity=0.341  Sum_probs=30.6

Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q psy16778         28 TLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFI   67 (433)
Q Consensus        28 ~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~i   67 (433)
                      +.+.+++..+|  ++|+|++||||||+++.+++.++..++
T Consensus        41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~~~~i   78 (254)
T 1ixz_A           41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFI   78 (254)
T ss_dssp             HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            44455666666  999999999999999999998865554

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=97.44  E-value=0.0003  Score=67.70  Aligned_cols=29  Identities=31%  Similarity=0.344  Sum_probs=26.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGV   64 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~   64 (433)
                      .+++.|+|-|+-||||||+++.|++.++.
T Consensus         5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            5 VTIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            45689999999999999999999998854

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.40  E-value=2.7e-05  Score=73.25  Aligned_cols=38  Identities=21%  Similarity=0.341  Sum_probs=30.4

Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q psy16778         28 TLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFI   67 (433)
Q Consensus        28 ~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~i   67 (433)
                      +.+.+++..+|  ++|+|++||||||+++.++..++..++
T Consensus        65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~~~~i  102 (278)
T 1iy2_A           65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFI  102 (278)
T ss_dssp             HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcCCCEE
Confidence            34455666666  999999999999999999998865554

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.40  E-value=0.00035  Score=66.57  Aligned_cols=41  Identities=32%  Similarity=0.516  Sum_probs=32.1

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCC
Q psy16778         32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHL   72 (433)
Q Consensus        32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~   72 (433)
                      ++...++.+|+|+|++||||||+++.|+..+   |  +.+++.|..
T Consensus        98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~  143 (306)
T 1vma_A           98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF  143 (306)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence            3445778999999999999999999999877   2  345565543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.39  E-value=3e-05  Score=77.05  Aligned_cols=47  Identities=21%  Similarity=0.207  Sum_probs=35.2

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeE--EEEEcCCCCCHHHHHHHHHHH
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTV--FVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--I~l~G~~GsGKSTla~~La~~   61 (433)
                      +++.+ ++.|+.          .. +.++++++.+|.+  ++|+|++||||||+.+.|++.
T Consensus        17 l~~~~-~~~y~~----------~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           17 VPLAG-HVGFDS----------LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             CCCCC-CC-CC------------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEee-EEEECC----------ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            45555 677764          22 5566788999999  999999999999999999875

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.37  E-value=6.8e-05  Score=72.54  Aligned_cols=28  Identities=39%  Similarity=0.678  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKF   66 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~   66 (433)
                      ..|+|+|++||||||+++.|++.+++.+
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            4699999999999999999999999888

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.36  E-value=0.00014  Score=68.90  Aligned_cols=40  Identities=20%  Similarity=0.085  Sum_probs=33.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CeEE-eCCCCCc
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG-------VKFI-DGDHLHP   74 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg-------~~~i-d~D~~~~   74 (433)
                      .+++.+|+|+|++||||||+++.|++.++       ...+ ..|.++.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~   75 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL   75 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence            46788999999999999999999999874       4455 8888764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.35  E-value=0.00014  Score=61.62  Aligned_cols=37  Identities=22%  Similarity=0.443  Sum_probs=31.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHLH   73 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~~   73 (433)
                      ++..++|+|++||||||+++.++..+   |  ..+++..++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~   76 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP   76 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence            78899999999999999999999987   6  5677766654

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=97.34  E-value=0.00073  Score=65.81  Aligned_cols=152  Identities=14%  Similarity=0.185  Sum_probs=92.2

Q ss_pred             hhhcceeecccccCCC--CCCceeeeC-CCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHH
Q psy16778        222 ALKVLRIRPRVMRDLS--KRTLVTDAL-GHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELA  298 (433)
Q Consensus       222 a~~~~~l~pr~l~~~~--~~d~~~~~~-g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva  298 (433)
                      .|+++.|+|. +.++.  ++|++|.+. +..+..||+.+|+..  .    .+..+|.+.+++|-.-++..  +.+.|+..
T Consensus        14 ~fddv~l~p~-~~~~~~~~vdl~t~l~~~~~l~~Pii~apM~~--v----t~~~lA~avA~~GGlgii~~--~~s~e~~~   84 (361)
T 3khj_A           14 TFEDILLVPN-YSEVLPREVSLETKLTKNVSLKIPLISSAMDT--V----TEHLMAVGMARLGGIGIIHK--NMDMESQV   84 (361)
T ss_dssp             CGGGEEECCC-CBCCCGGGCCCCEESSSSCEESSSEEECSSTT--T----CSHHHHHHHHHTTCEEEECS--SSCHHHHH
T ss_pred             CcceEEEECC-CCCCCHHHccCceecccccccCCCEEeecCCC--C----CcHHHHHHHHHcCCCeEEec--CCCHHHHH
Confidence            5788999998 56654  588999998 789999999999874  2    23466776666666555543  45566654


Q ss_pred             Hh------CCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCc
Q psy16778        299 EK------TPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQT  372 (433)
Q Consensus       299 ~~------~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~  372 (433)
                      +.      ....+.-..+....     .+.++.+.++|+..|++++  +. |...     .    ....++++.+..+  
T Consensus        85 ~~I~~vk~~~~~pvga~ig~~~-----~e~a~~l~eaGad~I~ld~--a~-G~~~-----~----~~~~i~~i~~~~~--  145 (361)
T 3khj_A           85 NEVLKVKNSGGLRVGAAIGVNE-----IERAKLLVEAGVDVIVLDS--AH-GHSL-----N----IIRTLKEIKSKMN--  145 (361)
T ss_dssp             HHHHHHHHTTCCCCEEEECTTC-----HHHHHHHHHTTCSEEEECC--SC-CSBH-----H----HHHHHHHHHHHCC--
T ss_pred             HHHHHHHhccCceEEEEeCCCH-----HHHHHHHHHcCcCeEEEeC--CC-CCcH-----H----HHHHHHHHHHhcC--
Confidence            31      12222333443322     3567777889999888654  11 1110     0    0011233333221  


Q ss_pred             chhhhhhccCCHHHHHHHHHHHHHcCCcEEEEec
Q psy16778        373 TKWFQLYIYRDREITKSLVQRAEKAGYKALVLTV  406 (433)
Q Consensus       373 ~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTv  406 (433)
                           +.+......+.+.++++.++|+++|++++
T Consensus       146 -----~~Vivg~v~t~e~A~~l~~aGaD~I~VG~  174 (361)
T 3khj_A          146 -----IDVIVGNVVTEEATKELIENGADGIKVGI  174 (361)
T ss_dssp             -----CEEEEEEECSHHHHHHHHHTTCSEEEECS
T ss_pred             -----CcEEEccCCCHHHHHHHHHcCcCEEEEec
Confidence                 22222233577889999999999999964

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.33  E-value=9.1e-05  Score=64.62  Aligned_cols=30  Identities=13%  Similarity=0.230  Sum_probs=26.3

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +...++..++|+|++||||||+++.++..+
T Consensus        33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             CCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            344568999999999999999999999876

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.30  E-value=0.00012  Score=76.43  Aligned_cols=29  Identities=34%  Similarity=0.461  Sum_probs=26.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ...+|.+++|+|++||||||+.++|++.+
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999999999999865

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.28  E-value=0.00015  Score=74.63  Aligned_cols=45  Identities=18%  Similarity=0.162  Sum_probs=34.6

Q ss_pred             cceeeeccCCccceeeeeecccCCCCC-CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          7 GNWRYWGMWPPQYVVTLIMTTTLSPSG-EGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +..+.||.+.+.           -+.+ ...+|.+++|+|++||||||+.++|++.+
T Consensus         4 ~~~~~~~~~~f~-----------l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A            4 EVIHRYKVNGFK-----------LFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             CEEEESSTTSCE-----------EECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCceecCCCcee-----------ecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            567788875531           1113 35788999999999999999999999865

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.25  E-value=8.6e-05  Score=73.95  Aligned_cols=37  Identities=27%  Similarity=0.318  Sum_probs=30.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      .++.+|+|+|++||||||+.+.|.+.+    |...+..|.+
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i  205 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI  205 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence            567899999999999999999999977    4455655554

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.23  E-value=0.00022  Score=63.14  Aligned_cols=37  Identities=30%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH   73 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~   73 (433)
                      -.+..|+|+|++||||||++..|+++.+ .+++.|.+.
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~   68 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVD   68 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEE
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhh
Confidence            3578899999999999999999999755 888888764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.22  E-value=9.9e-05  Score=72.47  Aligned_cols=41  Identities=20%  Similarity=0.173  Sum_probs=35.0

Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778         28 TLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFID   68 (433)
Q Consensus        28 ~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id   68 (433)
                      +.++++.+.++..|+|+|++||||||+++.|++.++..++.
T Consensus       159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            33455778999999999999999999999999988776665

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.21  E-value=0.00031  Score=68.67  Aligned_cols=40  Identities=25%  Similarity=0.306  Sum_probs=33.0

Q ss_pred             CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEe
Q psy16778         29 LSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFID   68 (433)
Q Consensus        29 ~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id   68 (433)
                      ..+++.+.+|.+++|+|++||||||+.+.|++.+    |...++
T Consensus       166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie  209 (361)
T 2gza_A          166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE  209 (361)
T ss_dssp             HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred             HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence            3455667899999999999999999999999876    555555

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.21  E-value=0.00014  Score=73.46  Aligned_cols=45  Identities=20%  Similarity=0.137  Sum_probs=37.2

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778         27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus        27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      .+.++++++.+ .+++|+|++||||||+.+.|+..+    |...+++.++
T Consensus        19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~   67 (483)
T 3euj_A           19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE   67 (483)
T ss_dssp             TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred             cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence            45566688999 999999999999999999999976    5666666554

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.19  E-value=3.2e-05  Score=74.85  Aligned_cols=28  Identities=25%  Similarity=0.469  Sum_probs=25.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKF   66 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~   66 (433)
                      ..++|+|++|+||||+++.+++.++..+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            6899999999999999999999998754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.16  E-value=0.00024  Score=66.22  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=30.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHL   72 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~   72 (433)
                      ..+|.+++|+|++||||||+.+.|++.+     |...++.+.+
T Consensus        22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i   64 (261)
T 2eyu_A           22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI   64 (261)
T ss_dssp             GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred             hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence            6889999999999999999999999865     3445555443

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.15  E-value=0.0002  Score=70.06  Aligned_cols=37  Identities=27%  Similarity=0.334  Sum_probs=32.4

Q ss_pred             CCCCCCCC--CeEEEEEcCCCCCHHHHHHHHHHHhCCeE
Q psy16778         30 SPSGEGSP--STVFVIMGVSGSGKSTIGESLATRLGVKF   66 (433)
Q Consensus        30 ~~~~~~~~--~~~I~l~G~~GsGKSTla~~La~~lg~~~   66 (433)
                      .+++++.+  +..++|+|++||||||+++.|++.+....
T Consensus       160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~  198 (365)
T 1lw7_A          160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS  198 (365)
T ss_dssp             GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            47778888  99999999999999999999999876543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.15  E-value=0.00018  Score=64.58  Aligned_cols=26  Identities=27%  Similarity=0.436  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .+|.+++|+|++||||||+.+.|+..
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            67899999999999999999999985

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.15  E-value=0.00012  Score=69.24  Aligned_cols=39  Identities=23%  Similarity=0.119  Sum_probs=34.0

Q ss_pred             eecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         24 IMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        24 ~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +...+++.++.+.+|.+++|+|+|||||||+++.++..+
T Consensus        21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            345667777889999999999999999999999999865

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.15  E-value=0.00021  Score=63.17  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=23.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      |.+++|+|++||||||+.+.|+..+
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc
Confidence            4689999999999999999999987

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.12  E-value=0.00022  Score=64.37  Aligned_cols=37  Identities=11%  Similarity=0.060  Sum_probs=29.9

Q ss_pred             cccCCCCC-CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         26 TTTLSPSG-EGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        26 ~~~~~~~~-~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+++... .+.+|.+++|+|++||||||+++.++..+
T Consensus        10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34445443 57789999999999999999999999754

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.12  E-value=0.00038  Score=64.33  Aligned_cols=32  Identities=22%  Similarity=0.424  Sum_probs=27.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDG   69 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~   69 (433)
                      +..++|+|++|+||||+++.+++.++.+++..
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i   76 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence            44599999999999999999999998766543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.12  E-value=0.00023  Score=62.59  Aligned_cols=45  Identities=20%  Similarity=0.117  Sum_probs=25.1

Q ss_pred             cceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         18 QYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      -++.+++|...............|+|+|++||||||+.+.+....
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A            9 HHGIPLPGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             ---------------CCCSEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             cCCCCCCCcccCCcccccCcceEEEEECcCCCCHHHHHHHHhcCC
Confidence            345667766666555555555789999999999999999999853

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.09  E-value=0.00024  Score=64.19  Aligned_cols=30  Identities=27%  Similarity=0.443  Sum_probs=26.7

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .-+.+|.+++|+|+|||||||+++.|+..+
T Consensus        20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           20 GGIETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            357789999999999999999999999843

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.09  E-value=0.00034  Score=60.96  Aligned_cols=31  Identities=39%  Similarity=0.492  Sum_probs=26.3

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      ++++..+ +.+|+|++||||||+.+.|.-.++
T Consensus        21 ~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           21 VIPFSKG-FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             EEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence            3556666 899999999999999999998775

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.07  E-value=0.00034  Score=66.28  Aligned_cols=35  Identities=26%  Similarity=0.233  Sum_probs=29.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG   69 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~   69 (433)
                      .+.+..++|.|+||+|||++++.+++.+|..++..
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v   67 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMM   67 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            45567899999999999999999999998876543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.05  E-value=0.00049  Score=65.36  Aligned_cols=35  Identities=26%  Similarity=0.442  Sum_probs=30.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG   69 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~   69 (433)
                      ...+..|+|+|++|+||||+++.+++.++..++..
T Consensus        46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v   80 (301)
T 3cf0_A           46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI   80 (301)
T ss_dssp             CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEE
Confidence            45677899999999999999999999998877654

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=97.03  E-value=0.0056  Score=59.00  Aligned_cols=43  Identities=21%  Similarity=0.320  Sum_probs=34.6

Q ss_pred             CCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEe
Q psy16778        238 KRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILS  287 (433)
Q Consensus       238 ~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s  287 (433)
                      .+|++++++|.+++.||++|+ |    ++++++  ..+++++.|+.++.+
T Consensus        42 ~~~l~~~i~g~~l~npi~~aa-g----~~~~~~--~~~~~a~~G~g~i~~   84 (336)
T 1f76_A           42 VPAKPVNCMGLTFKNPLGLAA-G----LDKDGE--CIDALGAMGFGSIEI   84 (336)
T ss_dssp             CCCCCEEETTEEESSSEEECT-T----SSTTCC--CHHHHHHTTCSEEEE
T ss_pred             CCCCCeEECCEEcCCCcEeCc-c----cCCcHH--HHHHHHHcCccEEEe
Confidence            489999999999999999994 3    366676  577788889887543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.91  E-value=0.0007  Score=62.41  Aligned_cols=33  Identities=24%  Similarity=0.459  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFID   68 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id   68 (433)
                      ..+..++|+|++|+||||+++.+++.++.+++.
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~   69 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLA   69 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            455679999999999999999999999877654

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.89  E-value=0.0008  Score=58.10  Aligned_cols=37  Identities=24%  Similarity=0.350  Sum_probs=32.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH   73 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~   73 (433)
                      -.+.-|+|+|+||+||||++..|.++ |+.++.-|.+.
T Consensus        14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v~   50 (181)
T 3tqf_A           14 IDKMGVLITGEANIGKSELSLALIDR-GHQLVCDDVID   50 (181)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEEE
Confidence            35678999999999999999999985 99999888764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.87  E-value=0.00091  Score=62.61  Aligned_cols=34  Identities=26%  Similarity=0.521  Sum_probs=29.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG   69 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~   69 (433)
                      ..+..++|.|++|+||||+++.+++.++..++..
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v   82 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRV   82 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            4567799999999999999999999998887653

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.00077  Score=67.10  Aligned_cols=35  Identities=23%  Similarity=0.446  Sum_probs=30.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      ..+.-|+|.||||+|||++++.+|..+|.+++..+
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~  238 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN  238 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence            45567999999999999999999999999987543

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.00078  Score=67.14  Aligned_cols=35  Identities=17%  Similarity=0.336  Sum_probs=30.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      ..+.-|+|.||||||||++++.+|..+|.+++..+
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~  247 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA  247 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            45678999999999999999999999999886543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.87  E-value=0.00087  Score=63.20  Aligned_cols=32  Identities=25%  Similarity=0.619  Sum_probs=28.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFID   68 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id   68 (433)
                      .+..++|.|++|+||||+++.+++.++..++.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~   84 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN   84 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            45789999999999999999999999887654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.86  E-value=0.0058  Score=60.91  Aligned_cols=37  Identities=30%  Similarity=0.490  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH   73 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~   73 (433)
                      ++.+|+++|++||||||++..|+..+     .+.+++.|...
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R  140 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR  140 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            57899999999999999999999866     34568888764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.85  E-value=0.00059  Score=63.82  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      -.++|+|++||||||+.+.|++.+    |...+++.+
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~   39 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEK   39 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcc
Confidence            368999999999999999999976    444444433

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.84  E-value=0.00059  Score=68.17  Aligned_cols=34  Identities=26%  Similarity=0.462  Sum_probs=30.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDH   71 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~   71 (433)
                      +..|+|+|+||+||||+++.||+.++.+++..+.
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~   83 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence            4579999999999999999999999999887664

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.00084  Score=66.96  Aligned_cols=34  Identities=26%  Similarity=0.590  Sum_probs=30.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG   69 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~   69 (433)
                      ..+.-|+|.||||||||++++.+|..+|.+++..
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v  246 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS  246 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            4567899999999999999999999999988653

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.83  E-value=0.0008  Score=68.42  Aligned_cols=40  Identities=20%  Similarity=0.322  Sum_probs=31.1

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778         27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFID   68 (433)
Q Consensus        27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id   68 (433)
                      .+.+.++...+|  ++|+|+||+||||+++.++..++.+++.
T Consensus        55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~~~~i~   94 (499)
T 2dhr_A           55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEARVPFIT   94 (499)
T ss_dssp             GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred             hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            344555555555  9999999999999999999988766543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.81  E-value=0.0007  Score=66.05  Aligned_cols=34  Identities=35%  Similarity=0.578  Sum_probs=30.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      .+..|+|+|+||+|||++++.+++.++.+++..+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~   83 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD   83 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence            4568999999999999999999999998887654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.80  E-value=0.00025  Score=73.17  Aligned_cols=37  Identities=27%  Similarity=0.523  Sum_probs=30.7

Q ss_pred             CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778         31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFID   68 (433)
Q Consensus        31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id   68 (433)
                      .+++. ++.+++|+|+||+||||+++.+++.++..++.
T Consensus       102 ~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~  138 (543)
T 3m6a_A          102 LTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR  138 (543)
T ss_dssp             HSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             hcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence            33444 68899999999999999999999999776543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.79  E-value=0.00037  Score=60.53  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++|+|++||||||+++.|.+.+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            589999999999999999999976

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.78  E-value=0.00098  Score=65.59  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=29.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG   69 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~   69 (433)
                      ..+.-|+|.||||+|||++++.+|..+|.+++..
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v  213 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV  213 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence            4456799999999999999999999999998654

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=96.78  E-value=0.0032  Score=59.38  Aligned_cols=104  Identities=12%  Similarity=0.142  Sum_probs=62.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCc
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLT  112 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (433)
                      +.+.+|+|-|.-||||||..+.|.+.+   |+.++....-...    ..  .        ..++   ......+-..|..
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~e----E~--~--------~~yl---~R~~~~LP~~G~I  146 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTET----ER--G--------QWYF---QRYVATFPTAGEF  146 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHH----HH--T--------SCTT---HHHHTTCCCTTCE
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChH----HH--h--------chHH---HHHHHhcccCCeE
Confidence            467899999999999999999999988   5555544332110    10  0        0111   1122223356655


Q ss_pred             EEEEcCc------------cc-HHHHH---H-------HHhcCC-eEEEEEEcCHHHHHHHHHHhhCC
Q psy16778        113 GVLVCSA------------LR-RNYRD---I-------IRNNNR-VVFIYLKAEFGVILSRLQKRAEH  156 (433)
Q Consensus       113 ~Vi~~~~------------~~-~~~~~---~-------l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~  156 (433)
                      +|.+-+.            .. .++.+   .       +.+.+. ++++||+.|+++..+|+.+|...
T Consensus       147 vIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~d  214 (304)
T 3czq_A          147 VLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHD  214 (304)
T ss_dssp             EEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHC
T ss_pred             EEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcC
Confidence            5555322            11 11212   1       222222 68899999999999999888643

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.77  E-value=9.4e-05  Score=71.43  Aligned_cols=40  Identities=20%  Similarity=0.216  Sum_probs=32.3

Q ss_pred             CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCC
Q psy16778         31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGD   70 (433)
Q Consensus        31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D   70 (433)
                      +++.+.+|.+++|+|++||||||+.+.|++.+    |...++..
T Consensus       164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~  207 (330)
T 2pt7_A          164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT  207 (330)
T ss_dssp             HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS
T ss_pred             hhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe
Confidence            44556788999999999999999999999876    55556543

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=96.77  E-value=0.011  Score=56.42  Aligned_cols=153  Identities=9%  Similarity=0.004  Sum_probs=92.2

Q ss_pred             CCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEe-c--------------------------CCC
Q psy16778        239 RTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILS-T--------------------------IST  291 (433)
Q Consensus       239 ~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s-~--------------------------~s~  291 (433)
                      +|++++++|.+++.||++|+..    ...+++.  .+.+.+.|+.++.. +                          +.+
T Consensus         2 ~dl~~~i~g~~l~nPi~~Aag~----~~~~~~~--~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~   75 (314)
T 2e6f_A            2 MCLKLNLLDHVFANPFMNAAGV----LCSTEED--LRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPN   75 (314)
T ss_dssp             CCCCEEETTEEESSSEEECTTS----SCSSHHH--HHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCB
T ss_pred             CCcceEECCEecCCCcEECCCC----CCCCHHH--HHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCC
Confidence            4889999999999999999632    2334443  56678888887543 1                          122


Q ss_pred             CCHHH----HHHh-C-CCCcceEEEeeccCHHHHHHHHHHHHHcCCc---EEEEeeeecccCccccccccccCCCccchH
Q psy16778        292 TSIEE----LAEK-T-PQTTKWFQLYIYRDREITKSLVQRAEKAGYK---ALVLTVDTNVFGTRYADIRNKFNMPSHLNI  362 (433)
Q Consensus       292 ~~~ee----va~~-~-~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~---~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~  362 (433)
                      ...+.    +... . ++.+...|+.. .+.+...+.+++++++|+.   .+-+++..|.. .+.++.-.   .+ . .+
T Consensus        76 ~g~~~~~~~~~~~~~~~~~p~~~~i~g-~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~-~g~~~~g~---~~-~-~~  148 (314)
T 2e6f_A           76 LGFDFYLKYASDLHDYSKKPLFLSISG-LSVEENVAMVRRLAPVAQEKGVLLELNLSCPNV-PGKPQVAY---DF-E-AM  148 (314)
T ss_dssp             SCHHHHHHHHHHTCCTTTCCEEEEECC-SSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCS-TTCCCGGG---SH-H-HH
T ss_pred             cCHHHHHHHHHHHhhcCCCcEEEEeCC-CCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCC-CCchhhcC---CH-H-HH
Confidence            33333    3222 1 34556777764 3445555788888888999   89998876665 22211100   00 0 12


Q ss_pred             HHHH----hhCCCcchhhhhhccCCHHHHHHHHHHHHHcC-CcEEEEe
Q psy16778        363 EELA----EKTPQTTKWFQLYIYRDREITKSLVQRAEKAG-YKALVLT  405 (433)
Q Consensus       363 e~i~----~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G-~~aivlT  405 (433)
                      .++.    +... -+.+..+....+..-..+.+++++++| +++|+++
T Consensus       149 ~~ii~~vr~~~~-~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~  195 (314)
T 2e6f_A          149 RTYLQQVSLAYG-LPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCV  195 (314)
T ss_dssp             HHHHHHHHHHHC-SCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred             HHHHHHHHHhcC-CCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEe
Confidence            2222    2222 233444444445566677799999999 9999875

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=96.75  E-value=0.00053  Score=75.64  Aligned_cols=35  Identities=14%  Similarity=-0.011  Sum_probs=29.4

Q ss_pred             cccCCCCCCCCC-------CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         26 TTTLSPSGEGSP-------STVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        26 ~~~~~~~~~~~~-------~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..+++++++...       |.+++|+||+||||||+.|.+ +.
T Consensus       770 ~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl  811 (1022)
T 2o8b_B          770 FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL  811 (1022)
T ss_dssp             CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred             eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence            356677777765       899999999999999999998 53

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.73  E-value=0.00045  Score=68.71  Aligned_cols=44  Identities=23%  Similarity=0.011  Sum_probs=30.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ++.+.+|++.|+...          .+.++++      .|+|+|++||||||+.+.|.+.
T Consensus        11 ~l~~~~l~~~y~~~~----------vl~~vsf------~I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           11 YVGFANLPNQVYRKS----------VKRGFEF------TLMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             ----CCCCCCTTTTT----------CC-CCCE------EEEEECCTTSSHHHHHHHHTTC
T ss_pred             cEEEEecceeECCEE----------EecCCCE------EEEEECCCCCcHHHHHHHHhCC
Confidence            467888999887622          3334444      3599999999999999999874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.70  E-value=0.0015  Score=56.47  Aligned_cols=27  Identities=37%  Similarity=0.549  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+..++|+|++|+||||+++.+++.+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345679999999999999999999987

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.67  E-value=0.0011  Score=60.32  Aligned_cols=29  Identities=24%  Similarity=0.351  Sum_probs=26.1

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .-+.+|.+++|+|++||||||+++.++..
T Consensus        19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           19 GGIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34678999999999999999999999984

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.67  E-value=0.0041  Score=61.97  Aligned_cols=38  Identities=29%  Similarity=0.433  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH   73 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~   73 (433)
                      .++.+|+|+|++||||||++..|+..+     .+.+++.|...
T Consensus        95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r  137 (433)
T 3kl4_A           95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR  137 (433)
T ss_dssp             SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence            357899999999999999999999876     33467777654

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=96.67  E-value=0.0028  Score=61.73  Aligned_cols=154  Identities=19%  Similarity=0.182  Sum_probs=92.4

Q ss_pred             hhhcceeecccccCCC--CCCceeeeC-CCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHH
Q psy16778        222 ALKVLRIRPRVMRDLS--KRTLVTDAL-GHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELA  298 (433)
Q Consensus       222 a~~~~~l~pr~l~~~~--~~d~~~~~~-g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva  298 (433)
                      .|+++.|+|. +.++.  ++|++|.+. +..+..||+.+|+..  .    .+..+|.+.+++|..-++..  +.+.|+..
T Consensus        15 ~fddv~lvp~-~~~~~~~~vdl~t~lt~~~~l~~Pii~apM~~--v----s~~~lA~avA~aGGlg~i~~--~~s~e~~~   85 (366)
T 4fo4_A           15 TFDDVLLVPA-HSTVLPNTADLRTRLTKNIALNIPMVSASMDT--V----TEARLAIALAQEGGIGFIHK--NMSIEQQA   85 (366)
T ss_dssp             CGGGEEECCC-CCCCCGGGCBCCEEEETTEEESSSEEECCCTT--T----CSHHHHHHHHHTTCEEEECS--SSCHHHHH
T ss_pred             CcceEEEECC-CCCCChhhcccceecccccccCCCEEeCCCCC--C----ChHHHHHHHHHcCCceEeec--CCCHHHHH
Confidence            4677888886 44443  688999987 578999999999874  2    34567877777777666653  35667654


Q ss_pred             HhC----CCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccch---HHHHHhhCCC
Q psy16778        299 EKT----PQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLN---IEELAEKTPQ  371 (433)
Q Consensus       299 ~~~----~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s---~e~i~~~~~~  371 (433)
                      +..    ...+.-...-.....+ ..+.++.+.++|+..|++++.   .|.            +...   ++.+.+..++
T Consensus        86 ~~i~~vk~~~~l~vga~vg~~~~-~~~~~~~lieaGvd~I~idta---~G~------------~~~~~~~I~~ik~~~p~  149 (366)
T 4fo4_A           86 AQVHQVKISGGLRVGAAVGAAPG-NEERVKALVEAGVDVLLIDSS---HGH------------SEGVLQRIRETRAAYPH  149 (366)
T ss_dssp             HHHHHHHTTTSCCCEEECCSCTT-CHHHHHHHHHTTCSEEEEECS---CTT------------SHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhcCceeEEEEeccChh-HHHHHHHHHhCCCCEEEEeCC---CCC------------CHHHHHHHHHHHHhcCC
Confidence            321    1111122222222211 235677778899999887651   111            1111   2333333322


Q ss_pred             cchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEec
Q psy16778        372 TTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTV  406 (433)
Q Consensus       372 ~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTv  406 (433)
                            +.+......+.+.+++++++|+++|++.+
T Consensus       150 ------v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~  178 (366)
T 4fo4_A          150 ------LEIIGGNVATAEGARALIEAGVSAVKVGI  178 (366)
T ss_dssp             ------CEEEEEEECSHHHHHHHHHHTCSEEEECS
T ss_pred             ------CceEeeeeCCHHHHHHHHHcCCCEEEEec
Confidence                  22222234578889999999999999954

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.67  E-value=0.0013  Score=61.30  Aligned_cols=34  Identities=24%  Similarity=0.396  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG   69 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~   69 (433)
                      ..+..++|+|++|+||||+++.+++.++.+++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i   95 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   95 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            3456899999999999999999999998887654

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.0014  Score=65.59  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=31.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      ...+.-|+|.||||+|||++++.+|..++.+++..+
T Consensus       240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs  275 (467)
T 4b4t_H          240 IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI  275 (467)
T ss_dssp             CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence            356678999999999999999999999999986543

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=96.64  E-value=0.023  Score=53.97  Aligned_cols=152  Identities=9%  Similarity=0.020  Sum_probs=88.6

Q ss_pred             ceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCC-C--------------------------C
Q psy16778        241 LVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTIST-T--------------------------S  293 (433)
Q Consensus       241 ~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~-~--------------------------~  293 (433)
                      ++++++|.+++.||++||. .   .+.++|.  .+.+.+.|.-++..-.-+ .                          .
T Consensus         2 l~~~i~g~~l~npv~~Aag-~---~~~~~~~--~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g   75 (311)
T 1jub_A            2 LNTTFANAKFANPFMNASG-V---HCMTIED--LEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLG   75 (311)
T ss_dssp             CCEEETTEEESSSEEECTT-S---SCSSHHH--HHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSC
T ss_pred             CceEECCEEcCCCcEECCC-C---CCCCHHH--HHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcc
Confidence            5789999999999999962 2   2344543  566777777664321111 1                          1


Q ss_pred             HH----HHHHh---C-CCCcceEEEeeccCHHHHHHHHHHHHHcCCc-EEEEeeeecccCccccccccccCCCccchHHH
Q psy16778        294 IE----ELAEK---T-PQTTKWFQLYIYRDREITKSLVQRAEKAGYK-ALVLTVDTNVFGTRYADIRNKFNMPSHLNIEE  364 (433)
Q Consensus       294 ~e----eva~~---~-~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~-~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~  364 (433)
                      .+    ++...   . ++.+...|+.. .+.+...+.+++++++|+. ++.+.+..|.. .+.+.    +.. ..-.+.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~p~~~~i~g-~~~~~~~~~a~~~~~~g~d~~iein~~~P~~-~g~~~----~g~-~~e~~~~  148 (311)
T 1jub_A           76 FDYYLDYVLKNQKENAQEGPIFFSIAG-MSAAENIAMLKKIQESDFSGITELNLSCPNV-PGEPQ----LAY-DFEATEK  148 (311)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCEEEECC-SSHHHHHHHHHHHHHSCCCSEEEEESCCCCS-SSCCC----GGG-CHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEcCC-CCHHHHHHHHHHHHhcCCCeEEEEeccCCCC-CCccc----ccC-CHHHHHH
Confidence            23    22211   1 13456667653 3445556788888899999 89998876665 22211    110 0111233


Q ss_pred             HHhhC-C--CcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778        365 LAEKT-P--QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       365 i~~~~-~--~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT  405 (433)
                      +.+.. .  +-+.+..+....+.....+.++.++++|+++|+++
T Consensus       149 iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~  192 (311)
T 1jub_A          149 LLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSV  192 (311)
T ss_dssp             HHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEEC
T ss_pred             HHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence            33321 1  22344445444455566777899999999999884

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.64  E-value=0.00046  Score=73.15  Aligned_cols=30  Identities=30%  Similarity=0.391  Sum_probs=27.7

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHH
Q psy16778         26 TTTLSPSGEGSPSTVFVIMGVSGSGKSTIG   55 (433)
Q Consensus        26 ~~~~~~~~~~~~~~~I~l~G~~GsGKSTla   55 (433)
                      ..++++++++.+|.+++|+|+|||||||++
T Consensus        32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred             cceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence            357889999999999999999999999996

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.64  E-value=0.0013  Score=56.74  Aligned_cols=27  Identities=30%  Similarity=0.505  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+..++|+|++|+||||+++.+++.+
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345688999999999999999999987

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.0015  Score=64.72  Aligned_cols=35  Identities=20%  Similarity=0.469  Sum_probs=30.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      ..+.-|+|.||||+|||++++.+|..++.+++..+
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~  248 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV  248 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE
Confidence            45678999999999999999999999999886543

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.64  E-value=0.002  Score=60.99  Aligned_cols=31  Identities=29%  Similarity=0.488  Sum_probs=26.9

Q ss_pred             CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         30 SPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        30 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +.+++  ++.+|+|+|++|+||||+++.|+..+
T Consensus        92 ~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             CCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             eeecC--CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34455  88999999999999999999999876

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.63  E-value=0.00067  Score=60.71  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCC
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDH   71 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~   71 (433)
                      -+.+|.+++|+|++||||||++..++...|  +.+++.+.
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~   55 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG   55 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence            578899999999999999999999987333  34555544

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.63  E-value=0.00034  Score=74.15  Aligned_cols=34  Identities=32%  Similarity=0.315  Sum_probs=30.2

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q psy16778         26 TTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLA   59 (433)
Q Consensus        26 ~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La   59 (433)
                      ..++++++++.+|++++|+|+|||||||+.+.+.
T Consensus       336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             cccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            3578899999999999999999999999997543

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.63  E-value=0.0012  Score=64.71  Aligned_cols=28  Identities=29%  Similarity=0.383  Sum_probs=25.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..++.+|+|+|++||||||+.+.|++.+
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            5778999999999999999999999865

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.63  E-value=0.00064  Score=73.13  Aligned_cols=51  Identities=20%  Similarity=0.003  Sum_probs=36.7

Q ss_pred             eeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         10 RYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..=|+|++.....-+...+++++++ ..|.+++|+|++||||||+.|.++..
T Consensus       580 i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          580 ITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             EEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence            3345566532111122356777887 78899999999999999999999974

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=96.62  E-value=0.00083  Score=73.25  Aligned_cols=53  Identities=17%  Similarity=-0.080  Sum_probs=38.2

Q ss_pred             ceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778          8 NWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      +...-++|+......-+.-.+++++++..+|.+++|+||+||||||+.|.++.
T Consensus       632 i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial  684 (934)
T 3thx_A          632 IILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV  684 (934)
T ss_dssp             EEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44455666653322112235677888889999999999999999999999854

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.60  E-value=0.00063  Score=70.96  Aligned_cols=36  Identities=31%  Similarity=0.334  Sum_probs=29.6

Q ss_pred             ccCCCCCCCCCC-----eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         27 TTLSPSGEGSPS-----TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        27 ~~~~~~~~~~~~-----~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+.+++++...|     ++++|+|++||||||+++.|++.+
T Consensus       362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred             ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC
Confidence            455666666555     789999999999999999999854

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.60  E-value=0.0012  Score=64.62  Aligned_cols=34  Identities=26%  Similarity=0.534  Sum_probs=29.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      .+..++|+|++|+||||+++.+++.++.+++..+
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~  104 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD  104 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence            3457999999999999999999999988876544

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.57  E-value=0.0015  Score=56.74  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +..+++|+|++||||||+.+.|.+.+
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            34689999999999999999999865

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.56  E-value=0.002  Score=61.73  Aligned_cols=33  Identities=27%  Similarity=0.529  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG   69 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~   69 (433)
                      .+..++|.|++|+|||++++.+++.++..++..
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v   82 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV   82 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence            456899999999999999999999998887654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.56  E-value=0.0011  Score=60.38  Aligned_cols=40  Identities=15%  Similarity=0.224  Sum_probs=29.9

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCC
Q psy16778         32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDH   71 (433)
Q Consensus        32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~   71 (433)
                      ..-+.+|.+++|+|++||||||++..++...     ++.+++.+.
T Consensus        17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~   61 (247)
T 2dr3_A           17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE   61 (247)
T ss_dssp             TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            4456788999999999999999988776543     344555443

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.56  E-value=0.0016  Score=56.36  Aligned_cols=25  Identities=28%  Similarity=0.411  Sum_probs=22.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+|+|+|++||||||++..|...+
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhh
Confidence            4589999999999999999999876

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.56  E-value=0.0014  Score=63.70  Aligned_cols=27  Identities=33%  Similarity=0.507  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++.+|+|+|++||||||+.+.+++.+
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            566799999999999999999998876

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.55  E-value=0.0019  Score=61.25  Aligned_cols=37  Identities=32%  Similarity=0.442  Sum_probs=30.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh----C--CeEEeCCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL----G--VKFIDGDHL   72 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l----g--~~~id~D~~   72 (433)
                      .++.+|+|+|++||||||++..|+..+    |  +.+++.|..
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~  145 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY  145 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence            467899999999999999999999765    4  346777764

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.54  E-value=0.0012  Score=70.63  Aligned_cols=50  Identities=18%  Similarity=-0.043  Sum_probs=35.6

Q ss_pred             ceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          8 NWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +...-+.|+....  -+...+++++++   |.+++|+|++||||||+.|.++...
T Consensus       551 i~i~~~rHP~le~--~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          551 LQIRAGRHPVVER--RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             EEEEEECCTTGGG--TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             EEEEEeECceEcc--CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhh
Confidence            4455566664321  112355666666   9999999999999999999999753

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.52  E-value=0.0015  Score=61.58  Aligned_cols=32  Identities=28%  Similarity=0.506  Sum_probs=27.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFID   68 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id   68 (433)
                      .+..++|+|++|+||||+++.+++.++.+++.
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~   80 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK   80 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            45679999999999999999999999876653

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.52  E-value=0.00042  Score=67.15  Aligned_cols=33  Identities=24%  Similarity=0.243  Sum_probs=28.5

Q ss_pred             CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         30 SPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        30 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +.++...++.+|+|+|++|+||||+.+.|+..+
T Consensus        48 ~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           48 AIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             HHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            344567889999999999999999999999765

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.50  E-value=0.0018  Score=62.81  Aligned_cols=31  Identities=26%  Similarity=0.433  Sum_probs=28.5

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+.+..|.++.|+|++||||||+++.++...
T Consensus       125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4677899999999999999999999999876

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.48  E-value=0.0026  Score=64.31  Aligned_cols=32  Identities=22%  Similarity=0.438  Sum_probs=27.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDG   69 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~   69 (433)
                      +.-|+|+|+||+||||+++.+++.++.+++..
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~i   80 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHI   80 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence            34499999999999999999999999887643

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.43  E-value=0.00081  Score=62.38  Aligned_cols=31  Identities=23%  Similarity=0.439  Sum_probs=26.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDG   69 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~   69 (433)
                      ..++|+|++|+||||+++.+++.++.+++..
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~v   75 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM   75 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            3488999999999999999999998776543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.42  E-value=0.0026  Score=60.95  Aligned_cols=32  Identities=28%  Similarity=0.541  Sum_probs=27.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEE
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL-GVKFI   67 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l-g~~~i   67 (433)
                      ..+..|+|.|++|+|||++++.+++.+ +..++
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~   75 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFF   75 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence            345789999999999999999999998 66654

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.42  E-value=0.0025  Score=61.95  Aligned_cols=34  Identities=29%  Similarity=0.633  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG   69 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~   69 (433)
                      ..+..|+|+|++|+||||+++.+++.++..++..
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i  148 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSI  148 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence            3467899999999999999999999998887643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.40  E-value=0.0016  Score=61.96  Aligned_cols=26  Identities=31%  Similarity=0.381  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+.+++|+|+|||||||+.+.|. .+
T Consensus       163 l~G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          163 LEGFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            467899999999999999999999 65

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.39  E-value=0.002  Score=62.60  Aligned_cols=33  Identities=27%  Similarity=0.529  Sum_probs=28.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG   69 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~   69 (433)
                      .+..|+|.|++|+|||++++.++..++..++..
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v  115 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV  115 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence            345699999999999999999999999887654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.33  E-value=0.0021  Score=53.88  Aligned_cols=27  Identities=19%  Similarity=0.201  Sum_probs=23.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+..|+|.|++|+|||++++.++...
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            344679999999999999999999865

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.33  E-value=0.00092  Score=72.74  Aligned_cols=35  Identities=20%  Similarity=0.186  Sum_probs=31.6

Q ss_pred             cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         26 TTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        26 ~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..+++++++..+|.+++|+||+||||||+.+.++.
T Consensus       661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             eecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence            46678888999999999999999999999999875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.32  E-value=0.0028  Score=59.87  Aligned_cols=27  Identities=30%  Similarity=0.517  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+..++|+|++|+||||+++.+++.+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999988

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.31  E-value=0.0025  Score=57.52  Aligned_cols=36  Identities=14%  Similarity=0.131  Sum_probs=29.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHL   72 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~   72 (433)
                      .+..++|+|++|+||||+++.+++.++     +.+++..++
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~   91 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH   91 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            567999999999999999999998773     345665554

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.30  E-value=0.00055  Score=67.96  Aligned_cols=37  Identities=30%  Similarity=0.277  Sum_probs=32.1

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778         27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGV   64 (433)
Q Consensus        27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~   64 (433)
                      .+.++++++..| +++|+|++||||||+.+.|...++.
T Consensus        50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~   86 (415)
T 4aby_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGG   86 (415)
T ss_dssp             TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred             ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence            445677889999 9999999999999999999987764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.30  E-value=0.0015  Score=61.98  Aligned_cols=27  Identities=26%  Similarity=0.441  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+.+++|+|+|||||||+.+.|+...
T Consensus       167 l~geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          167 LKGKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             hcCCeEEEECCCCCcHHHHHHHhcccc
Confidence            467899999999999999999999855

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=96.28  E-value=0.01  Score=56.06  Aligned_cols=152  Identities=13%  Similarity=0.132  Sum_probs=73.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCCCcCChhHHHH--------------
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN--------------   98 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------   98 (433)
                      ...+..|+|+||   ||+|+.+.|.+.+.  +.+.-....+.......-...+-|-. ....+...              
T Consensus       102 ~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~-s~eef~~~i~~g~flE~~~~~g  177 (295)
T 1kjw_A          102 VHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVS-SREKMEKDIQAHKFIEAGQYNS  177 (295)
T ss_dssp             CCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECS-CHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecC-CHHHHHHHHHCCCcEEEEEEcC
Confidence            356778999998   79999999998763  22211111111110000011121210 11111111              


Q ss_pred             -----HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcC-HHHHHHHHHHhhCCCCCHHhHHHHHhhc-
Q psy16778         99 -----INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAE-FGVILSRLQKRAEHFMPADLLESQFQTL-  170 (433)
Q Consensus        99 -----~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~-~e~l~~Rl~~R~~~~~~~~~l~~~~~~~-  170 (433)
                           -...+...+.+|..+|++....-.   ..++.... .++|||..+ .+++.+ +.+|+..    +.+..+++.- 
T Consensus       178 ~~YGt~~~~V~~~~~~G~~vildid~~g~---~~l~~~~~~pi~IfI~pps~~~L~~-L~~R~t~----~~i~~rl~~a~  249 (295)
T 1kjw_A          178 HLYGTSVQSVREVAEQGKHCILDVSANAV---RRLQAAHLHPIAIFIRPRSLENVLE-INKRITE----EQARKAFDRAT  249 (295)
T ss_dssp             EEEEEEHHHHHHHHHTTCEEEECCCTTHH---HHHHHTTCCCEEEEECCSSHHHHHH-HCTTSCH----HHHHHHHHHHH
T ss_pred             cEeeeeHHHHHHHHhcCCeEEEEeCHHHH---HHHHhcccCCeEEEEECCCHHHHHH-HHhcCCH----HHHHHHHHHHH
Confidence                 122355566778888888764222   22332111 478999876 666655 7766531    2222222111 


Q ss_pred             --cCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        171 --EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       171 --~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                        +..+  ....+.+|.++ +.++..+++...+
T Consensus       250 ~~e~~~--~~~fd~vivNd-~le~a~~~l~~ii  279 (295)
T 1kjw_A          250 KLEQEF--TECFSAIVEGD-SFEEIYHKVKRVI  279 (295)
T ss_dssp             HHHHHH--GGGCSEEECCS-SHHHHHHHHHHHH
T ss_pred             HHHHhc--cccCeEEEECc-CHHHHHHHHHHHH
Confidence              1000  01133556665 6777777766554

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.26  E-value=0.0034  Score=61.72  Aligned_cols=34  Identities=21%  Similarity=0.514  Sum_probs=29.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      .+..|+|.|++|+|||++++.++..++..++..+
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~  180 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS  180 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEee
Confidence            3578999999999999999999999998876554

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.25  E-value=0.003  Score=60.63  Aligned_cols=33  Identities=15%  Similarity=0.294  Sum_probs=28.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      ...++|+|++|+||||+++.+++.++.+++..+
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~   87 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSANIKTTA   87 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence            357999999999999999999999988776543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.25  E-value=0.00034  Score=69.40  Aligned_cols=37  Identities=19%  Similarity=0.069  Sum_probs=31.1

Q ss_pred             cccCCCCCCCCCCe--------------------EEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         26 TTTLSPSGEGSPST--------------------VFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        26 ~~~~~~~~~~~~~~--------------------~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..++++++++.+|.                    +++|+|++||||||+.+.|++.+
T Consensus        37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence            35556677777887                    99999999999999999999843

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.23  E-value=0.0019  Score=61.80  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=22.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +-++++|+|++||||||+.+.|.+..
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhc
Confidence            34689999999999999999999753

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.22  E-value=0.0035  Score=64.14  Aligned_cols=34  Identities=24%  Similarity=0.406  Sum_probs=29.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      .+..++|+|++|+||||+++.+++.+|+.++..+
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in  109 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN  109 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence            3468999999999999999999999998876544

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.20  E-value=0.0042  Score=58.80  Aligned_cols=41  Identities=27%  Similarity=0.373  Sum_probs=32.3

Q ss_pred             CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCC
Q psy16778         31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHL   72 (433)
Q Consensus        31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~   72 (433)
                      .+++.. +.+|+++|++|+||||++..|+..+     .+.+++.|..
T Consensus        92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~  137 (297)
T 1j8m_F           92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY  137 (297)
T ss_dssp             CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            445555 8999999999999999999999877     3456777754

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.18  E-value=0.0032  Score=63.39  Aligned_cols=33  Identities=27%  Similarity=0.527  Sum_probs=28.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDG   69 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~   69 (433)
                      .+..++|.|+||+|||++++.+++.++  .+++..
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~   96 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM   96 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence            346799999999999999999999998  666543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.18  E-value=0.0032  Score=55.57  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..++|+|++|+||||+++.++..+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            789999999999999999999877

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.15  E-value=0.0035  Score=54.90  Aligned_cols=26  Identities=31%  Similarity=0.189  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++++++|++||||||++-.++.++
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence            46899999999999999986666554

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.13  E-value=0.0015  Score=61.97  Aligned_cols=39  Identities=23%  Similarity=0.080  Sum_probs=19.7

Q ss_pred             ccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778          6 FGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ++|++.|+..          ..+.+.+      ..|+|+|++||||||+.+.|..
T Consensus         2 ~~l~~~~~~~----------~~l~~~~------~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A            2 SNLPNQVHRK----------SVKKGFE------FTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             --------------------------C------EEEEEEEETTSSHHHHHHHHHC
T ss_pred             CCCcceECCE----------EEEcCCC------EEEEEECCCCCCHHHHHHHHhC
Confidence            4677778752          2333333      3569999999999999999875

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.13  E-value=0.0025  Score=61.98  Aligned_cols=33  Identities=24%  Similarity=0.197  Sum_probs=27.5

Q ss_pred             CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         29 LSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        29 ~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+.++++.++ +.+|+|++||||||+...+....
T Consensus        18 ~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~   50 (359)
T 2o5v_A           18 APGTLNFPEG-VTGIYGENGAGKTNLLEAAYLAL   50 (359)
T ss_dssp             CSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence            3455677788 99999999999999999998643

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.13  E-value=0.0033  Score=58.82  Aligned_cols=29  Identities=28%  Similarity=0.374  Sum_probs=26.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      -+.+|.+++|+|++||||||++..++..+
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999999999754

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.08  E-value=0.0037  Score=66.94  Aligned_cols=36  Identities=25%  Similarity=0.417  Sum_probs=31.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      ...+.-|+|.||||+|||++++.+|..+|..++..+
T Consensus       235 ~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~  270 (806)
T 3cf2_A          235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN  270 (806)
T ss_dssp             CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence            355678999999999999999999999999886544

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=96.07  E-value=0.019  Score=58.05  Aligned_cols=105  Identities=12%  Similarity=0.177  Sum_probs=59.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNL  111 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (433)
                      .+.+.+|+|-|.-||||+|+.+.|.+.+   |+.++....-...    .  .+.+        ++.   .....+-..|.
T Consensus        40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~----E--~~~~--------yl~---R~~~~lP~~G~  102 (500)
T 3czp_A           40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDE----E--LERP--------PQW---RFWRRLPPKGR  102 (500)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHH----H--HTSC--------TTH---HHHHHCCCTTC
T ss_pred             CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChh----h--ccCC--------hhh---hHHHhCCCCCe
Confidence            3577999999999999999999999988   5555544332111    0  0111        111   12223344555


Q ss_pred             cEEEEcCc------------cc-HHHHHH----------HHhcCC-eEEEEEEcCHHHHHHHHHHhhCC
Q psy16778        112 TGVLVCSA------------LR-RNYRDI----------IRNNNR-VVFIYLKAEFGVILSRLQKRAEH  156 (433)
Q Consensus       112 ~~Vi~~~~------------~~-~~~~~~----------l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~  156 (433)
                      .+|.+-+-            .. ..+.+.          |.+.+- ++++||+.|+++..+|+.+|...
T Consensus       103 IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~  171 (500)
T 3czp_A          103 TGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKD  171 (500)
T ss_dssp             EEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC------
T ss_pred             EEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcC
Confidence            55555332            11 111111          222222 68999999999999999998653

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.07  E-value=0.0061  Score=60.57  Aligned_cols=40  Identities=25%  Similarity=0.423  Sum_probs=31.7

Q ss_pred             CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCC
Q psy16778         31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHL   72 (433)
Q Consensus        31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~   72 (433)
                      ++++  ++.+|+|+|++||||||++..|+..+     .+.+++.|..
T Consensus        93 i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~  137 (425)
T 2ffh_A           93 PVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ  137 (425)
T ss_dssp             CCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred             ccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence            4444  78899999999999999999999877     2345666654

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.07  E-value=0.0035  Score=61.10  Aligned_cols=56  Identities=9%  Similarity=-0.019  Sum_probs=39.9

Q ss_pred             cccccceeeeccCCccceeeeeec---------ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMT---------TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +.+++|++.|....    ..++..         ...|..+...+|..++|+|++|+||||+++.|++..
T Consensus       134 i~Fe~ltp~yP~er----~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          134 ILFENLTPLHANSR----LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             CCTTTSCEESCCSB----CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             ceeccccccCCCCc----cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            45778888885422    111100         112566788999999999999999999999998854

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.06  E-value=0.0037  Score=59.70  Aligned_cols=26  Identities=19%  Similarity=0.300  Sum_probs=23.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+..++|+|++|+||||+++.+++.+
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            45689999999999999999999987

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.98  E-value=0.0029  Score=55.18  Aligned_cols=30  Identities=27%  Similarity=0.378  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCC--eEEeCC
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGV--KFIDGD   70 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~--~~id~D   70 (433)
                      +|+|+|++||||||+|..|+.. |.  .|+++.
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~   32 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD-APQVLYIATS   32 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred             CEEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence            3789999999999999999976 64  355554

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.97  E-value=0.0054  Score=61.51  Aligned_cols=32  Identities=28%  Similarity=0.531  Sum_probs=27.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh-CCeEEe
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL-GVKFID   68 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l-g~~~id   68 (433)
                      .+..|+|.|++|+|||++++.++..+ +..++.
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~  198 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFS  198 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEE
Confidence            44689999999999999999999998 766654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.95  E-value=0.0031  Score=64.37  Aligned_cols=28  Identities=18%  Similarity=0.214  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +.+|.+++|+|++||||||+++.|+..+
T Consensus       257 v~~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          257 IEHKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             HHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             HhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4678899999999999999999999866

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.93  E-value=0.0017  Score=54.31  Aligned_cols=31  Identities=13%  Similarity=0.216  Sum_probs=25.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFID   68 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id   68 (433)
                      .+..|+|.|++|+|||++++.++...+ +++.
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~   56 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVS   56 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGGCCTTS-CEEC
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHhCC-CeEE
Confidence            345699999999999999999998766 4443

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.92  E-value=0.0053  Score=59.50  Aligned_cols=33  Identities=21%  Similarity=0.430  Sum_probs=27.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEe
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL------GVKFID   68 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id   68 (433)
                      ..+..++|+|++|+||||+++.+++.+      +..++.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~   81 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVY   81 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence            456789999999999999999999987      665543

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.91  E-value=0.0062  Score=57.88  Aligned_cols=36  Identities=31%  Similarity=0.441  Sum_probs=31.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH   73 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~   73 (433)
                      .|.-++|+|+||+||||++..|.++ |..++..|.+.
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~  178 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE  178 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEE
Confidence            5788999999999999999999985 99988777654

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.90  E-value=0.0068  Score=60.80  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=28.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      ..++|.|++|+||||+++.+++.++..++...
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~   82 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERIS   82 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence            57999999999999999999999988876544

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.88  E-value=0.0045  Score=60.10  Aligned_cols=26  Identities=27%  Similarity=0.369  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +|.+++|+|+|||||||+.+.|+..+
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccc
Confidence            67899999999999999999998754

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.84  E-value=0.0062  Score=61.84  Aligned_cols=35  Identities=26%  Similarity=0.460  Sum_probs=29.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      ..+..++|+|++|+|||++++.++..++.+++..+
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn  270 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN  270 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence            45567999999999999999999999988876533

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.83  E-value=0.0074  Score=58.53  Aligned_cols=40  Identities=28%  Similarity=0.415  Sum_probs=32.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh----C-CeEEeCCCCC
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRL----G-VKFIDGDHLH   73 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l----g-~~~id~D~~~   73 (433)
                      =+..|.++.|.|++||||||++..++..+    + +.|++++...
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~  101 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL  101 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence            35678999999999999999999999865    2 4578877654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.81  E-value=0.0056  Score=54.78  Aligned_cols=27  Identities=30%  Similarity=0.539  Sum_probs=23.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGV   64 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~   64 (433)
                      +..++|+|++|+||||+++.+++.++.
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            348999999999999999999998753

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.80  E-value=0.0048  Score=59.93  Aligned_cols=28  Identities=25%  Similarity=0.583  Sum_probs=25.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ...+..++|+|++|+||||+++.+++.+
T Consensus        41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           41 GEKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            3556789999999999999999999987

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=95.79  E-value=0.0072  Score=60.25  Aligned_cols=29  Identities=34%  Similarity=0.471  Sum_probs=25.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      +..+.+++|+|++||||||+...+...++
T Consensus        23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A           23 FGESNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            55688999999999999999999998664

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.78  E-value=0.0047  Score=58.74  Aligned_cols=31  Identities=32%  Similarity=0.619  Sum_probs=27.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFI   67 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~i   67 (433)
                      .+..++|+|++|+||||+++.+++.++..++
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            3467999999999999999999999987664

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.77  E-value=0.0064  Score=57.39  Aligned_cols=24  Identities=33%  Similarity=0.700  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..++|+|++|+||||+++.+++.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            589999999999999999999987

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=95.76  E-value=0.013  Score=55.47  Aligned_cols=155  Identities=13%  Similarity=0.156  Sum_probs=84.2

Q ss_pred             CCCCceeeeCCCccCCceeechhhhccccCccchHHHHHH--HHhcCCceEEe-----------------------c--C
Q psy16778        237 SKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAA--VGEVGGIYILS-----------------------T--I  289 (433)
Q Consensus       237 ~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~a--a~~~g~~~~~s-----------------------~--~  289 (433)
                      +++|++++++|.+++.||+++| |+.+...   +.  .+.  +...|...+-|                       .  .
T Consensus         3 ~~~~l~~~~~g~~l~npi~~aa-g~~~~~~---~~--~~~~~~~g~G~~~~~si~~~p~~g~~~p~l~~~~~g~~~~~g~   76 (311)
T 1ep3_A            3 ENNRLSVKLPGLDLKNPIIPAS-GCFGFGE---EY--AKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGL   76 (311)
T ss_dssp             CCTTTCEEETTEEESSSEEECT-TSSTTST---TG--GGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCC
T ss_pred             CCCccceEECCEECCCCcEECC-CCCCCCH---HH--HHHHHhcCCCEEEeCeeccCccCCCCCCeEEECCcccccccCC
Confidence            5789999999999999999999 3333221   11  222  23445443211                       1  1


Q ss_pred             CCCCHHHHH-------Hh-CCCCcceEEEeeccCHHHHHHHHHHHHH-cCCcEEEEeeeecccCccccccccccCCCccc
Q psy16778        290 STTSIEELA-------EK-TPQTTKWFQLYIYRDREITKSLVQRAEK-AGYKALVLTVDTNVFGTRYADIRNKFNMPSHL  360 (433)
Q Consensus       290 s~~~~eeva-------~~-~~~~~~w~qly~~~d~~~~~~~~~~A~~-ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~  360 (433)
                      .+.+.+++.       .. .++.+...|+... +.+...+.++++++ +|+..|-+.+..|..-.+.    ..+...+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~p~~v~l~~~-~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~----~~~g~~~~~  151 (311)
T 1ep3_A           77 QNPGLEVIMTEKLPWLNENFPELPIIANVAGS-EEADYVAVCAKIGDAANVKAIELNISCPNVKHGG----QAFGTDPEV  151 (311)
T ss_dssp             CBCCHHHHHHTHHHHHHHHCTTSCEEEEECCS-SHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTT----EEGGGCHHH
T ss_pred             CCcCHHHHHHHHHHHHHhcCCCCcEEEEEcCC-CHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCch----hhhcCCHHH
Confidence            233444431       12 3356788888765 34444567777777 8999999987655531110    011101111


Q ss_pred             ---hHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778        361 ---NIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       361 ---s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT  405 (433)
                         -++.+.+... -+.+..++.  +-.-..+.+++++++|+++|.++
T Consensus       152 ~~eii~~v~~~~~-~pv~vk~~~--~~~~~~~~a~~l~~~G~d~i~v~  196 (311)
T 1ep3_A          152 AAALVKACKAVSK-VPLYVKLSP--NVTDIVPIAKAVEAAGADGLTMI  196 (311)
T ss_dssp             HHHHHHHHHHHCS-SCEEEEECS--CSSCSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHhcC-CCEEEEECC--ChHHHHHHHHHHHHcCCCEEEEe
Confidence               1222222222 122222221  11123567899999999999994

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.76  E-value=0.0074  Score=58.73  Aligned_cols=27  Identities=15%  Similarity=0.395  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+..++|+|++|+||||+++.+++.+
T Consensus        43 ~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           43 EVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999987

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.74  E-value=0.0046  Score=56.23  Aligned_cols=26  Identities=35%  Similarity=0.616  Sum_probs=22.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .....|+|+|.+|+||||+...|.+.
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCC
Confidence            34468999999999999999998864

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.74  E-value=0.0068  Score=58.75  Aligned_cols=27  Identities=30%  Similarity=0.294  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+.+|+|+|++||||||+...|.+.+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            447899999999999999999999865

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.71  E-value=0.008  Score=53.43  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=26.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFI   67 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~i   67 (433)
                      .++...++|.||||+||||++..|++.++-..+
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~   87 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI   87 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence            344457999999999999999999998754443

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.71  E-value=0.0055  Score=52.59  Aligned_cols=25  Identities=36%  Similarity=0.457  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ++..|+|+|.+|+||||+.+.|...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999999864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=95.70  E-value=0.0011  Score=71.53  Aligned_cols=34  Identities=29%  Similarity=0.248  Sum_probs=29.8

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHH-HHH
Q psy16778         27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGES-LAT   60 (433)
Q Consensus        27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~-La~   60 (433)
                      .++++++++..|.+++|+|++|||||||++. |+.
T Consensus       512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g  546 (842)
T 2vf7_A          512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD  546 (842)
T ss_dssp             TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred             ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence            4667788999999999999999999999996 654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.69  E-value=0.0063  Score=53.75  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..++|+|++|+||||+++.+++.+
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            359999999999999999999876

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=95.65  E-value=0.0033  Score=68.29  Aligned_cols=28  Identities=36%  Similarity=0.430  Sum_probs=26.1

Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCHHHHH
Q psy16778         28 TLSPSGEGSPSTVFVIMGVSGSGKSTIG   55 (433)
Q Consensus        28 ~~~~~~~~~~~~~I~l~G~~GsGKSTla   55 (433)
                      +++.++++++++.++|||+||||||||+
T Consensus        14 Lkni~~~ip~~~l~v~tG~SGSGKSsLa   41 (916)
T 3pih_A           14 LKNITVRIPKNRLVVITGVSGSGKSSLA   41 (916)
T ss_dssp             CCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred             cCcceeccCCCcEEEEECCCCCcHHHHH
Confidence            5678899999999999999999999998

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.64  E-value=0.0068  Score=58.75  Aligned_cols=27  Identities=33%  Similarity=0.585  Sum_probs=24.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGV   64 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~   64 (433)
                      +..++|+|++|+||||+++.+++.++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            468999999999999999999999864

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.63  E-value=0.0082  Score=54.27  Aligned_cols=27  Identities=22%  Similarity=0.043  Sum_probs=23.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++.+++++|++|+||||++-.++.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            457899999999999999998888777

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.63  E-value=0.0067  Score=53.26  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|++||||||+.+.|...
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            57999999999999999999985

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=95.63  E-value=0.0029  Score=68.19  Aligned_cols=29  Identities=34%  Similarity=0.363  Sum_probs=25.6

Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCHHHHHH
Q psy16778         28 TLSPSGEGSPSTVFVIMGVSGSGKSTIGE   56 (433)
Q Consensus        28 ~~~~~~~~~~~~~I~l~G~~GsGKSTla~   56 (433)
                      +++++++++.+..++|||.||||||||+-
T Consensus        26 Lkni~v~iP~~~l~viTGvSGSGKSSLaf   54 (842)
T 2vf7_A           26 LKDISVKVPRDALVVFTGVSGSGKSSLAF   54 (842)
T ss_dssp             CCSEEEEEESSSEEEEESSTTSSHHHHHT
T ss_pred             CCCeeEEecCCCEEEEECCCCCCHHHHHH
Confidence            45677788999999999999999999983

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.62  E-value=0.0088  Score=58.18  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++|+|++|+||||+++.+++.+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            89999999999999999999988

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.61  E-value=0.0051  Score=58.87  Aligned_cols=30  Identities=23%  Similarity=0.371  Sum_probs=26.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFI   67 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~i   67 (433)
                      +..++|.|++|+|||++++.+++.++..++
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~   75 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFH   75 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence            457999999999999999999999987654

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.60  E-value=0.0082  Score=53.27  Aligned_cols=25  Identities=28%  Similarity=0.406  Sum_probs=20.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..+|+++++|++|||||+++..+..
T Consensus         3 ~~~mi~l~tG~pGsGKT~~a~~~~~   27 (199)
T 2r2a_A            3 AMAEICLITGTPGSGKTLKMVSMMA   27 (199)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEEEeCCCCCHHHHHHHHHH
Confidence            4568999999999999999887643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.57  E-value=0.0023  Score=60.91  Aligned_cols=30  Identities=27%  Similarity=0.311  Sum_probs=25.2

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++..+|.+++|+|+|||||||+.+.|...+
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence            456678999999999999999999998654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=95.56  E-value=0.0018  Score=70.29  Aligned_cols=32  Identities=34%  Similarity=0.350  Sum_probs=29.3

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHH
Q psy16778         27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESL   58 (433)
Q Consensus        27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~L   58 (433)
                      .+.++++++..|.+++|+|++|||||||++.+
T Consensus       639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~l  670 (972)
T 2r6f_A          639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV  670 (972)
T ss_dssp             SCCSEEEEEESSSEEECCBCTTSSHHHHHTTT
T ss_pred             ccccceEEEcCCCEEEEEcCCCCCHHHHHHHH
Confidence            46778889999999999999999999999985

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.56  E-value=0.0092  Score=60.22  Aligned_cols=26  Identities=35%  Similarity=0.580  Sum_probs=23.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+..++|+|+||+||||+++.|++.+
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            44578999999999999999999987

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.55  E-value=0.01  Score=57.67  Aligned_cols=36  Identities=36%  Similarity=0.388  Sum_probs=28.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDH   71 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~   71 (433)
                      .+..+|+|+|.+|+||||+...|+..+     .+.+++.|.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp  117 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP  117 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence            456799999999999999999999876     334566663

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=95.52  E-value=0.0066  Score=57.59  Aligned_cols=36  Identities=25%  Similarity=0.310  Sum_probs=31.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH   73 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~   73 (433)
                      .|.-|+|+|+||+||||++-.|.+ .|+.++.-|.+.
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~  181 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIE  181 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEE
Confidence            567899999999999999999876 499888888664

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.51  E-value=0.011  Score=51.96  Aligned_cols=28  Identities=32%  Similarity=0.092  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..++++++++|++||||||.+-.++.++
T Consensus         5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            5 KDHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            4567899999999999999998888877

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=95.50  E-value=0.029  Score=52.20  Aligned_cols=105  Identities=16%  Similarity=0.211  Sum_probs=61.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcE
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTG  113 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (433)
                      .+.+|+|-|.-||||+++.+.|.+.+   |+.++....-...    .          ....++-   .....+-..|..+
T Consensus        74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~e----E----------~~~~ylw---R~~~~lP~~G~I~  136 (289)
T 3rhf_A           74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDE----E----------KSHDFLW---RIEKQVPAAGMVG  136 (289)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHH----H----------HTSCTTH---HHHTTCCCTTCEE
T ss_pred             CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChh----h----------hcCCHHH---HHHHhCCCCCeEE
Confidence            46799999999999999999999988   5555544332110    0          0001111   1122233445444


Q ss_pred             EEEcCcc-------------cHHHHH----------HHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCC
Q psy16778        114 VLVCSAL-------------RRNYRD----------IIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFM  158 (433)
Q Consensus       114 Vi~~~~~-------------~~~~~~----------~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~  158 (433)
                      |++.+-.             ...+..          .|.+.+- ++.+||+.|.++..+|+.+|...+.
T Consensus       137 IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~  205 (289)
T 3rhf_A          137 VFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPS  205 (289)
T ss_dssp             EEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGG
T ss_pred             EEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCc
Confidence            5543320             011111          2222222 5779999999999999999875543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.49  E-value=0.0072  Score=58.25  Aligned_cols=24  Identities=25%  Similarity=0.427  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..++|+|++|+||||+++.+++.+
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            349999999999999999999965

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=95.49  E-value=0.0034  Score=68.08  Aligned_cols=29  Identities=31%  Similarity=0.358  Sum_probs=25.3

Q ss_pred             cCCCCCCCCCCeEEEEEcCCCCCHHHHHH
Q psy16778         28 TLSPSGEGSPSTVFVIMGVSGSGKSTIGE   56 (433)
Q Consensus        28 ~~~~~~~~~~~~~I~l~G~~GsGKSTla~   56 (433)
                      ++++++++++++.++|||+||||||||+-
T Consensus        34 Lkni~v~iP~~~lvv~tG~SGSGKSSLaf   62 (972)
T 2r6f_A           34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAF   62 (972)
T ss_dssp             CCSEEEEEETTSEEEEEESTTSSHHHHHT
T ss_pred             CCceeeeccCCcEEEEECCCCCCHHHHHH
Confidence            44667788999999999999999999973

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.48  E-value=0.011  Score=57.15  Aligned_cols=40  Identities=28%  Similarity=0.322  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCC
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH   73 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~   73 (433)
                      -+.+|.++.|.|++||||||++..++...     .+.+++++...
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~  101 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL  101 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence            45688999999999999999999988654     45678877543

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.44  E-value=0.0016  Score=59.24  Aligned_cols=24  Identities=38%  Similarity=0.455  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+++|+|++||||||+.+.|+..+
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~   51 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTAL   51 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhccc
Confidence            678999999999999999999976

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.44  E-value=0.0043  Score=60.60  Aligned_cols=30  Identities=30%  Similarity=0.391  Sum_probs=24.4

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++..| +.+|+|++||||||+...++-.+
T Consensus        18 ~i~~~~g-~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           18 DIEFQSG-ITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             EEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEecCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence            3556667 78899999999999999988554

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.43  E-value=0.0076  Score=57.96  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=21.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Q psy16778         41 FVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        41 I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++|.|++|+||||+++.+++.+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999986

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=95.40  E-value=0.025  Score=53.99  Aligned_cols=145  Identities=11%  Similarity=0.104  Sum_probs=81.7

Q ss_pred             ccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCC---------CHHHHHHhCCCCcceEEEeeccCHHHH
Q psy16778        249 PVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTT---------SIEELAEKTPQTTKWFQLYIYRDREIT  319 (433)
Q Consensus       249 ~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~---------~~eeva~~~~~~~~w~qly~~~d~~~~  319 (433)
                      +++.||++||++.  +.    +....+.+.+.|.-++.+-..+.         .++.+ ....+.+.|+|++ ..+.+..
T Consensus         2 ~l~nri~~APM~~--~t----~~~~r~~~~~~G~gli~te~~~~~~~~~~~~~~~~~l-~~~~~~~~~~QL~-g~~~~~~   73 (318)
T 1vhn_A            2 SLEVKVGLAPMAG--YT----DSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIF-GSEPNEL   73 (318)
T ss_dssp             ---CEEEECCCTT--TC----SHHHHHHHHTTTCCCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEE-CSCHHHH
T ss_pred             ccCCCEEECCCCC--CC----cHHHHHHHHHHCcCEEEeCCEEEcccccCCHhHHHhh-hCcCCCeEEEEeC-CCCHHHH
Confidence            4577999999874  33    24566677767765544333211         12222 1224668999999 6777777


Q ss_pred             HHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccch---HHHHHhhCCCcchhhhhh--ccCCHHHHHHHHHHH
Q psy16778        320 KSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLN---IEELAEKTPQTTKWFQLY--IYRDREITKSLVQRA  394 (433)
Q Consensus       320 ~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s---~e~i~~~~~~~~~w~Qly--~~~~~~~~~~~~~ra  394 (433)
                      .+.+++|+++ |..|-++...|....|....-..+-.-+...   ++.+.+..+ -+....+-  +..+..  .++++++
T Consensus        74 ~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~-~pv~vKir~G~~~~~~--~~~a~~l  149 (318)
T 1vhn_A           74 SEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVS-GKFSVKTRLGWEKNEV--EEIYRIL  149 (318)
T ss_dssp             HHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCS-SEEEEEEESCSSSCCH--HHHHHHH
T ss_pred             HHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhC-CCEEEEecCCCChHHH--HHHHHHH
Confidence            7888889888 9999999987765444322111110001111   222223332 12222221  111222  2889999


Q ss_pred             HHcCCcEEEEe
Q psy16778        395 EKAGYKALVLT  405 (433)
Q Consensus       395 ~~~G~~aivlT  405 (433)
                      +++|+++|.|+
T Consensus       150 ~~~G~d~i~v~  160 (318)
T 1vhn_A          150 VEEGVDEVFIH  160 (318)
T ss_dssp             HHTTCCEEEEE
T ss_pred             HHhCCCEEEEc
Confidence            99999999986

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.37  E-value=0.011  Score=58.98  Aligned_cols=38  Identities=29%  Similarity=0.513  Sum_probs=31.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH   73 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~   73 (433)
                      .++.+|+|+|++|+||||++..|+..+     .+.+++.|...
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r  139 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR  139 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence            345799999999999999999999876     46678888653

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=95.34  E-value=0.13  Score=48.35  Aligned_cols=111  Identities=12%  Similarity=0.128  Sum_probs=57.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeE-EeCC-CCCccccccccccCCCCCCcCChhHHHH---------------
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKF-IDGD-HLHPQSNIDKMSAKQPLNDEDRRPWLNN---------------   98 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~-id~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------   98 (433)
                      ....-|+|+||   ||+|+.+.|.+.+.-.| ...- ..+.+....  ..|..+-.-.....++.               
T Consensus        98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE--~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~g  172 (292)
T 3tvt_A           98 NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYE--VDGRDYHFVSSREQMERDIQNHLFIEAGQYND  172 (292)
T ss_dssp             SSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CBTTTBEECSCHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCc--cCCccccccCCHHHHHHHHhcCceEEEEEEcc
Confidence            45567888888   59999999998774322 2111 111111000  11222111111111211               


Q ss_pred             -----HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcC-HHHHHHHHHHhh
Q psy16778         99 -----INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAE-FGVILSRLQKRA  154 (433)
Q Consensus        99 -----~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~-~e~l~~Rl~~R~  154 (433)
                           ....+...+.+|..+|++....   ....++.... .++|||..| .+++.+|+..|.
T Consensus       173 n~YGT~~~~V~~~~~~gk~viLdid~q---g~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~  232 (292)
T 3tvt_A          173 NLYGTSVASVREVAEKGKHCILDVSGN---AIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMT  232 (292)
T ss_dssp             EEEEEEHHHHHHHHHHTCEEEECCCTH---HHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSC
T ss_pred             ceeEEehHHHHHHHHcCCcEEEeccch---hhhhcccccccceEEEEECCCHHHHHHHHhCCC
Confidence                 1234556667788899987642   2223343333 578999875 677777665553

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.33  E-value=0.009  Score=61.23  Aligned_cols=30  Identities=17%  Similarity=0.341  Sum_probs=26.9

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+.+|.+++|+|++||||||+++.++...
T Consensus       276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~  305 (525)
T 1tf7_A          276 GGFFKDSIILATGATGTGKTLLVSRFVENA  305 (525)
T ss_dssp             SSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999999865

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=95.32  E-value=0.011  Score=58.21  Aligned_cols=28  Identities=21%  Similarity=0.233  Sum_probs=25.7

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ...++..++|+|+||+||||+.+.|.+.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            5678899999999999999999999983

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.27  E-value=0.011  Score=50.25  Aligned_cols=23  Identities=30%  Similarity=0.378  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|.+|+||||+.+.|.+.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999863

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.21  E-value=0.013  Score=49.42  Aligned_cols=25  Identities=32%  Similarity=0.567  Sum_probs=21.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +.+.+|+|++||||||+...|.-.+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3588999999999999999987655

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.20  E-value=0.011  Score=56.50  Aligned_cols=28  Identities=21%  Similarity=0.281  Sum_probs=25.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ...+..++|.|+||+|||++++.+++.+
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4577899999999999999999999988

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.20  E-value=0.01  Score=58.55  Aligned_cols=28  Identities=25%  Similarity=0.378  Sum_probs=24.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      .-+.+|.++.|+|+|||||||++..|+-
T Consensus       173 GGI~~Gei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          173 GGVETGSITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence            4467889999999999999999997763

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.19  E-value=0.018  Score=51.26  Aligned_cols=26  Identities=35%  Similarity=0.474  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +...|+|+|.+||||||+...|+..+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999999875

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=95.18  E-value=0.085  Score=56.14  Aligned_cols=154  Identities=13%  Similarity=0.154  Sum_probs=75.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC--CeEEeCCCCCccccccccccCCCCC-CcCC-----------------hhH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLG--VKFIDGDHLHPQSNIDKMSAKQPLN-DEDR-----------------RPW   95 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg--~~~id~D~~~~~~~~~~~~~~~~~~-~~~~-----------------~~~   95 (433)
                      ..+..|+|+||+   |+|+.+.|.+.+.  +.+.-....+.......-...+-|- ....                 -.+
T Consensus       529 ~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~  605 (721)
T 2xkx_A          529 HYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHL  605 (721)
T ss_pred             CCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCcc
Confidence            456789999993   9999999988763  3332222222111000001112221 1000                 001


Q ss_pred             HHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcC-HHHHHHHHHHhhCCCCCHHhHHHHHhhc---
Q psy16778         96 LNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAE-FGVILSRLQKRAEHFMPADLLESQFQTL---  170 (433)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~-~e~l~~Rl~~R~~~~~~~~~l~~~~~~~---  170 (433)
                      +-.-.+.+...+.+|+.||++...   .....++.... .++|||..+ .++|.+ +..|...    +.++.+++.-   
T Consensus       606 YGt~~~~v~~~~~~g~~~ildi~~---~~~~~l~~~~~~p~~ifi~pps~~~L~~-l~~R~t~----~~~~~rl~~a~~~  677 (721)
T 2xkx_A          606 YGTSVQSVREVAEQGKHCILDVSA---NAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRITE----EQARKAFDRATKL  677 (721)
T ss_pred             ceeeHHHHHHHHHCCCcEEEeCCH---HHHHHHHhcccCCEEEEEeCCcHHHHHH-HhccCCH----HHHHHHHHHHHHH
Confidence            111233355666788899998763   22233332111 478999976 555554 7777532    2222222211   


Q ss_pred             cCCCCCCCCCeEEEccCCCHHHHHHHHhcCCCC
Q psy16778        171 EEPDPLVEPDVRTVSVNEPLEGIVSKSAIMPPT  203 (433)
Q Consensus       171 ~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~~  203 (433)
                      +..+  ....+++|.++ +.++..+++...+..
T Consensus       678 e~~~--~~~fd~vi~Nd-~l~~a~~~l~~~i~~  707 (721)
T 2xkx_A          678 EQEF--TECFSAIVEGD-SFEEIYHKVKRVIED  707 (721)
T ss_pred             HHhc--cccCcEEEECc-CHHHHHHHHHHHHHh
Confidence            1111  11234556664 677777777666543

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.17  E-value=0.012  Score=56.02  Aligned_cols=33  Identities=15%  Similarity=0.288  Sum_probs=27.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG   69 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~   69 (433)
                      .+..+++.|++|+||||+++.+++.++..++..
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i   79 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFV   79 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            335678888899999999999999998766543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.16  E-value=0.011  Score=50.94  Aligned_cols=25  Identities=32%  Similarity=0.369  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +...|+|+|.+|+||||+.+.|...
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4468999999999999999999863

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=95.15  E-value=0.049  Score=55.09  Aligned_cols=104  Identities=16%  Similarity=0.176  Sum_probs=63.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCc
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLT  112 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (433)
                      +.+.+|+|-|.-||||+|..+.|.+.+   |+.++....-...    ..  +..        ++   ......+-..|..
T Consensus       298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~----E~--~~~--------yl---~R~~~~lP~~G~i  360 (500)
T 3czp_A          298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEE----ER--AQP--------YL---WRFWRHIPARRQF  360 (500)
T ss_dssp             GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHH----HH--TSC--------TT---HHHHTTCCCTTCE
T ss_pred             CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChh----hh--cch--------HH---HHHHHhCCCCCeE
Confidence            467899999999999999999999988   6666654432211    00  101        11   1122223345655


Q ss_pred             EEEEcCcc------------c-HHHHHHH----------HhcCC-eEEEEEEcCHHHHHHHHHHhhCC
Q psy16778        113 GVLVCSAL------------R-RNYRDII----------RNNNR-VVFIYLKAEFGVILSRLQKRAEH  156 (433)
Q Consensus       113 ~Vi~~~~~------------~-~~~~~~l----------~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~  156 (433)
                      +|.+-+..            . .++...+          .+.+- ++++||+.|+++..+|+.+|...
T Consensus       361 ~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~  428 (500)
T 3czp_A          361 TIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKT  428 (500)
T ss_dssp             EEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHS
T ss_pred             EEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcC
Confidence            55553321            1 2222222          22222 68999999999999999998653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.15  E-value=0.013  Score=51.41  Aligned_cols=24  Identities=21%  Similarity=0.311  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ...|+|+|.+|+||||+...+...
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            358999999999999999998874

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.12  E-value=0.0073  Score=57.79  Aligned_cols=30  Identities=37%  Similarity=0.374  Sum_probs=25.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      +++..+ +.+|+|++||||||+...|.-.+|
T Consensus        20 l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg   49 (322)
T 1e69_A           20 IGFSDR-VTAIVGPNGSGKSNIIDAIKWVFG   49 (322)
T ss_dssp             EECCSS-EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             EecCCC-cEEEECCCCCcHHHHHHHHHHHhC
Confidence            445666 999999999999999999987554

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.11  E-value=0.012  Score=54.20  Aligned_cols=27  Identities=26%  Similarity=0.348  Sum_probs=23.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      .+..|+|+|++|+|||++++.++...+
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            346789999999999999999998763

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.10  E-value=0.013  Score=58.74  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=23.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +..++|.|++|+||||+++.++..+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999999977

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=95.08  E-value=0.012  Score=57.07  Aligned_cols=48  Identities=17%  Similarity=0.097  Sum_probs=30.5

Q ss_pred             ccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778          4 SNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ++.++...+|.++.       ...+.+.+++..   .|+|+|.+||||||+...|.+.
T Consensus        10 ~l~~~~~~~~~~~~-------~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           10 KIQRACTALGDHGD-------SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             HTTTTTTSCSSCCS-------SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred             HHHHHHHhhCcccc-------ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence            35566666665321       123333334443   9999999999999999999873

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.06  E-value=0.014  Score=56.00  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      ..++|+|++|+||||+++.+++.++
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4499999999999999999999864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.04  E-value=0.016  Score=55.29  Aligned_cols=33  Identities=18%  Similarity=0.274  Sum_probs=28.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      +..++|+|++|+||||+++.+++..++.+++..
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~   63 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCR   63 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence            379999999999999999999998886777654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=95.02  E-value=0.0059  Score=66.38  Aligned_cols=29  Identities=31%  Similarity=0.311  Sum_probs=26.8

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHH
Q psy16778         27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIG   55 (433)
Q Consensus        27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla   55 (433)
                      .++++++++..|.+++|+|++||||||+.
T Consensus       599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             TCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred             cccccceEEcCCcEEEEEccCCCChhhhH
Confidence            46788899999999999999999999997

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.01  E-value=0.033  Score=51.02  Aligned_cols=38  Identities=32%  Similarity=0.570  Sum_probs=30.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCC
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDH   71 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~   71 (433)
                      ...+..+++++|..|+||||++..|+..+    .+..+|.|.
T Consensus        10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~   51 (262)
T 1yrb_A           10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT   51 (262)
T ss_dssp             TTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred             CCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            35667899999999999999999999654    445677775

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.00  E-value=0.016  Score=62.05  Aligned_cols=35  Identities=26%  Similarity=0.480  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      ..+.-|+|.||||+|||.+++.+|..++.+++..+
T Consensus       509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~  543 (806)
T 3cf2_A          509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK  543 (806)
T ss_dssp             CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHhCCceEEec
Confidence            34556899999999999999999999999998654

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=94.99  E-value=0.041  Score=54.01  Aligned_cols=70  Identities=19%  Similarity=0.200  Sum_probs=50.8

Q ss_pred             hhhcceeecccc-cCCCCCCceeeeCC-CccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHH
Q psy16778        222 ALKVLRIRPRVM-RDLSKRTLVTDALG-HPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAE  299 (433)
Q Consensus       222 a~~~~~l~pr~l-~~~~~~d~~~~~~g-~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~  299 (433)
                      -|+++-|+|.-- ...+++|++|.+-+ ..+..||+-||+++  +    .+..+|.|.+++|..-++..  ..+.|++++
T Consensus        11 t~ddvll~P~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~M~~--V----s~~~lA~Ava~aGGlGvi~~--~~~~e~~~~   82 (400)
T 3ffs_A           11 TFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDT--V----TEHLMAVGMARLGGIGIIHK--NMDMESQVN   82 (400)
T ss_dssp             CGGGEEECCCCBCSCGGGCCCCEESSSSCEESSSEEECSCTT--T----CSSHHHHHHHTTTCEEEECS--SSCHHHHHH
T ss_pred             CceeEEEecCCCccCHHHccCccchhcccCCCCCEEeCCCCC--c----CcHHHHHHHHHCCCEEEeCC--CCCHHHHHH
Confidence            467888888532 22356899998864 57899999999873  4    34467888888999888875  567777764

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=94.98  E-value=0.018  Score=55.59  Aligned_cols=29  Identities=17%  Similarity=0.278  Sum_probs=26.0

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .-+..|.++.|.|++||||||++..++..
T Consensus       117 GGl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          117 GGIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34678899999999999999999999985

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=94.98  E-value=0.0078  Score=58.58  Aligned_cols=28  Identities=25%  Similarity=0.182  Sum_probs=23.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      .+++.|.|-|+-||||||+++.|++.+.
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            5667899999999999999999999873

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=94.97  E-value=0.016  Score=50.76  Aligned_cols=25  Identities=20%  Similarity=0.347  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ....|+|+|.+|+||||+...|...
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999998864

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=94.97  E-value=0.0068  Score=58.12  Aligned_cols=27  Identities=26%  Similarity=0.183  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      .++.|.|-|+-||||||+++.|++.+.
T Consensus         3 ~~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            3 TLLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            457899999999999999999998773

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=94.94  E-value=0.012  Score=61.42  Aligned_cols=31  Identities=26%  Similarity=0.509  Sum_probs=26.9

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      +....+..++|+|++||||||+++.|++.+.
T Consensus        55 ~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           55 TAANQKRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             HHHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             ccccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            3446778999999999999999999999873

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.93  E-value=0.017  Score=54.95  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=22.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +..++|.|++|+|||+++..++..+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999999855

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.90  E-value=0.018  Score=61.73  Aligned_cols=27  Identities=33%  Similarity=0.556  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+..++|+|+||+||||+++.|++.+
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            345579999999999999999999987

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=94.88  E-value=0.026  Score=57.28  Aligned_cols=38  Identities=32%  Similarity=0.482  Sum_probs=29.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHLH   73 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~~   73 (433)
                      .++.+|+|+|.+||||||++..|+..+   |  +.+++.|...
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r  141 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR  141 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence            456799999999999999999999765   3  4567777653

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=94.87  E-value=0.077  Score=46.42  Aligned_cols=89  Identities=18%  Similarity=0.081  Sum_probs=47.4

Q ss_pred             eEEEEE-cCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCccccccccc-cCCCCCCcCChhHHHHHHHHHHHhhhCCC
Q psy16778         39 TVFVIM-GVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSNIDKMS-AKQPLNDEDRRPWLNNINRIIHQLNVDNL  111 (433)
Q Consensus        39 ~~I~l~-G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (433)
                      ++|+++ +..|+||||++..||..+     .+.++|.|.-.....+.... .+..+-....    ..+...+..+.....
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~l~~~yD   77 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAAS----EKDVYGIRKDLADYD   77 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCS----HHHHHTHHHHTTTSS
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCc----HHHHHHHHHhcCCCC
Confidence            456665 678899999999999877     35678888542211111100 0111100111    334444555444555


Q ss_pred             cEEEEcCccc-HHHHHHHHhc
Q psy16778        112 TGVLVCSALR-RNYRDIIRNN  131 (433)
Q Consensus       112 ~~Vi~~~~~~-~~~~~~l~~~  131 (433)
                      .+|||+++.. ......+...
T Consensus        78 ~viiD~~~~~~~~~~~~l~~a   98 (206)
T 4dzz_A           78 FAIVDGAGSLSVITSAAVMVS   98 (206)
T ss_dssp             EEEEECCSSSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            6778887633 4445555544

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=94.84  E-value=0.004  Score=61.78  Aligned_cols=32  Identities=16%  Similarity=0.091  Sum_probs=27.9

Q ss_pred             CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         30 SPSGEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        30 ~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +++++.+.+..|+|+|++|||||||.+.|+..
T Consensus       149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             EEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            45567788899999999999999999999874

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.82  E-value=0.019  Score=47.89  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|.+|+||||+.+.+.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999874

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=94.82  E-value=0.015  Score=50.36  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +...|+++|.+|+||||+...|...
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcC
Confidence            3468999999999999999999874

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=94.81  E-value=0.022  Score=47.99  Aligned_cols=27  Identities=30%  Similarity=0.423  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +.+...|+|+|.+|+||||+...+...
T Consensus         4 ~~~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            4 MTREMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            345678999999999999999999763

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.80  E-value=0.014  Score=50.47  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|.+|+||||+.+.+..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999886

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.80  E-value=0.021  Score=49.48  Aligned_cols=26  Identities=31%  Similarity=0.376  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .....|+|+|.+||||||+...|...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            45568999999999999999999874

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.80  E-value=0.025  Score=54.88  Aligned_cols=39  Identities=26%  Similarity=0.339  Sum_probs=32.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH   73 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~   73 (433)
                      +.++.++.|.|++||||||++..++...     .+.+++++...
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~  103 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL  103 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            4678899999999999999999988754     45678886543

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=94.73  E-value=0.033  Score=55.52  Aligned_cols=38  Identities=29%  Similarity=0.468  Sum_probs=30.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh------CCeEEeCCCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL------GVKFIDGDHLH   73 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l------g~~~id~D~~~   73 (433)
                      .++.+|+++|++|+||||++..|+..+      .+.+++.|...
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r  141 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR  141 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            456799999999999999999999655      34578888654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=94.71  E-value=0.019  Score=49.93  Aligned_cols=24  Identities=21%  Similarity=0.418  Sum_probs=20.9

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ...|+|+|.+|+||||+.+.+...
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            358999999999999999999873

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=94.64  E-value=0.023  Score=48.28  Aligned_cols=25  Identities=28%  Similarity=0.441  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ++...|+|+|.+|+||||+...|..
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4567899999999999999998875

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.63  E-value=0.022  Score=47.61  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=21.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ...|+|+|.+|+||||+...+...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            357999999999999999988763

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=94.62  E-value=0.01  Score=57.15  Aligned_cols=31  Identities=23%  Similarity=0.081  Sum_probs=26.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHH-HHHHHHhCC
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIG-ESLATRLGV   64 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla-~~La~~lg~   64 (433)
                      ...+++.|+|-|.-||||||++ +.|++.++.
T Consensus         8 ~~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~   39 (341)
T 1osn_A            8 VKMGVLRIYLDGAYGIGKTTAAEEFLHHFAIT   39 (341)
T ss_dssp             CCEEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             ccCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            3456789999999999999999 999998753

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=94.61  E-value=0.013  Score=61.24  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Q psy16778         41 FVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        41 I~l~G~~GsGKSTla~~La~~l   62 (433)
                      |+|+|++||||||+.+.|++.+
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC
T ss_pred             EEEECCCCChHHHHHHHHhCCC
Confidence            9999999999999999999853

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=94.59  E-value=0.025  Score=54.08  Aligned_cols=29  Identities=24%  Similarity=0.323  Sum_probs=25.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      -+..|.++.|.|++||||||++..++...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            45688999999999999999999998753

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=94.58  E-value=0.027  Score=50.30  Aligned_cols=28  Identities=29%  Similarity=0.080  Sum_probs=24.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+|++.+++|++||||||.+-.++.++
T Consensus        25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           25 NQNGWIEVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             CCSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            4568999999999999999998888877

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=94.58  E-value=0.021  Score=47.88  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ...|+|+|.+|+||||+.+.|...
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcC
Confidence            357999999999999999999873

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.57  E-value=0.021  Score=47.63  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+++|.+|+||||+...+...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999999864

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=94.56  E-value=0.024  Score=54.80  Aligned_cols=27  Identities=30%  Similarity=0.539  Sum_probs=24.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGV   64 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~   64 (433)
                      +..++|+|++|+||||+++.+++.++.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            347899999999999999999998864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.54  E-value=0.026  Score=50.35  Aligned_cols=26  Identities=38%  Similarity=0.515  Sum_probs=23.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +...|+|+|.+|+||||+...+...+
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999999865

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=94.53  E-value=0.018  Score=49.91  Aligned_cols=27  Identities=33%  Similarity=0.486  Sum_probs=21.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..+...|+|+|.+|+||||+...|...
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            355678999999999999999988754

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=94.51  E-value=0.026  Score=53.34  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..++|.|++|+||||+++.+++.+
T Consensus        47 ~~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           47 PHLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh
Confidence            469999999999999999999986

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=94.49  E-value=0.013  Score=56.30  Aligned_cols=26  Identities=35%  Similarity=0.399  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGV   64 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~   64 (433)
                      ..++|+|++|+|||++++.+++.++.
T Consensus        46 ~~vLl~G~~GtGKT~la~~la~~~~~   71 (350)
T 1g8p_A           46 GGVLVFGDRGTGKSTAVRALAALLPE   71 (350)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             ceEEEECCCCccHHHHHHHHHHhCcc
Confidence            34999999999999999999998864

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.44  E-value=0.012  Score=59.09  Aligned_cols=43  Identities=12%  Similarity=0.103  Sum_probs=33.3

Q ss_pred             eeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         20 VVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +.+.+...+++...-+.+|..++|.|+||+||||++..++...
T Consensus       185 ~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          185 GIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             SBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            3344445555555567899999999999999999999998754

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.42  E-value=0.028  Score=53.55  Aligned_cols=28  Identities=29%  Similarity=0.285  Sum_probs=24.9

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      -+..|.++.|.|++||||||++..++..
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999999864

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.41  E-value=0.018  Score=54.54  Aligned_cols=26  Identities=31%  Similarity=0.340  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .++..|+|+|.+|+|||||...|...
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence            34568999999999999999999863

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=94.40  E-value=0.095  Score=56.04  Aligned_cols=27  Identities=37%  Similarity=0.532  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+..++|+|++|+||||+++.+++.+
T Consensus       205 ~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          205 RRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999999987

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=94.40  E-value=0.026  Score=47.17  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ...|+|+|.+|+||||+.+.|...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999998864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.39  E-value=0.028  Score=47.92  Aligned_cols=26  Identities=23%  Similarity=0.188  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .+...|+|+|.+|+||||+...+...
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            45578999999999999999988864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.36  E-value=0.029  Score=49.68  Aligned_cols=27  Identities=30%  Similarity=0.336  Sum_probs=23.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .....|+|+|++|+||||+...|....
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345689999999999999999998753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.31  E-value=0.036  Score=47.98  Aligned_cols=26  Identities=35%  Similarity=0.358  Sum_probs=22.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .....|+|+|.+|+||||+...|...
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            34578999999999999999999874

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=94.30  E-value=0.025  Score=53.85  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=27.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL--GVKFIDG   69 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~   69 (433)
                      ...+..++|.|+||+||||++..++...  .+.|++.
T Consensus       120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            3456788999999999999999998754  3456666

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.27  E-value=0.026  Score=47.47  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ...|+|+|.+|+||||+...|..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            35799999999999999998876

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=94.26  E-value=0.02  Score=55.92  Aligned_cols=26  Identities=38%  Similarity=0.563  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH-HhCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT-RLGV   64 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~-~lg~   64 (433)
                      .+.+|+|++||||||+...|.= .+|-
T Consensus        26 gl~vi~G~NGaGKT~ileAI~~~l~g~   52 (371)
T 3auy_A           26 GIVAIIGENGSGKSSIFEAVFFALFGA   52 (371)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHCC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            6889999999999999999885 3444

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.24  E-value=0.028  Score=47.81  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=21.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ....|+|+|.+|+||||+...+...
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999988763

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.22  E-value=0.03  Score=46.88  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|.+|+||||+.+.+...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            57999999999999999999863

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=94.21  E-value=0.03  Score=52.71  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..++|+|++|+||||+++.+++.+
T Consensus        39 ~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           39 PHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CeEEEECcCCcCHHHHHHHHHHHh
Confidence            349999999999999999999986

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=94.17  E-value=0.029  Score=47.41  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ...|+|+|.+|+||||+.+.|..
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCccHHHHHHHHhc
Confidence            35799999999999999998875

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.17  E-value=0.03  Score=46.93  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|.+|+||||+...+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999988764

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=94.17  E-value=0.03  Score=59.96  Aligned_cols=33  Identities=27%  Similarity=0.585  Sum_probs=27.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEE--eCCCC
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFI--DGDHL   72 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~i--d~D~~   72 (433)
                      .++|+|++|+|||++++.+++.++..++  +...+
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~  524 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY  524 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence            7999999999999999999999987654  44444

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=94.16  E-value=0.03  Score=47.59  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=22.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +...|+|+|.+|+||||+.+.|...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999999874

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.15  E-value=0.031  Score=46.92  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ...|+|+|.+|+||||+.+.+...
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            357999999999999999999874

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=94.14  E-value=0.025  Score=57.39  Aligned_cols=27  Identities=22%  Similarity=0.330  Sum_probs=24.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      .+..|+|.|+||+|||++++.|+..++
T Consensus        40 ~~~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           40 SGESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             HTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             cCCeeEeecCchHHHHHHHHHHHHHHh
Confidence            346899999999999999999999774

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=94.14  E-value=0.031  Score=49.57  Aligned_cols=26  Identities=31%  Similarity=0.494  Sum_probs=22.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      +.+.+|+|++||||||+...|.-.++
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            35889999999999999999876653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.14  E-value=0.031  Score=48.43  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ....|+|+|.+|+||||+...|...
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           20 YLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcC
Confidence            3458999999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.13  E-value=0.032  Score=46.95  Aligned_cols=24  Identities=21%  Similarity=0.273  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ...|+|+|.+|+||||+.+.+...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            357999999999999999998864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.11  E-value=0.031  Score=47.48  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +...|+|+|.+|+||||+...|...
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhC
Confidence            3468999999999999999998754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=94.09  E-value=0.033  Score=47.29  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|.+|+||||+...+...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            57999999999999999999764

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=94.09  E-value=0.051  Score=49.11  Aligned_cols=29  Identities=31%  Similarity=0.241  Sum_probs=23.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +..++++.+++|++||||||.+-.++.++
T Consensus        15 ~~~~g~l~v~~G~MgsGKTT~lL~~~~r~   43 (234)
T 2orv_A           15 SKTRGQIQVILGPMFSGKSTELMRRVRRF   43 (234)
T ss_dssp             ---CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHHHH
Confidence            34678999999999999999887777766

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=94.06  E-value=0.031  Score=48.45  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .....|+|+|.+|+||||+...|...
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcC
Confidence            33468999999999999999998874

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.05  E-value=0.037  Score=54.23  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+..++|+|++||||||+++.+...+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999998765

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.04  E-value=0.032  Score=46.83  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|.+|+||||+...+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            57999999999999999998863

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.04  E-value=0.017  Score=55.02  Aligned_cols=41  Identities=12%  Similarity=0.000  Sum_probs=31.4

Q ss_pred             eeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         22 TLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +.+...++....-+.+|..++|.|.||+||||++..++...
T Consensus        52 ~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           52 PSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             CCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            33444444444456889999999999999999999998754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=94.03  E-value=0.032  Score=48.27  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +...|+|+|.+|+||||+...+...
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhC
Confidence            4468999999999999999888764

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=94.02  E-value=0.029  Score=61.01  Aligned_cols=26  Identities=38%  Similarity=0.572  Sum_probs=23.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+..++|+|++|+||||+++.+++.+
T Consensus       190 ~~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          190 TKNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence            34568999999999999999999987

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.01  E-value=0.028  Score=49.55  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ....|+|+|.+|+||||+.+.|...
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhC
Confidence            3468999999999999999988863

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=93.98  E-value=0.51  Score=46.15  Aligned_cols=100  Identities=12%  Similarity=0.032  Sum_probs=57.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      ..+..|+|+||+|   +|+.+.|.+.+.-.+..+  ....      +.|..-.....+.    -...+...+.+|+.||+
T Consensus       230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~--tr~p------R~gE~dG~~Y~Fv----~~~~V~~~~~~Gk~~iL  294 (391)
T 3tsz_A          230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQIA--KSEP------RDAGTDQRSSGII----RLHTIKQIIDQDKHALL  294 (391)
T ss_dssp             SSCCCEEEESTTH---HHHHHHHHHHCTTTEEEC--CCCC------CCSSSCCC--CCC----CHHHHHHHHTTTCEEEE
T ss_pred             CCCCEEEEECCCH---HHHHHHHHhhCccccccc--cCCC------CCcccCCccCCcC----cHHHHHHHHHcCCEEEE
Confidence            4677899999998   899999888764444443  2111      1111100000111    23445666778999999


Q ss_pred             EcCcccHHHHHHHHhcCC-eEEEEEEcC-HHHHHHHHHHhh
Q psy16778        116 VCSALRRNYRDIIRNNNR-VVFIYLKAE-FGVILSRLQKRA  154 (433)
Q Consensus       116 ~~~~~~~~~~~~l~~~~~-~~vv~L~~~-~e~l~~Rl~~R~  154 (433)
                      +...   .-...++.... .++|||..| .++|.+| .+|.
T Consensus       295 dId~---qg~~~l~~~~~~p~~IFI~PPS~~~L~~~-~~r~  331 (391)
T 3tsz_A          295 DVTP---NAVDRLNYAQWYPIVVFLNPDSKQGVKTM-RMRL  331 (391)
T ss_dssp             CCCH---HHHHHHHHTTCCCEEEEEECCCHHHHHHH-HHHH
T ss_pred             EeCH---HHHHHHHhCCCCCEEEEEeCcCHHHHHHH-HhcC
Confidence            8764   22233443222 578888886 5666654 5554

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=93.96  E-value=0.024  Score=49.57  Aligned_cols=26  Identities=27%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ......|+|+|.+|+|||||.+.+.+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHh
Confidence            34456899999999999999998753

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=93.96  E-value=0.03  Score=48.03  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ...|+|+|.+|+||||+...|...
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999999864

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=93.96  E-value=0.034  Score=48.03  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=21.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +...|+|+|.+|+||||+...|...
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcC
Confidence            3468999999999999999998763

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=93.96  E-value=0.03  Score=46.93  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|.+|+||||+.+.+..
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            4799999999999999998753

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=93.95  E-value=0.033  Score=46.81  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|.+|+||||+...+..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999998864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=93.91  E-value=0.036  Score=47.67  Aligned_cols=26  Identities=23%  Similarity=0.503  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .+...|+|+|.+|+||||+.+.+...
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC
Confidence            34578999999999999999988753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=93.91  E-value=0.033  Score=47.46  Aligned_cols=25  Identities=28%  Similarity=0.393  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +...|+|+|.+|+||||+...+...
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3468999999999999999999874

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=93.91  E-value=0.04  Score=47.57  Aligned_cols=26  Identities=19%  Similarity=0.189  Sum_probs=22.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .....|+|+|.+|+||||+...|...
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcC
Confidence            34468999999999999999998864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=93.90  E-value=0.036  Score=47.98  Aligned_cols=26  Identities=31%  Similarity=0.332  Sum_probs=22.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .....|+|+|.+|+||||+...|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34578999999999999999998764

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.89  E-value=0.034  Score=52.40  Aligned_cols=23  Identities=39%  Similarity=0.557  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++|.|++|+||||+++.+++.+
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            49999999999999999999986

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=93.87  E-value=0.039  Score=47.59  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .....|+|+|.+|+||||+...|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence            34468999999999999999988764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=93.86  E-value=0.038  Score=46.32  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|.+|+||||+...|...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            57999999999999999998863

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=93.84  E-value=0.035  Score=47.89  Aligned_cols=25  Identities=24%  Similarity=0.196  Sum_probs=21.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ...|+|+|.+|+||||+.+.+.+.+
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhc
Confidence            3589999999999999999887754

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=93.83  E-value=0.068  Score=48.19  Aligned_cols=33  Identities=18%  Similarity=0.026  Sum_probs=26.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CC--eEEeCCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL---GV--KFIDGDH   71 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l---g~--~~id~D~   71 (433)
                      .+|++.|++|+||||++-.++..+   |.  .+++.|.
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~   44 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET   44 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            479999999999999988888766   54  4567775

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.83  E-value=0.027  Score=48.15  Aligned_cols=24  Identities=33%  Similarity=0.524  Sum_probs=21.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLA   59 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La   59 (433)
                      .+...|+|+|.+|+||||+...+.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            456799999999999999998775

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=93.82  E-value=0.041  Score=48.02  Aligned_cols=27  Identities=22%  Similarity=0.262  Sum_probs=21.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..+...|+|+|.+|+||||+...|...
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            345679999999999999999999864

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=93.76  E-value=0.057  Score=51.03  Aligned_cols=36  Identities=22%  Similarity=0.347  Sum_probs=27.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHL   72 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~   72 (433)
                      .+..|+|+|++|+|||++++.++...   +  +..++...+
T Consensus        24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~   64 (304)
T 1ojl_A           24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL   64 (304)
T ss_dssp             TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred             CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence            45679999999999999999999854   2  334555444

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=93.76  E-value=0.039  Score=47.39  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ...|+|+|.+|+||||+...|...
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999999999999999863

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=93.75  E-value=0.037  Score=51.32  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=21.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ...|+|+|.+||||||+...|.+.
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            368999999999999999999764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.73  E-value=0.047  Score=47.46  Aligned_cols=26  Identities=31%  Similarity=0.463  Sum_probs=22.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .+...|+|+|.+|+||||+...|...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34568999999999999999999874

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.69  E-value=0.042  Score=46.55  Aligned_cols=25  Identities=24%  Similarity=0.394  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ....|+|+|.+|+||||+.+.|...
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            3468999999999999999999874

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=93.67  E-value=0.057  Score=52.51  Aligned_cols=39  Identities=23%  Similarity=0.371  Sum_probs=31.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH   73 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~   73 (433)
                      +..+.++.|.|++|+||||++..++...     .+.|++++.-.
T Consensus        71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~  114 (366)
T 1xp8_A           71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL  114 (366)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh
Confidence            4678899999999999999999888754     45688887643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=93.67  E-value=0.043  Score=47.40  Aligned_cols=25  Identities=32%  Similarity=0.331  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +...|+|+|.+|+||||+...+...
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3458999999999999999877763

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=93.66  E-value=0.2  Score=46.89  Aligned_cols=37  Identities=24%  Similarity=0.364  Sum_probs=28.6

Q ss_pred             CCCeEEEEEc-CCCCCHHHHHHHHHHHh-----CCeEEeCCCC
Q psy16778         36 SPSTVFVIMG-VSGSGKSTIGESLATRL-----GVKFIDGDHL   72 (433)
Q Consensus        36 ~~~~~I~l~G-~~GsGKSTla~~La~~l-----g~~~id~D~~   72 (433)
                      .++.+|+|+| .+|.||||++..||..+     .+.+||.|.-
T Consensus        90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~  132 (286)
T 3la6_A           90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR  132 (286)
T ss_dssp             TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence            3456777776 57999999999999877     4567888854

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=93.66  E-value=0.044  Score=45.82  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .|+|+|.+|+||||+...+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=93.65  E-value=0.048  Score=46.61  Aligned_cols=25  Identities=28%  Similarity=0.527  Sum_probs=21.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ....|+|+|.+|+||||+...+...
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4468999999999999999998864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=93.63  E-value=0.042  Score=46.93  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=21.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ...|+|+|.+|+||||+.+.|...
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhC
Confidence            468999999999999999998864

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=93.62  E-value=0.039  Score=46.85  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ...|+|+|.+|+||||+...|..
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999998864

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=93.62  E-value=0.038  Score=48.49  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=22.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .....|+|+|.+|+||||+...+...
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhC
Confidence            34468999999999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	433
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	3e-28
d1tb3a1	349	c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus	2e-22
d1tb3a1	349	c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus	3e-07
d1kbia1	414	c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal	1e-20
d1goxa_	359	c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia	1e-19
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	5e-18
d1p0ka_	329	c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera	2e-17
d1p4ca_	353	c.1.4.1 (A:) Membrane-associated (S)-mandelate deh	3e-17
d1p4ca_	353	c.1.4.1 (A:) Membrane-associated (S)-mandelate deh	3e-05
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	2e-15
d1vcfa1	310	c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i	4e-15
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	2e-14
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	2e-11
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	4e-11
d1viaa_	161	c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact	8e-11
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	1e-10
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	1e-10
d1e6ca_	170	c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr	2e-09
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	3e-09
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	2e-08
d2iyva1	165	c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycoba	3e-08
d1x6va3	195	c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin	7e-07
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	2e-06
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	2e-05
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	6e-05
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	7e-05
d1q3ta_	223	c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae	1e-04
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	2e-04
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	2e-04
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	2e-04
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	3e-04
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	3e-04
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	7e-04
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	8e-04
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	8e-04
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	0.001
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	0.001
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	0.002
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	0.002
d1m7ga_	208	c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (A	0.004
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	0.004
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	0.004

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score =  107 bits (268), Expect = 3e-28
 Identities = 74/161 (45%), Positives = 109/161 (67%), Gaps = 2/161 (1%)

Query: 37  PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWL 96
              ++V+MGVSGSGKS +   +A +L   F+DGD LHP+ NI+KM++ +PLND+DR+PWL
Sbjct: 5   DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL 64

Query: 97  NNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNN-RVVFIYLKAEFGVILSRLQKRAE 155
             +N     +   N   ++VCSAL+++YRD++R  N  + FIYLK +F VI SRL+ R  
Sbjct: 65  QALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKG 124

Query: 156 HFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSK 196
           HF    +L +QF+TL+EP    E DV  V +++PLEG+V+ 
Sbjct: 125 HFFKTQMLVTQFETLQEPGA-DETDVLVVDIDQPLEGVVAS 164

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.4 bits (236), Expect = 2e-22
 Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 28/203 (13%)

Query: 213 VCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLVTD 244
           VC+ DF+  A K L                            R+RPR +RD+SK    T 
Sbjct: 3   VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTT 62

Query: 245 ALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQT 304
             G  +  PI +SP A   +A  +GE   A A  E    Y++S+ ++ S+E++    P+ 
Sbjct: 63  IQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEG 122

Query: 305 TKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEE 364
            +WFQLY+  D +  K +VQRAE  G+KALV+T+DT V G R  D RN+ N+ +++ +++
Sbjct: 123 FRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKD 182

Query: 365 LAEKTPQTTKWFQLYIYRDREIT 387
           L     +         +      
Sbjct: 183 LRALKEEKPTQSVPVSFPKASFC 205

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.9 bits (118), Expect = 3e-07
 Identities = 28/62 (45%), Positives = 41/62 (66%)

Query: 367 EKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPS 426
              P+  +WFQLY+  D +  K +VQRAE  G+KALV+T+DT V G R  D RN+ N+ +
Sbjct: 117 AAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEA 176

Query: 427 HL 428
           ++
Sbjct: 177 NI 178

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.1 bits (225), Expect = 1e-20
 Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 33/187 (17%)

Query: 204 RAPPNYSDFVCVDDFEQFALKVL----------------------------RIRPRVMRD 235
              P   + + + DFE  A + L                              +P+++ D
Sbjct: 17  SLLPPLDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVD 76

Query: 236 LSKRTLVTDALGHPVQIPIGVSPAAMQKLAH---EEGEIGNAAAVGEVGGIYILSTISTT 292
           + K  + TD LG  V +P  VS  A+ KL +    E ++      G      ++ST+++ 
Sbjct: 77  VRKVDISTDMLGSHVDVPFYVSATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASC 136

Query: 293 SIEELAE--KTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADI 350
           S EE+ E   + +  +W+QLY+  DR+IT  LV+  EK G KAL +TVD    G R  D+
Sbjct: 137 SPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDM 196

Query: 351 RNKFNMP 357
           + KF+  
Sbjct: 197 KLKFSNT 203

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 359

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 87.3 bits (215), Expect = 1e-19
 Identities = 72/211 (34%), Positives = 107/211 (50%), Gaps = 32/211 (15%)

Query: 211 DFVCVDDFEQFALKVL----------------------------RIRPRVMRDLSKRTLV 242
           +   V+++E  A + L                              RPR++ D++   + 
Sbjct: 2   EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMT 61

Query: 243 TDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTP 302
           T  LG  + +PI ++P AMQK+AH EGE   A A    G I  LS+ +T+S+EE+A   P
Sbjct: 62  TTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP 121

Query: 303 QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHL-- 360
              ++FQLY+Y+DR +   LV+RAE+AG+KA+ LTVDT   G R ADI+N+F +P  L  
Sbjct: 122 G-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTL 180

Query: 361 -NIEELAEKTPQTTKWFQLYIYRDREITKSL 390
            N E +            L  Y   +I +SL
Sbjct: 181 KNFEGIDLGKMDKANDSGLSSYVAGQIDRSL 211

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 79.2 bits (194), Expect = 5e-18
 Identities = 23/163 (14%), Positives = 50/163 (30%), Gaps = 5/163 (3%)

Query: 39  TVFVIMGVSGSGKSTIGESLATRLGVKF--IDGDHLHPQSNIDKMSAKQPLNDEDRRPWL 96
            + ++ G  GSGKSTI E+LA   GV       D L       ++    P + +  R  +
Sbjct: 5   NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIM 64

Query: 97  NNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH 156
                +  +   +    +L                  + +I L+      + R   R   
Sbjct: 65  QIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGD 124

Query: 157 FM-PADLLESQFQTLEEPDPLVEPDVRTV--SVNEPLEGIVSK 196
            +    ++        +        +       ++ L+  ++ 
Sbjct: 125 SLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAINA 167

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

 Score = 80.6 bits (198), Expect = 2e-17
 Identities = 16/174 (9%), Positives = 41/174 (23%), Gaps = 10/174 (5%)

Query: 226 LRIRPRVM--RDLSKRTLVTDALGHPVQIPIGVSP-AAMQKLAHEEGEIGNAAAVGEVGG 282
           +      +    L +  + T         PI ++           E     A A  + G 
Sbjct: 8   ITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGI 67

Query: 283 IYILSTISTTSIEELAEKTPQTTK-----WFQLYIYRDREITKSLVQRAEKAGYKALVLT 337
              + +  +   +     + +  +                      +  E  G  AL + 
Sbjct: 68  PLAVGSQMSALKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIH 127

Query: 338 VDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLV 391
           ++           R+         IE++  +        ++     +     L 
Sbjct: 128 LNVIQEIVMPEGDRSFSGALKR--IEQICSRVSVPVIVKEVGFGMSKASAGKLY 179

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 80.4 bits (197), Expect = 3e-17
 Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 2/141 (1%)

Query: 222 ALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVG 281
             +  R +P+ + D+S+R+L  + LG    +P+ + P  +      +G++  A A  + G
Sbjct: 40  VFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAG 99

Query: 282 GIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTN 341
             ++LST S  SIE+LA +       +       REI + +V +A   GY  LVLT D  
Sbjct: 100 IPFVLSTASNMSIEDLARQCD--GDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVA 157

Query: 342 VFGTRYADIRNKFNMPSHLNI 362
           V G R  D+ N+F +P  L +
Sbjct: 158 VNGYRERDLHNRFKIPPFLTL 178

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 348 ADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVD 407
           A I    +  S+++IE+LA +       +       REI + +V +A   GY  LVLT D
Sbjct: 98  AGIPFVLSTASNMSIEDLARQCD--GDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTD 155

Query: 408 TNVFGTRYADIRNKFNMPSHL 428
             V G R  D+ N+F +P  L
Sbjct: 156 VAVNGYRERDLHNRFKIPPFL 176

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 71.3 bits (173), Expect = 2e-15
 Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 9/143 (6%)

Query: 40  VFVIMGVSGSGKSTIGESLATR-LGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN 98
           + + +G  GSGKST       +  G   I+ D         +   +     +        
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGM 63

Query: 99  INRIIHQLNVDNLTG---VLVCSALRRNYRDIIR-----NNNRVVFIYLKAEFGVILSRL 150
                  +     +    ++  + L    R            +V        +  ++ R 
Sbjct: 64  QFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRN 123

Query: 151 QKRAEHFMPADLLESQFQTLEEP 173
            KR    +P D+L S ++++ E 
Sbjct: 124 SKRGTKAVPIDVLRSMYKSMREY 146

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

 Score = 73.4 bits (179), Expect = 4e-15
 Identities = 33/215 (15%), Positives = 62/215 (28%), Gaps = 21/215 (9%)

Query: 222 ALKVLRIRPRVMR--DLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGE 279
            L+  R+R + +    LS+  L T  LG  ++ P  +      +   E   +  A A   
Sbjct: 5   GLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEA 64

Query: 280 VGGIYILSTISTTSIEE-------LAEKTPQTTKWFQLYIYRDREITKSLVQRAEK-AGY 331
           +G   +L +               + +  P+      L + + R   +  + R  +    
Sbjct: 65  LGVGMMLGSGRILLERPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEA 124

Query: 332 KALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLV 391
            AL   V+      +  D    F        E L    P   K     + R+        
Sbjct: 125 DALAFHVNPLQEAVQRGD--TDFRGLVERLAELLPLPFPVMVKEVGHGLSREA------A 176

Query: 392 QRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPS 426
                    A+ +       GT +A +        
Sbjct: 177 LALRDLPLAAVDV---AGAGGTSWARVEEWVRFGE 208

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 68.9 bits (167), Expect = 2e-14
 Identities = 24/181 (13%), Positives = 57/181 (31%), Gaps = 22/181 (12%)

Query: 38  STVFVIMGVSGSGKSTIGESLATRLGVKFIDGD----------HLHPQSNIDKMSAKQPL 87
           + + ++ G S +GKS I   L + L   ++              +       +  A   +
Sbjct: 3   TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62

Query: 88  NDEDRRPWLNN-----INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAE 142
           +       L       +  +        +  V +  A  +        +  V+++ ++ +
Sbjct: 63  SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCD 122

Query: 143 FGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSK--SAIM 200
             V   R   R +    A +   Q   + E    VE DV   + ++          + ++
Sbjct: 123 GAVAEGRETARGDR--VAGMAAKQAYVVHEG---VEYDVEVDTTHKESIECAWAIAAHVV 177

Query: 201 P 201
           P
Sbjct: 178 P 178

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 60.1 bits (144), Expect = 2e-11
 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 7/160 (4%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR 101
            ++G  G+GKSTIG  LA +L ++F D D    +     +     L  E+          
Sbjct: 6   FLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVI 65

Query: 102 IIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQK---RAEHFM 158
                    +      S   R  R+ +      V +YL+      L+R Q+   R    +
Sbjct: 66  NELTEKQGIVLATGGGSVKSRETRNRLSARG--VVVYLETTIEKQLARTQRDKKRPLLHV 123

Query: 159 PADLLESQFQTLEEPDPLVE--PDVRTVSVNEPLEGIVSK 196
                E       E +PL E   DV   + ++  + + ++
Sbjct: 124 ETPPREVLEALANERNPLYEEIADVTIRTDDQSAKVVANQ 163

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 59.3 bits (142), Expect = 4e-11
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 9/142 (6%)

Query: 40  VFVIMGVSGSGKSTIGESLATRLGVK-FIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN 98
           +++I G +G GKST  + LA +L    +I+GD ++    +         +DE       N
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKN 61

Query: 99  INRIIHQLNVDNLTGVLVCSALRRNYRDIIR------NNNRVVFIYLKAEFGVILSRLQK 152
           I  +     +     VL   A       + +      ++  + FI L      +L R   
Sbjct: 62  ITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDAL 121

Query: 153 RAEHFMPADLLESQFQTLEEPD 174
           R +     +      +  E   
Sbjct: 122 RKKDEQMGERCLELVEEFESKG 143

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

 Score = 58.4 bits (140), Expect = 8e-11
 Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 9/158 (5%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR 101
           V +G  GSGKST+  +LA  L + F+D D L  Q    K+     + ++ R  +     +
Sbjct: 4   VFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKV---SEIFEQKRENFFREQEQ 60

Query: 102 IIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPAD 161
            +           +       N  ++ +       IYLKA+F  +  RL K      P  
Sbjct: 61  KMADFFSSCEKACIATGGGFVNVSNLEKAG---FCIYLKADFEYLKKRLDKDEISKRPLF 117

Query: 162 LLESQFQTL-EEPDPLVE--PDVRTVSVNEPLEGIVSK 196
             E + + L  E     E   +      N+ ++ ++S+
Sbjct: 118 YDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSE 155

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 58.1 bits (139), Expect = 1e-10
 Identities = 24/159 (15%), Positives = 49/159 (30%), Gaps = 9/159 (5%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDH-LHPQSNIDKMSAKQPLNDEDRRPWLNNIN 100
           +I G  G+GK+++ E +A  L          L  +++       +           + + 
Sbjct: 9   LITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLL 68

Query: 101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPA 160
             +  + V           +  +  ++       + + L     V+  RL KR       
Sbjct: 69  DFMEPIMVSR-----GNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKR 123

Query: 161 DLLESQFQ---TLEEPDPLVEPDVRTVSVNEPLEGIVSK 196
                        EE     E D+  V  N+ LE + + 
Sbjct: 124 AENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAAT 162

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 1e-10
 Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 9/120 (7%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR 101
           ++ G  G GK+T+G+ LA++ G+K+I+   L  +  +          DE+    + + +R
Sbjct: 8   LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDG------YDEEYDCPILDEDR 61

Query: 102 IIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPAD 161
           ++ +L+     G      +  +  D        +   L+ +  V+  RL+ R  +     
Sbjct: 62  VVDELDNQMREG---GVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLT 118

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 54.6 bits (130), Expect = 2e-09
 Identities = 29/161 (18%), Positives = 52/161 (32%), Gaps = 9/161 (5%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR 101
            ++G  G G +T+G  LA  LG +F+D D     ++   ++                   
Sbjct: 6   FMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRR-RESEA 64

Query: 102 IIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH----- 156
           +      + +        L    R  +R +     +YL A    +  RLQ   +      
Sbjct: 65  LQAVATPNRVVATGGGMVLLEQNRQFMRAHGT--VVYLFAPAEELALRLQASLQAHQRPT 122

Query: 157 FMPADLLESQFQTLEEPDPLV-EPDVRTVSVNEPLEGIVSK 196
                + E     L E + L  +     V   +P   IV +
Sbjct: 123 LTGRPIAEEMEAVLREREALYQDVAHYVVDATQPPAAIVCE 163

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (128), Expect = 3e-09
 Identities = 22/154 (14%), Positives = 36/154 (23%), Gaps = 23/154 (14%)

Query: 29  LSPSGE--GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQP 86
           L  S         V V +G  G+GKST  +      G   ++ D L              
Sbjct: 3   LPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSS----- 57

Query: 87  LNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVI 146
                +         +I   N D         +  R  +               A     
Sbjct: 58  ----CQAALRQGKRVVIDNTNPD-------VPSRARYIQCAKDAGVPCRCFNFCATIEQA 106

Query: 147 LSRLQKRAEH-----FMPADLLESQFQTLEEPDP 175
               + R         +   ++ S  +  E P  
Sbjct: 107 RHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTL 140

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 23/162 (14%), Positives = 45/162 (27%), Gaps = 5/162 (3%)

Query: 40  VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND-EDRRPWLNN 98
              + G   SGK  I  +L   L  +      L     +    + +     EDR   +  
Sbjct: 8   TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQR 67

Query: 99  INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM 158
           I  +  +L       +    A     R   R+       +        L   ++  +  +
Sbjct: 68  IAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGI 127

Query: 159 PADLLESQFQTLEEPDPLVE----PDVRTVSVNEPLEGIVSK 196
            A     + +     D   E     D+      + +  IV +
Sbjct: 128 YAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRSIVHE 169

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 50.8 bits (120), Expect = 3e-08
 Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 11/163 (6%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR 101
           V++G+ GSGKSTIG  LA  LGV  +D D    Q     ++     + E     +     
Sbjct: 5   VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVV 64

Query: 102 IIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH--FMP 159
                + D +  +   +      R  +  +     +YL+      + R            
Sbjct: 65  RAALADHDGVLSLGGGAVTSPGVRAALAGHT---VVYLEISAAEGVRRTGGNTVRPLLAG 121

Query: 160 ADLLESQFQTLEEPDPLVEP------DVRTVSVNEPLEGIVSK 196
            D  E     + +  PL         D    +    +  I+S+
Sbjct: 122 PDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSR 164

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 7e-07
 Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 5/162 (3%)

Query: 40  VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNI 99
              + G+SG+GK+T+  +L   L    I    L   +    ++     + EDR   +  I
Sbjct: 21  TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRI 80

Query: 100 NRIIH----QLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAE 155
             +         V   + +   +  R N R I    +   F         +  +   +  
Sbjct: 81  AEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGL 140

Query: 156 HFMPADLLESQFQTLEEP-DPLVEPDVRTVSVNEPLEGIVSK 196
           +          F  ++   +    P++   + +  +   V +
Sbjct: 141 YKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQ 182

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 26/171 (15%), Positives = 62/171 (36%), Gaps = 16/171 (9%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI----------DKMSAKQPLNDED 91
           +++G  G+GK T    LA +LG+  I    L  ++              + A   +  + 
Sbjct: 4   LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 63

Query: 92  RRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFI--YLKAEFGVILSR 149
               +++        N   L G        +   +++      +      +    V+L R
Sbjct: 64  TNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLER 123

Query: 150 LQKRAEHFMPADLLESQFQTLEEP-DPLVE---PDVRTVSVNEPLEGIVSK 196
           L+ R       D++ ++ +   +   PL+E     ++TV     ++ + ++
Sbjct: 124 LKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFAR 174

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 9/63 (14%), Positives = 21/63 (33%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR 101
           V++G  G+GK T   +L  R     +    +                    +  L + + 
Sbjct: 6   VLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDI 65

Query: 102 IIH 104
           +++
Sbjct: 66  MVN 68

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 41.4 bits (96), Expect = 6e-05
 Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 16/170 (9%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK----------MSAKQPLNDED 91
           V+MG+ G+GK T  E +    G+  I    +   +  +           M     + DE 
Sbjct: 4   VLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEV 63

Query: 92  RRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQ 151
               +          N   L G     A       ++ +  R +   +  +    +   +
Sbjct: 64  TIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMER 123

Query: 152 KRAEHFMPADLLESQFQTLEEPDPLVE-----PDVRTVSVNEPLEGIVSK 196
             A+    A +       +++  PLV+       +R ++  + +E + + 
Sbjct: 124 LTADD-NEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFAD 172

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 25/189 (13%), Positives = 57/189 (30%), Gaps = 25/189 (13%)

Query: 31  PSGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDH-LHPQSNIDKMSAKQPLND 89
           P+      +V  ++G  G+GK T  E L        +     L  +         + + +
Sbjct: 1   PAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKN 60

Query: 90  EDRRPWLNNINRIIHQL------------NVDNLTGVLVCSALRRNYRDIIRNNNRVVFI 137
             +   +      +  L            +   + G         ++   I  +  ++F 
Sbjct: 61  CIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFF 120

Query: 138 YLKAEFGVILSRLQKRAEHFMPADLLESQFQT-----LEEPDPLVE-----PDVRTVSVN 187
               +  ++L RL +R +    +D      +       E   P++E       V  V  +
Sbjct: 121 DCPED--IMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCD 178

Query: 188 EPLEGIVSK 196
             +E +   
Sbjct: 179 RSVEDVYKD 187

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 15/134 (11%)

Query: 43  IMGVSGSGKSTIGESLATRLGVKFID-GD--------HLHPQSNIDKMSAKQPLNDEDRR 93
           I G + SGKST+ + +A   G  ++D G          L  Q  ++++ A   L D+   
Sbjct: 8   IDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPI 67

Query: 94  PWLNNINRI-IHQLNVDNLTGVLVCSALRRNYRDI-----IRNNNRVVFIYLKAEFGVIL 147
            +  +     +  +   ++T  +  + +  +   I     +R     +   +  + G+++
Sbjct: 68  SFGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVM 127

Query: 148 SRLQKRAEHFMPAD 161
                       A+
Sbjct: 128 DGRDIGTVVLPQAE 141

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 1/95 (1%)

Query: 39  TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN 98
           T+ V++G+   GK+ I + L   L    +     +      +   K   + E   P    
Sbjct: 3   TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN-VGQYRRDMVKTYKSFEFFLPDNEE 61

Query: 99  INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR 133
             +I  Q  +  L  V    +    +  +    N 
Sbjct: 62  GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT 96

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 22/183 (12%), Positives = 49/183 (26%), Gaps = 20/183 (10%)

Query: 34  EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFID-GDHLHPQSNIDKMSAKQPLNDEDR 92
           E S   V  ++G  GSGK T   ++    G   +  GD L  +        +        
Sbjct: 2   EKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN 61

Query: 93  RP----WLNNINRIIHQLNVDNLTGVLVCSALRRNYRD-----IIRNNNRVVFIYLKAEF 143
                  +                 ++          +     +    +    ++     
Sbjct: 62  GEIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPE 121

Query: 144 GVILSRLQKRAEHFMPADLLESQFQT-----LEEPDPLVE-----PDVRTVSVNEPLEGI 193
            V+  RL KR E    +D      +        +   +++       V+ +  N  +  +
Sbjct: 122 EVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEV 181

Query: 194 VSK 196
            + 
Sbjct: 182 YND 184

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 11/72 (15%), Positives = 23/72 (31%)

Query: 36  SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPW 95
           +     +I G   SGK T  E + T+  +  I    L            +   +   +  
Sbjct: 1   ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQ 60

Query: 96  LNNINRIIHQLN 107
           L     +++ + 
Sbjct: 61  LVPDEIVVNMVK 72

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 12/67 (17%), Positives = 26/67 (38%)

Query: 38  STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN 97
           S +  ++G  GSGK T  E +  + G   +    L         +  + L++   +  L 
Sbjct: 8   SKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLV 67

Query: 98  NINRIIH 104
            +  ++ 
Sbjct: 68  PLETVLD 74

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 6/123 (4%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFID-GDHLHPQSNIDKMSAKQPLNDEDRRPWLNN-- 98
            IMG  GSGK T+   +     +K +  GD L                  D+   + +  
Sbjct: 10  AIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDV 69

Query: 99  -INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVF--IYLKAEFGVILSRLQKRAE 155
               ++H+L        L+    R   +    +    +   I L   F VI  RL  R E
Sbjct: 70  MTRLVLHELKNLTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTDRPE 129

Query: 156 HFM 158
             +
Sbjct: 130 TVV 132

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR 101
           +++G   +GK T  + +  + G+  I    +   +        +   D      L   + 
Sbjct: 4   ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT-DE 62

Query: 102 IIHQLNVDN 110
           ++  L  + 
Sbjct: 63  LVIALVKER 71

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 37.9 bits (87), Expect = 8e-04
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 18/171 (10%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFID-GDHLHPQSN---------IDKMSAKQPLNDED 91
           V+MG+ G+GK T  + +  + G   I  GD                   M     + DE 
Sbjct: 4   VLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEV 63

Query: 92  RRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQ 151
               +          N   L G             ++ +  R   I       V    L 
Sbjct: 64  TIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRK--IEHVLNIQVEKEELI 121

Query: 152 KRAEHFMPADLLESQFQT-LEEPDPLVE-----PDVRTVSVNEPLEGIVSK 196
            R       D + ++ +  + +  PL+        +  ++  + ++ +   
Sbjct: 122 ARLTADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKD 172

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 38.1 bits (87), Expect = 8e-04
 Identities = 21/153 (13%), Positives = 45/153 (29%), Gaps = 20/153 (13%)

Query: 40  VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWL--- 96
           + ++ G+ G GKST+   +   L  + I+   ++    +   + K     +         
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 97  --------NNINRIIHQLNVDNLTGVLVCSALR---------RNYRDIIRNNNRVVFIYL 139
                   +    I  +        + + +                 +I   N  V   L
Sbjct: 63  EKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLL 122

Query: 140 KAEFGVILSRLQKRAEHFMPADLLESQFQTLEE 172
           +A+  +ILSR ++           ES       
Sbjct: 123 EADPKIILSRQKRDTTRNRNDYSDESVILETIN 155

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 15/160 (9%)

Query: 40  VFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRP 94
           V  I+G SGSGKST    +   L     G   ++G +++     DK    +  +    R 
Sbjct: 30  VISIIGSSGSGKSTFLRCIN-FLEKPSEGAIIVNGQNINLVR--DKDGQLKVADKNQLRL 86

Query: 95  WLNNINRIIHQLN-VDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR 153
               +  +    N   ++T +            + +++ R   +   A+ G     + +R
Sbjct: 87  LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVG-----IDER 141

Query: 154 AEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGI 193
           A+   P  L   Q Q +     L   +   +  +EP   +
Sbjct: 142 AQGKYPVHLSGGQQQRVSIARALA-MEPDVLLFDEPTSAL 180

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 1/64 (1%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINR 101
           V++G  G+GK T    LA    V  +    +     +   S                 + 
Sbjct: 7   VLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRA-MVASGSELGKKLKATMDAGKLVSDE 65

Query: 102 IIHQ 105
           ++ +
Sbjct: 66  MVLE 69

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 40 VFVIMGVSGSGKSTIGESLATRLGVKFID 68
          V  I G SG+GK T+ +++A  L    +D
Sbjct: 5  VITIDGPSGAGKGTLCKAMAEALQWHLLD 33

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 17/161 (10%)

Query: 40  VFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNIDKMSAKQPLN----DED 91
            F I+G SG+GK+T    +A       G  + D   +     +      + +        
Sbjct: 33  RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92

Query: 92  RRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVI-LSRL 150
             P L     I   L    ++        +   R  +    +++ I+         LS  
Sbjct: 93  LYPNLTAFENIAFPLTNMKMS--------KEEIRKRVEEVAKILDIHHVLNHFPRELSGA 144

Query: 151 QKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLE 191
           Q++      A + +     L+EP   ++  +R  +     E
Sbjct: 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 208

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 29/176 (16%), Positives = 50/176 (28%), Gaps = 16/176 (9%)

Query: 35  GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRP 94
                   + G+S SGKST+   L  +L V+           +  +    + L       
Sbjct: 21  NQRGLTIWLTGLSASGKSTLAVELEHQL-VRDRRVHAYRLDGDNIRFGLNKDL-GFSEAD 78

Query: 95  WLNNINRIIHQL---NVDNLTGVLVCSALRRNYRDIIR-----------NNNRVVFIYLK 140
              NI RI          N   +    +  R  RD  R                V +Y+ 
Sbjct: 79  RNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVD 138

Query: 141 AEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSK 196
               V   R  K         +++         +    P+V   +   P++  V +
Sbjct: 139 VPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQ 194

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 17/145 (11%)

Query: 38  STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL-----------HPQSNIDKMSAKQP 86
           + V V+ GV G G +T  +     L  + ++   +                 D+   ++ 
Sbjct: 1   NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKM 60

Query: 87  LNDEDRRPWLNNINRIIHQLNVDNL---TGVLVCSA---LRRNYRDIIRNNNRVVFIYLK 140
             +  +R       +I        +   T   V +    L      ++   N  + I ++
Sbjct: 61  DPETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVE 120

Query: 141 AEFGVILSRLQKRAEHFMPADLLES 165
                IL R           D   +
Sbjct: 121 TTGDEILMRRMSDETRVRDLDTAST 145

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 42  VIMGVSGSGKSTIGESLATRLGVKFIDGD---HLHPQSNIDKMSAKQPLNDEDRRPWLNN 98
            I+G   SGKS +   LA               +  +   D+ + +     +        
Sbjct: 11  AILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRY 70

Query: 99  INRIIHQ 105
           I+  +  
Sbjct: 71  IDYAVRH 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	433
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	99.97
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	99.95
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	99.94
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	99.91
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.84
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.75
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.74
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.73
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	99.64
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.6
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	99.59
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.57
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.56
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.56
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.55
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.55
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.53
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.51
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.5
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.49
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.47
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.47
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.47
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.47
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.46
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.45
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.45
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.43
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.43
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.35
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.35
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	99.32
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.31
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.3
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.23
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.2
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.19
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	99.16
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.1
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.09
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.09
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.09
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.05
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.04
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.04
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.03
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	99.01
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.0
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.99
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.98
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.97
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.97
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.97
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	98.94
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.88
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.87
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.83
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.83
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.82
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.81
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	98.77
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.72
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.61
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.58
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.57
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.57
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.56
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.55
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.55
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	98.54
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	98.53
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.49
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.47
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.46
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	98.44
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.42
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	98.37
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.27
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.22
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.15
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.14
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	98.01
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.99
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.82
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.8
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	97.78
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.78
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.78
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.71
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.62
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	97.61
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	97.48
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.47
d1okkd2	207	GTPase domain of the signal recognition particle r	97.42
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.4
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.39
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.39
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.37
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.37
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.34
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.3
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.28
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.27
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.2
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.19
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.15
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	97.14
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.08
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.02
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.87
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.79
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.75
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.74
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.64
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.6
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.55
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.53
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.49
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.47
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.46
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.43
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.28
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.23
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.18
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.06
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.03
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.97
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.9
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.89
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.85
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.77
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	95.69
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.63
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.55
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.47
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.47
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.45
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.28
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.28
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.26
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.22
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.17
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.17
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.14
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	95.07
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.07
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.06
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.99
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.94
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.83
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.83
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.76
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.76
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.76
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.74
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.73
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.71
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.71
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.7
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.68
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.66
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	94.65
d2fh5b1	207	Signal recognition particle receptor beta-subunit	94.5
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.44
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.35
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.27
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.25
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.25
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.22
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.2
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	94.2
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.19
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.11
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.04
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	93.95
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.9
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	93.87
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.86
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	93.82
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	93.8
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.79
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.76
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.72
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	93.67
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	93.67
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.65
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	93.6
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	93.59
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.57
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.52
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.52
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.51
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.51
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	93.51
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.44
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	93.41
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.39
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.38
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	93.35
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.23
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.22
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.22
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	93.2
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.19
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	93.19
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.16
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.16
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.98
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	92.98
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.93
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	92.92
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.91
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	92.86
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.86
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	92.85
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	92.83
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	92.83
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	92.83
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.79
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	92.77
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	92.67
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.59
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.5
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.46
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	92.43
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	92.33
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	92.17
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	92.17
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.16
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.12
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.11
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	92.06
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.0
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.75
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	91.72
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	91.7
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	91.67
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	91.51
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	91.4
d1tuea_	205	Replication protein E1 helicase domain {Human papi	91.29
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.26
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	91.26
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	91.21
d1xpua3	289	Transcription termination factor Rho, ATPase domai	90.98
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	90.88
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	90.65
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	90.61
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.57
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	90.17
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	90.14
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	89.99
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	89.92
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	89.84
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.67
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	89.67
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.47
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	89.46
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.19
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.12
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	89.06
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	89.06
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	88.99
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	88.71
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	88.63
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	88.02
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	87.72
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	87.71
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	87.62
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.48
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	86.33
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	86.28
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	85.86
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	85.72
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.71
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	85.65
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	85.01
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.68
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	84.52
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	84.01
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	83.98
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	83.67
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	83.56
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	82.85
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	81.38
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	81.02
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	80.79
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	80.07

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=2.5e-32  Score=266.23  Aligned_cols=217  Identities=30%  Similarity=0.461  Sum_probs=188.2

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778        188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK  263 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~  263 (433)
                      .+++|+...++++||+ ..+.|++.+++++.    |+++|++|+|+||+|+|++++||+|+|||+++++||+|+|+++++
T Consensus         3 ~~i~d~~~~A~~~lp~-~~~~y~~~ga~de~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lG~~l~~P~~Iapmtgg~   81 (349)
T d1tb3a1           3 VCLADFKAHAQKQLSK-TSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHS   81 (349)
T ss_dssp             CSHHHHHHHHHHTSCH-HHHHHHHCCCTTCHHHHHHHHHHHHCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             ccHHHHHHHHHHHCCH-HHHHHHhccccccHHHHHHHHHHHhccEEcccccCCCCCCCceeECCcCccceEEEcchhccc
Confidence            3678999999999988 67888888888776    478999999999999999999999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778        264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  343 (433)
Q Consensus       264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~  343 (433)
                      +.|++++..+|++|.+.|++|++|+.++.++|+++++.+++..|||+|.+++++.+..++++++++|++++++|+|.+..
T Consensus        82 ~~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~v~~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~  161 (349)
T d1tb3a1          82 IAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVL  161 (349)
T ss_dssp             GTCTTTHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHSTTCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSC
T ss_pred             ccccchhhHHHHhhhhcccceeecccccccchhhhhhccCCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhh
Confidence            99999999999999999999999999999999999988888999999999999999999999999999999999999999


Q ss_pred             CccccccccccCCCccchHHHHHhh------------------CCCcchhh----hhhccCCHHHHHHHHHHHHHcCCcE
Q psy16778        344 GTRYADIRNKFNMPSHLNIEELAEK------------------TPQTTKWF----QLYIYRDREITKSLVQRAEKAGYKA  401 (433)
Q Consensus       344 G~r~~~~~~~~~~~~~~s~e~i~~~------------------~~~~~~w~----Qly~~~~~~~~~~~~~ra~~~G~~a  401 (433)
                      |+|+++.++++..|.......+...                  +++...|+    .+++..++.++.+.+.+|.++|+++
T Consensus       162 ~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~Kgi~~~~da~~a~~~G~d~  241 (349)
T d1tb3a1         162 GNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPKASFCWNDLSLLQSITRLPIILKGILTKEDAELAMKHNVQG  241 (349)
T ss_dssp             CCCHHHHHTTCCCCC----CCSCCCCC-------------CCCCHHHHHHHHTTCCSCEEEEEECSHHHHHHHHHTTCSE
T ss_pred             cchhhhhhccccCCcccchhhhhhhhhccccccccccccCCCCCHHHHHHHHHhcCCCcccchhhhhHHHHHHHHhhccc
Confidence            9999999999987654332222100                  01111222    2456667889999999999999999


Q ss_pred             EEEe
Q psy16778        402 LVLT  405 (433)
Q Consensus       402 ivlT  405 (433)
                      |+|+
T Consensus       242 i~vs  245 (349)
T d1tb3a1         242 IVVS  245 (349)
T ss_dssp             EEEC
T ss_pred             eeee
Confidence            9997

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.95  E-value=3.8e-28  Score=237.79  Aligned_cols=216  Identities=34%  Similarity=0.558  Sum_probs=184.8

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCcccccchhhhh----HHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778        188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDFE----QFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK  263 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~~----~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~  263 (433)
                      .++.|+...+++++|+ ..+.|.+.+++++.+    +.+|++|+|+||+|+|++++||+|+|||+++++||+|+|+++++
T Consensus         4 ~~i~d~~~~A~~~lp~-~~~~y~~gga~~~~t~~~N~~~Fd~i~l~pr~L~d~~~iDlst~~lG~~~~~P~~IspMtgg~   82 (359)
T d1goxa_           4 TNVNEYEAIAKQKLPK-MVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQK   82 (359)
T ss_dssp             CSTTHHHHHHHHHSCH-HHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             cCHHHHHHHHHHhCCH-HHHHHHhccCCccHHHHHHHHHHHhcceecccccCCCCCCCceeECCcccCCceeeccccccc
Confidence            5778889999999988 568888888887764    88999999999999999999999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778        264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  343 (433)
Q Consensus       264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~  343 (433)
                      ..|++||.+++++|.+.|++|++|+.++.++|++++..+ ++.|||+|...+......++++++++|++++++|+|.++.
T Consensus        83 ~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~~  161 (359)
T d1goxa_          83 MAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL  161 (359)
T ss_dssp             GTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCC-CCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred             cCCCchHHHhhhhHHhhCCcccccccccccchhhHHhcC-CCcccccccchhHHHHHHHHHHHHHhhcccccccccchhh
Confidence            999999999999999999999999999999999998764 5789999999999999999999999999999999999999


Q ss_pred             CccccccccccCCCccchHHH--------------------HHhhCCCcchhhh---------hhccCCHHHHHHHHHHH
Q psy16778        344 GTRYADIRNKFNMPSHLNIEE--------------------LAEKTPQTTKWFQ---------LYIYRDREITKSLVQRA  394 (433)
Q Consensus       344 G~r~~~~~~~~~~~~~~s~e~--------------------i~~~~~~~~~w~Q---------ly~~~~~~~~~~~~~ra  394 (433)
                      +.|+++.++++..|...+..+                    +......+..|-.         .++..++.++.+.+.+|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~~~~da~~a  241 (359)
T d1goxa_         162 GRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVITAEDARLA  241 (359)
T ss_dssp             CCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCSHHHHHHH
T ss_pred             hhhhhhccccccCCcccchhhhhhhccccCcccccccHHHHHHhhcCCCCCHHHHHHHHhhcccceeeecccchHHHHHH
Confidence            999999988876554332211                    1122211222221         34556778888999999


Q ss_pred             HHcCCcEEEEe
Q psy16778        395 EKAGYKALVLT  405 (433)
Q Consensus       395 ~~~G~~aivlT  405 (433)
                      ..+|+++++++
T Consensus       242 ~~~g~~~~~vs  252 (359)
T d1goxa_         242 VQHGAAGIIVS  252 (359)
T ss_dssp             HHTTCSEEEEC
T ss_pred             HHccccceecc
Confidence            99999999875

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.7e-28  Score=242.74  Aligned_cols=219  Identities=27%  Similarity=0.352  Sum_probs=174.7

Q ss_pred             cCCCHHHHHHHHhcCCCCCCCCCcccccchhhh----hHHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhh
Q psy16778        186 VNEPLEGIVSKSAIMPPTRAPPNYSDFVCVDDF----EQFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAM  261 (433)
Q Consensus       186 ~~~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~----~~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~  261 (433)
                      .-.+++|+...+++++|+ ..+.|++.++.++.    |+.+|++|+|+||+|+|++++||+|+|||+++++||+|+|+|+
T Consensus        24 ~~~~~~d~~~~A~~~lp~-~~~~y~~~ga~~e~t~~~N~~aFd~i~l~Pr~L~dvs~iDlst~~lG~~l~~P~~Isp~g~  102 (414)
T d1kbia1          24 NIINLYDFEYLASQTLTK-QAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVSATAL  102 (414)
T ss_dssp             GCCSHHHHHHHHHHHSCH-HHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSC
T ss_pred             hcCCHHHHHHHHHHhCCH-HHHHHHhccccchHHHHHHHHHHHhceeeccccCCCcCCCCceeECCccCCCCEEEChhhh
Confidence            347999999999999988 67889888888775    5899999999999999999999999999999999999999999


Q ss_pred             ccccCcc-chHH--HHHHHHhcCCceEEecCCCCCHHHHHHhCCC--CcceEEEeeccCHHHHHHHHHHHHHcCCcEEEE
Q psy16778        262 QKLAHEE-GEIG--NAAAVGEVGGIYILSTISTTSIEELAEKTPQ--TTKWFQLYIYRDREITKSLVQRAEKAGYKALVL  336 (433)
Q Consensus       262 ~~~~~~~-~e~~--~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~--~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~l  336 (433)
                      ++++||. ++.+  .++++...|++|++|+.++.++|+++.+.+.  ...|||+|.+.|.+.+..++++++++|++++++
T Consensus       103 ~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~~~~~~~~~a~~~~~~~~~q~y~~~~~~~~~~l~~ra~~ag~~al~~  182 (414)
T d1kbia1         103 CKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFV  182 (414)
T ss_dssp             GGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEE
T ss_pred             hcccCcchhHHHHHhhHHHhhhccccccccccccchHHHHHHhcCCccchhhcccccccHHHHHHHHHHHHHcCCccccc
Confidence            9999984 3444  4555555899999999999999999987653  458999999999999999999999999999999


Q ss_pred             eeeecccCccccccccccCCCccc--------------hHHHHHhhCC-----Ccchhhh----hhccCCHHHHHHHHHH
Q psy16778        337 TVDTNVFGTRYADIRNKFNMPSHL--------------NIEELAEKTP-----QTTKWFQ----LYIYRDREITKSLVQR  393 (433)
Q Consensus       337 tvD~~~~G~r~~~~~~~~~~~~~~--------------s~e~i~~~~~-----~~~~w~Q----ly~~~~~~~~~~~~~r  393 (433)
                      |+|++.+|+|++|.+..+..+...              ....+.....     +...|..    ..+..++.++.+.+..
T Consensus       183 tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~i~~i~~~~~~~~i~kgi~~~~da~~  262 (414)
T d1kbia1         183 TVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKGVQRTEDVIK  262 (414)
T ss_dssp             ECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEEECSHHHHHH
T ss_pred             ccccccccccHHHHHhcccccccchhhhhcccccccccHHHHHHHhcccCCCHHHHHHHhccCCceEEeeccchhHHHHH
Confidence            999999999999877665422100              0000000000     1111221    1233456667888999


Q ss_pred             HHHcCCcEEEEe
Q psy16778        394 AEKAGYKALVLT  405 (433)
Q Consensus       394 a~~~G~~aivlT  405 (433)
                      +..+|+++++++
T Consensus       263 ~~~~G~~~i~vs  274 (414)
T d1kbia1         263 AAEIGVSGVVLS  274 (414)
T ss_dssp             HHHTTCSEEEEC
T ss_pred             HHhcCCcceeec
Confidence            999999999886

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=4e-25  Score=215.76  Aligned_cols=215  Identities=26%  Similarity=0.446  Sum_probs=178.4

Q ss_pred             CCHHHHHHHHhcCCCCCCCCCcccccchhhhh----HHhhhcceeecccccCCCCCCceeeeCCCccCCceeechhhhcc
Q psy16778        188 EPLEGIVSKSAIMPPTRAPPNYSDFVCVDDFE----QFALKVLRIRPRVMRDLSKRTLVTDALGHPVQIPIGVSPAAMQK  263 (433)
Q Consensus       188 ~~~ee~~~~i~~~l~~~~~~~~~d~~~~~~~~----~~a~~~~~l~pr~l~~~~~~d~~~~~~g~~~~~P~~~~p~~~~~  263 (433)
                      .++.|+...+++++|+ ..+.|++.+++++.+    +.+|++|+|+||+|+|++++||+|+|||+++++||+|+|+++.+
T Consensus         3 ~~~~d~~~~a~~~~p~-~~~~y~~~ga~~~~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lGk~ls~Pi~Iapmtgg~   81 (353)
T d1p4ca_           3 FNVEDYRKLAQKRLPK-MVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNG   81 (353)
T ss_dssp             SSHHHHHHHHHHHSCH-HHHHHHHCCSTTCHHHHHHHHGGGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCSCGG
T ss_pred             CCHHHHHHHHHHhCCH-HHHHHHhccccchHHHHHHHHHHHhCcEEcccccCCCCCCCceEECCcCccCceeeccccccc
Confidence            4789999999999988 678888888888864    88999999999999999999999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeeccc
Q psy16778        264 LAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVF  343 (433)
Q Consensus       264 ~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~  343 (433)
                      ..|+.++.++|++|.+.|++|++++.++.+++++++... ...|+|++ ..+..++..+.++++.+|++++++|+|.+..
T Consensus        82 ~~~~~~n~~lA~aA~~~~i~~~~gs~s~~~~~e~~~~~~-~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~l~~~vd~~~~  159 (353)
T d1p4ca_          82 ALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCD-GDLWFQLY-VIHREIAQGMVLKALHTGYTTLVLTTDVAVN  159 (353)
T ss_dssp             GTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCC-SCEEEEEC-CSSHHHHHHHHHHHHHTTCCEEEEECSCSSC
T ss_pred             cccchhhHHHHHHHHHhhccccccccccccchhHHHhcC-Cceeeeec-cccHHHHHHhHHHHHHcCCcceeeecccccc
Confidence            999999999999999999999999999999999998864 45666655 5688889999999999999999999999999


Q ss_pred             CccccccccccCCCccchHHH--------------------HHhhCCCcchhhh---------hhccCCHHHHHHHHHHH
Q psy16778        344 GTRYADIRNKFNMPSHLNIEE--------------------LAEKTPQTTKWFQ---------LYIYRDREITKSLVQRA  394 (433)
Q Consensus       344 G~r~~~~~~~~~~~~~~s~e~--------------------i~~~~~~~~~w~Q---------ly~~~~~~~~~~~~~ra  394 (433)
                      |.++.+.++++..|.......                    +.........|--         .++..++..+.+.+++|
T Consensus       160 g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~i~~kgv~~~~~~~~a  239 (353)
T d1p4ca_         160 GYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKGLLSAEDADRC  239 (353)
T ss_dssp             CCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECCHHHHHHH
T ss_pred             CcchhhhhhhhcccchhhhhhhhhhccccccccccchhHHHHHhccCCCCCHHHHHHHHhccccchhhhcchhhhhHHHH
Confidence            999998887765432221111                    1111111222221         23455677788999999


Q ss_pred             HHcCCcEEEEe
Q psy16778        395 EKAGYKALVLT  405 (433)
Q Consensus       395 ~~~G~~aivlT  405 (433)
                      .+.|+++++++
T Consensus       240 ~~~g~~~~~~s  250 (353)
T d1p4ca_         240 IAEGADGVILS  250 (353)
T ss_dssp             HHTTCSEEEEC
T ss_pred             HhcCCchhhhc
Confidence            99999999985

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.4e-20  Score=163.24  Aligned_cols=166  Identities=45%  Similarity=0.840  Sum_probs=134.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEE
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGV  114 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  114 (433)
                      .+++.+|+|+|+|||||||+++.|++++|+.+++.|.+...........+..+.......+...+...+......+..++
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSL   82 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHhhhhccCcceehhhhHHHHHHHHHHHHHHHhccCceE
Confidence            56789999999999999999999999999999999998755333333334444444444555566666666777777788


Q ss_pred             EEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHH
Q psy16778        115 LVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGI  193 (433)
Q Consensus       115 i~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~  193 (433)
                      +++++....+++.+++... ..+|||++|++++.+|+.+|.++....+.+..+++.++++.. .+.+.++||++.+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~e~~~~-~e~~~~~id~~~~~e~v  161 (171)
T d1knqa_          83 IVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGA-DETDVLVVDIDQPLEGV  161 (171)
T ss_dssp             EECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHHCCCCCT-TCTTEEEEECSSCHHHH
T ss_pred             eeccchHHHHHHHHHHhCCCceEEeecCCHHHHHHHHHhCcCCCccHHHHHhhHHHhhCCCc-ccCCEEEEeCCCCHHHH
Confidence            8888888888888888766 789999999999999999998777788899999999888765 55678999999999999


Q ss_pred             HHHHhcCC
Q psy16778        194 VSKSAIMP  201 (433)
Q Consensus       194 ~~~i~~~l  201 (433)
                      +++|.+.+
T Consensus       162 ~~~i~~~l  169 (171)
T d1knqa_         162 VASTIEVI  169 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.75  E-value=6.4e-19  Score=153.20  Aligned_cols=153  Identities=21%  Similarity=0.263  Sum_probs=103.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      ..|+|+|+|||||||+|+.||++||++|+|+|.+++..      .|...++   ..++..++..+..+.........++.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~------~g~~i~ei~~~~g~~~~~~~~~~~l~~~~~~~~~~~   76 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT------SGMTVADVVAAEGWPGFRRRESEALQAVATPNRVVA   76 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH------HCSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEE
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhh------hhhhhhhhhcccchHHHHHHHHHHHHhhccccceec
Confidence            45788999999999999999999999999999986432      1322221   12334444444433333333333433


Q ss_pred             EcCc--ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC----C----HHhHHHHHhhccCCCCCCCCCeEEEc
Q psy16778        116 VCSA--LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM----P----ADLLESQFQTLEEPDPLVEPDVRTVS  185 (433)
Q Consensus       116 ~~~~--~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~----~----~~~l~~~~~~~~~~~~~~~~~~~~Id  185 (433)
                      .+++  .....++.+++.+  .+|||++|++++.+|+..|.....    .    .+.++..+..+.+.|  ++.++++|+
T Consensus        77 ~~~~~~~~~~~~~~l~~~~--~~v~L~~~~e~l~~Rl~~~~~~~~r~~~~~~~~~~~~~~~~~er~~lY--~~~a~~~Id  152 (170)
T d1e6ca_          77 TGGGMVLLEQNRQFMRAHG--TVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALY--QDVAHYVVD  152 (170)
T ss_dssp             CCTTGGGSHHHHHHHHHHS--EEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHH--HHHCSEEEE
T ss_pred             ccccchhhhHHHHhhhccc--eeEEEecCchhHHHHHhhccccccCCCCCCCCHHHHHHHHHHHHHHHH--HHcCCEEEc
Confidence            3333  5566778888775  899999999999999987753221    1    223444455555554  344779999


Q ss_pred             cCCCHHHHHHHHhcCC
Q psy16778        186 VNEPLEGIVSKSAIMP  201 (433)
Q Consensus       186 ~~~~~ee~~~~i~~~l  201 (433)
                      ++.++++++++|.+.|
T Consensus       153 ~~~~~~eiv~~Ii~~L  168 (170)
T d1e6ca_         153 ATQPPAAIVCELMQTM  168 (170)
T ss_dssp             TTSCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHc
Confidence            9999999999998765

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.74  E-value=1.6e-19  Score=155.79  Aligned_cols=151  Identities=19%  Similarity=0.239  Sum_probs=106.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCC---CcCChhHHHHHHHHHHHhhhCCCcEEEE
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLN---DEDRRPWLNNINRIIHQLNVDNLTGVLV  116 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Vi~  116 (433)
                      .|+|+|+|||||||+|+.||+++|++|+|+|.+++..      .|....   ...+..+++..+..+...+.....+|+.
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~------~g~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~~~v~~   75 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQK------FNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIA   75 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH------HTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhH------HhhhhhhHHHhhhhccchhhhhhhchhhhhccccccc
Confidence            4899999999999999999999999999999886432      122222   1234566677777776666666677777


Q ss_pred             cCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCC--C--CCHHhHHHHHhhccCCCCCCCCCeEEEccC-CCHH
Q psy16778        117 CSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEH--F--MPADLLESQFQTLEEPDPLVEPDVRTVSVN-EPLE  191 (433)
Q Consensus       117 ~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~--~--~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~-~~~e  191 (433)
                      +++... ..+.+.+.  ..+|||++|++++.+|+..|...  +  .....++..+..+.+.|  ++.++++||++ .+++
T Consensus        76 ~~g~~~-~~~~l~~~--~~vI~L~~s~~~l~~Rl~~~~~~~Rp~~~~~~~~~~l~~~r~~~Y--~~~ad~~Idt~~~s~e  150 (161)
T d1viaa_          76 TGGGFV-NVSNLEKA--GFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKY--EQKANFILNIENKNID  150 (161)
T ss_dssp             CCTTGG-GSTTGGGG--CEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHH--HHHCSEEEECTTCCHH
T ss_pred             cccchh-hHHHHHhC--CeEEEeccchHHHHHHHccccccccccccCchHHHHHHHHHHHHH--HhhCCEEEECCCCCHH
Confidence            766433 23344444  48999999999999999776532  2  23334555555555544  34478999988 8999


Q ss_pred             HHHHHHhcCC
Q psy16778        192 GIVSKSAIMP  201 (433)
Q Consensus       192 e~~~~i~~~l  201 (433)
                      +++++|.+.+
T Consensus       151 ei~~~I~~~i  160 (161)
T d1viaa_         151 ELLSEIKKVI  160 (161)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987643

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=5e-19  Score=153.15  Aligned_cols=150  Identities=22%  Similarity=0.255  Sum_probs=102.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCChhHHHHHHH-HHHHhhhCCCcEEE
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDRRPWLNNINR-IIHQLNVDNLTGVL  115 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~Vi  115 (433)
                      .|+|+|+|||||||+|+.||+++|++|+|+|.++++.      .|....+   ..+...++..+. .+........ +|+
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~------~g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~-~vi   75 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQR------TGRSIADIFATDGEQEFRRIEEDVVRAALADHD-GVL   75 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH------HSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC-SEE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhh------hhhhhhhhhhhhhHHHHHHHHhhhhhhcccccc-ccc
Confidence            4677799999999999999999999999999876432      1322211   223444555443 4445454443 445


Q ss_pred             EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC-----CHHhHHHHHhhccCCCCCCCCCeEEEccC
Q psy16778        116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM-----PADLLESQFQTLEEPDPLVEPDVRTVSVN  187 (433)
Q Consensus       116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~Id~~  187 (433)
                      .+++   .....+..+...   .+|||+++++++.+|+..+..++.     ..+.+...+..+.+.|  ++.++++||++
T Consensus        76 ~~gg~~~~~~~~~~~l~~~---~~I~L~~~~~~~~~R~~~~~~Rpll~~~~~~e~~~~l~~eR~~~Y--~~~ad~~Idt~  150 (165)
T d2iyva1          76 SLGGGAVTSPGVRAALAGH---TVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLY--RRVATMRVDTN  150 (165)
T ss_dssp             ECCTTGGGSHHHHHHHTTS---CEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHH--HHHCSEEEECS
T ss_pred             ccccccccccccccccccc---ceeeeeccchhhhhcccccccchhccCccHHHHHHHHHHHHHHHH--HhhCCEEEECC
Confidence            5443   445556666544   689999999999999976654432     1344566666655554  45578999998


Q ss_pred             -CCHHHHHHHHhcCC
Q psy16778        188 -EPLEGIVSKSAIMP  201 (433)
Q Consensus       188 -~~~ee~~~~i~~~l  201 (433)
                       .++++++++|.+.|
T Consensus       151 ~~s~~ei~~~Ii~~L  165 (165)
T d2iyva1         151 RRNPGAVVRHILSRL  165 (165)
T ss_dssp             SSCHHHHHHHHHTTS
T ss_pred             CCCHHHHHHHHHhcC
Confidence             89999999998764

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.64  E-value=2.6e-17  Score=158.15  Aligned_cols=175  Identities=10%  Similarity=0.004  Sum_probs=128.9

Q ss_pred             hhhcceeecccc--cCCCCCCceeeeCCCccCCceeechh-hhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHH
Q psy16778        222 ALKVLRIRPRVM--RDLSKRTLVTDALGHPVQIPIGVSPA-AMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELA  298 (433)
Q Consensus       222 a~~~~~l~pr~l--~~~~~~d~~~~~~g~~~~~P~~~~p~-~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva  298 (433)
                      +|++|.|.|++|  .|++++|++|+|||+++++||++||+ ++....|+.++.++|++|.+.|+++++++.++...|+.+
T Consensus         4 gfddi~lvP~~l~~~d~~~vdlst~i~G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~~~~~   83 (329)
T d1p0ka_           4 GLDDITFVHVSLPDLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDPSE   83 (329)
T ss_dssp             SGGGEEECCCSCCCCCGGGCBCCEEETTEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTCHHH
T ss_pred             CcceEEEECCCCCCCChhhCCCCEEECCEEcCCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeecccccccchhHHH
Confidence            589999999999  67889999999999999999999996 677778999999999999999999999999998888876


Q ss_pred             HhC-----CCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHh---hCC
Q psy16778        299 EKT-----PQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAE---KTP  370 (433)
Q Consensus       299 ~~~-----~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~---~~~  370 (433)
                      ...     ...+.|+|++............+..+..|+.++.+++|.+....+....+.     ....++++..   ...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~i~~~~~  158 (329)
T d1p0ka_          84 RLSYEIVRKENPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRS-----FSGALKRIEQICSRVS  158 (329)
T ss_dssp             HHHHHHHHHHCSSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC-------------CTTHHHHHHHHHHHCS
T ss_pred             HhhhhhHhhhCCcceEEEeeccchhHHHHHHHHHHcCCCEEEecccccchhhhcccccc-----ccchHHHHHHHHHHcC
Confidence            431     123467777777666666667777788999999999998876666544332     1223344433   222


Q ss_pred             CcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778        371 QTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       371 ~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT  405 (433)
                      .+....-.    -...+.+.++++.++|+++|+|+
T Consensus       159 ~~vivk~v----~~~~~~~~a~~~~~~GaD~i~v~  189 (329)
T d1p0ka_         159 VPVIVKEV----GFGMSKASAGKLYEAGAAAVDIG  189 (329)
T ss_dssp             SCEEEEEE----SSCCCHHHHHHHHHHTCSEEEEE
T ss_pred             CCcEEEec----CCcchHHHHHHHHhcCCCEEEEc
Confidence            22111000    11256788899999999999996

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.60  E-value=4.1e-16  Score=135.00  Aligned_cols=163  Identities=15%  Similarity=0.200  Sum_probs=100.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE--eCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcE
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFI--DGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTG  113 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~i--d~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (433)
                      ..|.+|+|+|+|||||||+++.|++++|.+++  ++|.+.......................+......+......+..+
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   81 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFV   81 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHhcCCCe
Confidence            35789999999999999999999999998765  5565532211000000111111111222233334444555556555


Q ss_pred             EEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCC-CHHhHHHHHhhccCCCCCCCCCeEEEccC-CCH
Q psy16778        114 VLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFM-PADLLESQFQTLEEPDPLVEPDVRTVSVN-EPL  190 (433)
Q Consensus       114 Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~Id~~-~~~  190 (433)
                      |++. .........+..... ...+||+++++++.+|+.+|..... ..+.+....+.+...   ...+.++||++ .++
T Consensus        82 i~~~-~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~---~~~~~~~idt~~~~~  157 (176)
T d1zp6a1          82 ILDG-VVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADL---GAFEHHVLPVSGKDT  157 (176)
T ss_dssp             EECS-CCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCC---GGGGGGEEECTTCCT
T ss_pred             Eecc-cccHHHHHHHHhcccccccccCCCCHHHHHHHHHhCCCccccchhhHHHHHHHHhhc---ccccCEEEECCCCCH
Confidence            5554 444445555555544 7789999999999999999975433 244555555555443   23356788887 889


Q ss_pred             HHHHHHHhcCCC
Q psy16778        191 EGIVSKSAIMPP  202 (433)
Q Consensus       191 ee~~~~i~~~l~  202 (433)
                      +++++.|.+.+.
T Consensus       158 ee~~~~I~~~l~  169 (176)
T d1zp6a1         158 DQALQSAINALQ  169 (176)
T ss_dssp             TTTTTTTHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            988887776553

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=5.1e-17  Score=154.65  Aligned_cols=178  Identities=16%  Similarity=0.094  Sum_probs=123.3

Q ss_pred             hHHhhhcceeeccccc--CCCCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHH
Q psy16778        219 EQFALKVLRIRPRVMR--DLSKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEE  296 (433)
Q Consensus       219 ~~~a~~~~~l~pr~l~--~~~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~ee  296 (433)
                      |+.+|++++|+||+|+  +++++|++|+|||+++++||++||+++....++.++.++|++|.+.|+++++++.+....|+
T Consensus         2 n~~~f~~~~~~p~~L~~~d~~~vDlst~~~G~~l~~Pi~iapm~~~~~~~~~~~~~lA~aA~~~g~~~~~~~~~~~~~~~   81 (310)
T d1vcfa1           2 TTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILLERP   81 (310)
T ss_dssp             CCCSGGGEEECCCTTCCCCGGGCCCCEEETTEEESSSEEECCCC---CCHHHHHHHHHHHHHHHTCEEEEEECHHHHHCT
T ss_pred             CcccccceEEEcccCCCCCcccCcCCeEECCEEcCCCEEEcChhhhhhhhhHHHHHHHHHHHHcCCCeEeccchhcchhh
Confidence            5679999999999995  67899999999999999999999998877778888899999999999999999887655554


Q ss_pred             H-------HHhCCCCcceEEEeeccCHHHHHHHHHHH-HHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHhh
Q psy16778        297 L-------AEKTPQTTKWFQLYIYRDREITKSLVQRA-EKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEK  368 (433)
Q Consensus       297 v-------a~~~~~~~~w~qly~~~d~~~~~~~~~~A-~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~  368 (433)
                      .       .+..++...|++++.....+.......++ +..++.++..+++.+.......+      .......+.....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  155 (310)
T d1vcfa1          82 EALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGD------TDFRGLVERLAEL  155 (310)
T ss_dssp             TTHHHHCCTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHTTSC------CCCTTHHHHHHHH
T ss_pred             hhhcccchHHhcCCcceeeeecccchhhhhHHHHHHHHHhcCCCeeccccccchhhhcccc------cccccHHHHHHHH
Confidence            3       23356777899999987776665556665 45699999998875432221111      0011112222222


Q ss_pred             C-CCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778        369 T-PQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       369 ~-~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT  405 (433)
                      . ++.+.|.-.   .-..++.++++++.++|+++|+|+
T Consensus       156 ~~~~~p~~~k~---v~~~~~~e~a~~~~~aGvd~i~vs  190 (310)
T d1vcfa1         156 LPLPFPVMVKE---VGHGLSREAALALRDLPLAAVDVA  190 (310)
T ss_dssp             CSCSSCEEEEC---SSSCCCHHHHHHHTTSCCSEEECC
T ss_pred             hhccCCceeee---ecCcccHHHHHHHHHcCCCEEEec
Confidence            1 111122111   012256889999999999998864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.57  E-value=1.2e-15  Score=136.59  Aligned_cols=157  Identities=20%  Similarity=0.205  Sum_probs=111.8

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh----C--CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhh
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRL----G--VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l----g--~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (433)
                      ..++|++|+|+|+|||||||+|+.|++++    +  ..++|+|.+...     +.....|+..........+...+..+.
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~-----l~~~l~ys~~~r~~~~~r~~~~a~~~~   94 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFG-----LNKDLGFSEADRNENIRRIAEVAKLFA   94 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTT-----TTTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHh-----hcCCCCCChhHHHHHHHHHHHHHHHHh
Confidence            35789999999999999999999999866    3  457899987532     222344555555556667777777888


Q ss_pred             hCCCcEEEEcCcccHHHHHHHHhc----------CC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHH-------HHhh
Q psy16778        108 VDNLTGVLVCSALRRNYRDIIRNN----------NR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLES-------QFQT  169 (433)
Q Consensus       108 ~~~~~~Vi~~~~~~~~~~~~l~~~----------~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~-------~~~~  169 (433)
                      .++..+|++........|+..++.          .. ++.|||+||.+++.+|..++.-    ......       .-..
T Consensus        95 ~~g~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~y----~~~~~~~~~~~~gvd~~  170 (208)
T d1m7ga_          95 DSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLY----KKAREGVIKEFTGISAP  170 (208)
T ss_dssp             HTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHH----HHHHHTSSSSCBTTTBC
T ss_pred             ccCCceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhcccch----hhhhcCcccceeccccc
Confidence            899889999888888887776642          12 7899999999999998644320    000000       0122


Q ss_pred             ccCCCCCCCCCeEEEccC-CCHHHHHHHHhcCCCC
Q psy16778        170 LEEPDPLVEPDVRTVSVN-EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       170 ~~~~~~~~~~~~~~Id~~-~~~ee~~~~i~~~l~~  203 (433)
                      +++|.    .++++||++ .++++.+++|.+.|.+
T Consensus       171 ye~P~----~~dl~Idt~~~s~~e~~~~Ii~~L~~  201 (208)
T d1m7ga_         171 YEAPA----NPEVHVKNYELPVQDAVKQIIDYLDT  201 (208)
T ss_dssp             CCCCS----SCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred             CCCCC----CCcEEEeCCCCCHHHHHHHHHHHHHH
Confidence            34443    278999998 8999999999876644

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.56  E-value=2.5e-15  Score=132.83  Aligned_cols=165  Identities=14%  Similarity=0.152  Sum_probs=100.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC---cCC-hhHHHHHHHHHHH--hhh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND---EDR-RPWLNNINRIIHQ--LNV  108 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~--~~~  108 (433)
                      ..+|.+|+|+|+|||||||+++.|++++|+.+++++++++.........+..++.   ... ... ......+..  ...
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   81 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPS-IVTVKLLKNAIDAN   81 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCH-HHHHHHHHHHHHTS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccch-HHHHHHHHHHhhhh
Confidence            4677899999999999999999999999999999988764321111110100000   000 000 111111111  112


Q ss_pred             CCCcEEEEcCcccHHHHHHHHhcC----C-eEEEEEEcCHHHHHHHHHHhhCCCC----CHHhHHHHHhhccC-------
Q psy16778        109 DNLTGVLVCSALRRNYRDIIRNNN----R-VVFIYLKAEFGVILSRLQKRAEHFM----PADLLESQFQTLEE-------  172 (433)
Q Consensus       109 ~~~~~Vi~~~~~~~~~~~~l~~~~----~-~~vv~L~~~~e~l~~Rl~~R~~~~~----~~~~l~~~~~~~~~-------  172 (433)
                      ...++|+++.+........+.+..    . ..+|||++|++++.+|+.+|+....    ..+.+..+++.+..       
T Consensus        82 ~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~e~~~~Rl~~y~~~~~~~~~  161 (194)
T d1qf9a_          82 QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVID  161 (194)
T ss_dssp             TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHH
T ss_pred             hcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            345788988876666665554421    1 6899999999999999988864322    23334433333221       


Q ss_pred             CCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        173 PDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       173 ~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      .|. .....++||.+.+++++.+.|.+.+
T Consensus       162 ~y~-~~~~~~~Id~~~~ieeV~~~I~~ii  189 (194)
T d1qf9a_         162 HYN-KFDKVKIIPANRDVNEVYNDVENLF  189 (194)
T ss_dssp             HHH-HTTCEEEEECSSCHHHHHHHHHHHH
T ss_pred             HHH-hCCCEEEEECCCCHHHHHHHHHHHH
Confidence            110 1124468888899999999887654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.56  E-value=1.9e-14  Score=124.09  Aligned_cols=159  Identities=12%  Similarity=0.037  Sum_probs=96.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe--CCCCCccccccc----cccCCCCCCc----CCh-hHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFID--GDHLHPQSNIDK----MSAKQPLNDE----DRR-PWLNNINRIIHQ  105 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id--~D~~~~~~~~~~----~~~~~~~~~~----~~~-~~~~~~~~~~~~  105 (433)
                      .+++|+|+|+|||||||+++.|+++++..+++  .|.+........    ..........    ... ..+......+..
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHHHH
Confidence            45799999999999999999999999876654  444322110000    0000111100    011 122233444555


Q ss_pred             hhhCCCcEEEEcCcccHHH-HHH---HHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCe
Q psy16778        106 LNVDNLTGVLVCSALRRNY-RDI---IRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDV  181 (433)
Q Consensus       106 ~~~~~~~~Vi~~~~~~~~~-~~~---l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~  181 (433)
                      ....+..++++........ ...   +.......+|||+|+++++.+|+..|+++..  .....++...+.+..    .+
T Consensus        82 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~--~~~~~~~~~~~~~~~----~d  155 (178)
T d1qhxa_          82 MARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRVA--GMAAKQAYVVHEGVE----YD  155 (178)
T ss_dssp             HHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSCT--THHHHHTTGGGTTCC----CS
T ss_pred             HHhhccceEEeeeecchHHHHHHHHHhhcCCceeecccCCCHHHHHHHHHhcCCcch--hhhhhhhhhhhcCCC----CC
Confidence            5667767777665422221 111   1111126789999999999999999876543  233444455555432    67


Q ss_pred             EEEccC-CCHHHHHHHHhcCC
Q psy16778        182 RTVSVN-EPLEGIVSKSAIMP  201 (433)
Q Consensus       182 ~~Id~~-~~~ee~~~~i~~~l  201 (433)
                      ++||++ .+++|+++.|..++
T Consensus       156 l~IDts~~s~ee~a~~I~~~v  176 (178)
T d1qhxa_         156 VEVDTTHKESIECAWAIAAHV  176 (178)
T ss_dssp             EEEETTSSCHHHHHHHHHTTC
T ss_pred             EEEECCCCCHHHHHHHHHHhc
Confidence            999998 89999999998875

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=2.2e-15  Score=131.65  Aligned_cols=163  Identities=13%  Similarity=0.130  Sum_probs=102.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCC---CcCChhHHHHHHHHHHHhh---hCCCc
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLN---DEDRRPWLNNINRIIHQLN---VDNLT  112 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~  112 (433)
                      |.|+|+|+|||||||+++.|++++|+.+++++++...........+....   +............++....   ....+
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANG   80 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCcccccc
Confidence            68999999999999999999999999999998876432111100000000   0000001112223333322   23456


Q ss_pred             EEEEcCcccHHHHHHHHhc----C-C-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccC----CCC-CCCCCe
Q psy16778        113 GVLVCSALRRNYRDIIRNN----N-R-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEE----PDP-LVEPDV  181 (433)
Q Consensus       113 ~Vi~~~~~~~~~~~~l~~~----~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~----~~~-~~~~~~  181 (433)
                      +++++.+........+.+.    . . .++++|+++.+++.+|+..|+......+.+..+++.+..    ... |+ ...
T Consensus        81 ~i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r~~~~~~~i~~rl~~y~~~~~~l~~~y~-~~~  159 (181)
T d2cdna1          81 FILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYR-DQL  159 (181)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHTT-TTE
T ss_pred             EEecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHh-cCe
Confidence            8888887665554444331    1 1 589999999999999999997655555655555444322    100 12 256


Q ss_pred             EEEccCCCHHHHHHHHhcCCC
Q psy16778        182 RTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       182 ~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      +.||.+.+++++.++|.+.+.
T Consensus       160 ~~Id~~~s~eeV~~~I~~~l~  180 (181)
T d2cdna1         160 KTVDAVGTMDEVFARALRALG  180 (181)
T ss_dssp             EEEECCSCHHHHHHHHHHHTT
T ss_pred             EEEECCCCHHHHHHHHHHHhC
Confidence            889999999999999987664

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.55  E-value=6.9e-16  Score=135.97  Aligned_cols=159  Identities=16%  Similarity=0.110  Sum_probs=99.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc----------cccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK----------MSAKQPLNDEDRRPWLNNINRIIHQL  106 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (433)
                      .|++|+|+|+|||||||+++.|++++|+.|++++++.+......          +..|....   ...............
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~   78 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP---DEIVVNMVKERLRQP   78 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHSH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCccc---ceeehhhhhhHhhhc
Confidence            57899999999999999999999999999999988754311000          00111100   001111112122222


Q ss_pred             hhCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHh---hccCCCCCCCCCe
Q psy16778        107 NVDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQ---TLEEPDPLVEPDV  181 (433)
Q Consensus       107 ~~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~---~~~~~~~~~~~~~  181 (433)
                      .....++|+++.+........+.+...  ..+|||+++++++.+|+..|.....-...+....+   ...+.|   +...
T Consensus        79 ~~~~~~~vid~~~~~~~q~~~l~~~~~~p~~~i~L~~~~e~l~~R~~~~~~~e~~~~rl~~y~~~~~~l~~~y---~~~~  155 (189)
T d1zaka1          79 DAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVFDDTEEKVKLRLETYYQNIESLLSTY---ENII  155 (189)
T ss_dssp             HHHHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHTT---CCCE
T ss_pred             ccccCcEEeeccchhhHHHhhhhhcccccchheeechhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHh---CCCE
Confidence            223347899988888777777876543  68999999999999999776532111112222111   122222   2256


Q ss_pred             EEEccCCCHHHHHHHHhcCC
Q psy16778        182 RTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       182 ~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ++||.+.+++++.++|.+.+
T Consensus       156 ~~Id~~~~idev~~~I~~~l  175 (189)
T d1zaka1         156 VKVQGDATVDAVFAKIDELL  175 (189)
T ss_dssp             EEEECSSCHHHHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHH
Confidence            78888899999998886654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=9.5e-15  Score=127.32  Aligned_cols=157  Identities=9%  Similarity=0.071  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC----cCChhHHHHHHHHHHHhh---hCCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND----EDRRPWLNNINRIIHQLN---VDNL  111 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~  111 (433)
                      |+|+|+|+|||||||+++.|++++|+.+++++++...........+..+..    ....+ ...+...+....   ....
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~-d~~v~~~~~~~~~~~~~~~   79 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT-DELVIALVKERIAQEDCRN   79 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCC-HHHHHHHHHHHHTSGGGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCc-chhHHHHHHHhhccccccc
Confidence            689999999999999999999999999999988864321111111111100    00000 111222222211   2234


Q ss_pred             cEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCC-------CC----CCC
Q psy16778        112 TGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEP-------DP----LVE  178 (433)
Q Consensus       112 ~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~-------~~----~~~  178 (433)
                      ++++++.+........+.+...  ..+|||++|++++.+|+.+|..    .+.+...+..++..       |.    ...
T Consensus        80 g~i~~g~pr~~~~~~~~~~~~~~~~~vi~L~~~~~~l~~R~~~~~~----~e~i~~r~~~y~~~~~~v~~~y~~~~~~~~  155 (179)
T d1e4va1          80 GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVKDDQ----EETVRKRLVEYHQMTAPLIGYYSKEAEAGN  155 (179)
T ss_dssp             CEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTCS----HHHHHHHHHHHHHHTTHHHHHHHHHHHHTS
T ss_pred             ceeecccccchHHhhhhhhccCCceEEEEeccchhhhhhhhccccc----HHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence            6888888877777666666543  7899999999999999988753    23333332222110       00    011


Q ss_pred             CCeEEEccCCCHHHHHHHHhcC
Q psy16778        179 PDVRTVSVNEPLEGIVSKSAIM  200 (433)
Q Consensus       179 ~~~~~Id~~~~~ee~~~~i~~~  200 (433)
                      ...+.||.+.+++++.++|.+.
T Consensus       156 ~~~~~IDa~~~ieeV~~~I~~~  177 (179)
T d1e4va1         156 TKYAKVDGTKPVAEVRADLEKI  177 (179)
T ss_dssp             CEEEEEETTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHH
Confidence            2457889889999999998764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.51  E-value=7.3e-15  Score=126.78  Aligned_cols=155  Identities=14%  Similarity=0.136  Sum_probs=87.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhC-CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEE
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLG-VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGV  114 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg-~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  114 (433)
                      +++++|+|+|+|||||||+++.|+++++ ..+++.+.+..........................+.+.+......+.+++
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   82 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHV   82 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSEEE
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhhHHHhhcccchHHHHHHHHHHHHHhhhhhccccc
Confidence            5789999999999999999999999996 566666655422111110000000111122333344444555555665666


Q ss_pred             EEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC------HHhHHHHHhhccCCCCCCCCCeEEEccC-
Q psy16778        115 LVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP------ADLLESQFQTLEEPDPLVEPDVRTVSVN-  187 (433)
Q Consensus       115 i~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~Id~~-  187 (433)
                      ++....     ..+.+.....+|||+||++++.+|+.+|+.....      .+.+...+..+.+.+  .  .+++|+++ 
T Consensus        83 ~~~~~~-----~~~~~~~~~~vI~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~e~~~~~~~~~~~~~--~--~~~~i~~~~  153 (174)
T d1y63a_          83 VDYHSS-----ELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAY--E--DDIVLVREN  153 (174)
T ss_dssp             EECSCC-----TTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHS--C--GGGEEEEEC
T ss_pred             ccHHHH-----HHHHHhcCceEEEEECCHHHHHHHHHhCCCcccccccchhhhhhhhhHHHHHHhh--c--CCEEEECCC
Confidence            654331     1122211157899999999999999998632111      111222233333333  2  45666654 


Q ss_pred             CCHHHHHHHHhc
Q psy16778        188 EPLEGIVSKSAI  199 (433)
Q Consensus       188 ~~~ee~~~~i~~  199 (433)
                      .+++++.+.|.+
T Consensus       154 ~t~ee~~~~V~~  165 (174)
T d1y63a_         154 DTLEQMAATVEE  165 (174)
T ss_dssp             SSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            888888766543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.9e-13  Score=118.27  Aligned_cols=148  Identities=14%  Similarity=0.060  Sum_probs=104.6

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCC
Q psy16778         32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNL  111 (433)
Q Consensus        32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (433)
                      ++...++.+|+++|+|||||||+++.++..+++.+++.|++..                     .......+...+.+|.
T Consensus         8 ~~~~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~---------------------~~~~~~~~~~~l~~g~   66 (172)
T d1yj5a2           8 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGS---------------------WQRCVSSCQAALRQGK   66 (172)
T ss_dssp             CSSCSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCS---------------------HHHHHHHHHHHHHTTC
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHH---------------------HHHHHHHHHHHHHCCC
Confidence            3445778999999999999999999999999999999998642                     1233455666777889


Q ss_pred             cEEEEcCcccHHHHHHH----HhcCC-eEEEEEEcCHHHHHHHHHHhhCC-----CCCHHhHHHHHhhccCCCCCCCC-C
Q psy16778        112 TGVLVCSALRRNYRDII----RNNNR-VVFIYLKAEFGVILSRLQKRAEH-----FMPADLLESQFQTLEEPDPLVEP-D  180 (433)
Q Consensus       112 ~~Vi~~~~~~~~~~~~l----~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~-----~~~~~~l~~~~~~~~~~~~~~~~-~  180 (433)
                      ++|+|.+......|..+    ++.+. ..+||+++|.+++.+|+.+|...     ..+...+......+++|...+-. .
T Consensus        67 ~vIiD~t~~~~~~R~~~~~~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~~~~~~~~v~~~~~~~~~~~fe~P~~~Egf~~  146 (172)
T d1yj5a2          67 RVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLE  146 (172)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCGGGSCSC
T ss_pred             CceeeCcCCCHHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHhcccCcccCccHHHHHHHHHHhCCCCCcccCCcE
Confidence            99999988776665544    33333 67899999999999999998532     23456677778888887641111 2


Q ss_pred             eEEEccC--CCHHHHHHHHhcC
Q psy16778        181 VRTVSVN--EPLEGIVSKSAIM  200 (433)
Q Consensus       181 ~~~Id~~--~~~ee~~~~i~~~  200 (433)
                      .+.|+..  ...++..+++.+.
T Consensus       147 i~~i~~~~~~~~d~~~~kl~~q  168 (172)
T d1yj5a2         147 ILEIPFRLQEHLDPALQRLYRQ  168 (172)
T ss_dssp             EEEECCCCCTTSCHHHHHHHTS
T ss_pred             EEEECCccCCccCHHHHHHHHH
Confidence            2334432  4455555555443

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.49  E-value=2.6e-14  Score=122.84  Aligned_cols=156  Identities=17%  Similarity=0.138  Sum_probs=94.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCe-EEeCCCCCccccccccccCCCCCCcC---ChhHHHHHHHHHHHhhhCCCcE
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVK-FIDGDHLHPQSNIDKMSAKQPLNDED---RRPWLNNINRIIHQLNVDNLTG  113 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~-~id~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  113 (433)
                      +.+|+|+|+|||||||+|+.|++.++.. ++++|.+....     ..+.......   .......+...+......+..+
T Consensus         2 ~klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (176)
T d2bdta1           2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-----VGGYRPPWESDELLALTWKNITDLTVNFLLAQNDV   76 (176)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-----CTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHH-----hccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            4689999999999999999999999776 45666654221     1111111111   1112233444455566778888


Q ss_pred             EEEcCcccHHHHHHH---Hh-cCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccC
Q psy16778        114 VLVCSALRRNYRDII---RN-NNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVN  187 (433)
Q Consensus       114 Vi~~~~~~~~~~~~l---~~-~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~  187 (433)
                      +++.......++...   .+ ...  ..++||.++++++.+|+.+|.............+..+....   ....++|+++
T Consensus        77 iid~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~---~~~~~~id~~  153 (176)
T d2bdta1          77 VLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLELVEEFESKG---IDERYFYNTS  153 (176)
T ss_dssp             EEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHHHHHHHHTT---CCTTSEEECS
T ss_pred             ccccccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHhCCCchhhhHHHHHHHHHHHhCC---CCCeEEEECC
Confidence            888766544443322   22 222  57899999999999999998643222222222222222221   1255778887


Q ss_pred             -CCHHHHHHHHhcCC
Q psy16778        188 -EPLEGIVSKSAIMP  201 (433)
Q Consensus       188 -~~~ee~~~~i~~~l  201 (433)
                       .+++++.+.|...+
T Consensus       154 ~~~~~~~~~~I~~i~  168 (176)
T d2bdta1         154 HLQPTNLNDIVKNLK  168 (176)
T ss_dssp             SSCGGGHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence             78888888776654

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.47  E-value=3.3e-14  Score=119.96  Aligned_cols=137  Identities=15%  Similarity=0.184  Sum_probs=88.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH-hCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhC---CCc
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR-LGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVD---NLT  112 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~-lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  112 (433)
                      ++.+|+|+|+|||||||+++.|.+. .++.+++.|++...........+..+...............+...+..   +..
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG   80 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccCCC
Confidence            3568999999999999999988654 488999999875432111111122222221122222333344444443   345


Q ss_pred             EEEEcCcccHHHHH----HHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCC
Q psy16778        113 GVLVCSALRRNYRD----IIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEP  173 (433)
Q Consensus       113 ~Vi~~~~~~~~~~~----~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~  173 (433)
                      +|++.+......++    .+++.+. ..+|||++|.+++.+|+.+|+.+..+.+.+..+++.++++
T Consensus        81 vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~  146 (152)
T d1ly1a_          81 VIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREY  146 (152)
T ss_dssp             EEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGCCCHHHHHHHHHHHHHH
T ss_pred             cccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHHccCCCCCCHHHHHHHHHHHHhh
Confidence            77777775555543    4444433 7889999999999999999987677777787777776554

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-14  Score=128.03  Aligned_cols=165  Identities=16%  Similarity=0.128  Sum_probs=87.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEE
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGV  114 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  114 (433)
                      ..+|++|+|+|+|||||||+|+.|+++++..+++.+.+..............+.......+.+.....+......+..++
T Consensus        16 ~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (195)
T d1x6va3          16 GFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCI   95 (195)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCCccc
Confidence            34789999999999999999999999997766666555432111111112222222333444455556666677777777


Q ss_pred             EEcCcccHHHHHHHH----hcCC-eEEEEEEcCHHHHHHHHHHhhCCCCC---HHhHHHHHhhccCCCCCCCCCeEEEcc
Q psy16778        115 LVCSALRRNYRDIIR----NNNR-VVFIYLKAEFGVILSRLQKRAEHFMP---ADLLESQFQTLEEPDPLVEPDVRTVSV  186 (433)
Q Consensus       115 i~~~~~~~~~~~~l~----~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~Id~  186 (433)
                      ++........+....    .... ...+++.++..+..++..++......   ...+......++.+    +.++++||+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~~dl~IdT  171 (195)
T d1x6va3          96 TSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKP----EAPELVLKT  171 (195)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTTCCEEEEEECC------------------------------CCCCC----SSCSEEECT
T ss_pred             cccccchHHHHHHHHHHHhccccccccccchhheeeehhhccchhhhhhhhhhhhhhhhhccccCCC----CCCCEEEEC
Confidence            777664444333322    2222 55666777777766666544311111   11111112223333    237799999


Q ss_pred             C-CCHHHHHHHHhcCCCC
Q psy16778        187 N-EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       187 ~-~~~ee~~~~i~~~l~~  203 (433)
                      + .++++++++|.+.+.+
T Consensus       172 ~~~s~ee~~~~Il~~l~~  189 (195)
T d1x6va3         172 DSCDVNDCVQQVVELLQE  189 (195)
T ss_dssp             TTSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            8 8999999999877644

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=3.6e-15  Score=127.03  Aligned_cols=153  Identities=20%  Similarity=0.260  Sum_probs=88.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCC---CcCChhHHHHHHHHHHHhhhCCCcEEE
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLN---DEDRRPWLNNINRIIHQLNVDNLTGVL  115 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Vi  115 (433)
                      +.|+|+|+|||||||+|+.||++||+++++.|.......      +....   ....+.....+..........+...++
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT------GADVGWVFDLEGEEGFRDREEKVINELTEKQGIVL   76 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH------TSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhh------cccccchhhhhhhhHHHHHHHHHHHhhccccceEe
Confidence            469999999999999999999999999999887643211      11110   011122222333333333334444555


Q ss_pred             EcCc---ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC------CHHhHHHHHhhccCCCCCCCCCeEEEcc
Q psy16778        116 VCSA---LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM------PADLLESQFQTLEEPDPLVEPDVRTVSV  186 (433)
Q Consensus       116 ~~~~---~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~Id~  186 (433)
                      ....   ........+...  ...+++.+++.++..|+..+.....      ....+...+..+.+.|  .+.++++||+
T Consensus        77 ~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~d~~Idt  152 (169)
T d1kaga_          77 ATGGGSVKSRETRNRLSAR--GVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLY--EEIADVTIRT  152 (169)
T ss_dssp             ECCTTGGGSHHHHHHHHHH--SEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHH--HHHCSEEC--
T ss_pred             eccchhhhhhhhhHHhhhc--ceeeeccCcHHHhhhHhhhccccchhcccccchhHHHHHHHHhhhhh--hccCCEEEEC
Confidence            4433   334444455554  3899999999999999877543211      2334444444444443  3346799999


Q ss_pred             C-CCHHHHHHHHhcCC
Q psy16778        187 N-EPLEGIVSKSAIMP  201 (433)
Q Consensus       187 ~-~~~ee~~~~i~~~l  201 (433)
                      + .+++|++++|.+.+
T Consensus       153 ~~~s~ee~v~~Ii~~l  168 (169)
T d1kaga_         153 DDQSAKVVANQIIHML  168 (169)
T ss_dssp             ---CHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            8 89999999997653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=2.6e-13  Score=119.78  Aligned_cols=167  Identities=13%  Similarity=0.161  Sum_probs=101.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc-cccCCCC---CCc----CChhHHHHHHHHHHH
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK-MSAKQPL---NDE----DRRPWLNNINRIIHQ  105 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~-~~~~~~~---~~~----~~~~~~~~~~~~~~~  105 (433)
                      +.++..+|+|+|+|||||||+|+.|+++||+.||+++++++...... ...+..+   ...    ........+...+..
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   83 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISD   83 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHh
Confidence            44567899999999999999999999999999999988764211100 0000000   000    001111222222222


Q ss_pred             -hhhCCCcEEEEcCcccHHHHHHHHhcC-C-eEEEEEEcCHHHHHHHHHHhhC---C-CCCHHhHHHHHhhccCC-----
Q psy16778        106 -LNVDNLTGVLVCSALRRNYRDIIRNNN-R-VVFIYLKAEFGVILSRLQKRAE---H-FMPADLLESQFQTLEEP-----  173 (433)
Q Consensus       106 -~~~~~~~~Vi~~~~~~~~~~~~l~~~~-~-~~vv~L~~~~e~l~~Rl~~R~~---~-~~~~~~l~~~~~~~~~~-----  173 (433)
                       .......+|+++.+........+.... . ..+++|+++.+++.+|+..|..   + ....+.+...+..+..-     
T Consensus        84 ~~~~~~~~~vl~g~p~~~~q~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~~~~l~  163 (196)
T d1ukza_          84 NVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVI  163 (196)
T ss_dssp             HHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHH
T ss_pred             hhccCCCceeeeccchhHHHHHHHHHhccccceeeccCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence             233445788888776655555555443 3 7899999999999999977642   1 22344444444333221     


Q ss_pred             --CCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        174 --DPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       174 --~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                        |. .....+.||.+.+++++.++|.+.+
T Consensus       164 ~~y~-~~~~~~~Id~~~s~eeV~~~I~~~i  192 (196)
T d1ukza_         164 EYFE-TKSKVVRVRCDRSVEDVYKDVQDAI  192 (196)
T ss_dssp             HHHH-TTTCEEEEECSSCHHHHHHHHHHHH
T ss_pred             HHHH-hcCCEEEEECCCCHHHHHHHHHHHH
Confidence              11 2224578888899999999987654

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=4.2e-15  Score=129.84  Aligned_cols=160  Identities=12%  Similarity=0.067  Sum_probs=94.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCC----CCcCC---hhHHHHHHHHHHHhhhCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPL----NDEDR---RPWLNNINRIIHQLNVDN  110 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~  110 (433)
                      .+.|+|+|+|||||||+++.|++++|+.++++++++..........|..+    .....   ......+...+.......
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACK   81 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCcccc
Confidence            47899999999999999999999999999999988643111100000000    00000   111122333333333344


Q ss_pred             CcEEEEcCcccHHHHH----HHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHH----HhhccCCCCCCCCC
Q psy16778        111 LTGVLVCSALRRNYRD----IIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQ----FQTLEEPDPLVEPD  180 (433)
Q Consensus       111 ~~~Vi~~~~~~~~~~~----~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~----~~~~~~~~~~~~~~  180 (433)
                      .++|+++.+......+    .+.....  ..+|+|+++.+++.+|+..|.......+.....    .+.+.+.     ..
T Consensus        82 ~g~i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~~~~~~~r~~~y~~~~~~v~~~y~~~-----~~  156 (180)
T d1akya1          82 NGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITNADALKKRLAAYHAQTEPIVDFYKKT-----GI  156 (180)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHSHHHHHHHHHHHHHHTTHHHHHHHHH-----TC
T ss_pred             CCEeccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhcccccccccchHHHHHHHHHHHHHHHHhc-----CC
Confidence            5789998875554433    3333322  689999999999999987663100000111111    1111111     13


Q ss_pred             eEEEccCCCHHHHHHHHhcCCC
Q psy16778        181 VRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       181 ~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                      .+.||.+.+++++.+.|.+.|.
T Consensus       157 ~~~Id~~~~~eeV~~~I~~~l~  178 (180)
T d1akya1         157 WAGVDASQPPATVWADILNKLG  178 (180)
T ss_dssp             EEEEETTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCHHHHHHHHHHHHc
Confidence            4778988999999999987654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.45  E-value=1.3e-14  Score=127.79  Aligned_cols=167  Identities=16%  Similarity=0.121  Sum_probs=98.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCC------CCcCC-hhHHHHHHHHHHHhh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPL------NDEDR-RPWLNNINRIIHQLN  107 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~  107 (433)
                      ..+.+.|+|+|+|||||||+++.|++++|+.|++++++.+.........+...      ..... ......+.+.+..  
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~--   80 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKN--   80 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH--
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhh--
Confidence            35678999999999999999999999999999999988753211110000000      00011 1111222222322  


Q ss_pred             hCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCC-HHhHHHHHhhccCCCCCCCCCeEEEc
Q psy16778        108 VDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMP-ADLLESQFQTLEEPDPLVEPDVRTVS  185 (433)
Q Consensus       108 ~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~Id  185 (433)
                      ....++|+++.+....+.+.+.+... ..+|+|+++.+++.+|+..|...... .+.+........+.|. +....+.|+
T Consensus        81 ~~~~~~ildGfPr~~~q~~~l~~~~~~~~vi~L~v~~~~l~~R~~~r~e~~~kr~~~y~~~~~~v~~~Y~-~~~~l~~id  159 (189)
T d2ak3a1          81 LTQYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTDRPETVVKRLKAYEAQTEPVLEYYR-KKGVLETFS  159 (189)
T ss_dssp             HTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHTGSHHHHHHHHHHHHHHHHHHHHHHH-HHTCEEEEE
T ss_pred             hhhcCcccccccchhhHHHHhhhcCcceEEEEEeccchhhhhhcccchHHHHHHHHHHHHHHHHHHHHHH-hcCCEEEEC
Confidence            23456899988888888888877655 68999999999999999777521100 0011111111111111 111335555


Q ss_pred             cCCCHHHHHHHHhcCCCCCC
Q psy16778        186 VNEPLEGIVSKSAIMPPTRA  205 (433)
Q Consensus       186 ~~~~~ee~~~~i~~~l~~~~  205 (433)
                      .. +++++.++|.+.+..++
T Consensus       160 g~-~~~eV~~~I~~~i~~~l  178 (189)
T d2ak3a1         160 GT-ETNKIWPHVYAFLQTKL  178 (189)
T ss_dssp             CS-SHHHHHHHHHHHHHTTS
T ss_pred             CC-ChHHHHHHHHHHHHHHh
Confidence            54 67888888777665433

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.45  E-value=5.3e-14  Score=123.66  Aligned_cols=162  Identities=11%  Similarity=0.057  Sum_probs=101.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccc----------cCCCCCCcCChhHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMS----------AKQPLNDEDRRPWLNNINRIIHQ  105 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~  105 (433)
                      ++|+.|+|+|+|||||||+++.||+++|+.|++++++++........          .|....   .......+...+..
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~---~~~v~~~~~~~l~~   77 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS---DEMVLELIEKNLET   77 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHTS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccc---cceeeeeehhhhcc
Confidence            36788999999999999999999999999999998876431111111          111110   11112222222222


Q ss_pred             hhhCCCcEEEEcCcccHHHHHHHHhc----CC--eEEEEEEcCHHHHHHHHHHhhCCC-CCHHhHHHHHhhccC------
Q psy16778        106 LNVDNLTGVLVCSALRRNYRDIIRNN----NR--VVFIYLKAEFGVILSRLQKRAEHF-MPADLLESQFQTLEE------  172 (433)
Q Consensus       106 ~~~~~~~~Vi~~~~~~~~~~~~l~~~----~~--~~vv~L~~~~e~l~~Rl~~R~~~~-~~~~~l~~~~~~~~~------  172 (433)
                      . ...+++|+++.+........+.+.    ..  ..+++++++.+.+.+|+..|.... ...+.+..+++.+..      
T Consensus        78 ~-~~~~g~ii~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~~d~~~e~i~~R~~~y~~~~~p~~  156 (190)
T d1ak2a1          78 P-PCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLV  156 (190)
T ss_dssp             G-GGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             c-cccCceeecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhhccCCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence            2 234578999887665554444432    11  689999999999999999986432 334444433333322      


Q ss_pred             -CCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        173 -PDPLVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       173 -~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                       .|. ...-..+||.+.+++++.++|.+.+.
T Consensus       157 ~~y~-~~~~~~~Id~~~s~eeV~~~I~~~l~  186 (190)
T d1ak2a1         157 EYYS-KRGIHSAIDASQTPDVVFASILAAFS  186 (190)
T ss_dssp             HHHH-HTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             HHHH-hcCCEEEEECCCCHHHHHHHHHHHHH
Confidence             111 11234678988999999999977653

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.3e-13  Score=121.54  Aligned_cols=161  Identities=11%  Similarity=0.143  Sum_probs=100.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc-----------cccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK-----------MSAKQPLNDEDRRPWLNNINRIIHQL  106 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (433)
                      |++|+|+|+|||||||+|+.|++++|+.|++++++++......           +..+....   .......+...+...
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~---d~~~~~~~~~~~~~~   77 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVP---VEITISLLKREMDQT   77 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCC---HHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccc---cchhhHHHHHhhccc
Confidence            6899999999999999999999999999999998864321110           00000000   011112222222222


Q ss_pred             h---hCCCcEEEEcCcccHHHHHHHHhc---C-C-eEEEEEEcCHHHHHHHHHHhhCC---C-CCHHhHHHHHhhccC--
Q psy16778        107 N---VDNLTGVLVCSALRRNYRDIIRNN---N-R-VVFIYLKAEFGVILSRLQKRAEH---F-MPADLLESQFQTLEE--  172 (433)
Q Consensus       107 ~---~~~~~~Vi~~~~~~~~~~~~l~~~---~-~-~~vv~L~~~~e~l~~Rl~~R~~~---~-~~~~~l~~~~~~~~~--  172 (433)
                      .   ....++++++.+....+...+...   . . ..+++++++.+++.+|+.+|...   . ...+.+...++.+..  
T Consensus        78 ~~~~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~~~~  157 (194)
T d1teva_          78 MAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQST  157 (194)
T ss_dssp             HHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHH
T ss_pred             chhhhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHHHHH
Confidence            1   234578888888776666555432   1 1 57899999999999999988532   1 224444444333322  


Q ss_pred             -----CCCCCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        173 -----PDPLVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       173 -----~~~~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                           .|. .....+.||.+.+++++.+.|.+.+.
T Consensus       158 ~~l~~~y~-~~~~~~~IDa~~s~eeV~~~I~~il~  191 (194)
T d1teva_         158 KPIIDLYE-EMGKVKKIDASKSVDEVFDEVVQIFD  191 (194)
T ss_dssp             HHHHHHHH-HTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-hcCCEEEEECCCCHHHHHHHHHHHHh
Confidence                 110 11234678988999999999987543

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.43  E-value=7.4e-14  Score=123.22  Aligned_cols=166  Identities=14%  Similarity=0.132  Sum_probs=104.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCC------C-cCChhHHHHHHHHHHHhh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLN------D-EDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~  107 (433)
                      ++++.+|+|+|+|||||||+++.|++++|+.+++++++.+.........+....      . .........+...+....
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   84 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKV   84 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhcc
Confidence            356789999999999999999999999999999999886532211111110000      0 001111222333333333


Q ss_pred             hCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhC---C-CCCHHhHHHHHhhccC-------CC
Q psy16778        108 VDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAE---H-FMPADLLESQFQTLEE-------PD  174 (433)
Q Consensus       108 ~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~---~-~~~~~~l~~~~~~~~~-------~~  174 (433)
                      ....++|+++.+......+.+.+...  ..++++.++.+++.+|...+..   + ....+.+..+++.+.+       .|
T Consensus        85 ~~~~g~ildg~pr~~~qa~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~r~~d~~e~i~~R~~~y~~~~~~~~~~y  164 (194)
T d3adka_          85 DTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAFY  164 (194)
T ss_dssp             TTCSCEEEESCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHTCCCCCSTTHHHHHHHHHHHTHHHHHHH
T ss_pred             cccccceeeeccchhHHHHHHHHHhCCccchhccccchhhhHhHhhhhcccccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34557899988877777777766543  6899999999999999766531   1 1223334444333322       12


Q ss_pred             CCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        175 PLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       175 ~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      . .....+.||.+.+++++.+.|.+.+
T Consensus       165 ~-~~~~~~~Id~~~s~~eV~~~I~~~i  190 (194)
T d3adka_         165 E-KRGIVRKVNAEGSVDDVFSQVCTHL  190 (194)
T ss_dssp             T-TTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred             H-hcCCEEEEECCCCHHHHHHHHHHHH
Confidence            1 2224577898899999999997655

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.35  E-value=9.4e-14  Score=119.31  Aligned_cols=109  Identities=16%  Similarity=0.219  Sum_probs=65.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEc
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVC  117 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~  117 (433)
                      -+.|+|+|+|||||||+++.|++++|+++++.|+..+......   ...............+.+.+....... +.+...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   79 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYD---GYDEEYDCPILDEDRVVDELDNQMREG-GVIVDY   79 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBC---CCCSSSSCCCBCHHHHHHHHHHHHHHC-CEEEEC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhcccc---chhHHhhhhhHHHHHHHHHhhhhhhcC-Ccccch
Confidence            3678999999999999999999999999999998764322111   111111111112223333333323222 333333


Q ss_pred             CcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhC
Q psy16778        118 SALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAE  155 (433)
Q Consensus       118 ~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~  155 (433)
                      ....     .+.......++||+++++++.+|+.+|+.
T Consensus        80 ~~~~-----~~~~~~~~~~i~l~~~~~~~~~Rl~~r~~  112 (173)
T d1rkba_          80 HGCD-----FFPERWFHIVFVLRTDTNVLYERLETRGY  112 (173)
T ss_dssp             SCCT-----TSCGGGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             hHHH-----HHHHhcCCCcceecCCHHHHHHHHHhcCC
Confidence            2211     11111115789999999999999999863

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.35  E-value=2.3e-13  Score=118.73  Aligned_cols=155  Identities=11%  Similarity=0.147  Sum_probs=94.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccc----------cccCCCCCCcCChhHHHHHHHHHHHhhh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDK----------MSAKQPLNDEDRRPWLNNINRIIHQLNV  108 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (433)
                      |+|+|+|+|||||||+++.|+++||+.+++++++.+......          +..|....+   ......+...+... .
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d---~~~~~~~~~~~~~~-~   76 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPD---EVTIGIVRERLSKS-D   76 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCH---HHHHHHHHHHHTSS-T
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccC---cchhHHHHHhhccc-c
Confidence            679999999999999999999999999999988764311111          011111100   11111121111111 1


Q ss_pred             CCCcEEEEcCcccHHHHHHHHh----cCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccC-------CCC
Q psy16778        109 DNLTGVLVCSALRRNYRDIIRN----NNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEE-------PDP  175 (433)
Q Consensus       109 ~~~~~Vi~~~~~~~~~~~~l~~----~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~-------~~~  175 (433)
                      ...++|+++.+........+.+    ..-  ..+++++++.+.+.+|+..+..    .+.+...++.+.+       .|.
T Consensus        77 ~~~~~vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~~~~~~----~e~i~~R~~~y~~~~~~i~~~y~  152 (182)
T d1s3ga1          77 CDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARLTADDN----PDTVTNRLEVNMNQTAPLLAFYD  152 (182)
T ss_dssp             TSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCS----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceeeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhhhccch----hHHHHHHHHHHHHHHHHHHHHHH
Confidence            2346888888766555444433    211  5788999999999999865532    3334433333221       111


Q ss_pred             CCCCCeEEEccCCCHHHHHHHHhcCCC
Q psy16778        176 LVEPDVRTVSVNEPLEGIVSKSAIMPP  202 (433)
Q Consensus       176 ~~~~~~~~Id~~~~~ee~~~~i~~~l~  202 (433)
                       .....+.||.+.+++++.+.|.+.+.
T Consensus       153 -~~~~~~~Id~~~~~eeV~~~I~~il~  178 (182)
T d1s3ga1         153 -SKEVLVNINGQKDIKDVFKDLDVILQ  178 (182)
T ss_dssp             -TTTCEEEEECSSCHHHHHHHHHHHHT
T ss_pred             -hcCCEEEEECCCCHHHHHHHHHHHHH
Confidence             22255788888999999999977654

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=2.2e-13  Score=131.15  Aligned_cols=141  Identities=30%  Similarity=0.460  Sum_probs=112.7

Q ss_pred             CCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc------------
Q psy16778        289 ISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD------------  349 (433)
Q Consensus       289 ~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~------------  349 (433)
                      .+..++|++|+...+...|-|+....++|.+...++.+... .+..-+|      ++.+.++|++..-            
T Consensus         3 ~~i~d~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~aFd~i~l~pr~L~d~~~idlst~~lG~~l~~P~~Iapmtgg~~   82 (349)
T d1tb3a1           3 VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSI   82 (349)
T ss_dssp             CSHHHHHHHHHHTSCHHHHHHHHCCCTTCHHHHHHHHHHHHCCBCCCCSSCCSSCBCCEEETTEEESSSEEECCCSCGGG
T ss_pred             ccHHHHHHHHHHHCCHHHHHHHhccccccHHHHHHHHHHHhccEEcccccCCCCCCCceeECCcCccceEEEcchhcccc
Confidence            34568999999888888999999999999999888888655 5544443      3447778887651            


Q ss_pred             -----------cccccCC------CccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCC
Q psy16778        350 -----------IRNKFNM------PSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFG  412 (433)
Q Consensus       350 -----------~~~~~~~------~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g  412 (433)
                                 ....+++      -+..+.|++.+..++.+.|||+|+.+++..+.+++++++++|++++++|||+|+.|
T Consensus        83 ~~~~~~~~lA~aA~~~g~~~~~~s~s~~~~e~v~~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~~  162 (349)
T d1tb3a1          83 AWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLG  162 (349)
T ss_dssp             TCTTTHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHSTTCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSCC
T ss_pred             cccchhhHHHHhhhhcccceeecccccccchhhhhhccCCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhhc
Confidence                       1111222      24557899988888888999999999999999999999999999999999999999


Q ss_pred             CchhhhhcCCCCCCCCC
Q psy16778        413 TRYADIRNKFNMPSHLK  429 (433)
Q Consensus       413 ~r~~~~r~~~~~~~~~~  429 (433)
                      +|++|.|++|.+|.++.
T Consensus       163 ~~~~d~r~~~~~~~~~~  179 (349)
T d1tb3a1         163 NRRRDKRNQLNLEANIL  179 (349)
T ss_dssp             CCHHHHHTTCCCCC---
T ss_pred             chhhhhhccccCCcccc
Confidence            99999999999987654

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.31  E-value=2e-13  Score=118.81  Aligned_cols=157  Identities=12%  Similarity=0.141  Sum_probs=90.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC----cC---ChhHHHHHHHHHHHhhhCCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND----ED---RRPWLNNINRIIHQLNVDNL  111 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~  111 (433)
                      |+|+|+|+|||||||+++.|++++|+.+++++++...........+...+.    ..   .......+.+.+... ....
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   79 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKD-DCQN   79 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSG-GGTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhch-hhhc
Confidence            579999999999999999999999999999998864311111010100000    00   001111111111111 1234


Q ss_pred             cEEEEcCcccHHHHH----HHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccC-------CCCCCC
Q psy16778        112 TGVLVCSALRRNYRD----IIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEE-------PDPLVE  178 (433)
Q Consensus       112 ~~Vi~~~~~~~~~~~----~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~-------~~~~~~  178 (433)
                      ++++++.........    .......  ..+++|+++.+.+.+|+..+.+    .+.+...++.+.+       .|. ..
T Consensus        80 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R~~~~~~----~e~~~~Rl~~y~~~~~~l~~~y~-~~  154 (182)
T d1zina1          80 GFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTADDN----EATVANRLEVNMKQMKPLVDFYE-QK  154 (182)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTTCS----HHHHHHHHHHHHHHHTHHHHHHH-HH
T ss_pred             CcccccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhccccccc----hHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence            677777664433222    2222111  6899999999999999987753    2333333322211       110 11


Q ss_pred             CCeEEEccCCCHHHHHHHHhcCC
Q psy16778        179 PDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       179 ~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ...++||.+.+++++.++|.+.|
T Consensus       155 ~~~~~Id~~~~~eeV~~~I~~~L  177 (182)
T d1zina1         155 GYLRNINGEQDMEKVFADIRELL  177 (182)
T ss_dssp             TCEEEEECSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH
Confidence            24577898899999999987654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.30  E-value=5.6e-13  Score=114.95  Aligned_cols=166  Identities=14%  Similarity=0.124  Sum_probs=79.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCC--cCChhHHHHHHHHHHHhhhCCCc
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLND--EDRRPWLNNINRIIHQLNVDNLT  112 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  112 (433)
                      .++|.+|+|+|+|||||||+|+.|+++|+..+++.+.......... ..+..+..  +.................... .
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   80 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH-ELSSELGFTREDRHTNIQRIAFVATELTRAG-A   80 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH-HTCTTCCCSHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHhhh-ccccccchhHHHHHHHHHHHHHHhhhhhccc-c
Confidence            5789999999999999999999999999655444433322111111 11111111  111111112222222222233 3


Q ss_pred             EEEEc-CcccHHHHH---HHHhcCC-eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeEEEccC
Q psy16778        113 GVLVC-SALRRNYRD---IIRNNNR-VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVRTVSVN  187 (433)
Q Consensus       113 ~Vi~~-~~~~~~~~~---~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~  187 (433)
                      +++.. .........   ....... +..+++.++......|...+... .........+......+.....++++||++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~di~IDT~  159 (183)
T d1m8pa3          81 AVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYA-AARRGEIKGFTGVDDPYETPEKADLVVDFS  159 (183)
T ss_dssp             EEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHH-HHHTTSSSSCBTTTBCCCCCSSCSEEECTT
T ss_pred             eeecccchhhhHHHHHHHHhhcccchhhhhhHHHHHHHHHhhhhhhccc-chhhchhhhhhhhcccccCCCCCcEEEECC
Confidence            33333 332222211   1222221 45666677777666554222100 000000000111111111112367999998


Q ss_pred             -CCHHHHHHHHhcCCCC
Q psy16778        188 -EPLEGIVSKSAIMPPT  203 (433)
Q Consensus       188 -~~~ee~~~~i~~~l~~  203 (433)
                       .++++++++|.+.|.+
T Consensus       160 ~~s~~e~v~~I~~~L~~  176 (183)
T d1m8pa3         160 KQSVRSIVHEIILVLES  176 (183)
T ss_dssp             TSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence             8999999999876643

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=2.2e-12  Score=113.21  Aligned_cols=159  Identities=15%  Similarity=0.144  Sum_probs=87.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccc------cccccccCCCCCCcCChh-----------HHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQS------NIDKMSAKQPLNDEDRRP-----------WLNN   98 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~------~~~~~~~~~~~~~~~~~~-----------~~~~   98 (433)
                      +.|++|+|+|++||||||+++.|.+ +|+.++++|.+....      ..........+.......           ....
T Consensus         1 k~p~IIgitG~~gSGKstva~~l~~-~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~   79 (191)
T d1uf9a_           1 KHPIIIGITGNIGSGKSTVAALLRS-WGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKA   79 (191)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHH-TTCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEEccHHHHHhhhcccccccccccceeccCchhhhhHHHhhhcCchhhhh
Confidence            3579999999999999999999965 899999998864220      011111111111111111           1111


Q ss_pred             HHHH---------HHHhhhCCCcEE-EEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHh
Q psy16778         99 INRI---------IHQLNVDNLTGV-LVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQ  168 (433)
Q Consensus        99 ~~~~---------~~~~~~~~~~~V-i~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~  168 (433)
                      +...         ..........++ +......+..   +.... +.+||++||.+++.+|+.+|.+.  ..+.+.....
T Consensus        80 l~~~~~~~~~~~~~~~~~~~~~~~vi~e~~~~~~~~---~~~~~-d~vI~v~a~~e~r~~Rl~~R~~~--~~~~~~~~~~  153 (191)
T d1uf9a_          80 LEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKG---WEGRL-HGTLLVAAPLEERVRRVMARSGL--SREEVLARER  153 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTTT---CGGGS-SEEEEECCCHHHHHHHHHTTTCC--TTHHHHHHHT
T ss_pred             hhhhhhHHHHHHHHhhhhhcccceEEEEeecccccc---ccccc-eeEEEEecchhhHHHHHHhcccc--hHHHHHHHHH
Confidence            1111         111222233444 4433222111   11111 47999999999999999999642  2233333332


Q ss_pred             hccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        169 TLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       169 ~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      .+.+.....+.++++|+++.+.+++..++.+.+
T Consensus       154 ~q~~~~~~~~~aD~vI~N~~s~~~l~~~v~~il  186 (191)
T d1uf9a_         154 AQMPEEEKRKRATWVLENTGSLEDLERALKAVL  186 (191)
T ss_dssp             TSCCHHHHHHHCSEEECCSSHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHhCCEEEECCCCHHHHHHHHHHHH
Confidence            222111012237899999999999888776543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=2.5e-12  Score=115.49  Aligned_cols=135  Identities=15%  Similarity=0.155  Sum_probs=70.4

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccccc
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSNI   78 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~~   78 (433)
                      ++++||++.||.          ..+++++++++.+|++++|+|+|||||||+.+++++.+    |..++++.++..... 
T Consensus         1 Iev~nv~k~yg~----------~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~-   69 (232)
T d2awna2           1 VQLQNVTKAWGE----------VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP-   69 (232)
T ss_dssp             EEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG-
T ss_pred             CEEEEEEEEECC----------EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch-
Confidence            478999999987          45677788999999999999999999999999999966    777888887753322 


Q ss_pred             cccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         79 DKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      .....|+.||+....+.++..+++.......+.    +.....+...+.+....  +.-+.+..+.++....+||-
T Consensus        70 ~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~----~~~~~~~~v~~~l~~~~--l~~~~~~~~~~LSGGqkQRv  139 (232)
T d2awna2          70 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGA----KKEVINQRVNQVAEVLQ--LAHLLDRKPKALSGGQRQRV  139 (232)
T ss_dssp             GGTCEEEECSSCCC-------------------------CHHHHHHHHHHHHC-----------------------
T ss_pred             hhceeeeeccccccccchhHHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCC--ChhhhhCChhhCCHHHHHHH
Confidence            223468999998888888888887665443331    11112233345555543  45677888888888887775

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=8.3e-11  Score=104.59  Aligned_cols=166  Identities=14%  Similarity=0.157  Sum_probs=90.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEeCCCCCccccc----cc-cccCCCCCCcCChhHH--H--HHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL---GVKFIDGDHLHPQSNI----DK-MSAKQPLNDEDRRPWL--N--NINRII  103 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id~D~~~~~~~~----~~-~~~~~~~~~~~~~~~~--~--~~~~~~  103 (433)
                      ++|.+|+|.|+.||||||+++.|++.|   |+.++-++........    .. +............-.+  +  .....+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~~~~i   80 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI   80 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHHHHhH
Confidence            478999999999999999999999987   6666544322111000    00 0011111110000001  0  112345


Q ss_pred             HHhhhCCCcEEEEcCc------------ccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhh
Q psy16778        104 HQLNVDNLTGVLVCSA------------LRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQT  169 (433)
Q Consensus       104 ~~~~~~~~~~Vi~~~~------------~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~  169 (433)
                      ...+.+|..+|+|-..            ....+.+.+.....  +++|||++|++++.+|...++......+.++...+.
T Consensus        81 ~~~l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~~~~~E~~~~~~r~~~~  160 (209)
T d1nn5a_          81 KEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRC  160 (209)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHHHHHHHHHH
T ss_pred             HHHhhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhhcccccccccHHHHHHHHHH
Confidence            6666777667766432            11222222222222  799999999999999987766544444444444444


Q ss_pred             ccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        170 LEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       170 ~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      +...........++||++.+++++.++|...+
T Consensus       161 Y~~l~~~~~~~~~~IDa~~~~e~V~~~I~~~v  192 (209)
T d1nn5a_         161 FHQLMKDTTLNWKMVDASKSIEAVHEDIRVLS  192 (209)
T ss_dssp             HHHHTTCTTSCEEEEETTSCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            44333201124588999999999988876543

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=6.4e-12  Score=111.89  Aligned_cols=156  Identities=20%  Similarity=0.250  Sum_probs=85.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc------ccc--ccCCCC-CCcC--ChhH-----------
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI------DKM--SAKQPL-NDED--RRPW-----------   95 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~------~~~--~~~~~~-~~~~--~~~~-----------   95 (433)
                      ..+|+|||++||||||+++.|.+ +|+.++|+|.+......      ..+  ..|..+ ....  ....           
T Consensus         3 k~iIgitG~igSGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fg~~i~~~~~~i~r~~L~~~vf~~~~~   81 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEE   81 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHH
T ss_pred             CEEEEEECCCcCCHHHHHHHHHH-CCCcEEEchHHHHHHHhccchHHHHHHHHhhcccccCCcccchhhhhhhhhhhHHH
Confidence            35899999999999999999975 79999999987532100      000  011111 1111  0111           


Q ss_pred             HHHHHHHHHHh---------hhCCCcEEEEcCc-ccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHH
Q psy16778         96 LNNINRIIHQL---------NVDNLTGVLVCSA-LRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLES  165 (433)
Q Consensus        96 ~~~~~~~~~~~---------~~~~~~~Vi~~~~-~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~  165 (433)
                      ...++..+...         ......+++.... ..+..   +.... ..+|+++|+++++.+|+.+|++  ...+.+..
T Consensus        82 ~~~Le~i~hp~v~~~~~~~~~~~~~~~~~~e~~ll~e~~---~~~~~-~~iI~V~a~~e~r~~R~~~R~~--~~~~~~~~  155 (208)
T d1vhta_          82 KNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENS---LYKKA-NRVLVVDVSPETQLKRTMQRDD--VTREHVEQ  155 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECTTTTTTT---GGGGC-SEEEEEECCHHHHHHHHHHHHT--CCHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhcCCcceeeeeccccc---ccccC-CEEEEEeCCHHHHHHHHHHhhh--hhHHHHHH
Confidence            11122222211         1222233333222 22111   11111 4799999999999999999975  23333333


Q ss_pred             HHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778        166 QFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIM  200 (433)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~  200 (433)
                      ....+.......+.++++|+++.+++++..++.+.
T Consensus       156 ~~~~Q~~~~~k~~~aD~vI~N~~~le~l~~~v~~l  190 (208)
T d1vhta_         156 ILAAQATREARLAVADDVIDNNGAPDAIASDVARL  190 (208)
T ss_dssp             HHHHSCCHHHHHHHCSEEEECSSCTTSHHHHHHHH
T ss_pred             HHHhCCCHHHHHHhCCEEEECCCCHHHHHHHHHHH
Confidence            33332221111223789999999999888776543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.10  E-value=1.3e-11  Score=109.68  Aligned_cols=155  Identities=16%  Similarity=0.166  Sum_probs=82.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcccc-----ccc-c--ccCC-CCCCcC--ChhH-----------
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSN-----IDK-M--SAKQ-PLNDED--RRPW-----------   95 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~-----~~~-~--~~~~-~~~~~~--~~~~-----------   95 (433)
                      ..+|+|||.+||||||+++.|.+ +|++++|+|.+.....     ... .  ..+. .+....  ....           
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~vf~~~~~   80 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED   80 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH-CCCeEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhhhhhhhh
Confidence            36899999999999999999975 8999999997642210     000 0  0111 111111  0111           


Q ss_pred             HHHHHHHHH--------Hh-hhCCCcEEE-EcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHH
Q psy16778         96 LNNINRIIH--------QL-NVDNLTGVL-VCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMPADLLES  165 (433)
Q Consensus        96 ~~~~~~~~~--------~~-~~~~~~~Vi-~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~  165 (433)
                      ...++..+.        .. ...+..+|+ ....+.+..   +.... +.+|+++||++++.+|+.+|.+  ...+.+..
T Consensus        81 ~~~l~~i~hp~v~~~~~~~~~~~~~~~vv~e~~ll~e~~---~~~~~-d~ii~v~~~~~~r~~R~~~R~~--~s~e~~~~  154 (205)
T d1jjva_          81 KLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENK---LTALC-DRILVVDVSPQTQLARSAQRDN--NNFEQIQR  154 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTT---CGGGC-SEEEEEECCHHHHHHHHC-------CHHHHHH
T ss_pred             hhHhhcccCHHHHHHHHHHHhhccCCeEEEEeccccccc---hhhhh-hheeeecchHHHHHHHHHhcCC--chHHHHHH
Confidence            112222222        11 223334444 433333221   11111 5799999999999999999964  33444444


Q ss_pred             HHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhc
Q psy16778        166 QFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAI  199 (433)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~  199 (433)
                      .+..+.......+.++++|+++.+.++..+.+.+
T Consensus       155 ~~~~Q~~~~~k~~~aD~vI~N~~~l~~~~~~l~~  188 (205)
T d1jjva_         155 IMNSQVSQQERLKWADDVINNDAELAQNLPHLQQ  188 (205)
T ss_dssp             HHHHSCCHHHHHHHCSEEEECCSCHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHhCCEEEECCCChHHHHHHHHH
Confidence            4443322111122378999999888877666544

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.09  E-value=6e-12  Score=113.58  Aligned_cols=99  Identities=18%  Similarity=0.247  Sum_probs=76.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      +++++||++.||.          ..+++++++++.+|.+++|+|++||||||+++++++.+    |..++++.++.....
T Consensus         3 ~i~v~nl~k~yg~----------~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~   72 (240)
T d1g2912           3 GVRLVDVWKVFGE----------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEK   72 (240)
T ss_dssp             EEEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGG
T ss_pred             cEEEEeEEEEECC----------EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccch
Confidence            7899999999987          44677777999999999999999999999999999866    667787766532211


Q ss_pred             -----ccccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778         78 -----IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDN  110 (433)
Q Consensus        78 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (433)
                           ......|+.||++...+.++..+++.......+
T Consensus        73 ~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~  110 (240)
T d1g2912          73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK  110 (240)
T ss_dssp             TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT
T ss_pred             hhhcccccccceecccchhhcchhhhhHhhhhhHHHcC
Confidence                 112346889999887777778888776655544

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.09  E-value=7.5e-11  Score=105.46  Aligned_cols=39  Identities=26%  Similarity=0.437  Sum_probs=35.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcc
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQ   75 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~   75 (433)
                      +..+|+|.|||||||||+|+.||++||++|++++++++.
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~   40 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA   40 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHH
Confidence            457899999999999999999999999999999988653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.09  E-value=2.7e-10  Score=98.25  Aligned_cols=161  Identities=16%  Similarity=0.068  Sum_probs=79.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCccccccccccCCCCCC-c--CChhHH----HHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHPQSNIDKMSAKQPLND-E--DRRPWL----NNINRIIHQ  105 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~~~~~~~~~~~~~~~~-~--~~~~~~----~~~~~~~~~  105 (433)
                      +++|+|+|++||||||+++.|+++|+     ...++.++...... .. .....+.. .  ......    ......+ .
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   77 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVA-KE-ENLVSDRDQMRKMDPETQKRIQKMAGRKI-A   77 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHH-HH-TTSCSSGGGGSSCCHHHHHHHHHHHHHHH-H
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHH-HH-HHhhhhhhhhhhhhchhhHHHHHHHHHHH-H
Confidence            47899999999999999999999883     33444443321110 00 00001100 0  001111    1111122 2


Q ss_pred             hhhCCCcEEEEcCccc--------HHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCC---CHHhHHHH---Hhhcc
Q psy16778        106 LNVDNLTGVLVCSALR--------RNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFM---PADLLESQ---FQTLE  171 (433)
Q Consensus       106 ~~~~~~~~Vi~~~~~~--------~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~---~~~~l~~~---~~~~~  171 (433)
                      ....+..++++.....        ..............++||+++++++.+|+.+|..+..   ....++..   ...+.
T Consensus        78 ~~~~~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (190)
T d1khta_          78 EMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAA  157 (190)
T ss_dssp             HHHTTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHhCCCeEEECCcccchHHHHHHHhhhhhhhhhccccceeeecCCHHHHHHHHHHhccccCCcccHHHHHHHHHHHHHHH
Confidence            2344556777654311        0001111111115899999999999999987654322   12211111   10110


Q ss_pred             CCCC-CCCCCeEEEcc-CCCHHHHHHHHhcCC
Q psy16778        172 EPDP-LVEPDVRTVSV-NEPLEGIVSKSAIMP  201 (433)
Q Consensus       172 ~~~~-~~~~~~~~Id~-~~~~ee~~~~i~~~l  201 (433)
                      ..+. +......+|++ +.++++++++|.+.|
T Consensus       158 ~~~~~~~~~~~~~v~~~~~~~ee~~~ei~~~l  189 (190)
T d1khta_         158 MSYGVLTGATVKIVQNRNGLLDQAVEELTNVL  189 (190)
T ss_dssp             HHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCeEEEECCCCCHHHHHHHHHHHh
Confidence            0000 01113344555 599999999987653

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=1e-11  Score=111.93  Aligned_cols=91  Identities=15%  Similarity=0.121  Sum_probs=67.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      .++++||+++||.          ..+++++++++.+|++++|+|+|||||||+.+++++.+    |..++++.++.....
T Consensus         6 ~I~v~nlsk~yg~----------~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~   75 (239)
T d1v43a3           6 EVKLENLTKRFGN----------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP   75 (239)
T ss_dssp             CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG
T ss_pred             eEEEEEEEEEECC----------EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCc
Confidence            6789999999987          45777788999999999999999999999999999976    777888877653222


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHH
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRII  103 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (433)
                       .....|+.||+....+.++..+++.
T Consensus        76 -~~r~ig~v~Q~~~l~~~ltv~enl~  100 (239)
T d1v43a3          76 -KDRNISMVFQSYAVWPHMTVYENIA  100 (239)
T ss_dssp             -GGGTEEEEEC------CCCHHHHHH
T ss_pred             -ccceEEEEeechhhcccchHHHHHH
Confidence             2235688888876555555555554

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=1.4e-09  Score=96.35  Aligned_cols=164  Identities=17%  Similarity=0.211  Sum_probs=88.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh---CCeEEe-CCCCCcc---cccccccc-CCCCCCcCChh----------HHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL---GVKFID-GDHLHPQ---SNIDKMSA-KQPLNDEDRRP----------WLNN   98 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l---g~~~id-~D~~~~~---~~~~~~~~-~~~~~~~~~~~----------~~~~   98 (433)
                      +|+.|+|.|+.||||||+++.|++.|   |+..+- .-.-...   ........ +..........          ....
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   80 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQL   80 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccchhhhHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence            57899999999999999999999987   543221 1100000   00000000 11111111100          1112


Q ss_pred             HHHHHHHhhhCCCcEEEEcCc------------ccHHHHHHHHh----cCC-eEEEEEEcCHHHHHHHHHHhhCCC----
Q psy16778         99 INRIIHQLNVDNLTGVLVCSA------------LRRNYRDIIRN----NNR-VVFIYLKAEFGVILSRLQKRAEHF----  157 (433)
Q Consensus        99 ~~~~~~~~~~~~~~~Vi~~~~------------~~~~~~~~l~~----~~~-~~vv~L~~~~e~l~~Rl~~R~~~~----  157 (433)
                      ....+...+..+..+|.+-..            ....+...+..    ... .+++||++|++++.+|+.+|+...    
T Consensus        81 ~~~~i~~~l~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri~~R~~~~~~~~  160 (210)
T d4tmka_          81 VETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQ  160 (210)
T ss_dssp             HHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTTT
T ss_pred             HHHHHHHHHHcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHhhhccccchhhh
Confidence            334455666677655555211            12222222221    112 789999999999999999997432    


Q ss_pred             CCHHhHHHHHhhccCCCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        158 MPADLLESQFQTLEEPDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       158 ~~~~~l~~~~~~~~~~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ...+.+....+.+.+... .....++||++.+++++.+.|.+.+
T Consensus       161 ~~~~~~~~v~~~y~~~~~-~~~~~~~IDa~~~~e~v~~~I~~~i  203 (210)
T d4tmka_         161 ESFDFFNRTRARYLELAA-QDKSIHTIDATQPLEAVMDAIRTTV  203 (210)
T ss_dssp             SCHHHHHHHHHHHHHHHH-TCTTEEEEETTSCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHh-cCCCEEEEECCCCHHHHHHHHHHHH
Confidence            123333333333322211 1125688999999999998886543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.04  E-value=4.7e-12  Score=113.39  Aligned_cols=132  Identities=18%  Similarity=0.167  Sum_probs=93.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      +++++||++.||.           .+++++++++.+|++++|+|++||||||+.++|++.+    |..++++.++.....
T Consensus         1 mi~v~nlsk~y~~-----------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~   69 (229)
T d3d31a2           1 MIEIESLSRKWKN-----------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP   69 (229)
T ss_dssp             CEEEEEEEEECSS-----------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH
T ss_pred             CEEEEEEEEEeCC-----------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccch
Confidence            5789999999985           1456677999999999999999999999999999976    777888877754222


Q ss_pred             ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHhh
Q psy16778         78 IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                       .....|+.||+....+.++..+++.......+..       ..+...+.+....  +.-+++..+.++....+||-
T Consensus        70 -~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~-------~~~~~~~~l~~~~--l~~~~~~~~~~LSGG~~QRv  136 (229)
T d3d31a2          70 -EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK-------DPKRVLDTARDLK--IEHLLDRNPLTLSGGEQQRV  136 (229)
T ss_dssp             -HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC-------CHHHHHHHHHHTT--CTTTTTSCGGGSCHHHHHHH
T ss_pred             -hHhcceeeccccccCccccHHHHHHHHHhhcccc-------HHHHHHHHHHHhc--chhhHhCChhhCCHHHhcch
Confidence             2335789999988887778888876655444321       1233444454432  22334566666666666664

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.03  E-value=1.6e-12  Score=117.34  Aligned_cols=139  Identities=14%  Similarity=0.100  Sum_probs=92.8

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      .++++||+++|+...        ..+++++++++.+|++++|+|+|||||||+.++|+..+    |-.++++.++.....
T Consensus         3 ~i~v~nlsk~y~~g~--------~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~   74 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGK--------VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGK   74 (242)
T ss_dssp             CEEEEEEEEEEGGGT--------EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTE
T ss_pred             EEEEEeEEEEECCCC--------EEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCch
Confidence            678999999995322        34667777999999999999999999999999999966    667777766642110


Q ss_pred             ----ccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCCeEEEEEEcCHHHHHHHHHHh
Q psy16778         78 ----IDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNRVVFIYLKAEFGVILSRLQKR  153 (433)
Q Consensus        78 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R  153 (433)
                          ......|+.||+....+.++..+++...+...+.+    .....+...+.+...+  +.-+.+..+..+....+||
T Consensus        75 ~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~----~~~~~~~v~~~l~~~g--L~~~~~~~p~~LSGGqkQR  148 (242)
T d1oxxk2          75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMS----KEEIRKRVEEVAKILD--IHHVLNHFPRELSGAQQQR  148 (242)
T ss_dssp             ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCC----HHHHHHHHHHHHHHTT--CGGGTTSCGGGSCHHHHHH
T ss_pred             hhcchhhccceEEeccccccccccHHHHhhhhhHhhcCC----HHHHHHHHHHHHhhcC--hHhhhhCChhhCCHHHHhH
Confidence                11224689999987777788888887765543311    0111122334444432  2233456666676666666


Q ss_pred             h
Q psy16778        154 A  154 (433)
Q Consensus       154 ~  154 (433)
                      -
T Consensus       149 v  149 (242)
T d1oxxk2         149 V  149 (242)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.01  E-value=1.2e-10  Score=112.20  Aligned_cols=138  Identities=29%  Similarity=0.476  Sum_probs=111.3

Q ss_pred             CCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEE-----------eeeecccCccccc--------
Q psy16778        289 ISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVL-----------TVDTNVFGTRYAD--------  349 (433)
Q Consensus       289 ~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~l-----------tvD~~~~G~r~~~--------  349 (433)
                      .+..+||.+|++..+...|.|+....+++.+...|+.+    |..+-+           ++.+.++|++..-        
T Consensus         4 ~~i~d~~~~A~~~lp~~~~~y~~gga~~~~t~~~N~~~----Fd~i~l~pr~L~d~~~iDlst~~lG~~~~~P~~IspMt   79 (359)
T d1goxa_           4 TNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNA----FSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTA   79 (359)
T ss_dssp             CSTTHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHG----GGGEEECCCCSCCCSCCBCCEEETTEEESSSEEECCCS
T ss_pred             cCHHHHHHHHHHhCCHHHHHHHhccCCccHHHHHHHHH----HHhcceecccccCCCCCCCceeECCcccCCceeecccc
Confidence            46779999999888888999999999999998777655    555555           3347778876651        


Q ss_pred             ---------------cccccC------CCccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCC
Q psy16778        350 ---------------IRNKFN------MPSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDT  408 (433)
Q Consensus       350 ---------------~~~~~~------~~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~  408 (433)
                                     .+..++      .-+..+++++.+..+. +.|||+|..++...+..++++++++|++++++|+|.
T Consensus        80 gg~~~~~~~e~~lA~aA~~~gi~~~~~s~s~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~  158 (359)
T d1goxa_          80 MQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPG-IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT  158 (359)
T ss_dssp             CGGGTCTTHHHHHHHHHHHTTCCEEECTTCSSCHHHHHTTCCC-CEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             ccccCCCchHHHhhhhHHhhCCcccccccccccchhhHHhcCC-CcccccccchhHHHHHHHHHHHHHhhcccccccccc
Confidence                           111111      2245688999887664 679999999999999999999999999999999999


Q ss_pred             CCCCCchhhhhcCCCCCCCCCCC
Q psy16778        409 NVFGTRYADIRNKFNMPSHLKED  431 (433)
Q Consensus       409 ~~~g~r~~~~r~~~~~~~~~~~~  431 (433)
                      |+.+.|+++.|+++..|+.+...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~  181 (359)
T d1goxa_         159 PRLGRREADIKNRFVLPPFLTLK  181 (359)
T ss_dssp             SSCCCCHHHHHTTCCCCTTCCCG
T ss_pred             hhhhhhhhhccccccCCcccchh
Confidence            99999999999999999877654

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.00  E-value=9.6e-10  Score=95.19  Aligned_cols=152  Identities=15%  Similarity=0.157  Sum_probs=78.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe-CCCCCccccccccccCCCCCCcCChhHHH-------------------
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFID-GDHLHPQSNIDKMSAKQPLNDEDRRPWLN-------------------   97 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id-~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------   97 (433)
                      |.+|+|+|||||||||+++.|.+.+.-.++. ....+.+..  +-..|..+.......+..                   
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~--~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~   79 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRP--GEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHR   79 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCT--TCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCc--cccCCcceeeccchhhhhhhcccccchhhhcccCccc
Confidence            6899999999999999999999987333222 222211110  001122211101111110                   


Q ss_pred             --HHHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEE-EcCHHHHHHHHHHhhCCCCCHHhHHHHHhhcc--
Q psy16778         98 --NINRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYL-KAEFGVILSRLQKRAEHFMPADLLESQFQTLE--  171 (433)
Q Consensus        98 --~~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L-~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~--  171 (433)
                        .....+......|..++++...   .....++.... ..+||+ ..+.+++.+|+.+|+..  ..+.+...+....  
T Consensus        80 ~g~~~~~~~~~~~~g~~~i~~~~~---~g~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg~~--~~e~I~~Rl~~~~~e  154 (182)
T d1znwa1          80 SGTLAQPVRAAAATGVPVLIEVDL---AGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTE--TADVIQRRLDTARIE  154 (182)
T ss_dssp             EEEEHHHHHHHHHHTCCEEEECCH---HHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCS--CHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhcCCcccccccc---chhhhhhhcCcceeEEeeecccHHHHHHHhhhcCcc--hHHHHHHHHHHHHHH
Confidence              1122344445566677777653   22233333333 344444 56789999999999642  2233332221110  


Q ss_pred             CCCCCCCCCeEEEccCCCHHHHHHHHhc
Q psy16778        172 EPDPLVEPDVRTVSVNEPLEGIVSKSAI  199 (433)
Q Consensus       172 ~~~~~~~~~~~~Id~~~~~ee~~~~i~~  199 (433)
                      ..+  ....+.+|.++ +.++..+++.+
T Consensus       155 ~~~--~~~fD~vI~Nd-dle~a~~~l~~  179 (182)
T d1znwa1         155 LAA--QGDFDKVVVNR-RLESACAELVS  179 (182)
T ss_dssp             HHG--GGGSSEEEECS-SHHHHHHHHHH
T ss_pred             Hhh--HhcCCEEEECc-CHHHHHHHHHH
Confidence            000  11245666664 68888877754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.99  E-value=1.1e-10  Score=101.18  Aligned_cols=160  Identities=14%  Similarity=0.106  Sum_probs=77.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC-----eEEeCCCCCccccccccccCCCCCC--------cCChhHHH-HHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGV-----KFIDGDHLHPQSNIDKMSAKQPLND--------EDRRPWLN-NINRIIH  104 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~-----~~id~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~  104 (433)
                      ++|+|+|++||||||+++.|++.|+.     .+++.++.......   ..+.....        ........ ..+....
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATAL---KLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAE   78 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHH---TTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHH---HHHhhhhhhhccccchhhcccCHHHHHHHHHH
Confidence            57889999999999999999999843     23443322111000   00111000        00011111 1222222


Q ss_pred             HhhhCC-CcEEEEcCccc-------HH-HHHHHHhcCCeEEEEEEcCHHHHHHHHHHhhCCCCC---HHhHHHHHhhcc-
Q psy16778        105 QLNVDN-LTGVLVCSALR-------RN-YRDIIRNNNRVVFIYLKAEFGVILSRLQKRAEHFMP---ADLLESQFQTLE-  171 (433)
Q Consensus       105 ~~~~~~-~~~Vi~~~~~~-------~~-~~~~l~~~~~~~vv~L~~~~e~l~~Rl~~R~~~~~~---~~~l~~~~~~~~-  171 (433)
                      ...... ..+++++....       .. .........+..++||+++++++.+|+.+|..+...   .+.+......+. 
T Consensus        79 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~~r~~~~r~~~~~~~~~~~~~~~~~  158 (194)
T d1nksa_          79 EARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFAR  158 (194)
T ss_dssp             HHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHH
T ss_pred             HHHHhCCCcEEEEccCchHHHHHHHHhHHHHHHhhhccccceEEecCHHHHHHHHHHhhhcccccchHHHHHHHHHHHHH
Confidence            222233 34455543210       00 111111111258999999999999999887644322   121111111110 


Q ss_pred             ---CC-CCCCCCCeEEEccC-CCHHHHHHHHhcCC
Q psy16778        172 ---EP-DPLVEPDVRTVSVN-EPLEGIVSKSAIMP  201 (433)
Q Consensus       172 ---~~-~~~~~~~~~~Id~~-~~~ee~~~~i~~~l  201 (433)
                         .. ..+......+|++. .++++++++|.+.+
T Consensus       159 ~~~~~~~~~~~~~~~~I~~~~~~~ee~~~~Ii~~i  193 (194)
T d1nksa_         159 YAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM  193 (194)
T ss_dssp             HHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHh
Confidence               00 00011245666665 99999999997653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.98  E-value=3.1e-11  Score=108.21  Aligned_cols=102  Identities=18%  Similarity=0.111  Sum_probs=78.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      +++++||+++|+...      ....+++++++++.+|++++|+|+|||||||++++++..+    |..++++-++.....
T Consensus         1 mI~i~nlsk~y~~~~------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~   74 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGE------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD   74 (230)
T ss_dssp             CEEEEEEEEEEEETT------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH
T ss_pred             CEEEEeEEEEeCCCC------eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCCh
Confidence            578999999997421      2234678888999999999999999999999999999966    778888877653211


Q ss_pred             c-----cccccCCCCCCcCChhHHHHHHHHHHHhhhC
Q psy16778         78 I-----DKMSAKQPLNDEDRRPWLNNINRIIHQLNVD  109 (433)
Q Consensus        78 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (433)
                      .     .....|+.||+....+.++..+++...+...
T Consensus        75 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~  111 (230)
T d1l2ta_          75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK  111 (230)
T ss_dssp             HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred             hhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHh
Confidence            1     1224689999987777788888887766543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=8.2e-10  Score=98.02  Aligned_cols=37  Identities=22%  Similarity=0.333  Sum_probs=31.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC----------eEEeCCCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGV----------KFIDGDHLH   73 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~----------~~id~D~~~   73 (433)
                      +|-+|+|+|++||||||+++.|++.+|.          .+++.|+++
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy   47 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY   47 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccc
Confidence            4678999999999999999999998853          568888775

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=3.9e-11  Score=108.16  Aligned_cols=103  Identities=16%  Similarity=0.161  Sum_probs=77.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      +++++||+++|+...      ....+++++++++.+|++++|+|+|||||||++++|++.+    |...+++.++.....
T Consensus         1 mi~v~nlsk~y~~~~------~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~   74 (240)
T d3dhwc1           1 MIKLSNITKVFHQGT------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE   74 (240)
T ss_dssp             CEEEEEEEEEEECSS------CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCH
T ss_pred             CEEEEeEEEEeCCCC------eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCCh
Confidence            578999999997522      1234677888999999999999999999999999999966    677787777643211


Q ss_pred             --cc--ccccCCCCCCcCChhHHHHHHHHHHHhhhCC
Q psy16778         78 --ID--KMSAKQPLNDEDRRPWLNNINRIIHQLNVDN  110 (433)
Q Consensus        78 --~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (433)
                        ..  ....|++||+....+.++..+++...+...+
T Consensus        75 ~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~  111 (240)
T d3dhwc1          75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN  111 (240)
T ss_dssp             HHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT
T ss_pred             hhhhhhhccccccccccccCCCccHHHHHHHHHHHcC
Confidence              11  1246999999877777778888777665444

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.97  E-value=3.2e-11  Score=110.34  Aligned_cols=95  Identities=15%  Similarity=0.189  Sum_probs=74.1

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      +++++||+++||.          .++++++++++.+|++++|+|++||||||+.+.|++.+    |..++++.++.....
T Consensus         4 iL~v~nlsk~yg~----------~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~   73 (254)
T d1g6ha_           4 ILRTENIVKYFGE----------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP   73 (254)
T ss_dssp             EEEEEEEEEEETT----------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH
T ss_pred             eEEEEEEEEEECC----------eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhH
Confidence            6899999999997          56788888999999999999999999999999999976    777888887753322


Q ss_pred             c--cccccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778         78 I--DKMSAKQPLNDEDRRPWLNNINRIIHQL  106 (433)
Q Consensus        78 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (433)
                      .  .....++.||+....+.++..+++....
T Consensus        74 ~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~  104 (254)
T d1g6ha_          74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGE  104 (254)
T ss_dssp             HHHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred             HHHHHhcCCccCCccccCCCCeeeeeeeehh
Confidence            2  2233567788776666666666665543

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=6.1e-11  Score=116.38  Aligned_cols=144  Identities=28%  Similarity=0.393  Sum_probs=108.9

Q ss_pred             CceEEecCCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHc-CCcEEEE------eeeecccCccccc-----
Q psy16778        282 GIYILSTISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKA-GYKALVL------TVDTNVFGTRYAD-----  349 (433)
Q Consensus       282 ~~~~~s~~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~a-g~~~i~l------tvD~~~~G~r~~~-----  349 (433)
                      .|-+-...+..+||.+|+...+...|-|+...+++|.+...|+.|... .+..-++      ++.+.++|++.+-     
T Consensus        19 ~~~~~~~~~~~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~aFd~i~l~Pr~L~dvs~iDlst~~lG~~l~~P~~Is   98 (414)
T d1kbia1          19 LPPLDNIINLYDFEYLASQTLTKQAWAYYSSGANDEVTHRENHNAYHRIFFKPKILVDVRKVDISTDMLGSHVDVPFYVS   98 (414)
T ss_dssp             CCCGGGCCSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHGGGGCEECCCCSCCCSSCBCCEEETTEEESSSEEEC
T ss_pred             CCChhhcCCHHHHHHHHHHhCCHHHHHHHhccccchHHHHHHHHHHHhceeeccccCCCcCCCCceeECCccCCCCEEEC
Confidence            344445567789999999888888999999999999999888877544 3444333      2336667765531     


Q ss_pred             ---------------------cccccCC------CccchHHHHHhhCCC--cchhhhhhccCCHHHHHHHHHHHHHcCCc
Q psy16778        350 ---------------------IRNKFNM------PSHLNIEELAEKTPQ--TTKWFQLYIYRDREITKSLVQRAEKAGYK  400 (433)
Q Consensus       350 ---------------------~~~~~~~------~~~~s~e~i~~~~~~--~~~w~Qly~~~~~~~~~~~~~ra~~~G~~  400 (433)
                                           ......+      .+..+++++.+.++.  ...|||+|++.++..+..++++++++|++
T Consensus        99 p~g~~~~~~~~~~~~~~A~a~aa~~~~~~~~ls~~~~~~~~~~~~~a~~~~~~~~~q~y~~~~~~~~~~l~~ra~~ag~~  178 (414)
T d1kbia1          99 ATALCKLGNPLEGEKDVARGCGQGVTKVPQMISTLASCSPEEIIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVK  178 (414)
T ss_dssp             CCSCGGGTCTTTTHHHHHHHHHSSSSCCCEEECTTCSSCHHHHHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred             hhhhhcccCcchhHHHHHhhHHHhhhccccccccccccchHHHHHHhcCCccchhhcccccccHHHHHHHHHHHHHcCCc
Confidence                                 0011112      244578888877543  45799999999999999999999999999


Q ss_pred             EEEEecCCCCCCCchhhhhcCCCCC
Q psy16778        401 ALVLTVDTNVFGTRYADIRNKFNMP  425 (433)
Q Consensus       401 aivlTvD~~~~g~r~~~~r~~~~~~  425 (433)
                      ++++|+|+|+.|+||+|.++.+..+
T Consensus       179 al~~tvD~~~~g~re~d~~~~~~~~  203 (414)
T d1kbia1         179 ALFVTVDAPSLGQREKDMKLKFSNT  203 (414)
T ss_dssp             CEEEECSCSSCCCCHHHHHHHHTTC
T ss_pred             ccccccccccccccHHHHHhccccc
Confidence            9999999999999999999876544

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.88  E-value=8.7e-11  Score=107.38  Aligned_cols=95  Identities=15%  Similarity=0.200  Sum_probs=71.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      .+++.||++.||.          ..+++++++++.+|++++|+|++||||||+++.|++.+    |..++++.++.....
T Consensus         2 ~Lev~nl~k~yg~----------~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~   71 (258)
T d1b0ua_           2 KLHVIDLHKRYGG----------HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRD   71 (258)
T ss_dssp             CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEEC
T ss_pred             eEEEEEEEEEECC----------EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCc
Confidence            3789999999987          34677777999999999999999999999999999866    667787776632100


Q ss_pred             --------------ccccccCCCCCCcCChhHHHHHHHHHHHh
Q psy16778         78 --------------IDKMSAKQPLNDEDRRPWLNNINRIIHQL  106 (433)
Q Consensus        78 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (433)
                                    ......|+.||++...+.++..+++....
T Consensus        72 ~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~  114 (258)
T d1b0ua_          72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP  114 (258)
T ss_dssp             TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred             cchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhH
Confidence                          01123578888877666666667766553

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.87  E-value=7.7e-11  Score=106.68  Aligned_cols=93  Identities=13%  Similarity=0.168  Sum_probs=68.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      +++++||++.||.          ..+++++++++.+|++++|+|++||||||+.+.|++.+    |...+++.++.....
T Consensus         6 ~Lev~~l~k~yg~----------~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~   75 (240)
T d1ji0a_           6 VLEVQSLHVYYGA----------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA   75 (240)
T ss_dssp             EEEEEEEEEEETT----------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH
T ss_pred             EEEEeeEEEEECC----------EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccH
Confidence            6899999999997          55777888999999999999999999999999999976    777888887754322


Q ss_pred             ccccc--cCCCCCCcCChhHHHHHHHHHH
Q psy16778         78 IDKMS--AKQPLNDEDRRPWLNNINRIIH  104 (433)
Q Consensus        78 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~  104 (433)
                      .....  .++.+++....+.++..+++..
T Consensus        76 ~~~~r~gi~~~~q~~~l~~~ltv~en~~~  104 (240)
T d1ji0a_          76 HVINRMGIALVPEGRRIFPELTVYENLMM  104 (240)
T ss_dssp             HHHHHTTEEEECSSCCCCTTSBHHHHHHG
T ss_pred             HHHHHhcccccCcccccCCcccHHHHHHH
Confidence            22222  3345555444555555555443

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=2.7e-08  Score=86.51  Aligned_cols=152  Identities=14%  Similarity=0.100  Sum_probs=76.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCeEE--eCCCCCccccccccccCCCCCCcCChhHHHH-------------------H
Q psy16778         41 FVIMGVSGSGKSTIGESLATRLGVKFI--DGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN-------------------I   99 (433)
Q Consensus        41 I~l~G~~GsGKSTla~~La~~lg~~~i--d~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~   99 (433)
                      |+|+|||||||||+++.|.+.++..+.  -....+......  ..|..+..-....+...                   .
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~   80 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTS   80 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCC--ccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecc
Confidence            789999999999999999998864332  111111111000  11111111111111111                   1


Q ss_pred             HHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHH----hhccCC
Q psy16778        100 NRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQF----QTLEEP  173 (433)
Q Consensus       100 ~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~----~~~~~~  173 (433)
                      .+.+......|..++++...   .....++....  ..++++..+.+++.+|+.+|+..  ..+.+...+    ..+...
T Consensus        81 ~~~v~~~~~~g~~~~~~~~~---~~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~~~--~~e~i~~rl~~~~~~~~~~  155 (190)
T d1lvga_          81 KEAVRAVQAMNRICVLDVDL---QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTE--TEESLAKRLAAARTDMESS  155 (190)
T ss_dssp             HHHHHHHHHTTCEEEEECCH---HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHTTGG
T ss_pred             cchhhhhhcCCCceeecchH---hhhhhhhhccccceEEEEecchHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHhh
Confidence            22244556677777776653   33344554443  44555566689999999998642  233333322    211111


Q ss_pred             CCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        174 DPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       174 ~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      .. ....+++|.++ +.++...++.+.+
T Consensus       156 ~~-~~~fd~iI~N~-dle~a~~~l~~iI  181 (190)
T d1lvga_         156 KE-PGLFDLVIIND-DLDKAYATLKQAL  181 (190)
T ss_dssp             GS-TTTCSEEEECS-SHHHHHHHHHHHT
T ss_pred             hh-cCCCCEEEECc-CHHHHHHHHHHHH
Confidence            10 11134555554 5677766665443

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=1.6e-10  Score=104.38  Aligned_cols=86  Identities=16%  Similarity=0.117  Sum_probs=64.3

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCcccc
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQSN   77 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~~   77 (433)
                      |+.+.||++.||.          .+.++++++++.+|++++|+|++||||||+.+.|++.+    |...+++.++.....
T Consensus         2 aI~v~nl~k~yg~----------~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~   71 (238)
T d1vpla_           2 AVVVKDLRKRIGK----------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH   71 (238)
T ss_dssp             CEEEEEEEEEETT----------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHH
T ss_pred             CEEEEeEEEEECC----------EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChH
Confidence            6789999999997          45777788999999999999999999999999999976    667787776654322


Q ss_pred             ccccccCCCCCCcCChhHHH
Q psy16778         78 IDKMSAKQPLNDEDRRPWLN   97 (433)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~   97 (433)
                      ......++.++.......++
T Consensus        72 ~~~~~i~~vpq~~~~~~~lt   91 (238)
T d1vpla_          72 EVRKLISYLPEEAGAYRNMQ   91 (238)
T ss_dssp             HHHTTEEEECTTCCCCTTSB
T ss_pred             HHHhhEeEeeeccccCCCcc
Confidence            22233466666644333333

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=1.8e-08  Score=87.31  Aligned_cols=151  Identities=13%  Similarity=0.113  Sum_probs=77.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCeE--EeCCCCCccccccccccCCCCCCcCChhHHHH-------------------H
Q psy16778         41 FVIMGVSGSGKSTIGESLATRLGVKF--IDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN-------------------I   99 (433)
Q Consensus        41 I~l~G~~GsGKSTla~~La~~lg~~~--id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~   99 (433)
                      |+|+||||||||||++.|.+.+...+  ......+......  ..|..+..-....+...                   .
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~   81 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST   81 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCC--cCCccceeccHHHHHHHHhcccceeeeEEccceeecc
Confidence            88999999999999999999874222  1111111110000  01111111111111111                   1


Q ss_pred             HHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC---eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHH----hhccC
Q psy16778        100 NRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR---VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQF----QTLEE  172 (433)
Q Consensus       100 ~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~---~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~----~~~~~  172 (433)
                      ...+......|..+|++...   .....+++..+   ..++++..+.+++.+|+.+|+..  ..+.+...+    ..+..
T Consensus        82 ~~~i~~~~~~g~~~i~~~~~---~~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~~--~~~~I~~Rl~~~~~e~~~  156 (186)
T d1gkya_          82 VASVKQVSKSGKTCILDIDM---QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTE--TEESINKRLSAAQAELAY  156 (186)
T ss_dssp             HHHHHHHHHHTSEEEEECCH---HHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHSCS--CHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHhcCCCeEEecchH---HHHHHHHHhhcccceEEEecCCcHHHHHHHHHhhccc--hhHHHHHHHHHHHHHHHh
Confidence            23344555567677777653   33344554322   56777888899999999999642  223332222    11111


Q ss_pred             CCCCCCCCeEEEccCCCHHHHHHHHhcCC
Q psy16778        173 PDPLVEPDVRTVSVNEPLEGIVSKSAIMP  201 (433)
Q Consensus       173 ~~~~~~~~~~~Id~~~~~ee~~~~i~~~l  201 (433)
                      ..  ....+++|.++ +.++...++.+.+
T Consensus       157 ~~--~~~fd~vI~N~-dle~a~~~l~~iI  182 (186)
T d1gkya_         157 AE--TGAHDKVIVND-DLDKAYKELKDFI  182 (186)
T ss_dssp             HT--TTCSSEEEECS-SHHHHHHHHHHHH
T ss_pred             hh--hcCCCEEEECc-CHHHHHHHHHHHH
Confidence            11  11134556553 6777777776543

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=1.3e-08  Score=89.59  Aligned_cols=114  Identities=14%  Similarity=0.103  Sum_probs=64.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC---CeEEeCCCCCccccccccccCCCCCCcCChhHHHH---------------
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLG---VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNN---------------   98 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg---~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------   98 (433)
                      +|++|+|+||||||||||.+.|.+...   +.+.-+...+.......-...+-|-.  ...+...               
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs--~~~F~~~i~~g~flE~~~~~g~   78 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVN--HDEFKEMISRDAFLEHAEVFGN   78 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECC--HHHHHHHHHTTCEEEEEEETTE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeec--HHHHHHHhhhhhheeEEEECCc
Confidence            588999999999999999999998763   22222222221111111011122211  1122111               


Q ss_pred             ----HHHHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhC
Q psy16778         99 ----INRIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAE  155 (433)
Q Consensus        99 ----~~~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~  155 (433)
                          -.+.+...+.+|..+|++...   .....+++...  ..++++..+.+++.+|+.+|+.
T Consensus        79 ~YGt~~~~v~~~~~~g~~~ildid~---~g~~~lk~~~~~~~~ifi~pps~~~l~~RL~~Rg~  138 (205)
T d1s96a_          79 YYGTSREAIEQVLATGVDVFLDIDW---QGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQ  138 (205)
T ss_dssp             EEEEEHHHHHHHHTTTCEEEEECCH---HHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSC
T ss_pred             eeccccchHHHHHhcCCceeecCcH---HHHHHHHhhhcccceeeeeccchHHHHHHHHhcCC
Confidence                123355667788888888764   22233444333  3455567778899999999964

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.77  E-value=2.9e-08  Score=87.12  Aligned_cols=64  Identities=13%  Similarity=-0.053  Sum_probs=40.0

Q ss_pred             eEEEEEEcCHHHHHHHHHHhhCCCC---------CHHhHHHHHhhccCCCC-CCCCCeEEEccCCCHHHHHHHH
Q psy16778        134 VVFIYLKAEFGVILSRLQKRAEHFM---------PADLLESQFQTLEEPDP-LVEPDVRTVSVNEPLEGIVSKS  197 (433)
Q Consensus       134 ~~vv~L~~~~e~l~~Rl~~R~~~~~---------~~~~l~~~~~~~~~~~~-~~~~~~~~Id~~~~~ee~~~~i  197 (433)
                      .++|||++++++..+|+.+|++...         ..+.++...+.+.++.. .....-++||.+.+++++.++|
T Consensus       134 d~~i~L~~~~e~~~~Ri~~R~~~~~~~~~d~~e~~~~y~~~~~~~Y~~~~~~~~~~~~~vIDa~~~~e~V~~~i  207 (208)
T d1gsia_         134 DWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATL  207 (208)
T ss_dssp             SEEEEECCCHHHHHHHHHHHHHHCTTCCCCTTTTCHHHHHHHHHHHHHHHHHTTTSEEEEECTTCCHHHHHHHH
T ss_pred             ceeEEecccHHHHHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHhh
Confidence            7899999999999999999863211         12222222222222110 0111358899999999999876

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.72  E-value=1.4e-09  Score=98.27  Aligned_cols=80  Identities=24%  Similarity=0.120  Sum_probs=59.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc-
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS-   76 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~-   76 (433)
                      ++++.||+|.|+...         ..++++++++.+|.+++|+|++||||||+++.|++.+    |-..+++.++.... 
T Consensus         1 mle~knvsf~Y~~~~---------~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~   71 (242)
T d1mv5a_           1 MLSARHVDFAYDDSE---------QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL   71 (242)
T ss_dssp             CEEEEEEEECSSSSS---------CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC
T ss_pred             CEEEEEEEEECCCCC---------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccH
Confidence            578999999996521         2466777999999999999999999999999999876    77888877664311 


Q ss_pred             cccccccCCCCCCc
Q psy16778         77 NIDKMSAKQPLNDE   90 (433)
Q Consensus        77 ~~~~~~~~~~~~~~   90 (433)
                      .......++.+|++
T Consensus        72 ~~~r~~i~~v~Q~~   85 (242)
T d1mv5a_          72 ENWRSQIGFVSQDS   85 (242)
T ss_dssp             SCCTTTCCEECCSS
T ss_pred             HHHHhheEEEcccc
Confidence            11122346677764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=3.7e-08  Score=86.40  Aligned_cols=113  Identities=17%  Similarity=0.164  Sum_probs=63.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC-----CeEEeCCCCCccccccccccCCCCCCcCChhHHH--------HHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLG-----VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLN--------NINRIIH  104 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg-----~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  104 (433)
                      |.+|+|+|.|||||||+++.|++.++     ...++.|.++......  .....+..........        .+...+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKT--YKSFEFFLPDNEEGLKIRKQCALAALNDVRK   79 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCS--CCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccc--cccccccccccccchhhHHHHHHHHHHHHHH
Confidence            57899999999999999999999884     3467777654221100  0000111111111111        1222222


Q ss_pred             Hhhh-CCCcEEEEcCcccHHHHHHHHh----cCC-eEEEEEEcCHHHHHHHHHH
Q psy16778        105 QLNV-DNLTGVLVCSALRRNYRDIIRN----NNR-VVFIYLKAEFGVILSRLQK  152 (433)
Q Consensus       105 ~~~~-~~~~~Vi~~~~~~~~~~~~l~~----~~~-~~vv~L~~~~e~l~~Rl~~  152 (433)
                      .+.. .+..+|+++.......+..+.+    ... .+++++.++.+.+.++...
T Consensus        80 ~~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (213)
T d1bifa1          80 FLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIV  133 (213)
T ss_dssp             HHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHH
T ss_pred             HHHhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHhHH
Confidence            2332 3455677877766666554443    333 5677778887777665543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=3.7e-09  Score=96.07  Aligned_cols=65  Identities=25%  Similarity=0.223  Sum_probs=53.0

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      +++++||++.|+...       +...++++++++++|.+++|+|++||||||+++.|.+.+    |..++++-++.
T Consensus        11 ~I~~~nvsf~Y~~~~-------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~   79 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRP-------DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLP   79 (251)
T ss_dssp             CEEEEEEEECCTTST-------TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG
T ss_pred             eEEEEEEEEECCCCC-------CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecc
Confidence            478999999997522       123566777999999999999999999999999999876    66778777664

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.57  E-value=7.8e-08  Score=82.03  Aligned_cols=35  Identities=23%  Similarity=0.176  Sum_probs=31.8

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL   72 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~   72 (433)
                      .+.|+|+|++||||||+++.|++++|.+++..+..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~   41 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGR   41 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehH
Confidence            37899999999999999999999999999977653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.57  E-value=8.2e-09  Score=93.80  Aligned_cols=64  Identities=20%  Similarity=0.163  Sum_probs=51.9

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      .++++||++.|+....        ..++++++++.+|..++|+|++||||||+++.|.+.+    |...+++-++.
T Consensus        13 ~I~~~nvsf~Y~~~~~--------~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~   80 (253)
T d3b60a1          13 DLEFRNVTFTYPGREV--------PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLR   80 (253)
T ss_dssp             CEEEEEEEECSSSSSC--------CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETT
T ss_pred             EEEEEEEEEEeCCCCC--------ceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccc
Confidence            3788999999976442        2455666999999999999999999999999999866    66677766553

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.56  E-value=9.8e-09  Score=91.91  Aligned_cols=90  Identities=20%  Similarity=0.198  Sum_probs=66.7

Q ss_pred             CccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCCccc
Q psy16778          1 MAVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLHPQS   76 (433)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~~~~   76 (433)
                      |.+++ ++.+.||...          .  +++++.. +.+++|+|++||||||+.+.|++.+    |..++++.++....
T Consensus         1 m~l~v-~~~k~~g~~~----------~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~   66 (240)
T d2onka1           1 MFLKV-RAEKRLGNFR----------L--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP   66 (240)
T ss_dssp             CCEEE-EEEEEETTEE----------E--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC
T ss_pred             CEEEE-EEEEEECCEE----------E--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCC
Confidence            67788 6899998711          1  3446665 4689999999999999999999977    77788887775432


Q ss_pred             cccccccCCCCCCcCChhHHHHHHHHHHH
Q psy16778         77 NIDKMSAKQPLNDEDRRPWLNNINRIIHQ  105 (433)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (433)
                      . .....|+.||+....+.++..+++...
T Consensus        67 ~-~~r~ig~v~Q~~~l~~~ltV~enl~~~   94 (240)
T d2onka1          67 P-ERRGIGFVPQDYALFPHLSVYRNIAYG   94 (240)
T ss_dssp             T-TTSCCBCCCSSCCCCTTSCHHHHHHTT
T ss_pred             H-HHcCceeeccchhhcccchhhHhhhhh
Confidence            2 233578999998777777777776654

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=8.4e-09  Score=92.94  Aligned_cols=63  Identities=25%  Similarity=0.208  Sum_probs=51.6

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      ++++||++.|.....        ..++++++++.+|..++|+|++||||||+++.|.+.+    |...+++-++.
T Consensus         2 I~~~nvsf~Y~~~~~--------~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~   68 (241)
T d2pmka1           2 ITFRNIRFRYKPDSP--------VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA   68 (241)
T ss_dssp             EEEEEEEEESSTTSC--------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred             eEEEEEEEEeCCCCc--------ceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEec
Confidence            578999999965332        2456677999999999999999999999999999976    66777776664

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.55  E-value=1.3e-07  Score=82.06  Aligned_cols=35  Identities=26%  Similarity=0.249  Sum_probs=30.5

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFID   68 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id   68 (433)
                      +.++|++|+|.|..||||||+++.|++.++...+.
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~~   39 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLL   39 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence            46788999999999999999999999998765553

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.54  E-value=2.2e-08  Score=95.76  Aligned_cols=136  Identities=29%  Similarity=0.438  Sum_probs=103.6

Q ss_pred             CCCCCHHHHHHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEE-----------eeeecccCccccc--------
Q psy16778        289 ISTTSIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVL-----------TVDTNVFGTRYAD--------  349 (433)
Q Consensus       289 ~s~~~~eeva~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~l-----------tvD~~~~G~r~~~--------  349 (433)
                      ++..++|++|+...+...|.|+..+.+++.+...|+.+    |..+-+           ++.+.++|++..-        
T Consensus         3 ~~~~d~~~~a~~~~p~~~~~y~~~ga~~~~t~~~N~~a----Fd~i~l~pr~L~d~~~idlst~~lGk~ls~Pi~Iapmt   78 (353)
T d1p4ca_           3 FNVEDYRKLAQKRLPKMVYDYLEGGAEDEYGVKHNRDV----FQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTG   78 (353)
T ss_dssp             SSHHHHHHHHHHHSCHHHHHHHHCCSTTCHHHHHHHHG----GGGEEECCCCSCCCSSCBCCEEETTEEESSSEEECCCS
T ss_pred             CCHHHHHHHHHHhCCHHHHHHHhccccchHHHHHHHHH----HHhCcEEcccccCCCCCCCceEECCcCccCceeecccc
Confidence            45678999998877788999999999999998887766    444443           3447778887651        


Q ss_pred             ---------------cccccCC------CccchHHHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCC
Q psy16778        350 ---------------IRNKFNM------PSHLNIEELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDT  408 (433)
Q Consensus       350 ---------------~~~~~~~------~~~~s~e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~  408 (433)
                                     ....+.+      .+..+++++.+.+.. ..|+|.| ..+...+..++++++.+|++++++|+|.
T Consensus        79 gg~~~~~~~n~~lA~aA~~~~i~~~~gs~s~~~~~e~~~~~~~-~~~~~~~-~~~~~~~~~l~~~~~~~g~~~l~~~vd~  156 (353)
T d1p4ca_          79 LNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDG-DLWFQLY-VIHREIAQGMVLKALHTGYTTLVLTTDV  156 (353)
T ss_dssp             CGGGTSTTHHHHHHHHHHHHTCCEEECTTCSSCHHHHHHHCCS-CEEEEEC-CSSHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             ccccccchhhHHHHHHHHHhhccccccccccccchhHHHhcCC-ceeeeec-cccHHHHHHhHHHHHHcCCcceeeeccc
Confidence                           1111222      245577888887653 4555544 5688899999999999999999999999


Q ss_pred             CCCCCchhhhhcCCCCCCCCCC
Q psy16778        409 NVFGTRYADIRNKFNMPSHLKE  430 (433)
Q Consensus       409 ~~~g~r~~~~r~~~~~~~~~~~  430 (433)
                      |..|.|++|.++++..|.....
T Consensus       157 ~~~g~~~~d~~~~~~~~~~~~~  178 (353)
T d1p4ca_         157 AVNGYRERDLHNRFKIPPFLTL  178 (353)
T ss_dssp             SSCCCCHHHHHHTCCCCTTCCC
T ss_pred             cccCcchhhhhhhhcccchhhh
Confidence            9999999999999988876543

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.2e-07  Score=83.08  Aligned_cols=68  Identities=24%  Similarity=0.202  Sum_probs=43.7

Q ss_pred             eEEEEEEcCHHHHHHHHHHhhCCCC---CHHhHH---HHHhhccCCCC-------CCCCCeEEEccCCCHHHHHHHHhcC
Q psy16778        134 VVFIYLKAEFGVILSRLQKRAEHFM---PADLLE---SQFQTLEEPDP-------LVEPDVRTVSVNEPLEGIVSKSAIM  200 (433)
Q Consensus       134 ~~vv~L~~~~e~l~~Rl~~R~~~~~---~~~~l~---~~~~~~~~~~~-------~~~~~~~~Id~~~~~ee~~~~i~~~  200 (433)
                      .++|||+++++++.+|+.+|+....   +.+-+.   ..++.+.....       ......++||++.+++++.++|.+.
T Consensus       154 dl~i~Ld~~pe~~~~Ri~~r~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ID~~~~ie~v~~~i~~~  233 (241)
T d1p5zb_         154 DGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEK  233 (241)
T ss_dssp             SEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHHHHH
T ss_pred             ceeeeeccCHHHHHHHHHhhcchhhhcCCHHHHHHHHHHHHHHHHHhhhhhhHhhcCCCCEEEEECCCCHHHHHHHHHHH
Confidence            6899999999999999988864321   222222   22222211110       1224568999889999999888765


Q ss_pred             C
Q psy16778        201 P  201 (433)
Q Consensus       201 l  201 (433)
                      +
T Consensus       234 i  234 (241)
T d1p5zb_         234 V  234 (241)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.49  E-value=4.4e-09  Score=91.31  Aligned_cols=29  Identities=34%  Similarity=0.437  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      ...+.+|+|+|++||||||+++.|++.++
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            44567899999999999999999999874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=2.1e-08  Score=88.87  Aligned_cols=38  Identities=29%  Similarity=0.440  Sum_probs=35.0

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCcc
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQ   75 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~   75 (433)
                      .++|+|.|||||||||+|+.|+++||++|++++++++.
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~   40 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV   40 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHH
Confidence            45999999999999999999999999999999988754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.46  E-value=1.3e-08  Score=92.35  Aligned_cols=64  Identities=17%  Similarity=0.130  Sum_probs=51.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCCC
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHLH   73 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~~   73 (433)
                      .++++||++.|+....        ..+.++++++++|.+++|+|++||||||+++.|.+.+    |...+++.++.
T Consensus        16 ~I~~~nvsf~Y~~~~~--------~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~   83 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEA--------PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIK   83 (255)
T ss_dssp             CEEEEEEEECSCSSSC--------CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGG
T ss_pred             EEEEEEEEEEeCCCCC--------cceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcc
Confidence            3788999999976332        2455666999999999999999999999999999866    66777776653

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=1e-06  Score=77.76  Aligned_cols=165  Identities=13%  Similarity=0.046  Sum_probs=72.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccc----cccccCC--CCCCcCChhHH--HH--HHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNI----DKMSAKQ--PLNDEDRRPWL--NN--INRIIHQ  105 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~----~~~~~~~--~~~~~~~~~~~--~~--~~~~~~~  105 (433)
                      .+|+.|+|.|+-||||||+++.|++.|.....-..........    .....+.  .+......-.+  ++  ....+..
T Consensus         1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~~i~~   80 (214)
T d1tmka_           1 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKK   80 (214)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEESSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999999999999984322211111000000    0000011  11110000011  01  1122445


Q ss_pred             hhhCCCcEEEEcCcccH-----------HHHHHHHhc---C-C-eEEEEEEcCHHHHHHHHHHhhCCCC-CHHhHHHHHh
Q psy16778        106 LNVDNLTGVLVCSALRR-----------NYRDIIRNN---N-R-VVFIYLKAEFGVILSRLQKRAEHFM-PADLLESQFQ  168 (433)
Q Consensus       106 ~~~~~~~~Vi~~~~~~~-----------~~~~~l~~~---~-~-~~vv~L~~~~e~l~~Rl~~R~~~~~-~~~~l~~~~~  168 (433)
                      .+..|..+|.|-...+.           .....+...   . . ++++||++++.+...|...|+.... ..+.++...+
T Consensus        81 ~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r~~~~~~~~~e~~~~~~~v~~  160 (214)
T d1tmka_          81 DLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEKVKQ  160 (214)
T ss_dssp             HHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC----------CCSSTTCCHHHHHHHHH
T ss_pred             HHhcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHHhcccchhhhhhHHHHHHHHH
Confidence            55667666666322110           011222221   1 1 7999999999988888665543222 2222222222


Q ss_pred             hccCCC----CCCCCCeEEEccC-CCHHHHHHHHhcC
Q psy16778        169 TLEEPD----PLVEPDVRTVSVN-EPLEGIVSKSAIM  200 (433)
Q Consensus       169 ~~~~~~----~~~~~~~~~Id~~-~~~ee~~~~i~~~  200 (433)
                      .+....    .......++||++ .+++++.+.|.+.
T Consensus       161 ~Y~~l~~~~~~~~~~~~~iID~s~~~~eev~~~I~~~  197 (214)
T d1tmka_         161 TFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQI  197 (214)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEECTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhCCCcEEEEECCCCCHHHHHHHHHHH
Confidence            111100    0011256788865 7899887666443

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.42  E-value=1.2e-08  Score=89.39  Aligned_cols=59  Identities=17%  Similarity=0.111  Sum_probs=49.5

Q ss_pred             cccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCeEEeCCCC
Q psy16778          3 VSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GVKFIDGDHL   72 (433)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~~~id~D~~   72 (433)
                      +++.||++.|+.           ..+.++++++++|.+++|+|++||||||+.+.+++.+    |...+++-++
T Consensus         3 lev~~ls~~y~~-----------~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i   65 (200)
T d1sgwa_           3 LEIRDLSVGYDK-----------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI   65 (200)
T ss_dssp             EEEEEEEEESSS-----------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred             EEEEEEEEEeCC-----------eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEeh
Confidence            678999999963           2466677999999999999999999999999999866    6667776554

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.1e-06  Score=78.49  Aligned_cols=34  Identities=21%  Similarity=0.152  Sum_probs=29.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGDH   71 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~   71 (433)
                      |+.|+|.|.-||||||+++.|++.++-..+....
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i~~ep   35 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEP   35 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEEECCC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCCcccc
Confidence            6799999999999999999999999766665443

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=9e-06  Score=69.25  Aligned_cols=26  Identities=27%  Similarity=0.529  Sum_probs=23.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +.+.|+|+|||||||||+.+.|.+..
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhC
Confidence            44679999999999999999999876

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.22  E-value=1.5e-06  Score=78.78  Aligned_cols=122  Identities=14%  Similarity=0.110  Sum_probs=67.4

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeCCCCCccccccc-ccc--CCCCCCcCChhHHHHHHHHHHHhh
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLATRL--GVKFIDGDHLHPQSNIDK-MSA--KQPLNDEDRRPWLNNINRIIHQLN  107 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~D~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~  107 (433)
                      .....|..|+|.|||||||||+++.|++.+  ++..+++|++........ ...  ...................+....
T Consensus        27 ~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (273)
T d1gvnb_          27 KAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLS  106 (273)
T ss_dssp             CCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHhccCcccchhhhHHHHHHHHhhccchHHHHHHHHH
Confidence            456677889999999999999999999998  445677777643211000 000  000000000000011111222333


Q ss_pred             hCCCcEEEEcCcccHH----HHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhh
Q psy16778        108 VDNLTGVLVCSALRRN----YRDIIRNNNR-VVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus       108 ~~~~~~Vi~~~~~~~~----~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      ..+.+.+++.+.....    ....+...+. ..+.+++.+.+....|...|.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~R~  158 (273)
T d1gvnb_         107 DQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERY  158 (273)
T ss_dssp             HHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred             hhCCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHHhcCC
Confidence            3455667776553322    2333444433 567778899999988887764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=1.2e-07  Score=84.74  Aligned_cols=46  Identities=22%  Similarity=0.171  Sum_probs=38.7

Q ss_pred             ccccccceeeeccCCccceeeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778          2 AVSNFGNWRYWGMWPPQYVVTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .+++.||++.|              .++++++++++|++++|+|++||||||+.+.|++.
T Consensus         3 il~~~dv~~~~--------------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_           3 VMQLQDVAEST--------------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEEEEEECCTT--------------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECcccCc--------------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            46777776554              46667789999999999999999999999999874

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=2.1e-06  Score=79.55  Aligned_cols=41  Identities=27%  Similarity=0.304  Sum_probs=34.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CeEEeCCCCCcc
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG-------VKFIDGDHLHPQ   75 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg-------~~~id~D~~~~~   75 (433)
                      .+.+.+|+|.|++||||||+++.|...+.       +.++++|.++..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~~  124 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP  124 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeECC
Confidence            35678999999999999999999999873       457999999753

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=98.01  E-value=6.5e-05  Score=56.63  Aligned_cols=141  Identities=16%  Similarity=0.197  Sum_probs=85.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcEEEEcCc
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTGVLVCSA  119 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~~~~  119 (433)
                      .|++.||-.|=|||++..|++.+.++.+.+..+.-.      .       ...    +.+.+-... +....++||+...
T Consensus         2 liilegpdccfkstvaaklskelkypiikgssfela------k-------sgn----eklfehfnk-ladednviidrfv   63 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELA------K-------SGN----EKLFEHFNK-LADEDNVIIDRFV   63 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHHH------H-------HCH----HHHHHHHHH-HTTCCSEEEESCH
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCchhhhh------h-------ccC----HHHHHHHHh-hccccceeeehhh
Confidence            588999999999999999999999999877654210      0       011    112222222 2344577877322


Q ss_pred             ---------------ccHHHHHHHHhcCC--eEEEEEEcCHHHHHHHHHHhhCCCCCHHhHHHHHhhccCCCCCCCCCeE
Q psy16778        120 ---------------LRRNYRDIIRNNNR--VVFIYLKAEFGVILSRLQKRAEHFMPADLLESQFQTLEEPDPLVEPDVR  182 (433)
Q Consensus       120 ---------------~~~~~~~~l~~~~~--~~vv~L~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  182 (433)
                                     +.+.....+.+...  ..+|||++++.++.+|+.-|+........+...++.+.+.-.-......
T Consensus        64 ysnlvyakkfkdysilterqlrfiedkikakakvvylhadpsvikkrlrvrgdeyiegkdidsilelyrevmsnaglhty  143 (164)
T d2axpa1          64 YSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHTY  143 (164)
T ss_dssp             HHHHHHTTTBSSCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHTCSSCCSSHHHHHHHHHHHHHHTCSSCEE
T ss_pred             hhhhHHHhhcccceehhHHHHHHHHHHhhhheeEEEEecChHHHHHHhccccccccccCCHHHHHHHHHHHHhcCCceee
Confidence                           44555555544332  6899999999999999999986655433444443333221100111345


Q ss_pred             EEccC-CCHHHHHHHHh
Q psy16778        183 TVSVN-EPLEGIVSKSA  198 (433)
Q Consensus       183 ~Id~~-~~~ee~~~~i~  198 (433)
                      .-++. -+.+|+...|.
T Consensus       144 swdtgqwssdeiakdii  160 (164)
T d2axpa1         144 SWDTGQWSSDEIAKDII  160 (164)
T ss_dssp             EEETTTSCHHHHHHHHH
T ss_pred             ecccCCcchHHhhhhee
Confidence            55555 56677666553

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.99  E-value=4.4e-06  Score=76.32  Aligned_cols=39  Identities=31%  Similarity=0.572  Sum_probs=30.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---CC--eEEeCCCCCc
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL---GV--KFIDGDHLHP   74 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g~--~~id~D~~~~   74 (433)
                      .+..+|+|+|.|||||||+++.|.+.+   |+  .+|++|.++.
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr   45 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   45 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence            356799999999999999999998877   33  5899999874

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=1.4e-06  Score=80.01  Aligned_cols=36  Identities=19%  Similarity=0.212  Sum_probs=33.2

Q ss_pred             ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         27 TTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        27 ~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+.++++++.+|.+++|+|++||||||+.+.|++.+
T Consensus        51 vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            567788999999999999999999999999999866

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.80  E-value=3.4e-06  Score=75.36  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=30.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEe-CCCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFID-GDHL   72 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id-~D~~   72 (433)
                      .+|+|||..||||||+++.|++.+|+.+++ +|.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i   36 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPI   36 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHH
Confidence            589999999999999999999999999999 5544

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=6.3e-06  Score=64.57  Aligned_cols=28  Identities=7%  Similarity=0.067  Sum_probs=25.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++|-.|+++|.+||||||+|+.|...+
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            4688999999999999999999997766

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.78  E-value=6e-06  Score=69.71  Aligned_cols=25  Identities=36%  Similarity=0.648  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      |.|+|+|++||||||+++.+++.++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCC
Confidence            5799999999999999999999884

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=3.4e-05  Score=67.11  Aligned_cols=89  Identities=21%  Similarity=0.251  Sum_probs=52.4

Q ss_pred             CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCc----cccccccccCCCCCC-cCChhHHHHHHH
Q psy16778         32 SGEGSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHP----QSNIDKMSAKQPLND-EDRRPWLNNINR  101 (433)
Q Consensus        32 ~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~  101 (433)
                      +++.+.+.+|+|+|++|+||||....||.++     .+.++.+|.++-    +........+.++.. .........+.+
T Consensus         3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~   82 (211)
T d2qy9a2           3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFD   82 (211)
T ss_dssp             CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHH
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHH
Confidence            3556778899999999999999988899766     456788888762    211122233444422 122223334444


Q ss_pred             HHHHhhhCCC-cEEEEcCcc
Q psy16778        102 IIHQLNVDNL-TGVLVCSAL  120 (433)
Q Consensus       102 ~~~~~~~~~~-~~Vi~~~~~  120 (433)
                      .......++. -++||..+.
T Consensus        83 ~~~~a~~~~~d~ilIDTaGr  102 (211)
T d2qy9a2          83 AIQAAKARNIDVLIADTAGR  102 (211)
T ss_dssp             HHHHHHHTTCSEEEECCCCC
T ss_pred             HHHHHHHcCCCEEEeccCCC
Confidence            4443333343 455666663

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.71  E-value=4.1e-05  Score=66.76  Aligned_cols=43  Identities=28%  Similarity=0.431  Sum_probs=35.0

Q ss_pred             CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCC
Q psy16778         31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH   73 (433)
Q Consensus        31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~   73 (433)
                      +++..++|.+|+|+||+|+||||....||.++     .+.++.+|.++
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R   51 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR   51 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccc
Confidence            34556788899999999999999988888776     45678888875

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=1.5e-05  Score=66.46  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++|+|+|++|||||||++.|++.+
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            589999999999999999999876

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=97.61  E-value=3.2e-05  Score=71.95  Aligned_cols=24  Identities=29%  Similarity=0.228  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..|.|-|+.||||||+++.|++.+
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC--
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHh
Confidence            569999999999999999999876

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=97.48  E-value=0.00029  Score=65.50  Aligned_cols=26  Identities=35%  Similarity=0.437  Sum_probs=23.7

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      ...|+|-|+.||||||+++.|++.++
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhc
Confidence            36899999999999999999999873

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.47  E-value=0.00024  Score=61.48  Aligned_cols=38  Identities=24%  Similarity=0.421  Sum_probs=31.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH   73 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~   73 (433)
                      +++.+|+|+|++|+||||....||.++     .+.++..|..+
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R   50 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR   50 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            455788999999999999999899877     45688999876

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.42  E-value=0.00011  Score=63.82  Aligned_cols=38  Identities=32%  Similarity=0.509  Sum_probs=31.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLH   73 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~   73 (433)
                      .++.+|+|+|++|+||||....||.++     .+.++..|..+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R   46 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR   46 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccc
Confidence            467899999999999999988888876     44578888875

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=6e-05  Score=68.68  Aligned_cols=40  Identities=20%  Similarity=0.245  Sum_probs=32.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh--------CCeEEeCCCCCc
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL--------GVKFIDGDHLHP   74 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l--------g~~~id~D~~~~   74 (433)
                      .+++.+|+|.|++||||||++..|...+        .+.+++.|+++.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY~   71 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL   71 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCCC
Confidence            4567899999999999999998886654        346789999863

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=4.9e-05  Score=67.27  Aligned_cols=30  Identities=23%  Similarity=0.381  Sum_probs=27.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFID   68 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id   68 (433)
                      ..++|.||||+||||+++.|++.++..++.
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~~~~   65 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTNIHV   65 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCCccc
Confidence            468999999999999999999999888764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=3.5e-05  Score=64.69  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++|+|+|++||||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            469999999999999999999988

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=6.5e-05  Score=67.57  Aligned_cols=35  Identities=23%  Similarity=0.427  Sum_probs=29.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDG   69 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~   69 (433)
                      ...+..++|.||||||||++++.+|+.++.+++..
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i   76 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI   76 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEE
Confidence            34567899999999999999999999999887543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.37  E-value=0.00018  Score=62.49  Aligned_cols=86  Identities=16%  Similarity=0.188  Sum_probs=46.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCcc----ccccccccCCCCCC-cCChhHHHHHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQ----SNIDKMSAKQPLND-EDRRPWLNNINRIIH  104 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  104 (433)
                      .+.|.+|+|+||+|+||||....||.++     .+.++..|..+-.    ........+.++.. ...........+.+.
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~   88 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE   88 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHH
Confidence            4677899999999999999988888877     4567888887622    11122223444322 112222333333333


Q ss_pred             Hh-hhCCCcEEEEcCcc
Q psy16778        105 QL-NVDNLTGVLVCSAL  120 (433)
Q Consensus       105 ~~-~~~~~~~Vi~~~~~  120 (433)
                      .. ......++||..+.
T Consensus        89 ~~~~~~~d~IlIDTaGr  105 (211)
T d1j8yf2          89 KFLSEKMEIIIVDTAGR  105 (211)
T ss_dssp             HHHHTTCSEEEEECCCS
T ss_pred             HhhccCCceEEEecCCc
Confidence            33 33445567777663

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.34  E-value=5e-05  Score=67.97  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=29.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      ...|+|.||||||||++++.||+.++.+++..+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~   72 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC   72 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcccccccccc
Confidence            457999999999999999999999999988654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.30  E-value=8e-05  Score=66.61  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=29.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      .+..|+|.||||||||++++.+++.+|++++..+
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~   74 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITAS   74 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHcCCCEEEEE
Confidence            4467999999999999999999999999887644

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.28  E-value=6.8e-05  Score=66.39  Aligned_cols=33  Identities=27%  Similarity=0.470  Sum_probs=28.2

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      ...++|.||||+||||+++.+++.+++.+....
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~   67 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS   67 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEecc
Confidence            356889999999999999999999988765433

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=0.00012  Score=65.14  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=28.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFID   68 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id   68 (433)
                      .....++|.||||+||||+++.+|+.++..++.
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~   82 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE   82 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhhhhc
Confidence            344689999999999999999999999887653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.20  E-value=9.2e-05  Score=68.53  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=28.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      .+..|+|.||||||||.+|+.||+.++.+++..+
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~   81 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   81 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccchhccc
Confidence            4567889999999999999999999987754433

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.19  E-value=0.0001  Score=61.34  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++|+|+|.+||||||+...|..+|
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999877

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.15  E-value=0.0001  Score=71.60  Aligned_cols=36  Identities=25%  Similarity=0.425  Sum_probs=32.7

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL   72 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~   72 (433)
                      .+.+|+|+||+|||||-+++.||+.+++||+-.|..
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT   83 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT   83 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecc
Confidence            356999999999999999999999999999888765

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=97.14  E-value=0.00015  Score=67.40  Aligned_cols=26  Identities=23%  Similarity=0.386  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGV   64 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~   64 (433)
                      ..|+|-|..||||||+++.|++.++.
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            47999999999999999999998743

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00019  Score=64.77  Aligned_cols=36  Identities=25%  Similarity=0.434  Sum_probs=31.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      ...+..|+|.|++|+|||++++.+|..+|.+++..+
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~   73 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK   73 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEE
Confidence            345567999999999999999999999999987665

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00028  Score=63.33  Aligned_cols=35  Identities=26%  Similarity=0.460  Sum_probs=30.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      ..+.-|+|.||||||||++++.++..++.+++..+
T Consensus        36 ~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~   70 (258)
T d1e32a2          36 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN   70 (258)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEE
Confidence            34556999999999999999999999999987654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.87  E-value=0.00032  Score=61.51  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=23.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      +...++|+||+|+||||+++.+++.++
T Consensus        44 ~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          44 SMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            345789999999999999999999874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.79  E-value=0.00057  Score=64.33  Aligned_cols=36  Identities=22%  Similarity=0.277  Sum_probs=32.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      ..++..++|.||||+|||++++.|++.+|..+++..
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in  186 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN  186 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCS
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEE
Confidence            356679999999999999999999999999998753

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.75  E-value=0.014  Score=50.23  Aligned_cols=103  Identities=13%  Similarity=0.167  Sum_probs=57.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCcccc----------cc-cc-ccC-CCCCC----cCChhHHHH
Q psy16778         41 FVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQSN----------ID-KM-SAK-QPLND----EDRRPWLNN   98 (433)
Q Consensus        41 I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~~~----------~~-~~-~~~-~~~~~----~~~~~~~~~   98 (433)
                      ++|.|++|||||.++..++..+     .+.+++..++.....          .. .. ..+ ..+.+    .....+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~iDDi~~i~~~~~~~~~  118 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIE  118 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhhHHHHHhhccchhhhhhhhhcCchHHHHH
Confidence            8899999999999999999876     344555544321100          00 00 000 00111    122334445


Q ss_pred             HHHHHHHhhhCCCcEEEEcCc-------ccHHHHHHHHhcCCeEEEEEEcCHHHH
Q psy16778         99 INRIIHQLNVDNLTGVLVCSA-------LRRNYRDIIRNNNRVVFIYLKAEFGVI  146 (433)
Q Consensus        99 ~~~~~~~~~~~~~~~Vi~~~~-------~~~~~~~~l~~~~~~~vv~L~~~~e~l  146 (433)
                      +...+......+..+|+.+..       ..+..+..+...   .++-+..+.+++
T Consensus       119 lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g---~~~~i~p~d~~~  170 (213)
T d1l8qa2         119 FFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG---ILVEIELDNKTR  170 (213)
T ss_dssp             HHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS---EEEECCCCHHHH
T ss_pred             HHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCc---eEEEECCCcHHH
Confidence            566666667778778877643       234455555543   677777665543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.74  E-value=0.00062  Score=55.96  Aligned_cols=31  Identities=19%  Similarity=0.381  Sum_probs=28.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCe
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVK   65 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~   65 (433)
                      ..+|.+|+|.|.-||||||+.|.+++.+|+.
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            3567899999999999999999999999874

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.64  E-value=0.00062  Score=57.06  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=31.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH   73 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~   73 (433)
                      .+.-|+|+|+||+||||++-.|.++ |+.++.-|.+.
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~~~   48 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR-GHRLIADDRVD   48 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEEEE
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCeEE
Confidence            4678999999999999999999885 99998888664

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.0006  Score=59.65  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=22.4

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ...++|+||+|+||||+++.+++.+
T Consensus        33 ~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          33 LPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChHHHHHHHHHHH
Confidence            3458999999999999999999986

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.55  E-value=0.00067  Score=59.44  Aligned_cols=24  Identities=33%  Similarity=0.618  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++|+|+|++||||||+.+.|.+.+
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Confidence            479999999999999999998766

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.0055  Score=56.47  Aligned_cols=38  Identities=32%  Similarity=0.376  Sum_probs=29.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHL   72 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~   72 (433)
                      ..+..+|+|+|+|||||||+...|...+   |  +.++..|..
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDps   93 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS   93 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCc
Confidence            4567899999999999999999998866   3  345555543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.49  E-value=0.00078  Score=56.45  Aligned_cols=36  Identities=25%  Similarity=0.354  Sum_probs=31.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH   73 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~   73 (433)
                      .+.-|+|+|+||+||||++-.|.++ |+.++.-|.+.
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD~v~   49 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLINK-NHLFVGDDAIE   49 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEEEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc-CCceecCCeEE
Confidence            5678999999999999999998875 99988888664

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.47  E-value=0.00075  Score=58.79  Aligned_cols=26  Identities=35%  Similarity=0.396  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGV   64 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~   64 (433)
                      ..++|.||+|+||||+++.+++.++.
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             CeEEEECCCCCCchhhHHHHHHHHhc
Confidence            35889999999999999999998754

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.46  E-value=0.00087  Score=59.48  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=24.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+..++|.|++|+||||+++.|++.+
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999987

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.43  E-value=0.0015  Score=54.37  Aligned_cols=37  Identities=30%  Similarity=0.420  Sum_probs=31.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHLH   73 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~~   73 (433)
                      -.+.-|+|+|+||+||||++-.|.++ |..++.-|.+.
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~~~   49 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVE   49 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEE
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCeEE
Confidence            35678999999999999999888886 99988888764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0015  Score=60.16  Aligned_cols=32  Identities=28%  Similarity=0.562  Sum_probs=27.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVKFIDGD   70 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~~id~D   70 (433)
                      .+++++||+|+|||.+|+.||+.++.+++..|
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d   84 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFD   84 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred             eEEEEECCCcchhHHHHHHHHhhccCCeeEec
Confidence            37889999999999999999999988875444

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.23  E-value=0.00091  Score=59.02  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=22.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ...++|+||+|+||||+++.+++.+
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhh
Confidence            3468899999999999999999986

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.18  E-value=0.0013  Score=57.18  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      ..++|.||+|+||||+++.+++.++
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHHhh
Confidence            3588999999999999999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.06  E-value=0.0022  Score=59.12  Aligned_cols=28  Identities=36%  Similarity=0.407  Sum_probs=24.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ..+..+|+|+|+|||||||+...|.+.+
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            3456899999999999999999999865

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.03  E-value=0.002  Score=57.14  Aligned_cols=31  Identities=23%  Similarity=0.435  Sum_probs=26.8

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFI   67 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~i   67 (433)
                      .+..|+|.|++|+||||+++.+++.++..+.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~   58 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLPYI   58 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCCEE
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeE
Confidence            4568999999999999999999998876654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0067  Score=51.32  Aligned_cols=27  Identities=37%  Similarity=0.549  Sum_probs=24.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +...+++|+|+||.|||++...||+++
T Consensus        41 ~~k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCeEEEecCCcccHHHHHHHHHHH
Confidence            455689999999999999999999976

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.90  E-value=0.0029  Score=51.47  Aligned_cols=27  Identities=30%  Similarity=0.423  Sum_probs=23.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +.+...|+|+|.+|+|||||.+.+...
T Consensus         2 m~ke~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           2 MTREMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHhCC
Confidence            445578999999999999999988764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.89  E-value=0.0023  Score=51.69  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +.|+|+|.+||||||+...|...
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999998764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0062  Score=54.37  Aligned_cols=27  Identities=37%  Similarity=0.532  Sum_probs=23.8

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ....+++|+|+||+|||++...|++++
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHHHH
Confidence            445689999999999999999999976

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.77  E-value=0.0016  Score=58.07  Aligned_cols=23  Identities=26%  Similarity=0.507  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++|+|+||+||||+++.+++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            56678999999999999999987

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.69  E-value=0.023  Score=48.14  Aligned_cols=51  Identities=12%  Similarity=0.109  Sum_probs=29.8

Q ss_pred             HHHHHhhhCCCcEEEEcCcccHHHHHHHHhcCC-eEEEEEEcCHHHHHHHHHHhh
Q psy16778        101 RIIHQLNVDNLTGVLVCSALRRNYRDIIRNNNR-VVFIYLKAEFGVILSRLQKRA  154 (433)
Q Consensus       101 ~~~~~~~~~~~~~Vi~~~~~~~~~~~~l~~~~~-~~vv~L~~~~e~l~~Rl~~R~  154 (433)
                      ..+...+..|..++++....   ....+++... .++|||..+.-...+|+.+|.
T Consensus        89 ~~i~~~~~~gk~~lldid~~---g~~~lk~~~~~~i~IfI~pps~e~l~~l~kr~  140 (199)
T d1kjwa2          89 QSVREVAEQGKHCILDVSAN---AVRRLQAAHLHPIAIFIRPRSLENVLEINKRI  140 (199)
T ss_dssp             HHHHHHHHTTCEEEECCCTT---HHHHHHHTTCCCEEEEECCSSHHHHHHHCTTS
T ss_pred             eEEEehhcCCCcccccccch---HHhhhhhhccceeEEeeccccHHHHHhhhccc
Confidence            34555667788888876532   2223343333 578999987555455655443

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.63  E-value=0.0032  Score=59.04  Aligned_cols=35  Identities=26%  Similarity=0.511  Sum_probs=29.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDH   71 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~   71 (433)
                      .+..|+++||+|+|||-++|.||+.++.+++-.|.
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D~  101 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDA  101 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhcccceeehhh
Confidence            34569999999999999999999988777665443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.55  E-value=0.0049  Score=56.49  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=25.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC--Ce--EEeCCCCC
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLG--VK--FIDGDHLH   73 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg--~~--~id~D~~~   73 (433)
                      +++++|+||+|||.+++.||..+|  .+  .+++.++.
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~  162 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPL  162 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSS
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhh
Confidence            455689999999999999999985  43  35555543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0045  Score=52.41  Aligned_cols=28  Identities=21%  Similarity=0.277  Sum_probs=25.0

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +..|.++.|.|+|||||||++-.++...
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            5678999999999999999999998754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.45  E-value=0.0036  Score=51.72  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=21.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ++...|+|+|.+|||||||...|..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            5567899999999999999998865

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.28  E-value=0.0075  Score=52.46  Aligned_cols=37  Identities=11%  Similarity=0.214  Sum_probs=30.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDH   71 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~   71 (433)
                      +.++.++.|.|+|||||||++..++...     .+.+++.+.
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~   64 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE   64 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccC
Confidence            5688999999999999999999999875     344666553

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.28  E-value=0.0055  Score=50.46  Aligned_cols=26  Identities=23%  Similarity=0.395  Sum_probs=22.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ++...|+|+|.+||||||+...|...
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            45578999999999999999988763

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.0047  Score=50.15  Aligned_cols=24  Identities=38%  Similarity=0.491  Sum_probs=21.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      |..|+|+|.+|+|||||.+.|.+.
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            568999999999999999988753

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.22  E-value=0.017  Score=52.98  Aligned_cols=110  Identities=13%  Similarity=0.045  Sum_probs=55.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh--CCeEEeCCCCCccccccccccCCC-CCCcCChhHHHHHHHHHHHhhhCCCcEE
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRL--GVKFIDGDHLHPQSNIDKMSAKQP-LNDEDRRPWLNNINRIIHQLNVDNLTGV  114 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~l--g~~~id~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V  114 (433)
                      +..|+|+|+.||||||+.+.|....  ....+...+..+-. ... ..... .......    ...+.+...+...-+.|
T Consensus       166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~-l~~-~~~~~~~~~~~~~----~~~~ll~~~lR~~pd~i  239 (323)
T d1g6oa_         166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-FKH-HKNYTQLFFGGNI----TSADCLKSCLRMRPDRI  239 (323)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCC-CSS-CSSEEEEECBTTB----CHHHHHHHHTTSCCSEE
T ss_pred             CCCEEEEeeccccchHHHHHHhhhcccccceeeccchhhhh-ccc-ccccceeccccch----hHHHHHHHHhccCCCcc
Confidence            3469999999999999999999866  22222222221100 000 00000 0001111    12344555565555666


Q ss_pred             EEcCcccHHHHHHHHhcCC---eEEEEEEcC-HHHHHHHHHHh
Q psy16778        115 LVCSALRRNYRDIIRNNNR---VVFIYLKAE-FGVILSRLQKR  153 (433)
Q Consensus       115 i~~~~~~~~~~~~l~~~~~---~~vv~L~~~-~e~l~~Rl~~R  153 (433)
                      +.+--...+....++....   +.+-=++++ +.....|+...
T Consensus       240 ivgEiR~~ea~~~l~a~~tGh~g~~tT~Ha~s~~~a~~Rl~~l  282 (323)
T d1g6oa_         240 ILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANM  282 (323)
T ss_dssp             EESCCCSTHHHHHHHHHHTTCSCEEEEECCSSHHHHHHHHHHH
T ss_pred             cCCccCchhHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHh
Confidence            6553323333344443321   344455555 67788888654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.17  E-value=0.0059  Score=49.80  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ...|+|+|.+|||||||.+.|..
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHcC
Confidence            45799999999999999998865

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.17  E-value=0.0058  Score=49.12  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .|+|+|.+|+|||||...|.+.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998874

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.14  E-value=0.005  Score=51.92  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      +.|+|+|.+|+||||+.+.|.+
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHhcC
Confidence            4799999999999999999975

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.07  E-value=0.075  Score=48.09  Aligned_cols=154  Identities=16%  Similarity=0.127  Sum_probs=81.7

Q ss_pred             ceeeeCCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEec--------------------------------
Q psy16778        241 LVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILST--------------------------------  288 (433)
Q Consensus       241 ~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~--------------------------------  288 (433)
                      ++|+++|.++..||++|+-+..      ......+.+.++|.-++..-                                
T Consensus         1 Lsv~~~Gl~l~nPi~~Asg~~~------~~~~~~~~~~~~G~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~   74 (312)
T d1gtea2           1 ISVEMAGLKFINPFGLASAAPT------TSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSS   74 (312)
T ss_dssp             CCEEETTEEESSSEEECSSGGG------SSHHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSC
T ss_pred             CcEEECCEEcCCCcEECCcCCC------CCHHHHHHHHHcCCcEEEEeeecCCccccCCCCCcEEeccCCcccccccccc
Confidence            5899999999999999862222      12334555556665442211                                


Q ss_pred             ------CCCCCHH----HH---HHhCCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccC
Q psy16778        289 ------ISTTSIE----EL---AEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFN  355 (433)
Q Consensus       289 ------~s~~~~e----ev---a~~~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~  355 (433)
                            .++...+    ++   .+..+....-.......+.+--....+.++.+|+.++.+.+..|...... +.-..+.
T Consensus        75 ~~n~~g~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~-~~~~~~~  153 (312)
T d1gtea2          75 FLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGER-GMGLACG  153 (312)
T ss_dssp             EEECCCSCSSCHHHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC------SBGG
T ss_pred             ccccccccccchhhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCccccc-ccchhhh
Confidence                  1111122    22   22233333333444445555445677788889999999999877642211 1111010


Q ss_pred             CCccchHHHHH----hhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778        356 MPSHLNIEELA----EKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLT  405 (433)
Q Consensus       356 ~~~~~s~e~i~----~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlT  405 (433)
                      . ....+.++.    +.+ +.+.|..+-.  +-....++++.++++|+.+++++
T Consensus       154 ~-~~~~~~~i~~~v~~~~-~~pv~vKl~~--~~~~~~~i~~~~~~~g~~gi~~~  203 (312)
T d1gtea2         154 Q-DPELVRNICRWVRQAV-QIPFFAKLTP--NVTDIVSIARAAKEGGADGVTAT  203 (312)
T ss_dssp             G-CHHHHHHHHHHHHHHC-SSCEEEEECS--CSSCHHHHHHHHHHHTCSEEEEC
T ss_pred             h-hHHHHHHHHHHHhhcc-CCceeecccc--cchhHHHHHHHHHHhcccceEEE
Confidence            0 001123332    222 2344555432  22234678889999999999873

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.0039  Score=54.70  Aligned_cols=26  Identities=27%  Similarity=0.248  Sum_probs=22.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ...+++||||+++||||+.|.++-..
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHHH
Confidence            34789999999999999999987643

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.06  E-value=0.014  Score=53.29  Aligned_cols=36  Identities=28%  Similarity=0.453  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh---CC--eEEeCCCCCcc
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRL---GV--KFIDGDHLHPQ   75 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~l---g~--~~id~D~~~~~   75 (433)
                      +++++||+|+|||.+|+.||+.+   +.  ..+++..+...
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~   95 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK   95 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSS
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccc
Confidence            78899999999999999999987   33  34565555443

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.99  E-value=0.0054  Score=50.61  Aligned_cols=28  Identities=21%  Similarity=0.449  Sum_probs=22.9

Q ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         33 GEGSPSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        33 ~~~~~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      .+..+...|+|+|.+|+||||+...+..
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            3345667899999999999999997754

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.94  E-value=0.011  Score=53.09  Aligned_cols=38  Identities=29%  Similarity=0.420  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCC
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDH   71 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~   71 (433)
                      ..+++.+|+++|.=|+||||++..||..+   |  +..||.|.
T Consensus         4 ~~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp   46 (296)
T d1ihua1           4 LQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (296)
T ss_dssp             GSSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35678899999999999999999888877   4  45788884

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.0083  Score=52.29  Aligned_cols=28  Identities=14%  Similarity=0.209  Sum_probs=25.1

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      =+.+|.++.|.|+||||||+++-.++..
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3688899999999999999999999863

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.83  E-value=0.0048  Score=53.49  Aligned_cols=27  Identities=22%  Similarity=0.318  Sum_probs=23.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +..|.++.|.|+|||||||++-.++..
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            567899999999999999999888643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.76  E-value=0.0045  Score=57.17  Aligned_cols=23  Identities=39%  Similarity=0.517  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++|.|+||+||||+++.+++.|
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            68999999999999999999987

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.76  E-value=0.0072  Score=52.77  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=24.7

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +..|.++.|.|+|||||||++-.++...
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4678999999999999999999888753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.76  E-value=0.0084  Score=50.73  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +.|+|+|.+|||||||...|.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999999999999874

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.74  E-value=0.0081  Score=52.04  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ++...+|+|.||+|||||...|...
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcch
Confidence            5789999999999999999988654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.73  E-value=0.01  Score=49.35  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=23.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ...+..|+|+|.+|+|||||...|.+.
T Consensus         5 ~~~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           5 ITDAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            445678999999999999999888753

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.71  E-value=0.0071  Score=53.96  Aligned_cols=50  Identities=20%  Similarity=0.079  Sum_probs=34.4

Q ss_pred             eeeeecccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh----CC--eEEeCC
Q psy16778         21 VTLIMTTTLSPSGEGSPSTVFVIMGVSGSGKSTIGESLATRL----GV--KFIDGD   70 (433)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l----g~--~~id~D   70 (433)
                      .+.+...+++...=+.+|..++|.|+||+||||++..++-.+    |.  .+++.+
T Consensus        18 i~TG~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          18 LFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             CCCSCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             cCCCchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            334444455433336788999999999999999998888643    43  355554

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.01  Score=50.83  Aligned_cols=26  Identities=19%  Similarity=0.282  Sum_probs=23.3

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      +-.++|.|++|+||||+++.+++.+-
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            44699999999999999999999874

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.70  E-value=0.01  Score=53.25  Aligned_cols=25  Identities=32%  Similarity=0.484  Sum_probs=22.1

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ...+|+|.|+.|.||||+|+.+...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999998765

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.68  E-value=0.023  Score=53.76  Aligned_cols=112  Identities=14%  Similarity=0.115  Sum_probs=55.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhC---CeEEeCCCCCccccccccccCCCCCCcCChhHHHHHHHHHHHhhhCCCcE
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLG---VKFIDGDHLHPQSNIDKMSAKQPLNDEDRRPWLNNINRIIHQLNVDNLTG  113 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg---~~~id~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (433)
                      ..-.|+|+|+.||||||....+...+.   ..++...+-.+... .+.. ...........    ....+...+.+.-++
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~-~~~~-q~~v~~~~~~~----~~~~l~~~lR~dPDv  230 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI-DGIG-QTQVNPRVDMT----FARGLRAILRQDPDV  230 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC-SSSE-EEECBGGGTBC----HHHHHHHHGGGCCSE
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCccccc-CCCC-eeeecCCcCCC----HHHHHHHHHhhcCCE
Confidence            345899999999999999999988772   22333333222100 0000 00011111222    344566666665556


Q ss_pred             EEEcCcccHHHH-HHHHhcCCeEEEEE--EcC-HHHHHHHHHHhh
Q psy16778        114 VLVCSALRRNYR-DIIRNNNRVVFIYL--KAE-FGVILSRLQKRA  154 (433)
Q Consensus       114 Vi~~~~~~~~~~-~~l~~~~~~~vv~L--~~~-~e~l~~Rl~~R~  154 (433)
                      |+.+--...+.. ..+.....+..|+-  +++ .-....|+....
T Consensus       231 i~igEiRd~~ta~~a~~aa~tGhlV~tTlHa~~a~~~~~Rl~~~~  275 (401)
T d1p9ra_         231 VMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMG  275 (401)
T ss_dssp             EEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHT
T ss_pred             EEecCcCChHHHHHHHHHHhcCCeEEEEeccCchHhhhhhhhhcc
Confidence            655443333332 23322211234443  333 556677777654

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.66  E-value=0.01  Score=51.92  Aligned_cols=27  Identities=30%  Similarity=0.539  Sum_probs=23.6

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778         38 STVFVIMGVSGSGKSTIGESLATRLGV   64 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~~lg~   64 (433)
                      +..++|.|++|+||||+++.+++.++.
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            346899999999999999999998843

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.65  E-value=0.0091  Score=49.01  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .|+|+|.+|+||||+.+.|.+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999998753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.50  E-value=0.011  Score=50.28  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +.|+|+|++||||||+...|...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999988763

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.0097  Score=51.55  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++|+|.-||||||+.+.+.+..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhcC
Confidence            588999999999999999988754

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.27  E-value=0.036  Score=51.97  Aligned_cols=26  Identities=38%  Similarity=0.572  Sum_probs=22.5

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+.+++|+|+||+|||++...||.++
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHHHHHH
Confidence            44567899999999999999999876

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.25  E-value=0.01  Score=49.12  Aligned_cols=21  Identities=33%  Similarity=0.382  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~   60 (433)
                      .|+|+|.+|+|||||...|.+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.015  Score=47.71  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=21.3

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      .+.-.|+|+|.+|+|||||.+.+..
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHh
Confidence            3445799999999999999998876

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.22  E-value=0.014  Score=47.43  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|++|+||||+...+..
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            4689999999999999998876

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.20  E-value=0.011  Score=48.80  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|.+|+||||+.+.|.+.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            37999999999999999998764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.20  E-value=0.014  Score=47.50  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|.+|+||||+...+..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998875

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.0089  Score=49.34  Aligned_cols=25  Identities=24%  Similarity=0.310  Sum_probs=21.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      .....|+|+|.+++|||||.+.|.+
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            4457899999999999999998865

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=94.11  E-value=0.011  Score=48.68  Aligned_cols=26  Identities=27%  Similarity=0.465  Sum_probs=22.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      .++...|+|+|.+|+||||+.+.+..
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhc
Confidence            35667899999999999999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.04  E-value=0.016  Score=47.49  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .|+++|.+|+||||+...+...
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            5999999999999999988763

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.95  E-value=0.01  Score=49.31  Aligned_cols=21  Identities=24%  Similarity=0.340  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~   60 (433)
                      .|+|+|.+++|||||...|.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999998865

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.90  E-value=0.014  Score=48.40  Aligned_cols=25  Identities=32%  Similarity=0.509  Sum_probs=21.3

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLA   59 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La   59 (433)
                      .++...|+|+|.+|+||||+.+.+.
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHh
Confidence            4556789999999999999998763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.015  Score=47.51  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=20.5

Q ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         38 STVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        38 ~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ...|+|+|.+|+||||+...+..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            45799999999999999998875

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.86  E-value=0.014  Score=47.93  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +|+|+|.+|+|||||.+.|.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999863

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.027  Score=49.90  Aligned_cols=36  Identities=33%  Similarity=0.642  Sum_probs=29.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDH   71 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~   71 (433)
                      +...+|+++|.=|+||||++-.||..+   |  +.++|.|.
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp   58 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP   58 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            456789999999999999988888776   4  55788884

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.80  E-value=0.3  Score=41.25  Aligned_cols=34  Identities=32%  Similarity=0.552  Sum_probs=26.2

Q ss_pred             eEEEEE-cCCCCCHHHHHHHHHHHh-----CCeEEeCCCC
Q psy16778         39 TVFVIM-GVSGSGKSTIGESLATRL-----GVKFIDGDHL   72 (433)
Q Consensus        39 ~~I~l~-G~~GsGKSTla~~La~~l-----g~~~id~D~~   72 (433)
                      ++|+++ |.-|+||||++..||..+     .+.++|.|.-
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~   41 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT   41 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            456665 899999999999988877     4457888754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.018  Score=47.18  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|.+|+||||+.+.+...
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46999999999999999998863

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.76  E-value=0.019  Score=47.06  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~   60 (433)
                      .|+|+|.+|+||||+...+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            589999999999999998875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.019  Score=47.10  Aligned_cols=23  Identities=26%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+++|.+|+||||+...+...
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHhcC
Confidence            36899999999999999987753

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.67  E-value=0.057  Score=47.88  Aligned_cols=40  Identities=23%  Similarity=0.392  Sum_probs=32.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCcc
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHPQ   75 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~~   75 (433)
                      ..|.++-|.|++||||||++-.++...     .+.|+|+..-..+
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~   99 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDP   99 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCH
Confidence            577899999999999999998887755     3578998876544

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.023  Score=48.14  Aligned_cols=32  Identities=16%  Similarity=0.172  Sum_probs=26.2

Q ss_pred             eEEEEEcCC-CCCHHHHHHHHHHHh---CC--eEEeCC
Q psy16778         39 TVFVIMGVS-GSGKSTIGESLATRL---GV--KFIDGD   70 (433)
Q Consensus        39 ~~I~l~G~~-GsGKSTla~~La~~l---g~--~~id~D   70 (433)
                      ++++|+|.. |+||||++-.|+..+   |.  .++|.|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d   39 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPV   39 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECcc
Confidence            689999995 999999999999887   44  456654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.65  E-value=0.015  Score=49.90  Aligned_cols=27  Identities=19%  Similarity=0.222  Sum_probs=23.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      =+..|.++.|.|+||+|||+++-.++.
T Consensus        22 Gi~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          22 GLPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            367889999999999999999976543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.60  E-value=0.012  Score=48.63  Aligned_cols=20  Identities=20%  Similarity=0.414  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHH
Q psy16778         41 FVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        41 I~l~G~~GsGKSTla~~La~   60 (433)
                      |+|+|.+|+||||+.+.|.+
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999998865

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.59  E-value=0.022  Score=51.38  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ...++.|+|+|.|.|||||+-..|.+
T Consensus         7 ~~~~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1           7 PGNNLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHC
Confidence            44668999999999999999999986

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.57  E-value=0.021  Score=49.24  Aligned_cols=28  Identities=32%  Similarity=0.342  Sum_probs=25.6

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +..|.++.|.|+||+||||++-.++-..
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            5788999999999999999999999765

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.52  E-value=0.016  Score=51.35  Aligned_cols=26  Identities=31%  Similarity=0.438  Sum_probs=22.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .....|+|+|.+|+||||+...|.++
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            34578999999999999999988764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.52  E-value=0.044  Score=48.61  Aligned_cols=41  Identities=29%  Similarity=0.398  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCCCCc
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDHLHP   74 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~~~~   74 (433)
                      =+..|.++-|.|++||||||++-.++...   |  +.|||+..-..
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~  101 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD  101 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCC
Confidence            45778999999999999999987776644   3  35788887553

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.021  Score=47.43  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|.+|+||||+.+.+..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            3689999999999999988874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.022  Score=46.83  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|.+|+||||+...+..
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999998866

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.44  E-value=0.024  Score=45.95  Aligned_cols=21  Identities=19%  Similarity=0.414  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~   60 (433)
                      .|+|+|.+|+||||+.+.+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998876

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.023  Score=46.63  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|.+|+||||+...+..
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999998875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.39  E-value=0.0075  Score=48.77  Aligned_cols=22  Identities=36%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .|+|+|.+|+||||+.+.|.+.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.38  E-value=0.023  Score=46.16  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .|+++|.+|+||||+.+.+...
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999988763

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.35  E-value=0.0086  Score=52.06  Aligned_cols=26  Identities=31%  Similarity=0.477  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++...+|+|.||+|||||...|....
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            56778899999999999999887543

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.027  Score=45.75  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|.+|+|||||...+...
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            57999999999999999988763

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.22  E-value=0.026  Score=46.71  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~   60 (433)
                      .|+++|.+|+||||+...+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998876

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.22  E-value=0.027  Score=45.86  Aligned_cols=22  Identities=18%  Similarity=0.259  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|.+|+||||+...+..
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998876

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=93.20  E-value=0.017  Score=47.83  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      -.|+|+|.++||||||...|.+
T Consensus         6 inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEEeCCCCcHHHHHHHHHH
Confidence            4699999999999999999975

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.19  E-value=0.027  Score=45.80  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|.+|+||||+.+.+..
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999999876

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.027  Score=45.80  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|.+|+||||+.+.+..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999998876

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.026  Score=45.84  Aligned_cols=21  Identities=33%  Similarity=0.574  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~   60 (433)
                      .|+|+|.+|+||||+...+..
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999998876

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.026  Score=45.64  Aligned_cols=21  Identities=19%  Similarity=0.351  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~   60 (433)
                      .|+|+|.+|+||||+.+.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999999876

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=0.045  Score=48.46  Aligned_cols=40  Identities=25%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCeEEeCCCCCc
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL-----GVKFIDGDHLHP   74 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l-----g~~~id~D~~~~   74 (433)
                      +..+.++-|.|++||||||++-.++...     .+.|+|+..-..
T Consensus        51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~   95 (263)
T d1u94a1          51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD   95 (263)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             ccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccC
Confidence            3577899999999999999998888765     346788886553

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.03  Score=45.84  Aligned_cols=21  Identities=29%  Similarity=0.523  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~   60 (433)
                      .|+|+|.+|+||||+...+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            599999999999999988876

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.93  E-value=0.029  Score=45.71  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~   60 (433)
                      .|+|+|.+|+|||||...+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999988765

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.031  Score=45.60  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|.+|+|||||...+...
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            36899999999999999988863

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.91  E-value=0.048  Score=46.70  Aligned_cols=36  Identities=33%  Similarity=0.546  Sum_probs=28.4

Q ss_pred             CCeEEEEE-cCCCCCHHHHHHHHHHHh-----CCeEEeCCCC
Q psy16778         37 PSTVFVIM-GVSGSGKSTIGESLATRL-----GVKFIDGDHL   72 (433)
Q Consensus        37 ~~~~I~l~-G~~GsGKSTla~~La~~l-----g~~~id~D~~   72 (433)
                      ++++|+++ +.-|+||||++..||..+     .+.++|.|.-
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~   42 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT   42 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            46788887 789999999999999877     4456887743

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.86  E-value=0.024  Score=50.92  Aligned_cols=26  Identities=38%  Similarity=0.521  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGV   64 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~   64 (433)
                      .+-+|+|++||||||+..+|+=.+|.
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~lg~   50 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWVFGE   50 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHTSCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            36799999999999999998765543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.031  Score=45.79  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|.+|+|||||.+.+...
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47999999999999999988763

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=92.85  E-value=0.0069  Score=50.57  Aligned_cols=24  Identities=38%  Similarity=0.455  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+.+|+|++||||||+...|.-.+
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            478899999999999999998765

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.032  Score=45.80  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|.+|+||||+...+...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999888763

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.83  E-value=0.034  Score=49.65  Aligned_cols=25  Identities=28%  Similarity=0.295  Sum_probs=22.6

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +++.|+|+|.|.+||||+-..|.+.
T Consensus         1 m~~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           1 MGFKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHCC
Confidence            4678999999999999999999973

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.027  Score=45.91  Aligned_cols=21  Identities=24%  Similarity=0.547  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~   60 (433)
                      .|+|+|.+|+||||+.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            589999999999999998765

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.79  E-value=0.028  Score=46.55  Aligned_cols=23  Identities=26%  Similarity=0.302  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|.+|+||||+.+.+.+.
T Consensus         6 iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999988764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.77  E-value=0.032  Score=48.23  Aligned_cols=24  Identities=29%  Similarity=0.254  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+++||||+.+||||+.|.++-..
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~   59 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIA   59 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHHHH
Confidence            478999999999999999877643

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.036  Score=45.17  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .|+|+|.+|+||||+.+.+...
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999988863

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.036  Score=45.54  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|.+|+||||+.+.+..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999998876

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.50  E-value=0.036  Score=46.38  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|.+|+||||+...+..
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhh
Confidence            3589999999999999998876

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.46  E-value=0.039  Score=44.92  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|.+|+|||||...+...
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46899999999999999987763

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.43  E-value=0.039  Score=44.93  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|.+|+||||+.+.+..
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3699999999999999998765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.33  E-value=0.044  Score=47.25  Aligned_cols=26  Identities=19%  Similarity=0.353  Sum_probs=22.3

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      ++++|+|+|-+.||||||...|.+..
T Consensus         4 r~p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           4 RSPIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCccHHHHHHHHHhhc
Confidence            34679999999999999999887754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=92.17  E-value=0.044  Score=44.61  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~   60 (433)
                      .|+|+|.+|+||||+.+.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998865

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.042  Score=44.93  Aligned_cols=22  Identities=36%  Similarity=0.540  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      -.|+|+|.+|+|||||.+.+..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999998875

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.16  E-value=0.046  Score=48.18  Aligned_cols=26  Identities=31%  Similarity=0.463  Sum_probs=23.0

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+.+.+|.|++|+||||++-.|+..+
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999988754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.12  E-value=0.046  Score=44.32  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      -.|+|+|.+|+||||+.+.+...
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999988763

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.11  E-value=0.039  Score=45.96  Aligned_cols=20  Identities=30%  Similarity=0.509  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESL   58 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~L   58 (433)
                      -.|+|+|.+|+||||+...+
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999998

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.045  Score=45.36  Aligned_cols=22  Identities=27%  Similarity=0.308  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|.+|+||||+...+..
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhh
Confidence            3699999999999999998876

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.00  E-value=0.045  Score=50.75  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=19.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      .+.+.+|+|++|+||||+...+..
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHHHH
Confidence            357999999999999998765443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.75  E-value=0.052  Score=45.82  Aligned_cols=27  Identities=19%  Similarity=0.105  Sum_probs=24.2

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +.+..++|.|++|+||||++..+++..
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999999865

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.72  E-value=0.029  Score=45.95  Aligned_cols=22  Identities=23%  Similarity=0.381  Sum_probs=9.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      -.|+|+|.+|+||||+...|..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999987764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.70  E-value=0.055  Score=44.06  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      -.|+|+|.+|+||||+...+..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999998876

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.67  E-value=0.054  Score=44.61  Aligned_cols=22  Identities=27%  Similarity=0.397  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      ..|+|+|.+|+||||+...+..
T Consensus         3 ~KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999988876

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.51  E-value=0.035  Score=45.38  Aligned_cols=21  Identities=33%  Similarity=0.512  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~   60 (433)
                      .|+|+|.+|+||||+...+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999887654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=91.40  E-value=0.083  Score=41.15  Aligned_cols=29  Identities=31%  Similarity=0.238  Sum_probs=22.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCCe
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGVK   65 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~~   65 (433)
                      .....+|.++.|||||+++-.+....|..
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~~~~   35 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQGYK   35 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTTTCC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            44678899999999999987666555543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=91.29  E-value=0.073  Score=44.79  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=28.2

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEe
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLGVKFID   68 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id   68 (433)
                      ..+...++|.||+++|||+++..|.+.++-..++
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis   83 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   83 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHhCCEEEe
Confidence            3566789999999999999999999988655544

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.26  E-value=0.074  Score=46.74  Aligned_cols=33  Identities=33%  Similarity=0.507  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---C--CeEEeCCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL---G--VKFIDGDH   71 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l---g--~~~id~D~   71 (433)
                      +.|+|.|.=|+||||++-.||..|   |  +..||.|.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~   39 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            578899999999999999988877   4  45788885

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.26  E-value=0.054  Score=46.41  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      -.|+|+|.+|+||||+.+.+...
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999988543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.21  E-value=0.061  Score=44.69  Aligned_cols=22  Identities=27%  Similarity=0.311  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~   60 (433)
                      -.|+|+|.+|+||||+...+..
T Consensus         4 iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4699999999999999988776

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=90.98  E-value=0.077  Score=47.35  Aligned_cols=32  Identities=13%  Similarity=0.136  Sum_probs=27.7

Q ss_pred             CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         31 PSGEGSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        31 ~~~~~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .-..+.+|..++|.|++|+||||++..+++..
T Consensus        36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            33466899999999999999999999999854

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.88  E-value=0.074  Score=49.62  Aligned_cols=29  Identities=34%  Similarity=0.471  Sum_probs=22.8

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      +..+.+-+|+|++||||||+...|.=.||
T Consensus        22 f~~~~l~~i~G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          22 FGESNFTSIIGPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34445788999999999999999864444

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=90.65  E-value=0.27  Score=44.62  Aligned_cols=159  Identities=19%  Similarity=0.161  Sum_probs=91.3

Q ss_pred             hhhcceeeccccc-CCCCCCceeeeC-CCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHH
Q psy16778        222 ALKVLRIRPRVMR-DLSKRTLVTDAL-GHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAE  299 (433)
Q Consensus       222 a~~~~~l~pr~l~-~~~~~d~~~~~~-g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~  299 (433)
                      .|+++-|+|.--. ..+++|++|.+- ...+..||+-||+..-      ++..+|.+..++|...++....  +.|+.++
T Consensus         6 tfdDVllvP~~s~~~sr~vdl~t~lt~~l~~~iPIIaa~MdtV------~~~~mA~als~~GGlGvi~r~~--~~e~~~~   77 (330)
T d1vrda1           6 TFDDVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTV------TEAALAKALAREGGIGIIHKNL--TPDEQAR   77 (330)
T ss_dssp             CGGGEEECCCCCCCCGGGSCCCEESSSSCEESSSEEECCCTTT------CSHHHHHHHHTTTCEEEECSSS--CHHHHHH
T ss_pred             ccccEEEeCCCCCcccccceEEEEEecCcccCCCEEeCCCCCc------CCHHHHHHHHHCCCeEEeeccc--chhhhHH
Confidence            3578888886421 123567888875 4578999999996442      6677888999999998886543  4455433


Q ss_pred             h---CCCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCcchhh
Q psy16778        300 K---TPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTKWF  376 (433)
Q Consensus       300 ~---~~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~~~w~  376 (433)
                      .   ........-.-+.-+.+ ..+.++..-++|++.+++++            .+++.......++.+.+..++     
T Consensus        78 ~i~~vk~~~~~v~~~vgv~~~-~~e~~~~li~agvd~ivId~------------A~G~~~~~~~~ik~ik~~~~~-----  139 (330)
T d1vrda1          78 QVSIVKKTRLLVGAAVGTSPE-TMERVEKLVKAGVDVIVIDT------------AHGHSRRVIETLEMIKADYPD-----  139 (330)
T ss_dssp             HHHHHHTCCBCCEEEECSSTT-HHHHHHHHHHTTCSEEEECC------------SCCSSHHHHHHHHHHHHHCTT-----
T ss_pred             HHHHHhhhccEEEEEEecCHH-HHHHHHHHHHCCCCEEEEec------------CCCCchhHHHHHHHHHHhCCC-----
Confidence            1   11111111122222222 22456666788999888765            122210001123333332221     


Q ss_pred             hhhccCCHHHHHHHHHHHHHcCCcEEEEecC
Q psy16778        377 QLYIYRDREITKSLVQRAEKAGYKALVLTVD  407 (433)
Q Consensus       377 Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD  407 (433)
                       ..+.-....+.+.++...++|++++.|-+.
T Consensus       140 -~~viaGnV~t~~~a~~l~~~GaD~v~VGig  169 (330)
T d1vrda1         140 -LPVVAGNVATPEGTEALIKAGADAVKVGVG  169 (330)
T ss_dssp             -SCEEEEEECSHHHHHHHHHTTCSEEEECSS
T ss_pred             -CCEEeechhHHHHHHHHHHcCCCEEeeccc
Confidence             223334455667778888899999998776

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.61  E-value=0.081  Score=43.43  Aligned_cols=23  Identities=26%  Similarity=0.315  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+++|.+|+||||+...+...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999987763

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.57  E-value=0.11  Score=45.97  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=27.4

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCe
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVK   65 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~   65 (433)
                      ...+...++|.|++++||||++..|...+|..
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~  131 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVPFY  131 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHhcch
Confidence            34566789999999999999999999988764

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=90.17  E-value=0.11  Score=47.91  Aligned_cols=160  Identities=16%  Similarity=0.136  Sum_probs=92.0

Q ss_pred             hhhcceeecccc--cC-CCCCCceeeeC--------CCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCC
Q psy16778        222 ALKVLRIRPRVM--RD-LSKRTLVTDAL--------GHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTIS  290 (433)
Q Consensus       222 a~~~~~l~pr~l--~~-~~~~d~~~~~~--------g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s  290 (433)
                      .|+++-|+|..-  .. -+++|+++++.        +..+..||+-||+-      -=++..+|.+-.+.|...++.-  
T Consensus        10 tFdDVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMD------TVt~~~mA~~la~~GglgvihR--   81 (362)
T d1pvna1          10 TFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQ------SVSGEKMAIALAREGGISFIFG--   81 (362)
T ss_dssp             CGGGEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCT------TTCSHHHHHHHHHTTCEEEECC--
T ss_pred             CccceEEeCCCCcCCCCccceeeeeEEEeeccccccccccCCcEEecCCC------CcCCHHHHHHHHHCCCEEEEee--
Confidence            468899999863  22 46789999874        45689999999973      2266778888999998888754  


Q ss_pred             CCCHHHHHHhCCCCcc--eEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHhh
Q psy16778        291 TTSIEELAEKTPQTTK--WFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEK  368 (433)
Q Consensus       291 ~~~~eeva~~~~~~~~--w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~  368 (433)
                      ..++|+.++.......  +.........+. .+.++....+|+..+++++            .+++..-....++.+...
T Consensus        82 ~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~ag~d~i~IDv------------AhG~~~~v~~~i~~ir~~  148 (362)
T d1pvna1          82 SQSIESQAAMVHAVKNFRYLVGAGINTRDF-RERVPALVEAGADVLCIDS------------SDGFSEWQKITIGWIREK  148 (362)
T ss_dssp             SSCHHHHHHHHHHHHTCCCCCEEEECSSSH-HHHHHHHHHHTCSEEEECC------------SCCCBHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHhhhhhhcccccccccchhhh-HHHHHHHhhcCceEEeech------------hccchhHHHHHHHHHHHh
Confidence            3567776543111111  111111111111 1344445577999998876            222210000112222211


Q ss_pred             CCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecC
Q psy16778        369 TPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVD  407 (433)
Q Consensus       369 ~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD  407 (433)
                      .+     -...+.-....|.+.++...++|+.+|-|-+=
T Consensus       149 ~~-----~~~~IiAGNVaT~e~~~~L~~aGaD~vkVGIG  182 (362)
T d1pvna1         149 YG-----DKVKVGAGNIVDGEGFRYLADAGADFIKIGIG  182 (362)
T ss_dssp             HG-----GGSCEEEEEECSHHHHHHHHHHTCSEEEECSS
T ss_pred             hc-----cceeeecccccCHHHHHHHHHhCCcEEEeccc
Confidence            11     01234444456777777778899998877653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.14  E-value=0.068  Score=50.29  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=21.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~   60 (433)
                      .+..|+|+|.+|+||||+...|-+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            457899999999999999999875

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.99  E-value=0.55  Score=43.09  Aligned_cols=159  Identities=16%  Similarity=0.121  Sum_probs=92.6

Q ss_pred             hhhcceeeccc-ccCCCCCCceeeeC-CCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHH
Q psy16778        222 ALKVLRIRPRV-MRDLSKRTLVTDAL-GHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAE  299 (433)
Q Consensus       222 a~~~~~l~pr~-l~~~~~~d~~~~~~-g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~  299 (433)
                      .|+++-|+|.- =...+++|+++.+- ...+..||+-||+-      .=++..+|.+..++|...++.-.  .+.|+..+
T Consensus        13 ~fdDVllvP~~st~~s~~vdl~~~it~~~~~~iPIIsA~MD------tV~~~~mA~~ls~~Gglgvlhr~--~~~~e~~~   84 (365)
T d1zfja1          13 TFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMD------TVTGSKMAIAIARAGGLGVIHKN--MSITEQAE   84 (365)
T ss_dssp             CGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCT------TTCSHHHHHHHHHTTCEEEECCS--SCHHHHHH
T ss_pred             CcceEEEeCCCCCcCHhHceeeEEeeCCcccCCCEEECCCC------CcCCHHHHHHHHHCCCceEEcCc--cCHHHHHH
Confidence            56888999942 22335789999985 46899999999963      23667788888999998887654  45666553


Q ss_pred             hC-----CCCcceEEEeeccCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchHHHHHhhCCCcch
Q psy16778        300 KT-----PQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNIEELAEKTPQTTK  374 (433)
Q Consensus       300 ~~-----~~~~~w~qly~~~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~e~i~~~~~~~~~  374 (433)
                      ..     .....+....+.-..+. .+.+...-++|+..|++++            .+++..-....++++.+..++   
T Consensus        85 ~~~~~~~~~~~~~v~aavGv~~~~-~er~~~l~~agvd~ivID~------------A~G~s~~~~~~i~~ik~~~~~---  148 (365)
T d1zfja1          85 EVRKVKRSEGRLLVAAAVGVTSDT-FERAEALFEAGADAIVIDT------------AHGHSAGVLRKIAEIRAHFPN---  148 (365)
T ss_dssp             HHHHHHHHTSCBCCEEEECSSTTH-HHHHHHHHHHTCSEEEECC------------SCTTCHHHHHHHHHHHHHCSS---
T ss_pred             HhhhhhhccCceEEEEEeccCchH-HHHHHHHHHcCCCEEEEEC------------CcccccchhHHHHHHHhhCCC---
Confidence            21     11112222222222221 1345555678999988764            222210001123333333222   


Q ss_pred             hhhhhccCCHHHHHHHHHHHHHcCCcEEEEecC
Q psy16778        375 WFQLYIYRDREITKSLVQRAEKAGYKALVLTVD  407 (433)
Q Consensus       375 w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD  407 (433)
                         ..+..-...|.+.++...++|+++|.|-+=
T Consensus       149 ---~~iIaGNV~T~e~a~~L~~aGaD~VkVGiG  178 (365)
T d1zfja1         149 ---RTLIAGNIATAEGARALYDAGVDVVKVGIG  178 (365)
T ss_dssp             ---SCEEEEEECSHHHHHHHHHTTCSEEEECSS
T ss_pred             ---cceeecccccHHHHHHHHhcCCceEEeeec
Confidence               223333455667777777899999887653

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.92  E-value=0.14  Score=40.16  Aligned_cols=26  Identities=35%  Similarity=0.261  Sum_probs=21.2

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +|.+-+|+||+.|||||-.=..+.++
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            47888999999999999776666555

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=89.84  E-value=0.39  Score=44.38  Aligned_cols=165  Identities=20%  Similarity=0.147  Sum_probs=94.0

Q ss_pred             hhhcceeecccccCC--CCCCceeee-CCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHH
Q psy16778        222 ALKVLRIRPRVMRDL--SKRTLVTDA-LGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELA  298 (433)
Q Consensus       222 a~~~~~l~pr~l~~~--~~~d~~~~~-~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva  298 (433)
                      -|+++-|+|.. .++  .++|+++.+ ....+..||+-||+..  +    ++..+|.+-.++|...++.-  ..+.|+.+
T Consensus        15 tfdDVllvP~~-st~~sr~V~l~t~lt~~~~l~iPIIsApMdt--V----t~~~mA~als~~GGLGvLhr--~~~~e~~~   85 (378)
T d1jr1a1          15 TYNDFLILPGY-IDFTADQVDLTSALTKKITLKTPLVSSPMDT--V----TEAGMAIAMALTGGIGFIHH--NCTPEFQA   85 (378)
T ss_dssp             CGGGEEECCCC-CCSCGGGCBCCEESSSSCEESSCEEECCCTT--T----CSHHHHHHHHHHTCEEEECC--SSCHHHHH
T ss_pred             CcccEEEeCCC-CCCcHHHceeeeEEECCccCCCCEEECCCCC--c----CCHHHHHHHHHCCCeeEEcC--CCCHHHHH
Confidence            35788888863 333  357888888 5568999999999743  3    56678888999999988875  44666665


Q ss_pred             HhC------CCCcce-----EEEee----c-cCHHHHHHHHHHHHHcCCcEEEEeeeecccCccccccccccCCCccchH
Q psy16778        299 EKT------PQTTKW-----FQLYI----Y-RDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHLNI  362 (433)
Q Consensus       299 ~~~------~~~~~w-----~qly~----~-~d~~~~~~~~~~A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~s~  362 (433)
                      +..      ...+..     .++..    + .++..  ...+....+|...+++++-            +++.......+
T Consensus        86 ~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~~~--~~~~~l~~agv~vi~id~a------------~g~~~~~~~~i  151 (378)
T d1jr1a1          86 NEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDK--YRLDLLALAGVDVVVLDSS------------QGNSIFQINMI  151 (378)
T ss_dssp             HHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTHHH--HHHHHHHHHTCCEEEECCS------------SCCSHHHHHHH
T ss_pred             HHHheehhhhhCcccccccccCEEEEEEeccCHHHH--HHHHHHHhhccceEeeecc------------CccchhhHHHH
Confidence            421      111100     01111    1 12222  3445556789998887661            11100001112


Q ss_pred             HHHHhhCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCchh
Q psy16778        363 EELAEKTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVDTNVFGTRYA  416 (433)
Q Consensus       363 e~i~~~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD~~~~g~r~~  416 (433)
                      +.+....+      ...+.--...|.+.++...++|+++|.|-+= |..+-..|
T Consensus       152 ~~ik~~~~------~~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG-~Gs~ctTr  198 (378)
T d1jr1a1         152 KYMKEKYP------NLQVIGGNVVTAAQAKNLIDAGVDALRVGMG-CGSICITQ  198 (378)
T ss_dssp             HHHHHHST------TCEEEEEEECSHHHHHHHHHHTCSEEEECSS-CSTTBCHH
T ss_pred             HHHHHHCC------CCceeecccccHHHHHHHHHhCCCEEeeccc-cccccccc
Confidence            22222222      2333334455777788888999999988765 44444444

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.67  E-value=0.079  Score=47.13  Aligned_cols=17  Identities=24%  Similarity=0.429  Sum_probs=13.8

Q ss_pred             EEEEEcCCCCCHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGE   56 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~   56 (433)
                      .++|.|++||||||++-
T Consensus        16 ~~lI~g~aGTGKTt~l~   32 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVIT   32 (306)
T ss_dssp             EEEECCCTTSCHHHHHH
T ss_pred             CEEEEeeCCccHHHHHH
Confidence            36788999999998753

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=89.67  E-value=0.094  Score=49.40  Aligned_cols=66  Identities=9%  Similarity=-0.022  Sum_probs=37.3

Q ss_pred             chHHHHHHHHhcCCceEEecCCCCCHHHHH-----HhCCC-CcceEEEeec-cCHHHHHHHHHHHHHcCCcEEEEe
Q psy16778        269 GEIGNAAAVGEVGGIYILSTISTTSIEELA-----EKTPQ-TTKWFQLYIY-RDREITKSLVQRAEKAGYKALVLT  337 (433)
Q Consensus       269 ~e~~~a~aa~~~g~~~~~s~~s~~~~eeva-----~~~~~-~~~w~qly~~-~d~~~~~~~~~~A~~ag~~~i~lt  337 (433)
                      .-..+..-+.+.|+.+++.+.+...++++.     +...+ ...++.+... .|.+.. +.+  ++..|-..+..+
T Consensus       293 ~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~~yg~~~a~~i~~n~~t~i~~~~~~~d~~ta-e~~--s~~~G~~~v~~~  365 (433)
T d1e9ra_         293 SLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRASFRSLVVLGGSRTDPKTN-EDM--SLSLGEHEVERD  365 (433)
T ss_dssp             SHHHHHHHCTTTTEEEEEEESCHHHHHHHHCHHHHHHHHTTCCEEEEEECCTTCHHHH-HHH--HHHHCEEEEEEE
T ss_pred             HHHHHHHHhCCCCceEEEEeccHHHHHHHHhHHHHHHHHHhcCcEEEecCCCCCHHHH-HHH--HHHhCCEEEEEE
Confidence            334456677899999999999987787663     22222 2233433333 355543 232  334575555543

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.47  E-value=0.11  Score=42.94  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|..|+||||+...+...
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.46  E-value=0.098  Score=44.20  Aligned_cols=25  Identities=20%  Similarity=0.223  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      .+|+|+|-.++|||||...|....|
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            5799999999999999999976554

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.19  E-value=0.1  Score=46.75  Aligned_cols=16  Identities=38%  Similarity=0.603  Sum_probs=13.7

Q ss_pred             EEEEcCCCCCHHHHHH
Q psy16778         41 FVIMGVSGSGKSTIGE   56 (433)
Q Consensus        41 I~l~G~~GsGKSTla~   56 (433)
                      ++|.|++||||||++-
T Consensus        27 ~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             EEEEECTTSCHHHHHH
T ss_pred             EEEEecCCccHHHHHH
Confidence            6788999999998763

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.12  E-value=0.11  Score=45.21  Aligned_cols=26  Identities=23%  Similarity=0.331  Sum_probs=21.9

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+.-|+|.|.+|+||+++|+.|....
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            34568999999999999999998643

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.06  E-value=0.11  Score=42.67  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..|+|+|..|+||||+.+.+...
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            47999999999999999988653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.06  E-value=0.087  Score=47.68  Aligned_cols=23  Identities=22%  Similarity=0.180  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      |.|+|+|.|.+||||+-..|.+.
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCC
Confidence            46999999999999999999763

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.99  E-value=0.18  Score=39.85  Aligned_cols=28  Identities=32%  Similarity=0.092  Sum_probs=23.4

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .+.|.+-+|+|||.|||||-+=....++
T Consensus         4 ~~~G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           4 KDHGWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcceeEEEEEeccccHHHHHHHHHHHHh
Confidence            3578899999999999999877777665

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=88.71  E-value=0.082  Score=40.75  Aligned_cols=22  Identities=18%  Similarity=-0.035  Sum_probs=18.9

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGE   56 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~   56 (433)
                      .++|+..+|.+++|||||.++-
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHH
T ss_pred             HHcCCcEEEEcCCCCChhHHHH
Confidence            4678999999999999997663

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.63  E-value=0.18  Score=44.72  Aligned_cols=33  Identities=33%  Similarity=0.449  Sum_probs=25.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh---CC--eEEeCCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL---GV--KFIDGDH   71 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l---g~--~~id~D~   71 (433)
                      ++|+|.|.=|.||||++-.||..|   |.  ..||.|.
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~Dp   40 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP   40 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence            467889999999999887777665   44  4688875

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.02  E-value=0.13  Score=45.50  Aligned_cols=28  Identities=21%  Similarity=0.124  Sum_probs=23.4

Q ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778         37 PSTVFVIMGVSGSGKSTIGESLATRLGV   64 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKSTla~~La~~lg~   64 (433)
                      +-++|+|+|..|||||||...|....|.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            3468999999999999999999765553

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=87.72  E-value=0.19  Score=44.33  Aligned_cols=26  Identities=35%  Similarity=0.617  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCC
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGV   64 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~   64 (433)
                      ++|+|+|..|+|||||...|.-.-|.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~   28 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGA   28 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCC
Confidence            57999999999999999998765553

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.71  E-value=0.13  Score=42.57  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Q psy16778         40 VFVIMGVSGSGKSTIGESLATRLG   63 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~~lg   63 (433)
                      +|+|+|...||||..|..|+...+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC
Confidence            478999999999999999876543

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=87.62  E-value=0.28  Score=45.66  Aligned_cols=70  Identities=26%  Similarity=0.260  Sum_probs=50.9

Q ss_pred             hhhcceeeccc-ccCCCCCCceeee-CCCccCCceeechhhhccccCccchHHHHHHHHhcCCceEEecCCCCCHHHHHH
Q psy16778        222 ALKVLRIRPRV-MRDLSKRTLVTDA-LGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVGEVGGIYILSTISTTSIEELAE  299 (433)
Q Consensus       222 a~~~~~l~pr~-l~~~~~~d~~~~~-~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~~~g~~~~~s~~s~~~~eeva~  299 (433)
                      .|+++-|+|.- =...+++|+++.+ -+.++..||+-||+  ..+    .|..+|.+.++.|...++.-  ..++|+.++
T Consensus         9 tfDDVlLvP~~st~~~~~vdl~~~~t~~~~l~iPIisA~M--DtV----t~~~mAi~ma~~GGlgVihr--~~~ie~q~~   80 (388)
T d1eepa_           9 TFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAM--DTV----TESQMAIAIAKEGGIGIIHK--NMSIEAQRK   80 (388)
T ss_dssp             CGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCC--TTT----CSHHHHHHHHHHTSEEEECS--SSCHHHHHH
T ss_pred             CcccEEEeCCCCCCCHHHceeeEEeeCCEecCCCEEecCC--CCC----CCHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence            46888899943 1233568999999 46799999999996  222    66778888888998887754  346776654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.48  E-value=0.38  Score=35.08  Aligned_cols=38  Identities=26%  Similarity=0.334  Sum_probs=32.0

Q ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC
Q psy16778         34 EGSPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL   72 (433)
Q Consensus        34 ~~~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~   72 (433)
                      .+.+.+.|.++|..|+|.|.+|+.|.+ .|+.+.-+|.-
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~-~G~~VsGSD~~   41 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLN-EGYQISGSDIA   41 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHH-HTCEEEEEESC
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence            356778999999999999999999988 59987766654

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=86.33  E-value=0.39  Score=42.85  Aligned_cols=156  Identities=14%  Similarity=0.143  Sum_probs=77.0

Q ss_pred             CCCCceeeeCCCccCCceeechhhhccccCccchHHHHHHHH--hcCCceE-------------------------EecC
Q psy16778        237 SKRTLVTDALGHPVQIPIGVSPAAMQKLAHEEGEIGNAAAVG--EVGGIYI-------------------------LSTI  289 (433)
Q Consensus       237 ~~~d~~~~~~g~~~~~P~~~~p~~~~~~~~~~~e~~~a~aa~--~~g~~~~-------------------------~s~~  289 (433)
                      +++.++|+++|.+++.||++|. |..+.    ++. ..+.+.  .+|...+                         ....
T Consensus         3 ~~~~L~~~~~Gl~l~nPi~~aA-G~~~~----~~~-~~~~~~~~g~G~v~~~ti~~~~~~gn~~pr~~~~~~~~~n~~g~   76 (311)
T d1ep3a_           3 ENNRLSVKLPGLDLKNPIIPAS-GCFGF----GEE-YAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGL   76 (311)
T ss_dssp             CCTTTCEEETTEEESSSEEECT-TSSTT----STT-GGGTSCGGGSSCEEEEEECSSCBCCCCSCCEEEETTEEEECCCC
T ss_pred             CCCcceEEECCEEcCCCcEECC-CCCCC----CHH-HHHhhhhcCccEEEEeeEcccccCCCCCCeEeeecccccccccc
Confidence            5788999999999999999993 22111    110 011111  1222211                         1112


Q ss_pred             CCCCHHHHH--------HhCCCCcceEEEeeccCHHHHHHHHHH-HHHcCCcEEEEeeeecccCccccccccccCCCccc
Q psy16778        290 STTSIEELA--------EKTPQTTKWFQLYIYRDREITKSLVQR-AEKAGYKALVLTVDTNVFGTRYADIRNKFNMPSHL  360 (433)
Q Consensus       290 s~~~~eeva--------~~~~~~~~w~qly~~~d~~~~~~~~~~-A~~ag~~~i~ltvD~~~~G~r~~~~~~~~~~~~~~  360 (433)
                      ++..+|.+.        ...++.+...|+......+.. +.++. ++.+|+..|-+.+..|.........   ..  ...
T Consensus        77 ~~~g~~~~~~~~~~~~~~~~~~~pii~si~~~~~~~~~-~~~~~~~~~~g~d~ielN~~cP~~~~~~~~~---~~--~~~  150 (311)
T d1ep3a_          77 QNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYV-AVCAKIGDAANVKAIELNISCPNVKHGGQAF---GT--DPE  150 (311)
T ss_dssp             CBCCHHHHHHTHHHHHHHHCTTSCEEEEECCSSHHHHH-HHHHHHTTSTTEEEEEEECCSEEGGGTTEEG---GG--CHH
T ss_pred             cchhHHHHhhhhhhhhhcccCCCcccccccchhhhHHH-HHHHHHhhcccccccccccCCCccccccccc---cc--CHH
Confidence            233445442        234456677788665554443 33333 3445888888887666422111000   00  011


Q ss_pred             hHHHHHh----hCCCcchhhhhhccCCHHHHHHHHHHHHHcCCcEEEEecC
Q psy16778        361 NIEELAE----KTPQTTKWFQLYIYRDREITKSLVQRAEKAGYKALVLTVD  407 (433)
Q Consensus       361 s~e~i~~----~~~~~~~w~Qly~~~~~~~~~~~~~ra~~~G~~aivlTvD  407 (433)
                      ...++..    ... .+.+..+-.  +-....++++.++++|+.++++.-.
T Consensus       151 ~~~~~~~~v~~~~~-~p~~vkl~~--~~~~~~~~a~~~~~~~~~~~~~~n~  198 (311)
T d1ep3a_         151 VAAALVKACKAVSK-VPLYVKLSP--NVTDIVPIAKAVEAAGADGLTMINT  198 (311)
T ss_dssp             HHHHHHHHHHHHCS-SCEEEEECS--CSSCSHHHHHHHHHTTCSEEEECCC
T ss_pred             HHHHHHHHHHhccC-CCeeeeecc--cccchHHHHHHHHHhhhheeEEEee
Confidence            1222222    222 233333322  2122457788888999999988544

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=86.28  E-value=0.31  Score=38.29  Aligned_cols=23  Identities=22%  Similarity=0.146  Sum_probs=18.2

Q ss_pred             CCeEEEEEcCCCCCHHH-HHHHHH
Q psy16778         37 PSTVFVIMGVSGSGKST-IGESLA   59 (433)
Q Consensus        37 ~~~~I~l~G~~GsGKST-la~~La   59 (433)
                      .|.+-+++||+.||||| |.+.+.
T Consensus         1 ~G~L~~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           1 IGWIEFITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEEccccCHHHHHHHHHHH
Confidence            36788999999999999 555543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.86  E-value=0.23  Score=43.87  Aligned_cols=27  Identities=19%  Similarity=0.224  Sum_probs=24.5

Q ss_pred             CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         35 GSPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        35 ~~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      ..+|..++|.|.+|+||||++..++..
T Consensus        65 igkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          65 YAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            468999999999999999999999875

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=85.72  E-value=0.22  Score=43.96  Aligned_cols=26  Identities=31%  Similarity=0.465  Sum_probs=22.9

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      +.+..|+++|.|.+||||+...|.++
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEEecCccchhhhhhhhhcc
Confidence            45678999999999999999999874

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=85.71  E-value=0.2  Score=44.82  Aligned_cols=21  Identities=38%  Similarity=0.678  Sum_probs=17.6

Q ss_pred             CCCeEEEEEcCCCCCHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGE   56 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~   56 (433)
                      .++.+-++-|.||+|||||+.
T Consensus        12 ~~~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            356777899999999999874

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=85.65  E-value=0.27  Score=49.33  Aligned_cols=27  Identities=26%  Similarity=0.446  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++..|+|.|-||||||+-++.+-+.+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999987765

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=85.01  E-value=0.3  Score=49.24  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=24.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++..|+|.|-||||||+-+|.+-+.+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999998876

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.68  E-value=0.25  Score=44.40  Aligned_cols=21  Identities=38%  Similarity=0.686  Sum_probs=17.7

Q ss_pred             CCCeEEEEEcCCCCCHHHHHH
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGE   56 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~   56 (433)
                      +.+.+-++-|.||+|||||+.
T Consensus        12 ~~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            456677899999999999984

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=84.52  E-value=0.32  Score=48.91  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=24.5

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++..|+|.|-||||||.-++.+-+.+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999998866

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=84.01  E-value=0.34  Score=49.43  Aligned_cols=27  Identities=22%  Similarity=0.367  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++..|+|+|-||||||.-++.+-+.+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999888766

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=83.98  E-value=0.23  Score=44.68  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=23.0

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhCCeEEeCCCC
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRLGVKFIDGDHL   72 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~lg~~~id~D~~   72 (433)
                      +.+.+-++-|.||+|||||+.    .-+...|.-|..
T Consensus        12 ~~~~valffGLSGTGKTTLs~----~~~r~ligDDe~   44 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTLST----DPERPLIGDDEH   44 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHHTC----BTTBCEEESSEE
T ss_pred             CCCCEEEEEccCCCCcccccc----CCCceEEcCcce
Confidence            346788999999999999775    234445554444

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=83.67  E-value=0.31  Score=40.32  Aligned_cols=21  Identities=24%  Similarity=0.389  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHH
Q psy16778         40 VFVIMGVSGSGKSTIGESLAT   60 (433)
Q Consensus        40 ~I~l~G~~GsGKSTla~~La~   60 (433)
                      +|+|+|-..+|||||...|..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEeccCCcHHHHHHHHHh
Confidence            689999999999999999975

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=83.56  E-value=0.39  Score=39.97  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      -+|+++|-..+|||||...|.+.+
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHH
Confidence            569999999999999999887644

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=82.85  E-value=0.41  Score=48.33  Aligned_cols=27  Identities=19%  Similarity=0.335  Sum_probs=24.4

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      .++..|+|+|-||||||.-++.+-+.+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            577899999999999999999998865

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=81.38  E-value=0.42  Score=48.64  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=24.1

Q ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q psy16778         36 SPSTVFVIMGVSGSGKSTIGESLATRL   62 (433)
Q Consensus        36 ~~~~~I~l~G~~GsGKSTla~~La~~l   62 (433)
                      +++..|+|+|-||||||.-++.+-+.+
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999888866

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.02  E-value=0.39  Score=42.42  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATR   61 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~   61 (433)
                      .+|.++|+.++||||++..|.+.
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            47999999999999999988763

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=80.79  E-value=0.61  Score=39.58  Aligned_cols=27  Identities=26%  Similarity=0.228  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCe
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVK   65 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~   65 (433)
                      .+|+++|-..+||||+...|....|..
T Consensus        10 ~~i~viGHVd~GKSTL~~~Ll~~~g~i   36 (222)
T d1zunb3          10 LRFLTCGNVDDGKSTLIGRLLHDSKMI   36 (222)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcCCc
Confidence            368999999999999999998776654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.07  E-value=0.54  Score=40.43  Aligned_cols=27  Identities=33%  Similarity=0.343  Sum_probs=23.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhCCe
Q psy16778         39 TVFVIMGVSGSGKSTIGESLATRLGVK   65 (433)
Q Consensus        39 ~~I~l~G~~GsGKSTla~~La~~lg~~   65 (433)
                      .+|+++|-.++||||+...|.-..|..
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~i   33 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGGI   33 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSCS
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            589999999999999999888766653