Psyllid ID: psy16786

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
TYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccccccccccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccccccEEEEEccEEEEEccccEEEEEcccccccccccccccEEEEEEEEEcccEEEccEEccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEcccccccccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccHHHHEEEccccccccccEEEEcccccccccEEEEEEcccEEEEccccccEEEEEcccHEEEEccccccEEEEEEEEccccEEEccccEEEEEEEc
Coil and Loop (DISEMBL)
tyrssnqrepgqpstpstnlNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKleesrskgnpklkdltyrssnqrepgqpstpstnlNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKleesrskgnpklkdlymrpniVMKRMTGsleahvngfrytsvrgdkvDILYNNIkhaffqpcdGELVILLHFHLKNAimfgkkkhvdvqfyt
Flexible Loop (DISEMBL)
tyrssnqrepgqpstpstnlntvFRLIKEVQKKfrsreaeekekedlvkqdkleesrskgnpklkdltyrssnqrepgqpstpstnlntvFRLIKEVQKKfrsreaeekekedlvkqdkleesrskgnpklkdlymrpNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT
Low Complexity Region (SEG)
TYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT
Disordered region (IsUnstruct)
**********************VFRLI**************************************************************VFRLI***************************************LYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQF**
Disordered Region (DISOPRED)
*Y***N************NLNTVFRLIKE************************EESRSKGNPKLKDLTYRSSN******PSTPSTNLNTVFRLIKE****************************SKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT
Disordered Region (DISEMBL)
****************STNLNTVFRLIKEVQK**************************KGNPKLKDLTYR*************STNLNTVFRLIKEVQK**************************KGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT
Disordered Region (DISPRO)
*************STPSTNLNTVFRLIKEVQKKFRSREAEEKE*EDLVKQDKLEESRSKGNPKLKDLTYRSSN******PSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q8IRG6	1083	FACT complex subunit spt1	yes	N/A	0.701	0.136	0.797	7e-67
Q9W603	1035	FACT complex subunit SPT1	N/A	N/A	0.701	0.142	0.736	2e-64
Q920B9	1047	FACT complex subunit SPT1	yes	N/A	0.701	0.141	0.709	5e-63
Q9Y5B9	1047	FACT complex subunit SPT1	yes	N/A	0.701	0.141	0.716	6e-63
Q61E63	1034	FACT complex subunit spt-	N/A	N/A	0.701	0.143	0.684	2e-57
Q9N5R9	1030	FACT complex subunit spt-	yes	N/A	0.701	0.143	0.684	8e-53
Q7X923	1056	FACT complex subunit SPT1	yes	N/A	0.687	0.137	0.433	6e-31
O94267	1019	FACT complex subunit spt1	yes	N/A	0.649	0.134	0.442	1e-29
Q4WJ02	1019	FACT complex subunit spt1	yes	N/A	0.644	0.133	0.476	6e-29
Q2UBF1	1042	FACT complex subunit spt1	yes	N/A	0.644	0.130	0.469	1e-28

>sp|Q8IRG6|SPT16_DROME FACT complex subunit spt16 OS=Drosophila melanogaster GN=dre4 PE=1 SV=2

 Score =  253 bits (646), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 118/148 (79%), Positives = 132/148 (89%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           +K++TYRSSN +E G+   PS NLN  FRLIKEVQK+F++REAEE+EKEDLVKQD L  S
Sbjct: 601 VKEVTYRSSNVKEHGEVGAPSANLNNAFRLIKEVQKRFKTREAEEREKEDLVKQDTLILS 660

Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
           ++KGNPKLKDLY+RPNIV KRMTGSLEAH NGFRY SVRGDKVDILYNNIK AFFQPCDG
Sbjct: 661 QNKGNPKLKDLYIRPNIVTKRMTGSLEAHSNGFRYISVRGDKVDILYNNIKSAFFQPCDG 720

Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
           E++ILLHFHLK AIMFGKKKHVDVQFYT
Sbjct: 721 EMIILLHFHLKYAIMFGKKKHVDVQFYT 748

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. The FACT complex is required for expression of Hox genes.
Drosophila melanogaster (taxid: 7227)

>sp|Q9W603|SP16H_XENLA FACT complex subunit SPT16 OS=Xenopus laevis GN=supt16h PE=1 SV=2

 Score =  244 bits (624), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 109/148 (73%), Positives = 129/148 (87%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           +K++TYR+SN + PG PS PS NL   FR+IKEVQK++++REAEEKEKE +VKQD L  +
Sbjct: 597 VKEITYRASNVKTPGDPSVPSLNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVIN 656

Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
            ++ NPKLKDLY+RPNI  KRM GSLEAHVNGFR+TSVRGDKVDILYNNIKHA FQPCDG
Sbjct: 657 LNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDG 716

Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
           E++I+LHFHLKNAIMFGKK+H DVQFYT
Sbjct: 717 EMIIVLHFHLKNAIMFGKKRHTDVQFYT 744

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR).

Xenopus laevis (taxid: 8355)

>sp|Q920B9|SP16H_MOUSE FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2

 Score =  240 bits (613), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 105/148 (70%), Positives = 129/148 (87%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           +K++TYR+SN + PG+ + P+ NL   FR+IKEVQK++++REAEEKEKE +VKQD L  +
Sbjct: 595 VKEITYRASNMKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVIN 654

Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
            ++ NPKLKDLY+RPNI  KRM GSLEAHVNGFR+TSVRGDKVDILYNNIKHA FQPCDG
Sbjct: 655 LNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDG 714

Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
           E++I+LHFHLKNA+MFGKK+H DVQFYT
Sbjct: 715 EMIIVLHFHLKNAVMFGKKRHTDVQFYT 742

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. The FACT complex is probably also involved in phosphorylation of 'Ser-392' of p53/TP53 via its association with CK2 (casein kinase II). Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene.

Mus musculus (taxid: 10090)

>sp|Q9Y5B9|SP16H_HUMAN FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1

 Score =  240 bits (612), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 106/148 (71%), Positives = 129/148 (87%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           +K++TYR+SN + PG+ + P+ NL   FR+IKEVQK++++REAEEKEKE +VKQD L  +
Sbjct: 595 VKEITYRASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVIN 654

Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
            ++ NPKLKDLY+RPNI  KRM GSLEAHVNGFR+TSVRGDKVDILYNNIKHA FQPCDG
Sbjct: 655 LNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDG 714

Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
           E++I+LHFHLKNAIMFGKK+H DVQFYT
Sbjct: 715 EMIIVLHFHLKNAIMFGKKRHTDVQFYT 742

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. The FACT complex is probably also involved in phosphorylation of 'Ser-392' of p53/TP53 via its association with CK2 (casein kinase II). Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene.

Homo sapiens (taxid: 9606)

>sp|Q61E63|SPT16_CAEBR FACT complex subunit spt-16 OS=Caenorhabditis briggsae GN=spt-16 PE=3 SV=1

 Score =  221 bits (563), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 129/149 (86%), Gaps = 1/149 (0%)

Query: 64  LKDLTYRSSNQREPGQPSTP-STNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEE 122
           +K+LT+R+SN +E    +TP S+NL+T FR IKE+QK+FR+ EAEE+EK+  VKQDKL  
Sbjct: 593 MKELTFRASNIKEHHSDATPPSSNLSTAFRQIKEMQKRFRTEEAEEREKDGAVKQDKLIL 652

Query: 123 SRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCD 182
           S++K NPKLKDL +RPNI+ KR+TGSLEAH NGFRYTS+RGD++D+LYNNIKHAFFQPCD
Sbjct: 653 SQNKLNPKLKDLLIRPNIIQKRITGSLEAHTNGFRYTSLRGDRIDVLYNNIKHAFFQPCD 712

Query: 183 GELVILLHFHLKNAIMFGKKKHVDVQFYT 211
            E++ILLHFHLKN +M+GKKK+ DVQFYT
Sbjct: 713 NEMIILLHFHLKNPVMWGKKKYKDVQFYT 741

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q9N5R9|SPT16_CAEEL FACT complex subunit spt-16 OS=Caenorhabditis elegans GN=spt-16 PE=3 SV=1

 Score =  206 bits (525), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 129/149 (86%), Gaps = 1/149 (0%)

Query: 64  LKDLTYRSSNQREPGQPST-PSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEE 122
           +K+LT+R+SN ++    ST PS NL+T FRLIKE+QK+F++ EAEE+EKE  VKQDKL  
Sbjct: 594 MKELTFRASNIKDHHSDSTAPSHNLSTAFRLIKEMQKRFKTEEAEEREKEGAVKQDKLIL 653

Query: 123 SRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCD 182
           S++K NPKLKDL +RPNI+ KR+TGSLEAH NGFRYTS+RGD++D+LYNNIKHAFFQPCD
Sbjct: 654 SQNKLNPKLKDLLIRPNIIQKRITGSLEAHTNGFRYTSLRGDRIDVLYNNIKHAFFQPCD 713

Query: 183 GELVILLHFHLKNAIMFGKKKHVDVQFYT 211
            E++ILLHFHLKN +++GKKK+ DVQFYT
Sbjct: 714 NEMIILLHFHLKNPVLWGKKKYKDVQFYT 742

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II.

Caenorhabditis elegans (taxid: 6239)

>sp|Q7X923|SPT16_ORYSJ FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2

 Score =  134 bits (336), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 105/159 (66%), Gaps = 14/159 (8%)

Query: 57  RSKGNPKLKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVK 116
           +S+G   LK++T+RS + R   +          V + IK ++++  SRE+E  E+  LV 
Sbjct: 600 KSQGAIYLKEITFRSKDPRHSSE----------VVQQIKTLRRQVASRESERAERATLVT 649

Query: 117 QDKLEESRSKGNP-KLKDLYMRPNIVMK--RMTGSLEAHVNGFRYTSVRGD-KVDILYNN 172
           Q+KL+ + ++  P +L D+++RP    +  ++TG+LE+HVNGFRY++ R D +VDI+Y N
Sbjct: 650 QEKLQLTSNRNKPVRLSDVWIRPAFGGRGRKLTGTLESHVNGFRYSTSRADERVDIMYGN 709

Query: 173 IKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT 211
           +KHAFFQP + E++ LLHFHL N IM G KK  DVQFY 
Sbjct: 710 VKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYV 748

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. SSRP1 binds specifically to double-stranded DNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O94267|SPT16_SCHPO FACT complex subunit spt16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt16 PE=1 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 99/149 (66%), Gaps = 12/149 (8%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           ++  T+RSSN          ++ ++ VF+ I++++K    RE E KE  D+++QDKL E 
Sbjct: 606 IRSFTFRSSN----------NSRMSQVFKDIQDMKKAATKRETERKEFADVIEQDKLIEI 655

Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTS-VRGDK-VDILYNNIKHAFFQPC 181
           ++K    + D+Y+RP I  KR+ G +E H NG RY S +R D  +D+L++N+KH FFQPC
Sbjct: 656 KNKRPAHINDVYVRPAIDGKRLPGFIEIHQNGIRYQSPLRSDSHIDLLFSNMKHLFFQPC 715

Query: 182 DGELVILLHFHLKNAIMFGKKKHVDVQFY 210
           +GEL++L+H HLK  IM GK+K  DVQFY
Sbjct: 716 EGELIVLIHVHLKAPIMVGKRKTQDVQFY 744

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4WJ02|SPT16_ASPFU FACT complex subunit spt16 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=spt16 PE=3 SV=1

 Score =  127 bits (319), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 71/149 (47%), Positives = 96/149 (64%), Gaps = 13/149 (8%)

Query: 64  LKDLTYRS-SNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEE 122
           L++LT RS  N+R           L  V + I E++K    RE E+KE ED+V+QDKL E
Sbjct: 607 LRNLTLRSKDNER-----------LAQVAQDITELRKNALRREQEKKEMEDVVEQDKLIE 655

Query: 123 SRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTS-VRGDKVDILYNNIKHAFFQPC 181
            R++   KL D+Y+RP +  KR+ G +E H NG RY S  R + VD+L++N+KH FFQPC
Sbjct: 656 IRNRRPVKLPDVYLRPPLDGKRVPGEVEIHQNGLRYMSPFRNEHVDVLFSNVKHLFFQPC 715

Query: 182 DGELVILLHFHLKNAIMFGKKKHVDVQFY 210
             EL++L+H HLK  IM GK+K  DVQFY
Sbjct: 716 AHELIVLIHVHLKTPIMIGKRKTRDVQFY 744

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q2UBF1|SPT16_ASPOR FACT complex subunit spt16 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=spt16 PE=3 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 96/149 (64%), Gaps = 13/149 (8%)

Query: 64  LKDLTYRS-SNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEE 122
           L++LT RS  N+R           L  V + I E++K    RE E+KE ED+V+QDKL E
Sbjct: 629 LRNLTLRSKDNER-----------LAQVAQDITELRKNALRREQEKKEMEDVVEQDKLVE 677

Query: 123 SRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTS-VRGDKVDILYNNIKHAFFQPC 181
            R++   +L D+Y+RP +  KR+ G +E H NG RY S  R + VD+L++N+KH FFQPC
Sbjct: 678 IRNRRPVRLPDVYLRPPLDGKRVPGEVEIHQNGLRYMSPFRNEHVDVLFSNVKHLFFQPC 737

Query: 182 DGELVILLHFHLKNAIMFGKKKHVDVQFY 210
             EL++L+H HLK  IM GK+K  DVQFY
Sbjct: 738 AHELIVLIHVHLKTPIMIGKRKTRDVQFY 766

Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
350417944	1131	PREDICTED: FACT complex subunit spt16-li	0.701	0.130	0.824	8e-69
380019514	1141	PREDICTED: LOW QUALITY PROTEIN: FACT com	0.701	0.129	0.824	1e-68
328790396	1134	PREDICTED: FACT complex subunit spt16 [A	0.701	0.130	0.824	1e-68
340715630	1134	PREDICTED: FACT complex subunit spt16-li	0.701	0.130	0.824	1e-68
383855266	1138	PREDICTED: FACT complex subunit spt16-li	0.701	0.130	0.824	1e-68
322795552	1035	hypothetical protein SINV_12622 [Solenop	0.701	0.142	0.817	2e-68
158286795	1081	AGAP006817-PA [Anopheles gambiae str. PE	0.701	0.136	0.810	2e-68
307199152	1067	FACT complex subunit spt16 [Harpegnathos	0.701	0.138	0.817	3e-68
332025790	1162	FACT complex subunit spt16 [Acromyrmex e	0.701	0.127	0.817	3e-68
242005013	1081	FACT complex subunit SPT16, putative [Pe	0.701	0.136	0.810	5e-68

>gi|350417944|ref|XP_003491657.1| PREDICTED: FACT complex subunit spt16-like [Bombus impatiens]

 Score =  265 bits (677), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 122/148 (82%), Positives = 139/148 (93%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           +K++TYRS+N +EPG+ S PS+NLNT FRLIKEVQKKF++REAEE+EKEDLVKQD L  S
Sbjct: 601 VKEVTYRSTNTKEPGEISAPSSNLNTAFRLIKEVQKKFKNREAEEREKEDLVKQDTLILS 660

Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
           ++KGNPKLKDLY+RPNIV KRMTG LEAHVNGFRYTSVRGDKVDILYNNIK+AFFQPCDG
Sbjct: 661 QNKGNPKLKDLYIRPNIVSKRMTGGLEAHVNGFRYTSVRGDKVDILYNNIKNAFFQPCDG 720

Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
           E++ILLHFHLK+AIMFGKKKHVDVQFYT
Sbjct: 721 EMIILLHFHLKHAIMFGKKKHVDVQFYT 748

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019514|ref|XP_003693649.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit spt16-like [Apis florea]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/148 (82%), Positives = 139/148 (93%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           +K++TYRS+N +EPG+ S PS+NLNT FRLIKEVQKKF++REAEE+EKEDLVKQD L  S
Sbjct: 601 VKEVTYRSTNTKEPGEISAPSSNLNTAFRLIKEVQKKFKNREAEEREKEDLVKQDTLILS 660

Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
           ++KGNPKLKDLY+RPNIV KRMTG LEAHVNGFRYTSVRGDKVDILYNNIK+AFFQPCDG
Sbjct: 661 QNKGNPKLKDLYIRPNIVSKRMTGGLEAHVNGFRYTSVRGDKVDILYNNIKNAFFQPCDG 720

Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
           E++ILLHFHLK+AIMFGKKKHVDVQFYT
Sbjct: 721 EMIILLHFHLKHAIMFGKKKHVDVQFYT 748

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790396|ref|XP_624006.3| PREDICTED: FACT complex subunit spt16 [Apis mellifera]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/148 (82%), Positives = 139/148 (93%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           +K++TYRS+N +EPG+ S PS+NLNT FRLIKEVQKKF++REAEE+EKEDLVKQD L  S
Sbjct: 601 VKEVTYRSTNTKEPGEISAPSSNLNTAFRLIKEVQKKFKNREAEEREKEDLVKQDTLILS 660

Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
           ++KGNPKLKDLY+RPNIV KRMTG LEAHVNGFRYTSVRGDKVDILYNNIK+AFFQPCDG
Sbjct: 661 QNKGNPKLKDLYIRPNIVSKRMTGGLEAHVNGFRYTSVRGDKVDILYNNIKNAFFQPCDG 720

Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
           E++ILLHFHLK+AIMFGKKKHVDVQFYT
Sbjct: 721 EMIILLHFHLKHAIMFGKKKHVDVQFYT 748

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715630|ref|XP_003396313.1| PREDICTED: FACT complex subunit spt16-like [Bombus terrestris]

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/148 (82%), Positives = 139/148 (93%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           +K++TYRS+N +EPG+ S PS+NLNT FRLIKEVQKKF++REAEE+EKEDLVKQD L  S
Sbjct: 601 VKEVTYRSTNTKEPGEISAPSSNLNTAFRLIKEVQKKFKNREAEEREKEDLVKQDTLILS 660

Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
           ++KGNPKLKDLY+RPNIV KRMTG LEAHVNGFRYTSVRGDKVDILYNNIK+AFFQPCDG
Sbjct: 661 QNKGNPKLKDLYIRPNIVSKRMTGGLEAHVNGFRYTSVRGDKVDILYNNIKNAFFQPCDG 720

Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
           E++ILLHFHLK+AIMFGKKKHVDVQFYT
Sbjct: 721 EMIILLHFHLKHAIMFGKKKHVDVQFYT 748

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855266|ref|XP_003703136.1| PREDICTED: FACT complex subunit spt16-like [Megachile rotundata]

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/148 (82%), Positives = 139/148 (93%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           +K++TYRS+N +EPG+ S PS+NLNT FRLIKEVQKKF++REAEE+EKEDLVKQD L  S
Sbjct: 601 VKEVTYRSTNTKEPGEISAPSSNLNTAFRLIKEVQKKFKNREAEEREKEDLVKQDTLILS 660

Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
           ++KGNPKLKDLY+RPNIV KRMTG LEAHVNGFRYTSVRGDKVDILYNNIK+AFFQPCDG
Sbjct: 661 QNKGNPKLKDLYIRPNIVSKRMTGGLEAHVNGFRYTSVRGDKVDILYNNIKNAFFQPCDG 720

Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
           E++ILLHFHLK+AIMFGKKKHVDVQFYT
Sbjct: 721 EMIILLHFHLKHAIMFGKKKHVDVQFYT 748

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795552|gb|EFZ18248.1| hypothetical protein SINV_12622 [Solenopsis invicta]

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/148 (81%), Positives = 138/148 (93%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           +K++TYRS+N +EPG+ S PS+NLNT FRLIKEVQKKF++REAEE+EKEDLVKQD L  S
Sbjct: 601 VKEVTYRSTNTKEPGEISAPSSNLNTAFRLIKEVQKKFKNREAEEREKEDLVKQDTLILS 660

Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
           ++KGNPKLKDLY+RPNIV KRMTG LEAH NGFRYTSVRGDKVDILYNNIK+AFFQPCDG
Sbjct: 661 QNKGNPKLKDLYIRPNIVTKRMTGGLEAHTNGFRYTSVRGDKVDILYNNIKNAFFQPCDG 720

Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
           E++ILLHFHLK+AIMFGKKKHVDVQFYT
Sbjct: 721 EMIILLHFHLKHAIMFGKKKHVDVQFYT 748

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158286795|ref|XP_308929.4| AGAP006817-PA [Anopheles gambiae str. PEST] gi|157020638|gb|EAA04225.5| AGAP006817-PA [Anopheles gambiae str. PEST]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 120/148 (81%), Positives = 139/148 (93%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           +K++TYRS+N +EPG+ + PS+NLNT FRLIKEVQK+F++REAEE+EKEDLVKQD L  S
Sbjct: 600 VKEVTYRSTNTKEPGEIAAPSSNLNTAFRLIKEVQKRFKTREAEEREKEDLVKQDTLVMS 659

Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
           ++KGNPKLKDLY+RPNIV KRMTGSLEAHVNGFRYTSVRGDKVDILYNNIK AFFQPCDG
Sbjct: 660 QNKGNPKLKDLYIRPNIVSKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKSAFFQPCDG 719

Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
           E++ILLHFHLK+AIMFGKKKH+DVQFYT
Sbjct: 720 EMIILLHFHLKHAIMFGKKKHLDVQFYT 747

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199152|gb|EFN79862.1| FACT complex subunit spt16 [Harpegnathos saltator]

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 121/148 (81%), Positives = 138/148 (93%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           +K++TYRS+N +EPG+ S PS+NLNT FRLIKEVQKKF++REAEE+EKEDLVKQD L  S
Sbjct: 566 VKEVTYRSTNTKEPGEISAPSSNLNTAFRLIKEVQKKFKNREAEEREKEDLVKQDTLILS 625

Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
           ++KGNPKLKDLY+RPNIV KRMTG LEAH NGFRYTSVRGDKVDILYNNIK+AFFQPCDG
Sbjct: 626 QNKGNPKLKDLYIRPNIVTKRMTGGLEAHANGFRYTSVRGDKVDILYNNIKNAFFQPCDG 685

Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
           E++ILLHFHLK+AIMFGKKKHVDVQFYT
Sbjct: 686 EMIILLHFHLKHAIMFGKKKHVDVQFYT 713

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025790|gb|EGI65947.1| FACT complex subunit spt16 [Acromyrmex echinatior]

 Score =  263 bits (672), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 121/148 (81%), Positives = 138/148 (93%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           +K++TYRS+N +EPG+ S PS+NLNT FRLIKEVQKKF++REAEE+EKEDLVKQD L  S
Sbjct: 601 VKEVTYRSTNTKEPGEISAPSSNLNTAFRLIKEVQKKFKNREAEEREKEDLVKQDTLILS 660

Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
           ++KGNPKLKDLY+RPNIV KRMTG LEAH NGFRYTSVRGDKVDILYNNIK+AFFQPCDG
Sbjct: 661 QNKGNPKLKDLYIRPNIVTKRMTGGLEAHTNGFRYTSVRGDKVDILYNNIKNAFFQPCDG 720

Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
           E++ILLHFHLK+AIMFGKKKHVDVQFYT
Sbjct: 721 EMIILLHFHLKHAIMFGKKKHVDVQFYT 748

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005013|ref|XP_002423369.1| FACT complex subunit SPT16, putative [Pediculus humanus corporis] gi|212506413|gb|EEB10631.1| FACT complex subunit SPT16, putative [Pediculus humanus corporis]

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 120/148 (81%), Positives = 138/148 (93%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           LK++TYRSSN +EPG+ +TPS+NLN  FRLIKEVQKKF+SREAEE+EKEDLVKQD L  S
Sbjct: 566 LKEITYRSSNTKEPGEQTTPSSNLNNAFRLIKEVQKKFKSREAEEREKEDLVKQDTLILS 625

Query: 124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
           ++KGNPKLKDLY+RPNIV KRMTG LEAH NGFRYTSVRGDKVDILYNNI++AFFQPCDG
Sbjct: 626 QNKGNPKLKDLYIRPNIVSKRMTGVLEAHTNGFRYTSVRGDKVDILYNNIRNAFFQPCDG 685

Query: 184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
           E++ILLHFHLK+AIMFGKKKH+DVQF+T
Sbjct: 686 EMIILLHFHLKHAIMFGKKKHIDVQFFT 713

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
UNIPROTKB|Q9W603	1035	supt16h "FACT complex subunit	0.715	0.145	0.720	2.2e-61
FB|FBgn0002183	1083	dre4 "dre4" [Drosophila melano	0.701	0.136	0.797	5.1e-60
ZFIN|ZDB-GENE-031118-96	1077	supt16h "suppressor of Ty 16 h	0.715	0.140	0.714	2e-57
UNIPROTKB|E1BNP8	1047	SUPT16H "Uncharacterized prote	0.715	0.144	0.701	4.7e-57
UNIPROTKB|E2REU7	1047	SUPT16H "Uncharacterized prote	0.715	0.144	0.701	4.7e-57
RGD|1310032	1047	Supt16h "suppressor of Ty 16 h	0.715	0.144	0.701	4.7e-57
UNIPROTKB|F1S8K5	1048	SUPT16H "Uncharacterized prote	0.715	0.144	0.701	4.7e-57
MGI|MGI:1890948	1047	Supt16 "suppressor of Ty 16" [	0.715	0.144	0.694	6.1e-57
UNIPROTKB|Q9Y5B9	1047	SUPT16H "FACT complex subunit	0.715	0.144	0.701	1e-56
WB|WBGene00018849	1030	F55A3.3 [Caenorhabditis elegan	0.701	0.143	0.684	1.2e-52

UNIPROTKB|Q9W603 supt16h "FACT complex subunit SPT16" [Xenopus laevis (taxid:8355)]

 Score = 605 (218.0 bits), Expect = 2.2e-61, Sum P(2) = 2.2e-61
 Identities = 111/154 (72%), Positives = 132/154 (85%)

Query:    61 NPK---LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQ 117
             NP+   +K++TYR+SN + PG PS PS NL   FR+IKEVQK++++REAEEKEKE +VKQ
Sbjct:   591 NPEATFVKEITYRASNVKTPGDPSVPSLNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQ 650

Query:   118 DKLEESRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAF 177
             D L  + ++ NPKLKDLY+RPNI  KRM GSLEAHVNGFR+TSVRGDKVDILYNNIKHA 
Sbjct:   651 DSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHAL 710

Query:   178 FQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT 211
             FQPCDGE++I+LHFHLKNAIMFGKK+H DVQFYT
Sbjct:   711 FQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYT 744

GO:0005515 "protein binding" evidence=IPI

FB|FBgn0002183 dre4 "dre4" [Drosophila melanogaster (taxid:7227)]

 Score = 623 (224.4 bits), Expect = 5.1e-60, P = 5.1e-60
 Identities = 118/148 (79%), Positives = 132/148 (89%)

Query:    64 LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
             +K++TYRSSN +E G+   PS NLN  FRLIKEVQK+F++REAEE+EKEDLVKQD L  S
Sbjct:   601 VKEVTYRSSNVKEHGEVGAPSANLNNAFRLIKEVQKRFKTREAEEREKEDLVKQDTLILS 660

Query:   124 RSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDG 183
             ++KGNPKLKDLY+RPNIV KRMTGSLEAH NGFRY SVRGDKVDILYNNIK AFFQPCDG
Sbjct:   661 QNKGNPKLKDLYIRPNIVTKRMTGSLEAHSNGFRYISVRGDKVDILYNNIKSAFFQPCDG 720

Query:   184 ELVILLHFHLKNAIMFGKKKHVDVQFYT 211
             E++ILLHFHLK AIMFGKKKHVDVQFYT
Sbjct:   721 EMIILLHFHLKYAIMFGKKKHVDVQFYT 748

GO:0006268 "DNA unwinding involved in replication" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0001672 "regulation of chromatin assembly or disassembly" evidence=IMP

GO:0035101 "FACT complex" evidence=IDA;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-031118-96 supt16h "suppressor of Ty 16 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 599 (215.9 bits), Expect = 2.0e-57, P = 2.0e-57
 Identities = 110/154 (71%), Positives = 131/154 (85%)

Query:    61 NPK---LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQ 117
             NP+   +K++TYR+SN + PG  S PSTNL   FR+IKEVQK++++REAEEKEKE +VKQ
Sbjct:   634 NPEATFVKEITYRASNLKSPGDHSVPSTNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQ 693

Query:   118 DKLEESRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAF 177
             D L  + ++ NPKLKDLY+RPNI  KRM GSLEAH NGFR+TSVRGDKVDILYNNIKHA 
Sbjct:   694 DSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHTNGFRFTSVRGDKVDILYNNIKHAI 753

Query:   178 FQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT 211
             FQPCDGE++I+LHFHLKNAIMFGKK+H DVQFYT
Sbjct:   754 FQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYT 787

GO:0009987 "cellular process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E1BNP8 SUPT16H "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 595 (214.5 bits), Expect = 4.7e-57, P = 4.7e-57
 Identities = 108/154 (70%), Positives = 132/154 (85%)

Query:    61 NPK---LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQ 117
             NP+   +K++TYR+SN + PG+ + P+ NL   FR+IKEVQK++++REAEEKEKE +VKQ
Sbjct:   589 NPEATFVKEITYRASNMKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQ 648

Query:   118 DKLEESRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAF 177
             D L  + ++ NPKLKDLY+RPNI  KRM GSLEAHVNGFR+TSVRGDKVDILYNNIKHA 
Sbjct:   649 DSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHAL 708

Query:   178 FQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT 211
             FQPCDGE++I+LHFHLKNAIMFGKK+H DVQFYT
Sbjct:   709 FQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYT 742

GO:0009987 "cellular process" evidence=IEA

UNIPROTKB|E2REU7 SUPT16H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 595 (214.5 bits), Expect = 4.7e-57, P = 4.7e-57
 Identities = 108/154 (70%), Positives = 132/154 (85%)

Query:    61 NPK---LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQ 117
             NP+   +K++TYR+SN + PG+ + P+ NL   FR+IKEVQK++++REAEEKEKE +VKQ
Sbjct:   589 NPEATFVKEITYRASNMKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQ 648

Query:   118 DKLEESRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAF 177
             D L  + ++ NPKLKDLY+RPNI  KRM GSLEAHVNGFR+TSVRGDKVDILYNNIKHA 
Sbjct:   649 DSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHAL 708

Query:   178 FQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT 211
             FQPCDGE++I+LHFHLKNAIMFGKK+H DVQFYT
Sbjct:   709 FQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYT 742

GO:0009987 "cellular process" evidence=IEA

RGD|1310032 Supt16h "suppressor of Ty 16 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 595 (214.5 bits), Expect = 4.7e-57, P = 4.7e-57
 Identities = 108/154 (70%), Positives = 132/154 (85%)

Query:    61 NPK---LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQ 117
             NP+   +K++TYR+SN + PG+ + P+ NL   FR+IKEVQK++++REAEEKEKE +VKQ
Sbjct:   589 NPEATFVKEITYRASNMKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQ 648

Query:   118 DKLEESRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAF 177
             D L  + ++ NPKLKDLY+RPNI  KRM GSLEAHVNGFR+TSVRGDKVDILYNNIKHA 
Sbjct:   649 DSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHAL 708

Query:   178 FQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT 211
             FQPCDGE++I+LHFHLKNAIMFGKK+H DVQFYT
Sbjct:   709 FQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYT 742

GO:0009987 "cellular process" evidence=IEA

UNIPROTKB|F1S8K5 SUPT16H "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 595 (214.5 bits), Expect = 4.7e-57, P = 4.7e-57
 Identities = 108/154 (70%), Positives = 132/154 (85%)

Query:    61 NPK---LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQ 117
             NP+   +K++TYR+SN + PG+ + P+ NL   FR+IKEVQK++++REAEEKEKE +VKQ
Sbjct:   589 NPEATFVKEITYRASNMKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQ 648

Query:   118 DKLEESRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAF 177
             D L  + ++ NPKLKDLY+RPNI  KRM GSLEAHVNGFR+TSVRGDKVDILYNNIKHA 
Sbjct:   649 DSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHAL 708

Query:   178 FQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT 211
             FQPCDGE++I+LHFHLKNAIMFGKK+H DVQFYT
Sbjct:   709 FQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYT 742

GO:0009987 "cellular process" evidence=IEA

MGI|MGI:1890948 Supt16 "suppressor of Ty 16" [Mus musculus (taxid:10090)]

 Score = 594 (214.2 bits), Expect = 6.1e-57, P = 6.1e-57
 Identities = 107/154 (69%), Positives = 132/154 (85%)

Query:    61 NPK---LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQ 117
             NP+   +K++TYR+SN + PG+ + P+ NL   FR+IKEVQK++++REAEEKEKE +VKQ
Sbjct:   589 NPEATFVKEITYRASNMKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQ 648

Query:   118 DKLEESRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAF 177
             D L  + ++ NPKLKDLY+RPNI  KRM GSLEAHVNGFR+TSVRGDKVDILYNNIKHA 
Sbjct:   649 DSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHAL 708

Query:   178 FQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT 211
             FQPCDGE++I+LHFHLKNA+MFGKK+H DVQFYT
Sbjct:   709 FQPCDGEMIIVLHFHLKNAVMFGKKRHTDVQFYT 742

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0009987 "cellular process" evidence=IEA

UNIPROTKB|Q9Y5B9 SUPT16H "FACT complex subunit SPT16" [Homo sapiens (taxid:9606)]

 Score = 592 (213.5 bits), Expect = 1.0e-56, P = 1.0e-56
 Identities = 108/154 (70%), Positives = 132/154 (85%)

Query:    61 NPK---LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQ 117
             NP+   +K++TYR+SN + PG+ + P+ NL   FR+IKEVQK++++REAEEKEKE +VKQ
Sbjct:   589 NPEATFVKEITYRASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQ 648

Query:   118 DKLEESRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAF 177
             D L  + ++ NPKLKDLY+RPNI  KRM GSLEAHVNGFR+TSVRGDKVDILYNNIKHA 
Sbjct:   649 DSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHAL 708

Query:   178 FQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT 211
             FQPCDGE++I+LHFHLKNAIMFGKK+H DVQFYT
Sbjct:   709 FQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYT 742

GO:0006260 "DNA replication" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0006337 "nucleosome disassembly" evidence=TAS

GO:0032786 "positive regulation of DNA-dependent transcription, elongation" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0050434 "positive regulation of viral transcription" evidence=TAS

WB|WBGene00018849 F55A3.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 554 (200.1 bits), Expect = 1.2e-52, P = 1.2e-52
 Identities = 102/149 (68%), Positives = 129/149 (86%)

Query:    64 LKDLTYRSSNQREPGQPST-PSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEE 122
             +K+LT+R+SN ++    ST PS NL+T FRLIKE+QK+F++ EAEE+EKE  VKQDKL  
Sbjct:   594 MKELTFRASNIKDHHSDSTAPSHNLSTAFRLIKEMQKRFKTEEAEEREKEGAVKQDKLIL 653

Query:   123 SRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCD 182
             S++K NPKLKDL +RPNI+ KR+TGSLEAH NGFRYTS+RGD++D+LYNNIKHAFFQPCD
Sbjct:   654 SQNKLNPKLKDLLIRPNIIQKRITGSLEAHTNGFRYTSLRGDRIDVLYNNIKHAFFQPCD 713

Query:   183 GELVILLHFHLKNAIMFGKKKHVDVQFYT 211
              E++ILLHFHLKN +++GKKK+ DVQFYT
Sbjct:   714 NEMIILLHFHLKNPVLWGKKKYKDVQFYT 742

GO:0009987 "cellular process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006997 "nucleus organization" evidence=IMP

GO:0051301 "cell division" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8IRG6	SPT16_DROME	No assigned EC number	0.7972	0.7014	0.1366	yes	N/A
Q920B9	SP16H_MOUSE	No assigned EC number	0.7094	0.7014	0.1413	yes	N/A
Q9Y5B9	SP16H_HUMAN	No assigned EC number	0.7162	0.7014	0.1413	yes	N/A
Q9N5R9	SPT16_CAEEL	No assigned EC number	0.6845	0.7014	0.1436	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	211
pfam08644	152	pfam08644, SPT16, FACT complex subunit (SPT16/CDC6	9e-32
COG5406	1001	COG5406, COG5406, Nucleosome binding factor SPN, S	3e-31
pfam08644	152	pfam08644, SPT16, FACT complex subunit (SPT16/CDC6	1e-15

>gnl|CDD|219951 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68)

 Score =  112 bits (282), Expect = 9e-32
 Identities = 46/96 (47%), Positives = 66/96 (68%), Gaps = 11/96 (11%)

Query: 64  LKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEES 123
           +K+LT+RS + +          +L  VF+ IKE+QK+ + RE E KEK D+V+Q+KL  +
Sbjct: 67  IKELTFRSKDSK----------HLQDVFKAIKELQKRVKKRETERKEKADVVEQEKLILN 116

Query: 124 RSKGNPKLKDLYMRPNIV-MKRMTGSLEAHVNGFRY 158
           R+K  P+LKD+Y+RP I   KR+ G+LEAH NGFRY
Sbjct: 117 RNKRPPRLKDVYIRPTITGRKRVPGTLEAHENGFRY 152

Proteins in this family are subunits the FACT complex. The FACT complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin. Length = 152

>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

 Score =  119 bits (300), Expect = 3e-31
 Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 12/158 (7%)

Query: 55  ESRSKGNPKLKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDL 114
               +G   L+ +T RS               ++ +F+ I +++K    RE E KE  D+
Sbjct: 588 PCEQRGEQFLRSITSRSIR----------GNRMSDLFKEINDLKKGATKRETERKEDADV 637

Query: 115 VKQDKLEESRSKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTS-VRGD-KVDILYNN 172
           ++QDKL E +           +RP    KR  G+LE H NG R+ S +R D  +DIL++N
Sbjct: 638 LEQDKLIERKLSRTDVYMKTDVRPGSDGKRKPGNLEIHENGIRFQSPLRSDSHIDILFSN 697

Query: 173 IKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQFY 210
           IKH FFQ C+GEL++++HFHLK+ I+ GK+K  DVQFY
Sbjct: 698 IKHLFFQECNGELIVIIHFHLKSPILTGKRKVQDVQFY 735

Length = 1001

>gnl|CDD|219951 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68)

 Score = 70.7 bits (174), Expect = 1e-15
 Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 13/81 (16%)

Query: 1   TYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKG 60
           T+RS + +          +L  VF+ IKE+QK+ + RE E KEK D+V+Q+KL  +R+K 
Sbjct: 71  TFRSKDSK----------HLQDVFKAIKELQKRVKKRETERKEKADVVEQEKLILNRNKR 120

Query: 61  NPKLKDLTYR---SSNQREPG 78
            P+LKD+  R   +  +R PG
Sbjct: 121 PPRLKDVYIRPTITGRKRVPG 141

Proteins in this family are subunits the FACT complex. The FACT complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin. Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
KOG1189|consensus	960		100.0
COG5406	1001	Nucleosome binding factor SPN, SPT16 subunit [Tran	100.0
PF08644	152	SPT16: FACT complex subunit (SPT16/CDC68); InterPr	99.97
PF08644	152	SPT16: FACT complex subunit (SPT16/CDC68); InterPr	99.88
KOG1189|consensus	960		99.7
COG5406	1001	Nucleosome binding factor SPN, SPT16 subunit [Tran	99.38

>KOG1189|consensus

Probab=100.00  E-value=2.3e-59  Score=456.07  Aligned_cols=145  Identities=68%  Similarity=1.074  Sum_probs=140.7

Q ss_pred             cCCCCccceeeeeecCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHhHHHHHHhhhccccccceeeccCCCCCccccccc
Q psy16786         57 RSKGNPKLKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLYM  136 (211)
Q Consensus        57 k~~~~~~LkeL~~Rp~~~r~~G~le~h~n~l~~~~~~Ikel~K~~~~re~e~~e~~~~v~Q~~L~~~~~~~~~~L~dv~i  136 (211)
                      .++.+.||+++++|++++          ++++++|++||+|+|++++||+|++|++++|+||+|++++++++|+|+||||
T Consensus       544 ~~~~a~flkeit~rs~~~----------~~~s~~f~~ik~l~k~~~~re~e~~eke~~v~qdkL~~~kn~~~p~L~dlyi  613 (960)
T KOG1189|consen  544 ENPGAQFLKEITFRSSNG----------KRSSEAFRQIKELQKRFKSREAERKEKEDLVKQDKLIESKNKSNPKLKDLYI  613 (960)
T ss_pred             CCchhhhhhheeeeecCC----------cchHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhHHHHhhccCCCchhheEe
Confidence            346778999999999998          4789999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCcccceEEEeecceeeeccCCCeeeEeecccceecccCCCCceEEEEEeeeccceeecccccccccccC
Q psy16786        137 RPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT  211 (211)
Q Consensus       137 RP~~~~kr~~G~LE~H~NG~Ry~s~r~~~vDilf~NIKHafFQp~~~E~ivliHfhLk~pImiGkKkt~DVQFy~  211 (211)
                      ||+|.|||++|+||||+|||||+|.|+++|||||+||||||||||++|||+|||||||||||+||||++|||||+
T Consensus       614 Rp~i~~Kr~~G~lEaH~NGfRy~s~R~~~vdiLfsNIKhafFqpc~~Emi~llHfHLknpIm~GkkK~~dVQFY~  688 (960)
T KOG1189|consen  614 RPNIDTKRIPGSLEAHENGFRYQSLRDERVDILFSNIKHAFFQPCEGEMIILLHFHLKNPIMVGKKKTKDVQFYR  688 (960)
T ss_pred             cCCccccccccceeeecCceeeeeccccchhhhhhhhhhhhcCccccceeeEeeehhccceeecccceeeeeeee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999996

>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

Probab=100.00  E-value=6.8e-47  Score=364.81  Aligned_cols=143  Identities=43%  Similarity=0.721  Sum_probs=137.7

Q ss_pred             CCCccceeeeeecCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHhHHHHHHhhhccccccceeeccCCCCCccccccccc
Q psy16786         59 KGNPKLKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLYMRP  138 (211)
Q Consensus        59 ~~~~~LkeL~~Rp~~~r~~G~le~h~n~l~~~~~~Ikel~K~~~~re~e~~e~~~~v~Q~~L~~~~~~~~~~L~dv~iRP  138 (211)
                      ++..||+.+++||.++          ++|.++|++|.+|+|.+.+||+|++|-+|+++|++|++++.+++.++.+++|||
T Consensus       592 ~~~qF~rsit~rS~~g----------~rms~~fk~I~dlKK~atkrEterke~adv~eqdKlie~k~~rt~~~~~~~vRp  661 (1001)
T COG5406         592 RGEQFLRSITSRSIRG----------NRMSDLFKEINDLKKGATKRETERKEDADVLEQDKLIERKLSRTDVYMKTDVRP  661 (1001)
T ss_pred             cchhhhhheeeeeccC----------ccHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhccccccchhhhccccc
Confidence            5567999999999987          799999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccceEEEeecceeeecc-CCC-eeeEeecccceecccCCCCceEEEEEeeeccceeecccccccccccC
Q psy16786        139 NIVMKRMTGSLEAHVNGFRYTSV-RGD-KVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKKHVDVQFYT  211 (211)
Q Consensus       139 ~~~~kr~~G~LE~H~NG~Ry~s~-r~~-~vDilf~NIKHafFQp~~~E~ivliHfhLk~pImiGkKkt~DVQFy~  211 (211)
                      +++|||.+|+||+|+||+||+|+ |.| +|||||+||||+|||||.+|+|||||||||+|||+||||++|||||+
T Consensus       662 ~~d~KR~pg~~eiHeNGiRfqsplrsds~idiLFSNikhlfFq~c~gEliviiH~HLk~PIl~GkrKvqdVQFYR  736 (1001)
T COG5406         662 GSDGKRKPGNLEIHENGIRFQSPLRSDSHIDILFSNIKHLFFQECNGELIVIIHFHLKSPILTGKRKVQDVQFYR  736 (1001)
T ss_pred             CCCcCccCccEEEecCceeecCCcccCceeEEeeccchhheeccCCceEEEEEEEeecCceecCCceeeeeeeee
Confidence            99999999999999999999997 754 89999999999999999999999999999999999999999999997

>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p

Probab=99.97  E-value=1.8e-32  Score=226.74  Aligned_cols=91  Identities=53%  Similarity=0.841  Sum_probs=87.6

Q ss_pred             CCCCccceeeeeecCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHhHHHHHHhhhccccccceeeccCCCCCcccccccc
Q psy16786         58 SKGNPKLKDLTYRSSNQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLYMR  137 (211)
Q Consensus        58 ~~~~~~LkeL~~Rp~~~r~~G~le~h~n~l~~~~~~Ikel~K~~~~re~e~~e~~~~v~Q~~L~~~~~~~~~~L~dv~iR  137 (211)
                      .+.+.|||||+||+++.+          +|++++++||||||++++||+|++|++++|+||+|++++++++|+|+|||||
T Consensus        61 ~~~~~fiKeltfRs~d~~----------~~~~v~~~Ikel~k~~~~re~E~~e~~~~v~QekL~~~~~~~~~~L~dl~iR  130 (152)
T PF08644_consen   61 DPDAIFIKELTFRSKDSR----------HLQEVFRQIKELQKRVKQREQERREKADLVEQEKLILSKNRRPPRLKDLYIR  130 (152)
T ss_pred             CCCCeEEEEEEEEeCCch----------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccceEEccCCCCCccCCceEC
Confidence            467899999999999984          6999999999999999999999999999999999999998999999999999


Q ss_pred             cCCCC-CcccceEEEeecceee
Q psy16786        138 PNIVM-KRMTGSLEAHVNGFRY  158 (211)
Q Consensus       138 P~~~~-kr~~G~LE~H~NG~Ry  158 (211)
                      |+++| ||++|+||||+|||||
T Consensus       131 P~~~g~kr~~G~LEaH~NGfRy  152 (152)
T PF08644_consen  131 PAIGGRKRVPGTLEAHTNGFRY  152 (152)
T ss_pred             CCCccccccCceEEEecCcccC
Confidence            99999 9999999999999999

The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).

>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p

Probab=99.88  E-value=1e-23  Score=174.65  Aligned_cols=83  Identities=40%  Similarity=0.544  Sum_probs=79.1

Q ss_pred             CCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhhHHHHHHHhccccccccccccCCCCccceeeeeecCCC---CCCCCCCC
Q psy16786          6 NQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRSSNQ---REPGQPST   82 (211)
Q Consensus         6 ~~k~~~~rS~d~~~l~~v~r~IKeL~K~~k~RE~E~ke~adlV~QdkLi~~k~~~~~~LkeL~~Rp~~~---r~~G~le~   82 (211)
                      -.||.+|||.|++||++++++||||||++++||+|++|++|+|+||+|+++++++++.|++||+||+.+   |.+|+||+
T Consensus        66 fiKeltfRs~d~~~~~~v~~~Ikel~k~~~~re~E~~e~~~~v~QekL~~~~~~~~~~L~dl~iRP~~~g~kr~~G~LEa  145 (152)
T PF08644_consen   66 FIKELTFRSKDSRHLQEVFRQIKELQKRVKQREQERREKADLVEQEKLILSKNRRPPRLKDLYIRPAIGGRKRVPGTLEA  145 (152)
T ss_pred             EEEEEEEEeCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccceEEccCCCCCccCCceECCCCccccccCceEEE
Confidence            368899999999999999999999999999999999999999999999999989999999999999996   68999999


Q ss_pred             CCccHH
Q psy16786         83 PSTNLN   88 (211)
Q Consensus        83 h~n~l~   88 (211)
                      |+|||.
T Consensus       146 H~NGfR  151 (152)
T PF08644_consen  146 HTNGFR  151 (152)
T ss_pred             ecCccc
Confidence            999984

The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).

>KOG1189|consensus

Probab=99.70  E-value=5.3e-18  Score=167.28  Aligned_cols=83  Identities=49%  Similarity=0.634  Sum_probs=79.3

Q ss_pred             CCCCCCCCCCCCCcHHHHHHHHHHHHHHHhhhHHHHHHHhccccccccccccCCCCccceeeeeecCCC--CCCCCCCCC
Q psy16786          6 NQREPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRSSNQ--REPGQPSTP   83 (211)
Q Consensus         6 ~~k~~~~rS~d~~~l~~v~r~IKeL~K~~k~RE~E~ke~adlV~QdkLi~~k~~~~~~LkeL~~Rp~~~--r~~G~le~h   83 (211)
                      =.|+.+|||.|++|++++||+||+|+|++++||+|++|+|++|+||+|++++++.++.|++||+||.+.  |.||+||+|
T Consensus       550 flkeit~rs~~~~~~s~~f~~ik~l~k~~~~re~e~~eke~~v~qdkL~~~kn~~~p~L~dlyiRp~i~~Kr~~G~lEaH  629 (960)
T KOG1189|consen  550 FLKEITFRSSNGKRSSEAFRQIKELQKRFKSREAERKEKEDLVKQDKLIESKNKSNPKLKDLYIRPNIDTKRIPGSLEAH  629 (960)
T ss_pred             hhhheeeeecCCcchHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhHHHHhhccCCCchhheEecCCccccccccceeee
Confidence            357889999999999999999999999999999999999999999999999999999999999999997  999999999


Q ss_pred             CccHH
Q psy16786         84 STNLN   88 (211)
Q Consensus        84 ~n~l~   88 (211)
                      +||+.
T Consensus       630 ~NGfR  634 (960)
T KOG1189|consen  630 ENGFR  634 (960)
T ss_pred             cCcee
Confidence            99974

>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]

Probab=99.38  E-value=2.1e-13  Score=133.66  Aligned_cols=80  Identities=24%  Similarity=0.371  Sum_probs=76.3

Q ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHhhhHHHHHHHhccccccccccccCCCCccceeeeeecCCC--CCCCCCCCCCcc
Q psy16786          9 EPGQPSTPSTNLNTVFRLIKEVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRSSNQ--REPGQPSTPSTN   86 (211)
Q Consensus         9 ~~~~rS~d~~~l~~v~r~IKeL~K~~k~RE~E~ke~adlV~QdkLi~~k~~~~~~LkeL~~Rp~~~--r~~G~le~h~n~   86 (211)
                      .-++||.++.+|.++|++|.+|+|.+++||+|++|.||+++|||||+++..+...+..+++||..+  |.||.||+|+||
T Consensus       599 sit~rS~~g~rms~~fk~I~dlKK~atkrEterke~adv~eqdKlie~k~~rt~~~~~~~vRp~~d~KR~pg~~eiHeNG  678 (1001)
T COG5406         599 SITSRSIRGNRMSDLFKEINDLKKGATKRETERKEDADVLEQDKLIERKLSRTDVYMKTDVRPGSDGKRKPGNLEIHENG  678 (1001)
T ss_pred             heeeeeccCccHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhccccccchhhhcccccCCCcCccCccEEEecCc
Confidence            357899999999999999999999999999999999999999999999999999999999999997  899999999999


Q ss_pred             HH
Q psy16786         87 LN   88 (211)
Q Consensus        87 l~   88 (211)
                      +.
T Consensus       679 iR  680 (1001)
T COG5406         679 IR  680 (1001)
T ss_pred             ee
Confidence            64

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
4ioy_X	285	Structure Of The Spt16 Middle Domain Reveals Functi		1e-16

>pdb|4IOY|X Chain X, Structure Of The Spt16 Middle Domain Reveals Functional Features Of The Histone Chaperone Fact Length = 285

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 130 KLKDLYMRPNIVMKRMTGSLEAHVNGFRYTS-VRGD-KVDILYNNIKHAFFQPCDGELVI 187
           +L  +++RPN   KR+  ++  H NG R+ S +R D ++DIL++NIK+  FQ C GEL++
Sbjct: 13  RLDQIFVRPNPDTKRVPSTVFIHENGIRFQSPLRTDSRIDILFSNIKNLIFQSCKGELIV 72
Query: 188 LLHFHLKNAIMFGKKKHVDVQFY 210
           ++H HLKN I+ GKKK  DVQFY
Sbjct: 73  VIHIHLKNPILMGKKKIQDVQFY 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 33/242 (13%), Positives = 65/242 (26%), Gaps = 86/242 (35%)

Query: 28  KEVQKKFRSREAEEKEKEDL------VKQDKLEESRSKGNP--------KLKDLTYRSSN 73
             +     S      E + L       +   L       NP         ++D      N
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 74  QREPGQPSTPSTNLNTVFRLIK---------EVQKKFRS-------------------RE 105
            +          N + +  +I+         E +K F                      +
Sbjct: 347 WKHV--------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 106 AEEKEKEDLVKQDKLEESRS--KGNPK-----LKDLYMRPNIVMKRMTGSLEAH---VNG 155
             + +   +V  +KL    S  +  PK     +  +Y+    +  ++      H   V+ 
Sbjct: 399 VIKSDVMVVV--NKLH-KYSLVEKQPKESTISIPSIYLE---LKVKLENEYALHRSIVD- 451

Query: 156 FRYTSVRG-DKVDILYNNIKHAFFQPCDGELVILLHF--HLKNAIMFGK-----KKHVDV 207
             Y   +  D  D++   +   F+           H   HLKN     +        +D 
Sbjct: 452 -HYNIPKTFDSDDLIPPYLDQYFYS----------HIGHHLKNIEHPERMTLFRMVFLDF 500

Query: 208 QF 209
           +F
Sbjct: 501 RF 502

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 32/254 (12%), Positives = 72/254 (28%), Gaps = 79/254 (31%)

Query: 18  TNLNTVFRLIKEVQKKFRSREAEE--------KEKEDLVKQ-DKLEESR-------SKGN 61
              + +          F  ++ ++        +E + ++   D +  +        SK  
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76

Query: 62  PKLK-------DLTYR---SSNQREPGQPSTPSTN----LNTVFRLIKEVQKKFRSREAE 107
             ++        + Y+   S  + E  QPS  +       + ++   +   K   SR   
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL-- 134

Query: 108 EKEKEDLVKQDKLEESRSKGNPKLKDLYMRPNIVMKRMTGS----LEAHV-NGFRYTSVR 162
            +    L  +  L E R              N+++  + GS    +   V   ++     
Sbjct: 135 -QPYLKL--RQALLELRPA-----------KNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 163 GDKV------------DI------LYNNIKHAFFQPCDGELVILLHFH-LKNAI--MFGK 201
             K+             +      L   I   +    D    I L  H ++  +  +   
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 202 KKHV-------DVQ 208
           K +        +VQ
Sbjct: 241 KPYENCLLVLLNVQ 254

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 25/91 (27%)

Query: 29  EVQKKFRSREAEEKEKEDLVKQDKLEESRSKGNPKLKDLTYRSSNQREPGQPSTPSTNLN 88
           E  +K+R  + +  ++ D   +   +E R K    L++   R S Q E            
Sbjct: 85  ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE------------ 132

Query: 89  TVFRLIKEVQKKFRSREAEE----KEKEDLV 115
                    + K  +R A++    +   D++
Sbjct: 133 ---------KNKINNRIADKAFYQQPDADII 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
2gcl_A	261	Hypothetical 63.0 kDa protein in DAK1-ORC1 interge	81.25

>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A

Probab=81.25  E-value=1.8  Score=37.85  Aligned_cols=74  Identities=9%  Similarity=0.171  Sum_probs=48.4

Q ss_pred             CCCCCcccccccccCCCCCcccceEEEeecceeeeccCCCeeeEeecccceecccCCCCceEEEEEeeeccceeecccc
Q psy16786        125 SKGNPKLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKK  203 (211)
Q Consensus       125 ~~~~~~L~dv~iRP~~~~kr~~G~LE~H~NG~Ry~s~r~~~vDilf~NIKHafFQp~~~E~ivliHfhLk~pImiGkKk  203 (211)
                      +.....+.||.+=-+    |--=++|++.+.+|.... .-...|.|+||+++|+=|--.+.-+.+=+.|..||.-|..+
T Consensus        22 gd~i~~~~dv~~ltP----RGrydi~~~~~~lrl~gk-t~dyki~~~~I~r~f~LP~pd~~~~~~vi~ld~PirqGqt~   95 (261)
T 2gcl_A           22 GDAIVSFQDVFFTTP----RGRYDIDIYKNSIRLRGK-TYEYKLQHRQIQRIVSLPKADDIHHMMVMAIEPPLRQGQTT   95 (261)
T ss_dssp             TTSSEEEEEEEEEET----TEEEEEEECSSEEEEEES-SCEEEEEGGGEEEEEEEECTTSSEEEEEEEEEEEEEETTEE
T ss_pred             CceEEEEcCceEEcC----CCceEEEEecCcEEEeCC-cccceechhhEEEEEEccCCCcCceEEEEecCCCccCCCcc
Confidence            333345667654332    222368889988887642 22377999999999998875553333334478999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d2gcla1	238	b.55.1.10 (A:237-474) FACT complex subunit POB3, m	3e-12

>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 238

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: SSRP1-like
domain: FACT complex subunit POB3, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 7/76 (9%)

Query: 140 IVMKRMTGSLEAHVNGFRYTSVRGDKVD--ILYNNIKHAFFQPCDGELVILLHFHLKNAI 197
               R    ++ + N  R    RG   +  + +  I+     P   ++  ++   ++  +
Sbjct: 14  FTTPRGRYDIDIYKNSIRL---RGKTYEYKLQHRQIQRIVSLPKADDIHHMMVMAIEPPL 70

Query: 198 MFGKKK--HVDVQFYT 211
             G+     + +QF  
Sbjct: 71  RQGQTTYPFLVLQFQK 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d2gcla1	238	FACT complex subunit POB3, middle domain {Baker's	99.53
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	87.3

>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: SSRP1-like
domain: FACT complex subunit POB3, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=1.5e-15  Score=129.49  Aligned_cols=77  Identities=12%  Similarity=0.220  Sum_probs=62.6

Q ss_pred             cccccccccCCCCCcccceEEEeecceeeeccCCCeeeEeecccceecccCCCCceEEEEEeeeccceeecccc--cccc
Q psy16786        130 KLKDLYMRPNIVMKRMTGSLEAHVNGFRYTSVRGDKVDILYNNIKHAFFQPCDGELVILLHFHLKNAIMFGKKK--HVDV  207 (211)
Q Consensus       130 ~L~dv~iRP~~~~kr~~G~LE~H~NG~Ry~s~r~~~vDilf~NIKHafFQp~~~E~ivliHfhLk~pImiGkKk--t~DV  207 (211)
                      .+.||.+=-+    |-..+||+|.||+|+.... -...|+|+||+|||||||.+|+.+++||||++||+.|+++  +.++
T Consensus         8 ~~~dv~~~~P----Rgk~~i~~~~~~lrl~g~~-~d~~I~~~~I~~~f~lP~p~~~~~~~~~~L~ppi~~G~t~y~~~v~   82 (238)
T d2gcla1           8 SFQDVFFTTP----RGRYDIDIYKNSIRLRGKT-YEYKLQHRQIQRIVSLPKADDIHHMMVMAIEPPLRQGQTTYPFLVL   82 (238)
T ss_dssp             EEEEEEEEET----TEEEEEEECSSEEEEEESS-CEEEEEGGGEEEEEEEECTTSSEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEeCceEEcC----CCceEEEEecCeEEEECCc-cceEEEhhheeEEEEccCCCCceEEEEEEecChhhcCCccCceEEE
Confidence            4555543322    3334799999999997532 2355999999999999999999999999999999999999  7899


Q ss_pred             cccC
Q psy16786        208 QFYT  211 (211)
Q Consensus       208 QFy~  211 (211)
                      |||.
T Consensus        83 qf~~   86 (238)
T d2gcla1          83 QFQK   86 (238)
T ss_dssp             EEET
T ss_pred             EEcc
Confidence            9985

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.30  E-value=0.31  Score=35.81  Aligned_cols=41  Identities=20%  Similarity=0.317  Sum_probs=35.8

Q ss_pred             CcccceEEEeecceeeeccCCC--eeeEeecccceecccCCCC
Q psy16786        143 KRMTGSLEAHVNGFRYTSVRGD--KVDILYNNIKHAFFQPCDG  183 (211)
Q Consensus       143 kr~~G~LE~H~NG~Ry~s~r~~--~vDilf~NIKHafFQp~~~  183 (211)
                      |+..|+|.+++.++-|+...++  .|++.|++|+....=|...
T Consensus        18 KK~~GtL~l~~d~l~W~p~~~~~~~v~~~~~~I~~~q~Spe~s   60 (108)
T d2rnrb1          18 KKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK   60 (108)
T ss_dssp             SSCEEEEEECSSEEEEEESSCSSCSEEEETTTEEEEEECCTTC
T ss_pred             ecCCcEEEEEcCeEEEEcCCCCCceEEEEhhhhhceecCCCCc
Confidence            7899999999999999976433  5999999999999999764