Psyllid ID: psy1678

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MQDQIHKKIKNGSIIMGDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI
Secondary Structure (PSIPRED)
ccHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccHHHHcccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHHcccccEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHcccccccccccHHHHHHHHHHHcccccccccccccEEEccccccHHHHHHHHHHHHHHHHcHcHcccHHHHHHHHHHHHHHHHHHcccHHHHccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHEcccHHcHHHHHHHHHHHEEEEEccccccccccHHHHHHHHHHHHHcccEEEEc
Coil and Loop (DISEMBL)
MQDQIHKKIkngsiimgdvnEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMgsnimgdvNEFKDFAKAMVDYVGNYLenirdrrvlptvepgylrplipetapdtpdtWQEVMSDIERvimpgvthwhspkfhayfptansypAIVADILSDSIACigftwiaspactELEVVMLDWLGKmldlpkeflacsggkgggviqGTASEATLVALLGAKAKTMQRVkeahpdwkdsdiiANLVGYCSDQAHSSVERAGLLggvtirglpaddsyKLRGDALEAAIEEDlkkgkipfyi
Flexible Loop (DISEMBL)
mqdqihkkikngsiimgdVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYlenirdrrvlptvepgylrplipetapdtpdTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKeahpdwkdsdIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAieedlkkgkipfyi
Low Complexity Region (SEG)
MQDQIHKKIKNGSIIMGDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI
Disordered region (IsUnstruct)
**********NGSIIMGDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDAL*****************
Disordered Region (DISOPRED)
***************MGDVNEFKDFAKAMVDYVGNYLENI********************VNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPL*********DTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQ************DIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI
Disordered Region (DISEMBL)
MQDQIHKKIKNGSIIMGDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK*********PDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI
Disordered Region (DISPRO)
MQDQIHKKIKNGSIIMGDVNEFKDFAKAMVDYVGNYLENIRDR*********M*SNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQDQIHKKIKNGSIIMGDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	297	2.2.26 [Sep-21-2011]
O96567	510	Aromatic-L-amino-acid dec	N/A	N/A	0.784	0.456	0.764	1e-102
P05031	510	Aromatic-L-amino-acid dec	yes	N/A	0.784	0.456	0.760	1e-102
P48861	508	Aromatic-L-amino-acid dec	N/A	N/A	0.791	0.462	0.719	3e-98
P22781	480	Aromatic-L-amino-acid dec	yes	N/A	0.801	0.495	0.605	1e-85
P20711	480	Aromatic-L-amino-acid dec	no	N/A	0.801	0.495	0.592	2e-85
P14173	480	Aromatic-L-amino-acid dec	yes	N/A	0.801	0.495	0.592	1e-83
Q05733	847	Histidine decarboxylase O	no	N/A	0.801	0.280	0.543	9e-81
P27718	487	Aromatic-L-amino-acid dec	yes	N/A	0.801	0.488	0.592	2e-80
P80041	486	Aromatic-L-amino-acid dec	yes	N/A	0.801	0.489	0.584	4e-80
O88533	480	Aromatic-L-amino-acid dec	yes	N/A	0.801	0.495	0.588	8e-80

>sp|O96567|DDC_DROSI Aromatic-L-amino-acid decarboxylase OS=Drosophila simulans GN=Ddc PE=3 SV=2

 Score =  373 bits (957), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 179/234 (76%), Positives = 207/234 (88%), Gaps = 1/234 (0%)

Query: 63  EFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI 122
           EFKDFAK MVD++  YLENIRDRRVLP V+PGYL+PLIP+ AP+ P+ WQ+VM DIERVI
Sbjct: 40  EFKDFAKTMVDFIAEYLENIRDRRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVI 99

Query: 123 MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 182
           MPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEVVM+DWLGK
Sbjct: 100 MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGK 159

Query: 183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242
           ML+LP EFL CSGGKGGGVIQGTASE+TLVALLGAKAK ++ VKE HP+W +  I+  LV
Sbjct: 160 MLELPAEFLVCSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV 219

Query: 243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296
           GYCSDQAHSSVERAGLLGGV +R + +++ +++RG ALE AIE+DL +G IPFY
Sbjct: 220 GYCSDQAHSSVERAGLLGGVKLRSVQSEN-HRMRGAALEKAIEQDLAEGLIPFY 272

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in individual life span.
Drosophila simulans (taxid: 7240)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 8

>sp|P05031|DDC_DROME Aromatic-L-amino-acid decarboxylase OS=Drosophila melanogaster GN=Ddc PE=1 SV=4

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/234 (76%), Positives = 208/234 (88%), Gaps = 1/234 (0%)

Query: 63  EFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI 122
           EFKDFAK MVD++  YLENIR+RRVLP V+PGYL+PLIP+ AP+ P+ WQ+VM DIERVI
Sbjct: 40  EFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVI 99

Query: 123 MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 182
           MPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEVVM+DWLGK
Sbjct: 100 MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGK 159

Query: 183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242
           ML+LP EFLACSGGKGGGVIQGTASE+TLVALLGAKAK ++ VKE HP+W +  I+  LV
Sbjct: 160 MLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV 219

Query: 243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296
           GYCSDQAHSSVERAGLLGGV +R + +++ +++RG ALE AIE+D+ +G IPFY
Sbjct: 220 GYCSDQAHSSVERAGLLGGVKLRSVQSEN-HRMRGAALEKAIEQDVAEGLIPFY 272

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in life span.

Drosophila melanogaster (taxid: 7227)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|P48861|DDC_MANSE Aromatic-L-amino-acid decarboxylase OS=Manduca sexta GN=Ddc PE=2 SV=1

 Score =  358 bits (919), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 169/235 (71%), Positives = 199/235 (84%)

Query: 63  EFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI 122
           +FKDFAKAM DY+  YLENIRDR+V+P+V+PGYLRPL+PE AP   + W  VM+DIERV+
Sbjct: 5   DFKDFAKAMTDYITEYLENIRDRQVVPSVKPGYLRPLVPEQAPQQAEPWTAVMADIERVV 64

Query: 123 MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 182
           M GVTHW SP+FHAYFPTANSYP+IVAD+LS +IACIGFTWIASPACTELEVVMLDWLG+
Sbjct: 65  MSGVTHWQSPRFHAYFPTANSYPSIVADMLSGAIACIGFTWIASPACTELEVVMLDWLGQ 124

Query: 183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242
           ML LP +FLA SGG+GGGVIQGTASEAT VALLGAK++ M RVKE HP+W ++DI+  LV
Sbjct: 125 MLGLPDQFLARSGGEGGGVIQGTASEATFVALLGAKSRMMHRVKEQHPEWTETDILGKLV 184

Query: 243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
           GYC+ QAHSSVERAGLLGGV +R L  D   +LRGD L  AI+ED++ G IPFY+
Sbjct: 185 GYCNQQAHSSVERAGLLGGVKLRSLKPDSKRRLRGDTLREAIDEDIRNGLIPFYV 239

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Manduca sexta (taxid: 7130)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|P22781|DDC_CAVPO Aromatic-L-amino-acid decarboxylase OS=Cavia porcellus GN=DDC PE=2 SV=1

 Score =  316 bits (809), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 144/238 (60%), Positives = 185/238 (77%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           + +EF+   K MVDYV NYLE I  R V P VEPGYLRPLIP +AP+ P+T+++++ DIE
Sbjct: 2   NASEFRRRGKEMVDYVANYLEGIESRLVYPDVEPGYLRPLIPSSAPEEPETYEDIIGDIE 61

Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           R+IMPGVTHW+SP F AYFPTANSYP+++AD+L  +I+CIGF+W ASPACTELE VMLDW
Sbjct: 62  RIIMPGVTHWNSPYFFAYFPTANSYPSMLADMLCGAISCIGFSWAASPACTELETVMLDW 121

Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
           LGKML LP  FLA + G GGGVIQG+ASEATLVALL A+ K ++R++ A P+   + I+ 
Sbjct: 122 LGKMLRLPDAFLAGNAGMGGGVIQGSASEATLVALLAARTKVIRRLQAASPELTQAAIME 181

Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
            LV Y SDQAHSSVERAGL+GGV ++ +P+D ++ +R  AL  A+E D   G IPF++
Sbjct: 182 KLVAYASDQAHSSVERAGLIGGVRMKLIPSDSNFAMRASALREALERDKAAGLIPFFV 239

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Cavia porcellus (taxid: 10141)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|P20711|DDC_HUMAN Aromatic-L-amino-acid decarboxylase OS=Homo sapiens GN=DDC PE=1 SV=2

 Score =  315 bits (808), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 141/238 (59%), Positives = 185/238 (77%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           + +EF+   K MVDY+ NY+E I  R+V P VEPGYLRPLIP  AP  PDT++++++D+E
Sbjct: 2   NASEFRRRGKEMVDYMANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVE 61

Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct: 62  KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121

Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
           LGKML+LPK FL    G+GGGVIQG+ASEATLVALL A+ K + R++ A P+   + I+ 
Sbjct: 122 LGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIME 181

Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
            LV Y SDQAHSSVERAGL+GGV ++ +P+D ++ +R  AL+ A+E D   G IPF++
Sbjct: 182 KLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFM 239

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|P14173|DDC_RAT Aromatic-L-amino-acid decarboxylase OS=Rattus norvegicus GN=Ddc PE=1 SV=1

 Score =  310 bits (793), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 141/238 (59%), Positives = 183/238 (76%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           D  EF+   K MVDY+ +YL+ I  R V P VEPGYLR LIP TAP  P+T+++++ DIE
Sbjct: 2   DSREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRALIPTTAPQEPETYEDIIRDIE 61

Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct: 62  KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121

Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
           LGKML+LP+ FLA   G+GGGVIQG+ASEATLVALL A+ K +++++ A P+   + ++ 
Sbjct: 122 LGKMLELPEAFLAGRAGEGGGVIQGSASEATLVALLAARTKMIRQLQAASPELTQAALME 181

Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
            LV Y SDQAHSSVERAGL+GGV I+ +P+D +Y +R  AL  A+E D   G IPF++
Sbjct: 182 KLVAYTSDQAHSSVERAGLIGGVKIKAIPSDGNYSMRAAALREALERDKAAGLIPFFV 239

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|Q05733|DCHS_DROME Histidine decarboxylase OS=Drosophila melanogaster GN=Hdc PE=2 SV=2

 Score =  300 bits (768), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 130/239 (54%), Positives = 179/239 (74%), Gaps = 1/239 (0%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           D  E++   K MVDY+ +YLENIR+RRV P V PGY+R L+PE+AP   + W ++ SD+E
Sbjct: 2   DFKEYRQRGKEMVDYIADYLENIRERRVFPDVSPGYMRQLLPESAPIEGEPWPKIFSDVE 61

Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           R++MPG+THW SP  HAYFP  NS P+++ D+L+D+I C+GFTW +SPACTELE+++++W
Sbjct: 62  RIVMPGITHWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTWASSPACTELEIIVMNW 121

Query: 180 LGKMLDLPKEFLACSG-GKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDII 238
           LGKM+ LP  FL  S   +GGGV+Q TASEATLV LL  + + +QR  E HP ++D++I 
Sbjct: 122 LGKMIGLPDAFLHLSSQSQGGGVLQTTASEATLVCLLAGRTRAIQRFHERHPGYQDAEIN 181

Query: 239 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
           A LV YCSDQAHSSVE+A L+G V +R + ADD   +RG  L  AIE+D+K+G +PF++
Sbjct: 182 ARLVAYCSDQAHSSVEKAALIGLVRMRYIEADDDLAMRGKLLREAIEDDIKQGLVPFWV 240

Required in photoreceptor transmitter synthesis.

Drosophila melanogaster (taxid: 7227)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P27718|DDC_BOVIN Aromatic-L-amino-acid decarboxylase OS=Bos taurus GN=DDC PE=2 SV=2

 Score =  298 bits (764), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 141/238 (59%), Positives = 182/238 (76%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           + +EF+   K MVDYV +YLE I  R+V P V+PGYLRPLIP TAP  P+T++ ++ DIE
Sbjct: 2   NASEFRRRGKEMVDYVADYLEGIEGRQVFPDVDPGYLRPLIPTTAPQEPETFEAIIEDIE 61

Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct: 62  KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121

Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
           LGKML LP+ FLA   G+GGGVIQGTASEATLVALL A+ K  + ++ A P+   + I+ 
Sbjct: 122 LGKMLQLPEAFLAGEAGEGGGVIQGTASEATLVALLAARTKVTRHLQAASPELMQAAIME 181

Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
            LV Y SDQAHSSVE+AGL+GGV ++ +P+D  + +R  AL+ A+E D   G IPF++
Sbjct: 182 KLVAYASDQAHSSVEKAGLIGGVRLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV 239

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|P80041|DDC_PIG Aromatic-L-amino-acid decarboxylase OS=Sus scrofa GN=DDC PE=1 SV=2

 Score =  298 bits (762), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 139/238 (58%), Positives = 183/238 (76%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           + ++F+   K MVDY+ +YLE I  R+V P V+PGYLRPLIP TAP  PDT+++++ D+E
Sbjct: 2   NASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVE 61

Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct: 62  KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121

Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
           LGKML LP+ FLA   G+GGGVIQG+ASEATLVALL A+ K ++R++ A P      ++ 
Sbjct: 122 LGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLE 181

Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
            LV Y SDQAHSSVERAGL+GGV ++ +P+D  + +R  AL+ A+E D   G IPF++
Sbjct: 182 KLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV 239

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Sus scrofa (taxid: 9823)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|O88533|DDC_MOUSE Aromatic-L-amino-acid decarboxylase OS=Mus musculus GN=Ddc PE=2 SV=1

 Score =  296 bits (759), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 140/238 (58%), Positives = 185/238 (77%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           D  EF+   K MVDY+ +YL+ I  R V P VEPGYLRPLIP TAP  P+T+++++ DIE
Sbjct: 2   DSREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRPLIPATAPQEPETYEDIIKDIE 61

Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct: 62  KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121

Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
           LGKML+LP+ FLA   G+GGGVIQG+ASEATLVALL A+ K +++++ A P++  + I+ 
Sbjct: 122 LGKMLELPEAFLAGRAGEGGGVIQGSASEATLVALLAARTKVIRQLQAASPEFTQAAIME 181

Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
            LV Y SDQAHSSVERAGL+GG+ ++ +P+D ++ +R  AL  A+E D   G IPF++
Sbjct: 182 KLVAYTSDQAHSSVERAGLIGGIKLKAVPSDGNFSMRASALREALERDKAAGLIPFFV 239

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
118791602	519	AGAP009091-PA [Anopheles gambiae str. PE	0.838	0.479	0.772	1e-107
195050044	516	GH13483 [Drosophila grimshawi] gi|193899	0.787	0.453	0.811	1e-106
58393120	488	AGAP009091-PB [Anopheles gambiae str. PE	0.791	0.481	0.817	1e-106
195115240	516	GI17235 [Drosophila mojavensis] gi|19391	0.787	0.453	0.794	1e-105
50347093	487	dopa decarboxylase [Armigeres subalbatus	0.787	0.480	0.756	1e-104
195398049	504	Dopa-decarboxylase [Drosophila virilis]	0.787	0.464	0.790	1e-104
296040327	476	dopa decarboxylase [Papilio machaon]	0.801	0.5	0.735	1e-104
195164580	515	GL21129 [Drosophila persimilis] gi|19846	0.784	0.452	0.786	1e-103
194759344	510	GF15210 [Drosophila ananassae] gi|190615	0.784	0.456	0.782	1e-103
237874146	476	dopa decarboxylase [Papilio xuthus]	0.801	0.5	0.739	1e-103

>gi|118791602|ref|XP_319841.3| AGAP009091-PA [Anopheles gambiae str. PEST] gi|116117681|gb|EAA43376.3| AGAP009091-PA [Anopheles gambiae str. PEST]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/251 (77%), Positives = 219/251 (87%), Gaps = 2/251 (0%)

Query: 47  LQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPD 106
              F Q+ + +     EFKDFAK MVDY+ NYLENIRDRRVLPTV+PGYLRPLIP+ AP 
Sbjct: 32  FMEFEQLATEMQAP--EFKDFAKEMVDYISNYLENIRDRRVLPTVQPGYLRPLIPDEAPQ 89

Query: 107 TPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIAS 166
            P+ W+EVM+D+ERVIMPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIAS
Sbjct: 90  QPEKWEEVMADVERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIAS 149

Query: 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK 226
           PACTELEVVMLDWLGKMLDLPKEFLACSGG+GGGVIQGTASEATLVALLGAKAK M+RVK
Sbjct: 150 PACTELEVVMLDWLGKMLDLPKEFLACSGGQGGGVIQGTASEATLVALLGAKAKAMKRVK 209

Query: 227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE 286
           E HPDW D+ I++ LVGY S+Q+HSSVERAGLLGGV +RGL AD++ KLRG+ LE AI+E
Sbjct: 210 EEHPDWDDNTIVSKLVGYTSNQSHSSVERAGLLGGVKLRGLKADENLKLRGETLEQAIKE 269

Query: 287 DLKKGKIPFYI 297
           DL  G IPFY+
Sbjct: 270 DLDAGLIPFYV 280

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195050044|ref|XP_001992815.1| GH13483 [Drosophila grimshawi] gi|193899874|gb|EDV98740.1| GH13483 [Drosophila grimshawi]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/234 (81%), Positives = 208/234 (88%)

Query: 63  EFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI 122
           EFKDFAK MVDY+ NYLENIR+RRVLP V+PGYL+PLIPETAP+ P+ WQ+VM DIERVI
Sbjct: 40  EFKDFAKTMVDYIANYLENIRERRVLPEVKPGYLQPLIPETAPEKPEDWQDVMKDIERVI 99

Query: 123 MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 182
           MPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEVVMLDWLGK
Sbjct: 100 MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMLDWLGK 159

Query: 183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242
           MLDLP EFLACSGGKGGGVIQGTASE+TLVALLGAKAK MQ VK  HPDW +  II  LV
Sbjct: 160 MLDLPSEFLACSGGKGGGVIQGTASESTLVALLGAKAKKMQEVKAEHPDWDEQTIIGKLV 219

Query: 243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296
           GY S QAHSSVERAGLLGG+ +R +PAD+  +LRGDALEAAI++DL  G IPFY
Sbjct: 220 GYASAQAHSSVERAGLLGGIKLRSVPADEHNRLRGDALEAAIKQDLADGLIPFY 273

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58393120|ref|XP_319840.2| AGAP009091-PB [Anopheles gambiae str. PEST] gi|55235425|gb|EAA43375.2| AGAP009091-PB [Anopheles gambiae str. PEST]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/235 (81%), Positives = 214/235 (91%)

Query: 63  EFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI 122
           EFKDFAK MVDY+ NYLENIRDRRVLPTV+PGYLRPLIP+ AP  P+ W+EVM+D+ERVI
Sbjct: 15  EFKDFAKEMVDYISNYLENIRDRRVLPTVQPGYLRPLIPDEAPQQPEKWEEVMADVERVI 74

Query: 123 MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 182
           MPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEVVMLDWLGK
Sbjct: 75  MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMLDWLGK 134

Query: 183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242
           MLDLPKEFLACSGG+GGGVIQGTASEATLVALLGAKAK M+RVKE HPDW D+ I++ LV
Sbjct: 135 MLDLPKEFLACSGGQGGGVIQGTASEATLVALLGAKAKAMKRVKEEHPDWDDNTIVSKLV 194

Query: 243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
           GY S+Q+HSSVERAGLLGGV +RGL AD++ KLRG+ LE AI+EDL  G IPFY+
Sbjct: 195 GYTSNQSHSSVERAGLLGGVKLRGLKADENLKLRGETLEQAIKEDLDAGLIPFYV 249

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195115240|ref|XP_002002172.1| GI17235 [Drosophila mojavensis] gi|193912747|gb|EDW11614.1| GI17235 [Drosophila mojavensis]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/234 (79%), Positives = 209/234 (89%)

Query: 63  EFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI 122
           EFKDFAK+MVDY+ +YLEN+RDRRVLP V+PGYL+PLIP+ AP+ P+ WQ+VM DIERVI
Sbjct: 40  EFKDFAKSMVDYIADYLENVRDRRVLPEVKPGYLQPLIPDAAPEKPENWQDVMKDIERVI 99

Query: 123 MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 182
           MPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEVVMLDWLGK
Sbjct: 100 MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMLDWLGK 159

Query: 183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242
           MLDLP EFLACSGGKGGGVIQGTASE+TLVALLGAKAK +Q+VK+ HP+W +  II  LV
Sbjct: 160 MLDLPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKIQQVKKEHPEWDEHTIIGKLV 219

Query: 243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296
           GY S QAHSSVERAGLLGGV +R +PAD+  +LRGDALE AI+EDL  G IPFY
Sbjct: 220 GYSSAQAHSSVERAGLLGGVKLRSVPADEHNRLRGDALEQAIKEDLAAGLIPFY 273

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|50347093|gb|AAT75222.1| dopa decarboxylase [Armigeres subalbatus]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/234 (75%), Positives = 205/234 (87%)

Query: 63  EFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI 122
           +FK+FAK MVDY+ NYLENIRDRRVLP V+PGYL+PLIP  AP+ P++W+ VM+DIERVI
Sbjct: 15  QFKEFAKEMVDYIANYLENIRDRRVLPEVQPGYLKPLIPSEAPEKPESWEAVMADIERVI 74

Query: 123 MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 182
           MPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEV ML+WLGK
Sbjct: 75  MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVEMLNWLGK 134

Query: 183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242
           ML LP+EFLACSGG+ GGVIQGTASEATLVALLGAKAK ++R +E HP+W +  II+ LV
Sbjct: 135 MLGLPEEFLACSGGQAGGVIQGTASEATLVALLGAKAKAIKRAQEEHPEWDEMYIISRLV 194

Query: 243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296
           GY S+Q+HSSVERAGLLGGV +R L AD + +LRG+ LE AI+EDL  G IPFY
Sbjct: 195 GYTSNQSHSSVERAGLLGGVKLRSLKADSNLQLRGETLEQAIKEDLANGLIPFY 248

Source: Armigeres subalbatus

Species: Armigeres subalbatus

Genus: Armigeres

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195398049|ref|XP_002057637.1| Dopa-decarboxylase [Drosophila virilis] gi|194141291|gb|EDW57710.1| Dopa-decarboxylase [Drosophila virilis]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/234 (79%), Positives = 208/234 (88%)

Query: 63  EFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI 122
           EFKDFAK+MVDY+ +YLENIRDRRVLP V+PGYL+PLIP+ AP+ P+ WQ+VM DIERVI
Sbjct: 28  EFKDFAKSMVDYIADYLENIRDRRVLPEVKPGYLQPLIPDAAPEKPENWQDVMKDIERVI 87

Query: 123 MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 182
           MPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEVVMLDWLGK
Sbjct: 88  MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMLDWLGK 147

Query: 183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242
           M+DLP EFLACSGGKGGGVIQGTASE+TLVALLGAKAK +Q VK  HP+W D  II  LV
Sbjct: 148 MIDLPSEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLQEVKATHPEWDDHTIIGKLV 207

Query: 243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296
           GY S Q+HSSVERAGLLGG+ +R +PAD++ +LRGDALE AIE+DL  G IPFY
Sbjct: 208 GYASAQSHSSVERAGLLGGIKLRSVPADENNRLRGDALEKAIEKDLADGLIPFY 261

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|296040327|dbj|BAJ07588.1| dopa decarboxylase [Papilio machaon]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 175/238 (73%), Positives = 208/238 (87%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           +  +FKDFAKAM DY+  YLENIRDR V+P+V+PGYLRPL+PE AP+  + W  VM+DIE
Sbjct: 2   EAGDFKDFAKAMTDYIAEYLENIRDRPVVPSVKPGYLRPLVPEQAPEKAEPWTAVMADIE 61

Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           RV+M GVTHWHSP+FHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEVVMLDW
Sbjct: 62  RVVMSGVTHWHSPRFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMLDW 121

Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
           LG+ML LP+ FLA SGG+ GGVIQGTASEATLVALLGAK++TMQRVKE HP+W D++I++
Sbjct: 122 LGQMLGLPECFLARSGGEAGGVIQGTASEATLVALLGAKSRTMQRVKEQHPEWTDTEILS 181

Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
            LVGYC+ QAHSSVERAGLLGGV +R L  D+ ++LRGD L+ AI+ED+KKG IPFY+
Sbjct: 182 KLVGYCNKQAHSSVERAGLLGGVKMRSLKPDNKHRLRGDILQEAIDEDIKKGLIPFYV 239

Source: Papilio machaon

Species: Papilio machaon

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195164580|ref|XP_002023124.1| GL21129 [Drosophila persimilis] gi|198461929|ref|XP_001352275.2| Ddc [Drosophila pseudoobscura pseudoobscura] gi|194105209|gb|EDW27252.1| GL21129 [Drosophila persimilis] gi|198142413|gb|EAL29377.2| Ddc [Drosophila pseudoobscura pseudoobscura]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/234 (78%), Positives = 209/234 (89%), Gaps = 1/234 (0%)

Query: 63  EFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI 122
           EFKDFAK+MVDY+  YLENIRDRRVLP V+PGYL+PLIP+TAP+ P+ WQ+VM DIERVI
Sbjct: 45  EFKDFAKSMVDYIAEYLENIRDRRVLPEVKPGYLKPLIPDTAPEKPENWQDVMQDIERVI 104

Query: 123 MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 182
           MPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEV M+DWLGK
Sbjct: 105 MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVAMMDWLGK 164

Query: 183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242
           M+DLP EFLACSGGKGGGVIQGTASE+TLVALLGAKAK ++ V+  HPDW +  II  LV
Sbjct: 165 MIDLPSEFLACSGGKGGGVIQGTASESTLVALLGAKAKKVKEVQAQHPDWDEHTIIGKLV 224

Query: 243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296
           GYCSDQAHSSVERAGLLGGV +R +P++ S +LRG+ALE AIE+DL+ G IPFY
Sbjct: 225 GYCSDQAHSSVERAGLLGGVKLRSVPSEKS-RLRGEALEKAIEQDLEDGLIPFY 277

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194759344|ref|XP_001961909.1| GF15210 [Drosophila ananassae] gi|190615606|gb|EDV31130.1| GF15210 [Drosophila ananassae]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/234 (78%), Positives = 209/234 (89%), Gaps = 1/234 (0%)

Query: 63  EFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI 122
           EFKDFAK MVD++  YLENIR+RRVLP V+PGYL+PLIP+ AP+ P+ WQ+VM DIERVI
Sbjct: 40  EFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPENWQDVMQDIERVI 99

Query: 123 MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 182
           MPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEVVM+DWLGK
Sbjct: 100 MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGK 159

Query: 183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242
           MLDLPKEFLACSGGKGGGVIQGTASE+TLVALLGAKAK +Q VK  HP+W +  II  LV
Sbjct: 160 MLDLPKEFLACSGGKGGGVIQGTASESTLVALLGAKAKKVQEVKAQHPEWDEHTIIGKLV 219

Query: 243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296
           GYCSDQAHSSVERAGLLGGV +R +P+++ +++RGDALE AI++DL  G IPFY
Sbjct: 220 GYCSDQAHSSVERAGLLGGVKLRSVPSEN-HRMRGDALEKAIQQDLADGLIPFY 272

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|237874146|dbj|BAE43825.2| dopa decarboxylase [Papilio xuthus]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/238 (73%), Positives = 206/238 (86%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           +  +FKDFAKAM DY+  YLENIRDR V+P V+PGYLRPL+PE APD  + W  VM+DIE
Sbjct: 2   EAGDFKDFAKAMTDYIAEYLENIRDRPVVPLVKPGYLRPLVPEQAPDKAEPWTAVMADIE 61

Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           RV+M GVTHWHSP+FHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEVVMLDW
Sbjct: 62  RVVMSGVTHWHSPRFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMLDW 121

Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
           LG+ML LP+ FLA SGG+ GGVIQGTASEATLVALLGAK++TMQRVKE HP+W D++I++
Sbjct: 122 LGQMLGLPECFLARSGGEAGGVIQGTASEATLVALLGAKSRTMQRVKEQHPEWTDTEILS 181

Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
            LVGYC+ QAHSSVERAGLLGGV +R L  D  ++LRGD L+ AI+ED+KKG IPFY+
Sbjct: 182 KLVGYCNKQAHSSVERAGLLGGVKMRSLKPDGKHRLRGDILQEAIDEDIKKGLIPFYV 239

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
FB|FBgn0000422	510	Ddc "Dopa decarboxylase" [Dros	0.784	0.456	0.760	4.5e-107
ZFIN|ZDB-GENE-040426-2656	480	ddc "dopa decarboxylase" [Dani	0.797	0.493	0.628	5.2e-81
UNIPROTKB|E7ER62	338	DDC "Aromatic-L-amino-acid dec	0.801	0.704	0.592	1e-77
UNIPROTKB|P20711	480	DDC "Aromatic-L-amino-acid dec	0.801	0.495	0.592	1e-77
UNIPROTKB|F1PFV0	480	DDC "Uncharacterized protein"	0.801	0.495	0.605	1.3e-77
MGI|MGI:94876	480	Ddc "dopa decarboxylase" [Mus	0.801	0.495	0.588	1.6e-77
UNIPROTKB|P80041	486	DDC "Aromatic-L-amino-acid dec	0.801	0.489	0.584	2.7e-77
UNIPROTKB|F6R993	380	DDC "Aromatic-L-amino-acid dec	0.801	0.626	0.592	4.3e-77
UNIPROTKB|P27718	487	DDC "Aromatic-L-amino-acid dec	0.801	0.488	0.592	4.3e-77
RGD|2494	480	Ddc "dopa decarboxylase (aroma	0.801	0.495	0.592	1.5e-76

FB|FBgn0000422 Ddc "Dopa decarboxylase" [Drosophila melanogaster (taxid:7227)]

 Score = 978 (349.3 bits), Expect = 4.5e-107, Sum P(2) = 4.5e-107
 Identities = 178/234 (76%), Positives = 208/234 (88%)

Query:    63 EFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI 122
             EFKDFAK MVD++  YLENIR+RRVLP V+PGYL+PLIP+ AP+ P+ WQ+VM DIERVI
Sbjct:    40 EFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVI 99

Query:   123 MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 182
             MPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEVVM+DWLGK
Sbjct:   100 MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGK 159

Query:   183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242
             ML+LP EFLACSGGKGGGVIQGTASE+TLVALLGAKAK ++ VKE HP+W +  I+  LV
Sbjct:   160 MLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV 219

Query:   243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296
             GYCSDQAHSSVERAGLLGGV +R + +++ +++RG ALE AIE+D+ +G IPFY
Sbjct:   220 GYCSDQAHSSVERAGLLGGVKLRSVQSEN-HRMRGAALEKAIEQDVAEGLIPFY 272

GO:0006585 "dopamine biosynthetic process from tyrosine" evidence=IMP

GO:0006587 "serotonin biosynthetic process from tryptophan" evidence=IMP

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=NAS;IMP;TAS

GO:0007611 "learning or memory" evidence=NAS

GO:0006584 "catecholamine metabolic process" evidence=NAS

GO:0008062 "eclosion rhythm" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS

GO:0048066 "developmental pigmentation" evidence=TAS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0009611 "response to wounding" evidence=IEP

GO:0040040 "thermosensory behavior" evidence=IMP

GO:0043052 "thermotaxis" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IDA

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IGI;IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0048085 "adult chitin-containing cuticle pigmentation" evidence=IMP

GO:0007616 "long-term memory" evidence=IGI

ZFIN|ZDB-GENE-040426-2656 ddc "dopa decarboxylase" [Danio rerio (taxid:7955)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 149/237 (62%), Positives = 189/237 (79%)

Query:    60 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
             D  EF+   + MVDYV +Y+ENI  R+V P VEPGYLR LIPE AP+ P+++++V+ DIE
Sbjct:     2 DAAEFRRRGREMVDYVADYIENIEKRQVYPDVEPGYLRSLIPEEAPEEPESYEDVVKDIE 61

Query:   120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
             RVIMPGVTHWHSP F+AYFPTA+SYPA++ADIL  +I CIGF+W ASPACTELE VMLDW
Sbjct:    62 RVIMPGVTHWHSPYFYAYFPTAHSYPAMLADILCGAIGCIGFSWAASPACTELETVMLDW 121

Query:   180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
             LGKML LP++FLA + GKGGGVIQ TASEATL+ LL A++K ++ ++  HPD  ++DII+
Sbjct:   122 LGKMLKLPEDFLAGTKGKGGGVIQSTASEATLITLLAARSKIVRLIQADHPDRSETDIIS 181

Query:   240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296
              LV Y SDQAHSSVERAGL+GGV ++ +P D  + +RGDALE  ++ED   G IPF+
Sbjct:   182 KLVAYSSDQAHSSVERAGLIGGVRMKKIPTDSKFSVRGDALERILKEDKAAGLIPFF 238

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|E7ER62 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 141/238 (59%), Positives = 185/238 (77%)

Query:    60 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
             + +EF+   K MVDY+ NY+E I  R+V P VEPGYLRPLIP  AP  PDT++++++D+E
Sbjct:     2 NASEFRRRGKEMVDYMANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVE 61

Query:   120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
             ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct:    62 KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121

Query:   180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
             LGKML+LPK FL    G+GGGVIQG+ASEATLVALL A+ K + R++ A P+   + I+ 
Sbjct:   122 LGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIME 181

Query:   240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
              LV Y SDQAHSSVERAGL+GGV ++ +P+D ++ +R  AL+ A+E D   G IPF++
Sbjct:   182 KLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFM 239

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|P20711 DDC "Aromatic-L-amino-acid decarboxylase" [Homo sapiens (taxid:9606)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 141/238 (59%), Positives = 185/238 (77%)

Query:    60 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
             + +EF+   K MVDY+ NY+E I  R+V P VEPGYLRPLIP  AP  PDT++++++D+E
Sbjct:     2 NASEFRRRGKEMVDYMANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVE 61

Query:   120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
             ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct:    62 KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121

Query:   180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
             LGKML+LPK FL    G+GGGVIQG+ASEATLVALL A+ K + R++ A P+   + I+ 
Sbjct:   122 LGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIME 181

Query:   240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
              LV Y SDQAHSSVERAGL+GGV ++ +P+D ++ +R  AL+ A+E D   G IPF++
Sbjct:   182 KLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFM 239

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0010259 "multicellular organismal aging" evidence=IEA

GO:0015842 "synaptic vesicle amine transport" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0033076 "isoquinoline alkaloid metabolic process" evidence=IEA

GO:0035690 "cellular response to drug" evidence=IEA

GO:0042427 "serotonin biosynthetic process" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0046684 "response to pyrethroid" evidence=IEA

GO:0052314 "phytoalexin metabolic process" evidence=IEA

GO:0071312 "cellular response to alkaloid" evidence=IEA

GO:0071363 "cellular response to growth factor stimulus" evidence=IEA

GO:0042416 "dopamine biosynthetic process" evidence=IEA

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=IDA;TAS

GO:0005829 "cytosol" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042423 "catecholamine biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046219 "indolalkylamine biosynthetic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1PFV0 DDC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 144/238 (60%), Positives = 183/238 (76%)

Query:    60 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
             D  EF+   K MVD+V +YLE I  R+V P VEPGYLRPLIP TAP+ PD +++++SD+E
Sbjct:     2 DSAEFRRRGKEMVDFVADYLEGIEGRQVYPDVEPGYLRPLIPTTAPEEPDMFEDIISDVE 61

Query:   120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
             ++IMPGVTHWHSP F AYFP+ANSYPA++ADIL  +I CIGF+W ASPACTELE VM+DW
Sbjct:    62 KIIMPGVTHWHSPFFFAYFPSANSYPALLADILCGAIGCIGFSWAASPACTELETVMMDW 121

Query:   180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
             LGKML LP+ FLA   G+GGGVIQG+ASEATLVALL A+ K  +R++ A P      I+ 
Sbjct:   122 LGKMLKLPEAFLAGQVGEGGGVIQGSASEATLVALLAARTKVTRRLQAASPGLTQGAIME 181

Query:   240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
              LV Y SDQAHSSVERAGL+GGV ++ +P+D  + +R  AL+ A+E D  +G IPF++
Sbjct:   182 KLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAEGLIPFFV 239

GO:0009636 "response to toxic substance" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

MGI|MGI:94876 Ddc "dopa decarboxylase" [Mus musculus (taxid:10090)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 140/238 (58%), Positives = 185/238 (77%)

Query:    60 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
             D  EF+   K MVDY+ +YL+ I  R V P VEPGYLRPLIP TAP  P+T+++++ DIE
Sbjct:     2 DSREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRPLIPATAPQEPETYEDIIKDIE 61

Query:   120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
             ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct:    62 KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121

Query:   180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
             LGKML+LP+ FLA   G+GGGVIQG+ASEATLVALL A+ K +++++ A P++  + I+ 
Sbjct:   122 LGKMLELPEAFLAGRAGEGGGVIQGSASEATLVALLAARTKVIRQLQAASPEFTQAAIME 181

Query:   240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
              LV Y SDQAHSSVERAGL+GG+ ++ +P+D ++ +R  AL  A+E D   G IPF++
Sbjct:   182 KLVAYTSDQAHSSVERAGLIGGIKLKAVPSDGNFSMRASALREALERDKAAGLIPFFV 239

GO:0003824 "catalytic activity" evidence=IEA

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0009636 "response to toxic substance" evidence=IDA

GO:0015842 "synaptic vesicle amine transport" evidence=ISO

GO:0016597 "amino acid binding" evidence=ISO

GO:0016829 "lyase activity" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030170 "pyridoxal phosphate binding" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0042416 "dopamine biosynthetic process" evidence=ISO

GO:0042423 "catecholamine biosynthetic process" evidence=IEA

GO:0042427 "serotonin biosynthetic process" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

UNIPROTKB|P80041 DDC "Aromatic-L-amino-acid decarboxylase" [Sus scrofa (taxid:9823)]

 Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
 Identities = 139/238 (58%), Positives = 183/238 (76%)

Query:    60 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
             + ++F+   K MVDY+ +YLE I  R+V P V+PGYLRPLIP TAP  PDT+++++ D+E
Sbjct:     2 NASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVE 61

Query:   120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
             ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct:    62 KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121

Query:   180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
             LGKML LP+ FLA   G+GGGVIQG+ASEATLVALL A+ K ++R++ A P      ++ 
Sbjct:   122 LGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLE 181

Query:   240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
              LV Y SDQAHSSVERAGL+GGV ++ +P+D  + +R  AL+ A+E D   G IPF++
Sbjct:   182 KLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV 239

GO:0042416 "dopamine biosynthetic process" evidence=IEA

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

UNIPROTKB|F6R993 DDC "Aromatic-L-amino-acid decarboxylase" [Bos taurus (taxid:9913)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 141/238 (59%), Positives = 182/238 (76%)

Query:    60 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
             + +EF+   K MVDYV +YLE I  R+V P V+PGYLRPLIP TAP  P+T++ ++ DIE
Sbjct:     2 NASEFRRRGKEMVDYVADYLEGIEGRQVFPDVDPGYLRPLIPTTAPQEPETFEAIIEDIE 61

Query:   120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
             ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct:    62 KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121

Query:   180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
             LGKML LP+ FLA   G+GGGVIQGTASEATLVALL A+ K  + ++ A P+   + I+ 
Sbjct:   122 LGKMLQLPEAFLAGEAGEGGGVIQGTASEATLVALLAARTKVTRHLQAASPELTQAAIME 181

Query:   240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
              LV Y SDQAHSSVE+AGL+GGV ++ +P+D  + +R  AL+ A+E D   G IPF++
Sbjct:   182 KLVAYASDQAHSSVEKAGLIGGVRLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV 239

GO:0009636 "response to toxic substance" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

UNIPROTKB|P27718 DDC "Aromatic-L-amino-acid decarboxylase" [Bos taurus (taxid:9913)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 141/238 (59%), Positives = 182/238 (76%)

Query:    60 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
             + +EF+   K MVDYV +YLE I  R+V P V+PGYLRPLIP TAP  P+T++ ++ DIE
Sbjct:     2 NASEFRRRGKEMVDYVADYLEGIEGRQVFPDVDPGYLRPLIPTTAPQEPETFEAIIEDIE 61

Query:   120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
             ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct:    62 KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121

Query:   180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
             LGKML LP+ FLA   G+GGGVIQGTASEATLVALL A+ K  + ++ A P+   + I+ 
Sbjct:   122 LGKMLQLPEAFLAGEAGEGGGVIQGTASEATLVALLAARTKVTRHLQAASPELMQAAIME 181

Query:   240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
              LV Y SDQAHSSVE+AGL+GGV ++ +P+D  + +R  AL+ A+E D   G IPF++
Sbjct:   182 KLVAYASDQAHSSVEKAGLIGGVRLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV 239

GO:0042416 "dopamine biosynthetic process" evidence=IEA

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

RGD|2494 Ddc "dopa decarboxylase (aromatic L-amino acid decarboxylase)" [Rattus norvegicus (taxid:10116)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 141/238 (59%), Positives = 183/238 (76%)

Query:    60 DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
             D  EF+   K MVDY+ +YL+ I  R V P VEPGYLR LIP TAP  P+T+++++ DIE
Sbjct:     2 DSREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRALIPTTAPQEPETYEDIIRDIE 61

Query:   120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
             ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct:    62 KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121

Query:   180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
             LGKML+LP+ FLA   G+GGGVIQG+ASEATLVALL A+ K +++++ A P+   + ++ 
Sbjct:   122 LGKMLELPEAFLAGRAGEGGGVIQGSASEATLVALLAARTKMIRQLQAASPELTQAALME 181

Query:   240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
              LV Y SDQAHSSVERAGL+GGV I+ +P+D +Y +R  AL  A+E D   G IPF++
Sbjct:   182 KLVAYTSDQAHSSVERAGLIGGVKIKAIPSDGNYSMRAAALREALERDKAAGLIPFFV 239

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0009636 "response to toxic substance" evidence=ISO

GO:0010259 "multicellular organismal aging" evidence=IEP

GO:0015842 "synaptic vesicle amine transport" evidence=IDA

GO:0016597 "amino acid binding" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0030170 "pyridoxal phosphate binding" evidence=IDA;TAS

GO:0030424 "axon" evidence=IDA

GO:0033076 "isoquinoline alkaloid metabolic process" evidence=IEP

GO:0035690 "cellular response to drug" evidence=IEP

GO:0042416 "dopamine biosynthetic process" evidence=IEA;IDA

GO:0042417 "dopamine metabolic process" evidence=TAS

GO:0042423 "catecholamine biosynthetic process" evidence=TAS

GO:0042427 "serotonin biosynthetic process" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0046684 "response to pyrethroid" evidence=IEP

GO:0052314 "phytoalexin metabolic process" evidence=IEP

GO:0071312 "cellular response to alkaloid" evidence=IEP

GO:0071363 "cellular response to growth factor stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O88533	DDC_MOUSE	4, ., 1, ., 1, ., 2, 8	0.5882	0.8013	0.4958	yes	N/A
P14173	DDC_RAT	4, ., 1, ., 1, ., 2, 8	0.5924	0.8013	0.4958	yes	N/A
P80041	DDC_PIG	4, ., 1, ., 1, ., 2, 8	0.5840	0.8013	0.4897	yes	N/A
P05031	DDC_DROME	4, ., 1, ., 1, ., 2, 8	0.7606	0.7845	0.4568	yes	N/A
P22781	DDC_CAVPO	4, ., 1, ., 1, ., 2, 8	0.6050	0.8013	0.4958	yes	N/A
P27718	DDC_BOVIN	4, ., 1, ., 1, ., 2, 8	0.5924	0.8013	0.4887	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.1	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	297
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	5e-96
PLN02880	490	PLN02880, PLN02880, tyrosine decarboxylase	3e-76
PLN02590	539	PLN02590, PLN02590, probable tyrosine decarboxylas	5e-65
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	2e-46
COG0076	460	COG0076, GadB, Glutamate decarboxylase and related	2e-20
PRK13520	371	PRK13520, PRK13520, L-tyrosine decarboxylase; Prov	0.004

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score =  287 bits (736), Expect = 5e-96
 Identities = 114/205 (55%), Positives = 148/205 (72%), Gaps = 7/205 (3%)

Query: 93  PGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADIL 152
           PGYLRPL+PE AP  P+   +++ DI + IMPGVT WHSP FHAYFP  NSYP+++ D+L
Sbjct: 1   PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60

Query: 153 SDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLV 212
           SD+I C GFTW +SPACTELE V++DWL KML LPKEFL      GGGV+QG +SE+ L+
Sbjct: 61  SDAINCNGFTWESSPACTELENVVMDWLAKMLGLPKEFLGSGE--GGGVLQGGSSESNLL 118

Query: 213 ALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS 272
           ALL A+ K ++R+K A         +  LV Y SDQAHSS+E+A L+ GV +R +P D++
Sbjct: 119 ALLAARTKWIRRMKAAGKPS-----LGKLVAYTSDQAHSSIEKAALIAGVELREIPTDEN 173

Query: 273 YKLRGDALEAAIEEDLKKGKIPFYI 297
            K+RG  LE AIEED + G IPF++
Sbjct: 174 GKMRGMDLEKAIEEDKENGLIPFFV 198

Length = 373

>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase

 Score =  240 bits (613), Expect = 3e-76
 Identities = 103/243 (42%), Positives = 157/243 (64%), Gaps = 15/243 (6%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           D  + ++    MVD++ +Y ++I +  VL  V+PGYLR L+P++AP+ P+T  +V+ D++
Sbjct: 11  DAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQ 70

Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
             I+PGVTHW SP + AY+P+ +S    + ++LS  +  +GF+WI SPA TELE+++LDW
Sbjct: 71  AKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDW 130

Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
           L K+L+LP++FL  S G GGGVIQGTASEA LV LL A+ + +++V +        + + 
Sbjct: 131 LAKLLNLPEQFL--STGNGGGVIQGTASEAVLVVLLAARDRVLRKVGK--------NALE 180

Query: 240 NLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDS--YKLRGDALEAAIEEDLKKGKIP 294
            LV Y SDQ HS++++A  + G+     R L  D S  Y L  + L  AI  DL  G IP
Sbjct: 181 KLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIP 240

Query: 295 FYI 297
           F++
Sbjct: 241 FFL 243

Length = 490

>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase

 Score =  212 bits (541), Expect = 5e-65
 Identities = 102/236 (43%), Positives = 154/236 (65%), Gaps = 19/236 (8%)

Query: 71  MVDYVGNYLENIRDRR----VLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGV 126
           MVD++ +Y +N++D      VL  V+PGYLR ++P++AP+ P++ +E++ D+ + IMPG+
Sbjct: 66  MVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGI 125

Query: 127 THWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDL 186
           THW SP + AY+ ++ S    + ++L+  ++ +GFTW+ SPA TELE+++LDWL K+L L
Sbjct: 126 THWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQL 185

Query: 187 PKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS 246
           P  FL  S G GGGVIQGT  EA LV +L A+ + +++V +         ++  LV Y S
Sbjct: 186 PDHFL--STGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKT--------LLPQLVVYGS 235

Query: 247 DQAHSSVERAGLLGGV---TIRGLPADDS--YKLRGDALEAAIEEDLKKGKIPFYI 297
           DQ HSS  +A L+GG+    IR L  D S  Y +  ++LE AI  DL KG IPF+I
Sbjct: 236 DQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFI 291

Length = 539

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score =  158 bits (403), Expect = 2e-46
 Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 12/164 (7%)

Query: 134 FHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLAC 193
           F A F T    PA++ ++L+ +   I FTW  SPA TE+E  +++WL K+  LP E    
Sbjct: 1   FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSE---- 56

Query: 194 SGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV 253
                 GV     SE+ L+ALL A+ +  +R+K           I  LV  CSDQAH SV
Sbjct: 57  ---DADGVFTSGGSESNLLALLAARDRARKRLKAGGGR-----GIDKLVIVCSDQAHVSV 108

Query: 254 ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
           E+A     V +R +P D+  ++  +ALEAAI+ED  +G  P  +
Sbjct: 109 EKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMV 152

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

 Score = 90.5 bits (225), Expect = 2e-20
 Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 21/221 (9%)

Query: 78  YLENIRDRRVLPTVEPGYLRPLIPETAPD--TPDTWQEVMSDIER-VIMPGVTHWHSPKF 134
                  R    ++ P +        AP+   P   +EV+ ++   +I   +     P+ 
Sbjct: 7   KDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPL--EEVLDELAELLIKDELYLDGHPRA 64

Query: 135 HAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACS 194
           +         P + A++L  ++         SPA  ELE  +++ L  +L  P+E     
Sbjct: 65  NLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEAS--- 121

Query: 195 GGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL-VGYCSDQAHSSV 253
                G      +EA L+ALL A+ +  +R         +S          CS+ AH S 
Sbjct: 122 -----GTFTSGGTEANLLALLAARERWRKR------ALAESGKPGGKPNIVCSETAHFSF 170

Query: 254 ERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEEDLKKGKI 293
           E+A    G+ +R +P     Y++  DALE AI+E+   G +
Sbjct: 171 EKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVV 211

Length = 460

>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 26/122 (21%)

Query: 167 PACTELEVVMLDWLGKMLDLPKEF-LACSGGKGGGVIQGTASEATLVALLGAKAKTMQRV 225
           P   +LE   ++ LG++L LP  +    SGG          +EA + A+  A+       
Sbjct: 55  PGTAKLEEEAVEMLGELLHLPDAYGYITSGG----------TEANIQAVRAAR----NLA 100

Query: 226 KEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE 285
           K   P+     I+        + AH S ++A  + GV +R  P DD Y++   A+E  I+
Sbjct: 101 KAEKPN-----IVV------PESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLID 149

Query: 286 ED 287
           ++
Sbjct: 150 DN 151

Length = 371

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
KOG0628|consensus	511		100.0
PLN02590	539	probable tyrosine decarboxylase	100.0
PLN02880	490	tyrosine decarboxylase	100.0
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	100.0
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	100.0
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	100.0
KOG0629|consensus	510		100.0
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.97
PLN02263	470	serine decarboxylase	99.96
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.94
PLN03032	374	serine decarboxylase; Provisional	99.89
PRK02769	380	histidine decarboxylase; Provisional	99.88
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.84
KOG1383|consensus	491		99.67
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.49
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.42
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.38
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.34
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.31
PRK05367	954	glycine dehydrogenase; Provisional	99.21
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.15
PRK04366	481	glycine dehydrogenase subunit 2; Validated	98.95
PLN02590	539	probable tyrosine decarboxylase	98.93
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	98.7
KOG1549|consensus	428		98.69
PLN02651	364	cysteine desulfurase	98.68
PLN02880	490	tyrosine decarboxylase	98.62
PRK02948	381	cysteine desulfurase; Provisional	98.6
PRK14012	404	cysteine desulfurase; Provisional	98.56
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	98.56
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	98.53
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	98.53
PRK12566	954	glycine dehydrogenase; Provisional	98.39
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	98.26
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.23
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	98.23
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	98.19
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	98.15
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	98.15
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	98.13
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	98.12
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	98.1
PLN02414	993	glycine dehydrogenase (decarboxylating)	98.09
PRK10874	401	cysteine sulfinate desulfinase; Provisional	98.06
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	98.02
KOG1368|consensus	384		97.99
PLN02721	353	threonine aldolase	97.97
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	97.92
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	97.88
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	97.84
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	97.82
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	97.8
cd00609	350	AAT_like Aspartate aminotransferase family. This f	97.79
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	97.78
PRK08361	391	aspartate aminotransferase; Provisional	97.78
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	97.75
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	97.72
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	97.69
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	97.63
PRK09082	386	methionine aminotransferase; Validated	97.62
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	97.59
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	97.53
PRK07179	407	hypothetical protein; Provisional	97.52
PRK06108	382	aspartate aminotransferase; Provisional	97.51
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	97.48
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	97.44
PLN02409	401	serine--glyoxylate aminotransaminase	97.39
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	97.37
PRK08960	387	hypothetical protein; Provisional	97.37
PRK05764	393	aspartate aminotransferase; Provisional	97.33
PLN02656	409	tyrosine transaminase	97.32
PTZ00433	412	tyrosine aminotransferase; Provisional	97.31
PRK05957	389	aspartate aminotransferase; Provisional	97.31
PRK06207	405	aspartate aminotransferase; Provisional	97.31
PRK12414	384	putative aminotransferase; Provisional	97.28
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	97.28
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	97.24
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	97.23
PRK07309	391	aromatic amino acid aminotransferase; Validated	97.19
PLN00175	413	aminotransferase family protein; Provisional	97.19
PRK07777	387	aminotransferase; Validated	97.19
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	97.17
PRK06225	380	aspartate aminotransferase; Provisional	97.17
PRK07337	388	aminotransferase; Validated	97.17
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	97.12
PLN02231	534	alanine transaminase	97.11
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	97.11
TIGR01814	406	kynureninase kynureninase. This model describes ky	97.11
PRK07682	378	hypothetical protein; Validated	97.1
PRK08912	387	hypothetical protein; Provisional	97.1
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	97.06
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	97.06
PRK10534	333	L-threonine aldolase; Provisional	97.04
PTZ00377	481	alanine aminotransferase; Provisional	97.01
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	97.0
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	96.99
PRK06836	394	aspartate aminotransferase; Provisional	96.96
PLN02368	407	alanine transaminase	96.95
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	96.94
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	96.94
PTZ00094	452	serine hydroxymethyltransferase; Provisional	96.92
PRK08636	403	aspartate aminotransferase; Provisional	96.92
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	96.91
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	96.89
PRK05942	394	aspartate aminotransferase; Provisional	96.86
PLN02483	489	serine palmitoyltransferase	96.86
PRK07683	387	aminotransferase A; Validated	96.84
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	96.81
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	96.8
PRK07324	373	transaminase; Validated	96.79
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	96.78
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	96.78
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	96.76
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	96.75
PLN02187	462	rooty/superroot1	96.74
PRK07550	386	hypothetical protein; Provisional	96.74
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	96.73
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	96.72
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	96.67
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	96.67
PRK08363	398	alanine aminotransferase; Validated	96.64
PRK08068	389	transaminase; Reviewed	96.62
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	96.61
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	96.59
PRK06348	384	aspartate aminotransferase; Provisional	96.57
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	96.56
KOG0630|consensus	838		96.55
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	96.52
KOG0628|consensus	511		96.51
KOG2040|consensus	1001		96.5
PRK15399	713	lysine decarboxylase LdcC; Provisional	96.5
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	96.48
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	96.46
PRK09105	370	putative aminotransferase; Provisional	96.4
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	96.39
PRK01533	366	histidinol-phosphate aminotransferase; Validated	96.39
PLN02724	805	Molybdenum cofactor sulfurase	96.38
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	96.38
PRK15400	714	lysine decarboxylase CadA; Provisional	96.32
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	96.32
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	96.29
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	96.28
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	96.25
PRK00950	361	histidinol-phosphate aminotransferase; Validated	96.24
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	96.22
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	96.2
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	96.14
PRK07681	399	aspartate aminotransferase; Provisional	96.14
PRK13393	406	5-aminolevulinate synthase; Provisional	96.14
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	96.09
PRK09257	396	aromatic amino acid aminotransferase; Provisional	96.09
PRK06107	402	aspartate aminotransferase; Provisional	96.06
PRK13392	410	5-aminolevulinate synthase; Provisional	96.05
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	96.04
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	96.03
PRK08175	395	aminotransferase; Validated	96.03
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	95.94
PRK15029	755	arginine decarboxylase; Provisional	95.93
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	95.88
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	95.88
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	95.86
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	95.85
PLN02414	993	glycine dehydrogenase (decarboxylating)	95.85
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	95.84
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	95.73
PRK13578	720	ornithine decarboxylase; Provisional	95.71
PRK06290	410	aspartate aminotransferase; Provisional	95.67
PRK09265	404	aminotransferase AlaT; Validated	95.59
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	95.59
PRK02731	367	histidinol-phosphate aminotransferase; Validated	95.47
PRK03321	352	putative aminotransferase; Provisional	95.45
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	95.44
PRK09148	405	aminotransferase; Validated	95.42
PRK08637	388	hypothetical protein; Provisional	95.4
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	95.38
PRK07366	388	succinyldiaminopimelate transaminase; Validated	95.37
PTZ00376	404	aspartate aminotransferase; Provisional	95.34
PRK09064	407	5-aminolevulinate synthase; Validated	95.23
PRK01278	389	argD acetylornithine transaminase protein; Provisi	95.21
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	95.12
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	95.11
PRK07505	402	hypothetical protein; Provisional	95.1
PRK06855	433	aminotransferase; Validated	95.1
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	95.02
PRK13034	416	serine hydroxymethyltransferase; Reviewed	94.94
PRK02936	377	argD acetylornithine aminotransferase; Provisional	94.91
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	94.9
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	94.9
PRK04311	464	selenocysteine synthase; Provisional	94.88
PLN02822	481	serine palmitoyltransferase	94.69
PRK07908	349	hypothetical protein; Provisional	94.6
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	94.54
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	94.5
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	94.5
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	94.49
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	94.44
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	94.4
PRK07568	397	aspartate aminotransferase; Provisional	94.34
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	94.26
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	94.14
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	94.13
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	94.1
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	94.03
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	93.93
PLN02672	1082	methionine S-methyltransferase	93.81
PRK05367	954	glycine dehydrogenase; Provisional	93.78
PRK05839	374	hypothetical protein; Provisional	93.74
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	93.73
PRK06425	332	histidinol-phosphate aminotransferase; Validated	93.56
PRK02627	396	acetylornithine aminotransferase; Provisional	93.36
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	93.3
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	93.07
KOG0259|consensus	447		93.0
PLN02242	418	methionine gamma-lyase	92.9
PLN02955	476	8-amino-7-oxononanoate synthase	92.84
PRK03715	395	argD acetylornithine transaminase protein; Provisi	92.75
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	92.73
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	92.73
PRK03244	398	argD acetylornithine aminotransferase; Provisional	92.7
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	92.68
PRK07050	394	cystathionine beta-lyase; Provisional	92.64
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	92.61
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	92.55
PRK06234	400	methionine gamma-lyase; Provisional	92.48
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	92.43
PRK13237	460	tyrosine phenol-lyase; Provisional	92.37
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	92.34
PRK05968	389	hypothetical protein; Provisional	92.31
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	92.22
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	92.19
PRK07503	403	methionine gamma-lyase; Provisional	92.11
PRK07392	360	threonine-phosphate decarboxylase; Validated	92.08
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	92.02
PRK08574	385	cystathionine gamma-synthase; Provisional	91.97
PRK09275	527	aspartate aminotransferase; Provisional	91.71
PRK06358	354	threonine-phosphate decarboxylase; Provisional	91.62
PLN03226	475	serine hydroxymethyltransferase; Provisional	91.33
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	91.22
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	91.19
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	91.19
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	91.18
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	91.18
PRK08247	366	cystathionine gamma-synthase; Reviewed	91.09
PRK08249	398	cystathionine gamma-synthase; Provisional	91.07
PRK08354	311	putative aminotransferase; Provisional	90.97
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	90.92
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	90.76
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	90.42
PRK03080	378	phosphoserine aminotransferase; Provisional	90.4
PRK12403	460	putative aminotransferase; Provisional	89.98
PTZ00125	400	ornithine aminotransferase-like protein; Provision	89.76
PRK08056	356	threonine-phosphate decarboxylase; Provisional	89.72
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	89.43
KOG0258|consensus	475		89.41
PRK04260	375	acetylornithine aminotransferase; Provisional	88.72
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	88.45
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	88.25
PRK05939	397	hypothetical protein; Provisional	88.18
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	87.81
PRK06767	386	methionine gamma-lyase; Provisional	87.56
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	87.52
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	87.25
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	87.19
PLN02624	474	ornithine-delta-aminotransferase	86.85
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	86.64
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	86.55
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	86.4
PRK08776	405	cystathionine gamma-synthase; Provisional	86.15
PRK07046	453	aminotransferase; Validated	85.24
PRK07811	388	cystathionine gamma-synthase; Provisional	85.22
KOG0257|consensus	420		85.07
KOG0256|consensus	471		84.27
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	84.27
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	84.05
PRK08064	390	cystathionine beta-lyase; Provisional	84.01
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	84.0
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	83.85
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	83.7
PRK08045	386	cystathionine gamma-synthase; Provisional	83.66
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	83.18
PRK06917	447	hypothetical protein; Provisional	83.03
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	82.9
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	82.74
PRK05965	459	hypothetical protein; Provisional	82.49
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	82.4
PLN02271	586	serine hydroxymethyltransferase	82.17
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	81.89
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	81.75
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	81.75
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	81.73
PRK07678	451	aminotransferase; Validated	81.64
PRK07049	427	methionine gamma-lyase; Validated	81.19
PRK08861	388	cystathionine gamma-synthase; Provisional	80.67
PRK07671	377	cystathionine beta-lyase; Provisional	80.53
PRK07481	449	hypothetical protein; Provisional	80.31

>KOG0628|consensus

Probab=100.00  E-value=1.5e-56  Score=412.21  Aligned_cols=239  Identities=55%  Similarity=1.060  Sum_probs=227.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhhhhhcchhhhhccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhh
Q psy1678          17 GDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYL   96 (297)
Q Consensus        17 ~~~~~f~~~~~~~vd~i~~y~~~~~~~~v~~~v~p~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p~~l   96 (297)
                      ||++|||++||+|||||+|||++|++|||+|+|+||+                                          +
T Consensus         1 Md~~efR~~gk~mVD~IadY~e~ir~r~v~P~v~PGY------------------------------------------l   38 (511)
T KOG0628|consen    1 MDSEEFREEGKEMVDYIADYLENIRKRRVLPDVKPGY------------------------------------------L   38 (511)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcch------------------------------------------h
Confidence            8999999999999999999999999999999999996                                          2


Q ss_pred             hccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHH
Q psy1678          97 RPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVM  176 (297)
Q Consensus        97 ~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v  176 (297)
                      ++.++...|++|.++++|++++...+.|+++||+||+|++|++++.+++++++|+|...++.-+++|.+||+.|++|..+
T Consensus        39 ~~llP~~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~fhAyfpa~~s~~siladmLs~~i~~vGFtW~ssPa~TELE~iv  118 (511)
T KOG0628|consen   39 RDLLPSKAPEKPESWEDILGDLEKIIMPGITHWQHPHFHAYFPAGNSYPSILADMLSGGIGCVGFTWASSPACTELEVIV  118 (511)
T ss_pred             hhhCCCCCCCChhhHHHHHHHHHHHccCCCcccCCCceeeEccCccchHHHHHHHHhcccccccceeecCcchHHHHHHH
Confidence            35566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678         177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA  256 (297)
Q Consensus       177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka  256 (297)
                      ++||++|+|+|+.|++.+.+.+||++.+.+|||+|.||++||...+.+.++..+.+.++....++++|||+++|+|++||
T Consensus       119 mDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka  198 (511)
T KOG0628|consen  119 MDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVEKA  198 (511)
T ss_pred             HHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHHHh
Confidence            99999999999999888888999999999999999999999999999888777777777777999999999999999999


Q ss_pred             HHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678         257 GLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI  297 (297)
Q Consensus       257 a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v  297 (297)
                      |-+.|+++|.+|+|.++.|+.+.|+++|++|+++|++||+|
T Consensus       199 ~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v  239 (511)
T KOG0628|consen  199 CLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFV  239 (511)
T ss_pred             HhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEE
Confidence            99999999999999999999999999999999999999986

>PLN02590 probable tyrosine decarboxylase

Probab=100.00  E-value=8.8e-49  Score=381.22  Aligned_cols=231  Identities=44%  Similarity=0.880  Sum_probs=212.9

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhcCC----CCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCc
Q psy1678          57 IMGDVNEFKDFAKAMVDYVGNYLENIRD----RRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSP  132 (297)
Q Consensus        57 ~p~~~e~f~~~l~~v~d~i~~~~~~~~~----~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p  132 (297)
                      .++++++|++.++++++.+.+|++++.+    +||.++..|+++++.++..+|++|.+++++++++.+.+.++.++|+||
T Consensus        52 ~~m~~~~~r~~~~~~~d~i~~~~~~~~~~~~~~pv~~~~~p~~l~~~l~~~~P~~g~~~~~il~~~~~~i~p~~~~~~hP  131 (539)
T PLN02590         52 KPMDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGITHWQSP  131 (539)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCChHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCcCCCC
Confidence            4589999999999999999999998877    799999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHH
Q psy1678         133 KFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLV  212 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~  212 (297)
                      |||||++++++++++++|||++++|+|++.|+.||++++||++|++||++|+|+|+.++  ..+.++|+||||||||||+
T Consensus       132 ~f~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~--~~~~~gG~~~sGgSeAnl~  209 (539)
T PLN02590        132 SYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFL--STGNGGGVIQGTGCEAVLV  209 (539)
T ss_pred             CeeEeccCCCcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCcccc--cCCCCceEEcCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998654  1234689999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCC---ceEEeeCC--CCCCcCHHHHHHHHHHH
Q psy1678         213 ALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPAD--DSYKLRGDALEAAIEED  287 (297)
Q Consensus       213 Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~---~v~~Vp~d--~~~~md~~~L~~~i~~~  287 (297)
                      ||++||++.+++.+..        ..+++++|||+++|||+.|||+++|+   +|++||+|  ++++||+++|+++|++|
T Consensus       210 al~aAR~~~~~~~g~~--------~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d  281 (539)
T PLN02590        210 VVLAARDRILKKVGKT--------LLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHD  281 (539)
T ss_pred             HHHHHHHHHHhhhccc--------CCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHH
Confidence            9999999876542211        14789999999999999999999999   69999999  46899999999999999


Q ss_pred             HHCCCccEEc
Q psy1678         288 LKKGKIPFYI  297 (297)
Q Consensus       288 ~~~G~~Pf~v  297 (297)
                      +++|++||+|
T Consensus       282 ~~~g~~P~~V  291 (539)
T PLN02590        282 LAKGFIPFFI  291 (539)
T ss_pred             HhcCCCcEEE
Confidence            9999999987

>PLN02880 tyrosine decarboxylase

Probab=100.00  E-value=4.2e-47  Score=368.31  Aligned_cols=230  Identities=44%  Similarity=0.875  Sum_probs=212.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCcccccc
Q psy1678          58 MGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAY  137 (297)
Q Consensus        58 p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~  137 (297)
                      .+++++|++.++++++.+.+|+++..++||.++..|+++++.++..+|++|.+.+++++++.+.+.+++++|+||+||||
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~hP~f~~~   88 (490)
T PLN02880          9 PMDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQAKILPGVTHWQSPNYFAY   88 (490)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEe
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHH
Q psy1678         138 FPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGA  217 (297)
Q Consensus       138 ~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~A  217 (297)
                      ++++++++++++|++++.+|+|+.+|+.||++++||++|++|+++|+|+|+.+.  ..+.++|+||+|||+||++||++|
T Consensus        89 ~~~~~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~--~~~~~gG~~tsggs~anl~al~~A  166 (490)
T PLN02880         89 YPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFL--STGNGGGVIQGTASEAVLVVLLAA  166 (490)
T ss_pred             ccCCCcHHHHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhh--cCCCCceEEcCccHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998653  123468999999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCC---ceEEeeCCC--CCCcCHHHHHHHHHHHHHCCC
Q psy1678         218 KAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADD--SYKLRGDALEAAIEEDLKKGK  292 (297)
Q Consensus       218 R~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~---~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G~  292 (297)
                      |++.+++.+..+        .++++||+|+++|||+.|||+++|+   +|+.||+|+  +++||+++|+++|++++++|+
T Consensus       167 R~~~~~~~g~~~--------~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~  238 (490)
T PLN02880        167 RDRVLRKVGKNA--------LEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGL  238 (490)
T ss_pred             HHHHHHHhcccc--------cCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCC
Confidence            998765432111        3678999999999999999999999   599999985  789999999999999999999


Q ss_pred             ccEEc
Q psy1678         293 IPFYI  297 (297)
Q Consensus       293 ~Pf~v  297 (297)
                      +||+|
T Consensus       239 ~p~~v  243 (490)
T PLN02880        239 IPFFL  243 (490)
T ss_pred             ccEEE
Confidence            99986

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=2.5e-43  Score=331.55  Aligned_cols=198  Identities=38%  Similarity=0.722  Sum_probs=174.6

Q ss_pred             hhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHH
Q psy1678          93 PGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTEL  172 (297)
Q Consensus        93 p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~i  172 (297)
                      |+++++.++..+|++|.+.+++++++.+.+.++..+|+||+|+||+++++++++++++++++++|+|+..|+.+|++++|
T Consensus         1 P~~l~~~~~~~lp~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~   80 (373)
T PF00282_consen    1 PGELRARLDEELPEEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLASALNQNGFTWEASPAATEI   80 (373)
T ss_dssp             TTSSGGGCHCCHHSSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHH
T ss_pred             ChhhhhcCccccccCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHhhhcccccccccccccccc
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch
Q psy1678         173 EVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS  252 (297)
Q Consensus       173 E~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S  252 (297)
                      |++|++|+++|+|+|+++..  .+.++|+||+|||+||++|+++||++..++.+..+..  +   .+++++|+|+++|||
T Consensus        81 E~~vi~~l~~l~g~~~~~~~--~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~--~---~~~~~i~~s~~aH~S  153 (373)
T PF00282_consen   81 EREVIRWLADLFGLPESFTF--SKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVE--E---IPKPVIYVSEQAHYS  153 (373)
T ss_dssp             HHHHHHHHHHHTTGSGGTTS--TTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTT--H---CSSEEEEEETTS-TH
T ss_pred             hHHHHHHHHHHhCCcccccc--cCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccc--c---ccccccccccccccH
Confidence            99999999999999965421  1237899999999999999999999988776555432  1   468999999999999


Q ss_pred             HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678         253 VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI  297 (297)
Q Consensus       253 i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v  297 (297)
                      +.|||+++|+.+++||+|++|+||+++|+++|+++.++|++||+|
T Consensus       154 ~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~v  198 (373)
T PF00282_consen  154 IEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAV  198 (373)
T ss_dssp             HHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEE
T ss_pred             HHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceee
Confidence            999999999999999999999999999999999999999999875

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=100.00  E-value=1.1e-39  Score=320.64  Aligned_cols=236  Identities=18%  Similarity=0.222  Sum_probs=194.3

Q ss_pred             hccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCC
Q psy1678          49 RFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTH  128 (297)
Q Consensus        49 v~p~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~  128 (297)
                      +...+-.+.-+|.+.|++.+..+++.+.+|+.+..... .+..++++++.   ..+.+...+.+++++++.+.+.+++++
T Consensus         4 ~~a~flgpk~en~~~~~~~~~~~~~~~~~~r~~~~p~d-~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~l~~~sv~   79 (608)
T TIGR03811         4 LNALFIGDKAENGQLYKDLLNKLVDEHLGWRQNYMPQD-KPVISPQERTS---KSFTKTVNNMKDVLDELSSRLRTESVP   79 (608)
T ss_pred             hhheeecCcccCHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHhcc---cccccCccCHHHHHHHHHHHHhcCCCC
Confidence            34455566778999999999999999999998842110 02345665544   344555568999999999999999999


Q ss_pred             CCCc-cccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678         129 WHSP-KFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS  207 (297)
Q Consensus       129 ~~~p-~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT  207 (297)
                      |+|| ||+||+++++++++++|+++++++|+|+..|+.||+++.||++|++|||+|+||++         ++|+||||||
T Consensus        80 ~~~P~ry~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~---------~~G~~TsGGT  150 (608)
T TIGR03811        80 WHSAGRYWGHMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKN---------GWGHIVADGS  150 (608)
T ss_pred             CCCccceEEECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCC---------CCeEEeCChH
Confidence            9999 99999999999999999999999999999999999999999999999999999986         4799999999


Q ss_pred             HHHHHHHHHHHHHHH-----HHHH------hhCCCC----------------------C----Cc-CCCCce-EEEecCC
Q psy1678         208 EATLVALLGAKAKTM-----QRVK------EAHPDW----------------------K----DS-DIIANL-VGYCSDQ  248 (297)
Q Consensus       208 ~anl~Al~~AR~~~~-----~~~~------~~~~~~----------------------~----~~-~~~~~~-~i~~s~~  248 (297)
                      +||++|||+||+.+.     .+.+      ..+|+.                      .    .+ ....++ ++++|++
T Consensus       151 ~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~  230 (608)
T TIGR03811       151 LANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQT  230 (608)
T ss_pred             HHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCC
Confidence            999999999999741     1100      001110                      0    00 012233 7999999


Q ss_pred             CcchHHHHHHhcCC---ceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678         249 AHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI  297 (297)
Q Consensus       249 aH~Si~Kaa~~lg~---~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v  297 (297)
                      +|||+.|||+++|+   +++.||+|+++|||+++|+++|++++++|..||+|
T Consensus       231 aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~V  282 (608)
T TIGR03811       231 KHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGV  282 (608)
T ss_pred             ccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEE
Confidence            99999999999999   69999999999999999999999999999988875

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=100.00  E-value=1.5e-37  Score=302.65  Aligned_cols=229  Identities=16%  Similarity=0.187  Sum_probs=183.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHh--cCCCCCCCCCChhhhhccC-CCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccC
Q psy1678          62 NEFKDFAKAMVDYVGNYLEN--IRDRRVLPTVEPGYLRPLI-PETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYF  138 (297)
Q Consensus        62 e~f~~~l~~v~d~i~~~~~~--~~~~pv~~~~~p~~l~~~~-~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~  138 (297)
                      ..+.++++++.+.+++|+.+  ....++.+.     ++..+ ...+|++|.+.+++++++.+.+.+++++|+||+||||+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~hP~f~g~~   96 (522)
T TIGR03799        22 STLGRIEQKISQNLAGFLQEHIVAIEKPLSE-----IEKDFSSAEIPEQPTFVSEHTQFLLDKLVAHSVHTASPSFIGHM   96 (522)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhccCCCchh-----hhhcccccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCeEEec
Confidence            56777888888888888887  333455443     33333 46899999999999999999999999999999999999


Q ss_pred             CCC-CCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCc-cccc---cCCCCCCeEEcCChhHHHHHH
Q psy1678         139 PTA-NSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPK-EFLA---CSGGKGGGVIQGTASEATLVA  213 (297)
Q Consensus       139 ~s~-~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~-~~~~---~~~~~~~G~~tsGGT~anl~A  213 (297)
                      +++ +.....+++ +.+.+|+|+..|+.||++++||++|++|+++|+|.++ .++.   .....++|+||||||+||++|
T Consensus        97 ~~~~p~~~~~l~~-l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~A  175 (522)
T TIGR03799        97 TSALPYFMLPLSK-LMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITA  175 (522)
T ss_pred             cCCCchHHHHHHH-HHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHH
Confidence            996 344344677 6779999999999999999999999999999996432 2210   112346899999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCcC--------CCCceEEEecCCCcchHHHHHHhcCC---ceEEeeCCCCCCcCHHHHHH
Q psy1678         214 LLGAKAKTMQRVKEAHPDWKDSD--------IIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEA  282 (297)
Q Consensus       214 l~~AR~~~~~~~~~~~~~~~~~~--------~~~~~~i~~s~~aH~Si~Kaa~~lg~---~v~~Vp~d~~~~md~~~L~~  282 (297)
                      |++||++.+...+. ..++...|        ..++++||+|+.+|||+.|||+++|+   +++.||+|++|+||+++|++
T Consensus       176 l~~AR~~~~~~~~~-~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~  254 (522)
T TIGR03799       176 LWVARNRLLKADGD-FKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRD  254 (522)
T ss_pred             HHHHHHHhcccccc-ccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHH
Confidence            99999987643211 01111111        13578999999999999999999999   89999999999999999999


Q ss_pred             HHHHHHHCCCccEEc
Q psy1678         283 AIEEDLKKGKIPFYI  297 (297)
Q Consensus       283 ~i~~~~~~G~~Pf~v  297 (297)
                      +|++++++|..||+|
T Consensus       255 ~i~~~~~~g~~~~~v  269 (522)
T TIGR03799       255 KCAELAEQNIKPLAI  269 (522)
T ss_pred             HHHHHHHCCCCcEEE
Confidence            999999999999976

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>KOG0629|consensus

Probab=100.00  E-value=7.5e-38  Score=286.09  Aligned_cols=220  Identities=21%  Similarity=0.333  Sum_probs=201.8

Q ss_pred             HHHHHHHHHHHHHHHHHhcCC--CCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCC
Q psy1678          64 FKDFAKAMVDYVGNYLENIRD--RRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA  141 (297)
Q Consensus        64 f~~~l~~v~d~i~~~~~~~~~--~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~  141 (297)
                      -+.++.++++.+++|....-+  ..|.++..|++|+..+...+|+++.+.++++.+.++.+..+ +.+.|||||+.+.++
T Consensus        33 te~fl~~v~~~ll~~v~~~~dr~~kv~~fhhP~~L~~l~nlel~~~~esl~qil~~cr~tl~y~-vKTgHprffNQl~~g  111 (510)
T KOG0629|consen   33 TEPFLRAVVDILLDYVKKGFDRSQKVLDFHHPDELKELFNLELRDQPESLAQILEDCRDTLKYS-VKTGHPRFFNQLSSG  111 (510)
T ss_pred             hHhhhHHHHHHHHHhhccCCcccceeecccChHHHHHHhCcccCCChhhHHHHHHHHHHHHHhh-hccCCCcchhhhccC
Confidence            378889999999999665444  48999999999999999999999999999999999987655 467999999999999


Q ss_pred             CCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         142 NSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       142 ~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      -++.+++++|+++..|.|..+|+.+|+.+.||.+|+.-+.+++||+.+        ++|+|++||+.||+||+.+||.+.
T Consensus       112 lD~~~Lag~wlT~t~Ntn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~--------~DgIf~pggsisn~Ya~~~Aryk~  183 (510)
T KOG0629|consen  112 LDPIGLAGEWLTSTANTNMFTYEIAPVFVLMEEEVLAKMREIVGWEEG--------GDGIFAPGGSISNMYAMNCARYKN  183 (510)
T ss_pred             CCHHHHHHHHHHhccCCCCceEEecceEEeehHHHHHHHHHHhCCCCC--------CCceecCCchhHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999974        589999999999999999999998


Q ss_pred             HHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCC---ceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678         222 MQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI  297 (297)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~---~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v  297 (297)
                      .++.+..|..     ..+++++|+|+++||||.|||+++|+   +|+.|++|++|+|++++||++|.+++++|.+||+|
T Consensus       184 ~Pe~K~~Gm~-----~~p~lilFtSeesHYSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~v  257 (510)
T KOG0629|consen  184 FPEVKTKGMF-----ALPPLILFTSEESHYSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFV  257 (510)
T ss_pred             Cchhhhhhhh-----cCCcEEEEecccchhhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCCCCeEE
Confidence            8876554431     25899999999999999999999997   89999999999999999999999999999999997

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.97  E-value=1.4e-29  Score=243.04  Aligned_cols=203  Identities=24%  Similarity=0.269  Sum_probs=167.0

Q ss_pred             HHHHHhcCCCCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcC-CCCCCCCccccccCCCCCCHHHHHHHHHHH
Q psy1678          76 GNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMP-GVTHWHSPKFHAYFPTANSYPAIVADILSD  154 (297)
Q Consensus        76 ~~~~~~~~~~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~-~~~~~~~p~~~g~~~s~~~~~svl~d~l~~  154 (297)
                      .++......+.+.+...|-+-.......+|+.|.+.++++.++...... ....+.||+++.|.++++.++.++.+++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~~~   84 (460)
T COG0076           5 IDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELLVS   84 (460)
T ss_pred             HHHHHhhccCCCccccccchhhhhhhccCCccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHHHH
Confidence            3333333333333333443333444568899999999999999998444 444555999999999999999999999999


Q ss_pred             hccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy1678         155 SIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKD  234 (297)
Q Consensus       155 ~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~  234 (297)
                      ++|+|+..|+.+|+++++|++|++|+++|+|+|+.        +.|+||+||||||++|+++||++.++.....+  .  
T Consensus        85 ~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~--------~~G~~t~GgTean~lal~aar~~~~~~~~~~~--~--  152 (460)
T COG0076          85 ALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEE--------ASGTFTSGGTEANLLALLAARERWRKRALAES--G--  152 (460)
T ss_pred             HHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCC--------CceEEEcChHHHHHHHHHHHHHHHHHHhhhcc--c--
Confidence            99999999999999999999999999999999865        57999999999999999999999875432211  0  


Q ss_pred             cCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHHHHHCC
Q psy1678         235 SDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEEDLKKG  291 (297)
Q Consensus       235 ~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~~~~~G  291 (297)
                       .....++||||+++|||+.|||+++|+.++.||+++ +++||+++|+++|++++..|
T Consensus       153 -~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g  209 (460)
T COG0076         153 -KPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDENTIGG  209 (460)
T ss_pred             -ccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhhccCc
Confidence             012355899999999999999999999999999998 89999999999999999887

>PLN02263 serine decarboxylase

Probab=99.96  E-value=1.6e-29  Score=241.30  Aligned_cols=154  Identities=19%  Similarity=0.268  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCccccccCCCCCCH-HHHHHHHHHHhccccccccccCc---hhhHHHHHHHHHHHHHcCC
Q psy1678         111 WQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSY-PAIVADILSDSIACIGFTWIASP---ACTELEVVMLDWLGKMLDL  186 (297)
Q Consensus       111 ~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~-~svl~d~l~~~lN~n~~~~~~~p---~~~~iE~~v~~~l~~llg~  186 (297)
                      .+++|+++.+.+.++..+     |+|| +...++ .+.+++++...+|+-+..|..+|   .+++||++|++|+++|+|+
T Consensus        75 ~~~~l~~~~~~~~~~~~~-----~~gY-p~n~~~d~s~l~~~l~~~~nN~Gdp~~~s~~~~~s~~~E~~Vi~wla~L~g~  148 (470)
T PLN02263         75 MASVLARYRKTLVERTKH-----HLGY-PYNLDFDYGALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEI  148 (470)
T ss_pred             HHHHHHHHHHHHHhcccc-----eeCC-CCcccCChhhHHHHHHhhccCCCCccccCCcchhHHHHHHHHHHHHHHHhCC
Confidence            588999999998876543     9999 555555 79999999999999999999999   6899999999999999999


Q ss_pred             CccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEE
Q psy1678         187 PKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRG  266 (297)
Q Consensus       187 ~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~  266 (297)
                      |++.       .+|+||||||||||+||++||++.                 ++.++|+|+++|||+.|||+++|+++++
T Consensus       149 p~~~-------~~G~vtsGGTEaNL~Al~aARe~~-----------------~~~vvy~S~~aH~Sv~KAa~llgi~~~~  204 (470)
T PLN02263        149 EKNE-------YWGYITNCGTEGNLHGILVGREVF-----------------PDGILYASRESHYSVFKAARMYRMECVK  204 (470)
T ss_pred             CCCC-------CeEEEeCcHHHHHHHHHHHHHhhc-----------------CCcEEEEcCCccHHHHHHHHhcCCcceE
Confidence            8631       479999999999999999999963                 2347999999999999999999999999


Q ss_pred             eeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678         267 LPADDSYKLRGDALEAAIEEDLKKGKIPFYI  297 (297)
Q Consensus       267 Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v  297 (297)
                      ||+|++|+||+++|+++|+++.   .+||+|
T Consensus       205 Vp~d~~g~mD~~aL~~aI~~d~---~~P~iV  232 (470)
T PLN02263        205 VDTLVSGEIDCADFKAKLLANK---DKPAII  232 (470)
T ss_pred             eccCCCCcCcHHHHHHHHHhCC---CCcEEE
Confidence            9999999999999999998754   468775

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.94  E-value=6.7e-26  Score=216.74  Aligned_cols=172  Identities=15%  Similarity=0.124  Sum_probs=143.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHH
Q psy1678         101 PETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWL  180 (297)
Q Consensus       101 ~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l  180 (297)
                      ...||++|.+.+++++++...+..  .+..||+|++|+++++.+.  +.+++..++|+|.+.|..+|..+++|+++++|+
T Consensus        14 ~~~~p~~~~~~~~~~~~~~~~iyl--d~~a~~~~~~~~tt~~~p~--~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~l   89 (431)
T TIGR01788        14 KYRMPEEEMPPDAAYQLIHDELSL--DGNPRLNLATFVTTWMEPE--ARKLMDETINKNMIDKDEYPQTAEIENRCVNML   89 (431)
T ss_pred             cccCCCCCCCHHHHHHHHHHHhhh--cCCcceeeeeeeCCCCCHH--HHHHHHHHHhcCCCCcccCccHHHHHHHHHHHH
Confidence            358999999999999999987543  3557899999999887765  589999999999889999999999999999999


Q ss_pred             HHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhc
Q psy1678         181 GKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLG  260 (297)
Q Consensus       181 ~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~l  260 (297)
                      ++++|+++.     ....+|+|||||||||++|+++||++...+.+..+.      ...+++||+|+++|+|+.|+++++
T Consensus        90 a~llg~~~~-----~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~------~~~~~~ii~s~~~H~sv~ka~~~l  158 (431)
T TIGR01788        90 ADLWHAPAK-----DAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGK------PTDKPNLVMGSNVQVCWEKFARYF  158 (431)
T ss_pred             HHHhCCCCC-----CCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCcEEEEcCcchHHHHHHHHHc
Confidence            999999821     002578999999999999999999764333221111      123568999999999999999999


Q ss_pred             CCceEEeeCCCC-CCcCHHHHHHHHHHH
Q psy1678         261 GVTIRGLPADDS-YKLRGDALEAAIEED  287 (297)
Q Consensus       261 g~~v~~Vp~d~~-~~md~~~L~~~i~~~  287 (297)
                      |++++.||+|++ ++||+++|+++|+++
T Consensus       159 g~~v~~i~~d~~~~~vd~~~L~~~i~~~  186 (431)
T TIGR01788       159 DVELREVPMDPGRYVIDPEQVVEAVDEN  186 (431)
T ss_pred             CceeEEEecCCCceeeCHHHHHHHHhhC
Confidence            999999999986 699999999999764

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PLN03032 serine decarboxylase; Provisional

Probab=99.89  E-value=1.6e-22  Score=190.02  Aligned_cols=155  Identities=21%  Similarity=0.282  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCc---hhhHHHHHHHHHHHHHcCCC
Q psy1678         111 WQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASP---ACTELEVVMLDWLGKMLDLP  187 (297)
Q Consensus       111 ~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p---~~~~iE~~v~~~l~~llg~~  187 (297)
                      ..++++.+..++.     -++..|.||........+++..++....|+.+..+..++   .+.++|+++++|+++|+|++
T Consensus         8 ~~~~~~~~~~~~~-----~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~   82 (374)
T PLN03032          8 MADILASYDKLLA-----EKSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELE   82 (374)
T ss_pred             HHHHHHHHHHHHH-----HhhhhccCCCchhccChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCC
Confidence            4566777776654     244678899887765567777777776665444444433   68999999999999999998


Q ss_pred             ccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEe
Q psy1678         188 KEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGL  267 (297)
Q Consensus       188 ~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~V  267 (297)
                      ++.       .+|+|||||||||++|+++||++.                 ++.++|+|+++|||+.||++++|+.++.|
T Consensus        83 ~~~-------~~G~fTsGGTEaNl~al~~ar~~~-----------------~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V  138 (374)
T PLN03032         83 KDE-------YWGYITTCGTEGNLHGILVGREVF-----------------PDGILYASRESHYSVFKAARMYRMEAVKV  138 (374)
T ss_pred             Ccc-------CCEEEeCchHHHHHHHHHHHHHhC-----------------CCcEEEeCCCceeHHHHHHHHcCCCCeEe
Confidence            642       379999999999999999999852                 12378999999999999999999999999


Q ss_pred             eCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678         268 PADDSYKLRGDALEAAIEEDLKKGKIPFYI  297 (297)
Q Consensus       268 p~d~~~~md~~~L~~~i~~~~~~G~~Pf~v  297 (297)
                      |+|++|+||+++|+++|+++.  + .|++|
T Consensus       139 ~~d~~g~id~~~L~~~i~~~~--~-~~~lv  165 (374)
T PLN03032        139 PTLPSGEIDYDDLERALAKNR--D-KPAIL  165 (374)
T ss_pred             eeCCCCcCcHHHHHHHHHHcC--C-CCEEE
Confidence            999999999999999998642  3 46554

>PRK02769 histidine decarboxylase; Provisional

Probab=99.88  E-value=4.9e-22  Score=187.58  Aligned_cols=153  Identities=20%  Similarity=0.199  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCccccccCCCCC-CHHHHHHHHHHHhccccccccccCc----hhhHHHHHHHHHHHHHcC
Q psy1678         111 WQEVMSDIERVIMPGVTHWHSPKFHAYFPTAN-SYPAIVADILSDSIACIGFTWIASP----ACTELEVVMLDWLGKMLD  185 (297)
Q Consensus       111 ~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~-~~~svl~d~l~~~lN~n~~~~~~~p----~~~~iE~~v~~~l~~llg  185 (297)
                      ..+.|+++...+.      +||+++.+++... ...+.+.+++....|+.+ .|..++    .++.+|+++++|+++|+|
T Consensus         7 ~~~~~~~~~~~~~------~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~g-np~~~~~~g~~~~~~e~~~~~~~a~l~g   79 (380)
T PRK02769          7 DQKEIEDFWLYLR------HNQYFNVGYPEAADFDYSALKRFFSFSINNCG-DPYSKSNYPLNSFDFERDVMNFFAELFK   79 (380)
T ss_pred             HHHHHHHHHHHHH------HhhhcccCCCchhhcCHHHHHHHHHhhhccCC-CccccCCCCCChHHHHHHHHHHHHHHhC
Confidence            3556666666543      5677665554444 446888999998888644 555555    378999999999999999


Q ss_pred             CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceE
Q psy1678         186 LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIR  265 (297)
Q Consensus       186 ~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~  265 (297)
                      +++..       .+|+|||||||||++|+++||++.                 +..+||+|+++|||+.|+++++|++++
T Consensus        80 ~~~~~-------~~G~~TsGgTean~~a~~~ar~~~-----------------~~~~ii~s~~~H~Sv~ka~~~lg~~~~  135 (380)
T PRK02769         80 IPFNE-------SWGYITNGGTEGNLYGCYLARELF-----------------PDGTLYYSKDTHYSVSKIARLLRIKSR  135 (380)
T ss_pred             CCCCC-------CCEEEecChHHHHHHHHHHHHHhC-----------------CCcEEEeCCCceehHHHHHHHcCCCCc
Confidence            98532       479999999999999999999852                 123799999999999999999999999


Q ss_pred             EeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678         266 GLPADDSYKLRGDALEAAIEEDLKKGKIPFYI  297 (297)
Q Consensus       266 ~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v  297 (297)
                      .||++++|+||+++|+++|+++   |..|++|
T Consensus       136 ~V~~~~~g~id~~~L~~~i~~~---~~~t~lv  164 (380)
T PRK02769        136 VITSLPNGEIDYDDLISKIKEN---KNQPPII  164 (380)
T ss_pred             eeccCCCCcCcHHHHHHHHHhC---CCCcEEE
Confidence            9999999999999999999876   6566654

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.84  E-value=6.1e-20  Score=170.43  Aligned_cols=151  Identities=40%  Similarity=0.622  Sum_probs=128.9

Q ss_pred             ccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHH
Q psy1678         134 FHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVA  213 (297)
Q Consensus       134 ~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~A  213 (297)
                      |+++++++++++++++|+++..+|+|...|..+|..+++|+++++|+++++|++..       ...|+||+|||+||+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~-------~~~~~~t~ggt~a~~~a   73 (345)
T cd06450           1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSE-------DADGVFTSGGSESNLLA   73 (345)
T ss_pred             CcccccCCCcHHHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCC-------CCCEEEeCChhHHHHHH
Confidence            68888889999999999999999999999999999999999999999999999721       13699999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCc
Q psy1678         214 LLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKI  293 (297)
Q Consensus       214 l~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~  293 (297)
                      +.++|++...+.+..+.     ....+.+|++|+.+|+|+.+++.++|.+++.||+|+++++|+++|+++|.++.++|..
T Consensus        74 l~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~  148 (345)
T cd06450          74 LLAARDRARKRLKAGGG-----RGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLN  148 (345)
T ss_pred             HHHHHHHhhhhhhcccc-----cccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCC
Confidence            99998865443221110     0123568999999999999999999999999999999999999999999998888876


Q ss_pred             cEE
Q psy1678         294 PFY  296 (297)
Q Consensus       294 Pf~  296 (297)
                      |.+
T Consensus       149 ~~~  151 (345)
T cd06450         149 PIM  151 (345)
T ss_pred             cEE
Confidence            644

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>KOG1383|consensus

Probab=99.67  E-value=2.3e-16  Score=147.12  Aligned_cols=164  Identities=15%  Similarity=0.127  Sum_probs=134.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCC-CCHHHHHHHHHHHhccc-cccccccCchhhHHHHHHHH
Q psy1678         101 PETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA-NSYPAIVADILSDSIAC-IGFTWIASPACTELEVVMLD  178 (297)
Q Consensus       101 ~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~-~~~~svl~d~l~~~lN~-n~~~~~~~p~~~~iE~~v~~  178 (297)
                      ..+||+.|.+.+++++.+.+...-+.. |.-.+..+-++.. +..    -.++...+|. |....+..|+.+.+|++|++
T Consensus        53 ~~~lP~~gl~~d~v~~~i~~~~~ld~~-~~~~~vS~~v~~~~~~~----~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vn  127 (491)
T KOG1383|consen   53 FFTLPSKGLPKDAVLELINDELMLDGN-PRLGLASGVVYWGEPEL----DKLIMEAYNKFNPLHPDEFPVVRKLEAECVN  127 (491)
T ss_pred             eecCCCCCCCHHHHHHHHHHHhccCCC-cccCeeeEEEecCCcch----hhHHHHHHhhcCccCccccchhHHHHHHHHH
Confidence            368999999999999999998665554 5555555544443 233    3445555555 77899999999999999999


Q ss_pred             HHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHH
Q psy1678         179 WLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGL  258 (297)
Q Consensus       179 ~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~  258 (297)
                      ++|.||+.|+.        .+|..|+|||||.+.+.+..|++....+   +        +.++.++++...|.+++|+++
T Consensus       128 m~~~L~~~~~~--------~~g~~t~G~Ses~l~~~k~~~~~r~~~k---~--------I~~p~iv~~~~v~~a~eK~a~  188 (491)
T KOG1383|consen  128 MIANLFNAPSD--------SCGCGTVGGSESGLAAKKSYRNRRKAQK---G--------IDKPNIVTPQNVHAAFEKAAR  188 (491)
T ss_pred             HHHHHhcCCcc--------ccCccccccchHHHHHHHHHHHHHHhcc---C--------CCCccccchHHHHHHHHHHHh
Confidence            99999999954        5899999999999999999998765421   1        467788999999999999999


Q ss_pred             hcCCceEEeeCC-CCCCcCHHHHHHHHHHHH
Q psy1678         259 LGGVTIRGLPAD-DSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       259 ~lg~~v~~Vp~d-~~~~md~~~L~~~i~~~~  288 (297)
                      ++++.++.||+| .+++||+..+++.|++++
T Consensus       189 yf~v~l~~V~~~~~~~~~D~~k~~~~i~eNt  219 (491)
T KOG1383|consen  189 YFEVELREVPLDEGDYRVDPGKVVRMIDENT  219 (491)
T ss_pred             hEEEEEEeeeccccceEecHHHHHHHhccce
Confidence            999999999999 699999999999998865

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.49  E-value=6.2e-13  Score=124.62  Aligned_cols=150  Identities=21%  Similarity=0.229  Sum_probs=115.3

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCc
Q psy1678         109 DTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPK  188 (297)
Q Consensus       109 ~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~  188 (297)
                      .+.+++|+.|++...++ ..+.  |+++.+++++.+. ++ +.+...+..+.......|....++.++.+++++++|.++
T Consensus         2 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~-~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~   76 (371)
T PRK13520          2 LSEEEILEELEEYRSED-LKYE--RILSSMCTEPHPI-AR-KAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPD   76 (371)
T ss_pred             CCHHHHHHHHHHHHhcC-CCHH--HeeeeeecCchHH-HH-HHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCC
Confidence            46789999999986664 4455  5899887766543 22 444444444333333346678888999999999999986


Q ss_pred             cccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEee
Q psy1678         189 EFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLP  268 (297)
Q Consensus       189 ~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp  268 (297)
                      .         .++||+|||++|..++.++++...               .++..|++++.+|+|+.++++..|++++.||
T Consensus        77 ~---------~~~~~~ggt~a~~~a~~~~~~~~~---------------~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~  132 (371)
T PRK13520         77 A---------YGYITSGGTEANIQAVRAARNLAK---------------AEKPNIVVPESAHFSFDKAADMLGVELRRAP  132 (371)
T ss_pred             C---------CeEEecCcHHHHHHHHHHHHhhcc---------------CCCceEEecCcchHHHHHHHHHcCceEEEec
Confidence            3         589999999999999999876421               1223678899999999999999999999999


Q ss_pred             CCCCCCcCHHHHHHHHHHH
Q psy1678         269 ADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       269 ~d~~~~md~~~L~~~i~~~  287 (297)
                      ++.++.+|+++|+++|+++
T Consensus       133 ~~~~~~~d~~~l~~~i~~~  151 (371)
T PRK13520        133 LDDDYRVDVKAVEDLIDDN  151 (371)
T ss_pred             CCCCCcCCHHHHHHHHhhC
Confidence            9999999999999999753

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.42  E-value=5.1e-12  Score=118.59  Aligned_cols=153  Identities=20%  Similarity=0.213  Sum_probs=115.5

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCcc
Q psy1678         110 TWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKE  189 (297)
Q Consensus       110 ~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~  189 (297)
                      +.+++|+++.++ ..++++.+++|++..+.+.+.+...  +.+..++..+.......|....++.++.+++++++|.++.
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~   77 (373)
T TIGR03812         1 SEEEVLEELKEY-RSEDLKYSDGRILGSMCTNPHPIAV--KAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDA   77 (373)
T ss_pred             CHHHHHHHHHHH-HhcCCCCCCCcEEEEEeCCchHHHH--HHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCC
Confidence            357899999995 4566677889998888877665432  2233333333222233466778899999999999999763


Q ss_pred             ccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeC
Q psy1678         190 FLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPA  269 (297)
Q Consensus       190 ~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~  269 (297)
                               .+++++|||++|+.++.++++.....             .+.-.|++++.+|+|+.++++..|++++.||+
T Consensus        78 ---------~~~~~~g~~~~~~~~~~~~~~~~~~~-------------~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~  135 (373)
T TIGR03812        78 ---------YGYIVSGGTEANIQAVRAAKNLAREE-------------KRTPNIIVPESAHFSFEKAAEMLGLELRYAPL  135 (373)
T ss_pred             ---------CeEEeccHHHHHHHHHHHHHHHHhcc-------------CCCcEEEECCcchHHHHHHHHHcCCeEEEEee
Confidence                     58999999999999988776532110             12235778999999999999999999999999


Q ss_pred             CCCCCcCHHHHHHHHHHH
Q psy1678         270 DDSYKLRGDALEAAIEED  287 (297)
Q Consensus       270 d~~~~md~~~L~~~i~~~  287 (297)
                      ++++.+|+++|+++|.+.
T Consensus       136 ~~~~~~d~~~l~~~l~~~  153 (373)
T TIGR03812       136 DEDYTVDVKDVEDLIDDN  153 (373)
T ss_pred             CCCCCcCHHHHHHHHhhC
Confidence            999999999999999753

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.38  E-value=2.2e-12  Score=120.05  Aligned_cols=133  Identities=17%  Similarity=0.121  Sum_probs=99.1

Q ss_pred             cccccCCCCCCHHHHHHHH---HHHhc-cccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhH
Q psy1678         133 KFHAYFPTANSYPAIVADI---LSDSI-ACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASE  208 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl~d~---l~~~l-N~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~  208 (297)
                      -|+.|-.+.+..+.++..|   +...| |++. .+..+-.+..+=.+..+++++++|.++.         .-+|||||||
T Consensus         3 iYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~---------eIiFTSG~TE   72 (386)
T COG1104           3 IYLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPE---------EIIFTSGATE   72 (386)
T ss_pred             ccccccccCCCCHHHHHHHHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCC---------eEEEecCCcH
Confidence            4676666665555544433   34443 5444 4444444444444689999999999874         6999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhc---CCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         209 ATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       209 anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~l---g~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      ||.+|++.+-.....+             .++-.|++|...|.|+...|+.+   |+.|..+|||++|++|++.|+++|+
T Consensus        73 snNlaI~g~~~a~~~~-------------~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~  139 (386)
T COG1104          73 SNNLAIKGAALAYRNA-------------QKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALR  139 (386)
T ss_pred             HHHHHHHhhHHhhhcc-------------cCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcC
Confidence            9999999864432211             12236889999999999999999   9999999999999999999999998


Q ss_pred             HHH
Q psy1678         286 EDL  288 (297)
Q Consensus       286 ~~~  288 (297)
                      .++
T Consensus       140 ~~T  142 (386)
T COG1104         140 PDT  142 (386)
T ss_pred             CCc
Confidence            653

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.34  E-value=1.5e-11  Score=118.76  Aligned_cols=163  Identities=17%  Similarity=0.127  Sum_probs=116.3

Q ss_pred             ChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHH------HHHHHHhcccccccccc
Q psy1678          92 EPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIV------ADILSDSIACIGFTWIA  165 (297)
Q Consensus        92 ~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl------~d~l~~~lN~n~~~~~~  165 (297)
                      -|++++...+..+|+.+ +.+++++++.+....+.....|++++|.-..+...+..+      +++++. +|++..  +.
T Consensus        31 ~p~~~~~~~~~~lp~~~-~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p~~~~~~~~~~~~~~~-y~~~~~--~~  106 (447)
T PRK00451         31 IPEELRLKRPLDLPPGL-SEMELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIPAVVDHIISRSEFYTA-YTPYQP--EI  106 (447)
T ss_pred             CCHHHHhCCCCCCCCCC-CHHHHHHHHHHHHhcCCCcCcCcccCcccccCCcCcHHHHHHHhchhHHHh-cCCCCC--cc
Confidence            36777777777899976 999999999998765554445787877432221111111      344444 555333  33


Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      ++...+.+.+...|+++++|.+..         .+++|+|||++ +.++..|+...                 ++-.|++
T Consensus       107 ~~g~~~~~~e~~~~la~l~g~~~~---------~v~~~~g~t~~-~~~~~~a~~~~-----------------~g~~Vlv  159 (447)
T PRK00451        107 SQGTLQAIFEYQTMICELTGMDVA---------NASMYDGATAL-AEAALMAVRIT-----------------KRKKVLV  159 (447)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCcc---------eEEecCcHHHH-HHHHHHHHHhc-----------------CCCEEEE
Confidence            566777788888999999999863         58899999984 55555554321                 1225778


Q ss_pred             cCCCcchHHHHHHh----cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSSVERAGLL----GGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~Si~Kaa~~----lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++..|+|..+++..    .|++++.||+|++ ++|+++|+++|.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~~  203 (447)
T PRK00451        160 SGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVDD  203 (447)
T ss_pred             eCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcCC
Confidence            99999999998875    5899999999988 9999999999864

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.31  E-value=5.1e-11  Score=122.33  Aligned_cols=151  Identities=11%  Similarity=0.113  Sum_probs=114.7

Q ss_pred             CHHHHHHHHHHHHcCCCCCCCCccccccCCCC--CCHHHHHHHHHHHhccccccccc-----cCchhhHHHHHHHHHHHH
Q psy1678         110 TWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA--NSYPAIVADILSDSIACIGFTWI-----ASPACTELEVVMLDWLGK  182 (297)
Q Consensus       110 ~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~--~~~~svl~d~l~~~lN~n~~~~~-----~~p~~~~iE~~v~~~l~~  182 (297)
                      +..++++.++..-.++.. ..+    +++..+  +.....+.+++...++.....+-     .+.+..+++.+...|||+
T Consensus       467 sE~e~~r~~~~L~~kn~~-~~~----~fi~lGsctmk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~e  541 (939)
T TIGR00461       467 SETEMLRYLHRLESKDLA-LNN----SMIPLGSCTMKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCS  541 (939)
T ss_pred             CHHHHHHHHHHHHhcCCC-ccc----cCCCCccCCCccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHH
Confidence            788999998887554432 222    222222  23334566777666655443333     344488999999999999


Q ss_pred             HcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCC
Q psy1678         183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGV  262 (297)
Q Consensus       183 llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~  262 (297)
                      +.|++.          .++..+||+++++++|+++|.+...+    |       ..+|.+|++|+++|.+..+++...|+
T Consensus       542 ltGmd~----------~Sl~p~aGA~gE~agL~aiR~y~~~r----g-------e~~R~~vlip~saHgtnPasa~~~G~  600 (939)
T TIGR00461       542 ITGFDA----------ISLQPNSGAQGEYAGLRVIRSYHESR----G-------ENHRNICLIPVSAHGTNPASAAMAGM  600 (939)
T ss_pred             HHCCCC----------cccCCchHHHHHHHHHHHHHHHHHhc----C-------CCCCCEEEEEccccCcCHHHHHHCCC
Confidence            999994          58889999999999999999864211    1       12466899999999999999999999


Q ss_pred             ceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         263 TIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       263 ~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +++.||+|++|++|+++|+++|++
T Consensus       601 ~Vv~V~~d~~G~iDle~L~~~i~~  624 (939)
T TIGR00461       601 QVVPVNCDQDGNIDLVDLKNKAEQ  624 (939)
T ss_pred             EEEEeccCCCCCcCHHHHHHHHhh
Confidence            999999999999999999999975

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.21  E-value=4e-10  Score=117.16  Aligned_cols=154  Identities=16%  Similarity=0.119  Sum_probs=111.5

Q ss_pred             CCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccc----c-ccCchhhHHHHHHHHHHHHH
Q psy1678         109 DTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFT----W-IASPACTELEVVMLDWLGKM  183 (297)
Q Consensus       109 ~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~----~-~~~p~~~~iE~~v~~~l~~l  183 (297)
                      .+..++++.+++.-.++..-..+.-++|. +.....+.  .++....++.....    . +.+.+..+++.+...|++++
T Consensus       478 ~sE~e~~r~~~~l~~kn~~~~~~~i~lGs-ct~~~~p~--~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~el  554 (954)
T PRK05367        478 HSETEMMRYLRRLEDKDLALDRSMIPLGS-CTMKLNAA--AEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEI  554 (954)
T ss_pred             CCHHHHHHHHHHHHhcCcCcccceeeCCc-CCCcCCHH--HHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            37889999999886666543344445787 33332222  33333333332211    1 34455789999999999999


Q ss_pred             cCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCc
Q psy1678         184 LDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVT  263 (297)
Q Consensus       184 lg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~  263 (297)
                      +|++.          .....+||+++|+.+|+++|.....+    |       ..++.+|++|+.+|+|+.+++.++|++
T Consensus       555 tG~d~----------~sl~~~~ga~ge~agL~a~r~~~~~~----G-------~~~r~~vlis~~aH~snp~sa~~~G~~  613 (954)
T PRK05367        555 TGYDA----------VSLQPNAGAQGEYAGLLAIRAYHESR----G-------EGHRDVCLIPSSAHGTNPASAVMAGMK  613 (954)
T ss_pred             HCCCC----------EEECccHHHHHHHHHHHHHHHHhhcc----C-------CCCCCEEEEEchhhhhhHHHHHHCCCE
Confidence            99984          24446789999999999988753221    1       123557899999999999999999999


Q ss_pred             eEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         264 IRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       264 v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++.||+|++|++|+++|+++|++
T Consensus       614 vv~v~~d~~G~iD~~~L~~~i~~  636 (954)
T PRK05367        614 VVVVACDENGNIDLDDLRAKAEE  636 (954)
T ss_pred             EEEECCCCCCCcCHHHHHHHHhc
Confidence            99999999999999999999975

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.15  E-value=2.4e-10  Score=109.72  Aligned_cols=149  Identities=14%  Similarity=0.066  Sum_probs=105.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHcCCCCCCC--------Ccc---------ccccCCC---CCCHHHHHHHHHHHhcccccc
Q psy1678         102 ETAPDTPDTWQEVMSDIERVIMPGVTHWH--------SPK---------FHAYFPT---ANSYPAIVADILSDSIACIGF  161 (297)
Q Consensus       102 ~~lP~~g~~~~~il~~l~~~~~~~~~~~~--------~p~---------~~g~~~s---~~~~~svl~d~l~~~lN~n~~  161 (297)
                      ..+|++|++.+.|..+|.+.-......|.        .+|         ++++.++   +.+..    +..        -
T Consensus        28 ~~~p~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~gere~rv~~~~~~~~~~~~~hgigr~~~l~----~~q--------~   95 (444)
T TIGR03531        28 RKIPEEGWDDETIELFLHELSVMDTNNFPNNVGVGEREGRVFSKLVARRHYRFCHGIGRSGDLV----APQ--------P   95 (444)
T ss_pred             CcCCccCCCHHHHHHHHHHHhcCCcCCCccccCcCcccceeechhhhhcccceecCCCCccccc----ccC--------c
Confidence            47999999999999988887555555554        222         2222222   11110    000        0


Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh-HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS-EATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN  240 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT-~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~  240 (297)
                      ....|+....++.+...|+++++|.+..        ..+++++||| ++++++|.++|.+..               ..+
T Consensus        96 ka~gss~~~~l~~~~e~~~~~~~G~~~~--------~~a~~v~~~Tg~al~laL~alr~~~~---------------~gd  152 (444)
T TIGR03531        96 KAAGSSLLYKLTNKLVKDFLKLLGLRSI--------KSAFVVPLATGMSLSLCLSALRHKRP---------------KAK  152 (444)
T ss_pred             cccCccHHHHHHHHHHHHHHHHcCCCCC--------CEEEEECCHHHHHHHHHHHHcCCcCC---------------CCC
Confidence            1223556788999999999999999842        2488999999 899999988764210               134


Q ss_pred             eEEEecCCCcchHHHHHHhcCCceEEeeC---CCCCCcCHHHHHHHHHH
Q psy1678         241 LVGYCSDQAHSSVERAGLLGGVTIRGLPA---DDSYKLRGDALEAAIEE  286 (297)
Q Consensus       241 ~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~---d~~~~md~~~L~~~i~~  286 (297)
                      .+|+++ .+|+|+.||+.++|+.++.|++   +++++||+++|+++|.+
T Consensus       153 ~VI~p~-~th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~  200 (444)
T TIGR03531       153 YVIWPR-IDQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIEE  200 (444)
T ss_pred             EEEEEC-cChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHh
Confidence            566555 6799999999999999999995   46799999999999984

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=98.95  E-value=1.7e-08  Score=98.62  Aligned_cols=161  Identities=17%  Similarity=0.154  Sum_probs=111.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCC-CCHHHHHHHHHHHhcccccccc---ccCchhhHHHHHHH
Q psy1678         102 ETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA-NSYPAIVADILSDSIACIGFTW---IASPACTELEVVML  177 (297)
Q Consensus       102 ~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~-~~~~svl~d~l~~~lN~n~~~~---~~~p~~~~iE~~v~  177 (297)
                      ..+|+  .+..++++++.+....+.....  .|.|.=.+. ..++.+...++......+-..|   ..+.+..++..++.
T Consensus        44 ~~~~~--~se~~~~~~~~~l~~~n~~~~~--~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~  119 (481)
T PRK04366         44 PELPE--VSELEVVRHYTRLSQKNYGVDT--GFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQ  119 (481)
T ss_pred             CCCCC--CCHHHHHHHHHHHHhcCCCCCc--ceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHH
Confidence            45676  8999999999988665543212  344433222 2333443333333111233344   25666778889999


Q ss_pred             HHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHH
Q psy1678         178 DWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAG  257 (297)
Q Consensus       178 ~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa  257 (297)
                      +|+++++|++.          ..++.++|+.++++++.++|.....+    |       ..++..|++++..|.+..+++
T Consensus       120 ~~la~l~G~~~----------~~l~~~~GA~a~~~~l~~~r~~~~~~----G-------d~~~~~Vlv~~~~hp~~~~~~  178 (481)
T PRK04366        120 EWLKEITGMDA----------VTLQPAAGAHGELTGLLMIRAYHEAR----G-------DTKRTEVIVPDSAHGTNPASA  178 (481)
T ss_pred             HHHHHHhCCCc----------eEEEeCcHHHHHHHHHHHHHHHhhcc----C-------cCCCCEEEEcCCccHhHHHHH
Confidence            99999999974          36677888899999888776543211    1       013446888999999999999


Q ss_pred             HhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         258 LLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       258 ~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      ...|++++.||++++|++|+++|+++|.++
T Consensus       179 ~~~G~~vv~v~~~~~~~~D~e~L~~~i~~~  208 (481)
T PRK04366        179 AMAGFKVVEIPSNEDGLVDLEALKAAVGED  208 (481)
T ss_pred             HHcCCEEEEeecCCCCCcCHHHHHhhcccC
Confidence            999999999999989999999999998654

>PLN02590 probable tyrosine decarboxylase

Probab=98.93  E-value=5.3e-09  Score=102.84  Aligned_cols=123  Identities=13%  Similarity=0.174  Sum_probs=96.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHhhhhh----cchhhhhccc-----cCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy1678          16 MGDVNEFKDFAKAMVDYVGNYLENIRD----RYVQLQRFSQ-----MGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRR   86 (297)
Q Consensus        16 ~~~~~~f~~~~~~~vd~i~~y~~~~~~----~~v~~~v~p~-----l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~p   86 (297)
                      .||+++||+.+++|||+|++|++++++    +||.|.++|+     ++...|..++.++++++++.+.+.+        .
T Consensus        53 ~m~~~~~r~~~~~~~d~i~~~~~~~~~~~~~~pv~~~~~p~~l~~~l~~~~P~~g~~~~~il~~~~~~i~p--------~  124 (539)
T PLN02590         53 PMDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMP--------G  124 (539)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCChHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhc--------c
Confidence            399999999999999999999999998    7999999997     7888899999999999999888886        5


Q ss_pred             CCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCC--CHHHHHHHHHHHhcccc
Q psy1678          87 VLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTAN--SYPAIVADILSDSIACI  159 (297)
Q Consensus        87 v~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~--~~~svl~d~l~~~lN~n  159 (297)
                      +.++..|.++ ..++..     .+...++.++....      ++ ...+.|..+|.  ..+..+-+|++.+++-+
T Consensus       125 ~~~~~hP~f~-a~~~~~-----~~~~~~lgd~l~sa------~n-~~~~~~~~sPa~t~lE~~vi~wl~~l~glp  186 (539)
T PLN02590        125 ITHWQSPSYF-AYYASS-----TSVAGFLGEMLNAG------LS-VVGFTWLTSPAATELEIIVLDWLAKLLQLP  186 (539)
T ss_pred             CCcCCCCCee-EeccCC-----CcHHHHHHHHHHHh------cc-cccCCcccCchhHHHHHHHHHHHHHHhCCC
Confidence            6667788877 444432     46677777765542      22 22455555553  56788899999999765

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=98.70  E-value=1.5e-07  Score=88.72  Aligned_cols=128  Identities=15%  Similarity=0.118  Sum_probs=87.7

Q ss_pred             ccccCCCCCCHHHHHHHH---HHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHH
Q psy1678         134 FHAYFPTANSYPAIVADI---LSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEAT  210 (297)
Q Consensus       134 ~~g~~~s~~~~~svl~d~---l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~an  210 (297)
                      ||++-..++.+..++..+   +...+.+....+..++....+..++.+++++++|.+++         ..+||+|||+++
T Consensus         2 yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---------~i~~t~~~t~a~   72 (379)
T TIGR03402         2 YLDNNATTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPD---------EIIFTSGGTESD   72 (379)
T ss_pred             cCCCcCCCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC---------eEEEeCcHHHHH
Confidence            555555555555543322   22221111112223344566667899999999998753         589999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHh---cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         211 LVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       211 l~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .+++.+.....                .++-+|+++...|+|+......   .|++++.||++++|.+|+++|++.|++
T Consensus        73 ~~al~~~~~~~----------------~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~  135 (379)
T TIGR03402        73 NTAIKSALAAQ----------------PEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITD  135 (379)
T ss_pred             HHHHHHHHHhc----------------CCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence            99998764321                0123677889999998766554   499999999999999999999999864

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>KOG1549|consensus

Probab=98.69  E-value=9.7e-08  Score=89.81  Aligned_cols=136  Identities=18%  Similarity=0.134  Sum_probs=98.9

Q ss_pred             CCCCccccccCCCCCCHHHHHHHH---HHHhc-cccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEc
Q psy1678         128 HWHSPKFHAYFPTANSYPAIVADI---LSDSI-ACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQ  203 (297)
Q Consensus       128 ~~~~p~~~g~~~s~~~~~svl~d~---l~~~l-N~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~t  203 (297)
                      +-..|-|++....++.++.|+..+   +..++ |++.. .-..-.-..+|. ....+|+|+|.++.         +.+||
T Consensus        40 ~~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~-~y~w~~~~~~E~-aR~~VAklInAd~~---------dIiFt  108 (428)
T KOG1549|consen   40 HGTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSR-SYGWKAEDAVEA-AREQVAKLINADPS---------DIVFT  108 (428)
T ss_pred             CCCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCcc-ccchhhhHHHHH-HHHHHHHHhCCCCC---------cEEEe
Confidence            335577899888888877766433   33333 33322 111222334775 78999999999875         69999


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhc---CCceEEeeCCCCCCcCHHHH
Q psy1678         204 GTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDAL  280 (297)
Q Consensus       204 sGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~l---g~~v~~Vp~d~~~~md~~~L  280 (297)
                      +|+||||.++++.--... .          + + .++ .|++..++|.|+.++++.+   |+.|+.||++.+|..|.+.|
T Consensus       109 s~ATEs~Nlvl~~v~~~~-~----------~-~-~~k-~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~  174 (428)
T KOG1549|consen  109 SGATESNNLVLKGVARFF-G----------D-K-TKK-HIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKL  174 (428)
T ss_pred             CCchHHHHHHHHHhhccc-c----------c-c-ccc-eEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHH
Confidence            999999999887632111 0          0 0 122 7889999999999999886   88999999999999999999


Q ss_pred             HHHHHHHH
Q psy1678         281 EAAIEEDL  288 (297)
Q Consensus       281 ~~~i~~~~  288 (297)
                      ++.|+.++
T Consensus       175 ~~~i~~~T  182 (428)
T KOG1549|consen  175 REAIRSKT  182 (428)
T ss_pred             HHhcCCCc
Confidence            99998754

>PLN02651 cysteine desulfurase

Probab=98.68  E-value=1.3e-07  Score=88.79  Aligned_cols=96  Identities=15%  Similarity=0.076  Sum_probs=75.9

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      +.+..+-.++.+.+++++|.+++         ..+||+|||++|.+++..++.....               +.-.|+++
T Consensus        39 ~~~~~~~~~~r~~la~~~g~~~~---------~v~~t~~~t~a~~~~l~~~~~~~~~---------------~g~~vl~~   94 (364)
T PLN02651         39 WESEDAVEKARAQVAALIGADPK---------EIIFTSGATESNNLAIKGVMHFYKD---------------KKKHVITT   94 (364)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCC---------eEEEeCCHHHHHHHHHHHHHHhccC---------------CCCEEEEc
Confidence            44455566788999999998753         5899999999999999887553211               12357789


Q ss_pred             CCCcchHHHHHHh---cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         247 DQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       247 ~~aH~Si~Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ...|+|+.+....   .|++++.||++++|.+|+++|+++|++
T Consensus        95 ~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~  137 (364)
T PLN02651         95 QTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRP  137 (364)
T ss_pred             ccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence            9999998776543   588999999999999999999999964

>PLN02880 tyrosine decarboxylase

Probab=98.62  E-value=1.8e-07  Score=91.56  Aligned_cols=123  Identities=13%  Similarity=0.183  Sum_probs=91.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHhhhhhcchhhhhccc-----cCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy1678          16 MGDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQ-----MGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPT   90 (297)
Q Consensus        16 ~~~~~~f~~~~~~~vd~i~~y~~~~~~~~v~~~v~p~-----l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~   90 (297)
                      .||+++||+.+++|+|+|++|+++++++||.|.++|+     ++...|..++.++++++++.+.+.+        ...++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~~~~~~~~l~~~~~~i~~--------~~~~~   80 (490)
T PLN02880          9 PMDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQAKILP--------GVTHW   80 (490)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhc--------CCCCC
Confidence            4999999999999999999999999999999999996     7777888888999888888887776        45556


Q ss_pred             CChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCC--CCHHHHHHHHHHHhcccc
Q psy1678          91 VEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA--NSYPAIVADILSDSIACI  159 (297)
Q Consensus        91 ~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~--~~~~svl~d~l~~~lN~n  159 (297)
                      ..|.++ ..++..     .....++.++....      ++ ...+.|..+|  ...+..+-+|+..+++-+
T Consensus        81 ~hP~f~-~~~~~~-----~~~~~~lad~l~~~------~n-~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p  138 (490)
T PLN02880         81 QSPNYF-AYYPSN-----SSVAGFLGEMLSAG------LN-IVGFSWITSPAATELEMIVLDWLAKLLNLP  138 (490)
T ss_pred             CCCCee-EeccCC-----CcHHHHHHHHHHHh------hc-cCCcccccCcccHHHHHHHHHHHHHHhCCC
Confidence            678777 444332     34557777765432      21 1133344344  356677888999888754

>PRK02948 cysteine desulfurase; Provisional

Probab=98.60  E-value=3.8e-07  Score=86.07  Aligned_cols=129  Identities=16%  Similarity=0.085  Sum_probs=88.3

Q ss_pred             ccccCCCCCCHHHHH---HHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHH
Q psy1678         134 FHAYFPTANSYPAIV---ADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEAT  210 (297)
Q Consensus       134 ~~g~~~s~~~~~svl---~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~an  210 (297)
                      ||.+-.+++.+..++   .+++.....+....+..+.....+..++.+.+++++|.+++         ..+||+|||++|
T Consensus         3 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---------~i~~~~g~t~a~   73 (381)
T PRK02948          3 YLDYAATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQ---------GIYFTSGGTESN   73 (381)
T ss_pred             eccCCCCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCC---------eEEEeCcHHHHH
Confidence            444444444444443   23333332223334445555566667799999999998753         588999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHH---HhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         211 LVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAG---LLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       211 l~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa---~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ..++.+..+...               .+.-+|+++...|+|+..+.   +..|.+++.||++++|.+|+++|++.+++
T Consensus        74 ~~~~~~~~~~~~---------------~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~  137 (381)
T PRK02948         74 YLAIQSLLNALP---------------QNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITP  137 (381)
T ss_pred             HHHHHHHHHhcc---------------CCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCC
Confidence            998877643210               11235778899999987765   44688999999999999999999998853

>PRK14012 cysteine desulfurase; Provisional

Probab=98.56  E-value=7.8e-07  Score=84.79  Aligned_cols=88  Identities=17%  Similarity=0.143  Sum_probs=70.1

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+++++++|.+.+         ..+||+|||+++.+++.+.......               +.-.|+++..+|+|+.
T Consensus        53 ~~r~~ia~~~g~~~~---------~v~~~~g~t~al~~~l~~l~~~~~~---------------~gd~Vi~~~~~~~s~~  108 (404)
T PRK14012         53 IARNQIADLIGADPR---------EIVFTSGATESDNLAIKGAAHFYQK---------------KGKHIITSKTEHKAVL  108 (404)
T ss_pred             HHHHHHHHHcCcCcC---------eEEEeCCHHHHHHHHHHHHHHhhcC---------------CCCEEEEecCccHHHH
Confidence            466799999998753         5899999999999998876432111               1125778899999998


Q ss_pred             HHHHh---cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 RAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +++..   .|++++.|++|++|.+|+++|+++|.+
T Consensus       109 ~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~  143 (404)
T PRK14012        109 DTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRD  143 (404)
T ss_pred             HHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCC
Confidence            77655   499999999999999999999999864

>TIGR02006 IscS cysteine desulfurase IscS

Probab=98.56  E-value=6.5e-07  Score=85.32  Aligned_cols=130  Identities=15%  Similarity=0.109  Sum_probs=87.6

Q ss_pred             ccccccCCCCCCHHHHHHHHHHHhcc---ccccc--cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCCh
Q psy1678         132 PKFHAYFPTANSYPAIVADILSDSIA---CIGFT--WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTA  206 (297)
Q Consensus       132 p~~~g~~~s~~~~~svl~d~l~~~lN---~n~~~--~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGG  206 (297)
                      +.||++-.+++.+..++..+ ...+.   .|...  +..+-.....-.++.+.+++++|.+++         ..+||+||
T Consensus         4 ~~yld~aa~~~~~~~v~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---------~v~~~~g~   73 (402)
T TIGR02006         4 PIYLDYAATTPVDPRVAEKM-MPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR---------EIVFTSGA   73 (402)
T ss_pred             cEEeeCCcCCCCCHHHHHHH-HHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC---------eEEEeCCH
Confidence            35777776666666654333 33331   12111  111111233444678899999998753         58999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHh---cCCceEEeeCCCCCCcCHHHHHHH
Q psy1678         207 SEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAA  283 (297)
Q Consensus       207 T~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~  283 (297)
                      |+++..++.+.+....               .+.-.|+++...|+|+.+++..   .|++++.||++++|.+|+++|++.
T Consensus        74 t~a~~~~l~~l~~~~~---------------~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~  138 (402)
T TIGR02006        74 TESNNLAIKGIAHFYK---------------SKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAA  138 (402)
T ss_pred             HHHHHHHHHHHHHhhc---------------CCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHh
Confidence            9999998877643211               1123577889999999887654   489999999999999999999998


Q ss_pred             HHH
Q psy1678         284 IEE  286 (297)
Q Consensus       284 i~~  286 (297)
                      |.+
T Consensus       139 l~~  141 (402)
T TIGR02006       139 IRD  141 (402)
T ss_pred             cCC
Confidence            854

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=98.53  E-value=9.7e-07  Score=82.44  Aligned_cols=97  Identities=22%  Similarity=0.169  Sum_probs=74.7

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      .....+..++.+++++++|.+++         ..+||+|+|++|..++.+.+.....              ..+..|+++
T Consensus        38 ~~~~~~~~~~r~~la~~~g~~~~---------~v~~~~g~t~a~~~~l~~l~~~~~~--------------~g~~~vi~~   94 (353)
T TIGR03235        38 HNAKKAVERARKQVAEALGADTE---------EVIFTSGATESNNLAILGLARAGEQ--------------KGKKHIITS   94 (353)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCC---------eEEEeCCHHHHHHHHHHHHHHhccc--------------CCCCeeeEc
Confidence            34455667799999999999753         5899999999999888765432100              122468889


Q ss_pred             CCCcchHHHHHH---hcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         247 DQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       247 ~~aH~Si~Kaa~---~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ...|+|+..+..   ..|++++.||+++++.+|+++|++.+++
T Consensus        95 ~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~  137 (353)
T TIGR03235        95 AIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRP  137 (353)
T ss_pred             ccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCC
Confidence            999999876654   3588999999999999999999998853

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=98.53  E-value=9.5e-07  Score=82.92  Aligned_cols=101  Identities=18%  Similarity=0.161  Sum_probs=78.1

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .+..++....+..++.+++++++|.+..        ...++|+|||+++..++.+.....                .+.-
T Consensus        34 ~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~v~~~~g~t~a~~~~~~~l~~~~----------------~~g~   89 (373)
T cd06453          34 VHELSARATDAYEAAREKVARFINAPSP--------DEIIFTRNTTEAINLVAYGLGRAN----------------KPGD   89 (373)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCCCC--------CeEEEeCCHHHHHHHHHHHhhhcC----------------CCCC
Confidence            4555666677777899999999998722        258899999999888887753210                0122


Q ss_pred             EEEecCCCcchH----HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       242 ~i~~s~~aH~Si----~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .|+++..+|++.    .+.++..|++++.||++.++++|+++|++.|.+
T Consensus        90 ~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  138 (373)
T cd06453          90 EIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTE  138 (373)
T ss_pred             EEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcC
Confidence            577889999985    556667899999999999999999999999865

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.39  E-value=5.8e-06  Score=85.30  Aligned_cols=156  Identities=11%  Similarity=0.072  Sum_probs=101.6

Q ss_pred             CCCCHHHHHHHHHHHHcCCCCCCCCcccccc--CCCCCCHHHHHHHHHHHhcccccccc-ccCchhhHHHHHHHHHHHHH
Q psy1678         107 TPDTWQEVMSDIERVIMPGVTHWHSPKFHAY--FPTANSYPAIVADILSDSIACIGFTW-IASPACTELEVVMLDWLGKM  183 (297)
Q Consensus       107 ~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~--~~s~~~~~svl~d~l~~~lN~n~~~~-~~~p~~~~iE~~v~~~l~~l  183 (297)
                      .+.+..++++.++..-.++..-.++..|+|-  |==++...-+.. ....+++...... +.+.+.-++=.+.-.|+|++
T Consensus       477 ~~~SE~el~r~~~~La~kn~~~~~~~~~LGsCTmK~n~~~~~~p~-s~~eF~t~hPyqp~e~sQG~lq~i~elq~~l~eL  555 (954)
T PRK12566        477 AHHSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNATSEMIPI-TWPEFAQLHPFAPREQAEGYRAMIDELEAWLCAI  555 (954)
T ss_pred             cCCCHHHHHHHHHHHHhcCcCcccCcccCcccccCcCcHHhhhcc-cchhhhcCCCCCchhhhcCHHHHHHHHHHHHHHH
Confidence            4578999999998876555432223334442  000111110111 1122333333332 44555444444455899999


Q ss_pred             cCCCccccccCCCCCCeEEcC-ChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCC
Q psy1678         184 LDLPKEFLACSGGKGGGVIQG-TASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGV  262 (297)
Q Consensus       184 lg~~~~~~~~~~~~~~G~~ts-GGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~  262 (297)
                      .|++.           ..+.. +|+++++.++++.|.+...+    |.       ..|-+|++|..+|.+..-++...|+
T Consensus       556 tGmd~-----------~Sl~p~sGA~gE~A~Lmair~yh~~~----Ge-------~~r~~vLIp~saHgtNpasa~~~Gi  613 (954)
T PRK12566        556 TGFDA-----------ICMQPNSGAQGEYAGLLAIRRYHRSR----GQ-------SQRDICLIPSSAHGTNPASAQMAGM  613 (954)
T ss_pred             HCCCe-----------EeecCCchHHHHHHHHHHHHHHHHhc----CC-------CCCCEEEecccccccCHHHHHHCCC
Confidence            99985           24454 79999999999988754322    21       2345688899999888888888999


Q ss_pred             ceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         263 TIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       263 ~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      +|+.||+|++|.+|+++|+++|+
T Consensus       614 eVv~Vp~D~~G~iDle~L~a~I~  636 (954)
T PRK12566        614 RVVIVECDPDGNVDLDDLKAKAA  636 (954)
T ss_pred             EEEEeccCCCCCcCHHHHHHHhh
Confidence            99999999999999999999997

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=98.26  E-value=9e-06  Score=77.23  Aligned_cols=130  Identities=16%  Similarity=0.109  Sum_probs=86.4

Q ss_pred             cccccCCCCCCHHHHHHHHHHHhc-----cccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678         133 KFHAYFPTANSYPAIVADILSDSI-----ACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS  207 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl~d~l~~~l-----N~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT  207 (297)
                      .|+++-..++.+..++ +.+..++     |.+...+..++.....-.++...+++++|.++.        ...+||+|+|
T Consensus        20 ~yld~~~~~~~p~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~--------~~v~~~~g~t   90 (403)
T TIGR01979        20 VYLDSAATSQKPQQVI-DAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASD--------EEIVFTRGTT   90 (403)
T ss_pred             EEEeCccccCCCHHHH-HHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCC--------CeEEEeCCHH
Confidence            3666665555555443 4443333     222222333333444444688999999999732        2589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH----HHHHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678         208 EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAA  283 (297)
Q Consensus       208 ~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si----~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~  283 (297)
                      +++..++.+......               .+.-.|+++...|+|.    .+++...|+.++.||++++|.+|+++|++.
T Consensus        91 ~~l~~~~~~~~~~~~---------------~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~  155 (403)
T TIGR01979        91 ESINLVAYSWGDSNL---------------KAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKL  155 (403)
T ss_pred             HHHHHHHHHhhhhcC---------------CCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHH
Confidence            998776665432111               1223677889999874    467778899999999999999999999998


Q ss_pred             HHH
Q psy1678         284 IEE  286 (297)
Q Consensus       284 i~~  286 (297)
                      |.+
T Consensus       156 i~~  158 (403)
T TIGR01979       156 LTE  158 (403)
T ss_pred             hcc
Confidence            864

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.23  E-value=4.1e-06  Score=78.62  Aligned_cols=102  Identities=18%  Similarity=0.253  Sum_probs=81.3

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      ....+|=.++-.||+++-|++.-          -.=-.-|+..-+++|++.|.+...+    |       ...|-+++++
T Consensus       105 qG~l~li~~Lq~~L~~ITG~Dav----------sLQP~AGAqGE~aGll~Ir~YHe~r----G-------~~~R~~~LIP  163 (496)
T COG1003         105 QGYLELIYELQEWLKEITGMDAV----------SLQPNAGAQGEYAGLLAIRAYHESR----G-------EGHRNICLIP  163 (496)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcee----------eccCCCCcchhhHHHHHHHHHHHHc----C-------CCcCcEEEee
Confidence            34556666788999999999862          1122467888999999999875432    2       1245678889


Q ss_pred             CCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHH
Q psy1678         247 DQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLK  289 (297)
Q Consensus       247 ~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~  289 (297)
                      +.||-...-+|.+.|++|+.|+||++|.+|+++|++++.+.++
T Consensus       164 ~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~~~~A  206 (496)
T COG1003         164 DSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAEDNLA  206 (496)
T ss_pred             ccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhcccee
Confidence            9999999999999999999999999999999999999986543

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=98.23  E-value=1.8e-05  Score=75.14  Aligned_cols=84  Identities=19%  Similarity=0.204  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH
Q psy1678         174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV  253 (297)
Q Consensus       174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si  253 (297)
                      .+..+.+++++|.++           .+||+|||++|..++.+..    .               +.-.|+++..+|+|+
T Consensus        66 ~~l~~~lA~~~g~~~-----------~~~~~g~t~a~~~al~~l~----~---------------~gd~Vlv~~~~h~s~  115 (387)
T PRK09331         66 ADFHEDLAEFLGMDE-----------ARVTHGAREGKFAVMHSLC----K---------------KGDYVVLDGLAHYTS  115 (387)
T ss_pred             HHHHHHHHHHhCCCc-----------EEEeCCHHHHHHHHHHHhc----C---------------CCCEEEECCCchHHH
Confidence            345567888889853           6789999999988877641    1               112577889999999


Q ss_pred             HHHHHhcCCceEEeeC--CCCCCcCHHHHHHHHHHH
Q psy1678         254 ERAGLLGGVTIRGLPA--DDSYKLRGDALEAAIEED  287 (297)
Q Consensus       254 ~Kaa~~lg~~v~~Vp~--d~~~~md~~~L~~~i~~~  287 (297)
                      ..++...|++++.||+  ++++.+|+++|+++|++.
T Consensus       116 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~  151 (387)
T PRK09331        116 YVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEV  151 (387)
T ss_pred             HHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHh
Confidence            9999999999999999  778999999999999764

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=98.19  E-value=1.8e-05  Score=73.76  Aligned_cols=95  Identities=13%  Similarity=0.056  Sum_probs=73.8

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      .+|....+..++.+++++++|.++.        ...++|+|||+++..++.+.    ..              ..+ .|+
T Consensus        26 ~~~~~~~~~~~~~~~la~~~g~~~~--------~~~~~~~~~t~al~~~~~~~----~~--------------~g~-~vl   78 (356)
T cd06451          26 RSPEFLALMDEILEGLRYVFQTENG--------LTFLLSGSGTGAMEAALSNL----LE--------------PGD-KVL   78 (356)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCC--------CEEEEecCcHHHHHHHHHHh----CC--------------CCC-EEE
Confidence            4566667777899999999999542        14788999999998887653    11              012 466


Q ss_pred             ecCCCcch--HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~S--i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...|++  +..+++..|.+++.||+|+++.+|+++|++.|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~  122 (356)
T cd06451          79 VGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQ  122 (356)
T ss_pred             EecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhc
Confidence            67778887  4677888999999999998899999999999975

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=98.15  E-value=2.7e-05  Score=73.58  Aligned_cols=94  Identities=19%  Similarity=0.176  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH  250 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH  250 (297)
                      .+++ .+..+++.+|..+.        ..-+||+|+|+++.+++.+.....+.+             ..+-.|+++...|
T Consensus        43 ~l~~-a~~~~~~~~~~~~~--------~~i~~t~g~teal~~~~~~~~~~~~~~-------------~~~~~vi~~~~e~  100 (382)
T TIGR03403        43 AIAE-ALDKLYKGINARDL--------DDIIITSCATESNNWVLKGVYFDEILK-------------GGKNHIITTEVEH  100 (382)
T ss_pred             HHHH-HHHHHHHHcCcCCC--------CeEEEeCCHHHHHHHHHHHHHHhhccc-------------CCCCEEEEcCCcc
Confidence            4444 55556667776321        258899999999998887653211100             1123577889999


Q ss_pred             chHHHHHH---hcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         251 SSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       251 ~Si~Kaa~---~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +|+..+..   ..|++++.||++++|.+|++.|+++|.+
T Consensus       101 ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~  139 (382)
T TIGR03403       101 PAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITE  139 (382)
T ss_pred             HHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhccc
Confidence            99887754   4688999999999999999999998864

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=98.15  E-value=1.1e-05  Score=73.87  Aligned_cols=94  Identities=28%  Similarity=0.382  Sum_probs=76.0

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|...|.+..+|.    .+++++|.+.           .+|+++||++|.+|+.+.-.                   +.-
T Consensus        24 ~Yg~D~~~~~l~~----~i~~l~g~e~-----------a~f~~sGT~An~~al~~~~~-------------------~~~   69 (290)
T PF01212_consen   24 AYGEDPTTARLEE----RIAELFGKEA-----------ALFVPSGTMANQLALRAHLR-------------------PGE   69 (290)
T ss_dssp             CTTSSHHHHHHHH----HHHHHHTSSE-----------EEEESSHHHHHHHHHHHHHH-------------------TTE
T ss_pred             ccCCChhHHHHHH----HHHHHcCCCE-----------EEEeCCCChHHHHHHHHHHh-------------------cCC
Confidence            5888888888886    6678999975           68999999999999988631                   123


Q ss_pred             EEEecCCCcchHHHHHH---hcCCceEEeeCCCCCCcCHHHHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEEDLK  289 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~---~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~  289 (297)
                      .++|.+.+|..+.....   +.|.+++.||.+++|.||+++|++.+++.-.
T Consensus        70 ~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~  120 (290)
T PF01212_consen   70 SVICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGA  120 (290)
T ss_dssp             EEEEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTG
T ss_pred             ceeccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccc
Confidence            57899999999987544   4789999999998899999999999987543

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=98.13  E-value=5.9e-05  Score=71.41  Aligned_cols=96  Identities=19%  Similarity=0.192  Sum_probs=71.5

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      +....++..++.+++++++|.+.+         ..+|+++|+.+...++++++...       +         +.-.|++
T Consensus        59 ~~g~~~~~~~~~~~la~~~g~~~~---------~v~~~~~g~~~~~~~~~~~~~~~-------~---------~gd~Vl~  113 (398)
T cd00613          59 SQGRLQALFELQTMLCELTGMDVA---------NASLQDEATAAAEAAGLAAIRAY-------H---------KRNKVLV  113 (398)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcc---------ceeccCchHHHHHHHHHHHHhcc-------c---------CCCEEEE
Confidence            445567778899999999998743         35566656655555555554220       0         1225778


Q ss_pred             cCCCcchHHHHHHhcC----CceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSSVERAGLLGG----VTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~Si~Kaa~~lg----~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++..|.+...++.++|    .+++.||+++++.+|+++|+++|.+
T Consensus       114 ~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  158 (398)
T cd00613         114 PDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSE  158 (398)
T ss_pred             cCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCC
Confidence            9999999999999888    8999999988889999999998854

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=98.12  E-value=1.9e-05  Score=75.33  Aligned_cols=130  Identities=13%  Similarity=0.023  Sum_probs=87.2

Q ss_pred             cccccCCCCCCHHHHHHHHHHHhc-----cccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678         133 KFHAYFPTANSYPAIVADILSDSI-----ACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS  207 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl~d~l~~~l-----N~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT  207 (297)
                      -||.+-.+++.+..++.. +..++     |.....+..++.+..+-.++.+.+++++|.++.        ..-+||+|+|
T Consensus        25 iYld~a~~~~~~~~v~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~--------~~v~~t~g~t   95 (406)
T PRK09295         25 AYLDSAASAQKPSQVIDA-EAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSA--------EELVFVRGTT   95 (406)
T ss_pred             EEEeCcccccCCHHHHHH-HHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCC--------CeEEEeCCHH
Confidence            588887776666665433 32222     222223333444555555688999999997321        1589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH----HHHHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678         208 EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAA  283 (297)
Q Consensus       208 ~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si----~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~  283 (297)
                      +++..++.+.....+               .+.-.|++++..|+|.    .+.++..|++++.||++++|.+|+++|+++
T Consensus        96 ~~l~~~~~~~~~~~~---------------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~  160 (406)
T PRK09295         96 EGINLVANSWGNSNV---------------RAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPAL  160 (406)
T ss_pred             HHHHHHHHHhhhhcC---------------CCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHh
Confidence            998877655322111               1122577888888764    556777899999999999999999999998


Q ss_pred             HHH
Q psy1678         284 IEE  286 (297)
Q Consensus       284 i~~  286 (297)
                      |.+
T Consensus       161 i~~  163 (406)
T PRK09295        161 FDE  163 (406)
T ss_pred             cCC
Confidence            854

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=98.10  E-value=2.9e-05  Score=73.78  Aligned_cols=130  Identities=12%  Similarity=0.005  Sum_probs=86.4

Q ss_pred             cccccCCCCCCHHHHHHHHHHHhccc---cc--cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678         133 KFHAYFPTANSYPAIVADILSDSIAC---IG--FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS  207 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl~d~l~~~lN~---n~--~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT  207 (297)
                      -|+.+-..++.+..+ .+.+..+++.   |.  ..+..++.....-.++.+.+++++|.++.        ..-+||+|+|
T Consensus        18 iyld~a~~~~~p~~v-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--------~~i~~t~g~t   88 (398)
T TIGR03392        18 VYLDSAATALKPQAV-IDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDA--------ENIVWTRGTT   88 (398)
T ss_pred             EEeeCccccCCCHHH-HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC--------CeEEEeCChH
Confidence            477777666655554 3444444322   21  12222333344445688999999998521        1588999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678         208 EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAA  283 (297)
Q Consensus       208 ~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~  283 (297)
                      +++..++.+....   .       +     .+.-.|++++..|+|    +.+.++..|++++.||++.++.+|+++|+++
T Consensus        89 ~~l~~~~~~~~~~---~-------~-----~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~  153 (398)
T TIGR03392        89 ESINLVAQSYARP---R-------L-----QPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPEL  153 (398)
T ss_pred             HHHHHHHHHhhhc---c-------C-----CCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHH
Confidence            9988877654211   0       0     112257788999987    4566788899999999999999999999999


Q ss_pred             HHH
Q psy1678         284 IEE  286 (297)
Q Consensus       284 i~~  286 (297)
                      |.+
T Consensus       154 i~~  156 (398)
T TIGR03392       154 LTP  156 (398)
T ss_pred             hcc
Confidence            864

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=98.09  E-value=1.4e-05  Score=83.52  Aligned_cols=95  Identities=17%  Similarity=0.095  Sum_probs=77.6

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh----HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS----EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT----~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      .+..++=.++-+|+++++|++           .-+||+++|    +++++++.+..+.       .|.       ..|-+
T Consensus       564 ~g~~~~~~~~r~~la~i~g~~-----------~v~f~pnaga~ge~a~~~vi~~~~~~-------~Gd-------~~r~~  618 (993)
T PLN02414        564 QGYQEMFEDLGDLLCEITGFD-----------SFSLQPNAGAAGEYAGLMVIRAYHLS-------RGD-------HHRNV  618 (993)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC-----------eEEEcCCCcHHHHHHHHHHHHHHHhc-------cCC-------CCCCE
Confidence            344556667999999999994           388998888    8888888776221       011       13457


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      |++|..+|.|+.+.+.+.|++|+.||+|++|.+|+++|+++|++
T Consensus       619 vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~  662 (993)
T PLN02414        619 CIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEA  662 (993)
T ss_pred             EEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhc
Confidence            88999999999999999999999999999999999999999985

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=98.06  E-value=2.4e-05  Score=74.31  Aligned_cols=130  Identities=13%  Similarity=0.025  Sum_probs=86.4

Q ss_pred             cccccCCCCCCHHHHHHHHHHHhccc---cc--cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678         133 KFHAYFPTANSYPAIVADILSDSIAC---IG--FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS  207 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl~d~l~~~lN~---n~--~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT  207 (297)
                      .||.+-..++.+..++. .+..++..   |.  ..+..+......-.++.+.+++++|.++.        ..-+||+|+|
T Consensus        21 ~yld~a~~~~~~~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~--------~~i~~~~~~t   91 (401)
T PRK10874         21 VYLDSAATALKPQAVIE-ATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDA--------KNIVWTRGTT   91 (401)
T ss_pred             EEEeCCcccCCCHHHHH-HHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCC--------CEEEEECCHH
Confidence            47777776666555543 33333322   21  12222333445555688999999998321        2588899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678         208 EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAA  283 (297)
Q Consensus       208 ~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~  283 (297)
                      +++..++.+.....+               .+.-.|++++..|+|    +.+.++..|++++.||++.++.+|+++|++.
T Consensus        92 ~~i~~~~~~~~~~~~---------------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~  156 (401)
T PRK10874         92 ESINLVAQSYARPRL---------------QPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPEL  156 (401)
T ss_pred             HHHHHHHHHhhhccC---------------CCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHh
Confidence            998777655311000               112257788999976    4567788899999999999999999999999


Q ss_pred             HHH
Q psy1678         284 IEE  286 (297)
Q Consensus       284 i~~  286 (297)
                      |.+
T Consensus       157 i~~  159 (401)
T PRK10874        157 ITP  159 (401)
T ss_pred             cCc
Confidence            864

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=98.02  E-value=6.7e-05  Score=70.33  Aligned_cols=83  Identities=16%  Similarity=0.146  Sum_probs=66.0

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      ..+.+++++|.+           ..++|+|||+++..++.+..    .               +.-.|+++..+|++..+
T Consensus        49 l~~~la~~~g~~-----------~i~~~~g~t~al~~~l~~~~----~---------------~gd~Vl~~~~~~~~~~~   98 (361)
T cd06452          49 FHHDLAEFLGMD-----------EARVTPGAREGKFAVMHSLC----E---------------KGDWVVVDGLAHYTSYV   98 (361)
T ss_pred             HHHHHHHHcCCc-----------eEEEeCCHHHHHHHHHHHhc----C---------------CCCEEEEcCCcchHHHH
Confidence            445678888983           37899999999988776531    1               11246778899999999


Q ss_pred             HHHhcCCceEEeeCCCCC--CcCHHHHHHHHHHHH
Q psy1678         256 AGLLGGVTIRGLPADDSY--KLRGDALEAAIEEDL  288 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~~~--~md~~~L~~~i~~~~  288 (297)
                      ++...|++++.||+|.++  .+|++.|++++++..
T Consensus        99 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~  133 (361)
T cd06452          99 AAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVK  133 (361)
T ss_pred             HHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHh
Confidence            999999999999998754  999999999997643

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>KOG1368|consensus

Probab=97.99  E-value=1.5e-05  Score=71.57  Aligned_cols=103  Identities=17%  Similarity=0.205  Sum_probs=79.7

Q ss_pred             HHHHhccccc--cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhh
Q psy1678         151 ILSDSIACIG--FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEA  228 (297)
Q Consensus       151 ~l~~~lN~n~--~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~  228 (297)
                      |-..++|...  ..|..-|-+..+|++    +|+|+|-.           .|.|++.||++|+.|+++.-++        
T Consensus        38 Mr~am~eA~vgDdVyGeD~tt~rLE~~----vA~l~GKE-----------AgLFv~SGTmgNllaIm~Hc~~--------   94 (384)
T KOG1368|consen   38 MRRAMAEASVGDDVYGEDPTTNRLEQR----VAELFGKE-----------AGLFVPSGTMGNLLAIMVHCHQ--------   94 (384)
T ss_pred             HHHHHhhcccCcccccCCccHHHHHHH----HHHHhCcc-----------ceeeecccccccHHHHHHHhcC--------
Confidence            3344444433  357778899999985    47888875           3999999999999999986442        


Q ss_pred             CCCCCCcCCCCceEEEecCCCcchHHHHHH---hcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         229 HPDWKDSDIIANLVGYCSDQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       229 ~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~---~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                                +.-.|+|.+.+|--...++.   +.|+.++.|...++|.||.++++++|+.
T Consensus        95 ----------rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~  145 (384)
T KOG1368|consen   95 ----------RGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRV  145 (384)
T ss_pred             ----------CCceEEeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcC
Confidence                      23468899999977777654   4577899999999999999999999974

>PLN02721 threonine aldolase

Probab=97.97  E-value=2.9e-05  Score=72.07  Aligned_cols=91  Identities=21%  Similarity=0.242  Sum_probs=68.3

Q ss_pred             ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678         164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG  243 (297)
Q Consensus       164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i  243 (297)
                      ..+|....+|..    +++++|.+           .+++|++||++|+.++.+..+.                  +.-.|
T Consensus        37 ~~~~~~~~l~~~----la~~~~~~-----------~~~~~~~Gs~a~~~~l~~~~~~------------------~gd~V   83 (353)
T PLN02721         37 GYDPTALRLEEE----MAKIFGKE-----------AALFVPSGTMGNLISVLVHCDV------------------RGSEV   83 (353)
T ss_pred             CCCHHHHHHHHH----HHHHhCCc-----------eeEEecCccHHHHHHHHHHccC------------------CCCeE
Confidence            335555666664    56666764           2788999999998777764210                  11247


Q ss_pred             EecCCCcchHHH---HHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         244 YCSDQAHSSVER---AGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       244 ~~s~~aH~Si~K---aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      ++++.+|+++.+   .+...|++++.||.|++|.+|+++|++.|++.
T Consensus        84 l~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~  130 (353)
T PLN02721         84 ILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPK  130 (353)
T ss_pred             EEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhc
Confidence            788999999988   46778999999999999999999999999753

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=9.1e-05  Score=70.86  Aligned_cols=129  Identities=19%  Similarity=0.138  Sum_probs=91.5

Q ss_pred             cccccCCCCCCHHHHHHHHHHHhc---ccccc--ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678         133 KFHAYFPTANSYPAIVADILSDSI---ACIGF--TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS  207 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl~d~l~~~l---N~n~~--~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT  207 (297)
                      .|+.+..++..+ ..+.+.+..++   |.|.+  .+..+..++....++...+++++|.++.        ..-+||+|.|
T Consensus        24 vylD~aa~~~~p-~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~--------~eIvft~~tT   94 (405)
T COG0520          24 VYLDNAATSQKP-QAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSS--------DEIVFTRGTT   94 (405)
T ss_pred             EEecCcccccCC-HHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCC--------CeEEEeCChh
Confidence            466666555533 44455555543   44433  3444555677888899999999999852        2699999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH----HHHHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678         208 EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAA  283 (297)
Q Consensus       208 ~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si----~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~  283 (297)
                      ++..+...+.... +               .+.-.|++|+..|.|.    ...++-.|+.|+.||++++|.++.++|++.
T Consensus        95 ~aln~va~~l~~~-~---------------~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~  158 (405)
T COG0520          95 EALNLVARGLGRS-L---------------KPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKL  158 (405)
T ss_pred             HHHHHHHHHhhhh-h---------------cCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHh
Confidence            9987766653221 1               1224688899999875    456666799999999999999999999996


Q ss_pred             HHH
Q psy1678         284 IEE  286 (297)
Q Consensus       284 i~~  286 (297)
                      |.+
T Consensus       159 i~~  161 (405)
T COG0520         159 ITP  161 (405)
T ss_pred             cCC
Confidence            654

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=97.88  E-value=0.00012  Score=68.78  Aligned_cols=99  Identities=20%  Similarity=0.150  Sum_probs=74.4

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      +..+....++=+++.+-+++++|.+++.        .-+||+|+|+++-.++...+... .               +.-.
T Consensus        35 ~~~~~~~~~~~~~~r~~la~~lg~~~~~--------~v~~~~~~t~a~~~~~~~l~~~~-~---------------~g~~   90 (371)
T PF00266_consen   35 SHRSREFAEILEEAREALAKLLGAPPDE--------EVVFTSNGTEALNAVASSLLNPL-K---------------PGDE   90 (371)
T ss_dssp             STTSHHHHHHHHHHHHHHHHHHTSSTTE--------EEEEESSHHHHHHHHHHHHHHHG-T---------------TTCE
T ss_pred             cchhhhhhHHHHHHHHHHHHhcCCcccc--------ccccccccchhhhhhhhcccccc-c---------------cccc
Confidence            3334434444456889999999998721        47899999998888887765431 1               1225


Q ss_pred             EEecCCCcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       243 i~~s~~aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      |+++...|+|..    ..+...|++|+.||.+.++.+|+++++++|.
T Consensus        91 vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~  137 (371)
T PF00266_consen   91 VLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALN  137 (371)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHH
T ss_pred             cccccccccccccccccccccchhhhccccccccchhhhhhhhhhhc
Confidence            777889999988    3444678999999999999999999999995

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=97.84  E-value=0.00015  Score=68.11  Aligned_cols=90  Identities=20%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      ...-.++.+++++++|.++.        ...+||+|||+++..++.+.    ..               +.-.|+++..+
T Consensus        43 ~~~~~~~~~~la~~~~~~~~--------~~v~~~~g~t~al~~~~~~~----~~---------------~gd~vl~~~~~   95 (376)
T TIGR01977        43 SREVEETRQLLAKLFNAPSS--------AHVVFTNNATTALNIALKGL----LK---------------EGDHVITTPME   95 (376)
T ss_pred             HHHHHHHHHHHHHHhCcCCC--------CeEEEeCCHHHHHHHHHHhc----cC---------------CCCEEEECcch
Confidence            34555688899999998642        14889999999988766541    11               11256778889


Q ss_pred             cchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         250 HSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       250 H~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      |+++.    +.++..|++++.|++++++.+|+++|++.+++
T Consensus        96 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~  136 (376)
T TIGR01977        96 HNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKT  136 (376)
T ss_pred             hhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCC
Confidence            98865    45566799999999999999999999998854

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=97.82  E-value=0.00068  Score=61.88  Aligned_cols=83  Identities=12%  Similarity=0.065  Sum_probs=63.9

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      +.-+.+++++|.+.          .-++|+|+|++|..++.+..    .               +.-.|+++..+|.|+.
T Consensus        63 ~~~~~~A~~~ga~~----------~~~~~~Gst~a~~~~l~al~----~---------------~gd~Vlv~~~~h~s~~  113 (294)
T cd00615          63 EAQELAARAFGAKH----------TFFLVNGTSSSNKAVILAVC----G---------------PGDKILIDRNCHKSVI  113 (294)
T ss_pred             HHHHHHHHHhCCCC----------EEEEcCcHHHHHHHHHHHcC----C---------------CCCEEEEeCCchHHHH
Confidence            45567889999754          24459999999988877641    1               1225778889999999


Q ss_pred             HHHHhcCCceEEeeCCCC------CCcCHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDS------YKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~------~~md~~~L~~~i~~  286 (297)
                      .++.+.|..++.|+++.+      +.+|++.|+++|++
T Consensus       114 ~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~  151 (294)
T cd00615         114 NGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIE  151 (294)
T ss_pred             HHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHh
Confidence            999999999988887532      48999999999975

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=97.80  E-value=0.00037  Score=65.67  Aligned_cols=84  Identities=18%  Similarity=0.200  Sum_probs=66.6

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      +..+.+++++|.++           ..+++||+++|..++.+..    .               +.-.|+++...|+|+.
T Consensus        55 ~~~e~lA~~~g~~~-----------~~i~~g~~~a~~~~~~~l~----~---------------~gd~Vl~~~~~h~s~~  104 (370)
T TIGR02539        55 DFLEDLAEFLGMDE-----------ARVTHGAREGKFAVMHALC----K---------------EGDWVVLDGLAHYTSY  104 (370)
T ss_pred             HHHHHHHHHhCCCc-----------eEEECChHHHHHHHHHHhh----C---------------CCCEEEECCcccHHHH
Confidence            34566899999974           6678999999987765531    1               1124677889999999


Q ss_pred             HHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~~~  288 (297)
                      .+++..|.+++.+|.+  +++.+|+++|+++|++..
T Consensus       105 ~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~  140 (370)
T TIGR02539       105 VAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVE  140 (370)
T ss_pred             HHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhh
Confidence            9999999999999987  468999999999997643

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=97.79  E-value=0.00022  Score=65.49  Aligned_cols=104  Identities=21%  Similarity=0.214  Sum_probs=81.2

Q ss_pred             HhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCC
Q psy1678         154 DSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWK  233 (297)
Q Consensus       154 ~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~  233 (297)
                      ...+.+...+...+....+|..+.+++...+|.+...       ...++|+|||+++..++.+...              
T Consensus        23 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-------~~~~~~~~~t~a~~~~~~~~~~--------------   81 (350)
T cd00609          23 AALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPP-------EEIVVTNGAQEALSLLLRALLN--------------   81 (350)
T ss_pred             HhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCc-------ceEEEecCcHHHHHHHHHHhCC--------------
Confidence            4566666667777888899999999999998864321       3588999999999887776521              


Q ss_pred             CcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCH--HHHHHH
Q psy1678         234 DSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRG--DALEAA  283 (297)
Q Consensus       234 ~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~--~~L~~~  283 (297)
                           +.-+|+++..+|+++.+++..+|++++.||+++++.++.  +.++..
T Consensus        82 -----~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  128 (350)
T cd00609          82 -----PGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAA  128 (350)
T ss_pred             -----CCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhh
Confidence                 112578899999999999999999999999998888876  454443

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=97.78  E-value=0.00014  Score=67.06  Aligned_cols=81  Identities=22%  Similarity=0.329  Sum_probs=63.3

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+++++++| ++          ..++|+|||++|..++.+...                   +.-.|+++..+|+++.
T Consensus        36 ~l~~~~a~~~g-~~----------~~~~~~~gt~a~~~~~~~l~~-------------------~gd~v~~~~~~~~~~~   85 (338)
T cd06502          36 KLEARAAELFG-KE----------AALFVPSGTAANQLALAAHTQ-------------------PGGSVICHETAHIYTD   85 (338)
T ss_pred             HHHHHHHHHhC-CC----------eEEEecCchHHHHHHHHHhcC-------------------CCCeEEEecCcceeee
Confidence            45678899999 43          599999999999887765311                   1124668899999887


Q ss_pred             HH---HHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 RA---GLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Ka---a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++   +.+.|++++.||.+. +.+|+++|+++|++
T Consensus        86 ~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~  119 (338)
T cd06502          86 EAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRP  119 (338)
T ss_pred             cCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhc
Confidence            63   556899999999876 88999999999975

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK08361 aspartate aminotransferase; Provisional

Probab=97.78  E-value=0.0003  Score=66.71  Aligned_cols=115  Identities=12%  Similarity=0.114  Sum_probs=82.6

Q ss_pred             HHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHH
Q psy1678         146 AIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRV  225 (297)
Q Consensus       146 svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~  225 (297)
                      ..+.+.+...+......|...+....+++.+.+|+.+.+|.+-+       ...-++|+|||+++..++.+..    .  
T Consensus        49 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~----~--  115 (391)
T PRK08361         49 KNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVD-------VDNVIVTAGAYEATYLAFESLL----E--  115 (391)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-------cccEEEeCChHHHHHHHHHHhc----C--
Confidence            33455555555443334544556778888899999888775321       1258899999999888776531    1  


Q ss_pred             HhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         226 KEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       226 ~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                                   +.-.|++.+-+|.++..++...|++++.||+|+  ++.+|+++|++.+++
T Consensus       116 -------------~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~  165 (391)
T PRK08361        116 -------------EGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITK  165 (391)
T ss_pred             -------------CCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc
Confidence                         112466788899999999999999999999986  458999999998864

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=97.75  E-value=0.00029  Score=67.58  Aligned_cols=131  Identities=14%  Similarity=0.030  Sum_probs=83.3

Q ss_pred             ccccccCCCCCCHHHHHHHHHHHhcc---cccccc--ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCCh
Q psy1678         132 PKFHAYFPTANSYPAIVADILSDSIA---CIGFTW--IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTA  206 (297)
Q Consensus       132 p~~~g~~~s~~~~~svl~d~l~~~lN---~n~~~~--~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGG  206 (297)
                      ..|+++-.+++.+..++ +.+...+.   .|...+  ..+.....+-.++.+.+++++|.++.        ..-+||+|+
T Consensus        33 ~iyLd~a~~~~~p~~v~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~--------~~v~~t~g~  103 (424)
T PLN02855         33 LVYLDNAATSQKPAAVL-DALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTS--------REIVFTRNA  103 (424)
T ss_pred             eEEeeCccccCCCHHHH-HHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCC--------CEEEEeCCH
Confidence            35787765555555544 33433332   222111  11222333344678899999998531        158999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH----HHHHHhcCCceEEeeCCCCCCcCHHHHHH
Q psy1678         207 SEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEA  282 (297)
Q Consensus       207 T~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si----~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~  282 (297)
                      |+++...+.+.....+               .+.-.|+++...|+|.    ...++..|+.++.||++.++.+|+++|++
T Consensus       104 t~al~~i~~~~~~~~~---------------~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~  168 (424)
T PLN02855        104 TEAINLVAYTWGLANL---------------KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKE  168 (424)
T ss_pred             HHHHHHHHHHhhhhcC---------------CCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHH
Confidence            9998776653210000               1122577888888874    45567789999999999888999999999


Q ss_pred             HHHH
Q psy1678         283 AIEE  286 (297)
Q Consensus       283 ~i~~  286 (297)
                      .|.+
T Consensus       169 ~i~~  172 (424)
T PLN02855        169 LLSE  172 (424)
T ss_pred             Hhcc
Confidence            9864

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=97.72  E-value=0.00011  Score=67.82  Aligned_cols=92  Identities=18%  Similarity=0.211  Sum_probs=70.6

Q ss_pred             cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678         161 FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN  240 (297)
Q Consensus       161 ~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~  240 (297)
                      ..|...|....+|.    ++++++|. .          ..+|+++||++|.+||.+.-+                   +.
T Consensus        29 ~~YG~D~~~~~~e~----~~ae~~g~-~----------a~~Fv~sGT~aN~lal~~~~~-------------------~~   74 (342)
T COG2008          29 DVYGEDPTTNALEQ----RIAELFGK-E----------AALFVPSGTQANQLALAAHCQ-------------------PG   74 (342)
T ss_pred             CCCCCCHHHHHHHH----HHHHHhCC-c----------eEEEecCccHHHHHHHHHhcC-------------------CC
Confidence            45777888877776    78999999 4          499999999999999988521                   12


Q ss_pred             eEEEecCCCcchHHHHHHh--cC-CceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         241 LVGYCSDQAHSSVERAGLL--GG-VTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       241 ~~i~~s~~aH~Si~Kaa~~--lg-~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      -.++|-+++|...+.+..+  ++ ...+.+...++|+|+++.+++.|..
T Consensus        75 ~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~  123 (342)
T COG2008          75 ESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRP  123 (342)
T ss_pred             CeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcC
Confidence            2578999999999986543  33 3444444457999999999999975

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=97.69  E-value=0.00047  Score=65.30  Aligned_cols=128  Identities=12%  Similarity=0.073  Sum_probs=82.0

Q ss_pred             cccccCCCCCCHHHHHHHHHHHhccc---c-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhH
Q psy1678         133 KFHAYFPTANSYPAIVADILSDSIAC---I-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASE  208 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl~d~l~~~lN~---n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~  208 (297)
                      .|+.+-..++.+..++. .+...+..   + ...+..+.....+-.++.+.+++++|.++.         .-++|+|+|+
T Consensus        19 ~yl~~~~~~~~p~~v~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~---------~v~~~~~~t~   88 (397)
T TIGR01976        19 VFFDNPAGTQIPQSVAD-AVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPP---------EVVFGANATS   88 (397)
T ss_pred             EEecCCccCCCCHHHHH-HHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCC---------eEEEeCCHHH
Confidence            46666544444455443 33233221   1 112322233344556788999999998753         4788999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH----HHHHhcCCceEEeeCCC-CCCcCHHHHHHH
Q psy1678         209 ATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE----RAGLLGGVTIRGLPADD-SYKLRGDALEAA  283 (297)
Q Consensus       209 anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~----Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~  283 (297)
                      ++...+.+.... .               .+.-.|+++...|+|..    ++++..|++++.+++++ ++.+|++.|++.
T Consensus        89 ~l~~~~~~~~~~-~---------------~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~  152 (397)
T TIGR01976        89 LTFLLSRAISRR-W---------------GPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASL  152 (397)
T ss_pred             HHHHHHHHHHhc-C---------------CCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHh
Confidence            876555443211 0               11225777888998864    56777899999999986 799999999999


Q ss_pred             HHH
Q psy1678         284 IEE  286 (297)
Q Consensus       284 i~~  286 (297)
                      |.+
T Consensus       153 i~~  155 (397)
T TIGR01976       153 LSP  155 (397)
T ss_pred             cCC
Confidence            864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=97.63  E-value=0.00029  Score=65.37  Aligned_cols=89  Identities=21%  Similarity=0.154  Sum_probs=70.1

Q ss_pred             ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678         164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG  243 (297)
Q Consensus       164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i  243 (297)
                      ...|...++|+    .+++++|.+           ..++|++||+++..++.+.+-                  .+.-.|
T Consensus        15 ~~~~~~~~~~~----~la~~~~~~-----------~~~~~~sgt~al~~~l~~l~~------------------~~gd~v   61 (352)
T cd00616          15 TLGPKVREFEK----AFAEYLGVK-----------YAVAVSSGTAALHLALRALGI------------------GPGDEV   61 (352)
T ss_pred             cCCHHHHHHHH----HHHHHhCCC-----------eEEEECCHHHHHHHHHHHcCC------------------CCCCEE
Confidence            34555566665    677778864           378999999999888876521                  012257


Q ss_pred             EecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHH
Q psy1678         244 YCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE  285 (297)
Q Consensus       244 ~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~  285 (297)
                      +++..+|.+...++...|++++.+++++ ++.+|++.|++.++
T Consensus        62 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~  104 (352)
T cd00616          62 IVPSFTFVATANAILLLGATPVFVDIDPDTYNIDPELIEAAIT  104 (352)
T ss_pred             EeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcCHHHHHHhcC
Confidence            7899999999999999999999999997 89999999999884

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK09082 methionine aminotransferase; Validated

Probab=97.62  E-value=0.00067  Score=64.24  Aligned_cols=113  Identities=14%  Similarity=0.091  Sum_probs=81.6

Q ss_pred             HHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhh
Q psy1678         149 ADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEA  228 (297)
Q Consensus       149 ~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~  228 (297)
                      -+.+...+......|........++..+.+|+.+++|.+...      ....++|+|||+++..++.+..    .     
T Consensus        49 ~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~------~~~i~~t~G~~~al~~~~~~~~----~-----  113 (386)
T PRK09082         49 VEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDA------DSEITVTAGATEALFAAILALV----R-----  113 (386)
T ss_pred             HHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC------CCcEEEeCCHHHHHHHHHHHHc----C-----
Confidence            344444443322334444556788889999999999875310      0148899999999988776531    1     


Q ss_pred             CCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC-CCCCcCHHHHHHHHHH
Q psy1678         229 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEE  286 (297)
Q Consensus       229 ~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d-~~~~md~~~L~~~i~~  286 (297)
                                +.-.|+++.-+|.++..+++..|.+++.+|++ +++.+|+++|++.++.
T Consensus       114 ----------~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~  162 (386)
T PRK09082        114 ----------PGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAISP  162 (386)
T ss_pred             ----------CCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcCc
Confidence                      11246678889999999999999999999997 4689999999998853

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=97.59  E-value=0.00098  Score=61.75  Aligned_cols=91  Identities=11%  Similarity=0.006  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH  250 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH  250 (297)
                      .+-..+.+.+++++|.++..       ...++|+|||+++..++.....                  .+.-+++.+...+
T Consensus        31 ~~~~~~~~~la~~~~~~~~~-------~~i~~~~~gt~~l~~~~~~~~~------------------~~~~vi~~~~~~~   85 (355)
T TIGR03301        31 DVTDQVRDRLLALAGGDDNH-------TCVLLQGSGTFAVEATIGSLVP------------------RDGKLLVLINGAY   85 (355)
T ss_pred             HHHHHHHHHHHHHhcCCCCC-------cEEEEeCCcHHHHHHHHHhccC------------------CCCeEEEECCCch
Confidence            44556889999999998631       1466899999999887766421                  1122444444444


Q ss_pred             ch-HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         251 SS-VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       251 ~S-i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .+ +..++...|++++.|+.++++.+|+++|++.|++
T Consensus        86 ~~~~~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~  122 (355)
T TIGR03301        86 GERLAKICEYLGIPHTDLNFSEYEPPDLNRIEEALAA  122 (355)
T ss_pred             hhHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHHh
Confidence            33 5678888999999999998899999999999875

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=97.53  E-value=0.00092  Score=62.60  Aligned_cols=93  Identities=10%  Similarity=0.005  Sum_probs=69.2

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ...+-.++.+.+++++|.+++.       -.-+||+|||+++..++.+.-.                  .+.-+++.+..
T Consensus        33 ~~~~~~~~r~~la~l~~~~~~~-------~~i~~t~~~t~al~~~~~~l~~------------------~~~~vlv~~~~   87 (363)
T TIGR02326        33 YNIVVEQIRQQLLALATAEEGY-------TSVLLQGSGTFAVEAVIGSAVP------------------KDGKLLVVING   87 (363)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCc-------eEEEEcCCCHHHHHHHHHhcCC------------------CCCeEEEEeCC
Confidence            3334446889999999997521       1378999999999887765311                  12234555666


Q ss_pred             Ccch-HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         249 AHSS-VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       249 aH~S-i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .|.+ +.+.+...|++++.||+++++.+|++.|++.|.+
T Consensus        88 ~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  126 (363)
T TIGR02326        88 AYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAA  126 (363)
T ss_pred             hhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhh
Confidence            6666 3677888999999999999999999999999875

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK07179 hypothetical protein; Provisional

Probab=97.52  E-value=0.00098  Score=63.58  Aligned_cols=119  Identities=13%  Similarity=0.021  Sum_probs=76.1

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHhccccc-cccc--cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcC
Q psy1678         128 HWHSPKFHAYFPTANSYPAIVADILSDSIACIG-FTWI--ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQG  204 (297)
Q Consensus       128 ~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~-~~~~--~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~ts  204 (297)
                      .+.+-.|+|... -+.....+.+.+....+... ..+-  ..+...++|+    .+++++|.+.           .+||+
T Consensus        58 ~~~~~~YL~l~~-~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~----~la~~~g~~~-----------~~~~~  121 (407)
T PRK07179         58 ILQSNDYLNLSG-HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEK----KLAAFTGFES-----------CLLCQ  121 (407)
T ss_pred             EeecCCccCCCC-CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHH----HHHHHhCCCc-----------EEEEC
Confidence            445556777663 23334444455544322211 1111  1234556664    6777788753           68999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHH
Q psy1678         205 TASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAI  284 (297)
Q Consensus       205 GGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i  284 (297)
                      ||++||..++.+...                   +.-.++++..+|+|+..++...|..++.++     ..|+++|++.|
T Consensus       122 sG~~An~~~l~~l~~-------------------~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~-----~~d~~~l~~~l  177 (407)
T PRK07179        122 SGWAANVGLLQTIAD-------------------PNTPVYIDFFAHMSLWEGVRAAGAQAHPFR-----HNDVDHLRRQI  177 (407)
T ss_pred             CHHHHHHHHHHHhCC-------------------CCCEEEEECCcCHHHHHHHHHCCCeEEEec-----CCCHHHHHHHH
Confidence            999999988876321                   112467789999999999988888766543     35999999988


Q ss_pred             HH
Q psy1678         285 EE  286 (297)
Q Consensus       285 ~~  286 (297)
                      ++
T Consensus       178 ~~  179 (407)
T PRK07179        178 ER  179 (407)
T ss_pred             Hh
Confidence            64

>PRK06108 aspartate aminotransferase; Provisional

Probab=97.51  E-value=0.0015  Score=61.52  Aligned_cols=113  Identities=14%  Similarity=0.117  Sum_probs=79.3

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +.+.+...+......|...+....+.+.+.+|+.+.+|.+-+       ...-++|+||++++..++.+..+        
T Consensus        42 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~-------~~~i~~t~g~~~al~~~~~~l~~--------  106 (382)
T PRK06108         42 IRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATP-------PERIAVTSSGVQALMLAAQALVG--------  106 (382)
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcC-------cceEEEeCChHHHHHHHHHHhcC--------
Confidence            344444444333233555556678888899999999884321       02578899999998776665311        


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC---CCCcCHHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD---SYKLRGDALEAAIEE  286 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~---~~~md~~~L~~~i~~  286 (297)
                                 +.-.|++..-+|..+..++..+|++++.||.+.   ++.+|+++|++.+..
T Consensus       107 -----------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~  157 (382)
T PRK06108        107 -----------PGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITP  157 (382)
T ss_pred             -----------CCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCc
Confidence                       111466678899999999999999999999974   467999999988753

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=97.48  E-value=0.00085  Score=63.14  Aligned_cols=104  Identities=16%  Similarity=0.120  Sum_probs=74.9

Q ss_pred             HHHHHhcccccccccc-CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhh
Q psy1678         150 DILSDSIACIGFTWIA-SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEA  228 (297)
Q Consensus       150 d~l~~~lN~n~~~~~~-~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~  228 (297)
                      +.+...+...  .+.. +|...++|++    +++.+|..           .++.|+.||.|+..||.+..   +      
T Consensus         9 ~~v~~~l~s~--~~~~~g~~~~~fE~~----~a~~~g~~-----------~~~~~~sgt~Al~~al~~l~---~------   62 (363)
T PF01041_consen    9 DAVLEVLRSG--WLSTYGPYVEEFEKE----FAEYFGVK-----------YAVAVSSGTSALHLALRALG---L------   62 (363)
T ss_dssp             HHHHHHHHHT--CCSSSSHHHHHHHHH----HHHHHTSS-----------EEEEESSHHHHHHHHHHHTT---G------
T ss_pred             HHHHHHHHhC--CccCCCHHHHHHHHH----HHHHhCCC-----------eEEEeCChhHHHHHHHHhcC---C------
Confidence            3444444443  2233 6788889984    56666754           48899999999999988731   0      


Q ss_pred             CCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC-CCCCcCHHHHHHHHHHHH
Q psy1678         229 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       229 ~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d-~~~~md~~~L~~~i~~~~  288 (297)
                               .+.-.|++|..+..+...|...+|+.++-|++| +++.||++.|+++|.+.+
T Consensus        63 ---------~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t  114 (363)
T PF01041_consen   63 ---------GPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKT  114 (363)
T ss_dssp             ---------GTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTE
T ss_pred             ---------CcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCc
Confidence                     122367789999999999999999999999999 799999999999987643

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=97.44  E-value=0.0014  Score=62.15  Aligned_cols=89  Identities=17%  Similarity=0.128  Sum_probs=68.7

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      .+|...++|+    .+++++|.+           ..++|+|||+++..++.+..   +.               +.-.|+
T Consensus        31 ~g~~~~~le~----~la~~~g~~-----------~~v~~~sgt~al~lal~al~---~~---------------~Gd~Vi   77 (379)
T PRK11658         31 TGPKNQALEQ----AFCQLTGNQ-----------HAIAVSSATAGMHITLMALG---IG---------------PGDEVI   77 (379)
T ss_pred             CCHhHHHHHH----HHHHHhCCC-----------eEEEECCHHHHHHHHHHHcC---CC---------------CCCEEE
Confidence            3677777777    456677764           27889999999988886631   10               112577


Q ss_pred             ecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      ++..+|.+...++...|+.++.|++|. ++.+|++.|+++|.+
T Consensus        78 v~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~  120 (379)
T PRK11658         78 TPSLTWVSTLNMIVLLGATPVMVDVDRDTLMVTPEAIEAAITP  120 (379)
T ss_pred             ECCCcHHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhccc
Confidence            888999999999999999999999986 457999999999864

>PLN02409 serine--glyoxylate aminotransaminase

Probab=97.39  E-value=0.0016  Score=62.15  Aligned_cols=95  Identities=14%  Similarity=0.007  Sum_probs=71.5

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      ++....+=+++.+++++++|.+..        ..-++|+|||.++..++...    +.               +.-.|++
T Consensus        37 ~~~~~~~~~~~~~~l~~~~g~~~~--------~~vi~~~~gt~a~~~a~~~~----~~---------------~Gd~Vlv   89 (401)
T PLN02409         37 SPAFPALTKELLEDVKYIFKTKSG--------TPFIFPTTGTGAWESALTNT----LS---------------PGDKVVS   89 (401)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCC--------CEEEEeCCcHHHHHHHHHhc----CC---------------CCCEEEE
Confidence            566666777899999999998642        24788999998876666542    11               1114566


Q ss_pred             cCCCcchH--HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         246 SDQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       246 s~~aH~Si--~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      ++..|++.  ...++..|++++.|+.+..+.+|+++|+++|+++
T Consensus        90 ~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~  133 (401)
T PLN02409         90 FRIGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQD  133 (401)
T ss_pred             eCCCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhC
Confidence            77889776  4677888999999999877779999999999863

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=97.37  E-value=0.002  Score=61.13  Aligned_cols=88  Identities=17%  Similarity=0.153  Sum_probs=67.2

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      +|...++|    +++++.+|.+           ..++|+|||++...++.+..   .               .+.-.|++
T Consensus        30 g~~~~~~e----~~la~~~g~~-----------~~v~~~sgt~aL~~~l~al~---~---------------~pGd~Viv   76 (376)
T TIGR02379        30 GPFSRRCE----TWLENRTGTK-----------KALLTPSCTAALEMAALLLD---I---------------QPGDEVIM   76 (376)
T ss_pred             cHHHHHHH----HHHHHHhCCC-----------eEEEeCCHHHHHHHHHHHcC---C---------------CCcCEEEE
Confidence            45555566    4777777764           38899999999877766530   1               11225778


Q ss_pred             cCCCcchHHHHHHhcCCceEEeeCCCC-CCcCHHHHHHHHHH
Q psy1678         246 SDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~Si~Kaa~~lg~~v~~Vp~d~~-~~md~~~L~~~i~~  286 (297)
                      +..+|.+...++...|.+++.|++|++ +.+|+++|+++|..
T Consensus        77 ~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~  118 (376)
T TIGR02379        77 PSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDETLIESAITH  118 (376)
T ss_pred             CCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc
Confidence            889999999999999999999999975 68999999998864

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK08960 hypothetical protein; Provisional

Probab=97.37  E-value=0.003  Score=59.75  Aligned_cols=113  Identities=12%  Similarity=0.028  Sum_probs=80.1

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +.+.+...+..+...|...+....+.+.+.+|+.+..|++-+.       ..-++|+|+++++..++.+-    ..    
T Consensus        50 v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------~~i~it~G~~~al~~~~~~~----~~----  114 (387)
T PRK08960         50 IVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDP-------ERILVTPGGSGALLLASSLL----VD----  114 (387)
T ss_pred             HHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCCh-------hhEEEccCcHHHHHHHHHHh----cC----
Confidence            3444444444333345555566778888888888877764221       25889999999987766542    11    


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC--CCcCHHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEE  286 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~--~~md~~~L~~~i~~  286 (297)
                                 +.-.|++++-+|++....+...|.+++.||+|++  +.+|++.|++.+++
T Consensus       115 -----------~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~  164 (387)
T PRK08960        115 -----------PGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNA  164 (387)
T ss_pred             -----------CCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCc
Confidence                       1225677899999999999999999999999764  58999999988764

>PRK05764 aspartate aminotransferase; Provisional

Probab=97.33  E-value=0.0047  Score=58.40  Aligned_cols=114  Identities=16%  Similarity=0.097  Sum_probs=80.6

Q ss_pred             HHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         147 IVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       147 vl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      .+.+.+...++.....|........+++.+.+|+.+..|..-.       ...-++|+|+|+++..++.+..+       
T Consensus        48 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~-------~~~i~~~~g~~~a~~~~~~~~~~-------  113 (393)
T PRK05764         48 HIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYD-------PSQVIVTTGAKQALYNAFMALLD-------  113 (393)
T ss_pred             HHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCC-------HHHEEEeCCcHHHHHHHHHHhcC-------
Confidence            3455555555443334544555677888888888777664211       02478999999998887665411       


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                                  +.-.|++++-.|..+..+++..|.+++.||+++  .+.+|++.|++++++
T Consensus       114 ------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  163 (393)
T PRK05764        114 ------------PGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITP  163 (393)
T ss_pred             ------------CCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhCc
Confidence                        112467788899999999999999999999974  568999999998853

>PLN02656 tyrosine transaminase

Probab=97.32  E-value=0.0084  Score=57.30  Aligned_cols=114  Identities=12%  Similarity=0.093  Sum_probs=79.6

Q ss_pred             HHHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHH
Q psy1678         147 IVADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRV  225 (297)
Q Consensus       147 vl~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~  225 (297)
                      .+.+.+..++..+ ...|........+.+.+.+|+....|++-+       ....++|+|+|+++..++.+..    .  
T Consensus        52 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~----~--  118 (409)
T PLN02656         52 VAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLS-------LDDVFITSGCTQAIDVALSMLA----R--  118 (409)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC-------cccEEEeCChHHHHHHHHHHHh----C--
Confidence            4444555555443 234544556677888888999887776421       1258899999999877776531    1  


Q ss_pred             HhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         226 KEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       226 ~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                                   +.-.|++++-+|+....++.+.|++++.+|+++  .+.+|+++|++.+++
T Consensus       119 -------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~  168 (409)
T PLN02656        119 -------------PGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQ  168 (409)
T ss_pred             -------------CCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhcc
Confidence                         111466778888888888999999999999963  468999999987753

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=97.31  E-value=0.0045  Score=59.21  Aligned_cols=122  Identities=13%  Similarity=0.102  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHH
Q psy1678         145 PAIVADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQ  223 (297)
Q Consensus       145 ~svl~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~  223 (297)
                      +..+.+.+...++.+ ...|....+...+-+.+.+|+.+.+|.+.... .......-++|+|+++++..++.+..+    
T Consensus        52 ~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~-~~~~~~~i~it~G~~~al~~~~~~~~~----  126 (412)
T PTZ00433         52 PAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLK-STIKKDNVVLCSGVSHAILMALTALCD----  126 (412)
T ss_pred             CHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhcccccccc-CCCChhhEEEeCChHHHHHHHHHHhcC----
Confidence            345556666655542 22343333456777778888887654110000 000012588999999999887775311    


Q ss_pred             HHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                                     +.-.|+++.-++.....++..+|++++.+|+++  ++.+|+++|++.+.+
T Consensus       127 ---------------~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~  176 (412)
T PTZ00433        127 ---------------EGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDD  176 (412)
T ss_pred             ---------------CCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhcc
Confidence                           112466677889999999999999999999964  579999999887754

>PRK05957 aspartate aminotransferase; Provisional

Probab=97.31  E-value=0.0035  Score=59.48  Aligned_cols=114  Identities=18%  Similarity=0.132  Sum_probs=76.9

Q ss_pred             HHHHHHHhcc-ccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIA-CIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       148 l~d~l~~~lN-~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      +.+.+...++ .....|........+-..+.+++++.+|.+-+.      ....++|+|++++...++.+.    +.   
T Consensus        45 ~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~------~~~i~~t~G~~~~l~~~~~~~----~~---  111 (389)
T PRK05957         45 AIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNN------EQAIVVTAGSNMAFMNAILAI----TD---  111 (389)
T ss_pred             HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCeEEEeCChHHHHHHHHHHh----cC---
Confidence            3445544443 222334444445566677889999999974210      024789999999887766543    11   


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                                  +.-.|+++.-.++....+++..|+.++.||.++++.+|+++|++.|++
T Consensus       112 ------------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  159 (389)
T PRK05957        112 ------------PGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAITP  159 (389)
T ss_pred             ------------CCCEEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcCc
Confidence                        112466676677777777788899999999998899999999998864

>PRK06207 aspartate aminotransferase; Provisional

Probab=97.31  E-value=0.0048  Score=58.92  Aligned_cols=100  Identities=11%  Similarity=0.035  Sum_probs=73.4

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|........+-+.+.+|+++.+|.+-+.      ...-++|+|+++++..++.+-    +.               +.-
T Consensus        73 ~Y~~~~G~~~LR~aia~~l~~~~g~~~~~------~~~I~it~Ga~~al~~~~~~l----~~---------------~Gd  127 (405)
T PRK06207         73 AYTEYRGDADIRELLAARLAAFTGAPVDA------ADELIITPGTQGALFLAVAAT----VA---------------RGD  127 (405)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCCEEEeCCcHHHHHHHHHHh----cC---------------CCC
Confidence            34434456678888999999999975210      025889999999887766542    11               112


Q ss_pred             EEEecCCCcchHHHHHHhcCCceEEeeCC-----CCCCcCHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERAGLLGGVTIRGLPAD-----DSYKLRGDALEAAIEE  286 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d-----~~~~md~~~L~~~i~~  286 (297)
                      .|++..-+++.....+..+|.+++.||++     .++.+|++.|++++++
T Consensus       128 ~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~  177 (405)
T PRK06207        128 KVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA  177 (405)
T ss_pred             EEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh
Confidence            45667788889999999999999999986     3689999999998864

>PRK12414 putative aminotransferase; Provisional

Probab=97.28  E-value=0.0046  Score=58.51  Aligned_cols=99  Identities=13%  Similarity=0.108  Sum_probs=72.9

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |....+...+...+.+|+++++|.+-+.      ...-++|+||++++..++.+.    +.               +.-.
T Consensus        62 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~------~~~i~it~g~~~al~~~~~~l----~~---------------~gd~  116 (384)
T PRK12414         62 YAPMAGIAALREALAEKTERLYGARYDP------ASEVTVIASASEGLYAAISAL----VH---------------PGDE  116 (384)
T ss_pred             cCCCCCcHHHHHHHHHHHHHHhCCCCCC------CCcEEEECChHHHHHHHHHHh----cC---------------CCCE
Confidence            3333445678888999999999985210      015889999999887666542    11               1124


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      |++++-+|......++..|.+++.||+++ ++.+|++.|++.+++
T Consensus       117 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~  161 (384)
T PRK12414        117 VIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAITP  161 (384)
T ss_pred             EEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcCc
Confidence            66778889898999999999999999984 678999999988853

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=97.28  E-value=0.004  Score=60.28  Aligned_cols=96  Identities=14%  Similarity=0.138  Sum_probs=70.8

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      +|...++|+    .+++.+|.+           ..++|++||++++.|+.+.......+.   +       ..+.-.|++
T Consensus        62 G~~~~~fe~----~lA~~~g~~-----------~~v~~~sGt~al~~aL~al~~~~~~~~---~-------~~pGd~VIv  116 (438)
T PRK15407         62 GRFNDAFEK----KLAEFLGVR-----------YALLVNSGSSANLLAFSALTSPKLGDR---A-------LKPGDEVIT  116 (438)
T ss_pred             ChhHHHHHH----HHHHHhCCC-----------eEEEECCHHHHHHHHHHHHhhcccccc---C-------CCCCCEEEE
Confidence            455566665    556667764           378899999999999987643222110   0       012235778


Q ss_pred             cCCCcchHHHHHHhcCCceEEeeCC-CCCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~Si~Kaa~~lg~~v~~Vp~d-~~~~md~~~L~~~i~~  286 (297)
                      +..+|.+...+....|..++.|++| +++.+|++.|+++|..
T Consensus       117 ~~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~i~~  158 (438)
T PRK15407        117 VAAGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAAVSP  158 (438)
T ss_pred             CCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHcCc
Confidence            8999999999999999999999998 5789999999998864

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=97.24  E-value=0.0027  Score=60.01  Aligned_cols=83  Identities=17%  Similarity=0.116  Sum_probs=64.6

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      +.-+++++.+|.+           ..++|+|||.++.+++.+.   ..               .+.-.|+++..+|.+..
T Consensus        35 ~~e~~la~~~g~~-----------~~v~~~sgt~al~~~l~~~---~~---------------~~Gd~Viv~~~t~~~~~   85 (375)
T PRK11706         35 RCQQWLEQRFGSA-----------KVLLTPSCTAALEMAALLL---DI---------------QPGDEVIMPSYTFVSTA   85 (375)
T ss_pred             HHHHHHHHHhCCC-----------eEEEECCHHHHHHHHHHHh---CC---------------CCCCEEEECCCCcHHHH
Confidence            3445778888874           3889999999987766543   01               11225778899999999


Q ss_pred             HHHHhcCCceEEeeCCCC-CCcCHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~-~~md~~~L~~~i~~  286 (297)
                      .++...|+.++.+++|++ +.+|+++|+++|.+
T Consensus        86 ~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~  118 (375)
T PRK11706         86 NAFVLRGAKIVFVDIRPDTMNIDETLIEAAITP  118 (375)
T ss_pred             HHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCC
Confidence            999999999999999976 58999999998864

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=97.23  E-value=0.0019  Score=52.67  Aligned_cols=75  Identities=20%  Similarity=0.106  Sum_probs=57.9

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.++++++++.+.         ...+|++|||+++..++.+++..                   +-.++++...|++..
T Consensus         4 ~~~~~l~~~~~~~~---------~~~~~~~~~t~a~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~   55 (170)
T cd01494           4 ELEEKLARLLQPGN---------DKAVFVPSGTGANEAALLALLGP-------------------GDEVIVDANGHGSRY   55 (170)
T ss_pred             HHHHHHHHHcCCCC---------CcEEEeCCcHHHHHHHHHHhCCC-------------------CCEEEEeecccceeh
Confidence            46688999997322         25999999999999999987421                   124777888999998


Q ss_pred             -HHHHhcCCceEEeeCCCCCCcCH
Q psy1678         255 -RAGLLGGVTIRGLPADDSYKLRG  277 (297)
Q Consensus       255 -Kaa~~lg~~v~~Vp~d~~~~md~  277 (297)
                       +.+...|.+++.++.+.++..+.
T Consensus        56 ~~~~~~~g~~~~~v~~~~~~~~~~   79 (170)
T cd01494          56 WVAAELAGAKPVPVPVDDAGYGGL   79 (170)
T ss_pred             hhHHHhcCCEEEEeccCCCCccch
Confidence             88888999999999987654443

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=97.19  E-value=0.0059  Score=57.93  Aligned_cols=95  Identities=20%  Similarity=0.174  Sum_probs=70.6

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      .....+++.+.+|+....|.+-.      ....-++|+|||+++..++.+.    ..              ... .|++.
T Consensus        67 ~g~~~lr~~ia~~~~~~~~~~~~------~~~~i~it~G~~~al~~~~~~~----~~--------------~gd-~vl~~  121 (391)
T PRK07309         67 AGLLELRQAAADFVKEKYNLDYA------PENEILVTIGATEALSASLTAI----LE--------------PGD-KVLLP  121 (391)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCC------CCCcEEEeCChHHHHHHHHHHh----cC--------------CCC-EEEEe
Confidence            34567888899999888776321      0025789999999998876653    11              012 45566


Q ss_pred             CCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         247 DQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       247 ~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      .-++.....+++..|.+++.+|+++ .+.+|++.|++++++
T Consensus       122 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~  162 (391)
T PRK07309        122 APAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILE  162 (391)
T ss_pred             CCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhc
Confidence            7788888999999999999999976 468999999999864

>PLN00175 aminotransferase family protein; Provisional

Probab=97.19  E-value=0.0083  Score=57.51  Aligned_cols=114  Identities=16%  Similarity=0.125  Sum_probs=80.2

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +.+.+...+......|....+...+.+.+.+|+.+..|++-+.      ...-++|+|+++++..++.+.    +.    
T Consensus        72 ~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~------~~~I~vt~G~~~al~~~~~~l----~~----  137 (413)
T PLN00175         72 VKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDP------EKEVTVTSGCTEAIAATILGL----IN----  137 (413)
T ss_pred             HHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCCEEEeCCHHHHHHHHHHHh----CC----
Confidence            4455555554333345555566788888999999888864210      014788999999987766542    11    


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                                 +.-.|++.+-.+.....++...|.+++.||+++ ++.+|+++|++.+..
T Consensus       138 -----------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~  186 (413)
T PLN00175        138 -----------PGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTS  186 (413)
T ss_pred             -----------CCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCc
Confidence                       112466677888888999999999999999984 689999999998854

>PRK07777 aminotransferase; Validated

Probab=97.19  E-value=0.0068  Score=57.33  Aligned_cols=110  Identities=19%  Similarity=0.137  Sum_probs=76.2

Q ss_pred             HHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCC
Q psy1678         152 LSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPD  231 (297)
Q Consensus       152 l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~  231 (297)
                      +...+......|...+...++++.+.+|+.+.+|++.+.      ...-++|+|||+++..++.+.    ..        
T Consensus        46 ~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~------~~~i~~t~G~~~al~~~~~~~----~~--------  107 (387)
T PRK07777         46 AQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDP------DTEVLVTVGATEAIAAAVLGL----VE--------  107 (387)
T ss_pred             HHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCcEEEeCCcHHHHHHHHHHh----cC--------
Confidence            333333333345445566788888889999888875320      014788999999987766532    11        


Q ss_pred             CCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC---CCcCHHHHHHHHHH
Q psy1678         232 WKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS---YKLRGDALEAAIEE  286 (297)
Q Consensus       232 ~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~---~~md~~~L~~~i~~  286 (297)
                             +.-.|++..-.|.+...++...|..++.+|.+++   +.+|++.|++.+.+
T Consensus       108 -------~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~  158 (387)
T PRK07777        108 -------PGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTP  158 (387)
T ss_pred             -------CCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCc
Confidence                   1114556677888888999999999999999754   57999999998754

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=97.17  E-value=0.0077  Score=55.63  Aligned_cols=122  Identities=12%  Similarity=0.033  Sum_probs=74.7

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhH
Q psy1678         129 WHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASE  208 (297)
Q Consensus       129 ~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~  208 (297)
                      +.+-.|+|+-. .+.....+.+.+....|+.... ............+.+++++++|.++           .+++++||+
T Consensus         6 ~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~~-----------~iv~~sg~~   72 (349)
T cd06454           6 FCSNDYLGLAN-HPEVIEAAKEALDKYGVGAGGS-RLISGTSDLHEELEEELAEFHGKEA-----------ALVFSSGYA   72 (349)
T ss_pred             cccCCccccCC-CHHHHHHHHHHHHHhCCCCCCc-CeecCCchHHHHHHHHHHHHhCCCC-----------EEEeccHHH
Confidence            34445666542 2344445555555433322211 0111123333445567888888642           677888899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         209 ATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       209 anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      +|+.++.+..    .               +.-.|++++..|+++..++...|..++.++     .+|++.|++.|++.
T Consensus        73 a~~~~~~~~~----~---------------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~le~~i~~~  127 (349)
T cd06454          73 ANDGVLSTLA----G---------------KGDLIISDSLNHASIIDGIRLSGAKKRIFK-----HNDMEDLEKLLREA  127 (349)
T ss_pred             HHHHHHHHhc----C---------------CCCEEEEehhhhHHHHHHHHHcCCceEEec-----CCCHHHHHHHHHHh
Confidence            9987765432    1               111466788999999999999999888776     35888999988764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK06225 aspartate aminotransferase; Provisional

Probab=97.17  E-value=0.0065  Score=57.32  Aligned_cols=84  Identities=15%  Similarity=0.207  Sum_probs=63.9

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      +..+++++.+|.++.         ..++|+|||+++..++.+.-    .              ..+ .|++++-.++...
T Consensus        70 ~lr~~ia~~l~~~~~---------~v~~~~g~t~al~~~~~~~~----~--------------~gd-~vl~~~p~y~~~~  121 (380)
T PRK06225         70 ELRELILKDLGLDDD---------EALITAGATESLYLVMRAFL----S--------------PGD-NAVTPDPGYLIID  121 (380)
T ss_pred             HHHHHHHHhcCCCCC---------cEEEeCCHHHHHHHHHHHhc----C--------------CCC-EEEEcCCCCcchH
Confidence            466788888998653         59999999999988877641    1              012 3556667777788


Q ss_pred             HHHHhcCCceEEeeCCC---CCCcCHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADD---SYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~---~~~md~~~L~~~i~~  286 (297)
                      .++...|.+++.||++.   ++.+|+++|++.+.+
T Consensus       122 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~  156 (380)
T PRK06225        122 NFASRFGAEVIEVPIYSEECNYKLTPELVKENMDE  156 (380)
T ss_pred             HHHHHhCceEEeeccccccCCccCCHHHHHhhcCC
Confidence            88899999999999853   468999999988764

>PRK07337 aminotransferase; Validated

Probab=97.17  E-value=0.0053  Score=58.09  Aligned_cols=112  Identities=15%  Similarity=0.110  Sum_probs=79.1

Q ss_pred             HHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhh
Q psy1678         149 ADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEA  228 (297)
Q Consensus       149 ~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~  228 (297)
                      .+.+...+......|........+.+.+.+|+.+..|..-+.       ..-++|+|+|++...++.+-    +.     
T Consensus        49 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~-------~~i~~t~G~~~al~~~~~~l----~~-----  112 (388)
T PRK07337         49 VEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAP-------ERIVVTAGASAALLLACLAL----VE-----  112 (388)
T ss_pred             HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh-------HhEEEecCcHHHHHHHHHHh----cC-----
Confidence            444554444333345444456788888999998888864210       25789999999877666542    11     


Q ss_pred             CCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         229 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       229 ~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                                +.-.|+++.-+|.+...++...|.+++.||+|+  ++.+|+++|++.+..
T Consensus       113 ----------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (388)
T PRK07337        113 ----------RGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGE  162 (388)
T ss_pred             ----------CCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCc
Confidence                      112467788899999999999999999999974  579999999988753

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=97.12  E-value=0.0026  Score=60.33  Aligned_cols=93  Identities=17%  Similarity=0.127  Sum_probs=62.2

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..+....+|+.+.+++++++|.+.          .-++++|||+++..++.+..    .              ... .|+
T Consensus        59 ~~~~~~~l~~~~~~~~~~~~g~~~----------~~v~~~sgt~a~~~~l~~l~----~--------------~Gd-~Vl  109 (402)
T cd00378          59 GCEYVDEIEDLAIERAKKLFGAEY----------ANVQPHSGSQANLAVYFALL----E--------------PGD-TIM  109 (402)
T ss_pred             CchHHHHHHHHHHHHHHHHhCCCc----------eeeecCCcHHHHHHHHHHhc----C--------------CCC-EEE
Confidence            345567788888899999999864          24555568999987776531    1              011 355


Q ss_pred             ecCCCcchHHH-----HHHhcCCceEEeeCCC---CCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSVER-----AGLLGGVTIRGLPADD---SYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si~K-----aa~~lg~~v~~Vp~d~---~~~md~~~L~~~i~~  286 (297)
                      ++...|.+...     ++...|..++.++++.   ++.+|+++|++.+.+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~  159 (402)
T cd00378         110 GLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALE  159 (402)
T ss_pred             EecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHh
Confidence            55556544322     2555677777776643   699999999999864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PLN02231 alanine transaminase

Probab=97.11  E-value=0.021  Score=56.70  Aligned_cols=107  Identities=15%  Similarity=0.065  Sum_probs=80.2

Q ss_pred             cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678         161 FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN  240 (297)
Q Consensus       161 ~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~  240 (297)
                      ..|..+.+...+-+.+.+|+.+..|++-+       ...-++|+|+++++.+++.+....                  +.
T Consensus       162 ~~Y~~s~G~~~lReaIA~~~~~r~g~~~~-------pe~I~iT~Ga~~ai~~~~~~l~~~------------------~g  216 (534)
T PLN02231        162 GAYSHSQGIKGLRDAIAAGIEARDGFPAD-------PNDIFLTDGASPAVHMMMQLLIRS------------------EK  216 (534)
T ss_pred             cCcCCCCCcHHHHHHHHHHHHhccCCCCC-------cccEEEeCCHHHHHHHHHHHhccC------------------CC
Confidence            34666666677878888898888787532       136889999999988877764210                  11


Q ss_pred             eEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCCC
Q psy1678         241 LVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKGK  292 (297)
Q Consensus       241 ~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G~  292 (297)
                      -.|++..-..+....++...|..++.+|.|+  ++.+|+++|++++++...+|.
T Consensus       217 d~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~  270 (534)
T PLN02231        217 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGI  270 (534)
T ss_pred             CEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCC
Confidence            2456677788888888999999999999985  379999999999988766653

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=97.11  E-value=0.0067  Score=57.30  Aligned_cols=89  Identities=17%  Similarity=0.195  Sum_probs=67.0

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      .+|....+|+.    +++++|.+.           .++++|||+|+..++.+..   +.               +.-.|+
T Consensus        27 ~g~~~~~le~~----la~~~g~~~-----------~v~~~sgt~al~~~l~al~---~~---------------~Gd~Vi   73 (380)
T TIGR03588        27 QGPTVPAFEEA----LAEYVGAKY-----------AVAFNSATSALHIACLALG---VG---------------PGDRVW   73 (380)
T ss_pred             CChhHHHHHHH----HHHHHCCCe-----------EEEEcCHHHHHHHHHHHcC---CC---------------CCCEEE
Confidence            35666667664    556667642           6777889999888776541   10               112477


Q ss_pred             ecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      ++...|.+...++...|+.++.+++|+ ++.+|+++|+++|++
T Consensus        74 v~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~  116 (380)
T TIGR03588        74 TTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDALEKKLAA  116 (380)
T ss_pred             eCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHHhhc
Confidence            888999999999999999999999974 789999999999974

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>TIGR01814 kynureninase kynureninase

Probab=97.11  E-value=0.0066  Score=57.92  Aligned_cols=83  Identities=16%  Similarity=0.096  Sum_probs=59.4

Q ss_pred             HHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH--
Q psy1678         178 DWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER--  255 (297)
Q Consensus       178 ~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K--  255 (297)
                      +.+ +++|.+++         .-+||+|+|+++..++...    +..    +        .++.+|+++...|.|+..  
T Consensus        77 ~~~-~l~g~~~~---------~v~~~~~~t~~l~~~~~~~----~~~----~--------~~~~~i~~~~~~~~s~~~~~  130 (406)
T TIGR01814        77 LKL-RLVGAKED---------EVVVMNTLTINLHLLLASF----YKP----T--------PKRYKILLEAKAFPSDHYAI  130 (406)
T ss_pred             ccc-cccCCCCC---------cEEEeCCchHHHHHHHHHh----cCC----c--------CCccEEEecCCCCChHHHHH
Confidence            345 88998653         5899999999987776543    110    0        122367789999998544  


Q ss_pred             --HHHhcCCce----EEeeCCCCCCcCHHHHHHHHHH
Q psy1678         256 --AGLLGGVTI----RGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       256 --aa~~lg~~v----~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                        .++..|+.+    +.|+.+.+|.+|++.|++.++.
T Consensus       131 ~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~  167 (406)
T TIGR01814       131 ESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEK  167 (406)
T ss_pred             HHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHh
Confidence              455678877    5777787899999999998864

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PRK07682 hypothetical protein; Validated

Probab=97.10  E-value=0.0066  Score=57.18  Aligned_cols=100  Identities=18%  Similarity=0.167  Sum_probs=73.6

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|...+....+.+.+.+|+.+.+|.+-+.      ...-++|+||++++..++.+.    ..               +.-
T Consensus        52 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~------~~~i~~t~G~~~al~~~~~~l----~~---------------~gd  106 (378)
T PRK07682         52 SYTANAGLLELRQEIAKYLKKRFAVSYDP------NDEIIVTVGASQALDVAMRAI----IN---------------PGD  106 (378)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHhCCCCCC------CCcEEEeCChHHHHHHHHHHh----CC---------------CCC
Confidence            34445667788888999999888874210      014889999999988776543    11               112


Q ss_pred             EEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE  286 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~  286 (297)
                      .|++++-+++....++..+|..++.++++  +++.+|+++|++++.+
T Consensus       107 ~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~  153 (378)
T PRK07682        107 EVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITA  153 (378)
T ss_pred             EEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCc
Confidence            46677888888999999999999999986  3689999999998754

>PRK08912 hypothetical protein; Provisional

Probab=97.10  E-value=0.0094  Score=56.34  Aligned_cols=98  Identities=16%  Similarity=0.074  Sum_probs=71.7

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |........+.+.+.+|+.+..|++-+.      ....++|+|||+++..++.+-    ..               +.-.
T Consensus        59 Y~~~~G~~~lr~~ia~~~~~~~g~~~~~------~~~i~~t~G~~~al~~~~~~~----~~---------------~gd~  113 (387)
T PRK08912         59 YPPMMGLPELRQAVAAHYARFQGLDLDP------ETEVMVTSGATEALAAALLAL----VE---------------PGDE  113 (387)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHhCCCCCC------cccEEEeCCcHHHHHHHHHHh----cC---------------CCCE
Confidence            3333345678888888998888874220      015889999999986555532    10               1125


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE  285 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~  285 (297)
                      |+++.-+|+.+..++...|.+++.+|+++ ++.+|++.|++.+.
T Consensus       114 Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~  157 (387)
T PRK08912        114 VVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFS  157 (387)
T ss_pred             EEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhC
Confidence            67788899999999999999999999975 68999999998875

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=97.06  E-value=0.0027  Score=59.37  Aligned_cols=84  Identities=13%  Similarity=0.100  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH
Q psy1678         174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV  253 (297)
Q Consensus       174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si  253 (297)
                      ..+.+++++.+|.+++         .-++|+|+++++.+++.+.    ..              .++-.|+++.-++...
T Consensus        60 ~~l~~~~a~~~g~~~~---------~I~~~~Gs~e~i~~~~~~~----~~--------------~g~~~vli~~P~y~~y  112 (351)
T PRK01688         60 KAVIENYAAYAGVKPE---------QVLVSRGADEGIELLIRAF----CE--------------PGKDAILYCPPTYGMY  112 (351)
T ss_pred             HHHHHHHHHHhCCCHH---------HEEEcCCHHHHHHHHHHHh----cC--------------CCCCEEEEcCCCHHHH
Confidence            3677889999999765         5889999999887776542    10              1112466677888889


Q ss_pred             HHHHHhcCCceEEeeCCCCCCcCHHHHHHHH
Q psy1678         254 ERAGLLGGVTIRGLPADDSYKLRGDALEAAI  284 (297)
Q Consensus       254 ~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i  284 (297)
                      ..+++..|++++.||.++++++|+++|++++
T Consensus       113 ~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~~  143 (351)
T PRK01688        113 SVSAETIGVEIRTVPTLDNWQLDLPAIADNL  143 (351)
T ss_pred             HHHHHHcCCEEEEeecCCCCCCCHHHHHHhc
Confidence            9999999999999999988999999998876

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=97.06  E-value=0.0031  Score=60.32  Aligned_cols=141  Identities=13%  Similarity=0.096  Sum_probs=88.0

Q ss_pred             HHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccC-----------chhhHHHHHHHHHHHH
Q psy1678         114 VMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIAS-----------PACTELEVVMLDWLGK  182 (297)
Q Consensus       114 il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~-----------p~~~~iE~~v~~~l~~  182 (297)
                      +++.|.++...+...|+-|..   --+......-++..+..++..|.+.++.|           |-...-  +.-+.+|+
T Consensus         3 l~~aL~~y~~~~~~~fh~PGH---k~G~~~~~~p~g~~~~~f~G~~~~~~Dl~te~~~lD~L~~p~G~I~--eAe~~aA~   77 (417)
T PF01276_consen    3 LFEALKKYAEEGPYSFHMPGH---KGGRGFDKSPAGRLFYDFFGENLFRADLSTEVPGLDDLHDPEGIIK--EAEELAAR   77 (417)
T ss_dssp             HHHHHHHHHHTT-EESSSSTT---TTTTCGGGSHHHHHHHHHH-HHHHHT---TTSTTCBBTTTTBTHHH--HHHHHHHH
T ss_pred             HHHHHHHHHhCCCceeecCcc---CCCCCCCcchHHHHHHHHHhhHHHHHHHhhcccccCcccCCccHHH--HHHHHHHH
Confidence            456667777777777776643   32222222334555555555544444432           322222  34468999


Q ss_pred             HcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCC
Q psy1678         183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGV  262 (297)
Q Consensus       183 llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~  262 (297)
                      ++|.+.+          -.+|.|.|.+|..++.++-.                   +.-.|++...+|-|+..|+.+.|+
T Consensus        78 ~fGAd~t----------~flvnGsT~g~~a~i~a~~~-------------------~gd~VLv~RN~HkSv~~alil~ga  128 (417)
T PF01276_consen   78 AFGADKT----------FFLVNGSTSGNQAMIMALCR-------------------PGDKVLVDRNCHKSVYNALILSGA  128 (417)
T ss_dssp             HHTESEE----------EEESSHHHHHHHHHHHHHTT-------------------TTCEEEEETT--HHHHHHHHHHTE
T ss_pred             hcCCCeE----------EEEecCchHHHHHHHHHhcC-------------------CCCEEEEcCCcHHHHHHHHHHcCC
Confidence            9999985          56789999999988887621                   122578899999999999999999


Q ss_pred             ceEEeeCC-CC----CCcCH-----HHHHHHHHHHH
Q psy1678         263 TIRGLPAD-DS----YKLRG-----DALEAAIEEDL  288 (297)
Q Consensus       263 ~v~~Vp~d-~~----~~md~-----~~L~~~i~~~~  288 (297)
                      .++.|+.. +.    +.+++     +.++++|++.-
T Consensus       129 ~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p  164 (417)
T PF01276_consen  129 IPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHP  164 (417)
T ss_dssp             EEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCT
T ss_pred             eEEEecCCccccCCccCCChhhhhHHHHHHHHHhCc
Confidence            88877764 21    25666     99999998753

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK10534 L-threonine aldolase; Provisional

Probab=97.04  E-value=0.0036  Score=57.83  Aligned_cols=90  Identities=20%  Similarity=0.190  Sum_probs=62.4

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |...|...++|+.    +++++|.++           .++|+||+++++.++.+...                  ..+ .
T Consensus        30 Y~~~~~~~~L~~~----la~~~g~~~-----------~~v~~~g~~a~~~~l~~~~~------------------~gd-~   75 (333)
T PRK10534         30 YGDDPTVNALQDY----AAELSGKEA-----------ALFLPTGTQANLVALLSHCE------------------RGE-E   75 (333)
T ss_pred             cCCCHHHHHHHHH----HHHHhCCCe-----------EEEeCchHHHHHHHHHHhcC------------------CCC-e
Confidence            3345666677764    466678864           57999999999999886311                  012 3


Q ss_pred             EEecCCCcchHHHH--HHhcC-CceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERA--GLLGG-VTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~Si~Ka--a~~lg-~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      |+++..+|.+..++  +..+| ..++.+++++++.+|+++|+++|.+
T Consensus        76 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~  122 (333)
T PRK10534         76 YIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKP  122 (333)
T ss_pred             eEEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcc
Confidence            55677788544443  34454 6778888888999999999998854

>PTZ00377 alanine aminotransferase; Provisional

Probab=97.01  E-value=0.022  Score=55.72  Aligned_cols=105  Identities=15%  Similarity=0.088  Sum_probs=78.7

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|....+...+-+.+.+|+.+..|++-+.       ..-++|+|+++++..++.+...    .              +.-
T Consensus       110 ~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-------~~I~it~Ga~~al~~~~~~l~~----~--------------~gD  164 (481)
T PTZ00377        110 AYTDSAGYPFVRKAVAAFIERRDGVPKDP-------SDIFLTDGASSGIKLLLQLLIG----D--------------PSD  164 (481)
T ss_pred             CcCcccCCHHHHHHHHHHHHHhcCCCCCh-------hhEEEcCCHHHHHHHHHHHhcc----C--------------CCC
Confidence            35555556678888889998887765321       2688999999999888776410    0              112


Q ss_pred             EEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCC
Q psy1678         242 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKG  291 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G  291 (297)
                      .|++..-++++...++...|..++.||+++  .+.+|+++|+++|.+...+|
T Consensus       165 ~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~  216 (481)
T PTZ00377        165 GVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNG  216 (481)
T ss_pred             EEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcC
Confidence            467788899999999999999999999975  36899999999998755544

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=97.00  E-value=0.0034  Score=58.46  Aligned_cols=105  Identities=24%  Similarity=0.341  Sum_probs=78.0

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCC-eEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGG-GVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN  240 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~-G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~  240 (297)
                      .|..+.+...++..+.+|+.+--|.+.+        .. .+++++|+.+++.++.....  .               .+.
T Consensus        39 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~--------~~~~i~~~~G~~~~~~~~~~~~~--~---------------~~~   93 (363)
T PF00155_consen   39 GYPPPQGYPELREAIADFLGRRYGVPVD--------PEANILVTSGAQAALFLLLRLLK--I---------------NPG   93 (363)
T ss_dssp             SSTCTTHHHHHHHHHHHHHHHHHTHHTT--------GGEGEEEESHHHHHHHHHHHHHH--S---------------STT
T ss_pred             cCCCchhhHHHHHHHHHHhhhccCcccc--------cceEEEEecccccchhhhhhccc--c---------------ccc
Confidence            4444555678888888888866666543        13 56677777777766655432  0               012


Q ss_pred             eEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHHHHHCC
Q psy1678         241 LVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKG  291 (297)
Q Consensus       241 ~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~~~~~G  291 (297)
                      -.|++.+-+|+.+..+++..|+.++.+|++  .++.+|+++|++.+++...++
T Consensus        94 ~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~  146 (363)
T PF00155_consen   94 DTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKG  146 (363)
T ss_dssp             SEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTT
T ss_pred             ccceecCCccccccccccccCceeeeccccccccccccccccccccccccccc
Confidence            257778899999999999999999999975  789999999999999987776

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=96.99  E-value=0.011  Score=55.24  Aligned_cols=85  Identities=16%  Similarity=0.226  Sum_probs=63.9

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+++++.+|.+..        ..-++|+|+++++..++.+.    ..               +.-.|+++.-++..+.
T Consensus        67 ~lr~~ia~~~~~~~~--------~~I~~t~G~~~~i~~~~~~~----~~---------------~gd~vlv~~P~y~~~~  119 (356)
T PRK04870         67 ALKAALRAAMGVPAG--------ADVLLGNGSDELIQLLALAC----AK---------------PGATVLAPEPGFVMYR  119 (356)
T ss_pred             HHHHHHHHHhCcCCC--------CcEEEcCCHHHHHHHHHHHh----cC---------------CCCEEEECCCCHHHHH
Confidence            455677777887642        14778888888776655442    11               1124667788888899


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .++...|++++.+|+++++.+|++.|++.+..
T Consensus       120 ~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~  151 (356)
T PRK04870        120 MSAKLAGLEFVGVPLTADFTLDLPAMLAAIAE  151 (356)
T ss_pred             HHHHHcCCEEEEecCCCCCCCCHHHHHHHhhc
Confidence            99999999999999998899999999998864

>PRK06836 aspartate aminotransferase; Provisional

Probab=96.96  E-value=0.015  Score=55.25  Aligned_cols=114  Identities=18%  Similarity=0.103  Sum_probs=75.4

Q ss_pred             HHHHHHHHhcccc---ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHH
Q psy1678         147 IVADILSDSIACI---GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQ  223 (297)
Q Consensus       147 vl~d~l~~~lN~n---~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~  223 (297)
                      .+.+.+..+++..   ...+........+.+.+.+|+....|.+-+       ...-++|+|+|++...++.+.    ..
T Consensus        50 ~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~-------~~~i~~t~G~~~al~~~~~~l----~~  118 (394)
T PRK06836         50 AVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLT-------ADHIVMTCGAAGALNVALKAI----LN  118 (394)
T ss_pred             HHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCC-------cCcEEEeCChHHHHHHHHHHh----cC
Confidence            3445555544432   222333344455666677777766554211       125789999999887766543    11


Q ss_pred             HHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC-CCcCHHHHHHHHHH
Q psy1678         224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  286 (297)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~-~~md~~~L~~~i~~  286 (297)
                                     +.-.|++++.++.....++...|++++.||+|++ +.+|+++|++.+++
T Consensus       119 ---------------~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~  167 (394)
T PRK06836        119 ---------------PGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITP  167 (394)
T ss_pred             ---------------CCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCc
Confidence                           1124667888888888899999999999999876 89999999998854

>PLN02368 alanine transaminase

Probab=96.95  E-value=0.026  Score=54.15  Aligned_cols=105  Identities=11%  Similarity=0.051  Sum_probs=75.6

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|..+.+...+-..+.+|+.+..|++-+.       -.-++|+|++++...++.+...   .               +.-
T Consensus       102 ~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-------~~I~it~Ga~~al~~~~~~l~~---~---------------pGd  156 (407)
T PLN02368        102 AYSDSRGLPGVRKEVAEFIERRDGYPSDP-------ELIFLTDGASKGVMQILNAVIR---G---------------EKD  156 (407)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhcCCCCCh-------hhEEEcccHHHHHHHHHHHHcC---C---------------CCC
Confidence            34433344567778889998887864211       2588999999998777765310   0               111


Q ss_pred             EEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCC
Q psy1678         242 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKG  291 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G  291 (297)
                      .|++.+-+.+....++...|.+++.||+++  ++.+|++.|++.+++...++
T Consensus       157 ~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~  208 (407)
T PLN02368        157 GVLVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKG  208 (407)
T ss_pred             EEEEeCCCCccHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcC
Confidence            456677788888999999999999999975  47999999999998654443

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.94  E-value=0.007  Score=57.13  Aligned_cols=105  Identities=17%  Similarity=0.134  Sum_probs=80.0

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      ..+.+...+...-.  ..+|-..++|+    ++++.+|-..           .+.|+.||.|+.+||++.-   +     
T Consensus        17 e~~~v~~vl~sg~i--~~G~~v~~FE~----~~ae~~G~k~-----------ava~~sgT~AL~laL~al~---i-----   71 (374)
T COG0399          17 ELAAVQEVLKSGWL--TGGPFVRRFEQ----AFAEYLGVKY-----------AVAVSSGTAALHLALLALA---I-----   71 (374)
T ss_pred             HHHHHHHHHHcCCe--ecChHHHHHHH----HHHHHhCCCe-----------EEEecChHHHHHHHHHhcC---C-----
Confidence            34445555554322  23788889997    7888899864           7889999999999998631   1     


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEED  287 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~~  287 (297)
                       +         +.-.|+++..+-.+-..+.-+.|.+.+-|.+|. .+.||++.||++|.+.
T Consensus        72 -g---------~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~  122 (374)
T COG0399          72 -G---------PGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPR  122 (374)
T ss_pred             -C---------CCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccC
Confidence             1         112567788888888888889999999999995 6999999999999875

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=96.94  E-value=0.019  Score=53.61  Aligned_cols=103  Identities=14%  Similarity=0.143  Sum_probs=73.8

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|........+.+.+.+|+.+..|.+-+.      ...-++|+|++++...++.+.    ...    |        ...-
T Consensus        31 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~~------~~~Iiit~Gs~~ai~~~~~~~----~~~----g--------~~~d   88 (350)
T TIGR03537        31 QYPSALGTKALREAISGWFERRFGVKLDP------DAQVLPSAGSKEAIFHFPLVF----IDP----E--------EDRR   88 (350)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCcEEEcCChHHHHHHHHHHH----cCC----C--------CCCc
Confidence            34433445678888999998888865321      015889999999887765543    110    1        0112


Q ss_pred             EEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                      .|+++.-++.....++..+|.+++.||+++  .+++|+++|++++.+
T Consensus        89 ~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~  135 (350)
T TIGR03537        89 RVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILE  135 (350)
T ss_pred             eEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhh
Confidence            466778899999999999999999999973  356999999998865

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=96.92  E-value=0.0031  Score=61.25  Aligned_cols=92  Identities=12%  Similarity=-0.011  Sum_probs=65.7

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEc---CChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQ---GTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG  243 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~t---sGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i  243 (297)
                      .....+|..+.+.++++||.+++         .-++|   ++||++|+.++.+.    +.               +.-.|
T Consensus        76 ~~~~~iE~~ar~~~a~lf~a~~~---------~~~~~~~~~sgt~an~~v~~al----~~---------------~gd~I  127 (452)
T PTZ00094         76 EVVDKIENLCQKRALEAFGLDPE---------EWGVNVQPYSGSPANFAVYTAL----LQ---------------PHDRI  127 (452)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCcc---------cceeecCCCchHHHHHHHHHHh----cC---------------CCCEE
Confidence            44578888889999999998653         12244   89999999988774    11               11257


Q ss_pred             EecCCCcchHHHHHH----------hcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         244 YCSDQAHSSVERAGL----------LGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       244 ~~s~~aH~Si~Kaa~----------~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +++...|.+....+.          ..++.+..+++|.+|.+|+++|++.+++
T Consensus       128 i~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~  180 (452)
T PTZ00094        128 MGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKA  180 (452)
T ss_pred             EecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHH
Confidence            778888877654331          1224566777888899999999999975

>PRK08636 aspartate aminotransferase; Provisional

Probab=96.92  E-value=0.033  Score=53.04  Aligned_cols=119  Identities=14%  Similarity=0.215  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCC-CeEEcCChhHHHHHHHHHHHHHHHH
Q psy1678         145 PAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKG-GGVIQGTASEATLVALLGAKAKTMQ  223 (297)
Q Consensus       145 ~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~-~G~~tsGGT~anl~Al~~AR~~~~~  223 (297)
                      ..++..+.....+.....|....+...+...+.+|+.+..|++-+.       . .-++|+|++++...++.+-    ..
T Consensus        49 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~-------~~~I~it~G~~~al~~~~~~l----~~  117 (403)
T PRK08636         49 QHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDP-------ETEVVATMGSKEGYVHLVQAI----TN  117 (403)
T ss_pred             HHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC-------CCeEEECCChHHHHHHHHHHh----CC
Confidence            3344444443333223344444455678788899999888875321       1 3789999999887766542    11


Q ss_pred             HHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHHHHH
Q psy1678         224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEEDLK  289 (297)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~~~~  289 (297)
                                     +.-.|++.+-+.+.+..++...|.+++.||++  +++.+|++.|...+++...
T Consensus       118 ---------------~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~  170 (403)
T PRK08636        118 ---------------PGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALR  170 (403)
T ss_pred             ---------------CCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHh
Confidence                           12256677788888888999999999999985  4579999988777765443

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=96.91  E-value=0.01  Score=55.62  Aligned_cols=94  Identities=13%  Similarity=0.034  Sum_probs=67.8

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      |....+-.++.+.+++++|.+++.       ..-++|++||+++..++.+.-.                  .+.-+++ .
T Consensus        33 ~~~~~~~~~~~~~l~~l~~~~~~~-------~~i~~~~~gt~~l~~~~~~l~~------------------~~~~vlv-~   86 (368)
T PRK13479         33 DDFNALTASVRAKLVAIATGEEGY-------TCVPLQGSGTFSVEAAIGSLVP------------------RDGKVLV-P   86 (368)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCCc-------eEEEEcCCcHHHHHHHHHhccC------------------CCCeEEE-E
Confidence            334445667899999999986421       1366899999999887776411                  1122333 3


Q ss_pred             CCCcchH--HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         247 DQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       247 ~~aH~Si--~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ...+|..  .+++...|++++.||++.++.+|+++|+++|.+
T Consensus        87 ~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~  128 (368)
T PRK13479         87 DNGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAA  128 (368)
T ss_pred             eCCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHh
Confidence            4555554  488888999999999998889999999999864

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=96.89  E-value=0.011  Score=55.96  Aligned_cols=81  Identities=12%  Similarity=0.003  Sum_probs=58.2

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++-+.+++++|.+           ..++++||++||..++.+.    +.               +.-.|+++...|.|+.
T Consensus        87 ~le~~ia~~~g~~-----------~~ii~~~~~~a~~~~~~~l----~~---------------~gd~vi~~~~~~~s~~  136 (393)
T TIGR01822        87 ELEAKIAAFLGTE-----------DTILYASCFDANGGLFETL----LG---------------AEDAIISDALNHASII  136 (393)
T ss_pred             HHHHHHHHHhCCC-----------cEEEECchHHHHHHHHHHh----CC---------------CCCEEEEeccccHHHH
Confidence            3446778888874           3778899999998655432    11               1125777899999999


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHC
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKK  290 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~  290 (297)
                      .++.+.+...+.++     .+|+++|++.|.+....
T Consensus       137 ~~~~~~~~~~~~~~-----~~d~~~l~~~i~~~~~~  167 (393)
T TIGR01822       137 DGVRLCKAKRYRYA-----NNDMADLEAQLKEARAA  167 (393)
T ss_pred             HHHHhcCCceEEeC-----CCCHHHHHHHHHhhhhc
Confidence            99998887665543     48999999999875443

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK05942 aspartate aminotransferase; Provisional

Probab=96.86  E-value=0.018  Score=54.67  Aligned_cols=100  Identities=10%  Similarity=0.110  Sum_probs=71.2

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|....+...+.+.+.+|+.+..|.+-+.      ....++|+|++++...++.+.    +.               +.-
T Consensus        68 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~~------~~~i~vt~G~~~al~~~~~~~----~~---------------~gd  122 (394)
T PRK05942         68 GYPPFEGTASFRQAITDWYHRRYGVELDP------DSEALPLLGSKEGLTHLALAY----VN---------------PGD  122 (394)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHCCCcCC------CCeEEEccChHHHHHHHHHHh----CC---------------CCC
Confidence            34333344678888999999888864210      013677999999988776543    11               112


Q ss_pred             EEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                      .|+++.-++.....++...|.+++.||+|.  .+.+|+++|++.+.+
T Consensus       123 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~  169 (394)
T PRK05942        123 VVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQ  169 (394)
T ss_pred             EEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhccc
Confidence            466778888888888889999999999984  357999999988853

>PLN02483 serine palmitoyltransferase

Probab=96.86  E-value=0.019  Score=56.44  Aligned_cols=126  Identities=13%  Similarity=0.173  Sum_probs=77.6

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCCh
Q psy1678         127 THWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTA  206 (297)
Q Consensus       127 ~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGG  206 (297)
                      ..+++-.|+|+-.+.+.....+.+.+...--..+...... .....-.++-+.+++++|-++           .++.+.|
T Consensus       103 ~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~-g~~~~~~ele~~lA~~~g~~~-----------ai~~~~G  170 (489)
T PLN02483        103 LNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDG-GTTKLHRELEELVARFVGKPA-----------AIVFGMG  170 (489)
T ss_pred             EEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCcccccc-CCcHHHHHHHHHHHHHhCCCc-----------EEEECCH
Confidence            4677778999875444333344444444321111222111 122333345567788888654           4455557


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         207 SEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       207 T~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +.+|+.++.+.    +.               +.-.|++.+..|.|+..++++.|++++.+|.+     |.++|++.|++
T Consensus       171 ~~an~~~i~al----~~---------------~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~  226 (489)
T PLN02483        171 YATNSTIIPAL----IG---------------KGGLIISDSLNHNSIVNGARGSGATIRVFQHN-----TPSHLEEVLRE  226 (489)
T ss_pred             HHHHHHHHHHh----CC---------------CCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHh
Confidence            88887555441    11               11257789999999999999999999999865     57888888876


Q ss_pred             HH
Q psy1678         287 DL  288 (297)
Q Consensus       287 ~~  288 (297)
                      ..
T Consensus       227 ~i  228 (489)
T PLN02483        227 QI  228 (489)
T ss_pred             hh
Confidence            44

>PRK07683 aminotransferase A; Validated

Probab=96.84  E-value=0.018  Score=54.60  Aligned_cols=114  Identities=18%  Similarity=0.129  Sum_probs=77.5

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +.+.+...+..+...|...+....+++.+.+|+.+..|.+-+.      ....++|+|+|+++..++.+.    +.    
T Consensus        46 ~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~------~~~I~~t~G~~~al~~~~~~l----~~----  111 (387)
T PRK07683         46 VKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSP------ESEIIVTIGASEAIDIAFRTI----LE----  111 (387)
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCcEEEeCChHHHHHHHHHHh----CC----
Confidence            3455555554444445445566788888999998777764210      115899999999988776542    11    


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                                 +.-.|+++.-+......++..+|.+++.+|+|+ .+.+|+++|++.+.+
T Consensus       112 -----------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~  160 (387)
T PRK07683        112 -----------PGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITE  160 (387)
T ss_pred             -----------CCCEEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcCc
Confidence                       111456666666677888888999999999975 467888999887753

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=96.81  E-value=0.018  Score=55.61  Aligned_cols=99  Identities=10%  Similarity=0.112  Sum_probs=70.8

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|.......++.+.+.+|+.+-.|++-+       ...-++|+|+|+++.+++.+..    .               +.-
T Consensus        89 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~-------~~~v~it~G~~~al~l~~~~l~----~---------------~Gd  142 (430)
T PLN00145         89 SYSTCVGLLPARRAIAEYLSRDLPYELS-------TDDIYLTAGCAQAIEIIMSVLA----Q---------------PGA  142 (430)
T ss_pred             CCCCCccCHHHHHHHHHHHhhccCCCCC-------hhhEEEeCCHHHHHHHHHHHhc----C---------------CCC
Confidence            3444445667777788888776665421       1268999999999988777531    0               111


Q ss_pred             EEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE  286 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~  286 (297)
                      .|+++.-+.+.....+.+.|++++.++++  +++.+|+++|++.+++
T Consensus       143 ~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~  189 (430)
T PLN00145        143 NILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADE  189 (430)
T ss_pred             EEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCc
Confidence            46667778888888899999999998874  4689999999887754

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=96.80  E-value=0.042  Score=52.36  Aligned_cols=113  Identities=12%  Similarity=0.106  Sum_probs=71.2

Q ss_pred             HHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       148 l~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      +.+.+...+... ...+...+....+.+.+.+++..-.|++-.       ...-++|+|||+++..++.+..+       
T Consensus        53 ~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-------~~~ii~t~G~t~al~~~~~~l~~-------  118 (403)
T TIGR01265        53 AEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLT-------ADDVVLTSGCSQAIEICIEALAN-------  118 (403)
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-------HHHEEEecChHHHHHHHHHHhCC-------
Confidence            344444444332 223333333344555555555544343211       12588999999999888877421       


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE  286 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~  286 (297)
                                  +.-.|+++.-+++....++...|++++.++++  +++.+|++.|++.+.+
T Consensus       119 ------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~  168 (403)
T TIGR01265       119 ------------PGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADE  168 (403)
T ss_pred             ------------CCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCc
Confidence                        11145667778888888999999999999885  3578999999988754

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK07324 transaminase; Validated

Probab=96.79  E-value=0.0093  Score=56.30  Aligned_cols=69  Identities=9%  Similarity=-0.014  Sum_probs=53.4

Q ss_pred             CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcC
Q psy1678         199 GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLR  276 (297)
Q Consensus       199 ~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md  276 (297)
                      .-++|+|+|+++..++.+..    .              ... .|+++.-++.+....++..|.+++.||+++  .+.+|
T Consensus        82 ~vi~t~G~~~al~~~~~~l~----~--------------~gd-~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d  142 (373)
T PRK07324         82 NILQTNGATGANFLVLYALV----E--------------PGD-HVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPD  142 (373)
T ss_pred             hEEEcCChHHHHHHHHHHhC----C--------------CCC-EEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCC
Confidence            47899999999988876641    1              012 456677888889999999999999999985  35689


Q ss_pred             HHHHHHHHHH
Q psy1678         277 GDALEAAIEE  286 (297)
Q Consensus       277 ~~~L~~~i~~  286 (297)
                      +++|++.+..
T Consensus       143 ~~~l~~~~~~  152 (373)
T PRK07324        143 LDELRRLVRP  152 (373)
T ss_pred             HHHHHHhCCC
Confidence            9999887753

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=96.78  E-value=0.0062  Score=56.50  Aligned_cols=83  Identities=13%  Similarity=0.129  Sum_probs=61.0

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+.+++++|.+++         .-++|+|+|+++..++.+.    ..               +.-.|+++.-.+....
T Consensus        58 ~lr~~ia~~~~~~~~---------~i~~~~G~~~~l~~~~~~l----~~---------------~gd~v~~~~p~y~~~~  109 (346)
T TIGR01141        58 ELKQALADYYGVDPE---------QILLGNGSDEIIELLIRAF----LE---------------PGDAVLVPPPTYSMYE  109 (346)
T ss_pred             HHHHHHHHHhCcChH---------HEEEcCCHHHHHHHHHHHh----cC---------------CCCEEEEcCCCHHHHH
Confidence            455677788887543         4889999999886665543    11               1124566666666666


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      .++...|++++.+|++++|.+|++.|++.+.
T Consensus       110 ~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~  140 (346)
T TIGR01141       110 ISAKIHGAEVVKVPLDEDGQLDLEDILVAID  140 (346)
T ss_pred             HHHHHcCCeEEEeccCCCCCCCHHHHHHhcC
Confidence            7888899999999999999999999998763

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=96.78  E-value=0.0062  Score=56.66  Aligned_cols=80  Identities=15%  Similarity=0.091  Sum_probs=61.1

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+.+++.++.+++         ..++|+|+++++.+++.+..+                  ... .|++++-.++...
T Consensus        64 ~lr~aia~~~~~~~~---------~I~it~G~~~al~~~~~~l~~------------------~gd-~vlv~~P~y~~~~  115 (353)
T PRK05387         64 ALRQAIAAYYGLDPE---------QVFVGNGSDEVLAHAFLAFFN------------------HDR-PLLFPDITYSFYP  115 (353)
T ss_pred             HHHHHHHHHhCCCHH---------HEEEcCCHHHHHHHHHHHhcC------------------CCC-EEEEeCCCHHHHH
Confidence            466777888887664         589999999998887775411                  012 3556666666667


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEA  282 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~  282 (297)
                      ..+...|++++.||.++++.+|+++|++
T Consensus       116 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~  143 (353)
T PRK05387        116 VYAGLYGIPYEEIPLDDDFSIDVEDYLR  143 (353)
T ss_pred             HHHHHcCCEEEEeecCCCCCCCHHHHHh
Confidence            7788999999999999899999999863

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=96.76  E-value=0.017  Score=54.46  Aligned_cols=85  Identities=14%  Similarity=0.048  Sum_probs=62.0

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ...+..++.+++++++|.++           .+++++|+++|..++.+.    +.               +.-.|++.+.
T Consensus        85 ~~~l~~~l~~~la~~~g~~~-----------~i~~tsG~~a~~~~~~~l----~~---------------~gd~vi~~~~  134 (397)
T PRK06939         85 TQDLHKELEEKLAKFLGTED-----------AILYSSCFDANGGLFETL----LG---------------KEDAIISDAL  134 (397)
T ss_pred             CcHHHHHHHHHHHHHhCCCc-----------EEEEcChHHHHHHHHHHh----CC---------------CCCEEEEEhh
Confidence            34566778899999999653           344445588887765432    11               1225777889


Q ss_pred             CcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678         249 AHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       249 aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~  288 (297)
                      .|++...++.++|.+++.++.     +|+++|++.|++..
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~  169 (397)
T PRK06939        135 NHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEAK  169 (397)
T ss_pred             hhHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhhh
Confidence            999999999999998887765     58999999987644

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=96.75  E-value=0.007  Score=56.97  Aligned_cols=84  Identities=11%  Similarity=0.073  Sum_probs=64.3

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ...+++++.+|.+++         .-++|+|+++++...+.+.    ..               +.-.|++..-++....
T Consensus        75 ~lr~~ia~~~~~~~~---------~i~~t~G~~~~l~~~~~~~----~~---------------~gd~vli~~P~y~~~~  126 (371)
T PRK05166         75 ALREAIAARTGVPAD---------RIILGNGSEDLIAVICRAV----LR---------------PGDRVVTLYPSFPLHE  126 (371)
T ss_pred             HHHHHHHHHhCcCHH---------HEEEcCCHHHHHHHHHHHh----cC---------------CCCEEEEcCCChHHHH
Confidence            466778888888754         5889999999876555432    11               1124556777777888


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ..++..|++++.||+++++.+|+++|++.+++
T Consensus       127 ~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~  158 (371)
T PRK05166        127 DYPTMMGARVERVTVTPDLGFDLDALCAAVAR  158 (371)
T ss_pred             HHHHHcCCeEEEeecCCCCCCCHHHHHHhhhc
Confidence            89999999999999998899999999988865

>PLN02187 rooty/superroot1

Probab=96.74  E-value=0.03  Score=54.53  Aligned_cols=99  Identities=8%  Similarity=0.111  Sum_probs=70.0

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|...+....+.+.+.+|+.+..|++-+       ...-++|+|+++++..++.+.-+                   +.-
T Consensus       103 ~Y~~~~G~~~lR~aiA~~~~~~~~~~~~-------~~~I~it~G~~~al~~~~~~l~~-------------------pGd  156 (462)
T PLN02187        103 SYGPGAGILPARRAVADYMNRDLPHKLT-------PEDIFLTAGCNQGIEIVFESLAR-------------------PNA  156 (462)
T ss_pred             CCCCCCChHHHHHHHHHHHHHhcCCCCC-------cccEEEeCCHHHHHHHHHHHhcC-------------------CCC
Confidence            3444445566777788888877665421       12588999999998887775311                   111


Q ss_pred             EEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE  286 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~  286 (297)
                      .|+++.-+.+.....+...|++++.++..  +++.+|+++|++++++
T Consensus       157 ~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~  203 (462)
T PLN02187        157 NILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADE  203 (462)
T ss_pred             EEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCC
Confidence            35566677777788889999999999984  4689999999987743

>PRK07550 hypothetical protein; Provisional

Probab=96.74  E-value=0.028  Score=53.07  Aligned_cols=99  Identities=14%  Similarity=-0.035  Sum_probs=71.6

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|...+...+++..+.+++.+..|.+-+.       ..-++|+|+++++.+++.+..    .               +.-
T Consensus        62 ~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-------~~i~~t~G~~~al~~~~~~l~----~---------------~gd  115 (386)
T PRK07550         62 LYGPVEGLPELREAYAAHYSRLYGAAISP-------EQVHITSGCNQAFWAAMVTLA----G---------------AGD  115 (386)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhCCCCCc-------ceEEEecCcHHHHHHHHHHhc----C---------------CCC
Confidence            34344567788888999999887754221       258889999998877665531    0               111


Q ss_pred             EEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                      .|++++-++......+...|++++.|+.|+  .+.+|++.|++.+++
T Consensus       116 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~  162 (386)
T PRK07550        116 EVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITP  162 (386)
T ss_pred             EEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcc
Confidence            466777777777778888999999999974  467899999998864

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=96.73  E-value=0.025  Score=53.62  Aligned_cols=116  Identities=18%  Similarity=0.157  Sum_probs=74.1

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCC-ccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLP-KEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~-~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      +.+.+...++ ....|........+-+.+.+|+.+..|++ -+.      .-.-++|+|++++...++.+.-+       
T Consensus        47 ~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~------~~~i~it~G~~~al~~~~~~l~~-------  112 (396)
T PRK09147         47 IKDALAANLD-GLASYPTTAGLPALREAIAAWLERRYGLPALDP------ATQVLPVNGSREALFAFAQTVID-------  112 (396)
T ss_pred             HHHHHHHHhh-hhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCc------cceEEECCChHHHHHHHHHHHcC-------
Confidence            4444444443 22334444445567777888888888865 210      01467789999988766664311       


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                         +     +.. .-.|++.+-.-.....++..+|.+++.||+++  ++.+|+++|++.+.+
T Consensus       113 ---~-----~~~-gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~  165 (396)
T PRK09147        113 ---R-----DGP-GPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWA  165 (396)
T ss_pred             ---C-----CCC-CCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHhh
Confidence               0     000 22455666666667888999999999999974  368999999887753

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=96.72  E-value=0.017  Score=54.02  Aligned_cols=81  Identities=17%  Similarity=0.160  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH  250 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH  250 (297)
                      .+..++.+++++++|.+           ..+++++|+++++.++.+.    ..               +.-.|++++..|
T Consensus        84 ~~~~~l~~~la~~~~~~-----------~~i~~~~g~~~~~~~l~~~----~~---------------~gd~V~~~~~~~  133 (385)
T PRK05958         84 PAHEALEEELAEWFGAE-----------RALLFSSGYAANLAVLTAL----AG---------------KGDLIVSDKLNH  133 (385)
T ss_pred             HHHHHHHHHHHHHhCCC-----------cEEEECcHHHHHHHHHHHh----CC---------------CCCEEEEeCccC
Confidence            34556777888888843           3788888999998766432    11               112566788999


Q ss_pred             chHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         251 SSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       251 ~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...++.+.|..++.+|.     .|++.|++.++.
T Consensus       134 ~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~  164 (385)
T PRK05958        134 ASLIDGARLSRARVRRYPH-----NDVDALEALLAK  164 (385)
T ss_pred             HHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHh
Confidence            9999999999999988876     388999998865

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=96.67  E-value=0.027  Score=52.56  Aligned_cols=83  Identities=10%  Similarity=0.111  Sum_probs=59.8

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      ..+.+++.+|.+++         .-++|+|+++++..++.+.    +.              ... .|+++.-+......
T Consensus        64 lr~~ia~~~~~~~~---------~i~it~G~~~~l~~~~~~l----~~--------------~gd-~Vlv~~p~y~~~~~  115 (351)
T PRK14807         64 LREELARYCSVVPT---------NIFVGNGSDEIIHLIMLAF----IN--------------KGD-VVIYPHPSFAMYSV  115 (351)
T ss_pred             HHHHHHHHhCCCcc---------cEEEecCHHHHHHHHHHHh----cC--------------CCC-EEEEeCCChHHHHH
Confidence            34455556677653         5789999999887666542    11              012 34556666666777


Q ss_pred             HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         256 AGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...|.+++.|++|+++.+|++.|+++++.
T Consensus       116 ~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~  146 (351)
T PRK14807        116 YSKIAGAVEIPVKLKEDYTYDVGSFIKVIEK  146 (351)
T ss_pred             HHHHcCCeEEEeecCCCCCCCHHHHHHHhhc
Confidence            8899999999999998899999999998864

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=96.67  E-value=0.03  Score=52.76  Aligned_cols=93  Identities=11%  Similarity=0.122  Sum_probs=66.5

Q ss_pred             chhhHHHHHHHHHHHHHcC----CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         167 PACTELEVVMLDWLGKMLD----LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg----~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      +....+.+.+.+|+.+..|    .+++         .-++|+|+++++..++.+.-   ..               ++-.
T Consensus        66 ~G~~~Lr~aia~~~~~~~~~~~~v~~~---------~I~it~Ga~~al~~~~~~~~---~~---------------g~~~  118 (374)
T PRK02610         66 GGHEALKQAIAEYVNESAAGSSQITPA---------NISVGNGSDELIRSLLIATC---LG---------------GEGS  118 (374)
T ss_pred             CchHHHHHHHHHHhCccccccCCCCHH---------HEEEcCChHHHHHHHHHHHc---CC---------------CCCe
Confidence            4456677777777776643    3332         57889999998876655421   00               1113


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      |++.+-+......+++.+|++++.||+|+ ++.+|+++|++++++
T Consensus       119 Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~  163 (374)
T PRK02610        119 ILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQ  163 (374)
T ss_pred             EEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHh
Confidence            55666777788889999999999999986 589999999999864

>PRK08363 alanine aminotransferase; Validated

Probab=96.64  E-value=0.02  Score=54.43  Aligned_cols=98  Identities=9%  Similarity=0.000  Sum_probs=69.9

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |...+....++..+.+|+....|.+-+.       ..-++|+|+|+++..++.+.    ..               +.-.
T Consensus        66 Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------~~i~it~G~~~al~~~~~~~----~~---------------~gd~  119 (398)
T PRK08363         66 YGPSEGLPELREAIVKREKRKNGVDITP-------DDVRVTAAVTEALQLIFGAL----LD---------------PGDE  119 (398)
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCCCh-------hhEEEeCCHHHHHHHHHHHh----CC---------------CCCE
Confidence            3344566778888888888776643210       25789999999988777653    11               1124


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEe-eCCC-CCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGL-PADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~V-p~d~-~~~md~~~L~~~i~~  286 (297)
                      |++++-++.+...++..+|..++.+ +.++ .+.+|++.|++.+.+
T Consensus       120 Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~  165 (398)
T PRK08363        120 ILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITE  165 (398)
T ss_pred             EEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCc
Confidence            6777888999999999999888887 5654 457999999887753

>PRK08068 transaminase; Reviewed

Probab=96.62  E-value=0.047  Score=51.67  Aligned_cols=113  Identities=8%  Similarity=0.019  Sum_probs=76.5

Q ss_pred             HHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCC-CeEEcCChhHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKG-GGVIQGTASEATLVALLGAKAKTMQRV  225 (297)
Q Consensus       148 l~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~-~G~~tsGGT~anl~Al~~AR~~~~~~~  225 (297)
                      +.+.+...++.. ...|...+....+.+.+.+|+.+..|.+-+       .. .-++|+||+++...++.+-    ..  
T Consensus        50 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~-------~~~~i~it~G~~~~l~~~~~~~----~~--  116 (389)
T PRK08068         50 IVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLD-------PETEVAILFGGKAGLVELPQCL----MN--  116 (389)
T ss_pred             HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------CCccEEEcCCcHHHHHHHHHHh----CC--
Confidence            344554444432 123333445667888888888877786422       01 3678999998887654431    11  


Q ss_pred             HhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         226 KEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       226 ~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                                   +.-.|++..-+++....++...|++++.||+++  .+.+|+++|++.+.+
T Consensus       117 -------------~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~  166 (389)
T PRK08068        117 -------------PGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVAE  166 (389)
T ss_pred             -------------CCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhccc
Confidence                         112466788889899999999999999999985  468899999988853

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=96.61  E-value=0.047  Score=51.47  Aligned_cols=94  Identities=12%  Similarity=0.111  Sum_probs=67.5

Q ss_pred             hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      +...+.+.+.+|+.+..|.+...      ...-++|+|++++...++.+.    ..               +.-.|++..
T Consensus        68 G~~~lr~~ia~~~~~~~~~~~~~------~~~vi~t~G~~~~l~~~~~~~----~~---------------~gd~vlv~~  122 (383)
T TIGR03540        68 GMLAYRQAVADWYKRRFGVELDP------ETEVLSLIGSKEGIAHIPLAF----VN---------------PGDIVLVPD  122 (383)
T ss_pred             CCHHHHHHHHHHHHHhhCCCCCC------CCeEEECCCcHHHHHHHHHHh----CC---------------CCCEEEEeC
Confidence            34567788889999888875320      012567899999887766542    11               112566777


Q ss_pred             CCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         248 QAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       248 ~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                      -++.....++..+|.+++.||+++  .+.+|+++|++++.+
T Consensus       123 P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~  163 (383)
T TIGR03540       123 PGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAK  163 (383)
T ss_pred             CCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhccc
Confidence            788888889999999999999974  357899999988854

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=96.59  E-value=0.013  Score=58.06  Aligned_cols=130  Identities=6%  Similarity=0.107  Sum_probs=80.4

Q ss_pred             HHHHhhcCCCCCCChHHHHH-HHHHHHHHHHHHHhhhhhcchhhhhccccC-CCCCCChHHHHHHHHHHHHHHHHHHHhc
Q psy1678           5 IHKKIKNGSIIMGDVNEFKD-FAKAMVDYVGNYLENIRDRYVQLQRFSQMG-SNIMGDVNEFKDFAKAMVDYVGNYLENI   82 (297)
Q Consensus         5 ~~~~~~~~~~~~~~~~~f~~-~~~~~vd~i~~y~~~~~~~~v~~~v~p~l~-~~~p~~~e~f~~~l~~v~d~i~~~~~~~   82 (297)
                      +.+.|+.-+...-+...|.+ ..+.++||+++|+..++  +|+++++|+++ ...|.++....+.++++.+.+.+     
T Consensus        10 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-----   82 (522)
T TIGR03799        10 LYRIFTVPEAPDSTLGRIEQKISQNLAGFLQEHIVAIE--KPLSEIEKDFSSAEIPEQPTFVSEHTQFLLDKLVA-----   82 (522)
T ss_pred             hhhccCCCCCCchHHHHHHHHHHHHHHHHHHhhhhccC--CCchhhhhcccccCCCCCCCChHHHHHHHHHHHHc-----
Confidence            44445433333223333433 46788999999998776  99999999974 55778888888888887777765     


Q ss_pred             CCCCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCC--CHHHHHHHHHHHhcc
Q psy1678          83 RDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTAN--SYPAIVADILSDSIA  157 (297)
Q Consensus        83 ~~~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~--~~~svl~d~l~~~lN  157 (297)
                         ..+++.+|.++ ..++..+|-    .-..+.++...+       + +..+.|..||.  ..+..+.+|+..++.
T Consensus        83 ---~~~~~~hP~f~-g~~~~~~p~----~~~~l~~l~~~l-------N-~n~~~~~~spa~t~lE~~v~~wl~~l~~  143 (522)
T TIGR03799        83 ---HSVHTASPSFI-GHMTSALPY----FMLPLSKLMVAL-------N-QNLVKIETSKAFTPLERQVLGMMHHLVY  143 (522)
T ss_pred             ---CCCCCCCCCeE-EeccCCCch----HHHHHHHHHHHh-------c-CCcceeecCcchHHHHHHHHHHHHHHhc
Confidence               45667788887 555543331    111133332222       2 22455555553  566777888888763

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK06348 aspartate aminotransferase; Provisional

Probab=96.57  E-value=0.043  Score=51.89  Aligned_cols=115  Identities=16%  Similarity=0.091  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHH
Q psy1678         145 PAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQR  224 (297)
Q Consensus       145 ~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~  224 (297)
                      ..++..++....+. ...|....+...+.+.+.+|+.+..|++-+.       ..-++|+|+++++..++.+.    .. 
T Consensus        45 ~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~-------~~i~it~G~~~al~~~~~~~----~~-  111 (384)
T PRK06348         45 ESIINAAFEDAKKG-HTRYTDSGGDVELIEEIIKYYSKNYDLSFKR-------NEIMATVGACHGMYLALQSI----LD-  111 (384)
T ss_pred             HHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCh-------hhEEEcCChHHHHHHHHHHh----cC-
Confidence            34444444433222 2234433444578888889998877764321       25889999999988777764    11 


Q ss_pred             HHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678         225 VKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE  286 (297)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~  286 (297)
                                    +.-.|+++.-.+.....++..+|..++.||++  +++.+|+++|++.+++
T Consensus       112 --------------~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~  161 (384)
T PRK06348        112 --------------PGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITS  161 (384)
T ss_pred             --------------CCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCc
Confidence                          11246678888888999999999999999974  3567999999988853

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=96.56  E-value=0.017  Score=55.17  Aligned_cols=91  Identities=13%  Similarity=0.040  Sum_probs=61.3

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      +....+|..+.+++++++|.+..          -+++++||+++..++.+.    +.               +.-.|+++
T Consensus        67 ~~~~~~e~~~~~~la~~~g~~~~----------~i~~~sgt~al~~~l~~l----~~---------------~gd~Vl~~  117 (416)
T PRK00011         67 EYVDVVEQLAIDRAKELFGAEYA----------NVQPHSGSQANAAVYFAL----LK---------------PGDTILGM  117 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCce----------eeecCCchHHHHHHHHHh----cC---------------CCCEEEEe
Confidence            45667888888999999999752          345456788887666543    11               11146677


Q ss_pred             CCCcchHH---HHH--HhcCCceEEeeCC-CCCCcCHHHHHHHHHH
Q psy1678         247 DQAHSSVE---RAG--LLGGVTIRGLPAD-DSYKLRGDALEAAIEE  286 (297)
Q Consensus       247 ~~aH~Si~---Kaa--~~lg~~v~~Vp~d-~~~~md~~~L~~~i~~  286 (297)
                      ..+|.+..   ...  .-.|.+++.+++| +++.+|+++|+++|++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~  163 (416)
T PRK00011        118 DLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALE  163 (416)
T ss_pred             ccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHh
Confidence            77776532   111  2235678888888 4699999999999965

>KOG0630|consensus

Probab=96.55  E-value=0.011  Score=56.76  Aligned_cols=120  Identities=19%  Similarity=0.235  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCC----CCceEEEec
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDI----IANLVGYCS  246 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~----~~~~~i~~s  246 (297)
                      .|--.+-.|+..||.|-.+....+...  ..|.-.-.-++.-|++.|-....     .|....+++.    ...+++|+|
T Consensus       165 ~i~Gdanh~fgnLF~FAdsqiycsdPa--asfhadiadai~haVkLAikar~-----~~dhs~eG~~afaa~aaPt~YiS  237 (838)
T KOG0630|consen  165 SISGDANHVFGNLFHFADSQIYCSDPA--ASFHADIADAIGHAVKLAIKARC-----GGDHSLEGGIAFAALAAPTFYIS  237 (838)
T ss_pred             hhccchHHHHHHHHhhcccccccCCch--hhhhhhhhhHHHHHHHhhhhhcc-----CCccccccccchHhhcCceEEEc
Confidence            344456789999999876422211111  22222222333444444432211     1111222221    246799999


Q ss_pred             CCCcchH-HHHHHhcCCc---eEEeeC-CC---CCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678         247 DQAHSSV-ERAGLLGGVT---IRGLPA-DD---SYKLRGDALEAAIEEDLKKGKIPFYI  297 (297)
Q Consensus       247 ~~aH~Si-~Kaa~~lg~~---v~~Vp~-d~---~~~md~~~L~~~i~~~~~~G~~Pf~v  297 (297)
                      +..|.-. .-+|+-+|+.   +..++- |.   .||||...+++.|++|.++|+.|+++
T Consensus       238 ~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLil  296 (838)
T KOG0630|consen  238 EALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLIL  296 (838)
T ss_pred             ccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEE
Confidence            9999876 4588999993   333322 22   46999999999999999999999875

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=96.52  E-value=0.033  Score=53.15  Aligned_cols=114  Identities=21%  Similarity=0.211  Sum_probs=83.0

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +-+.+..+++.....+..+.+..++-+.+.+++.+..|+.-..      ...-++|+|++++++.++.+--+.       
T Consensus        46 i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~------~~eiivt~Ga~~al~~~~~a~~~p-------  112 (393)
T COG0436          46 IIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDP------EEEIIVTAGAKEALFLAFLALLNP-------  112 (393)
T ss_pred             HHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCeEEEeCCHHHHHHHHHHHhcCC-------
Confidence            3444444444322144455667788888999999998854221      124899999999999998874221       


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC---CCCCcCHHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD---DSYKLRGDALEAAIEE  286 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d---~~~~md~~~L~~~i~~  286 (297)
                                 .. .|++++-.-.+......++|..++.||++   .++++|++.|+++|.+
T Consensus       113 -----------GD-eVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~  162 (393)
T COG0436         113 -----------GD-EVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP  162 (393)
T ss_pred             -----------CC-EEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc
Confidence                       12 35567777788888999999999999986   4899999999999987

>KOG0628|consensus

Probab=96.51  E-value=0.007  Score=57.66  Aligned_cols=109  Identities=12%  Similarity=0.135  Sum_probs=81.6

Q ss_pred             HHHHHHHHHhhhhhcchhhhh-ccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhccCCCCCCCC
Q psy1678          29 MVDYVGNYLENIRDRYVQLQR-FSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDT  107 (297)
Q Consensus        29 ~vd~i~~y~~~~~~~~v~~~v-~p~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~lP~~  107 (297)
                      +.||..+-.+.=---.|.|-. ++.+|+.+|..+|+|++++.++...|.+        ++++|++|.+. +.|+..    
T Consensus        17 IadY~e~ir~r~v~P~v~PGYl~~llP~~aPe~pE~~~~Il~D~ekiI~P--------GitHw~hP~fh-Ayfpa~----   83 (511)
T KOG0628|consen   17 IADYLENIRKRRVLPDVKPGYLRDLLPSKAPEKPESWEDILGDLEKIIMP--------GITHWQHPHFH-AYFPAG----   83 (511)
T ss_pred             HHHHHHhhhccCCCCCCCcchhhhhCCCCCCCChhhHHHHHHHHHHHccC--------CCcccCCCcee-eEccCc----
Confidence            456665555443334567755 5779999999999999999999999987        89999999877 666654    


Q ss_pred             CCCHHHHHHHHHHHHcCCCCCCCCccccccCCCC--CCHHHHHHHHHHHhccc
Q psy1678         108 PDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA--NSYPAIVADILSDSIAC  158 (297)
Q Consensus       108 g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~--~~~~svl~d~l~~~lN~  158 (297)
                       .++..+++++.....      + ---|.|..||  ++++-++.|||..+++.
T Consensus        84 -~s~~siladmLs~~i------~-~vGFtW~ssPa~TELE~ivmDWL~kml~L  128 (511)
T KOG0628|consen   84 -NSYPSILADMLSGGI------G-CVGFTWASSPACTELEVIVMDWLGKMLGL  128 (511)
T ss_pred             -cchHHHHHHHHhccc------c-cccceeecCcchHHHHHHHHHHHHHHhcC
Confidence             688999999865421      1 1246677777  46778889999987765

>KOG2040|consensus

Probab=96.50  E-value=0.012  Score=58.36  Aligned_cols=101  Identities=13%  Similarity=0.077  Sum_probs=76.8

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEc-CChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQ-GTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~t-sGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      +.+-.+|=.++-.|||++-|++.           -.|. ..|...-..+|.+.|.+...+    |.       ..|-+.+
T Consensus       577 aqGY~~lf~~Le~~Lc~iTG~D~-----------~s~QPNsGA~GEYaGL~~IRaY~~~k----ge-------~hRnvCl  634 (1001)
T KOG2040|consen  577 AQGYQQLFTELEKDLCEITGFDS-----------FSLQPNSGAQGEYAGLRVIRAYLESK----GE-------GHRNVCL  634 (1001)
T ss_pred             HhhHHHHHHHHHHHhheeecccc-----------eeecCCCCcccchhhHHHHHHHHHhc----cC-------CcceeEE
Confidence            34445566667779999999974           2222 345566677888888875432    21       2355677


Q ss_pred             ecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678         245 CSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       245 ~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~  288 (297)
                      .+-.+|-....+|.+.|++|+.|.+|.+|-+|..+|+++-++-.
T Consensus       635 IPvSAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~  678 (1001)
T KOG2040|consen  635 IPVSAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHK  678 (1001)
T ss_pred             EeecccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhh
Confidence            78899999999999999999999999999999999999887654

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=96.50  E-value=0.042  Score=56.01  Aligned_cols=83  Identities=11%  Similarity=0.115  Sum_probs=63.2

Q ss_pred             HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678         177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA  256 (297)
Q Consensus       177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka  256 (297)
                      -+..|+++|.+.+          -.+|.|.|-||..++.++-.                   +.-.|++...+|-|+..|
T Consensus       201 e~~aA~~fgAd~t----------yfvvNGTS~~n~av~~a~~~-------------------~Gd~VLvdRN~HKSv~~a  251 (713)
T PRK15399        201 EEYIARTFGAEQS----------YIVTNGTSTSNKIVGMYAAP-------------------AGSTLLIDRNCHKSLAHL  251 (713)
T ss_pred             HHHHHHHhCCCcE----------EEEeCChHHHHHHHHHHhcC-------------------CCCEEEeecccHHHHHHH
Confidence            3577999999875          56789999999988887521                   112577899999999999


Q ss_pred             HHhcCCceEEeeCC--CC---CCcCH-----HHHHHHHHHHH
Q psy1678         257 GLLGGVTIRGLPAD--DS---YKLRG-----DALEAAIEEDL  288 (297)
Q Consensus       257 a~~lg~~v~~Vp~d--~~---~~md~-----~~L~~~i~~~~  288 (297)
                      +.+.|+..+.++..  +.   |.+++     +.++++|++.-
T Consensus       252 Lilsga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p  293 (713)
T PRK15399        252 LMMSDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATT  293 (713)
T ss_pred             HHHcCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCC
Confidence            99999988887654  22   34555     88888887643

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=96.48  E-value=0.018  Score=54.48  Aligned_cols=83  Identities=12%  Similarity=0.052  Sum_probs=62.1

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+.+++.+|.+++         .-++|+|+++++..++.+.    ..               +.-.|++++-......
T Consensus        90 ~lr~~ia~~~~~~~~---------~I~~t~Ga~~~i~~~~~~~----~~---------------~gd~Vlv~~P~y~~y~  141 (380)
T PLN03026         90 RLRAALAEDSGLESE---------NILVGCGADELIDLLMRCV----LD---------------PGDKIIDCPPTFGMYV  141 (380)
T ss_pred             HHHHHHHHHhCcChh---------hEEEcCCHHHHHHHHHHHh----cC---------------CCCEEEEcCCChHHHH
Confidence            466778888888754         5789999999987766542    11               1113555656666667


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      ..++..|++++.+|.++++.+|++.|+++++
T Consensus       142 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~  172 (380)
T PLN03026        142 FDAAVNGAEVIKVPRTPDFSLDVPRIVEAVE  172 (380)
T ss_pred             HHHHHcCCEEEEeecCCCCCcCHHHHHHHHh
Confidence            7888899999999998889999999998884

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=96.46  E-value=0.028  Score=53.31  Aligned_cols=93  Identities=23%  Similarity=0.090  Sum_probs=65.2

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ....+.++.+.+++++|.+.+         ..+||+|||++|..|+.++|...                .++.+++....
T Consensus        77 ~~~~~~~l~~~l~~~~~~~~~---------~v~~~~sgsea~~~al~~~~~~~----------------~~~~ii~~~~~  131 (413)
T cd00610          77 YNEPAVELAELLLALTPEGLD---------KVFFVNSGTEAVEAALKLARAYT----------------GRKKIISFEGA  131 (413)
T ss_pred             CCHHHHHHHHHHHHhCCCCCC---------EEEEcCcHHHHHHHHHHHHHHHc----------------CCCeEEEECCC
Confidence            456777888899999984322         48899999999999999998641                12335556667


Q ss_pred             CcchHHHHHHhcC------------CceEEeeCCC------CCCcCHHHHHHHHHH
Q psy1678         249 AHSSVERAGLLGG------------VTIRGLPADD------SYKLRGDALEAAIEE  286 (297)
Q Consensus       249 aH~Si~Kaa~~lg------------~~v~~Vp~d~------~~~md~~~L~~~i~~  286 (297)
                      -|.+..-+..+.+            .+++.+|.+.      +...|++.|++.+++
T Consensus       132 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  187 (413)
T cd00610         132 YHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEE  187 (413)
T ss_pred             cCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhc
Confidence            7777665554432            2467777763      345588989888864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK09105 putative aminotransferase; Provisional

Probab=96.40  E-value=0.017  Score=54.48  Aligned_cols=80  Identities=18%  Similarity=0.074  Sum_probs=62.3

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +.+-+++.+|.+++         .-++|+|+++++..++.+.    ..               +.-.|++++-+|+....
T Consensus        83 Lr~aia~~~~v~~e---------~I~it~Gs~~ai~~~~~~l----~~---------------~gd~Vli~~P~y~~~~~  134 (370)
T PRK09105         83 LRTLFAAQEGLPAD---------HVMAYAGSSEPLNYAVLAF----TS---------------PTAGLVTADPTYEAGWR  134 (370)
T ss_pred             HHHHHHHHhCcChh---------hEEEcCChHHHHHHHHHHH----cC---------------CCCEEEEeCCChHHHHH
Confidence            44556777888764         5889999999988777653    11               11246667788888999


Q ss_pred             HHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678         256 AGLLGGVTIRGLPADDSYKLRGDALEAA  283 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~  283 (297)
                      ++...|.+++.||.++++.+|++.|++.
T Consensus       135 ~~~~~g~~~~~v~~~~~~~~d~~~l~~~  162 (370)
T PRK09105        135 AADAQGAPVAKVPLRADGAHDVKAMLAA  162 (370)
T ss_pred             HHHHcCCeEEEecCCCCCCCCHHHHHhc
Confidence            9999999999999998899999999765

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=96.39  E-value=0.051  Score=51.48  Aligned_cols=117  Identities=17%  Similarity=0.140  Sum_probs=75.1

Q ss_pred             HHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCC-CCeEEcCChhHHHHHHHHHHHHHHHHHH
Q psy1678         147 IVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGK-GGGVIQGTASEATLVALLGAKAKTMQRV  225 (297)
Q Consensus       147 vl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~-~~G~~tsGGT~anl~Al~~AR~~~~~~~  225 (297)
                      .+.+.+...+. ....|....+...+-+.+.+|+.+..|++...     .. ..-++|+|++++...++.+..+      
T Consensus        45 ~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~-----~~~~~i~it~Ga~~al~~~~~~l~~------  112 (393)
T TIGR03538        45 FVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRFDLPTGV-----DPERHVLPVNGTREALFAFAQAVIN------  112 (393)
T ss_pred             HHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccC-----CCCceEEECCCcHHHHHHHHHHHcC------
Confidence            34444444433 22234333334567777888998887876210     01 1367899999988776665311      


Q ss_pred             HhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC--CCcCHHHHHHHHHH
Q psy1678         226 KEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEE  286 (297)
Q Consensus       226 ~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~--~~md~~~L~~~i~~  286 (297)
                        .|         ....|++.+-..+.....+..+|.+++.||++++  +.+|+++|++++.+
T Consensus       113 --~g---------d~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~  164 (393)
T TIGR03538       113 --PG---------QAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWR  164 (393)
T ss_pred             --CC---------CcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhh
Confidence              01         1223566666777778888999999999999743  57899999988754

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=96.39  E-value=0.016  Score=54.54  Aligned_cols=82  Identities=7%  Similarity=0.082  Sum_probs=62.3

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +.+.+++.+|.+++         .-++|+|+++++..++.+.-    .               +.-.|++.+-+......
T Consensus        69 Lr~aia~~~~~~~~---------~I~vt~Gs~e~i~~~~~~l~----~---------------~gd~vlv~~P~y~~~~~  120 (366)
T PRK01533         69 LRQTIANKLHVKME---------QVLCGSGLDEVIQIISRAVL----K---------------AGDNIVTAGATFPQYRH  120 (366)
T ss_pred             HHHHHHHHhCCCcc---------eEEECCCHHHHHHHHHHHhc----C---------------CCCEEEEcCCcHHHHHH
Confidence            55566777788764         58899999999887766531    1               11146667778888899


Q ss_pred             HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         256 AGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...|++++.||.+ ++.+|+++|++++++
T Consensus       121 ~~~~~g~~v~~v~~~-~~~~d~~~l~~~~~~  150 (366)
T PRK01533        121 HAIIEGCEVKEVALN-NGVYDLDEISSVVDN  150 (366)
T ss_pred             HHHHcCCEEEEeecC-CCCcCHHHHHHHhCc
Confidence            999999999999997 457999999988754

>PLN02724 Molybdenum cofactor sulfurase

Probab=96.38  E-value=0.017  Score=60.17  Aligned_cols=127  Identities=10%  Similarity=-0.046  Sum_probs=77.4

Q ss_pred             cccccCCCCCCHHHHHHHHHHHhcc---cccc-ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhH
Q psy1678         133 KFHAYFPTANSYPAIVADILSDSIA---CIGF-TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASE  208 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl~d~l~~~lN---~n~~-~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~  208 (297)
                      .||.|-.+++..+..+.+.+..++.   .|.. .+..+..++.+-.++.+.+++++|.++..       ..-+||+|+|+
T Consensus        36 iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~-------~~VvFtsnaT~  108 (805)
T PLN02724         36 VYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSD-------YACVFTSGATA  108 (805)
T ss_pred             EeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccc-------eEEEEeCChHH
Confidence            4888876655444555555544332   2222 22334444544556899999999996531       13699999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHh---cCCceEEeeCC--------CCCCcCH
Q psy1678         209 ATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLL---GGVTIRGLPAD--------DSYKLRG  277 (297)
Q Consensus       209 anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~---lg~~v~~Vp~d--------~~~~md~  277 (297)
                      |+.+.....     .        +.     +.-.|+++...|.|+.-...+   .|+.++.||++        +.+.++.
T Consensus       109 alnlva~~l-----~--------~~-----~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~  170 (805)
T PLN02724        109 ALKLVGETF-----P--------WS-----SESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVV  170 (805)
T ss_pred             HHHHHHHHC-----C--------CC-----CCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhcccccccccccccc
Confidence            987653321     0        10     112466788999888744333   48899999987        4555654


Q ss_pred             --HHHHHHH
Q psy1678         278 --DALEAAI  284 (297)
Q Consensus       278 --~~L~~~i  284 (297)
                        ++|++.+
T Consensus       171 ~~~~l~~~~  179 (805)
T PLN02724        171 KSRGLQRRN  179 (805)
T ss_pred             chhhhhhhh
Confidence              6666654

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=96.38  E-value=0.038  Score=53.88  Aligned_cols=89  Identities=22%  Similarity=0.194  Sum_probs=63.0

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|..++...++|+.+.    +++|..           ..++|+|||+|+..++.+.    +.              ... 
T Consensus        73 ~Y~~~~g~~~Lreaia----~~~~~~-----------~vv~t~ggt~A~~~~~~al----l~--------------pGD-  118 (460)
T PRK13238         73 AYAGSRSYYRLEDAVK----DIFGYP-----------YTIPTHQGRAAEQILFPVL----IK--------------KGD-  118 (460)
T ss_pred             ccCCCCCHHHHHHHHH----HHhCCC-----------cEEECCCHHHHHHHHHHHh----CC--------------CCC-
Confidence            5677777778887554    555653           3799999999999886653    11              123 


Q ss_pred             EEEecCCCcchHHHH-HHhcCCceEEeeCCC----------CCCcCHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERA-GLLGGVTIRGLPADD----------SYKLRGDALEAAIEE  286 (297)
Q Consensus       242 ~i~~s~~aH~Si~Ka-a~~lg~~v~~Vp~d~----------~~~md~~~L~~~i~~  286 (297)
                       |+.+ ..||...++ ..+.|..++.||+++          .|.+|+++|++.|.+
T Consensus       119 -Vii~-~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~  172 (460)
T PRK13238        119 -VVPS-NYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEE  172 (460)
T ss_pred             -EEcc-CCcccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhh
Confidence             3344 457766554 567899999999863          245999999999975

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=96.32  E-value=0.071  Score=54.43  Aligned_cols=83  Identities=10%  Similarity=0.112  Sum_probs=63.1

Q ss_pred             HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678         177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA  256 (297)
Q Consensus       177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka  256 (297)
                      -+..|+++|.+.+          -.+|.|.|-||..++.++-    .               +.-.|++...+|-|+..|
T Consensus       201 e~~AA~~fgAd~t----------yfvvNGTS~~n~av~~a~~----~---------------~Gd~VLvdRN~HKSv~ha  251 (714)
T PRK15400        201 EEYIARVFNADRS----------YMVTNGTSTANKIVGMYSA----P---------------AGSTVLIDRNCHKSLTHL  251 (714)
T ss_pred             HHHHHHHhCCCcE----------EEEeCchHHHHHHHHHHhc----C---------------CCCEEEeecccHHHHHHH
Confidence            3578999999875          5678999999998777641    1               112577899999999999


Q ss_pred             HHhcCCceEEeeCC--CC---CCcC-----HHHHHHHHHHHH
Q psy1678         257 GLLGGVTIRGLPAD--DS---YKLR-----GDALEAAIEEDL  288 (297)
Q Consensus       257 a~~lg~~v~~Vp~d--~~---~~md-----~~~L~~~i~~~~  288 (297)
                      ..+.|+..+.++++  +.   |.++     ++.++++|++.-
T Consensus       252 Lilsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p  293 (714)
T PRK15400        252 MMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETP  293 (714)
T ss_pred             HHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCc
Confidence            99999988887654  22   2445     899999997643

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=96.32  E-value=0.052  Score=52.96  Aligned_cols=101  Identities=13%  Similarity=0.134  Sum_probs=68.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      +...+-+.+.+|+.+.+|.+-..     ....-++|+|+++++...+.+-.+                   +.-.|++.+
T Consensus        87 G~~~LR~aiA~~l~~~~~~~~~v-----~~~~Iiit~Ga~~al~~l~~~l~~-------------------pGd~Vlv~~  142 (468)
T PLN02450         87 GLPAFKNALAEFMSEIRGNKVTF-----DPNKLVLTAGATSANETLMFCLAE-------------------PGDAFLLPT  142 (468)
T ss_pred             ChHHHHHHHHHHHHHhhCCCCCc-----ChHHeEEccChHHHHHHHHHHhCC-------------------CCCEEEECC
Confidence            33456677888888876643100     012588899999987766664211                   112455666


Q ss_pred             CCcchHHHHHH-hcCCceEEeeCC--CCCCcCHHHHHHHHHHHHHCCC
Q psy1678         248 QAHSSVERAGL-LGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKGK  292 (297)
Q Consensus       248 ~aH~Si~Kaa~-~lg~~v~~Vp~d--~~~~md~~~L~~~i~~~~~~G~  292 (297)
                      -....+...+. ..|.+++.||++  +.+.+|+++|++++++..++|.
T Consensus       143 P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~  190 (468)
T PLN02450        143 PYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNL  190 (468)
T ss_pred             CCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCC
Confidence            66667777777 489999999985  4678899999999987665553

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=96.29  E-value=0.09  Score=51.23  Aligned_cols=116  Identities=16%  Similarity=0.079  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHhccc---c-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         145 PAIVADILSDSIAC---I-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       145 ~svl~d~l~~~lN~---n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      .......+...+..   . ...+....+...+=..+.+++....|..-+.       ..-++|+|+++|..+.+.+-   
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~-------~~IiiT~G~q~al~l~~~~l---  175 (459)
T COG1167         106 LEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEP-------EQIVITSGAQQALDLLLRLL---  175 (459)
T ss_pred             HHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCc-------CeEEEeCCHHHHHHHHHHHh---
Confidence            34455555555422   2 3344444566667777888888788886431       25889999988877444331   


Q ss_pred             HHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         221 TMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                       .               .+.-.|++-+-+++....+...+|++++.||+|+ ..||+++|++.+++.
T Consensus       176 -~---------------~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~-~G~~~e~le~~~~~~  225 (459)
T COG1167         176 -L---------------DPGDTVLVEDPTYPGALQALEALGARVIPVPVDE-DGIDPEALEEALAQW  225 (459)
T ss_pred             -C---------------CCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCC-CCCCHHHHHHHHhhc
Confidence             1               1223677889999999999999999999999995 579999999998764

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=96.28  E-value=0.054  Score=53.33  Aligned_cols=98  Identities=19%  Similarity=0.216  Sum_probs=70.6

Q ss_pred             CchhhHHHHHHHHHHHHHcC----CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         166 SPACTELEVVMLDWLGKMLD----LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg----~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      ..+...+-+.+.+|+.+..|    ++++         .-++|+|+++++.+.+.+--+                   +.-
T Consensus        93 ~~G~~~LR~aiA~~l~~~~g~~v~v~pe---------~Ivit~Ga~~al~~l~~~l~~-------------------pGD  144 (496)
T PLN02376         93 YHGLKKFRQAIAHFMGKARGGKVTFDPE---------RVVMSGGATGANETIMFCLAD-------------------PGD  144 (496)
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCcCChh---------hEEEccchHHHHHHHHHHhCC-------------------CCC
Confidence            33445676778888888777    3332         588999999998877765311                   112


Q ss_pred             EEEecCCCcchHHHHHHh-cCCceEEeeCC--CCCCcCHHHHHHHHHHHHHCC
Q psy1678         242 VGYCSDQAHSSVERAGLL-GGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKG  291 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~~-lg~~v~~Vp~d--~~~~md~~~L~~~i~~~~~~G  291 (297)
                      .|++..-....+...+.. .|++++.||++  +++++|+++|++++++..+.+
T Consensus       145 ~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~  197 (496)
T PLN02376        145 VFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESN  197 (496)
T ss_pred             EEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcC
Confidence            466777788888887774 79999999996  468999999998886654433

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=96.25  E-value=0.073  Score=49.42  Aligned_cols=79  Identities=9%  Similarity=0.151  Sum_probs=57.4

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +.+++++.+|.+++         .-++|+|+++++...+.+     ++     |          + .|+++.-.+..+..
T Consensus        60 lr~~ia~~~~~~~~---------~I~~t~G~~~~l~~~~~~-----~~-----g----------d-~V~v~~P~y~~~~~  109 (337)
T PRK03967         60 LREAIAEFYGLDAE---------NIAVGNGSDELISYLVKL-----FE-----G----------K-HIVITPPTFGMYSF  109 (337)
T ss_pred             HHHHHHHHhCcCcc---------eEEEcCCHHHHHHHHHHH-----hC-----C----------C-eEEEeCCChHHHHH
Confidence            44566666777653         588999999987543322     11     1          1 35566677777778


Q ss_pred             HHHhcCCceEEeeCCCCCCcCHHHHHHHH
Q psy1678         256 AGLLGGVTIRGLPADDSYKLRGDALEAAI  284 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~i  284 (297)
                      ++...|++++.|++++++.+|++.|++.+
T Consensus       110 ~~~~~g~~~~~v~~~~~~~~d~~~l~~~~  138 (337)
T PRK03967        110 YAKLNGIPVIDVPLKEDFTIDGERIAEKA  138 (337)
T ss_pred             HHHHcCCeEEEeecCCCCCcCHHHHHHhc
Confidence            88999999999999988999999998754

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=96.24  E-value=0.025  Score=52.70  Aligned_cols=83  Identities=14%  Similarity=0.094  Sum_probs=57.4

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEE-cCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVI-QGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV  253 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~-tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si  253 (297)
                      ++.+.+++.+|.+++         .-++ |+|+++++..++.+.    ..              ... .|+++.-.++.+
T Consensus        73 ~lr~~ia~~~~~~~~---------~i~~~~~Ga~~~i~~~~~~~----~~--------------~gd-~vlv~~p~y~~~  124 (361)
T PRK00950         73 ELREALSKYTGVPVE---------NIIVGGDGMDEVIDTLMRTF----ID--------------PGD-EVIIPTPTFSYY  124 (361)
T ss_pred             HHHHHHHHHhCCCHH---------HEEEeCCCHHHHHHHHHHHh----cC--------------CCC-EEEEcCCChHHH
Confidence            345566777788653         4667 677777665554432    11              012 355666556666


Q ss_pred             HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         254 ERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       254 ~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      ..++...|++++.+|.++++.+|+++|++.+.
T Consensus       125 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~  156 (361)
T PRK00950        125 EISAKAHGAKPVYAKREEDFSLDVDSVLNAIT  156 (361)
T ss_pred             HHHHHHcCCEEEEeecCCCCCcCHHHHHHHhc
Confidence            77888999999999988888999999998885

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=96.22  E-value=0.058  Score=51.85  Aligned_cols=87  Identities=16%  Similarity=0.076  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      ..+-+.+.+|+..-++-++          .-++|+|++++..+++.+.-+                   +.-.|++.+-+
T Consensus       124 ~~lr~~ia~~~~~~~~~~~----------~Iiit~G~~~al~~~~~~l~~-------------------pgd~Vlv~~P~  174 (431)
T PRK15481        124 PELHAWAARWLRDDCPVAF----------EIDLTSGAIDAIERLLCAHLL-------------------PGDSVAVEDPC  174 (431)
T ss_pred             HHHHHHHHHHHhhccCCcC----------eEEEecCcHHHHHHHHHHhCC-------------------CCCEEEEeCCC
Confidence            3455556666655433222          588999999988777765311                   11145667778


Q ss_pred             cchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         250 HSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       250 H~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .+....++...|++++.||+|++| +|+++|+++++.
T Consensus       175 y~~~~~~~~~~g~~~~~v~~~~~g-~~~~~l~~~~~~  210 (431)
T PRK15481        175 FLSSINMLRYAGFSASPVSVDAEG-MQPEKLERALAQ  210 (431)
T ss_pred             cHHHHHHHHHcCCeEEeeccCCCC-CCHHHHHHHHhc
Confidence            888999999999999999998765 999999998864

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=96.20  E-value=0.069  Score=51.06  Aligned_cols=112  Identities=13%  Similarity=0.108  Sum_probs=74.5

Q ss_pred             HHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         149 ADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       149 ~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      .+.+...++.. ...|........+-+.+.+|+.+..|++-+       ...-++|+|+++++..++.+.-+        
T Consensus        55 ~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~-------~~~I~it~G~~~al~~~~~~l~~--------  119 (409)
T PLN00143         55 EDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLS-------PDDVYLTLGCKHAAEIIIKVLAR--------  119 (409)
T ss_pred             HHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-------HhhEEEecChHHHHHHHHHHHcC--------
Confidence            34444444432 223433344555666788888887776422       12588999999998887665311        


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE  286 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~  286 (297)
                                 +.-.|+++.-+.+.+...+...|.+++.++++  +++++|+++|++++++
T Consensus       120 -----------~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~  169 (409)
T PLN00143        120 -----------PEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADE  169 (409)
T ss_pred             -----------CCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhccc
Confidence                       11245667777888888999999999999985  3568999999887743

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=96.14  E-value=0.066  Score=50.21  Aligned_cols=94  Identities=14%  Similarity=-0.031  Sum_probs=68.3

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      +....+.+.+.+|+.+..|++-+       ...-++|+|+++++..++.+.-+                   +.-.|++.
T Consensus        65 ~g~~~lr~aia~~~~~~~~~~~~-------~~~I~it~G~~~~l~~~~~~~~~-------------------~gd~v~v~  118 (368)
T PRK03317         65 RDAVALRADLAAYLTAQTGVGLT-------VENVWAANGSNEILQQLLQAFGG-------------------PGRTALGF  118 (368)
T ss_pred             CchHHHHHHHHHHhhhhccCCCC-------hhhEEECCCHHHHHHHHHHHhcC-------------------CCCEEEEe
Confidence            34556777788888888776421       12588899999988776665311                   11135556


Q ss_pred             CCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         247 DQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       247 ~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .-+......++...|.+++.+|.++++.+|+++|++++++
T Consensus       119 ~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~  158 (368)
T PRK03317        119 VPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAE  158 (368)
T ss_pred             CCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhc
Confidence            6677777888888999999998888889999999998864

>PRK07681 aspartate aminotransferase; Provisional

Probab=96.14  E-value=0.12  Score=49.01  Aligned_cols=113  Identities=7%  Similarity=0.071  Sum_probs=76.0

Q ss_pred             HHHHHHHhccccc-cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIACIG-FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       148 l~d~l~~~lN~n~-~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      +.+.+...++... ..+. .+....+-+.+.+|+.+..|++-+.      ...-++|+|++++...++.+.    +.   
T Consensus        50 ~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~------~~~I~it~G~~~al~~~~~~~----~~---  115 (399)
T PRK07681         50 VREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNA------DKEVLLLMGSQDGLVHLPMVY----AN---  115 (399)
T ss_pred             HHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCC------CCeEEECCCcHHHHHHHHHHh----CC---
Confidence            4555555554321 1121 2445567777888988887764220      025788999999887766542    11   


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC--CCcCHHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEE  286 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~--~~md~~~L~~~i~~  286 (297)
                                  +.-.|++.+-+++.....+..+|.+++.||+|++  +.+|+++|++++..
T Consensus       116 ------------~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~  165 (399)
T PRK07681        116 ------------PGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIAD  165 (399)
T ss_pred             ------------CCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccc
Confidence                        1124667778899999999999999999999854  57899999888753

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=96.14  E-value=0.059  Score=51.38  Aligned_cols=123  Identities=15%  Similarity=0.066  Sum_probs=72.0

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678         128 HWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS  207 (297)
Q Consensus       128 ~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT  207 (297)
                      .+.+-.|+|.... +.....+.+.+...-...+.....+ .......++-+.+++++|.+.           .+|+++|+
T Consensus        49 ~~~sn~ylgl~~~-p~v~~a~~~~~~~~~~~~~~s~~~~-~~~~~~~~le~~la~~~g~~~-----------~~~~~SG~  115 (406)
T PRK13393         49 VWCSNDYLGMGQH-PAVLAAMHEALDTCGAGAGGTRNIS-GTNHYHVLLEAELADLHGKEA-----------ALLFTSGY  115 (406)
T ss_pred             EeecccccCCCCC-HHHHHHHHHHHHHcCCCCccccccc-CChHHHHHHHHHHHHHhCCCc-----------EEEeCCcH
Confidence            4566668876543 2233333444433211111111111 112233344467788888642           56666678


Q ss_pred             HHHHHHHHH-HHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         208 EATLVALLG-AKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       208 ~anl~Al~~-AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +||..|+.+ ++..                  +.-+|++....|.|+..++...|..++.+|.     .|++.|++.++.
T Consensus       116 ~An~~ai~~l~~~~------------------~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~  172 (406)
T PRK13393        116 VSNWAALSTLGSRL------------------PGCVILSDELNHASMIEGIRHSRAEKRIFRH-----NDPADLERKLSD  172 (406)
T ss_pred             HHHHHHHHHhhcCC------------------CCCEEEEccchhHHHHHHHHHcCCeEEEeCC-----CCHHHHHHHHHh
Confidence            899999985 3210                  1125777888999999999988887777764     377888887764

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=96.09  E-value=0.025  Score=52.74  Aligned_cols=82  Identities=15%  Similarity=0.169  Sum_probs=59.4

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +.+++++.+|.+++         .-++|+|+++++..++.+.    ..               +.-.|+++.-+......
T Consensus        69 lr~~ia~~~~~~~~---------~i~~t~G~~~~l~~~~~~~----~~---------------~gd~v~~~~p~y~~~~~  120 (359)
T PRK03158         69 LRTKVAKHLGVDEE---------QLLFGAGLDEVIQMISRAL----LN---------------PGTNTVMAEPTFSQYRH  120 (359)
T ss_pred             HHHHHHHHhCCCHH---------HEEECCCHHHHHHHHHHHH----hC---------------CCCEEEEcCCCHHHHHH
Confidence            45566777777653         5889999999886544432    11               11246666667777888


Q ss_pred             HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         256 AGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...|.+++.+|++ ++.+|++.|++.+.+
T Consensus       121 ~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~~  150 (359)
T PRK03158        121 NAIIEGAEVREVPLK-DGGHDLEAMLKAIDE  150 (359)
T ss_pred             HHHHcCCeEEEEecC-CCCcCHHHHHHhcCC
Confidence            899999999999998 688999999887743

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=96.09  E-value=0.1  Score=49.54  Aligned_cols=117  Identities=13%  Similarity=0.025  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCC--CccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHH
Q psy1678         146 AIVADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDL--PKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTM  222 (297)
Q Consensus       146 svl~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~--~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~  222 (297)
                      ..+.+.+...+... ...|....+...+=+.+.+|+.+.-+.  .++       .-..++|+|++++...++.+...  .
T Consensus        47 ~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~-------~i~v~iT~Ga~~al~~~~~~l~~--~  117 (396)
T PRK09257         47 RAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAG-------RVATVQTPGGTGALRVGADFLKR--A  117 (396)
T ss_pred             HHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccC-------eEEEEecCCccHHHHHHHHHHHH--h
Confidence            34555555555322 223444445555656667776544322  111       01248999999999888754210  0


Q ss_pred             HHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeC-C-CCCCcCHHHHHHHHHH
Q psy1678         223 QRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPA-D-DSYKLRGDALEAAIEE  286 (297)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~-d-~~~~md~~~L~~~i~~  286 (297)
                      .               +.-.|++.+-+-+....+++.+|++++.||+ + +++.+|+++|++.+++
T Consensus       118 ~---------------pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~  168 (396)
T PRK09257        118 F---------------PDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQ  168 (396)
T ss_pred             C---------------CCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHh
Confidence            0               1124667777888889999999999999998 3 3579999999998874

>PRK06107 aspartate aminotransferase; Provisional

Probab=96.06  E-value=0.12  Score=49.19  Aligned_cols=112  Identities=19%  Similarity=0.121  Sum_probs=72.5

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +.+.+...+......|....+..++...+.+|+.+.+|.+-..       ..-++|+|+++++..++.+.    ..    
T Consensus        51 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-------~~i~~t~G~~~al~~~~~~~----~~----  115 (402)
T PRK06107         51 IKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYAD-------NEITVGGGAKQAIFLALMAT----LE----  115 (402)
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh-------hhEEEeCCHHHHHHHHHHHh----cC----
Confidence            4455555554333334333344567778889999888874211       25889999999988887542    11    


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE  285 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~  285 (297)
                                 +.-.|++++-.++....+....|..++.|++++  .+.+|+++|++.+.
T Consensus       116 -----------~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~  164 (402)
T PRK06107        116 -----------AGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAIT  164 (402)
T ss_pred             -----------CCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcC
Confidence                       112456666666666677777777777888753  46789999888775

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=96.05  E-value=0.075  Score=50.68  Aligned_cols=80  Identities=11%  Similarity=0.018  Sum_probs=54.6

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+.+++++|.++           .++++.||++|..++.+.-..                 .+.-+|+++...|+|+.
T Consensus        95 ~Le~~la~~~g~~~-----------~i~~~sG~~a~~~~i~~l~~~-----------------~~g~~vi~~~~~h~s~~  146 (410)
T PRK13392         95 LLERELADLHGKES-----------ALLFTSGYVSNDAALSTLGKL-----------------LPGCVILSDALNHASMI  146 (410)
T ss_pred             HHHHHHHHHhCCCC-----------EEEECcHHHHHHHHHHHHhcC-----------------CCCCEEEEehhhhHHHH
Confidence            34467888888642           566666799998888743110                 01125677777999999


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      .++...|..++.++.+     |.+.|++.+++.
T Consensus       147 ~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~  174 (410)
T PRK13392        147 EGIRRSGAEKQVFRHN-----DLADLEEQLASV  174 (410)
T ss_pred             HHHHHcCCeEEEEeCC-----CHHHHHHHHHhc
Confidence            9999889888777543     566777777643

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=96.04  E-value=0.035  Score=52.29  Aligned_cols=96  Identities=21%  Similarity=0.203  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCC----CcCCCCceEEEec
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWK----DSDIIANLVGYCS  246 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~----~~~~~~~~~i~~s  246 (297)
                      .+-.++.+++++++|.+           ..++|+|||+++..++.+.-..        |..+.    -.+..+.-.|+++
T Consensus        45 ~~~~~~~~~~a~~~g~~-----------~~~~~~g~t~al~~al~al~~~--------Gd~~~~~~~~~s~~~~~eVi~~  105 (363)
T TIGR01437        45 ELVNKTGEYIANLLGVE-----------DAVIVSSASAGIAQSVAAVITR--------GNRYLVENLHDSKIEVNEVVLP  105 (363)
T ss_pred             HHHHHHHHHHHHhhCCC-----------eEEEEcCHHHHHHHHHHHHhcC--------CCcchhhcccccccccceEEEE
Confidence            45566888999999975           2699999999999999876221        11000    0000111134455


Q ss_pred             CCCcch-----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678         247 DQAHSS-----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       247 ~~aH~S-----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~  288 (297)
                      . .|+.     +..++.+.|..++.+++  ++.+|+++|+++|.+.+
T Consensus       106 ~-~~~~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~~~t  149 (363)
T TIGR01437       106 K-GHNVDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAITEKT  149 (363)
T ss_pred             C-ccchhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcChhc
Confidence            4 6664     34566778888887776  46799999999998655

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=96.03  E-value=0.09  Score=50.82  Aligned_cols=90  Identities=14%  Similarity=0.088  Sum_probs=65.0

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|..++...++|+.+    ++.+|.+           ..++|+|||+|+..++.+.    ..              ... 
T Consensus        48 ~Y~~~~g~~~Leeai----a~~~g~~-----------~vv~t~~Gt~Al~la~~al----~~--------------pGD-   93 (431)
T cd00617          48 AYAGSKSFYDLEDAV----QDLFGFK-----------HIIPTHQGRGAENILFSIL----LK--------------PGR-   93 (431)
T ss_pred             ccCCCCCHHHHHHHH----HHHHCCC-----------eEEEcCCHHHHHHHHHHHh----CC--------------CCC-
Confidence            477788888888865    4556775           3799999999999888653    11              112 


Q ss_pred             EEEecCCCcchHHH-HHHhcCCceEEeeCCC----------CCCcCHHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVER-AGLLGGVTIRGLPADD----------SYKLRGDALEAAIEED  287 (297)
Q Consensus       242 ~i~~s~~aH~Si~K-aa~~lg~~v~~Vp~d~----------~~~md~~~L~~~i~~~  287 (297)
                      +| . ...||...+ +..+.|..++.+++++          .|.||+++|++.|.+.
T Consensus        94 ~V-~-~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~  148 (431)
T cd00617          94 TV-P-SNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEV  148 (431)
T ss_pred             EE-c-cCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcc
Confidence            33 3 367886655 4567899999999973          3559999999999753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK08175 aminotransferase; Validated

Probab=96.03  E-value=0.21  Score=47.42  Aligned_cols=100  Identities=14%  Similarity=0.181  Sum_probs=69.0

Q ss_pred             cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678         161 FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN  240 (297)
Q Consensus       161 ~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~  240 (297)
                      ..|....+...+.+.+.+|+.+..|++-+.      ...-++|+|++++....+.+.    ..               +.
T Consensus        61 ~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~------~~~i~~t~G~~~~l~~~~~~~----~~---------------~g  115 (395)
T PRK08175         61 HGYSTSRGIPRLRRAISRWYQDRYDVDIDP------ESEAIVTIGSKEGLAHLMLAT----LD---------------HG  115 (395)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCcEEEccCcHHHHHHHHHHh----CC---------------CC
Confidence            334444446678888999999887875210      014788999998876654332    11               11


Q ss_pred             eEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         241 LVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       241 ~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      -.|++++-++.+...++...|.+++.||+|++ ..++++|++++++
T Consensus       116 d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~l~~~l~~  160 (395)
T PRK08175        116 DTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEG-VDFFNELERAIRE  160 (395)
T ss_pred             CEEEEcCCCCcchHHHHHHcCCeEEEEecccC-CCcHHHHHHHHhh
Confidence            24667788888888888899999999999864 3458888888764

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=95.94  E-value=0.13  Score=48.24  Aligned_cols=86  Identities=13%  Similarity=0.084  Sum_probs=60.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      ....+-.++.+++++++|.+.           .+++++|+++++.++.+..    .              ... .|+++.
T Consensus        75 g~~~l~~~l~~~l~~~~g~~~-----------~i~~~sG~~a~~~a~~~~~----~--------------~gd-~vi~~~  124 (385)
T TIGR01825        75 GTLRLHEELEEKLAKFKKTEA-----------ALVFQSGFNTNQGVLSALL----R--------------KGD-IVLSDE  124 (385)
T ss_pred             CCcHHHHHHHHHHHHHhCCCc-----------EEEECcHHHHHHHHHHHhC----C--------------CCC-EEEEEc
Confidence            445566778889999998643           3444555889887776531    1              112 566788


Q ss_pred             CCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678         248 QAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       248 ~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~  288 (297)
                      ..|.+...++.+.|..++.++     .+|++.|++.|.+..
T Consensus       125 ~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~~  160 (385)
T TIGR01825       125 LNHASIIDGLRLTKATKKIYK-----HADMDDLDRVLRENP  160 (385)
T ss_pred             cccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhc
Confidence            899999999888888776653     688999998887643

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK15029 arginine decarboxylase; Provisional

Probab=95.93  E-value=0.15  Score=52.54  Aligned_cols=82  Identities=13%  Similarity=0.116  Sum_probs=62.5

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      .-+..|+++|.+.+          -.+|.|.|.+|+.++.++-.                   +.-.|++...+|-|+..
T Consensus       210 Aq~~aA~~fgA~~t----------~FlvNGST~gn~a~i~a~~~-------------------~gd~Vlv~RN~HKSv~~  260 (755)
T PRK15029        210 SEKYAARVFGADRS----------WSVVVGTSGSNRTIMQACMT-------------------DNDVVVVDRNCHKSIEQ  260 (755)
T ss_pred             HHHHHHHHhCCCcE----------EEEeCChhHHHHHHHHHhcC-------------------CCCEEEeecccHHHHHH
Confidence            34688999999875          56789999999966665411                   11257789999999999


Q ss_pred             HHHhcCCceEEeeCC--CC---CCcC-----HHHHHHHHHH
Q psy1678         256 AGLLGGVTIRGLPAD--DS---YKLR-----GDALEAAIEE  286 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d--~~---~~md-----~~~L~~~i~~  286 (297)
                      |+.+.|+..+.++..  +.   +.++     ++.++++|++
T Consensus       261 al~L~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~  301 (755)
T PRK15029        261 GLILTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISE  301 (755)
T ss_pred             HHHHcCCeEEEecccccccCCccCCCccccCHHHHHHHHHh
Confidence            999999988877643  22   3455     9999999976

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=95.88  E-value=0.1  Score=48.29  Aligned_cols=79  Identities=13%  Similarity=0.081  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch
Q psy1678         173 EVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS  252 (297)
Q Consensus       173 E~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S  252 (297)
                      ..++.+.+++++|.++           .+++++|+++++.++.+.    ..               +.-.|+++...|.+
T Consensus        63 ~~~l~~~la~~~~~~~-----------~i~~~~G~~~~~~~l~~~----~~---------------~gd~v~~~~~~~~~  112 (360)
T TIGR00858        63 HEELEEELAEWKGTEA-----------ALLFSSGYLANVGVISAL----VG---------------KGDLILSDALNHAS  112 (360)
T ss_pred             HHHHHHHHHHHhCCCC-----------EEEECchHHHHHHHHHHh----CC---------------CCCEEEEEccccHH
Confidence            3345566677777542           566677788888655433    11               11246678899999


Q ss_pred             HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         253 VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       253 i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ...++.+.|.+++.++.     +|++.|++.+++
T Consensus       113 ~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~  141 (360)
T TIGR00858       113 LIDGCRLSGARVRRYRH-----NDVEHLERLLEK  141 (360)
T ss_pred             HHHHHHhcCCceEEecC-----CCHHHHHHHHHH
Confidence            99999999999888874     689999998865

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=95.88  E-value=0.1  Score=51.49  Aligned_cols=97  Identities=9%  Similarity=-0.021  Sum_probs=68.6

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcC--CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCC
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLD--LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA  239 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg--~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~  239 (297)
                      .|..+.+...+-+.+.+|+.+..+  ++++         .-++|+|++++...++.+-    +.               +
T Consensus       180 ~Y~~~~G~~~lReaia~~~~~~~~~~~~~~---------~I~it~G~~eal~~~~~~l----~~---------------~  231 (517)
T PRK13355        180 GYSDSKGLFSARKAIMQYAQLKGLPNVDVD---------DIYTGNGVSELINLSMSAL----LD---------------D  231 (517)
T ss_pred             CCCCCcChHHHHHHHHHHHHhcCCCCCChh---------HEEEeCcHHHHHHHHHHHh----CC---------------C
Confidence            344444455666667777755432  3332         5889999999988777652    11               1


Q ss_pred             ceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       240 ~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                      .-.|+++.-.++....++.+.|.+++.+++++  ++.+|+++|++++..
T Consensus       232 Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~  280 (517)
T PRK13355        232 GDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITS  280 (517)
T ss_pred             CCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCc
Confidence            11466778888899999999999999999975  578999999988754

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=95.86  E-value=0.12  Score=49.09  Aligned_cols=112  Identities=14%  Similarity=0.109  Sum_probs=69.4

Q ss_pred             HHHHHHHhccccc-cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIACIG-FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       148 l~d~l~~~lN~n~-~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      +.+.+...++... ..|...+...++.+.+.+|+.+ .|.+-+       ...-++|+||++++..++.+..+       
T Consensus        53 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~-~~~~~~-------~~~i~~t~G~~~al~~~~~~l~~-------  117 (401)
T TIGR01264        53 VMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHN-PDGPIE-------ADDVVLCSGCSHAIEMCIAALAN-------  117 (401)
T ss_pred             HHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCC-------HHHEEECcChHHHHHHHHHHhCC-------
Confidence            3444444444321 2233334445566666666654 233211       12477899999998877765311       


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                                 ..+ .|+++.-+.......+...|+.++.++++.  ++.+|++.|++.+.+
T Consensus       118 -----------~gd-~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~  167 (401)
T TIGR01264       118 -----------AGQ-NILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDE  167 (401)
T ss_pred             -----------CCC-EEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhcc
Confidence                       012 355566666777888999999999998863  579999999987754

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=95.85  E-value=0.12  Score=50.19  Aligned_cols=102  Identities=16%  Similarity=0.135  Sum_probs=67.1

Q ss_pred             hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      +...+-+.+.+++.+.+|.....     ....-++|+|+|+++.+.+.+-    . .             ..+ .|+++.
T Consensus        96 G~~~LR~aiA~~l~~~~~~~~~v-----~p~~Ivit~G~t~al~~l~~~l----~-~-------------pGD-~Vlv~~  151 (447)
T PLN02607         96 GLKSFRQAMASFMEQIRGGKARF-----DPDRIVLTAGATAANELLTFIL----A-D-------------PGD-ALLVPT  151 (447)
T ss_pred             chHHHHHHHHHHHHHhcCCCCCc-----CHHHeEEcCChHHHHHHHHHHh----C-C-------------CCC-EEEEcC
Confidence            34456666777887776631100     0125789999999886655542    1 0             112 345566


Q ss_pred             CCcchHHHHHHh-cCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCCCc
Q psy1678         248 QAHSSVERAGLL-GGVTIRGLPADD--SYKLRGDALEAAIEEDLKKGKI  293 (297)
Q Consensus       248 ~aH~Si~Kaa~~-lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G~~  293 (297)
                      -....+.....+ .|++++.|+++.  ++.+|+++|++++++..++|..
T Consensus       152 P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~  200 (447)
T PLN02607        152 PYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIR  200 (447)
T ss_pred             CCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCC
Confidence            666677776664 788999999874  4679999999999987777653

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=95.85  E-value=0.41  Score=50.89  Aligned_cols=142  Identities=6%  Similarity=-0.017  Sum_probs=78.4

Q ss_pred             CCCCCC--CCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhcc--cccccc--ccCchhhHHHH
Q psy1678         101 PETAPD--TPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIA--CIGFTW--IASPACTELEV  174 (297)
Q Consensus       101 ~~~lP~--~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN--~n~~~~--~~~p~~~~iE~  174 (297)
                      +..+|.  .+.+..++++++++....+...   ..|.|.=+-+.-.++++-+.+.....  +.-..|  +.|...-+.=.
T Consensus        75 ~l~lp~~~~~~sE~e~~~~~~~la~kN~~~---~~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~  151 (993)
T PLN02414         75 SMKLSKYDEGLTESQMLEHMKSLASKNKVF---KSYIGMGYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLL  151 (993)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHhcCCcc---ccccCCCCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHH
Confidence            345662  5789999999999886554331   12222111111122333232222111  111112  33344333333


Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      +.-.++|+|+|.+..         .-.|+.++|.+--.+++ +....  +    +         ++-+|++|+..|++..
T Consensus       152 ~~Qt~ia~LtG~~~a---------naSL~d~aTAaaea~~~-a~~~~--~----g---------~~~~VlVs~~~hP~~~  206 (993)
T PLN02414        152 NYQTMITDLTGLPMS---------NASLLDEGTAAAEAMAM-CNNIL--K----G---------KKKKFLIASNCHPQTI  206 (993)
T ss_pred             HHHHHHHHHhCCChh---------hEeecCChHHHHHHHHH-HHhcc--c----C---------CCCEEEEcCccCHhHH
Confidence            466789999999864         57788888876554443 32210  0    1         2235888999999986


Q ss_pred             HHH----HhcCCceEEeeCC
Q psy1678         255 RAG----LLGGVTIRGLPAD  270 (297)
Q Consensus       255 Kaa----~~lg~~v~~Vp~d  270 (297)
                      ...    +-.|+.|+.+|++
T Consensus       207 ~v~~t~a~~~GieV~~v~~~  226 (993)
T PLN02414        207 DVCQTRADGLGLEVVVADEK  226 (993)
T ss_pred             HHHHHhhhhcCCEEEEecch
Confidence            554    3468888888764

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=95.84  E-value=0.14  Score=48.08  Aligned_cols=127  Identities=13%  Similarity=0.027  Sum_probs=74.2

Q ss_pred             CCCCCccccccCCCCCCHHHHHHHHHHHhcccc---ccccccCc---hhhHHHHHHHHHHHHHcCCCccccccCCCCCCe
Q psy1678         127 THWHSPKFHAYFPTANSYPAIVADILSDSIACI---GFTWIASP---ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGG  200 (297)
Q Consensus       127 ~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n---~~~~~~~p---~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G  200 (297)
                      +.|.+-.|+|+-..++...+ +.+.+.....+.   +.....+.   ..+.+=.+.-+.+++++|.+.           .
T Consensus         7 ~~~~s~~YL~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~-----------~   74 (370)
T PRK05937          7 IDFVTNDFLGFSRSDTLVHE-VEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE-----------A   74 (370)
T ss_pred             EEeECCCccCCCCCHHHHHH-HHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe-----------E
Confidence            45677779998776554444 344444443221   12222222   134444456778999999864           3


Q ss_pred             EEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHH
Q psy1678         201 VIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDAL  280 (297)
Q Consensus       201 ~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L  280 (297)
                      ++.+.|+.+|+ ++..+    +.              .+.-.|+.....|.|+..++.++.-..+..     ...|+++|
T Consensus        75 l~~~sG~~a~~-~~~~~----~~--------------~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~-----~~~d~~~l  130 (370)
T PRK05937         75 FIVPSGYMANL-GLCAH----LS--------------SVTDYVLWDEQVHISVVYSLSVISGWHQSF-----RHNDLDHL  130 (370)
T ss_pred             EEECChHHHHH-HHHHH----hC--------------CCCCEEEEEhhhhHHHHHHHHHcCCceEEe-----cCCCHHHH
Confidence            44445567775 32221    11              012257778999999999998864322223     35789999


Q ss_pred             HHHHHHHHH
Q psy1678         281 EAAIEEDLK  289 (297)
Q Consensus       281 ~~~i~~~~~  289 (297)
                      ++.|++...
T Consensus       131 ~~~l~~~~~  139 (370)
T PRK05937        131 ESLLESCRQ  139 (370)
T ss_pred             HHHHHhhhc
Confidence            999986543

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=95.73  E-value=0.21  Score=47.01  Aligned_cols=92  Identities=12%  Similarity=0.114  Sum_probs=65.0

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ...+-+.+.+|+.+..|.+-+.      .-.-++|+|++++...++.+.    +.               +.-.|++.+-
T Consensus        71 ~~~lr~aia~~~~~~~g~~~~~------~~~ii~t~G~~~~i~~~~~~~----~~---------------~gd~Vl~~~P  125 (385)
T PRK09276         71 MLEFRKAVADWYKRRFGVELDP------ETEVISLIGSKEGIAHIPLAF----VN---------------PGDVVLVPDP  125 (385)
T ss_pred             cHHHHHHHHHHHHHHhCCCCCC------CCcEEEccCcHHHHHHHHHHh----CC---------------CCCEEEEcCC
Confidence            4567777888888887864220      013667899999887766542    11               1124666777


Q ss_pred             CcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHH
Q psy1678         249 AHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE  285 (297)
Q Consensus       249 aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~  285 (297)
                      +.+....++...|.+++.||++.  .+.+|+++|++.+.
T Consensus       126 ~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~  164 (385)
T PRK09276        126 GYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA  164 (385)
T ss_pred             CCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc
Confidence            88888889999999999999974  36689999988775

>PRK13578 ornithine decarboxylase; Provisional

Probab=95.71  E-value=0.21  Score=51.16  Aligned_cols=82  Identities=15%  Similarity=0.054  Sum_probs=61.0

Q ss_pred             HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678         177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA  256 (297)
Q Consensus       177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka  256 (297)
                      -+..|+++|.+.+          -.+|.|.|-+|..++.++-.                   +.-.|++...+|-|+..+
T Consensus       180 q~~AA~~fgAd~t----------yFlvNGTS~gn~a~i~a~~~-------------------~Gd~VLvdRN~HKSv~hg  230 (720)
T PRK13578        180 QKHAAKVFNADKT----------YFVLNGTSASNKVVTNALLT-------------------PGDLVLFDRNNHKSNHHG  230 (720)
T ss_pred             HHHHHHHhCCCce----------EEEeCChhHHHHHHHHHhcC-------------------CCCEEEeecccHHHHHHH
Confidence            3578999999875          56789999999988877411                   112577899999999996


Q ss_pred             -HHhcCCceEEeeCC--CC---CCcCHHH-----HHHHHHHH
Q psy1678         257 -GLLGGVTIRGLPAD--DS---YKLRGDA-----LEAAIEED  287 (297)
Q Consensus       257 -a~~lg~~v~~Vp~d--~~---~~md~~~-----L~~~i~~~  287 (297)
                       ..+.|+..+.++..  +.   |.++++.     ++++|++.
T Consensus       231 aLiLsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~  272 (720)
T PRK13578        231 ALIQAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREV  272 (720)
T ss_pred             HHHHcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhc
Confidence             78889988877654  22   3456544     88888765

>PRK06290 aspartate aminotransferase; Provisional

Probab=95.67  E-value=0.22  Score=47.66  Aligned_cols=95  Identities=11%  Similarity=0.045  Sum_probs=66.7

Q ss_pred             chhhHHHHHHHHHHHHHcCCC-ccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         167 PACTELEVVMLDWLGKMLDLP-KEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~-~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      ++...+-..+.+|+.+..|.+ -+.      .-.-++|+|++++...++.+.    ..              ... .|++
T Consensus        81 ~G~~~lr~aia~~~~~~~g~~~~~~------~~~I~it~Gs~~al~~~~~~~----~~--------------~gd-~Vlv  135 (410)
T PRK06290         81 NGIQEFKEAAARYMEKVFGVKDIDP------VTEVIHSIGSKPALAMLPSCF----IN--------------PGD-VTLM  135 (410)
T ss_pred             CCcHHHHHHHHHHHHHHcCCCcCCC------cceEEEccCHHHHHHHHHHHh----CC--------------CCC-EEEE
Confidence            445667777888888877764 210      014889999999876666542    11              012 4555


Q ss_pred             cCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                      ..-+.+.....++..|.+++.||+|+  ++.+|+++|++.+.+
T Consensus       136 ~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~  178 (410)
T PRK06290        136 TVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKE  178 (410)
T ss_pred             eCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcc
Confidence            66677777888999999999999985  467899999888753

>PRK09265 aminotransferase AlaT; Validated

Probab=95.59  E-value=0.14  Score=48.75  Aligned_cols=69  Identities=14%  Similarity=0.023  Sum_probs=53.0

Q ss_pred             CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcC
Q psy1678         199 GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLR  276 (297)
Q Consensus       199 ~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md  276 (297)
                      .-++|+|+++++..++.+.    +.               +.-.|++++-+|..+..++...|.+++.+++|.  ++.+|
T Consensus        97 ~i~~t~G~~~~l~~~~~~~----~~---------------~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d  157 (404)
T PRK09265         97 DIYIGNGVSELIVMAMQAL----LN---------------NGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPD  157 (404)
T ss_pred             cEEEeCChHHHHHHHHHHh----CC---------------CCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCC
Confidence            5788999999887766543    11               112466788999999999999999999998874  46899


Q ss_pred             HHHHHHHHHH
Q psy1678         277 GDALEAAIEE  286 (297)
Q Consensus       277 ~~~L~~~i~~  286 (297)
                      +++|++.+..
T Consensus       158 ~~~l~~~~~~  167 (404)
T PRK09265        158 LDDIRSKITP  167 (404)
T ss_pred             HHHHHHhccc
Confidence            9999988753

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=95.59  E-value=0.12  Score=49.22  Aligned_cols=83  Identities=17%  Similarity=0.119  Sum_probs=55.7

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|....+|+    .+++++|.+           ..++|+||++|+..++.+.    +.              ... .|+
T Consensus        59 ~~p~~~~le~----~la~l~g~~-----------~~v~~ssG~~Ai~~al~al----~~--------------~Gd-~Vi  104 (390)
T PRK08133         59 TNPTVTMFQE----RLAALEGAE-----------ACVATASGMAAILAVVMAL----LQ--------------AGD-HVV  104 (390)
T ss_pred             CChHHHHHHH----HHHHHhCCC-----------cEEEECCHHHHHHHHHHHH----hC--------------CCC-EEE
Confidence            3555555665    577888864           3788999999999887653    11              011 466


Q ss_pred             ecCCCcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...|.+..    +.+..+|++++.|+++     |+++|+++|++
T Consensus       105 ~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~  145 (390)
T PRK08133        105 SSRSLFGSTVSLFEKIFARFGIETTFVDLT-----DLDAWRAAVRP  145 (390)
T ss_pred             EccCcchhHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCc
Confidence            7777776543    4556678888888765     67777777753

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=95.47  E-value=0.076  Score=49.64  Aligned_cols=82  Identities=16%  Similarity=0.086  Sum_probs=57.5

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+.+++++|.+++         .-++|+|+++++...+.+.    ..               +.-.|++++..+....
T Consensus        71 ~lr~~ia~~~~~~~~---------~i~~t~G~~~~l~~~~~~l----~~---------------~gd~vl~~~p~y~~~~  122 (367)
T PRK02731         71 ELKAALAEKFGVDPE---------RIILGNGSDEILELLARAY----LG---------------PGDEVIYSEHGFAVYP  122 (367)
T ss_pred             HHHHHHHHHhCcCHH---------HEEEcCCHHHHHHHHHHHh----cC---------------CCCEEEEecCCHHHHH
Confidence            344566777787653         4788999888765443332    11               1124666777777777


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      .++...|.+++.||++ ++.+|++.|++.++
T Consensus       123 ~~~~~~g~~~~~~~~~-~~~~~~~~l~~~~~  152 (367)
T PRK02731        123 IAAQAVGAKPVEVPAK-DYGHDLDAMLAAVT  152 (367)
T ss_pred             HHHHHcCCeEEEeccc-CCCCCHHHHHHHhC
Confidence            7788899999999994 58899999998885

>PRK03321 putative aminotransferase; Provisional

Probab=95.45  E-value=0.067  Score=49.76  Aligned_cols=84  Identities=14%  Similarity=0.055  Sum_probs=56.3

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+.+++++|.+++         .-++|+|+++++..++.+.    ..              ... .|++...+.....
T Consensus        61 ~lr~~ia~~~~~~~~---------~I~~~~G~~~~l~~~~~~~----~~--------------~gd-~Vli~~p~y~~~~  112 (352)
T PRK03321         61 ELRAALAEHLGVPPE---------HVAVGCGSVALCQQLVQAT----AG--------------PGD-EVIFAWRSFEAYP  112 (352)
T ss_pred             HHHHHHHHHhCcCHH---------HEEECCCHHHHHHHHHHHh----cC--------------CCC-EEEeCCCCHHHHH
Confidence            345566777776653         4788998888766554321    11              012 3444444434455


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .+++..|.+++.||.++++.+|+++|++.++.
T Consensus       113 ~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~~  144 (352)
T PRK03321        113 ILVQVAGATPVQVPLTPDHTHDLDAMAAAITD  144 (352)
T ss_pred             HHHHHcCCEEEEccCCCCCCCCHHHHHHhhcc
Confidence            57788899999999997799999999988853

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=95.44  E-value=0.076  Score=49.59  Aligned_cols=79  Identities=15%  Similarity=0.111  Sum_probs=57.9

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +.+.+++.+|.+++         .-++|+|+++++...+.+.    ..              .+.-.|++..-.......
T Consensus        65 Lr~aia~~~~~~~~---------~I~it~Gs~~~i~~~~~~~----~~--------------~g~d~vlv~~P~y~~y~~  117 (354)
T PRK04635         65 LINAYSAYAGVAPE---------QILTSRGADEAIELLIRAF----CE--------------PGQDSIACFGPTYGMYAI  117 (354)
T ss_pred             HHHHHHHHhCcCHH---------HEEEeCCHHHHHHHHHHHh----cC--------------CCCCeEEEcCCChHHHHH
Confidence            44566677788765         5889999999888766542    11              011235556666666778


Q ss_pred             HHHhcCCceEEeeCCCCCCcCHHHHH
Q psy1678         256 AGLLGGVTIRGLPADDSYKLRGDALE  281 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~~~~md~~~L~  281 (297)
                      .++..|++++.||+++++.+|++.++
T Consensus       118 ~~~~~g~~v~~v~~~~~~~~~~~~l~  143 (354)
T PRK04635        118 SAETFNVGVKALPLTADYQLPLDYIE  143 (354)
T ss_pred             HHHHcCCEEEEEecCCCCCCCHHHHH
Confidence            88999999999999988999999886

>PRK09148 aminotransferase; Validated

Probab=95.42  E-value=0.22  Score=47.44  Aligned_cols=97  Identities=18%  Similarity=0.119  Sum_probs=63.8

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |....+...+...+.+|+.+..|.+-+.      ...-++|+|++++...++.+-.+                   +.-.
T Consensus        64 Y~~~~G~~~lr~aia~~~~~~~g~~~~~------~~~I~it~G~~~al~~~~~~l~~-------------------~gd~  118 (405)
T PRK09148         64 YSASKGIPGLRRAQAAYYARRFGVKLNP------DTQVVATLGSKEGFANMAQAITA-------------------PGDV  118 (405)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCcEEEcCChHHHHHHHHHHhcC-------------------CCCE
Confidence            3333345677778888888877764210      01478999999998776654311                   1114


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      |+++.-+++....++...|..++.||+++++. +++.|++.++
T Consensus       119 Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~  160 (405)
T PRK09148        119 ILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEE-FFPALERAVR  160 (405)
T ss_pred             EEEcCCCCcccHHHHHhcCCEEEEEeCCCCCC-CccCHHHHHh
Confidence            56677788888888888999999999876532 3455655554

>PRK08637 hypothetical protein; Provisional

Probab=95.40  E-value=0.33  Score=45.96  Aligned_cols=69  Identities=12%  Similarity=0.009  Sum_probs=49.8

Q ss_pred             CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHH-HhcCCceEEeeCC-CCCCcC
Q psy1678         199 GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAG-LLGGVTIRGLPAD-DSYKLR  276 (297)
Q Consensus       199 ~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa-~~lg~~v~~Vp~d-~~~~md  276 (297)
                      ..++|+|++++..+.+.+.-+                   +.-.|++..-+++....++ ...|.+++.||++ +++.+|
T Consensus        71 ~I~it~G~~~al~~~~~~l~~-------------------~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d  131 (388)
T PRK08637         71 LPIVTNALTHGLSLVADLFVD-------------------QGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFD  131 (388)
T ss_pred             eeeEccchHHHHHHHHHHhcC-------------------CCCEEEEcCCCCccHHHHHHHhcCCEEEEecccCCCCcCC
Confidence            368999999988766654210                   1124556666777777764 4689999999984 567899


Q ss_pred             HHHHHHHHHH
Q psy1678         277 GDALEAAIEE  286 (297)
Q Consensus       277 ~~~L~~~i~~  286 (297)
                      +++|++.++.
T Consensus       132 ~~~l~~~~~~  141 (388)
T PRK08637        132 TDALKEALQA  141 (388)
T ss_pred             HHHHHHHHHh
Confidence            9999998873

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=95.38  E-value=0.19  Score=47.79  Aligned_cols=79  Identities=11%  Similarity=0.000  Sum_probs=56.5

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++-+.+++++|.+           ..++++.|+++|..++.+++...                 +..+|++....|.|+.
T Consensus        94 ~Le~~la~~~g~~-----------~~l~~~sG~~an~~ai~~l~~~~-----------------~~~~v~~~~~~h~s~~  145 (402)
T TIGR01821        94 ELEAELADLHGKE-----------SALVFTSGYVANDATLATLAKII-----------------PGCVIFSDELNHASMI  145 (402)
T ss_pred             HHHHHHHHHhCCC-----------eEEEECchHHHHHHHHHHhhCCC-----------------CCCEEEEcchHhHHHH
Confidence            4556778888854           26777778999999998875320                 1235666667899999


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .++...|..++.++.     .|+++|++.++.
T Consensus       146 ~~~~~~g~~~~~~~~-----~d~~~l~~~l~~  172 (402)
T TIGR01821       146 EGIRHSGAEKFIFRH-----NDVAHLEKLLQS  172 (402)
T ss_pred             HHHHHcCCeEEEECC-----CCHHHHHHHHHh
Confidence            998888887766543     377888888864

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=95.37  E-value=0.39  Score=45.32  Aligned_cols=98  Identities=11%  Similarity=0.098  Sum_probs=66.6

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCC-CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKG-GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN  240 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~-~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~  240 (297)
                      .|...+....+-+.+.+|+.+..|++-+       .. .-++|+|++++...++.+.    +.              ..+
T Consensus        63 ~Y~~~~G~~~lr~aia~~~~~~~g~~~~-------~~~~I~it~Gs~~al~~~~~~l----~~--------------~gd  117 (388)
T PRK07366         63 GYLLFHGTLDFREAAAQWYEQRFGLAVD-------PETEVLPLIGSQEGTAHLPLAV----LN--------------PGD  117 (388)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhhCCcCC-------CcCeEEECCCcHHHHHHHHHHh----CC--------------CCC
Confidence            3444445566777788888888776422       01 3667899999887766542    11              012


Q ss_pred             eEEEecCCCcchHHHHHHhcCCceEEeeCCCC--CCcCHHHHHHHHH
Q psy1678         241 LVGYCSDQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIE  285 (297)
Q Consensus       241 ~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~--~~md~~~L~~~i~  285 (297)
                       .|++.+-+.+.....+...|.+++.||++++  +.+|+++|++.+.
T Consensus       118 -~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~  163 (388)
T PRK07366        118 -FALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVL  163 (388)
T ss_pred             -EEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhc
Confidence             3555666777778888999999999999853  5688888877664

>PTZ00376 aspartate aminotransferase; Provisional

Probab=95.34  E-value=0.29  Score=46.57  Aligned_cols=103  Identities=9%  Similarity=-0.030  Sum_probs=68.1

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeE--EcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCC
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGV--IQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA  239 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~--~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~  239 (297)
                      .|....+..++=+.+.+|+.+.-+.+-+       ...-+  .|+||+.|...++.+.+.. +.               +
T Consensus        67 ~Y~~~~G~~~lR~aia~~~~~~~~~~~~-------~~~v~~~~t~G~~~al~~~~~~l~~~-~~---------------~  123 (404)
T PTZ00376         67 EYLPIEGLQSFIEAAQKLLFGEASYALA-------EKRIATVQALSGTGALRLGFEFLKRF-LP---------------A  123 (404)
T ss_pred             CCCCCCCCHHHHHHHHHHhcCCCccccc-------cCeEEEeeccCcchHHHHHHHHHHHh-cC---------------C
Confidence            3444444555656677777544332111       01233  4899999988777654322 11               1


Q ss_pred             ceEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHHH
Q psy1678         240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEED  287 (297)
Q Consensus       240 ~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~~  287 (297)
                      .-.|++.+-+.+....+++.+|.+++.||++  +++.+|++.|++++++.
T Consensus       124 Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~  173 (404)
T PTZ00376        124 GTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTA  173 (404)
T ss_pred             CCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhC
Confidence            1246667778888899999999999999993  35899999999998653

>PRK09064 5-aminolevulinate synthase; Validated

Probab=95.23  E-value=0.2  Score=47.68  Aligned_cols=78  Identities=10%  Similarity=-0.002  Sum_probs=55.5

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +-+.+++++|.+.           .++.+.|++||..++.+++..                 .++.+|++....|.|+..
T Consensus        96 l~~~la~~~g~~~-----------~~~~~sG~~an~~ai~~l~~~-----------------~~~~~i~~~~~~h~s~~~  147 (407)
T PRK09064         96 LERELADLHGKEA-----------ALVFTSGYVSNDATLSTLAKL-----------------IPDCVIFSDELNHASMIE  147 (407)
T ss_pred             HHHHHHHHhCCCc-----------EEEECcHHHHHHHHHHHHhCC-----------------CCCCEEEEeCcchHHHHH
Confidence            4456677777542           566677889999998876432                 023356677788999988


Q ss_pred             HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         256 AGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...|..++.++.     .|++.|++.++.
T Consensus       148 ~~~~~~~~~~~~~~-----~d~~~le~~l~~  173 (407)
T PRK09064        148 GIRRSRCEKHIFRH-----NDVAHLEELLAA  173 (407)
T ss_pred             HHHHcCCcEEEECC-----CCHHHHHHHHHh
Confidence            88888887766664     278889888864

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=95.21  E-value=0.22  Score=47.07  Aligned_cols=37  Identities=14%  Similarity=-0.020  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      .++.+.|+++.+.+           ..+||+|||+||..|+++||.+.
T Consensus        76 ~~la~~l~~~~~~~-----------~v~~~~sGseA~~~al~~ar~~~  112 (389)
T PRK01278         76 ERLAERLVENSFAD-----------KVFFTNSGAEAVECAIKTARRYH  112 (389)
T ss_pred             HHHHHHHHhhCCCC-----------EEEEcCCcHHHHHHHHHHHHHHH
Confidence            34455666666432           38899999999999999999863

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=95.12  E-value=1.7  Score=42.28  Aligned_cols=80  Identities=14%  Similarity=0.101  Sum_probs=53.8

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc----
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH----  250 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH----  250 (297)
                      .+-+.+++++|.+.           .+++++|+.|++.++.+     +.    .          ++ .|++|...|    
T Consensus       126 ~le~~lA~l~gae~-----------alvv~sg~aAi~l~l~~-----l~----~----------Gd-eVIvs~~e~v~~g  174 (454)
T TIGR00474       126 HVEGLLCELTGAED-----------ALVVNNNAAAVLLALNT-----LA----K----------GK-EVIVSRGELVEIG  174 (454)
T ss_pred             HHHHHHHHHhCCCc-----------EEEECCHHHHHHHHHHH-----hC----C----------cC-EEEECCChhhhhc
Confidence            46678899999864           56778888888777733     11    0          12 466676554    


Q ss_pred             --chHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         251 --SSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       251 --~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                        +++...+...|+.++.|+++  +..|+++++++|.+.
T Consensus       175 gs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~~~  211 (454)
T TIGR00474       175 GSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAITEN  211 (454)
T ss_pred             chhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcCcC
Confidence              35556667778888887664  356788888888653

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=95.11  E-value=0.21  Score=47.50  Aligned_cols=126  Identities=18%  Similarity=0.144  Sum_probs=81.6

Q ss_pred             CCCCCCccccccCCCCCCHHHHHHHHHHHh-ccccc--cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEE
Q psy1678         126 VTHWHSPKFHAYFPTANSYPAIVADILSDS-IACIG--FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVI  202 (297)
Q Consensus       126 ~~~~~~p~~~g~~~s~~~~~svl~d~l~~~-lN~n~--~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~  202 (297)
                      .+.|.+-.|+|.-..+. ....+.+.+... ....+  .....++...++|+    .||+.+|.+.           .++
T Consensus        41 ~~nf~SNdYLGLa~~~~-~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~----~lA~f~g~e~-----------al~  104 (388)
T COG0156          41 VLNFCSNDYLGLASHPE-LIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEE----ELADFLGAEA-----------ALL  104 (388)
T ss_pred             eEeeeccCcccccCCHH-HHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHH----HHHHHhCCCc-----------EEE
Confidence            34677777888765543 222222222221 11111  22344566677887    6778889874           445


Q ss_pred             cCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHH
Q psy1678         203 QGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEA  282 (297)
Q Consensus       203 tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~  282 (297)
                      -+.|-.||+-.+-+-     .              .++-+|+.=+..|.|+..++++.+.+++.-+-     -|+++|++
T Consensus       105 f~SGy~AN~~~i~~l-----~--------------~~~dli~~D~lnHASiidG~rls~a~~~~f~H-----nD~~~Le~  160 (388)
T COG0156         105 FSSGFVANLGLLSAL-----L--------------KKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-----NDLDHLEA  160 (388)
T ss_pred             EcccchhHHHHHHHh-----c--------------CCCcEEEEechhhhhHHHHHHhCCCcEEEecC-----CCHHHHHH
Confidence            555778887665542     1              12447788899999999999999998887654     68899999


Q ss_pred             HHHHHHHCC
Q psy1678         283 AIEEDLKKG  291 (297)
Q Consensus       283 ~i~~~~~~G  291 (297)
                      .|++...+|
T Consensus       161 ~l~~~~~~~  169 (388)
T COG0156         161 LLEEARENG  169 (388)
T ss_pred             HHHhhhccC
Confidence            999977554

>PRK07505 hypothetical protein; Provisional

Probab=95.10  E-value=0.23  Score=47.23  Aligned_cols=87  Identities=14%  Similarity=0.053  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      +....++.+.|++++|. +           -+++++|+++|..++..++.....     +        .++.+|+.....
T Consensus        90 ~~~~~~l~~~la~~~~~-~-----------~~~~~sG~~a~~~ai~~~~~~~~~-----~--------~~~~vi~~~~~~  144 (402)
T PRK07505         90 SQILKDLEEALSELFGA-S-----------VLTFTSCSAAHLGILPLLASGHLT-----G--------GVPPHMVFDKNA  144 (402)
T ss_pred             hHHHHHHHHHHHHHhCC-C-----------EEEECChHHHHHHHHHHHHhcccC-----C--------CCCCEEEEchhh
Confidence            44555677888898886 3           455556788999999887542211     0        122356677799


Q ss_pred             cchHHHHHHh--cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         250 HSSVERAGLL--GGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       250 H~Si~Kaa~~--lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      |.|+.....+  .+.+++.+|.+     |+++|++++++
T Consensus       145 H~s~~~~~~~~~~~~~v~~~~~~-----d~~~l~~~~~~  178 (402)
T PRK07505        145 HASLNILKGICADETEVETIDHN-----DLDALEDICKT  178 (402)
T ss_pred             hHhHHhhhhhhhcCCeEEEeCCC-----CHHHHHHHHhc
Confidence            9998543222  24577777763     78888887753

>PRK06855 aminotransferase; Validated

Probab=95.10  E-value=0.31  Score=46.96  Aligned_cols=96  Identities=11%  Similarity=-0.016  Sum_probs=60.5

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |....+..++-+.+.+|+.+..|++-+.       ..-++|+|++++...++. .    +.              ... .
T Consensus        69 Y~~~~G~~~LReaia~~~~~~~g~~~~~-------~~I~it~G~~~al~~~~~-l----~~--------------~Gd-~  121 (433)
T PRK06855         69 YCPTKGVLETREFLAELNNKRGGAQITP-------DDIIFFNGLGDAIAKIYG-L----LR--------------REA-R  121 (433)
T ss_pred             CCCCCCCHHHHHHHHHHHHhccCCCCCH-------hHEEEcCcHHHHHHHHHH-h----cC--------------CCC-e
Confidence            4333445566667888888877764221       258899999998766642 1    11              012 3


Q ss_pred             EEecCCCcchHHHHH-HhcCCceEEeeCCC--CCCcCHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAG-LLGGVTIRGLPADD--SYKLRGDALEAAIE  285 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa-~~lg~~v~~Vp~d~--~~~md~~~L~~~i~  285 (297)
                      |++.+-+.+....++ ...|+.++.||+++  .+.+|+++|++.++
T Consensus       122 Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~  167 (433)
T PRK06855        122 VIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVK  167 (433)
T ss_pred             EEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHh
Confidence            444555555444332 34588889999874  46899999999886

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=95.02  E-value=0.5  Score=45.55  Aligned_cols=156  Identities=15%  Similarity=0.121  Sum_probs=73.9

Q ss_pred             ChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHH-HHH--Hhcccc-ccccccCc
Q psy1678          92 EPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVAD-ILS--DSIACI-GFTWIASP  167 (297)
Q Consensus        92 ~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d-~l~--~~lN~n-~~~~~~~p  167 (297)
                      -|++++..-+..+|+. .+..++++++.+...++..   ...|.|-=...--.++++.. ++.  .++... ..-.+.|.
T Consensus        31 IP~~i~~~~~~~lp~~-~sE~e~~r~~~~la~kN~~---~~~fiG~G~y~~~~P~~i~~~i~~~~ef~TaYtPYQpEisQ  106 (429)
T PF02347_consen   31 IPEEIRLKKPLNLPEP-LSEYELLRHLERLASKNKS---YTSFIGAGSYTHYVPAVIDRNILSRPEFYTAYTPYQPEISQ  106 (429)
T ss_dssp             S-GGG-SS-----------HHHHHHHHHHHHTTS-----TTS---CTTT-----HHHHH-HHCCHHCCCS-STTSGGGBH
T ss_pred             CCHhhcCCCCCCCCCC-CCHHHHHHHHHHHHhcCCC---CCccccccccCceeChhhcCccccChhhhccCCCCCcHHHH
Confidence            3555533323455543 7889999999998766543   12243322222234455554 221  122221 11224455


Q ss_pred             hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      +.-++=-+--.|+|+|.|++-.         .--+..|+|- --.|++.|.....+               ++-++++|+
T Consensus       107 G~Lq~lfe~Qs~i~eLTGmdva---------NaSlyd~atA-~aEa~~ma~r~~~~---------------~~~~vlv~~  161 (429)
T PF02347_consen  107 GRLQALFEYQSMICELTGMDVA---------NASLYDGATA-AAEAMLMAVRATKR---------------KRNKVLVPE  161 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSEE----------SEBSSCCHH-HHHHHHHHHHHHTT------------------EEEEET
T ss_pred             HHHHHHHHHHHHHHHhhCCCcc---------CCCCCChhHH-HHHHHHHHHHhccc---------------CCcEEEEcC
Confidence            5444444556799999999853         2234445543 23344443322111               123578899


Q ss_pred             CCcchHHHHHH----hcCCceEEeeCCCCCCcC
Q psy1678         248 QAHSSVERAGL----LGGVTIRGLPADDSYKLR  276 (297)
Q Consensus       248 ~aH~Si~Kaa~----~lg~~v~~Vp~d~~~~md  276 (297)
                      ..|+......+    ..|++++.+|+++.+..|
T Consensus       162 ~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d  194 (429)
T PF02347_consen  162 SLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD  194 (429)
T ss_dssp             TS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB-
T ss_pred             CcChhhHHHHHHhhhhCCeEEEEecccccCCcc
Confidence            99999887544    468899999999888886

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=94.94  E-value=0.3  Score=46.93  Aligned_cols=92  Identities=13%  Similarity=0.113  Sum_probs=62.8

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      .|...++|+.+.+.+++++|...          .-+++++||.||+.++.+-    ..               +.-.|++
T Consensus        69 ~~~~~~lE~~~~~~la~l~g~~~----------alv~~~SG~~A~~~~l~al----~~---------------~GD~Vl~  119 (416)
T PRK13034         69 CEFVDEVEALAIERAKQLFGCDY----------ANVQPHSGSQANGAVYLAL----LK---------------PGDTILG  119 (416)
T ss_pred             ChHHHHHHHHHHHHHHHHhCCCc----------eEEecCCcHHHHHHHHHHh----cC---------------CCCEEEE
Confidence            47788999888889999999863          2356789999999887763    11               1225778


Q ss_pred             cCCCcch-HHHHHHh--cCCce--EEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSS-VERAGLL--GGVTI--RGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~S-i~Kaa~~--lg~~v--~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      +...|.+ +.-++..  ++..+  +..++|. .+.+|+++|++.++.
T Consensus       120 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~  166 (416)
T PRK13034        120 MSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKE  166 (416)
T ss_pred             cCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhh
Confidence            8899987 3333332  22222  3444543 577999999998864

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=94.91  E-value=0.32  Score=45.73  Aligned_cols=41  Identities=17%  Similarity=0.017  Sum_probs=32.6

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      ...++.++.+++++..+.+           .-+|+++|++||..|++.||..
T Consensus        69 ~~~~~~~la~~l~~~~~~~-----------~~~~~~sG~~a~~~A~~~a~~~  109 (377)
T PRK02936         69 TNSLQEEVASLLAENSAGD-----------LVFFCNSGAEANEAALKLARKH  109 (377)
T ss_pred             CCHHHHHHHHHHHhcCCCC-----------EEEEeCCcHHHHHHHHHHHHHh
Confidence            3567777778888876543           3789999999999999999764

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=94.90  E-value=0.083  Score=49.53  Aligned_cols=94  Identities=10%  Similarity=-0.081  Sum_probs=59.8

Q ss_pred             cccccccccC---chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCC-hhHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy1678         157 ACIGFTWIAS---PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGT-ASEATLVALLGAKAKTMQRVKEAHPDW  232 (297)
Q Consensus       157 N~n~~~~~~~---p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsG-GT~anl~Al~~AR~~~~~~~~~~~~~~  232 (297)
                      |..-..+..+   +-+..+-.++.+.+++++|.++.        ..-+||+| ||+++-+++..-    ..+    +   
T Consensus        27 ~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~--------~~vvf~~gs~T~a~~~~~~~l----~~~----~---   87 (355)
T cd00611          27 GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDN--------YKVLFLQGGATGQFAAVPLNL----LGD----K---   87 (355)
T ss_pred             cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC--------ceEEEEcCCchHHHHHHHHhc----CCC----C---
Confidence            4433444455   44456666799999999998643        25899988 999887766553    110    0   


Q ss_pred             CCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCc
Q psy1678         233 KDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKL  275 (297)
Q Consensus       233 ~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~m  275 (297)
                           .+..+|+.+.-.|-+.+ .+.-.|+.++.++++++|..
T Consensus        88 -----~~~~~i~~g~~~~~~~~-~a~~~g~~~~~~~~~~~g~~  124 (355)
T cd00611          88 -----GTADYVVTGAWSAKAAK-EAKRYGGVVVIVAAKEEGKY  124 (355)
T ss_pred             -----CeEEEEECCHHHHHHHH-HHHhcCCCcEEEecccccCC
Confidence                 12346666655665533 34455899999998866543

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=94.90  E-value=0.11  Score=48.84  Aligned_cols=81  Identities=14%  Similarity=-0.062  Sum_probs=57.4

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +.+.+++.+|.+++         .-++|+|+++++..++.+.    ..               +.-.|++.+-+++++..
T Consensus        72 Lr~~ia~~~~~~~~---------~I~it~G~~~~l~~~~~~~----~~---------------~gd~vlv~~p~y~~~~~  123 (369)
T PRK08153         72 LRHALAAHHGVAPE---------NIMVGEGIDGLLGLIVRLY----VE---------------PGDPVVTSLGAYPTFNY  123 (369)
T ss_pred             HHHHHHHHhCCCHH---------HEEEcCCHHHHHHHHHHHh----cC---------------CCCEEEECCCcchHHHH
Confidence            33455555677654         5888999988776555442    10               11246677788888888


Q ss_pred             HHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         256 AGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      .+..+|.+++.||.+.+ .+|+++|.+.+.
T Consensus       124 ~~~~~g~~~~~vp~~~~-~~~~~~l~~~~~  152 (369)
T PRK08153        124 HVAGFGGRLVTVPYRDD-REDLDALLDAAR  152 (369)
T ss_pred             HHHHcCCeEEEeeCCCC-CCCHHHHHHHhc
Confidence            89999999999999776 489988877664

>PRK04311 selenocysteine synthase; Provisional

Probab=94.88  E-value=1.6  Score=42.72  Aligned_cols=85  Identities=14%  Similarity=0.121  Sum_probs=56.3

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ....+ .+-+.+++++|.+.           .+++++|+.|++.++.+     +.    .          .+ .|++|..
T Consensus       126 g~r~~-~~e~~lA~l~Gae~-----------a~vv~sgtaAl~l~l~~-----l~----~----------Gd-eVIvs~~  173 (464)
T PRK04311        126 GSRDR-ALAALLCALTGAED-----------ALVVNNNAAAVLLALNA-----LA----A----------GK-EVIVSRG  173 (464)
T ss_pred             chHHH-HHHHHHHHHhCCCe-----------EEEECCHHHHHHHHHHH-----hC----C----------CC-EEEEcch
Confidence            33344 45678899999753           67888899999877743     11    0          11 4667776


Q ss_pred             Ccch------HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         249 AHSS------VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       249 aH~S------i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      .|++      +...+...|+.++.|+++  +..++++++++|.+.
T Consensus       174 e~~~~ggs~~i~~~~~~~G~~l~~v~~~--~~t~~~dle~aI~~~  216 (464)
T PRK04311        174 ELVEIGGAFRIPDVMRQAGARLVEVGTT--NRTHLRDYEQAINEN  216 (464)
T ss_pred             hhhhcCcchhhHHHHHHCCcEEEEECCC--CCCCHHHHHHhcCcc
Confidence            6653      445566678888877664  356788999888754

>PLN02822 serine palmitoyltransferase

Probab=94.69  E-value=0.7  Score=45.31  Aligned_cols=84  Identities=12%  Similarity=0.089  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .....++-+.+++++|.++          .-+||+|++ +|..++.+.    ..               +.-+|++....
T Consensus       153 ~~~~~~Lee~La~~~~~~~----------~i~~s~G~~-a~~sai~a~----~~---------------~gd~Ii~d~~~  202 (481)
T PLN02822        153 IDVHLDCETKIAKFLGTPD----------SILYSYGLS-TIFSVIPAF----CK---------------KGDIIVADEGV  202 (481)
T ss_pred             HHHHHHHHHHHHHHhCCCC----------EEEECCHHH-HHHHHHHHh----CC---------------CCCEEEEeCCc
Confidence            3445556667788888664          366677666 565544432    11               12246678899


Q ss_pred             cchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678         250 HSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       250 H~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~  288 (297)
                      |+|+..++.+.|.+++.++.+     |.+.|+..+++..
T Consensus       203 H~s~~~~~~ls~~~~~~~~~n-----d~~~l~~~l~~~~  236 (481)
T PLN02822        203 HWGIQNGLYLSRSTIVYFKHN-----DMESLRNTLEKLT  236 (481)
T ss_pred             cHHHHHHHHHcCCeEEEECCC-----CHHHHHHHHHHHh
Confidence            999999999999988888876     4567777776543

>PRK07908 hypothetical protein; Provisional

Probab=94.60  E-value=0.16  Score=47.15  Aligned_cols=76  Identities=11%  Similarity=0.079  Sum_probs=52.3

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ...+++++.+|.+++         .-++|+|+++++..++.      +.              ..+ +++ ..-+-....
T Consensus        62 ~lr~aia~~~~~~~~---------~I~it~Ga~~al~~~~~------l~--------------~~~-viv-~~P~y~~~~  110 (349)
T PRK07908         62 RARAAVAARHGRTPD---------EVLLLAGAAEGFALLAR------LR--------------PRR-AAV-VHPSFTEPE  110 (349)
T ss_pred             HHHHHHHHHhCcChh---------hEEECCCHHHHHHHHHh------cC--------------CCe-EEE-eCCCChHHH
Confidence            355677777787654         58999999999875543      11              012 222 233444456


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALE  281 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~  281 (297)
                      .++...|++++.||+|+++.+|+++|+
T Consensus       111 ~~~~~~G~~i~~v~~~~~~~~d~~~l~  137 (349)
T PRK07908        111 AALRAAGIPVHRVVLDPPFRLDPAAVP  137 (349)
T ss_pred             HHHHHcCCEEEeeccCcccCcChhHhc
Confidence            677889999999999988999998663

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=94.54  E-value=0.53  Score=44.71  Aligned_cols=39  Identities=18%  Similarity=0.110  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      ...++-+.|++++|++.           -.|+++||+||..|++.||.+.
T Consensus        80 ~~~~l~~~l~~~~~~~~-----------~~~~~SGs~A~e~ai~~a~~~~  118 (401)
T TIGR01885        80 VFGEFAEYVTKLFGYDK-----------VLPMNTGAEAVETAIKLARKWG  118 (401)
T ss_pred             HHHHHHHHHHhhcCCCE-----------EEEeCccHHHHHHHHHHHHHHh
Confidence            33445557777778653           6789999999999999999864

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=94.50  E-value=0.24  Score=46.46  Aligned_cols=83  Identities=13%  Similarity=0.035  Sum_probs=56.1

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ...+.+++.+|.+++         .-++|+|++++..+++.+.    ..              .+.-.|+++.-......
T Consensus        63 ~lr~~ia~~~~~~~~---------~I~~t~G~~~~l~~~~~~~----~~--------------~g~~~vlv~~p~y~~~~  115 (364)
T PRK04781         63 GLRSALAALYGCAPE---------QLLIGRGSDEAIDLLVRAL----CV--------------PGRDAVLVTPPVFGMYA  115 (364)
T ss_pred             HHHHHHHHHhCcChH---------HEEEeCCHHHHHHHHHHHh----cC--------------CCCCeEEEcCCChHHHH
Confidence            455667777788654         5889999999887766542    10              01123556655655566


Q ss_pred             HHHHhcCCceEEeeCCC---CCCcCHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADD---SYKLRGDALEAAI  284 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~---~~~md~~~L~~~i  284 (297)
                      ..++..|.+++.||.++   .+++|+++|.+.+
T Consensus       116 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~  148 (364)
T PRK04781        116 VCARLQNAPLVEVPLVDGADGFHADVPAIVAAA  148 (364)
T ss_pred             HHHHHcCCEEEEEecCCCccCCCcCHHHHHHHH
Confidence            67788999999999842   3478998876554

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=94.50  E-value=0.8  Score=43.58  Aligned_cols=37  Identities=16%  Similarity=-0.036  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      .++-+.|+++++.+           .-.|+++||+||..|+++||.+.
T Consensus        80 ~~la~~L~~~~~~~-----------~~~f~~SGseA~e~Alk~ar~~~  116 (397)
T TIGR03246        80 LRLAKKLVDATFAD-----------KVFFCNSGAEANEAALKLARRYA  116 (397)
T ss_pred             HHHHHHHHhhCCCC-----------EEEEeCCcHHHHHHHHHHHHHHH
Confidence            34445666666543           37899999999999999999864

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=94.49  E-value=0.26  Score=47.70  Aligned_cols=84  Identities=18%  Similarity=0.093  Sum_probs=59.2

Q ss_pred             ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678         164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG  243 (297)
Q Consensus       164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i  243 (297)
                      ...|...++|+    -++++.|..           ..++|++||.|+.+++.+.    +.               +.-.|
T Consensus        61 ~~~p~~~~le~----~lA~l~g~~-----------~av~~sSGt~Al~~al~~l----l~---------------~Gd~V  106 (433)
T PRK08134         61 ISNPTVAVLEE----RVAALEGGV-----------GAIATASGQAALHLAIATL----MG---------------AGSHI  106 (433)
T ss_pred             CcChHHHHHHH----HHHHHhCCC-----------cEEEeCCHHHHHHHHHHHH----hC---------------CCCEE
Confidence            34577777776    567778764           2699999999999888753    11               11157


Q ss_pred             EecCCCcchHHHHH----HhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         244 YCSDQAHSSVERAG----LLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       244 ~~s~~aH~Si~Kaa----~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +++...|.+.....    .-+|+.++.|+++     |+++|+++|++
T Consensus       107 i~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----d~~~l~~~i~~  148 (433)
T PRK08134        107 VASSALYGGSHNLLHYTLRRFGIETTFVKPG-----DIDGWRAAIRP  148 (433)
T ss_pred             EEeCCccHHHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHhcCC
Confidence            78888887665544    3368888888875     78888888864

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=94.44  E-value=0.7  Score=43.28  Aligned_cols=114  Identities=17%  Similarity=0.102  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccc
Q psy1678         111 WQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEF  190 (297)
Q Consensus       111 ~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~  190 (297)
                      .+..++.+++.+..+....-+ .|+|.-..+. ......+.+...    +       +...+..++.+.+++.+|.+++ 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~-~ylgl~~~~~-~~~~~~~~~~~~----~-------g~~~~~~~Le~~lA~~~g~~~e-   72 (346)
T TIGR03576         7 REKALEIIREKISRGGRDSLY-DLTGLAGGFK-IDEEDLELLETY----V-------GPAIFEEKVQELGREHLGGPEE-   72 (346)
T ss_pred             HHHHHHHHHHHHhccCCcccc-ccccCCCChh-HHHHHHHHHHHh----c-------CCHHHHHHHHHHHHHHcCCCcc-
Confidence            456677777776665433221 3777654432 222233333332    1       2346777888899999999754 


Q ss_pred             cccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe-c-CCCcchHHHHHHhcCCce
Q psy1678         191 LACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC-S-DQAHSSVERAGLLGGVTI  264 (297)
Q Consensus       191 ~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~-s-~~aH~Si~Kaa~~lg~~v  264 (297)
                              ..++++||+++|..++.+--+                  ....+++. + ...|.|+..++++.|.++
T Consensus        73 --------~ilv~~gg~~a~~~~~~al~~------------------~gd~Vli~~~d~p~~~s~~~~~~l~ga~~  122 (346)
T TIGR03576        73 --------KILVFNRTSSAILATILALEP------------------PGRKVVHYLPEKPAHPSIPRSCKLAGAEY  122 (346)
T ss_pred             --------eEEEECCHHHHHHHHHHHhCC------------------CCCEEEECCCCCCCchhHHHHHHHcCCEE
Confidence                    588999999999888876311                  12223332 3 569999999999888754

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=94.40  E-value=0.76  Score=48.51  Aligned_cols=138  Identities=7%  Similarity=0.036  Sum_probs=73.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHcCCCC--CCCCccccccCCCCCCHHHHH--HHHHHHhccccccccccCchhhHHHHHHH
Q psy1678         102 ETAPDTPDTWQEVMSDIERVIMPGVT--HWHSPKFHAYFPTANSYPAIV--ADILSDSIACIGFTWIASPACTELEVVML  177 (297)
Q Consensus       102 ~~lP~~g~~~~~il~~l~~~~~~~~~--~~~~p~~~g~~~s~~~~~svl--~d~l~~~lN~n~~~~~~~p~~~~iE~~v~  177 (297)
                      ..||+ +.+..++++++.+....+-.  .+-.-.|+++.+++.-...++  .+|+++. .  ..-.+.|.+.-++=-+.-
T Consensus        40 l~lp~-~~sE~e~~~~~~~la~~N~~~~~fig~G~y~~~~p~~i~r~v~~~p~~~Tay-t--PyQ~EisQG~Le~l~e~Q  115 (939)
T TIGR00461        40 LQLEA-PSKEYEALAHLKKIASKNHKFKSYIGMGYYGTILPPVIQRNLLENPGWYTAY-T--PYQPEISQGRLEALLNFQ  115 (939)
T ss_pred             CCCCC-CCCHHHHHHHHHHHHhcCCCccccCCCCcCCCcCChHHHHHHHhCchhhhcC-C--CCChhhhhHHHHHHHHHH
Confidence            35664 56889999999887655432  111222333332221111121  2344433 1  122334555433334455


Q ss_pred             HHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH--
Q psy1678         178 DWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER--  255 (297)
Q Consensus       178 ~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K--  255 (297)
                      .|+++|.|++..         ...+..++|.+-= |+..|+...  +             .++-.|++++..|++...  
T Consensus       116 t~i~eLtGm~~a---------NaSl~d~atA~aE-a~~~a~~~~--~-------------~~~~~vlv~~~~hP~~~~v~  170 (939)
T TIGR00461       116 TVVSDLTGLPVA---------NASLLDEGTAAAE-AMALSFNVS--K-------------KKANKFFVAKDLHPQTKSVL  170 (939)
T ss_pred             HHHHHHHCCChh---------hhhccchhhHHHH-HHHHHHHhh--c-------------CCCCEEEECCCCCcchHHHH
Confidence            789999999863         3456666664332 444443211  1             012357889999988663  


Q ss_pred             --HHHhcCCceEEee
Q psy1678         256 --AGLLGGVTIRGLP  268 (297)
Q Consensus       256 --aa~~lg~~v~~Vp  268 (297)
                        -+..+|++|+.++
T Consensus       171 ~t~a~~~g~~v~~~~  185 (939)
T TIGR00461       171 HTRAKPFGIEVIVVD  185 (939)
T ss_pred             HHHHHhcCcEEEEEc
Confidence              3357788887774

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK07568 aspartate aminotransferase; Provisional

Probab=94.34  E-value=0.54  Score=44.37  Aligned_cols=92  Identities=15%  Similarity=0.121  Sum_probs=57.2

Q ss_pred             hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      +...+...+.+|+. ..|.+-+       ...-++|+|||+++..++.+.    +.              ..+ .|+++.
T Consensus        67 g~~~lr~~ia~~~~-~~~~~~~-------~~~i~~t~G~~~al~~~~~~l----~~--------------~gd-~Vl~~~  119 (397)
T PRK07568         67 GIPELREAFAKYYK-KWGIDVE-------PDEILITNGGSEAILFAMMAI----CD--------------PGD-EILVPE  119 (397)
T ss_pred             CCHHHHHHHHHHHH-HhCCCCC-------cceEEEcCChHHHHHHHHHHh----cC--------------CCC-EEEEec
Confidence            44455555555554 2343211       125789999999988776543    11              012 355565


Q ss_pred             CCcchHHHHHHhcCCceEEeeCCC-CC-C-cCHHHHHHHHHH
Q psy1678         248 QAHSSVERAGLLGGVTIRGLPADD-SY-K-LRGDALEAAIEE  286 (297)
Q Consensus       248 ~aH~Si~Kaa~~lg~~v~~Vp~d~-~~-~-md~~~L~~~i~~  286 (297)
                      -.+......+...|++++.||+|. +| . .+++.|++++++
T Consensus       120 p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~  161 (397)
T PRK07568        120 PFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP  161 (397)
T ss_pred             CCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCc
Confidence            555566667788899999999973 33 3 357888888754

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=94.26  E-value=0.43  Score=43.03  Aligned_cols=86  Identities=20%  Similarity=0.245  Sum_probs=69.0

Q ss_pred             HHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHH
Q psy1678         179 WLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGL  258 (297)
Q Consensus       179 ~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~  258 (297)
                      .|++.+|.+.           .-+|.|+-++-+..|.+--.        .          .. .+++-..+||+-.=||.
T Consensus        69 dlaeFlg~D~-----------~R~t~GARe~KfavMhal~~--------~----------gd-~vV~D~~aHYttyvAAE  118 (382)
T COG1103          69 DLAEFLGMDE-----------VRVTAGAREAKFAVMHALCK--------E----------GD-WVVVDSLAHYTTYVAAE  118 (382)
T ss_pred             HHHHHhCCce-----------eeecccchhhHHHHHHHhcc--------C----------CC-EEEEcCcchHHHHHHHH
Confidence            4889999985           56799999888877665311        1          12 45667899999999999


Q ss_pred             hcCCceEEeeCC--CCCCcCHHHHHHHHHHHHHCCCcc
Q psy1678         259 LGGVTIRGLPAD--DSYKLRGDALEAAIEEDLKKGKIP  294 (297)
Q Consensus       259 ~lg~~v~~Vp~d--~~~~md~~~L~~~i~~~~~~G~~P  294 (297)
                      -.|++|..||-.  ++++++++...+.|++-..+|-.|
T Consensus       119 ragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~  156 (382)
T COG1103         119 RAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDP  156 (382)
T ss_pred             hcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCC
Confidence            999999999965  589999999999999998887443

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=94.14  E-value=0.39  Score=45.25  Aligned_cols=83  Identities=23%  Similarity=0.145  Sum_probs=57.7

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|....+|+    .++++.|.+           ..+++++|+.||..++.+...                   +.-.|+
T Consensus        38 ~~p~~~~le~----~la~l~g~~-----------~a~~~~sG~~Ai~~~l~~l~~-------------------~gd~Vl   83 (369)
T cd00614          38 GNPTVDALEK----KLAALEGGE-----------AALAFSSGMAAISTVLLALLK-------------------AGDHVV   83 (369)
T ss_pred             CChhHHHHHH----HHHHHHCCC-----------CEEEEcCHHHHHHHHHHHHcC-------------------CCCEEE
Confidence            4677777886    566677764           378899999999998887511                   111466


Q ss_pred             ecCCCcchHHH----HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSVER----AGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si~K----aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...|.+...    .+...|++++.++.+     |+++|+++|++
T Consensus        84 ~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~  124 (369)
T cd00614          84 ASDDLYGGTYRLFERLLPKLGIEVTFVDPD-----DPEALEAAIKP  124 (369)
T ss_pred             ECCCCcchHHHHHHHHHhhcCeEEEEeCCC-----CHHHHHHhcCC
Confidence            77788877654    455678888888765     47778777753

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=94.13  E-value=0.25  Score=45.72  Aligned_cols=74  Identities=20%  Similarity=0.103  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH
Q psy1678         174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV  253 (297)
Q Consensus       174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si  253 (297)
                      .++.+++++++|.+++         .-++|+|+++++... ..+    +.               +. .|++.+-++.++
T Consensus        50 ~~lr~~la~~~~~~~~---------~i~~t~G~~~~i~~~-~~~----l~---------------~g-~vl~~~p~y~~~   99 (330)
T TIGR01140        50 DELRAAAAAYYGLPAA---------SVLPVNGAQEAIYLL-PRL----LA---------------PG-RVLVLAPTYSEY   99 (330)
T ss_pred             HHHHHHHHHHhCCChh---------hEEECCCHHHHHHHH-HHH----hC---------------CC-eEEEeCCCcHHH
Confidence            3456788888887643         578899988876653 221    11               12 355567788888


Q ss_pred             HHHHHhcCCceEEeeCCCCCCcCHHHHHHHH
Q psy1678         254 ERAGLLGGVTIRGLPADDSYKLRGDALEAAI  284 (297)
Q Consensus       254 ~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i  284 (297)
                      ...+...|++++.+|       |++.|++.+
T Consensus       100 ~~~~~~~g~~~~~~~-------d~~~l~~~~  123 (330)
T TIGR01140       100 ARAWRAAGHEVVELP-------DLDRLPAAL  123 (330)
T ss_pred             HHHHHHcCCEEEEeC-------CHHHHHhhc
Confidence            888888898888776       566666655

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=94.10  E-value=0.38  Score=44.63  Aligned_cols=78  Identities=17%  Similarity=0.077  Sum_probs=54.8

Q ss_pred             hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      ....+.+.+.+|+.+. +.+++         .-++|+|+++++..++.+.      .                 .|++.+
T Consensus        57 ~~~~Lr~aia~~~~~~-~~~~~---------~i~it~Ga~~~i~~~~~~~------d-----------------~v~v~~  103 (335)
T PRK14808         57 PDEELIEKILSYLDTD-FLSKN---------NVSVGNGADEIIYVMMLMF------D-----------------RSVFFP  103 (335)
T ss_pred             ChHHHHHHHHHHhCCC-CCCcc---------eEEEcCCHHHHHHHHHHHh------C-----------------cEEECC
Confidence            3444555555555443 25543         5889999999998777542      0                 144566


Q ss_pred             CCcchHHHHHHhcCCceEEeeCCCCCCcCHH
Q psy1678         248 QAHSSVERAGLLGGVTIRGLPADDSYKLRGD  278 (297)
Q Consensus       248 ~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~  278 (297)
                      -+++....+++..|.+++.||.|+++.++..
T Consensus       104 P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~  134 (335)
T PRK14808        104 PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEV  134 (335)
T ss_pred             CCHHHHHHHHHHcCCeEEEecCCCcCCCChh
Confidence            7888899999999999999999988776643

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=94.03  E-value=0.27  Score=47.24  Aligned_cols=84  Identities=17%  Similarity=0.150  Sum_probs=56.1

Q ss_pred             ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678         164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG  243 (297)
Q Consensus       164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i  243 (297)
                      ...|....+|+    .++++.|.+           ..++|++|+.++..++.+...    .              .. .|
T Consensus        54 ~~~p~~~~le~----~lA~l~g~~-----------~~v~~~sG~~Ai~~al~~l~~----~--------------Gd-~V   99 (418)
T TIGR01326        54 LMNPTTDVLEQ----RIAALEGGV-----------AALAVASGQAAITYAILNLAQ----A--------------GD-NI   99 (418)
T ss_pred             CCChhHHHHHH----HHHHHhCCC-----------eEEEEccHHHHHHHHHHHHhC----C--------------CC-EE
Confidence            34455555554    678888864           379999999999888876521    0              11 35


Q ss_pred             EecCCCcc----hHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         244 YCSDQAHS----SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       244 ~~s~~aH~----Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +++...|.    .+.+.+..+|+.++.|+.+     |+++|+++|.+
T Consensus       100 l~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~  141 (418)
T TIGR01326       100 VSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD-----DPEEFEKAIDE  141 (418)
T ss_pred             EEECCCcHHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCc
Confidence            55666553    3355667789888888754     78888877753

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=93.93  E-value=0.53  Score=44.60  Aligned_cols=81  Identities=19%  Similarity=0.163  Sum_probs=53.0

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      .|....+|+    -+++++|.+           ..+++++|+.++..++.+.    +.              ... .|++
T Consensus        53 ~p~~~~le~----~la~l~g~~-----------~~~~~~sG~~Ai~~al~al----~~--------------~Gd-~Vl~   98 (380)
T TIGR01325        53 NPTVAAFEE----RIAALEGAE-----------RAVATATGMSAIQAALMTL----LQ--------------AGD-HVVA   98 (380)
T ss_pred             CchHHHHHH----HHHHHhCCC-----------cEEEECCHHHHHHHHHHHH----hC--------------CCC-EEEE
Confidence            455556664    567788874           3688999999999888653    11              011 3455


Q ss_pred             cCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         246 SDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       246 s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      +...|.+    +.+.+..+|++++.|+.+     |+++|+++|+
T Consensus        99 ~~~~~~~t~~~~~~~~~~~g~~v~~v~~~-----d~~~l~~~i~  137 (380)
T TIGR01325        99 SRSLFGSTVGFISEILPRFGIEVSFVDPT-----DLNAWEAAVK  137 (380)
T ss_pred             ecCCcchHHHHHHHHHHHhCCEEEEECCC-----CHHHHHHhcC
Confidence            6666644    344566678888888765     6777777664

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PLN02672 methionine S-methyltransferase

Probab=93.81  E-value=0.76  Score=49.22  Aligned_cols=90  Identities=14%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc
Q psy1678         172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS  251 (297)
Q Consensus       172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~  251 (297)
                      +-..+.+|+++..|++.+.      ...-++|+|+++++..++.+-    ..               +.-.|++..-+.+
T Consensus       735 lr~aLa~~la~~~Gv~~d~------~e~IIvt~Gs~elL~lll~aL----l~---------------pGD~VLVp~PtY~  789 (1082)
T PLN02672        735 PRPSILQFIKSNYGFPTDS------CTEFVYGDTSLALFNKLVLCC----VQ---------------EGGTLCFPAGSNG  789 (1082)
T ss_pred             HHHHHHHHHHHHhCcCCCC------CCEEEEeCCHHHHHHHHHHHH----cC---------------CCCEEEEeCCChH
Confidence            4467889999999997531      013555666555554444332    11               1124556777888


Q ss_pred             hHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         252 SVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       252 Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                      ....++...|.+++.||+++  .+++|++.|++++++
T Consensus       790 ~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~  826 (1082)
T PLN02672        790 TYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLET  826 (1082)
T ss_pred             HHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc
Confidence            88999999999999999973  579999999998853

>PRK05367 glycine dehydrogenase; Provisional

Probab=93.78  E-value=0.93  Score=48.21  Aligned_cols=145  Identities=13%  Similarity=0.136  Sum_probs=81.3

Q ss_pred             hhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCcccc--ccCCCCCCHHHHHH-------HHHHHhcccccccc
Q psy1678          93 PGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFH--AYFPTANSYPAIVA-------DILSDSIACIGFTW  163 (297)
Q Consensus        93 p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~--g~~~s~~~~~svl~-------d~l~~~lN~n~~~~  163 (297)
                      |..++..-+..+| .+.+..++++++++...++.. +.  .|.  |+..  .-.++++.       .|+++. .+  .-.
T Consensus        43 P~~i~~~~~l~lp-~~~sE~e~~~~~~~la~~N~~-~~--~~ig~G~y~--~~~P~vi~~~i~~~~~~~t~y-tP--yQ~  113 (954)
T PRK05367         43 PASIRLAEPLDLP-AALSEAEALAELRAIASKNKV-FR--SYIGQGYYG--THTPPVILRNILENPAWYTAY-TP--YQP  113 (954)
T ss_pred             CHHHhcCCCCCCC-CCCCHHHHHHHHHHHHhcCCC-CC--cccCCCCCC--CcCcHHHHHHHHhCcchhhcc-CC--CCh
Confidence            4444322234555 357899999999988665533 11  122  2222  12233332       333322 11  112


Q ss_pred             ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678         164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG  243 (297)
Q Consensus       164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i  243 (297)
                      +.|.+.-++=-+.-.++|+|.|.+..         .-.++.++|.+-- |+..++....      +         ++-.|
T Consensus       114 EisQG~Leal~~~Qt~la~LtG~~~a---------naSl~d~aTAa~e-a~~~a~~~~~------~---------~~~~v  168 (954)
T PRK05367        114 EISQGRLEALLNFQTMVADLTGLEIA---------NASLLDEATAAAE-AMALAKRVSK------S---------KSNRF  168 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCChh---------hccccccHHHHHH-HHHHhhhhcc------C---------CCCEE
Confidence            33444333333456789999999863         4667777776554 4444443210      0         01268


Q ss_pred             EecCCCcchHHHH----HHhcCCceEEeeCCC
Q psy1678         244 YCSDQAHSSVERA----GLLGGVTIRGLPADD  271 (297)
Q Consensus       244 ~~s~~aH~Si~Ka----a~~lg~~v~~Vp~d~  271 (297)
                      ++++..|++....    ++-.|++|+.+|.++
T Consensus       169 lv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~  200 (954)
T PRK05367        169 FVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK  200 (954)
T ss_pred             EEcCccCHHHHHHHHHHHHhCCCEEEEecCcc
Confidence            8999999997743    466899988888754

>PRK05839 hypothetical protein; Provisional

Probab=93.74  E-value=1.5  Score=41.29  Aligned_cols=80  Identities=8%  Similarity=-0.061  Sum_probs=52.2

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ...+-+.+.+|+.+..|.+-.       ...-++|+|++++....+.+...   .              .+.-.|++..-
T Consensus        62 ~~~lr~aia~~l~~~~g~~~~-------~~~I~it~G~~~al~~~~~~~~~---~--------------~~gd~vlv~~P  117 (374)
T PRK05839         62 EESLREAQRGFFKRRFKIELK-------ENELIPTFGTREVLFNFPQFVLF---D--------------KQNPTIAYPNP  117 (374)
T ss_pred             CHHHHHHHHHHHHHHhCCCCC-------cceEEEecCcHHHHHHHHHHHhc---C--------------CCCCEEEECCC
Confidence            346666788899988885311       02588999999887665543210   0              01124556666


Q ss_pred             CcchHHHHHHhcCCceEEeeCCCC
Q psy1678         249 AHSSVERAGLLGGVTIRGLPADDS  272 (297)
Q Consensus       249 aH~Si~Kaa~~lg~~v~~Vp~d~~  272 (297)
                      +......++...|++++.||++++
T Consensus       118 ~y~~~~~~~~~~g~~v~~v~~~~~  141 (374)
T PRK05839        118 FYQIYEGAAIASRAKVLLMPLTKE  141 (374)
T ss_pred             CchhhHHHHHhcCCEEEEeecccc
Confidence            777778888888888888888743

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=93.73  E-value=0.37  Score=46.64  Aligned_cols=89  Identities=13%  Similarity=0.046  Sum_probs=62.2

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|..+|....+|+    .+++++|++.           .++|++||.|...+. .+   .++              ... 
T Consensus        66 ~yag~~s~~~lE~----~va~~~G~~~-----------av~v~sGT~Al~ll~-~l---~l~--------------pGD-  111 (450)
T TIGR02618        66 AYAGSRNFYHLER----TVRELYGFKY-----------VVPTHQGRGAENLLS-QI---AIK--------------PGD-  111 (450)
T ss_pred             hhcCCCcHHHHHH----HHHHHHCCCe-----------EEEcCCHHHHHHHHH-Hh---CCC--------------CcC-
Confidence            5888999999997    5567889873           899999999954321 11   111              012 


Q ss_pred             EEEecCCCcchHHHH-HHhcCCceEEeeCC----------CCCCcCHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERA-GLLGGVTIRGLPAD----------DSYKLRGDALEAAIEE  286 (297)
Q Consensus       242 ~i~~s~~aH~Si~Ka-a~~lg~~v~~Vp~d----------~~~~md~~~L~~~i~~  286 (297)
                      .|  +...|++-.++ ..+.|...+-|++|          .+|.||+++|+++|.+
T Consensus       112 eV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~  165 (450)
T TIGR02618       112 YV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDE  165 (450)
T ss_pred             EE--CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhcc
Confidence            23  55788777777 57778755556543          3699999999999985

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=93.56  E-value=0.59  Score=43.19  Aligned_cols=76  Identities=13%  Similarity=0.064  Sum_probs=52.9

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+.+++.+|.+..         .-++|+|++++...++.+     +.              ..+ +++. +-+.+...
T Consensus        44 ~lr~~ia~~~~~~~~---------~I~it~Gs~~~l~~~~~~-----~~--------------~~~-vv~~-~P~y~~y~   93 (332)
T PRK06425         44 DIEDQIKIYTQGLKI---------KVLIGPGLTHFIYRLLSY-----IN--------------VGN-IIIV-EPNFNEYK   93 (332)
T ss_pred             HHHHHHHHHhCCCcc---------eEEECCCHHHHHHHHHHH-----hC--------------CCc-EEEe-CCChHHHH
Confidence            456678888888764         588999999988765532     11              112 3333 56777788


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALE  281 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~  281 (297)
                      .+++..|.+++.||+|+ ..+|++.++
T Consensus        94 ~~~~~~G~~v~~vp~~~-~~~~~~~l~  119 (332)
T PRK06425         94 GYAFTHGIRISALPFNL-INNNPEILN  119 (332)
T ss_pred             HHHHHcCCeEEEEeCCc-ccCcHHHHh
Confidence            89999999999999876 455655544

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=93.36  E-value=1.1  Score=42.23  Aligned_cols=40  Identities=15%  Similarity=0.062  Sum_probs=32.9

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      .....++.++++++.|.+           .-+||+||++||..|+.++|..
T Consensus        80 ~~~~~~la~~l~~~~~~~-----------~v~~~~gg~eA~~~al~~a~~~  119 (396)
T PRK02627         80 IEPQEELAEKLVELSGMD-----------KVFFCNSGAEANEAAIKLARKY  119 (396)
T ss_pred             CHHHHHHHHHHHhhcCCC-----------EEEECCCcHHHHHHHHHHHHHH
Confidence            456667778888887764           3889999999999999999875

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=93.30  E-value=1.4  Score=43.66  Aligned_cols=118  Identities=11%  Similarity=0.014  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhccccccccc-cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHH-HHHHH
Q psy1678         146 AIVADILSDSIACIGFTWI-ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAK-AKTMQ  223 (297)
Q Consensus       146 svl~d~l~~~lN~n~~~~~-~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR-~~~~~  223 (297)
                      .++-++....++.+   |. ........|+.+-.|+.+.++.....    ...-.-++|+|||++..+++.+-. +..+.
T Consensus       110 ~~~~~~~~~~~~~~---Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~----~~~~~V~it~Gat~al~~~~~~l~~~~ll~  182 (521)
T TIGR03801       110 AFLYEMCDGIIGDN---YPVPDRMLPHSEKIVHQYLIQEMCGNKPP----PGEFDLFAVEGGTAAMCYIFDSLKANELLK  182 (521)
T ss_pred             HHHHHHHHHhhcCC---CCCCCCCHHHHHHHHHHHHHhhccCCCCC----CCcCeEEEeCCHHHHHHHHHHHHhHhhcCC
Confidence            34455555555432   32 22334557766667877765532110    000147899999999988876522 22211


Q ss_pred             HHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhc--CCceEEeeCCC--C-----CCcCHHHHHHHHH
Q psy1678         224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLG--GVTIRGLPADD--S-----YKLRGDALEAAIE  285 (297)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~l--g~~v~~Vp~d~--~-----~~md~~~L~~~i~  285 (297)
                                     +.-.|++..-+.......+.+.  |+.++.|++++  .     +++|.++|+++++
T Consensus       183 ---------------pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~  238 (521)
T TIGR03801       183 ---------------KGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD  238 (521)
T ss_pred             ---------------CCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcC
Confidence                           1124555666666777777776  45677777753  2     7899999987654

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=93.07  E-value=3.9  Score=38.15  Aligned_cols=106  Identities=14%  Similarity=0.112  Sum_probs=69.4

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCC-ccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLP-KEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN  240 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~-~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~  240 (297)
                      .|....+...+.+.+.+|+.+..|.+ -+       ...-++|+|+++++..++.+..   +.               +.
T Consensus        57 ~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~-------~~~I~it~G~~~~i~~~~~~l~---~~---------------~g  111 (364)
T PRK07865         57 GYPTTAGTPELREAIVGWLARRRGVTGLD-------PAAVLPVIGSKELVAWLPTLLG---LG---------------PG  111 (364)
T ss_pred             CCCCccCCHHHHHHHHHHHHHHcCCCCCC-------cccEEEccChHHHHHHHHHHHc---CC---------------CC
Confidence            34444445577888999999988764 21       1268899999998866443320   10               11


Q ss_pred             eEEEecCCCcchHHHHHHhcCCceEEee------------------CCCCC-CcCHHHHHHHHHHHHHCCC
Q psy1678         241 LVGYCSDQAHSSVERAGLLGGVTIRGLP------------------ADDSY-KLRGDALEAAIEEDLKKGK  292 (297)
Q Consensus       241 ~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp------------------~d~~~-~md~~~L~~~i~~~~~~G~  292 (297)
                      -.|++.+-+|+++..++..+|.+++.++                  -++.| .|+.+.+++.++-+.+.|.
T Consensus       112 d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~  182 (364)
T PRK07865        112 DVVVIPELAYPTYEVGARLAGATVVRADSLTELGPQRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGA  182 (364)
T ss_pred             CEEEECCCCcccHHHHHHhcCCEEEecCChhhCCcccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCC
Confidence            2466778889999999988887554442                  23444 4577888888877777663

>KOG0259|consensus

Probab=93.00  E-value=0.82  Score=43.09  Aligned_cols=100  Identities=13%  Similarity=0.137  Sum_probs=61.3

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |.-+.+.-..-+.|.+++-+-+...-+.       -+-++|+|-++|+=+++.+-     .+              ++-.
T Consensus        99 Yaps~G~~~AR~AVAeYl~~~l~~kl~a-------~DV~ltsGC~qAIe~~i~~L-----A~--------------p~aN  152 (447)
T KOG0259|consen   99 YAPSVGILPARRAVAEYLNRDLPNKLTA-------DDVVLTSGCSQAIELAISSL-----AN--------------PGAN  152 (447)
T ss_pred             cCCccccHHHHHHHHHHhhcCCCCccCc-------CceEEeccchHHHHHHHHHh-----cC--------------CCCc
Confidence            3334344444455555555544433211       26889999999998887762     11              1223


Q ss_pred             EEecCCCcchHHH-HHHhcCCceEEeeC--CCCCCcCHHHHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVER-AGLLGGVTIRGLPA--DDSYKLRGDALEAAIEEDLK  289 (297)
Q Consensus       243 i~~s~~aH~Si~K-aa~~lg~~v~~Vp~--d~~~~md~~~L~~~i~~~~~  289 (297)
                      |+.+.-+ |++.. -|.+.|+.||+...  .+++++|.+.+|+.+++.+.
T Consensus       153 ILlPrPG-fp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~  201 (447)
T KOG0259|consen  153 ILLPRPG-FPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTV  201 (447)
T ss_pred             eecCCCC-CchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCee
Confidence            4444322 23333 35678999998775  57899999999999988664

>PLN02242 methionine gamma-lyase

Probab=92.90  E-value=0.42  Score=46.03  Aligned_cols=83  Identities=11%  Similarity=-0.007  Sum_probs=53.6

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|....+|+    .++++.|...           .++|+||++++..++.+.-.                  ... .|+
T Consensus        74 ~~Pt~~~LE~----~lA~l~g~~~-----------~l~~~sG~~Ai~~al~al~~------------------~GD-~Vl  119 (418)
T PLN02242         74 FNPTVLNLGR----QMAALEGTEA-----------AYCTASGMSAISSVLLQLCS------------------SGG-HVV  119 (418)
T ss_pred             CChhHHHHHH----HHHHHhCCCe-----------EEEEccHHHHHHHHHHHHhC------------------CCC-EEE
Confidence            3577777776    6778888853           67899999999988876411                  011 355


Q ss_pred             ecCCCcchHHHHH-----HhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSVERAG-----LLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si~Kaa-----~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...+......+     +..|+.++.++.+     |+++|+++|++
T Consensus       120 ~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~-----d~e~l~~~i~~  161 (418)
T PLN02242        120 ASNTLYGGTHALLAHFLPRKCNITTTFVDIT-----DLEAVKKAVVP  161 (418)
T ss_pred             EcCCcHHHHHHHHHHhhhhccCceEEEcCCC-----CHHHHHHhcCc
Confidence            6666544444433     3456666655543     78888877753

>PLN02955 8-amino-7-oxononanoate synthase

Probab=92.84  E-value=1.7  Score=42.50  Aligned_cols=95  Identities=9%  Similarity=0.030  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH--HHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT--MQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~--~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      .+..++=+.|++++|.+.           .++.+.|..||+.++.+--.-.  +...   +    .....+..+|++=+.
T Consensus       147 ~~h~~LE~~LA~f~g~e~-----------all~sSGy~AN~~~i~aL~~~~~~~~~~---~----~~~~~~~d~i~~D~~  208 (476)
T PLN02955        147 TYHRLLESSLADLKKKED-----------CLVCPTGFAANMAAMVAIGSVASLLAAS---G----KPLKNEKVAIFSDAL  208 (476)
T ss_pred             HHHHHHHHHHHHHHCCCc-----------EEEECChHHHHHHHHHHHhhcccccccc---c----cccCCCCcEEEEecc
Confidence            344445567889999874           6788889999998886631100  0000   0    000123457788899


Q ss_pred             CcchHHHHHHhc----CCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678         249 AHSSVERAGLLG----GVTIRGLPADDSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       249 aH~Si~Kaa~~l----g~~v~~Vp~d~~~~md~~~L~~~i~~~~  288 (297)
                      .|.|+..++++.    +..+++.+     .-|+++|++.|++..
T Consensus       209 ~HaSI~dG~~ls~~~~~a~~~~f~-----HND~~~Le~~L~~~~  247 (476)
T PLN02955        209 NHASIIDGVRLAERQGNVEVFVYR-----HCDMYHLNSLLSSCK  247 (476)
T ss_pred             chHHHHHHHHhccccCCceEEEeC-----CCCHHHHHHHHHhCC
Confidence            999999999987    45555554     347899999997654

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=92.75  E-value=1.3  Score=42.27  Aligned_cols=41  Identities=15%  Similarity=-0.013  Sum_probs=32.6

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      .++.|.++.++|++..+++           .-+|+++|||||..|+++||.+
T Consensus        76 ~~~~~~~la~~l~~~~~~~-----------~v~f~~SGseA~e~Aik~ar~~  116 (395)
T PRK03715         76 YNEPMAKLAGLLTQHSCFD-----------KVFFANSGAEANEGAIKLARKW  116 (395)
T ss_pred             cCHHHHHHHHHHhhccCCC-----------EEEEeCCcHHHHHHHHHHHHHH
Confidence            3567777777887765443           3789999999999999999975

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=92.73  E-value=0.93  Score=43.83  Aligned_cols=85  Identities=15%  Similarity=0.149  Sum_probs=57.3

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      ....|....+|+    .++++.|.+           ..++|++|+.++..++.+.    +.              ... .
T Consensus        60 r~~~p~~~~Le~----~lA~leg~~-----------~al~~~sG~~Ai~~al~~l----l~--------------~GD-~  105 (431)
T PRK08248         60 RIMNPTTDVFEK----RIAALEGGI-----------GALAVSSGQAAITYSILNI----AS--------------AGD-E  105 (431)
T ss_pred             CCCCchHHHHHH----HHHHHhCCC-----------cEEEECCHHHHHHHHHHHH----hC--------------CCC-E
Confidence            344676677776    577888854           4899999999998888653    11              012 4


Q ss_pred             EEecCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      |+++...|..    +.+.+..+|++++.|+++     |+++|+++|++
T Consensus       106 Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~-----d~e~l~~ai~~  148 (431)
T PRK08248        106 IVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS-----DPENFEAAITD  148 (431)
T ss_pred             EEEccCchhhHHHHHHHHHHhCCEEEEEECCC-----CHHHHHHhcCC
Confidence            5667766643    334566678888888763     78888877753

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=92.73  E-value=0.93  Score=43.93  Aligned_cols=85  Identities=15%  Similarity=0.098  Sum_probs=56.5

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|....+|+    .++++.|.+           ..+++++|+.|+..++.+.    +.               +.-.|+
T Consensus        67 ~~pt~~~le~----~la~l~g~~-----------~~v~fsSG~~Ai~~al~~l----l~---------------~Gd~VI  112 (437)
T PRK05613         67 TNPTVEALEN----RIASLEGGV-----------HAVAFASGQAAETAAILNL----AG---------------AGDHIV  112 (437)
T ss_pred             cChHHHHHHH----HHHHHhCCC-----------eEEEeCCHHHHHHHHHHHh----cC---------------CCCEEE
Confidence            4566666665    677888874           2667777778887666543    11               112577


Q ss_pred             ecCCCcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         245 CSDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       245 ~s~~aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      ++...|.+..    +.+.-+|+.++.|+ +..   |+++|+++|++.
T Consensus       113 ~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~~~---d~e~l~~~l~~~  155 (437)
T PRK05613        113 TSPRLYGGTETLFLVTLNRLGIEVTFVE-NPD---DPESWQAAVQPN  155 (437)
T ss_pred             ECCCccHHHHHHHHHHHHhcCeEEEEEC-CCC---CHHHHHHhCCcc
Confidence            8888998874    34455788888887 332   888888888653

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=92.70  E-value=0.85  Score=43.18  Aligned_cols=39  Identities=21%  Similarity=0.273  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      .++.+++++++|.+..        ...+||+|||++|..|++++|..
T Consensus        88 ~~la~~l~~~~~~~~~--------~~v~~~~sgsea~~~al~~~~~~  126 (398)
T PRK03244         88 IALAERLVELLGAPEG--------GRVFFCNSGAEANEAAFKLARLT  126 (398)
T ss_pred             HHHHHHHHHhCCCCCC--------CEEEEeCchHHHHHHHHHHHHHH
Confidence            4667788898885421        14899999999999999999863

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=92.68  E-value=2.4  Score=40.32  Aligned_cols=37  Identities=14%  Similarity=-0.042  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      .++.+.|+++.+.+           .-.|+++||+||..|++.||.+.
T Consensus        85 ~~l~~~l~~~~~~~-----------~~~~~~sGseA~e~a~klar~~~  121 (403)
T PRK05093         85 LRLAKKLIDATFAE-----------RVFFANSGAEANEAAFKLARRYA  121 (403)
T ss_pred             HHHHHHHHhhCCCC-----------EEEEeCchHHHHHHHHHHHHHHH
Confidence            34556667776543           37889999999999999999874

>PRK07050 cystathionine beta-lyase; Provisional

Probab=92.64  E-value=0.56  Score=44.74  Aligned_cols=70  Identities=17%  Similarity=0.115  Sum_probs=47.2

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      .|....+|+    .++++.|..           ..++|+|||+++..++.+.    ++               +.-.|++
T Consensus        64 ~pt~~~Le~----~lA~l~g~~-----------~~l~~~sgt~Ai~~~l~al----~~---------------~GD~Vl~  109 (394)
T PRK07050         64 TPTSLALAQ----RLAEIEGGR-----------HALLQPSGLAAISLVYFGL----VK---------------AGDDVLI  109 (394)
T ss_pred             CHHHHHHHH----HHHHHhCCC-----------eEEEeccHHHHHHHHHHHH----hC---------------CCCEEEE
Confidence            455556665    677888853           3889999999999988764    11               1124667


Q ss_pred             cCCCcchHH----HHHHhcCCceEEeeC
Q psy1678         246 SDQAHSSVE----RAGLLGGVTIRGLPA  269 (297)
Q Consensus       246 s~~aH~Si~----Kaa~~lg~~v~~Vp~  269 (297)
                      +...|.+..    ..+..+|++++.++.
T Consensus       110 ~~~~y~~~~~~~~~~~~~~Gi~v~~vd~  137 (394)
T PRK07050        110 PDNAYGPNRDHGEWLARDFGITVRFYDP  137 (394)
T ss_pred             ecCCcccHHHHHHHHHHhcCeEEEEECC
Confidence            777887644    455667887776654

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=92.61  E-value=2.8  Score=39.84  Aligned_cols=84  Identities=13%  Similarity=-0.025  Sum_probs=50.6

Q ss_pred             cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678         161 FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN  240 (297)
Q Consensus       161 ~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~  240 (297)
                      ..|...++...+-+.+.+|+.+..|++-+.       -.-++|+|++++... +..    .+.               +.
T Consensus        70 ~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-------~~I~it~Ga~~al~~-l~~----~~~---------------~g  122 (409)
T PRK07590         70 RGYGPEQGYDFLREKIAENDYQARGCDISA-------DEIFISDGAKCDTGN-ILD----IFG---------------PD  122 (409)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHhcCCcCCh-------hhEEECCCHHHHHHH-HHH----hcC---------------CC
Confidence            345445566677777888887777664221       257889999988654 221    111               11


Q ss_pred             eEEEecCCCcchHHHHHHhcCCc-----------eEEeeCCC
Q psy1678         241 LVGYCSDQAHSSVERAGLLGGVT-----------IRGLPADD  271 (297)
Q Consensus       241 ~~i~~s~~aH~Si~Kaa~~lg~~-----------v~~Vp~d~  271 (297)
                      -.|++.+-+.+....++...|..           ++.||+|+
T Consensus       123 d~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~  164 (409)
T PRK07590        123 NTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTA  164 (409)
T ss_pred             CEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeeccc
Confidence            13445555666667777777765           66777653

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=92.55  E-value=0.53  Score=44.84  Aligned_cols=83  Identities=14%  Similarity=0.135  Sum_probs=53.5

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|....+|+    .++++.|.+.           .+++++|+.++..++.+.    +.              ... .|+
T Consensus        57 ~~p~~~~le~----~lA~l~g~~~-----------av~~~sG~~Ai~~~l~al----~~--------------~Gd-~Vi  102 (391)
T TIGR01328        57 GNPTVSNLEG----RIAFLEGTEA-----------AVATSSGMGAIAATLLTI----LK--------------AGD-HLI  102 (391)
T ss_pred             CCchHHHHHH----HHHHHhCCCc-----------EEEECCHHHHHHHHHHHH----hC--------------CCC-EEE
Confidence            4566667776    6788888753           788999999888766543    11              012 355


Q ss_pred             ecCCCcc----hHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHS----SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~----Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...|.    .+.+.+..+|+.++.++.+     |+++++++|.+
T Consensus       103 ~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~-----d~e~l~~~i~~  143 (391)
T TIGR01328       103 SDECLYGCTFALLEHALTKFGIQVDFINMA-----IPEEVKAHIKD  143 (391)
T ss_pred             EecCcchHHHHHHHHHHhcCCeEEEEECCC-----CHHHHHHhhcc
Confidence            6666553    3445566678777777665     67777777653

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK06234 methionine gamma-lyase; Provisional

Probab=92.48  E-value=0.74  Score=43.97  Aligned_cols=83  Identities=17%  Similarity=0.153  Sum_probs=54.4

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|....+|+    .++++.|.+           ..++++||+.++..++.+.    +.              ... .|+
T Consensus        62 ~~p~~~~Le~----~iA~~~g~~-----------~~l~~~sG~~Ai~~al~~l----l~--------------~Gd-~Vl  107 (400)
T PRK06234         62 GNPTSTEVEN----KLALLEGGE-----------AAVVAASGMGAISSSLWSA----LK--------------AGD-HVV  107 (400)
T ss_pred             CCccHHHHHH----HHHHHhCCC-----------cEEEEcCHHHHHHHHHHHH----hC--------------CCC-EEE
Confidence            4577777776    455666653           3688999999987776542    11              012 456


Q ss_pred             ecCCCcchH----HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSV----ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si----~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...|.+.    .+.+...|++++.++.+     |+++|+++|.+
T Consensus       108 ~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-----d~e~l~~~i~~  148 (400)
T PRK06234        108 ASDTLYGCTFALLNHGLTRYGVEVTFVDTS-----NLEEVRNALKA  148 (400)
T ss_pred             EecCccchHHHHHHHHHhhCCeEEEEECCC-----CHHHHHHHhcc
Confidence            676766543    34556788888887754     78888887754

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=92.43  E-value=1.4  Score=42.44  Aligned_cols=82  Identities=16%  Similarity=0.050  Sum_probs=54.5

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      .|....+|+    .++++.|.+           ..+++++|+.|+..++.+..    .               +.-.|++
T Consensus        62 ~p~~~~le~----~lA~l~g~~-----------~al~~~SG~~Ai~~al~all----~---------------pGd~VIv  107 (427)
T PRK05994         62 NPTNAVLEE----RVAALEGGT-----------AALAVASGHAAQFLVFHTLL----Q---------------PGDEFIA  107 (427)
T ss_pred             CccHHHHHH----HHHHHhCCC-----------cEEEEcCHHHHHHHHHHHHh----C---------------CCCEEEE
Confidence            455556665    667778775           37889999999998877641    1               1114566


Q ss_pred             cCCCcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +...|.+..    ..+..+|+.++.|+++     |+++|+++|++
T Consensus       108 ~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~  147 (427)
T PRK05994        108 ARKLYGGSINQFGHAFKSFGWQVRWADAD-----DPASFERAITP  147 (427)
T ss_pred             ecCcchhHHHHHHHHHHhcCcEEEEECCC-----CHHHHHHhcCc
Confidence            777777543    3455678888777754     67777777753

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=92.37  E-value=0.76  Score=44.66  Aligned_cols=89  Identities=15%  Similarity=0.026  Sum_probs=60.7

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|..+|....+|+    .+++++|.+.           .++|+.||.|+..+..+    ..+              ... 
T Consensus        73 ~Yagd~s~~~LE~----~vAe~lG~e~-----------aV~v~sGTaAl~ll~~l----~v~--------------pGd-  118 (460)
T PRK13237         73 AYAGSRNFYHLEE----TVQEYYGFKH-----------VVPTHQGRGAENLLSRI----AIK--------------PGQ-  118 (460)
T ss_pred             hhcCCCcHHHHHH----HHHHHHCCCe-----------EEEeCCHHHHHHHHHHh----CCC--------------CcC-
Confidence            4788899999998    4567788863           88999999998874221    111              012 


Q ss_pred             EEEecCCCcchHHHH-HHhcCCceEEeeC----------CCCCCcCHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERA-GLLGGVTIRGLPA----------DDSYKLRGDALEAAIEE  286 (297)
Q Consensus       242 ~i~~s~~aH~Si~Ka-a~~lg~~v~~Vp~----------d~~~~md~~~L~~~i~~  286 (297)
                      +|  +...|++-.++ ....|...+-|.+          ..+|.||++.|++.|.+
T Consensus       119 ~V--p~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~  172 (460)
T PRK13237        119 YV--PGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDE  172 (460)
T ss_pred             EE--CCccchHhhHHHHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhcc
Confidence            22  66778877777 5556663333321          23799999999999975

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=92.34  E-value=2.4  Score=39.64  Aligned_cols=39  Identities=18%  Similarity=0.010  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      ....++-+++++++|.+           ..+++.||+++|..++.++|..
T Consensus        69 ~~~~~l~~~la~~~g~~-----------~~~~~~sg~~a~~~a~~~~~~~  107 (379)
T TIGR00707        69 EPQEELAEKLVEHSGAD-----------RVFFCNSGAEANEAALKLARKY  107 (379)
T ss_pred             HHHHHHHHHHHhhCCCC-----------EEEEeCCcHHHHHHHHHHHHHH
Confidence            34555667888888875           3789999999999999988753

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK05968 hypothetical protein; Provisional

Probab=92.31  E-value=1.6  Score=41.47  Aligned_cols=80  Identities=14%  Similarity=0.086  Sum_probs=51.8

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      .|....+|+    .+++++|.+.           .+++++|+.++..++.+.    +.              ..+ .|++
T Consensus        62 ~p~~~~le~----~lA~l~g~~~-----------av~~~sG~~Ai~~al~al----~~--------------~Gd-~Vl~  107 (389)
T PRK05968         62 NPTVRAFEE----MLAKLEGAED-----------ARGFASGMAAISSTVLSF----VE--------------PGD-RIVA  107 (389)
T ss_pred             ChhHHHHHH----HHHHHhCCCc-----------EEEECCHHHHHHHHHHHH----hC--------------CCC-EEEE
Confidence            455566665    6688888853           567788888887777542    11              012 4566


Q ss_pred             cCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHH
Q psy1678         246 SDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAAI  284 (297)
Q Consensus       246 s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i  284 (297)
                      +...|.+    +.+.+...|++++.++.+     |++.|++++
T Consensus       108 ~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i  145 (389)
T PRK05968        108 VRHVYPDAFRLFETILKRMGVEVDYVDGR-----DEEAVAKAL  145 (389)
T ss_pred             eCCCchHHHHHHHHHHHHcCceEEEeCCC-----CHHHHHHhc
Confidence            7777765    345667788888877654     666666665

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=92.22  E-value=2.3  Score=40.25  Aligned_cols=35  Identities=11%  Similarity=0.056  Sum_probs=27.5

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      +-+.|+++.|.+           ..+|+++||+||..|+++||.+.
T Consensus        88 l~~~l~~~~~~~-----------~~~~~~SGs~A~e~al~~a~~~~  122 (401)
T PRK00854         88 LYEELAALTGSH-----------KVLPMNSGAEAVETAIKAVRKWG  122 (401)
T ss_pred             HHHHHHhhCCCC-----------EEEEeCCcHHHHHHHHHHHHHHH
Confidence            344566777754           38899999999999999999763

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=92.19  E-value=0.63  Score=45.06  Aligned_cols=85  Identities=16%  Similarity=0.165  Sum_probs=59.5

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|-...+|+    .++++.|..           ..+.|++|+.|+.+++.+.    ++               +.-.|+
T Consensus        59 ~nPtv~~lE~----~la~leg~~-----------~av~~~SG~aAi~~al~al----l~---------------~GD~VI  104 (432)
T PRK06702         59 GNPTLAAFEQ----KLAELEGGV-----------GAVATASGQAAIMLAVLNI----CS---------------SGDHLL  104 (432)
T ss_pred             CCcHHHHHHH----HHHHHhCCC-----------cEEEECCHHHHHHHHHHHh----cC---------------CCCEEE
Confidence            3688888887    456677664           3788999999999999764    11               111567


Q ss_pred             ecCCCcchHHHH----HHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         245 CSDQAHSSVERA----GLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       245 ~s~~aH~Si~Ka----a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      ++.....+-...    ...+|++++.|.    ..+|++.|+++|++.
T Consensus       105 ~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd----~~~d~~~l~~~I~~~  147 (432)
T PRK06702        105 CSSTVYGGTFNLFGVSLRKLGIDVTFFN----PNLTADEIVALANDK  147 (432)
T ss_pred             ECCCchHHHHHHHHHHHHHCCCEEEEEC----CCCCHHHHHHhCCcC
Confidence            777766544443    566788877773    358999999998753

>PRK07503 methionine gamma-lyase; Provisional

Probab=92.11  E-value=0.85  Score=43.61  Aligned_cols=83  Identities=18%  Similarity=0.133  Sum_probs=53.9

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|....+|+    .++++.|.+.           .+++++|+.++.+++.+.    +.              .+. .|+
T Consensus        63 ~~p~~~~le~----~lA~l~g~~~-----------~i~~~sG~~Al~~~l~~l----l~--------------~Gd-~Vi  108 (403)
T PRK07503         63 SNPTLALLEQ----RMASLEGGEA-----------AVALASGMGAITATLWTL----LR--------------PGD-EVI  108 (403)
T ss_pred             CCchHHHHHH----HHHHHhCCCc-----------EEEEcCHHHHHHHHHHHH----cC--------------CCC-EEE
Confidence            4566666665    6788888753           678888998877766532    11              012 355


Q ss_pred             ecCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...|..    ..+++..+|+.++.|+++     |+++|+++|++
T Consensus       109 v~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~  149 (403)
T PRK07503        109 VDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-----DPAALKAAISD  149 (403)
T ss_pred             EccCccchHHHHHHHHHhhCCEEEEEeCCC-----CHHHHHHhcCc
Confidence            66665543    334556678888888764     68888887754

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=92.08  E-value=2.5  Score=39.42  Aligned_cols=78  Identities=23%  Similarity=0.076  Sum_probs=52.9

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      ..+.+++.++.+++         .-++|+|+++++..++.+.     .              .++ .|++.+-+......
T Consensus        62 Lr~aia~~~~v~~~---------~I~it~G~~~~i~~~~~~l-----~--------------~g~-~vlv~~P~y~~~~~  112 (360)
T PRK07392         62 LRLALAQHHQLPPE---------WILPGNGAAELLTWAGREL-----A--------------QLR-AVYLITPAFGDYRR  112 (360)
T ss_pred             HHHHHHHHhCcChh---------hEEECCCHHHHHHHHHHHh-----C--------------CCC-eEEEECCCcHHHHH
Confidence            44455555677664         5889999998877655431     1              012 45566677778889


Q ss_pred             HHHhcCCceEEeeCCCCCC-----cCHHHHHH
Q psy1678         256 AGLLGGVTIRGLPADDSYK-----LRGDALEA  282 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~~~~-----md~~~L~~  282 (297)
                      ++..+|++++.||.++++.     .+++.+++
T Consensus       113 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~  144 (360)
T PRK07392        113 ALRAFGATVKELPLPLDQPSPGLTLRLQTLPP  144 (360)
T ss_pred             HHHHcCCeEEEEecccccCCcccccCHHHHHH
Confidence            9999999999999986543     45555544

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=92.02  E-value=2.5  Score=40.68  Aligned_cols=41  Identities=20%  Similarity=-0.022  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      ..+.++.+.|+++++-..         ..-.|+++|||||..|+++||..
T Consensus        86 ~~~~~la~~L~~~~~~~~---------~~v~f~~SGseA~e~AlklAr~~  126 (433)
T PRK08117         86 ESILKLAEELAEITPGGL---------DCFFFSNSGAEAIEGALKLAKHV  126 (433)
T ss_pred             HHHHHHHHHHHHhCCCCC---------CEEEEeCcHHHHHHHHHHHHHHh
Confidence            444556667777772111         13688999999999999999975

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=91.97  E-value=0.87  Score=43.29  Aligned_cols=82  Identities=16%  Similarity=0.010  Sum_probs=53.4

Q ss_pred             ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678         164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG  243 (297)
Q Consensus       164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i  243 (297)
                      ...|...++|+    .+++++|.+           ..++++||+.|+..++.+.    +.               +.-.|
T Consensus        50 ~~np~~~~lE~----~lA~l~g~~-----------~~l~~~sG~~Ai~~~l~~l----l~---------------~GD~V   95 (385)
T PRK08574         50 EENPTLRPLEE----ALAKLEGGV-----------DALAFNSGMAAISTLFFSL----LK---------------AGDRV   95 (385)
T ss_pred             CCCccHHHHHH----HHHHHhCCC-----------cEEEeCCHHHHHHHHHHHH----hC---------------CCCEE
Confidence            44577777776    567778864           3688899999998887653    11               11246


Q ss_pred             EecCCCcchHHHHHHh---cCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         244 YCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       244 ~~s~~aH~Si~Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      +++...|.+..+.+..   .|+.++.+.      .|+++|+++|+
T Consensus        96 lv~~~~y~~~~~~~~~~~~~g~~v~~~~------~d~~~l~~~i~  134 (385)
T PRK08574         96 VLPMEAYGTTLRLLKSLEKFGVKVVLAY------PSTEDIIEAIK  134 (385)
T ss_pred             EEcCCCchhHHHHHHHhhccCcEEEEEC------CCHHHHHHhcC
Confidence            6788888887766543   466555543      24666666664

>PRK09275 aspartate aminotransferase; Provisional

Probab=91.71  E-value=2.2  Score=42.39  Aligned_cols=117  Identities=10%  Similarity=0.019  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhccccccccccCchhhHHHHHHHH-HHHHHcCCC--ccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHH
Q psy1678         146 AIVADILSDSIACIGFTWIASPACTELEVVMLD-WLGKMLDLP--KEFLACSGGKGGGVIQGTASEATLVALLGAKAKTM  222 (297)
Q Consensus       146 svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~-~l~~llg~~--~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~  222 (297)
                      ..+-++.......   .|...+..-.+=+.+++ ++.+-++..  ..      ....-++|+||+++..+++.+-....+
T Consensus       116 ~~v~e~~~~~~~~---~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~------~~~~I~vT~Ga~~al~~~~~aL~~~~l  186 (527)
T PRK09275        116 EFVYELVDGIIGD---NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPK------GEFDLFAVEGGTAAMCYIFDSLKENGL  186 (527)
T ss_pred             HHHHHHHHHHhcC---CCCCCCCCHHHHHHHHHHHHHhhccCCCCCC------CcCeEEEeCCHHHHHHHHHHHHhhhhc
Confidence            3444555444332   35544454444444555 555443321  10      012588999999999888875322111


Q ss_pred             HHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCce--EEeeCC--CCCCcCHHHHHHHHH
Q psy1678         223 QRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTI--RGLPAD--DSYKLRGDALEAAIE  285 (297)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v--~~Vp~d--~~~~md~~~L~~~i~  285 (297)
                      -              .+.-.|++..-........+.+.|.++  +.++++  .++++|+++|++.+.
T Consensus       187 l--------------~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~  239 (527)
T PRK09275        187 L--------------KAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRD  239 (527)
T ss_pred             C--------------CCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcC
Confidence            1              011235556666667777888886644  455544  358999999988664

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=91.62  E-value=1.1  Score=41.81  Aligned_cols=79  Identities=11%  Similarity=0.031  Sum_probs=52.3

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++...+++.++.+++         .-++|+|+++++..++.+.     .              ..  .|++.+-......
T Consensus        58 ~lr~~ia~~~~~~~~---------~i~it~Ga~~~l~~~~~~~-----~--------------~~--~v~i~~P~y~~~~  107 (354)
T PRK06358         58 ELRKRIASFEQLDLE---------NVILGNGATELIFNIVKVT-----K--------------PK--KVLILAPTFAEYE  107 (354)
T ss_pred             HHHHHHHHHhCCChh---------hEEECCCHHHHHHHHHHHh-----C--------------CC--cEEEecCChHHHH
Confidence            344556666677654         5889999999987766542     1              01  2445555666677


Q ss_pred             HHHHhcCCceEEeeCCC--CCCcCHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADD--SYKLRGDALEAAI  284 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i  284 (297)
                      .++..+|.+++.+|+++  .+.+| +.+.+.+
T Consensus       108 ~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~  138 (354)
T PRK06358        108 RALKAFDAEIEYAELTEETNFAAN-EIVLEEI  138 (354)
T ss_pred             HHHHHcCCeeEEEeCccccCCCcc-HHHHHhh
Confidence            78888899999999874  35788 5554444

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=91.33  E-value=2.2  Score=41.88  Aligned_cols=95  Identities=15%  Similarity=0.034  Sum_probs=59.1

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe-
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC-  245 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~-  245 (297)
                      ....++|..+.+..+++||..+..+      ...+=++.|+.+|+.++.+--    .               +.-.|++ 
T Consensus        76 ~~~d~lE~~~~~~~~~~f~~~~~~~------~~nv~~~SG~~AN~av~~aL~----~---------------pgD~Il~~  130 (475)
T PLN03226         76 EYIDQIETLCQKRALEAFRLDPEKW------GVNVQPLSGSPANFAVYTALL----Q---------------PHDRIMGL  130 (475)
T ss_pred             hhHHHHHHHHHHHHHHHhCCCccee------EEecCcCchHHHHHHHHHHhC----C---------------CCCEEEEC
Confidence            3567899999999999999876421      001113778999988877641    1               1113444 


Q ss_pred             --cC---CCcchHHHHHHhcCCce--E--EeeCC-CCCCcCHHHHHHHHHH
Q psy1678         246 --SD---QAHSSVERAGLLGGVTI--R--GLPAD-DSYKLRGDALEAAIEE  286 (297)
Q Consensus       246 --s~---~aH~Si~Kaa~~lg~~v--~--~Vp~d-~~~~md~~~L~~~i~~  286 (297)
                        +.   .+|-|+..++++-+..+  .  ..++| ++|.+|+++|++.+.+
T Consensus       131 d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~  181 (475)
T PLN03226        131 DLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAML  181 (475)
T ss_pred             CCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhh
Confidence              22   44555555544433322  2  33445 5799999999999875

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=91.22  E-value=0.97  Score=42.83  Aligned_cols=75  Identities=15%  Similarity=0.066  Sum_probs=48.6

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++-+.+++++|.+           ..+++++|+.++..++.     .+.               +.-.|+++...|.+..
T Consensus        51 ~le~~la~l~g~~-----------~~l~~~sG~~al~~~l~-----ll~---------------~Gd~Vl~~~~~y~~~~   99 (378)
T TIGR01329        51 ALESLLAKLDKAD-----------RAFAFSSGMAALDVITR-----LLN---------------NGDEIIAGDDLYGGTD   99 (378)
T ss_pred             HHHHHHHHHhCCC-----------cEEEECCHHHHHHHHHH-----HhC---------------CCCEEEEcCCCchHHH
Confidence            3445788888884           36777788766543221     121               1114667778887765


Q ss_pred             H----HHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         255 R----AGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       255 K----aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      +    .+..+|++++.|+++     |+++|+++|+
T Consensus       100 ~~~~~~~~~~G~~v~~vd~~-----d~~~le~~i~  129 (378)
T TIGR01329       100 RLLTQVVPRSGVVVVHVDTT-----DLDKVKAALG  129 (378)
T ss_pred             HHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcC
Confidence            5    345578888888864     7888888875

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=91.19  E-value=2.6  Score=40.11  Aligned_cols=80  Identities=13%  Similarity=0.122  Sum_probs=53.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      ...++|+    .+++++|.++           .++.+.|+.+|+.++.+.    ..               +.-.|++++
T Consensus        44 ~~~~LE~----~lA~~~g~e~-----------al~~~sG~~a~~~~i~~l----~~---------------~GD~Vl~~~   89 (392)
T PLN03227         44 AHLELEQ----CMAEFLGTES-----------AILYSDGASTTSSTVAAF----AK---------------RGDLLVVDR   89 (392)
T ss_pred             HHHHHHH----HHHHHhCCCc-----------EEEecCcHHHHHHHHHHh----CC---------------CCCEEEEec
Confidence            3445555    6677888753           667777888888666552    11               122678899


Q ss_pred             CCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         248 QAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       248 ~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ..|.|+..++.+.+.+++.++.+     |.+.|++.++.
T Consensus        90 ~~h~s~~~~~~l~~~~~~~~~~~-----d~~~l~~~~~~  123 (392)
T PLN03227         90 GVNEALLVGVSLSRANVRWFRHN-----DMKDLRRVLEQ  123 (392)
T ss_pred             cccHHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHH
Confidence            99999999988888877776654     34555554443

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=91.19  E-value=1.5  Score=40.85  Aligned_cols=81  Identities=11%  Similarity=0.076  Sum_probs=52.6

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      ..+.+++.++.+++         .-++|+|++++...++.+.    ..              ... .|++.+-+......
T Consensus        70 lr~~ia~~~~~~~~---------~I~it~G~~~al~~~~~~~----~~--------------~gd-~V~v~~P~y~~~~~  121 (357)
T PRK14809         70 LTAALADRWDVSPE---------QVWLANGGDGALDYLARAM----LD--------------PGD-TVLVPDPGFAYYGM  121 (357)
T ss_pred             HHHHHHHHhCCCcc---------eEEECCCHHHHHHHHHHHh----cC--------------CCC-EEEEeCCChHHHHH
Confidence            44555666677653         5889999999887665542    11              012 34455555445566


Q ss_pred             HHHhcCCceEEeeCCC--CCCcCHHHHHHHH
Q psy1678         256 AGLLGGVTIRGLPADD--SYKLRGDALEAAI  284 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~--~~~md~~~L~~~i  284 (297)
                      ++...|.+++.||++.  ++.+|.+++.+.+
T Consensus       122 ~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~  152 (357)
T PRK14809        122 SARYHHGEVREYPVSKADDFEQTADTVLDAY  152 (357)
T ss_pred             HHHHcCCeEEEEecccCcCCCcCHHHHHHhh
Confidence            7778899999888863  4677887776654

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=91.18  E-value=0.86  Score=44.13  Aligned_cols=101  Identities=12%  Similarity=0.036  Sum_probs=64.0

Q ss_pred             cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678         161 FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN  240 (297)
Q Consensus       161 ~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~  240 (297)
                      ..|..+|....+|.    .+++++|++.           .++|..|+.+|..+..+.-.    +.   |.++.-  ...+
T Consensus        68 D~Y~gdpSv~~Lee----~vael~G~E~-----------alpthqGRgaE~Il~~~~~~----~~---g~e~g~--~~~~  123 (467)
T TIGR02617        68 EAYSGSRSYYALAE----SVKNIFGYQY-----------TIPTHQGRGAEQIYIPVLIK----KR---EQEKGL--DRSK  123 (467)
T ss_pred             cccccCchHHHHHH----HHHHHhCCce-----------EEECCCCchHHHHHHHhhcc----cc---cccccc--cccc
Confidence            35888999999987    5578999974           78998899999888765321    00   100000  0001


Q ss_pred             eEEEecCCCcchHHH-HHHhcCCceEEeeC----------CCCCCcCHHHHHHHHHHH
Q psy1678         241 LVGYCSDQAHSSVER-AGLLGGVTIRGLPA----------DDSYKLRGDALEAAIEED  287 (297)
Q Consensus       241 ~~i~~s~~aH~Si~K-aa~~lg~~v~~Vp~----------d~~~~md~~~L~~~i~~~  287 (297)
                      .  +++...||---+ .+.+.|..++.+++          +.+|.||++.|++.|++.
T Consensus       124 ~--~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~  179 (467)
T TIGR02617       124 M--VAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEV  179 (467)
T ss_pred             c--ccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhc
Confidence            1  233344544333 45567877766543          247999999999999864

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=91.18  E-value=4.2  Score=37.85  Aligned_cols=101  Identities=19%  Similarity=0.159  Sum_probs=65.8

Q ss_pred             CchhhHHHHHHHHHHHHHcCCC-ccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         166 SPACTELEVVMLDWLGKMLDLP-KEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~-~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ......+.+.+.+|+.+..|.+ -.       ...-++|+|++++...++.+.-   ..               +.-.|+
T Consensus        55 ~~G~~~lr~~ia~~~~~~~~~~~~~-------~~~I~it~G~~~~i~~~~~~l~---~~---------------~gd~Vl  109 (357)
T TIGR03539        55 TWGTPELREAIVDWLERRRGVPGLD-------PTAVLPVIGTKELVAWLPTLLG---LG---------------PGDTVV  109 (357)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCCCC-------cCeEEEccChHHHHHHHHHHHc---CC---------------CCCEEE
Confidence            3445678888999998887765 21       1257889999998766543310   00               112466


Q ss_pred             ecCCCcchHHHHHHhcCCceEEe------------------eCCCCC-CcCHHHHHHHHHHHHHCC
Q psy1678         245 CSDQAHSSVERAGLLGGVTIRGL------------------PADDSY-KLRGDALEAAIEEDLKKG  291 (297)
Q Consensus       245 ~s~~aH~Si~Kaa~~lg~~v~~V------------------p~d~~~-~md~~~L~~~i~~~~~~G  291 (297)
                      +.+-++++...++..+|.+++.|                  |.++.| .++.+.+++.++-+.+.|
T Consensus       110 ~~~p~y~~~~~~~~~~g~~~~~v~~~~~l~~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~  175 (357)
T TIGR03539       110 IPELAYPTYEVGALLAGATPVAADDPTELDPVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERG  175 (357)
T ss_pred             ECCCCcHHHHHHHHhcCCEEeccCChhhcCccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcC
Confidence            77888888888888887644333                  334555 467788888777777666

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=91.09  E-value=1.3  Score=41.67  Aligned_cols=81  Identities=15%  Similarity=0.058  Sum_probs=50.5

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      .|....+|+    .++++.|.+.           .++++||+.++..++ +.    +.              .+. .|++
T Consensus        51 ~pt~~~le~----~la~l~g~~~-----------~~~~~sG~~ai~~~~-~l----l~--------------~Gd-~Vl~   95 (366)
T PRK08247         51 NPTRGVLEQ----AIADLEGGDQ-----------GFACSSGMAAIQLVM-SL----FR--------------SGD-ELIV   95 (366)
T ss_pred             CchHHHHHH----HHHHHhCCCc-----------EEEEcCHHHHHHHHH-HH----hC--------------CCC-EEEE
Confidence            455566665    6788888863           588999998776543 21    11              012 3455


Q ss_pred             cCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +...+.+    +.+.+..+|++++.++.     .|+++|+++|++
T Consensus        96 ~~~~y~~t~~~~~~~~~~~G~~v~~vd~-----~d~~~l~~~i~~  135 (366)
T PRK08247         96 SSDLYGGTYRLFEEHWKKWNVRFVYVNT-----ASLKAIEQAITP  135 (366)
T ss_pred             ecCCcCcHHHHHHHHhhccCceEEEECC-----CCHHHHHHhccc
Confidence            5555544    34455667888877765     377888777754

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=91.07  E-value=0.84  Score=43.63  Aligned_cols=84  Identities=12%  Similarity=-0.001  Sum_probs=53.6

Q ss_pred             ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678         164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG  243 (297)
Q Consensus       164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i  243 (297)
                      ...|....+|+    .+++++|.+.           .+++++|+.++..++.+.    +.               +.-.|
T Consensus        61 ~~~p~~~~le~----~lA~l~g~~~-----------~i~~ssG~~Ai~~~l~al----l~---------------~GD~V  106 (398)
T PRK08249         61 NTNPTVQAFEE----KVRILEGAEA-----------ATAFSTGMAAISNTLYTF----LK---------------PGDRV  106 (398)
T ss_pred             CCChHHHHHHH----HHHHHhCCCe-----------EEEeCChHHHHHHHHHHh----cC---------------CCCEE
Confidence            44566667776    6788888643           677888888888777653    11               11146


Q ss_pred             EecCCCcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         244 YCSDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       244 ~~s~~aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +++...|.+..    ..+..+|++++.++.     .|++.|+++|++
T Consensus       107 i~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~-----~d~e~l~~~i~~  148 (398)
T PRK08249        107 VSIKDTYGGTNKIFTEFLPRMGVDVTLCET-----GDHEQIEAEIAK  148 (398)
T ss_pred             EEcCCchHHHHHHHHHHHhhCCeEEEEcCC-----CCHHHHHHhcCC
Confidence            67778887643    334556776665543     577777777753

>PRK08354 putative aminotransferase; Provisional

Probab=90.97  E-value=1.5  Score=40.07  Aligned_cols=72  Identities=18%  Similarity=0.105  Sum_probs=49.3

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +.+++++.+|-            ..++|+|+++++...+.+.    .                +.-.|++.+-+++...+
T Consensus        45 l~~~ia~~~~~------------~I~vt~G~~~al~~~~~~~----~----------------~gd~vlv~~P~y~~~~~   92 (311)
T PRK08354         45 LEEEFSKLFGE------------PIVITAGITEALYLIGILA----L----------------RDRKVIIPRHTYGEYER   92 (311)
T ss_pred             HHHHHHHHHCC------------CEEECCCHHHHHHHHHHhh----C----------------CCCeEEEeCCCcHHHHH
Confidence            45678888772            3889999999976544221    1                01146677889999999


Q ss_pred             HHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         256 AGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      +++.+|.+++.++      +|++.|++.++
T Consensus        93 ~~~~~g~~~~~~~------~d~~~l~~~~~  116 (311)
T PRK08354         93 VARFFAARIIKGP------NDPEKLEELVE  116 (311)
T ss_pred             HHHHcCCEEeecC------CCHHHHHHhhc
Confidence            9999998876653      45666665543

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=90.92  E-value=2.2  Score=40.76  Aligned_cols=82  Identities=13%  Similarity=0.074  Sum_probs=50.6

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      .|-...+|+    .+++++|.+.           ..++++|+.++..++.+.    +.              ... .|++
T Consensus        64 ~p~~~~Le~----~lA~l~G~~~-----------~~~~~sG~~Ai~~~l~~~----l~--------------~Gd-~Vl~  109 (398)
T PRK07504         64 NPTVDMFEK----RMCALEGAED-----------ARATASGMAAVTAAILCQ----VK--------------AGD-HVVA  109 (398)
T ss_pred             CchHHHHHH----HHHHHhCCCe-----------eeEecCHHHHHHHHHHHH----hC--------------CCC-EEEE
Confidence            466666665    6778889864           456788898887666542    11              011 4556


Q ss_pred             cCCCcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +...+.+..    ..+..+|+.++.++     .+|++.|+++|++
T Consensus       110 ~~~~y~~~~~~~~~~~~~~G~~v~~vd-----~~d~e~l~~ai~~  149 (398)
T PRK07504        110 ARALFGSCRYVVETLLPRYGIESTLVD-----GLDLDNWEKAVRP  149 (398)
T ss_pred             cCCchhHHHHHHHHHHhhcCeEEEEEC-----CCCHHHHHHhcCc
Confidence            666665433    33445677777664     3678888777753

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=90.76  E-value=1.2  Score=42.70  Aligned_cols=85  Identities=13%  Similarity=0.008  Sum_probs=55.0

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      ....|....+|+    .++++.|.+           ..+++++|+.++..++.+.    +.               +.-.
T Consensus        66 r~~~p~~~~le~----~lA~l~g~~-----------~al~~~sG~~Ai~~~l~al----l~---------------~Gd~  111 (403)
T PRK07810         66 RYGNPTVSMFEE----RLRLIEGAE-----------ACFATASGMSAVFTALGAL----LG---------------AGDR  111 (403)
T ss_pred             CCCCchHHHHHH----HHHHHhCCC-----------cEEEECChHHHHHHHHHHH----hC---------------CCCE
Confidence            345566667776    567888865           3788999999998876553    11               1114


Q ss_pred             EEecCCCcc----hHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHS----SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~----Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      |+++...|.    ...+.+...|++++.|+.+     |+++|+++|++
T Consensus       112 Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~ai~~  154 (403)
T PRK07810        112 LVAARSLFGSCFVVCNEILPRWGVETVFVDGE-----DLSQWEEALSV  154 (403)
T ss_pred             EEEccCCcchHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCc
Confidence            556665552    2345566678888777643     77888877754

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=90.42  E-value=3.6  Score=38.99  Aligned_cols=37  Identities=16%  Similarity=-0.013  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         173 EVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       173 E~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      ..++.+.|+++.+.+           .-.|+++||+||..|+++||.+
T Consensus        84 ~~~l~~~l~~~~~~~-----------~~~~~~SGseA~e~Alk~a~~~  120 (396)
T PRK04073         84 LGPWYEKVAKLTGKD-----------MVLPMNTGAEAVETAIKAARRW  120 (396)
T ss_pred             HHHHHHHHHhcCCCC-----------eEEEcCChHHHHHHHHHHHHHH
Confidence            334455666776643           3788999999999999999976

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=90.40  E-value=1.4  Score=41.68  Aligned_cols=89  Identities=16%  Similarity=-0.006  Sum_probs=58.0

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcC-ChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQG-TASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~ts-GGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ++.+..+-.++.+-+++++|.++.        ..-+|++ +||+++-.++..-    +.              .++..++
T Consensus        43 ~~~f~~~~~~~r~~l~~l~~~~~~--------~~v~~~~gs~T~~~~~~~~~l----~~--------------~~~~~vi   96 (378)
T PRK03080         43 QKPVKALLKRVIEGTRELLSLPEG--------YEVGIVPGSDTGAWEMALWSL----LG--------------ARRVDHL   96 (378)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCC--------ceEEEECCchHHHHHHHHHhc----CC--------------CCcceEE
Confidence            355667777899999999999753        1366665 7888876666432    11              0122233


Q ss_pred             ecCCCcchHHH--HHHhcCC-ceEEeeCCCCCCcCHHHHH
Q psy1678         245 CSDQAHSSVER--AGLLGGV-TIRGLPADDSYKLRGDALE  281 (297)
Q Consensus       245 ~s~~aH~Si~K--aa~~lg~-~v~~Vp~d~~~~md~~~L~  281 (297)
                      + ...|.+-..  +++.+|+ +++.++++..+..|+++++
T Consensus        97 ~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~g~~~d~~~i~  135 (378)
T PRK03080         97 A-WESFGSKWATDVVKQLKLEDPRVLEADYGSLPDLSAVD  135 (378)
T ss_pred             E-eCHHHHHHHHHHHhhcCCCCceEeccCCCCCCCHhhcC
Confidence            3 346666444  3456799 9999999877788877644

>PRK12403 putative aminotransferase; Provisional

Probab=89.98  E-value=3.9  Score=39.89  Aligned_cols=43  Identities=14%  Similarity=0.047  Sum_probs=31.7

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      +....++.+.|+++++..-+         .-.|+++|||||-.|+++||.+.
T Consensus        97 ~~~~~~lae~L~~~~p~~~~---------~v~f~~SGseA~e~AiklAr~~~  139 (460)
T PRK12403         97 HPAVIELSELLFSLLPGHYS---------HAIYTNSGSEANEVLIRTVRRYW  139 (460)
T ss_pred             CHHHHHHHHHHHHhCCCCcC---------EEEEeCCcHHHHHHHHHHHHHHH
Confidence            34455566777788763211         37899999999999999999864

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=89.76  E-value=3  Score=39.35  Aligned_cols=37  Identities=16%  Similarity=0.083  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      ..+-+.+++++|++.           -+|+++||+||..|+..+|.+.
T Consensus        76 ~~~~~~l~~~~~~~~-----------~~~~~SGs~A~e~al~~~~~~~  112 (400)
T PTZ00125         76 GLAEKYITDLFGYDK-----------VLPMNSGAEAGETALKFARKWG  112 (400)
T ss_pred             HHHHHHHHhCCCCCE-----------EEEeCCcHHHHHHHHHHHHHHH
Confidence            344455566666643           6789999999999999998753

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=89.72  E-value=2  Score=40.01  Aligned_cols=79  Identities=16%  Similarity=0.183  Sum_probs=49.6

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      .+.+++++.+|.+++         .-++|+|++++...++.+.     .              ..+. ++. .-+.....
T Consensus        59 ~lr~~ia~~~~~~~~---------~i~it~Ga~~~l~~~~~~l-----~--------------~g~v-iv~-~P~y~~~~  108 (356)
T PRK08056         59 HLHQALARHHQVPAS---------WILAGNGETESIFAVVSGL-----K--------------PRRA-MIV-TPGFAEYR  108 (356)
T ss_pred             HHHHHHHHHhCcChh---------hEEECCCHHHHHHHHHHHh-----C--------------CCCE-EEe-CCCcHHHH
Confidence            466788888888764         5788999999877665432     1              0122 332 23344556


Q ss_pred             HHHHhcCCceEEeeCCCC--CCcCHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDS--YKLRGDALEAAI  284 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~--~~md~~~L~~~i  284 (297)
                      ..++..|.+++.||.+++  +.+| +++.+.+
T Consensus       109 ~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~  139 (356)
T PRK08056        109 RALQQVGCEIRRYSLREADGWQLT-DAILEAL  139 (356)
T ss_pred             HHHHHcCCeEEEEecccccCCCcc-HHHHHhc
Confidence            678888999999998743  3454 2343433

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=89.43  E-value=9.6  Score=37.00  Aligned_cols=43  Identities=19%  Similarity=0.064  Sum_probs=31.3

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      +....++.+.|++++..+.         ..-.|+++|||||-.|++.||.+.
T Consensus       116 ~~~~~~lAe~L~~~~p~~~---------~~v~f~~SGsEA~e~AlklAr~~t  158 (442)
T TIGR03372       116 DPLRALLAKTLAALTPGKL---------KYSFFCNSGTESVEAALKLAKAYQ  158 (442)
T ss_pred             CHHHHHHHHHHHHhCCCCc---------CEEEEeCCchHHHHHHHHHHHHHH
Confidence            3344556677777764321         137899999999999999999874

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>KOG0258|consensus

Probab=89.41  E-value=13  Score=35.41  Aligned_cols=109  Identities=17%  Similarity=0.055  Sum_probs=74.2

Q ss_pred             cccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCC
Q psy1678         159 IGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDII  238 (297)
Q Consensus       159 n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~  238 (297)
                      ..+.|..|.+...+-+.|-+.+-+.=|.|.+.       .+..+|+|+|.++.+-|..--.         +         
T Consensus       105 s~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p-------~dI~LT~GAS~ai~~il~l~~~---------~---------  159 (475)
T KOG0258|consen  105 SLGAYSDSQGVPGVRKHVAEFIERRDGIPADP-------EDIFLTTGASPAIRSILSLLIA---------G---------  159 (475)
T ss_pred             cccccccccCChhHHHHHHHHHHhccCCCCCH-------HHeeecCCCcHHHHHHHHHHhc---------C---------
Confidence            55678888888888888888888888976432       3689999999988776655311         1         


Q ss_pred             CceEEEecCCCcchHHH-HHHhcCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCCCcc
Q psy1678         239 ANLVGYCSDQAHSSVER-AGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKGKIP  294 (297)
Q Consensus       239 ~~~~i~~s~~aH~Si~K-aa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G~~P  294 (297)
                      ++.-|+++ ...|-..- ...++|...+.-..|+  +|.+|++.|++.+++.+ +|..|
T Consensus       160 ~~~GvliP-iPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~-k~i~~  216 (475)
T KOG0258|consen  160 KKTGVLIP-IPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEAR-KGINP  216 (475)
T ss_pred             CCCceEee-cCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHh-ccCCc
Confidence            01111222 23333333 3356777666656664  89999999999999988 77655

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=88.72  E-value=5  Score=37.63  Aligned_cols=46  Identities=15%  Similarity=0.041  Sum_probs=31.6

Q ss_pred             eEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcC
Q psy1678         200 GVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGG  261 (297)
Q Consensus       200 G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg  261 (297)
                      .+|+++|||||..|+..||...       +         ++.+|.....-|-|..-++.+.|
T Consensus        87 ~~~~~SGseA~~~Al~~ar~~~-------~---------~~~vv~~~~~yHg~~~~~~~~~~  132 (375)
T PRK04260         87 AFFCNSGAEANEAAIKIARKAT-------G---------KQEIITFQNSFHGRTFGSMSATG  132 (375)
T ss_pred             EEEcCccHHHHHHHHHHHHHhc-------C---------CCeEEEECCCcCcccHHHHhccC
Confidence            6899999999999999998641       1         12244445666766666655433

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=88.45  E-value=8.4  Score=36.70  Aligned_cols=37  Identities=16%  Similarity=-0.044  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      .++.+.|+++.+.+           .-.|+++|||||..|+++||.+.
T Consensus        84 ~~la~~l~~~~~~~-----------~v~~~~sGseA~e~Alk~ar~~~  120 (406)
T PRK12381         84 LRLAKKLIDATFAD-----------RVFFCNSGAEANEAALKLARKYA  120 (406)
T ss_pred             HHHHHHHHhhCCCC-----------eEEEcCCcHHHHHHHHHHHHHHH
Confidence            34555666666543           37899999999999999999763

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=88.25  E-value=1.2  Score=42.16  Aligned_cols=91  Identities=18%  Similarity=0.032  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh-HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678         172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS-EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH  250 (297)
Q Consensus       172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT-~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH  250 (297)
                      +=..++..+.+++|++..        ...+.++..| |+..++|++.| . .+              ..+. |+.|...|
T Consensus        57 ltn~l~~d~~~~~G~~~~--------~~~~~vP~atgm~l~l~l~~l~-~-r~--------------~a~~-Viw~ridq  111 (389)
T PF05889_consen   57 LTNSLVLDALRLAGLRSV--------KSCFVVPMATGMSLTLCLLALR-M-RP--------------KAKY-VIWPRIDQ  111 (389)
T ss_dssp             HHHHHHHHHHHHTTHTTH--------CEEEEESS-HHHHHHHHHHHHH-H-HC--------------T--E-EEEEEEET
T ss_pred             HHHHHHHHHHHHcCCccc--------cceEEEecccccHHHHHHHHHh-c-cc--------------CCce-EEEeeccc
Confidence            333455556677899853        1245555555 44555666655 2 11              1243 55688999


Q ss_pred             chHHHHHHhcCCceEEeeCC---CCCCcCHHHHHHHHHHH
Q psy1678         251 SSVERAGLLGGVTIRGLPAD---DSYKLRGDALEAAIEED  287 (297)
Q Consensus       251 ~Si~Kaa~~lg~~v~~Vp~d---~~~~md~~~L~~~i~~~  287 (297)
                      +|..||+...|++++.||..   +.-..|.+.+++.|++.
T Consensus       112 kSc~kai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~  151 (389)
T PF05889_consen  112 KSCFKAIERAGLEPVVVENVLEGDELITDLEAIEAKIEEL  151 (389)
T ss_dssp             HHHHHHHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHH
T ss_pred             cchHHHHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHh
Confidence            99999999999999999963   34577888888888543

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PRK05939 hypothetical protein; Provisional

Probab=88.18  E-value=2.8  Score=40.07  Aligned_cols=83  Identities=20%  Similarity=0.087  Sum_probs=52.7

Q ss_pred             ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678         164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG  243 (297)
Q Consensus       164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i  243 (297)
                      ...|....+|+    -++++.|...           .+.+++|+.|+..++.+.    +.              ... .|
T Consensus        44 ~g~p~~~~lE~----~la~leg~~~-----------~v~~ssG~~Ai~~~l~al----l~--------------~Gd-~V   89 (397)
T PRK05939         44 QGTPTTAALEA----KITKMEGGVG-----------TVCFATGMAAIAAVFLTL----LR--------------AGD-HL   89 (397)
T ss_pred             CCCHHHHHHHH----HHHHHhCCCe-----------EEEeCCHHHHHHHHHHHH----cC--------------CCC-EE
Confidence            34677788887    4567777653           566667788877766543    11              012 35


Q ss_pred             EecCCCc---chHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         244 YCSDQAH---SSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       244 ~~s~~aH---~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      +++...|   .++.+++...|+.++.++++     |+++|+++|+
T Consensus        90 v~~~~~y~~t~~~~~~l~~~G~~v~~v~~~-----d~e~l~~~l~  129 (397)
T PRK05939         90 VSSQFLFGNTNSLFGTLRGLGVEVTMVDAT-----DVQNVAAAIR  129 (397)
T ss_pred             EECCCccccHHHHHHHHHhcCCEEEEECCC-----CHHHHHHhCC
Confidence            5566654   45556666778888888763     6777777764

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=87.81  E-value=3.4  Score=39.78  Aligned_cols=43  Identities=30%  Similarity=0.204  Sum_probs=36.2

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      .+++|-++-..++++++.-+          ---|++.||||++.|+.+||-..
T Consensus        91 Pte~Ei~~Aell~~~~p~~e----------~vrfvnSGTEAtmsAiRlARa~T  133 (432)
T COG0001          91 PTELEVELAELLIERVPSIE----------KVRFVNSGTEATMSAIRLARAYT  133 (432)
T ss_pred             CCHHHHHHHHHHHHhcCccc----------EEEEecchhHHHHHHHHHHHHhh
Confidence            46788888899999997743          27789999999999999999863

>PRK06767 methionine gamma-lyase; Provisional

Probab=87.56  E-value=5.5  Score=37.79  Aligned_cols=82  Identities=15%  Similarity=0.032  Sum_probs=46.6

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|....+|+    .++++.|.+           ..+++++|+.++..++.+.    ..               +.-.|+
T Consensus        59 ~~pt~~~Le~----~lA~l~G~~-----------~al~~~sG~~Ai~~~l~al----~~---------------~Gd~Vv  104 (386)
T PRK06767         59 GNPTVKLFEE----RMAVLEGGE-----------EALAFGSGMAAISATLIGF----LK---------------AGDHII  104 (386)
T ss_pred             CCcchHHHHH----HHHHHhCCC-----------cEEEECCHHHHHHHHHHHH----hC---------------CCCEEE
Confidence            4566666665    677888864           3788888888776665442    11               111456


Q ss_pred             ecCCCcchHHHHHH----hcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         245 CSDQAHSSVERAGL----LGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       245 ~s~~aH~Si~Kaa~----~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      ++...|.+......    ..|+.+..++.     .|+++|+++|+
T Consensus       105 ~~~~~y~~~~~~~~~~~~~~gi~~~~~~~-----~d~~~l~~~i~  144 (386)
T PRK06767        105 CSNGLYGCTYGFLEVLEEKFMITHSFCDM-----ETEADIENKIR  144 (386)
T ss_pred             EcCCcHHHHHHHHHHHHhhcCeEEEEeCC-----CCHHHHHHhhC
Confidence            66666655444433    23444444432     25666666654

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=87.52  E-value=2.3  Score=40.71  Aligned_cols=99  Identities=15%  Similarity=0.105  Sum_probs=58.7

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE-
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY-  244 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~-  244 (297)
                      ....-+||..+++.+.+|||..+..++      .-+=.-+||.||+.++.+-    ++.              ...++- 
T Consensus        61 ~~~id~iE~la~~ra~~lF~~~~~~w~------anvqp~SGs~An~av~~aL----l~p--------------GD~Im~l  116 (399)
T PF00464_consen   61 CEYIDEIEELAIERAKELFGAEPKEWY------ANVQPHSGSQANLAVYMAL----LKP--------------GDTIMGL  116 (399)
T ss_dssp             THHHHHHHHHHHHHHHHHHT-STTTEE------EE---SSHHHHHHHHHHHH----T-T--------------T-EEEEE
T ss_pred             cchhhHHHHHHHHHHHHHhCCCcccce------EEeecCCchHHHHHHHHHH----Hhh--------------cCcEEec
Confidence            345678999999999999999854211      1223367899997776653    110              112222 


Q ss_pred             -ecCCCcchHHHHHHh-------cCCceEEeeCC-CCCCcCHHHHHHHHHHHH
Q psy1678         245 -CSDQAHSSVERAGLL-------GGVTIRGLPAD-DSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       245 -~s~~aH~Si~Kaa~~-------lg~~v~~Vp~d-~~~~md~~~L~~~i~~~~  288 (297)
                       .+.-.|.|--..+..       ..++++..++| +++.+|.++|++.+++-+
T Consensus       117 ~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~k  169 (399)
T PF00464_consen  117 SLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHK  169 (399)
T ss_dssp             EGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH-
T ss_pred             ChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcC
Confidence             234467665443333       23478888999 789999999999998754

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=87.25  E-value=10  Score=36.36  Aligned_cols=131  Identities=16%  Similarity=0.085  Sum_probs=71.5

Q ss_pred             CCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHH-HHH------HHhccccccccccCch--hhHHHHHHH
Q psy1678         107 TPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVA-DIL------SDSIACIGFTWIASPA--CTELEVVML  177 (297)
Q Consensus       107 ~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~-d~l------~~~lN~n~~~~~~~p~--~~~iE~~v~  177 (297)
                      .+.+..+++.++++...++..   .+.|.|.=+-+.-.++++- .++      ++.. +  .-.+.|.+  -..+|-+  
T Consensus        55 ~~~sE~e~l~~l~~ia~kN~~---~~sfiG~GyY~~~~P~vI~rnile~pewyTaYT-P--YQpEISQGrLqaLfefQ--  126 (450)
T COG0403          55 KPLSEYEALAELKEIASKNKV---FTSFIGAGYYDTYTPPVILRNILENPEWYTAYT-P--YQPEISQGRLEALFEFQ--  126 (450)
T ss_pred             CCCCHHHHHHHHHHHHhcCch---hhhhccCcccCCcCcHHHHHHhhcCccccccCC-C--CchhhhhHHHHHHHHHH--
Confidence            446899999999998776652   2335443333333344443 222      2111 0  01122322  2334444  


Q ss_pred             HHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHH
Q psy1678         178 DWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAG  257 (297)
Q Consensus       178 ~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa  257 (297)
                      .++++|.|++-.         ..-+.-|||-+ -.|+..|+....               .++-.+++++..|+.-....
T Consensus       127 tlv~dLTGm~VA---------NASm~DeaTAa-AEAm~ma~r~~k---------------~k~~~~~V~~~vhpqt~~Vl  181 (450)
T COG0403         127 TLVADLTGLDVA---------NASMLDEATAA-AEAMLMAKRVTK---------------KKRNKFLVPKDVHPQTLDVL  181 (450)
T ss_pred             HHHHHHhCCCcc---------cchhhhhHHHH-HHHHHHHHHhhc---------------CcCceEEecCCCCHHHHHHH
Confidence            378999999852         34455566633 334444433211               12346888999999877665


Q ss_pred             H----hcCCceEEeeCC
Q psy1678         258 L----LGGVTIRGLPAD  270 (297)
Q Consensus       258 ~----~lg~~v~~Vp~d  270 (297)
                      +    -+|+.|+.++.+
T Consensus       182 ~Tra~~~g~~i~~~~~~  198 (450)
T COG0403         182 RTRAEGLGIEIEVVDAD  198 (450)
T ss_pred             HhhcccCceEEEEeccc
Confidence            4    356777777665

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=87.19  E-value=5.2  Score=38.75  Aligned_cols=83  Identities=16%  Similarity=0.045  Sum_probs=51.4

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|....+|+    .++++.|.+.           .+++++|+.|+..++.+.    +.               +.-.|+
T Consensus        67 ~~p~~~~Le~----~lA~l~g~~~-----------av~~sSG~aAi~~al~al----l~---------------~Gd~Vv  112 (436)
T PRK07812         67 MNPTQDVVEQ----RIAALEGGVA-----------ALLLASGQAAETFAILNL----AG---------------AGDHIV  112 (436)
T ss_pred             CCchHHHHHH----HHHHHhCCCe-----------EEEEccHHHHHHHHHHHH----hC---------------CCCEEE
Confidence            3566666765    6678888753           788999999988887543    11               111455


Q ss_pred             ecCCCcchHHHH----HHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         245 CSDQAHSSVERA----GLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       245 ~s~~aH~Si~Ka----a~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      ++...|.+....    +.-.|+.++.++ |.   -|+++|+++|+
T Consensus       113 ~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d~---~d~e~l~~ai~  153 (436)
T PRK07812        113 SSPRLYGGTYNLFHYTLPKLGIEVSFVE-DP---DDLDAWRAAVR  153 (436)
T ss_pred             EeCCcchHHHHHHHHHhhcCeEEEEEEC-CC---CCHHHHHHhCC
Confidence            666666665443    333566666654 22   27777777665

>PLN02624 ornithine-delta-aminotransferase

Probab=86.85  E-value=10  Score=37.17  Aligned_cols=39  Identities=15%  Similarity=0.021  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      ...++.+.|++++|++           .-.|+++|||||-.|++.||.+.
T Consensus       118 ~~~~la~~L~~~~~~~-----------~~~f~~SGseA~e~AlklAr~~~  156 (474)
T PLN02624        118 KFPEFAEYLTSMFGYD-----------MVLPMNTGAEGVETAIKLARKWG  156 (474)
T ss_pred             HHHHHHHHHHhhcCCC-----------eEEEeCChHHHHHHHHHHHHHHH
Confidence            3334555666667764           37889999999999999999863

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=86.64  E-value=12  Score=36.44  Aligned_cols=43  Identities=19%  Similarity=0.062  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      +....++.+.|++++....         ..-.|+++|||||-.|++.||.+.
T Consensus       123 ~~~~~~lae~L~~~~p~~~---------~~v~f~~SGsEAve~AlklAr~~t  165 (459)
T PRK11522        123 DPLRAMLAKTLAALTPGKL---------KYSFFCNSGTESVEAALKLAKAYQ  165 (459)
T ss_pred             CHHHHHHHHHHHHhCCCCC---------CEEEEeCCchHHHHHHHHHHHHHh
Confidence            3344455666777763221         137899999999999999999864

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=86.55  E-value=7.5  Score=36.72  Aligned_cols=34  Identities=26%  Similarity=0.178  Sum_probs=26.5

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      ..+.++++.|++           ..+|+++|||||-.|+++||.+
T Consensus        71 la~~l~~~~~~~-----------~v~~~~SGseA~e~Alklar~~  104 (364)
T PRK04013         71 MLEELSKWVNYE-----------YVYMGNSGTEAVEAALKFARLY  104 (364)
T ss_pred             HHHHHHhhcCCC-----------EEEEeCchHHHHHHHHHHHHHH
Confidence            334455666664           3789999999999999999976

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=86.40  E-value=2.4  Score=40.25  Aligned_cols=95  Identities=19%  Similarity=0.228  Sum_probs=60.6

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC---cc
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA---HS  251 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a---H~  251 (297)
                      ++.+.+++|+|.+..          -++..|-|--|++--..++.....-.+.. ..|.+   ..+...+|+.-.   |+
T Consensus        73 e~r~l~a~llgv~~~----------~viv~gNSSL~lM~d~i~~a~~~G~~~~~-~PW~~---~~~vKfLCPvPGYDRHF  138 (425)
T PF12897_consen   73 EARELFAELLGVPPE----------NVIVGGNSSLNLMHDTISRAMLHGVPGSE-TPWCK---EEKVKFLCPVPGYDRHF  138 (425)
T ss_dssp             HHHHHHHHHHTS-GG----------GEEE-SS-HHHHHHHHHHHHHHH--TT-S-S-GGG---SS--EEEEEES--HHHH
T ss_pred             HHHHHHHHHhCCCHH----------HEEEeccchHHHHHHHHHHHHhcCCCCCC-CCchh---ccCceEEecCCCchHHH
Confidence            466789999999974          67778888888888888887755432110 11222   246778887544   55


Q ss_pred             hHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         252 SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       252 Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      +|   ++.+|+..+.||.+++| -|.+.+++.+.+|
T Consensus       139 ai---~E~~Giemi~VpM~~dG-PDmD~Ve~LV~~D  170 (425)
T PF12897_consen  139 AI---TEHFGIEMIPVPMTEDG-PDMDMVEELVAED  170 (425)
T ss_dssp             HH---HHHCT-EEEEEEEETTE-E-HHHHHHHTHTS
T ss_pred             HH---HHhhCcEEEecCCCCCC-CCHHHHHHHHhcC
Confidence            54   66799999999999885 6999999988654

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=86.15  E-value=4.2  Score=38.93  Aligned_cols=82  Identities=18%  Similarity=0.158  Sum_probs=48.2

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|....+|    +.++++.|.+           .++++++|++++.+++.+.    +.              ... .|+
T Consensus        58 ~~p~~~~Le----~~lA~l~g~~-----------~~v~~~sG~~Ai~~~l~al----l~--------------pGD-~Vv  103 (405)
T PRK08776         58 GNPTRDLLG----EALAELEGGA-----------GGVITATGMGAINLVLNAL----LQ--------------PGD-TLV  103 (405)
T ss_pred             CChHHHHHH----HHHHHHhCCC-----------ceEEEcCHHHHHHHHHHHH----hC--------------CCC-EEE
Confidence            344545555    5677888863           3788888998886665543    11              012 344


Q ss_pred             ecCCCcch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         245 CSDQAHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       245 ~s~~aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      ++...+..    +...+...|+.++.++.     .|++.|+++|+
T Consensus       104 v~~p~Y~~t~~~~~~~~~~~g~~v~~v~~-----~d~~~l~~~i~  143 (405)
T PRK08776        104 VPHDAYGGSWRLFNALAKKGHFALITADL-----TDPRSLADALA  143 (405)
T ss_pred             EccCCchHHHHHHHHHHHhcCcEEEEECC-----CCHHHHHHhcC
Confidence            55556554    33444445666666654     36777777664

>PRK07046 aminotransferase; Validated

Probab=85.24  E-value=1.7  Score=42.38  Aligned_cols=41  Identities=24%  Similarity=0.134  Sum_probs=34.3

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      .+..|.++.+.|+++++++           .-.|+++|||||..|+++||.+
T Consensus       113 ~~~~~~~lAe~l~~~~~~~-----------~v~F~nSGtEA~e~AlrlAR~~  153 (453)
T PRK07046        113 PSEDAAWVGEELARRFGLP-----------YWQVATTATDANRFVLRWARAV  153 (453)
T ss_pred             CCHHHHHHHHHHHHHhCCC-----------EEEEECCHHHHHHHHHHHHHHh
Confidence            3567777888899988643           3689999999999999999986

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=85.22  E-value=4.5  Score=38.42  Aligned_cols=83  Identities=22%  Similarity=0.086  Sum_probs=50.2

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|....+|+    .++++.|.+.           ++++++|++++..++.+.    +.               +.-.|+
T Consensus        59 ~~p~~~~Le~----~lA~~~g~~~-----------~i~~~sG~~Ai~~~l~al----l~---------------~Gd~Vl  104 (388)
T PRK07811         59 GNPTRTALEE----QLAALEGGAY-----------GRAFSSGMAATDCLLRAV----LR---------------PGDHIV  104 (388)
T ss_pred             CCccHHHHHH----HHHHHhCCCc-----------eEEeCCHHHHHHHHHHHH----hC---------------CCCEEE
Confidence            3466666666    5677777753           566778898888877654    11               111466


Q ss_pred             ecCCCcchHHHHH-Hh---cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSVERAG-LL---GGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si~Kaa-~~---lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...|.+..... .+   .|+.++.++.     .|+++|+++|.+
T Consensus       105 ~~~~~y~~t~~~~~~~~~~~gi~~~~~d~-----~d~e~l~~~i~~  145 (388)
T PRK07811        105 IPNDAYGGTFRLIDKVFTRWGVEYTPVDL-----SDLDAVRAAITP  145 (388)
T ss_pred             EcCCCchHHHHHHHHhCcCCCeEEEEeCC-----CCHHHHHHhcCc
Confidence            6777776543332 22   3555555543     377877777754

>KOG0257|consensus

Probab=85.07  E-value=22  Score=34.00  Aligned_cols=118  Identities=15%  Similarity=0.114  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHH
Q psy1678         145 PAIVADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQ  223 (297)
Q Consensus       145 ~svl~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~  223 (297)
                      +..+.+.+..+..-. ..-+...-+..++-+.+.+.+++++|-.-.      ....-.+|.|+.++.+.++++--+    
T Consensus        46 P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~------~~~eVlVT~GA~~ai~~~~~~l~~----  115 (420)
T KOG0257|consen   46 PKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLD------PDDEVLVTAGANEAISSALLGLLN----  115 (420)
T ss_pred             cHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccC------CcccEEEecCchHHHHHHHHHHcC----
Confidence            345555555444332 112223334456666777778886654211      113589999999999998887422    


Q ss_pred             HHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC--------CCCCcCHHHHHHHHHHH
Q psy1678         224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--------DSYKLRGDALEAAIEED  287 (297)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--------~~~~md~~~L~~~i~~~  287 (297)
                                     +.-.|++-+-.-.|-.-...+.|-..+.||..        .++.+|.+.|+.+|.+.
T Consensus       116 ---------------~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~k  172 (420)
T KOG0257|consen  116 ---------------PGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEK  172 (420)
T ss_pred             ---------------CCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhccCC
Confidence                           11134445667777778888888877777765        57899999999988653

>KOG0256|consensus

Probab=84.27  E-value=7.3  Score=37.24  Aligned_cols=102  Identities=15%  Similarity=0.155  Sum_probs=63.3

Q ss_pred             hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      +...+-+.+.+.+.+.-|.+..+     ....-++|.|+|-+|-+-+-+--+        .|.           ..+++.
T Consensus       122 Gl~~frqa~A~Fm~~~r~~~v~f-----dP~~~Vv~~G~T~ane~l~fcLad--------pgd-----------afLvPt  177 (471)
T KOG0256|consen  122 GLPSFRQAVAEFMERARGNRVKF-----DPERVVVTNGATSANETLMFCLAD--------PGD-----------AFLVPT  177 (471)
T ss_pred             CchHHHHHHHHHHHHHhCCCCcc-----CccceEEecccchhhHHHHHHhcC--------CCc-----------eeeecC
Confidence            34456666777777776665432     123588899999888655444211        011           122222


Q ss_pred             CCcchHHHHHHh-cCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCCCc
Q psy1678         248 QAHSSVERAGLL-GGVTIRGLPADD--SYKLRGDALEAAIEEDLKKGKI  293 (297)
Q Consensus       248 ~aH~Si~Kaa~~-lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G~~  293 (297)
                      ---.-+++-+++ .|++++.|.++.  .+++++++||+++++.++.|..
T Consensus       178 PyY~gfdrdl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~k  226 (471)
T KOG0256|consen  178 PYYPGFDRDLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLK  226 (471)
T ss_pred             CCCCcccccceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCc
Confidence            222234444443 578888888863  5799999999999999988864

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=84.27  E-value=8.5  Score=36.91  Aligned_cols=43  Identities=19%  Similarity=-0.087  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      +..+.++.+.|++++.-.-         ..-.|+++|||||-.|++.||.+.
T Consensus        84 ~~~~~~la~~l~~~~p~~~---------~~v~f~~sGseA~e~A~klar~~~  126 (423)
T PRK05964         84 HEPAERLAQRLVALTPGGL---------DHVFFSDSGSVAVEVALKMALQYW  126 (423)
T ss_pred             CHHHHHHHHHHHHhCCCCC---------CEEEEeCCcHHHHHHHHHHHHHHH
Confidence            3444556677777763111         147899999999999999999863

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=84.05  E-value=1.7  Score=41.16  Aligned_cols=100  Identities=14%  Similarity=0.079  Sum_probs=63.5

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |..+-..-++|..+++...+|||..-.          -+=-..||.||+.+..+--+.        |.        .=+-
T Consensus        64 YgGce~VD~vE~laierak~LFga~~a----------nVQPhSGs~AN~av~~All~p--------GD--------timg  117 (413)
T COG0112          64 YGGCEYVDEVEELAIERAKKLFGAEYA----------NVQPHSGSQANQAVYLALLQP--------GD--------TIMG  117 (413)
T ss_pred             cCCCeeHHHHHHHHHHHHHHHhCCCcc----------ccCCCCchHHHHHHHHHHcCC--------CC--------eEec
Confidence            445566788999999999999998731          222346899998777663211        10        0001


Q ss_pred             EEecCCCcchHHHHHHhcC--CceEEeeCC-CCCCcCHHHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGG--VTIRGLPAD-DSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg--~~v~~Vp~d-~~~~md~~~L~~~i~~~~  288 (297)
                      +-.+.-.|-+--.-..+.|  ++++.-++| +++.+|.+++++.+.+.+
T Consensus       118 m~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~k  166 (413)
T COG0112         118 LDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVK  166 (413)
T ss_pred             ccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHhC
Confidence            1123334433332222334  488888999 579999999999998754

>PRK08064 cystathionine beta-lyase; Provisional

Probab=84.01  E-value=6.5  Score=37.39  Aligned_cols=83  Identities=13%  Similarity=0.065  Sum_probs=50.3

Q ss_pred             ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678         164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG  243 (297)
Q Consensus       164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i  243 (297)
                      ...|....+|+    .++++.|.+.           .++++.|+.++..++.     .+.              ..+ .|
T Consensus        51 ~~~p~~~~le~----~lA~l~g~~~-----------~v~~~sG~~ai~~~l~-----~l~--------------~Gd-~V   95 (390)
T PRK08064         51 SGNPTREALED----IIAELEGGTK-----------GFAFASGMAAISTAFL-----LLS--------------KGD-HV   95 (390)
T ss_pred             CCChhHHHHHH----HHHHHhCCCC-----------eEEECCHHHHHHHHHH-----HhC--------------CCC-EE
Confidence            34566666665    6778888753           4556666766554442     111              011 35


Q ss_pred             EecCCCcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         244 YCSDQAHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       244 ~~s~~aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +++...|.+..    +.+...|+.++.|+.+     |+++|+++|++
T Consensus        96 lv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~~  137 (390)
T PRK08064         96 LISEDVYGGTYRMITEVLSRFGIEHTFVDMT-----NLEEVAQNIKP  137 (390)
T ss_pred             EEccCccchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCC
Confidence            66777776433    4556678888888764     57777777643

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=84.00  E-value=16  Score=33.56  Aligned_cols=85  Identities=11%  Similarity=-0.074  Sum_probs=54.5

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ...+.+++.+|.+           .-++|+|++++....+.+      .              .++ .|++.+-+.....
T Consensus        53 ~Lr~~ia~~~~~~-----------~I~it~Gs~~al~~~~~~------~--------------~gd-~v~v~~P~y~~~~  100 (330)
T PRK05664         53 GLEAAARAYYGAP-----------QLLPVAGSQAAIQALPRL------R--------------APG-RVGVLSPCYAEHA  100 (330)
T ss_pred             HHHHHHHHHhCCC-----------CEEECcCHHHHHHHHHHc------c--------------CCC-EEEEcCCChHHHH
Confidence            4456677777753           488999999987665321      0              012 3556667777788


Q ss_pred             HHHHhcCCceEEeeC-------------------CCCC-CcCHHHHHHHHHHHHHCC
Q psy1678         255 RAGLLGGVTIRGLPA-------------------DDSY-KLRGDALEAAIEEDLKKG  291 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~-------------------d~~~-~md~~~L~~~i~~~~~~G  291 (297)
                      ++++.+|++++.||+                   ++.| .|+.+.|++.++.+.+.|
T Consensus       101 ~~~~~~g~~~~~v~~~~~~~~~~~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~  157 (330)
T PRK05664        101 HAWRRAGHQVRELDEAEVEAALDSLDVLVVVNPNNPTGRRFDPARLLAWHARLAARG  157 (330)
T ss_pred             HHHHHcCCeEEEechhhHhhhhcCCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcC
Confidence            888888887666653                   3333 566677777666665555

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=83.85  E-value=10  Score=36.15  Aligned_cols=97  Identities=13%  Similarity=0.110  Sum_probs=66.5

Q ss_pred             ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678         164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG  243 (297)
Q Consensus       164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i  243 (297)
                      ..+|.+..+=+++++.|..++|-....        .-+++++||.+.-.|+..    ..++    |         .+.  
T Consensus        31 h~s~~F~~~~~~~~~~L~~v~~t~~~~--------~~ll~gsGt~amEAav~s----l~~p----g---------dkV--   83 (383)
T COG0075          31 HRSPDFVGIMKEVLEKLRKVFGTENGD--------VVLLSGSGTLAMEAAVAS----LVEP----G---------DKV--   83 (383)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCc--------EEEEcCCcHHHHHHHHHh----ccCC----C---------CeE--
Confidence            567888888899999999999987421        466777777554333332    1110    1         122  


Q ss_pred             EecCCCcc--hHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         244 YCSDQAHS--SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       244 ~~s~~aH~--Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      ++....=|  -+.+-+...|.+++.|.+...-.+|+++++++|+++
T Consensus        84 Lv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~  129 (383)
T COG0075          84 LVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKD  129 (383)
T ss_pred             EEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC
Confidence            22223333  456777888999999999977799999999999843

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=83.70  E-value=11  Score=35.41  Aligned_cols=82  Identities=18%  Similarity=0.221  Sum_probs=57.2

Q ss_pred             HHHHHHHHcC-CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         176 MLDWLGKMLD-LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       176 v~~~l~~llg-~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      +..-+++..| .+..         .-+.+.|++|.+-..+.+...                  .++ .++++.-+-....
T Consensus        62 l~~a~a~~~~~~~~~---------~V~~gnGsde~i~~l~~~~~~------------------~gd-~vl~~~Ptf~~Y~  113 (356)
T COG0079          62 LRAALAEYYGVVDPE---------NVLVGNGSDELIELLVRAFVE------------------PGD-TVLIPEPTFSMYE  113 (356)
T ss_pred             HHHHHHHHhCCCCcc---------eEEEcCChHHHHHHHHHHhhc------------------CCC-EEEEcCCChHHHH
Confidence            4456677777 4432         355578888877554444321                  011 3445556666667


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .+|...|..++.||.++ +++|++++.+.+.+
T Consensus       114 ~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~~~  144 (356)
T COG0079         114 IAAQLAGAEVVKVPLKE-FRLDLDAILAAIRD  144 (356)
T ss_pred             HHHHhcCCeEEEecccc-cccCHHHHHHhhhc
Confidence            78999999999999999 99999999998887

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=83.66  E-value=5.5  Score=37.85  Aligned_cols=81  Identities=15%  Similarity=0.083  Sum_probs=47.3

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      .|....+|+    +++++.|.+           ..++|+||++++..++.+.    +.               +.-.|++
T Consensus        51 ~pt~~~L~~----~lA~l~g~~-----------~~i~~~sg~~Ai~~~l~~l----~~---------------~GD~Vl~   96 (386)
T PRK08045         51 NPTRDVVQR----ALAELEGGA-----------GAVLTNTGMSAIHLVTTVF----LK---------------PGDLLVA   96 (386)
T ss_pred             CccHHHHHH----HHHHHhCCC-----------eEEEECCHHHHHHHHHHHH----cC---------------CCCEEEE
Confidence            455555554    778888843           4889999999888777642    11               1124666


Q ss_pred             cCCCcchHHH----HHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         246 SDQAHSSVER----AGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       246 s~~aH~Si~K----aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      +...|.+...    .+...|+.++.++     ..|+++|+++++
T Consensus        97 ~~~~y~~~~~~~~~~~~~~gi~v~~vd-----~~d~e~l~~~l~  135 (386)
T PRK08045         97 PHDCYGGSYRLFDSLAKRGCYRVLFVD-----QGDEQALRAALA  135 (386)
T ss_pred             cCCCcHHHHHHHHHHHhhCCeEEEEeC-----CCCHHHHHHhcc
Confidence            7777764332    2222344444442     256777776664

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=83.18  E-value=15  Score=35.38  Aligned_cols=41  Identities=22%  Similarity=0.215  Sum_probs=31.1

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      +..+.++.+.|++++..-+          .-.|+++|||||-.|++.||.+
T Consensus        92 ~~~~~~la~~l~~~~p~~~----------~v~f~~sGseA~e~AlklAr~~  132 (428)
T PRK12389         92 TELEIEFAKMLKEAIPSLE----------KVRFVNSGTEAVMTTIRVARAY  132 (428)
T ss_pred             CHHHHHHHHHHHHhCCCCc----------EEEEeCCHHHHHHHHHHHHHHh
Confidence            4455567777777764211          4789999999999999999986

>PRK06917 hypothetical protein; Provisional

Probab=83.03  E-value=7.4  Score=37.77  Aligned_cols=43  Identities=16%  Similarity=-0.018  Sum_probs=32.9

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      +..+.++.+.|++++....         ..-.||++|||||-.|++.||.+.
T Consensus        73 ~~~~~~lae~L~~~~p~~~---------~~v~f~~sGsEAve~AlklAr~~~  115 (447)
T PRK06917         73 SEPAEKLAKKLSDLSPGDL---------NWSFFVNSGSEANETAMKIAIQHF  115 (447)
T ss_pred             CHHHHHHHHHHHHhCCCCC---------CEEEEeCChHHHHHHHHHHHHHHH
Confidence            4555667788888874322         147899999999999999999874

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=82.90  E-value=5.8  Score=37.15  Aligned_cols=89  Identities=9%  Similarity=-0.013  Sum_probs=55.8

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCC-hhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGT-ASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsG-GT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      |-..++=.++.+.+.+++|.|++        ..-+|++| ||+++-.++..-    ..+    +        .+-+++.+
T Consensus        33 ~~f~~~~~~~~~~l~~l~~~~~~--------~~v~~~~gsgT~a~ea~~~nl----~~~----~--------~~~l~i~~   88 (349)
T TIGR01364        33 KEFEAVANEAESDLRELLNIPDN--------YEVLFLQGGATGQFAAVPLNL----LAE----G--------KVADYIVT   88 (349)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCC--------ceEEEEcCCchHHHHHHHHhc----CCC----C--------CeEEEEEC
Confidence            43446666799999999998643        24667766 998876655542    110    1        13356777


Q ss_pred             cCCCcchHHHHHHhcCCceEEeeCCCCC----CcCHHHHH
Q psy1678         246 SDQAHSSVERAGLLGGVTIRGLPADDSY----KLRGDALE  281 (297)
Q Consensus       246 s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~----~md~~~L~  281 (297)
                      +..+|-+. +-|..+|+ +..+.+++.+    ..|++.++
T Consensus        89 G~fg~r~~-~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~  126 (349)
T TIGR01364        89 GAWSKKAA-KEAKKYGV-VNVVASGKEGNYTKIPDPSTWE  126 (349)
T ss_pred             CHHHHHHH-HHHHHhCC-cEEEeccccCCCCCCCCHHhcC
Confidence            78888774 44555688 8888876544    34555443

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=82.74  E-value=7.3  Score=36.92  Aligned_cols=39  Identities=10%  Similarity=0.030  Sum_probs=28.7

Q ss_pred             ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHH
Q psy1678         164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGA  217 (297)
Q Consensus       164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~A  217 (297)
                      ...|-...+|+.    ++++.|.+           ..++|+||+.|+..++.+.
T Consensus        47 ~gnPt~~~lE~~----lA~l~g~~-----------~~~~~~sG~~Ai~~al~al   85 (377)
T TIGR01324        47 RGTLTHFALQDA----MCELEGGA-----------GCYLYPSGLAAVTNSILAF   85 (377)
T ss_pred             CCCccHHHHHHH----HHHHhCCC-----------cEEEECcHHHHHHHHHHHh
Confidence            345777788874    55667754           3788999999999888653

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK05965 hypothetical protein; Provisional

Probab=82.49  E-value=4.1  Score=39.69  Aligned_cols=43  Identities=12%  Similarity=-0.129  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      +..+.++.+.|++++..+.         ..-.|+++|||||-.||+.||.+.
T Consensus        89 ~~~~~~lae~L~~~~p~~~---------~~v~f~~sGSEAve~AlKlAr~~~  131 (459)
T PRK05965         89 SEPAIRLAAKLAERAPGSL---------NHVYFTLGGSDAVDSAVRFIRHYW  131 (459)
T ss_pred             CHHHHHHHHHHHhhCCCCc---------CEEEEeCChhHHHHHHHHHHHHHH
Confidence            3444456667777763211         147899999999999999999874

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=82.40  E-value=32  Score=34.39  Aligned_cols=83  Identities=11%  Similarity=0.084  Sum_probs=61.2

Q ss_pred             HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678         177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA  256 (297)
Q Consensus       177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka  256 (297)
                      -+..|+.+|.+.+          -.++.|.|-||...+.+.    .               .+.-.|++....|-|+.-+
T Consensus        76 qe~aA~~fgAd~t----------yFvvNGTS~ank~vi~a~----~---------------~~GD~VLvdRN~HKSi~~g  126 (557)
T COG1982          76 QELAARVFGADHT----------YFVVNGTSTANKAVINAV----L---------------TPGDKVLVDRNCHKSIHHG  126 (557)
T ss_pred             HHHHHHHhCCCce----------EEEECCccHHHHHHHHhh----c---------------CCCCEEEecCCccHHHHHH
Confidence            3578999999875          456788888888777664    1               1223577899999999999


Q ss_pred             HHhcCCceEEeeC--CC----CCCcCHHHHHHHHHHHH
Q psy1678         257 GLLGGVTIRGLPA--DD----SYKLRGDALEAAIEEDL  288 (297)
Q Consensus       257 a~~lg~~v~~Vp~--d~----~~~md~~~L~~~i~~~~  288 (297)
                      ..+.|...+.+..  |+    -|.++.+.+++++.+..
T Consensus       127 lilaGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~  164 (557)
T COG1982         127 LILAGATPVYLEPSRNPLYGIIGGIPLETFKEALLAHP  164 (557)
T ss_pred             HHHcCCceEEecCCCCccccccCCCCHHHHHHHHHhCh
Confidence            8888985554443  33    36899999999886643

>PLN02271 serine hydroxymethyltransferase

Probab=82.17  E-value=7.6  Score=38.90  Aligned_cols=95  Identities=15%  Similarity=0.094  Sum_probs=61.0

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      +-..-+||..+++...++||.+...+      +.-+---.||.||+.++++-    +.              ... +|++
T Consensus       189 ~~~iD~iE~la~era~~lF~~~~~~~------gaNVQp~SGs~AN~aV~~AL----l~--------------PGD-~IL~  243 (586)
T PLN02271        189 NQYIDQIERLCCERALAAFGLDSEKW------GVNVQPYSCTSANFAVYTGL----LL--------------PGD-RIMG  243 (586)
T ss_pred             ChhHHHHHHHHHHHHHHHhCCccccc------ccceeeccHHHHHHHHHHHh----cC--------------CCC-EEEE
Confidence            34456899999999999999874210      11233457999999887653    11              011 2333


Q ss_pred             -c--CCCcchHH------HHHHhcCCceEEee--CC-CCCCcCHHHHHHHHH
Q psy1678         246 -S--DQAHSSVE------RAGLLGGVTIRGLP--AD-DSYKLRGDALEAAIE  285 (297)
Q Consensus       246 -s--~~aH~Si~------Kaa~~lg~~v~~Vp--~d-~~~~md~~~L~~~i~  285 (297)
                       +  .-+|.|--      +-+...|+.+..+|  +| ++|.+|.++|++...
T Consensus       244 ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~  295 (586)
T PLN02271        244 LDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKAL  295 (586)
T ss_pred             ecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhh
Confidence             2  35666643      34455677666666  76 689999999998653

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=81.89  E-value=7.8  Score=37.39  Aligned_cols=83  Identities=17%  Similarity=0.034  Sum_probs=49.0

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|....+|+    .++++.|.+           ..+++++|++++..++.+...                  ... .|+
T Consensus        56 ~~pt~~~Le~----~lA~l~g~~-----------~~l~~ssG~~Ai~~al~al~~------------------~Gd-~Vl  101 (425)
T PRK06084         56 MNPTNDVLEQ----RVAALEGGV-----------GALAVASGMAAITYAIQTIAE------------------AGD-NIV  101 (425)
T ss_pred             CCchHHHHHH----HHHHHhCCC-----------ceeEehhHHHHHHHHHHHHhC------------------CCC-EEE
Confidence            3455556665    667777743           378899999999888876421                  011 345


Q ss_pred             ecCCCcchHHHHH-H---hcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSVERAG-L---LGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si~Kaa-~---~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...+......+ .   ..|+.+..++.     .|+++|+++|++
T Consensus       102 ~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~-----~d~e~le~ai~~  142 (425)
T PRK06084        102 SVAKLYGGTYNLLAHTLPRIGIETRFAAH-----DDIAALEALIDE  142 (425)
T ss_pred             EeCCCcchHHHHHHHhcccceeEEEEECC-----CCHHHHHHHhcc
Confidence            5555554333332 2   24555555543     378888888764

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=81.75  E-value=35  Score=32.99  Aligned_cols=45  Identities=18%  Similarity=0.011  Sum_probs=29.6

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      +....++.+.|++++......      ...-.++++|||||-.|++.||.+
T Consensus        81 ~~~~~~lae~L~~~~p~~~~~------~~~~f~~~sGsEA~e~AlklAr~~  125 (442)
T TIGR00709        81 TPLKDAFIEALLNIIPKRKMD------YKLQFPGPSGADAVEAAIKLAKTY  125 (442)
T ss_pred             cHHHHHHHHHHHHhCCCcCCC------ccEEEeCCCHHHHHHHHHHHHHHh
Confidence            345555677788887432100      011344689999999999999986

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=81.75  E-value=39  Score=32.16  Aligned_cols=38  Identities=16%  Similarity=0.067  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         173 EVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       173 E~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      ..++.+.|++.+...+          .-+||+||||||..|+++||..
T Consensus        90 ~~~lae~l~~~~~~~~----------~v~~~~sGseA~e~Alk~ar~~  127 (423)
T TIGR00713        90 EILLAKEIISRVPSVE----------MVRFVNSGTEATMSAVRLARGY  127 (423)
T ss_pred             HHHHHHHHHHhCCccc----------EEEEeCCHHHHHHHHHHHHHHh
Confidence            3445666667664332          3789999999999999999985

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=81.73  E-value=7  Score=37.12  Aligned_cols=93  Identities=14%  Similarity=0.013  Sum_probs=62.3

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      ....+|...++=+++.+.|.++++.|.+.       ..-+++++||.+.=.++..    .+.+             ....
T Consensus        30 ~~HRs~~F~~i~~e~~~~L~~l~~~~~~~-------~v~~l~GsGT~a~Eaa~~n----l~~~-------------~g~~   85 (374)
T TIGR01365        30 RSHRSKLGKEKLAEAIKKTREMLGVPADY-------LIGIVPASDTGAVEMALWS----MLGC-------------RGVD   85 (374)
T ss_pred             cCcCCHHHHHHHHHHHHHHHHHhCCCCCc-------EEEEECCchHHHHHHHHHH----cCCC-------------CCCe
Confidence            33568888889899999999999986432       2366788888765443333    1110             0112


Q ss_pred             EEEecCCCcchHH---HHHHhcCC-ceEEeeCCCCCCcCHHHHH
Q psy1678         242 VGYCSDQAHSSVE---RAGLLGGV-TIRGLPADDSYKLRGDALE  281 (297)
Q Consensus       242 ~i~~s~~aH~Si~---Kaa~~lg~-~v~~Vp~d~~~~md~~~L~  281 (297)
                      +++++   .|+-+   +.|..+|+ ++..+..+..-.+|++.++
T Consensus        86 vLv~g---~FG~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve  126 (374)
T TIGR01365        86 VLAWE---SFGKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVD  126 (374)
T ss_pred             EEEEC---HHHHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcC
Confidence            44443   55544   67777999 5888887766688999887

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK07678 aminotransferase; Validated

Probab=81.64  E-value=5.5  Score=38.72  Aligned_cols=41  Identities=20%  Similarity=0.062  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      ..+.++.+.|+++++...          .-.|+++|||||-.|++.||.+.
T Consensus        89 ~~~~~lae~l~~~~~~~~----------~v~f~~sGseA~e~AlklAr~~t  129 (451)
T PRK07678         89 EPAIKLAEKLNEWLGGEY----------VIFFSNSGSEANETAFKIARQYH  129 (451)
T ss_pred             HHHHHHHHHHHHhCCCCC----------EEEEeCCcHHHHHHHHHHHHHHH
Confidence            344456677777775432          37899999999999999999864

>PRK07049 methionine gamma-lyase; Validated

Probab=81.19  E-value=17  Score=35.06  Aligned_cols=84  Identities=21%  Similarity=0.116  Sum_probs=48.4

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      .|-...+|+    -++++.|.+           ..++++||+.++..++.+.-+                  ... .|++
T Consensus        82 ~Pt~~~Le~----~lA~leg~~-----------~~iv~~sG~~Ai~~~l~al~~------------------~Gd-~Vv~  127 (427)
T PRK07049         82 HPNSEIVED----RLAVYEGAE-----------SAALFSSGMSAIATTLLAFVR------------------PGD-VILH  127 (427)
T ss_pred             CcCHHHHHH----HHHHHhCCC-----------cEEEEccHHHHHHHHHHHHhC------------------CCC-EEEE
Confidence            466666766    556677743           478899999987766655311                  011 3445


Q ss_pred             cCCCcchHHHH----HHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         246 SDQAHSSVERA----GLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       246 s~~aH~Si~Ka----a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      ++.........    +..+|++++.++ +   ..|.++|++.|++.
T Consensus       128 ~~p~Y~~~~~~~~~~l~~~Gi~~v~~~-~---~~d~~~l~~~l~~~  169 (427)
T PRK07049        128 SQPLYGGTETLLAKTFRNFGVGAVGFA-D---GLSEAAIGAAAEAA  169 (427)
T ss_pred             cCCCcccHHHHHHHHHHhcCcEEEEEe-C---CCCHHHHHHHHHhh
Confidence            55555544443    344566655554 1   24666777666544

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=80.67  E-value=8.4  Score=36.69  Aligned_cols=39  Identities=18%  Similarity=0.135  Sum_probs=28.3

Q ss_pred             ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHH
Q psy1678         164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGA  217 (297)
Q Consensus       164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~A  217 (297)
                      ...|....+|+    -++++.|..           ..++|+||++++..++.+.
T Consensus        50 ~~npt~~~Le~----~lA~leg~e-----------~ivvt~gg~~Ai~~~l~al   88 (388)
T PRK08861         50 SGNPNRGLLEQ----TLSELESGK-----------GAVVTNCGTSALNLWVSAL   88 (388)
T ss_pred             CCCchHHHHHH----HHHHHhCCC-----------eEEEECCHHHHHHHHHHHH
Confidence            34566666776    567777753           4899999999998888663

>PRK07671 cystathionine beta-lyase; Provisional

Probab=80.53  E-value=7.8  Score=36.65  Aligned_cols=82  Identities=15%  Similarity=0.063  Sum_probs=46.8

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|....+|+    .++++.|.+.           .++++.|+.++..+ ...    +.               +.-.|+
T Consensus        48 ~~p~~~~Le~----~lA~l~g~~~-----------~~~~~sG~aai~~~-~~~----l~---------------~Gd~Vi   92 (377)
T PRK07671         48 GNPTRAALEE----LIAVLEGGHA-----------GFAFGSGMAAITAV-MML----FS---------------SGDHVI   92 (377)
T ss_pred             CChHHHHHHH----HHHHHhCCCc-----------eEEeCCHHHHHHHH-HHH----hC---------------CCCEEE
Confidence            3455666665    6788888753           56677777554432 211    11               111456


Q ss_pred             ecCCCcchHHH----HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSVER----AGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si~K----aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...|.+..+    .+..+|+.++.|+.     .|+++|+++|++
T Consensus        93 v~~~~y~~~~~~~~~~~~~~G~~v~~v~~-----~d~~~l~~ai~~  133 (377)
T PRK07671         93 LTDDVYGGTYRVMTKVLNRFGIEHTFVDT-----SNLEEVEEAIRP  133 (377)
T ss_pred             ECCCccchHHHHHHHHHhcCCeEEEEECC-----CCHHHHHHhcCC
Confidence            67776663333    33446777777754     277888777754

>PRK07481 hypothetical protein; Provisional

Probab=80.31  E-value=5.9  Score=38.48  Aligned_cols=44  Identities=14%  Similarity=-0.072  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      +..+.++.+.|+++++.+.-        ..-.|+++|||||-.|+++||.+.
T Consensus        85 ~~~~~~lae~L~~~~~~~~~--------~~v~f~~sGsEAve~AlklAr~~~  128 (449)
T PRK07481         85 HPRAIELSYELIDMFAPEGM--------RRVFFSSGGSDSVETALKLARQYW  128 (449)
T ss_pred             CHHHHHHHHHHHHhcCCCCC--------CEEEEcCchHHHHHHHHHHHHHHH
Confidence            34455567778888742211        147899999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	297
3k40_A	475	Crystal Structure Of Drosophila 3,4-Dihydroxyphenyl		1e-103
3rbf_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		8e-87
3rch_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		8e-87
1js3_A	486	Crystal Structure Of Dopa Decarboxylase In Complex		3e-81
4e1o_A	481	Human Histidine Decarboxylase Complex With Histidin		3e-75
3vp6_A	511	Structural Characterization Of Glutamic Acid Decarb		3e-08
2okj_A	504	The X-Ray Crystal Structure Of The 67kda Isoform Of		3e-08
2okk_A	497	The X-Ray Crystal Structure Of The 65kda Isoform Of		1e-07

>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine Decarboxylase Length = 475

Iteration: 1
 Score =  372 bits (955), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/234 (76%), Positives = 208/234 (88%), Gaps = 1/234 (0%)
Query: 63  EFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI 122
           EFKDFAK MVD++  YLENIR+RRVLP V+PGYL+PLIP+ AP+ P+ WQ+VM DIERVI
Sbjct: 5   EFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVI 64
Query: 123 MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 182
           MPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEVVM+DWLGK
Sbjct: 65  MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGK 124
Query: 183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242
           ML+LP EFLACSGGKGGGVIQGTASE+TLVALLGAKAK ++ VKE HP+W +  I+  LV
Sbjct: 125 MLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV 184
Query: 243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFY 296
           GYCSDQAHSSVERAGLLGGV +R + +++ +++RG ALE AIE+D+ +G IPFY
Sbjct: 185 GYCSDQAHSSVERAGLLGGVKLRSVQSEN-HRMRGAALEKAIEQDVAEGLIPFY 237

>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480

Iteration: 1
 Score =  316 bits (810), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 142/238 (59%), Positives = 185/238 (77%)
Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           + +EF+   K MVDYV NY+E I  R+V P VEPGYLRPLIP  AP  PDT++++++D+E
Sbjct: 2   NASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVE 61
Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct: 62  KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121
Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
           LGKML+LPK FL    G+GGGVIQG+ASEATLVALL A+ K + R++ A P+   + I+ 
Sbjct: 122 LGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIME 181
Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
            LV Y SDQAHSSVERAGL+GGV ++ +P+D ++ +R  AL+ A+E D   G IPF++
Sbjct: 182 KLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFM 239

>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480

Iteration: 1
 Score =  316 bits (810), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 142/238 (59%), Positives = 185/238 (77%)
Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           + +EF+   K MVDYV NY+E I  R+V P VEPGYLRPLIP  AP  PDT++++++D+E
Sbjct: 2   NASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVE 61
Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct: 62  KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121
Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
           LGKML+LPK FL    G+GGGVIQG+ASEATLVALL A+ K + R++ A P+   + I+ 
Sbjct: 122 LGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIME 181
Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
            LV Y SDQAHSSVERAGL+GGV ++ +P+D ++ +R  AL+ A+E D   G IPF++
Sbjct: 182 KLVAYSSDQAHSSVERAGLIGGVKLKAIPSDGNFAMRASALQEALERDKAAGLIPFFM 239

>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With The Inhibitor Carbidopa Length = 486

Iteration: 1
 Score =  298 bits (762), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 139/238 (58%), Positives = 183/238 (76%)
Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           + ++F+   K MVDY+ +YLE I  R+V P V+PGYLRPLIP TAP  PDT+++++ D+E
Sbjct: 2   NASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVE 61
Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct: 62  KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121
Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
           LGKML LP+ FLA   G+GGGVIQG+ASEATLVALL A+ K ++R++ A P      ++ 
Sbjct: 122 LGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLE 181
Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
            LV Y SDQAHSSVERAGL+GGV ++ +P+D  + +R  AL+ A+E D   G IPF++
Sbjct: 182 KLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV 239

>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481

Iteration: 1
 Score =  278 bits (710), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 122/236 (51%), Positives = 173/236 (73%), Gaps = 1/236 (0%)
Query: 63  EFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI 122
           E+++  + MVDY+  YL  +R+RRV P V+PGYLR  +PE+AP+ PD+W  +  DIER+I
Sbjct: 10  EYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERII 69
Query: 123 MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 182
           MPGV HW SP  HAY+P   S+P+++ D+L+D+I C+GFTW +SPACTELE+ ++DWL K
Sbjct: 70  MPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAK 129
Query: 183 MLDLPKEFLACS-GGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241
           ML LP+ FL      +GGGV+Q T SE+TL+ALL A+   +  +K + PD  +S + A L
Sbjct: 130 MLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARL 189
Query: 242 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
           V Y SDQAHSSVE+AGL+  V ++ LP DD++ LRG+AL+ AIEED ++G +P ++
Sbjct: 190 VAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFV 245

>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid Decarboxylase; Insights Into The Mechanism Of Autoinactivation Length = 511

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 21/239 (8%)
Query: 67  FAKAMVDYVGNYLENIRDR--RVLPTVEPGYLRPLIPE---TAPDTPDTWQEVMSDIERV 121
           F   +VD + NY+    DR  +VL    P  L   +        D P++ ++++ D    
Sbjct: 27  FLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDT 86
Query: 122 IMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLG 181
           +  GV   H P+F     T      +  + L+ +     FT+  +P    +E + L    
Sbjct: 87  LKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLK--- 142
Query: 182 KMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241
           KM    +E +  S   G G+     + + + +++ A+ K    VK      K    +  L
Sbjct: 143 KM----REIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKT-----KGMAAVPKL 193
Query: 242 VGYCSDQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
           V + S+Q+H S+++AG     G   +  +  ++  K+     EA I E  +KG +PFY+
Sbjct: 194 VLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYV 252

>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of Glutamic Acid Decarboxylase (Gad67) Length = 504

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 21/239 (8%)
Query: 67  FAKAMVDYVGNYLENIRDR--RVLPTVEPGYLRPLIPE---TAPDTPDTWQEVMSDIERV 121
           F   +VD + NY+    DR  +VL    P  L   +        D P++ ++++ D    
Sbjct: 24  FLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDT 83
Query: 122 IMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLG 181
           +  GV   H P+F     T      +  + L+ +     FT+  +P    +E + L    
Sbjct: 84  LKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLK--- 139
Query: 182 KMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241
           KM    +E +  S   G G+     + + + +++ A+ K    VK      K    +  L
Sbjct: 140 KM----REIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKT-----KGMAAVPKL 190
Query: 242 VGYCSDQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
           V + S+Q+H S+++AG     G   +  +  ++  K+     EA I E  +KG +PFY+
Sbjct: 191 VLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYV 249

>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of Glutamic Acid Decarboxylase (Gad65) Length = 497

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 18/237 (7%)
Query: 64  FKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIM 123
            +D    ++ YV    +  R  +V+    P  L         D P   +E++   +  + 
Sbjct: 24  LQDVMNILLQYVVKSFD--RSTKVIDFHYPNELLQEYNWELADQPQNLEEILMHCQTTLK 81
Query: 124 PGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKM 183
             +   H P++     T      + AD L+ +     FT+  +P    LE V L    KM
Sbjct: 82  YAIKTGH-PRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEIAPVFVLLEYVTLK---KM 137
Query: 184 LDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG 243
               +E +   GG G G+     + + + A++ A+ K    VKE     K    +  L+ 
Sbjct: 138 ----REIIGWPGGSGDGIFSPGGAISNMYAMMIARFKMFPEVKE-----KGMAALPRLIA 188
Query: 244 YCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
           + S+ +H S+++     G+   ++  +  D+  K+    LE  I E  +KG +PF +
Sbjct: 189 FTSEHSHFSLKKGAAALGIGTDSVILIKCDERGKMIPSDLERRILEAKQKGFVPFLV 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	297
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	1e-109
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	1e-108
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	1e-108
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	1e-96
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	2e-91
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	6e-91
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	4e-14
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	2e-11
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	1e-10
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score =  324 bits (833), Expect = e-109
 Identities = 139/238 (58%), Positives = 183/238 (76%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           + ++F+   K MVDY+ +YLE I  R+V P V+PGYLRPLIP TAP  PDT+++++ D+E
Sbjct: 2   NASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVE 61

Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct: 62  KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121

Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
           LGKML LP+ FLA   G+GGGVIQG+ASEATLVALL A+ K ++R++ A P      ++ 
Sbjct: 122 LGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLE 181

Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
            LV Y SDQAHSSVERAGL+GGV ++ +P+D  + +R  AL+ A+E D   G IPF++
Sbjct: 182 KLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV 239

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475

 Score =  321 bits (825), Expect = e-108
 Identities = 178/238 (74%), Positives = 208/238 (87%), Gaps = 1/238 (0%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           +  EFKDFAK MVD++  YLENIR+RRVLP V+PGYL+PLIP+ AP+ P+ WQ+VM DIE
Sbjct: 2   EAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIE 61

Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           RVIMPGVTHWHSPKFHAYFPTANSYPAIVAD+LS +IACIGFTWIASPACTELEVVM+DW
Sbjct: 62  RVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDW 121

Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
           LGKML+LP EFLACSGGKGGGVIQGTASE+TLVALLGAKAK ++ VKE HP+W +  I+ 
Sbjct: 122 LGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILG 181

Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
            LVGYCSDQAHSSVERAGLLGGV +R +   +++++RG ALE AIE+D+ +G IPFY 
Sbjct: 182 KLVGYCSDQAHSSVERAGLLGGVKLRSVQ-SENHRMRGAALEKAIEQDVAEGLIPFYA 238

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score =  320 bits (823), Expect = e-108
 Identities = 122/239 (51%), Positives = 174/239 (72%), Gaps = 1/239 (0%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           +  E+++  + MVDY+  YL  +R+RRV P V+PGYLR  +PE+AP+ PD+W  +  DIE
Sbjct: 7   EPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIE 66

Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           R+IMPGV HW SP  HAY+P   S+P+++ D+L+D+I C+GFTW +SPACTELE+ ++DW
Sbjct: 67  RIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDW 126

Query: 180 LGKMLDLPKEFLAC-SGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDII 238
           L KML LP+ FL      +GGGV+Q T SE+TL+ALL A+   +  +K + PD  +S + 
Sbjct: 127 LAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLN 186

Query: 239 ANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
           A LV Y SDQAHSSVE+AGL+  V ++ LP DD++ LRG+AL+ AIEED ++G +P ++
Sbjct: 187 ARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFV 245

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504

 Score =  292 bits (750), Expect = 1e-96
 Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 21/246 (8%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDR--RVLPTVEPGYLRPLIPE---TAPDTPDTWQEV 114
              +   F   +VD + NY+    DR  +VL    P  L   +        D P++ +++
Sbjct: 17  GEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQI 76

Query: 115 MSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEV 174
           + D    +  GV   H P+F     T      +  + L+ +     FT+  +P    +E 
Sbjct: 77  LVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQ 135

Query: 175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKD 234
           + L  + +++             G G+     + + + +++ A+ K    VK        
Sbjct: 136 ITLKKMREIVGWS-------SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGM---- 184

Query: 235 SDIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKG 291
              +  LV + S+Q+H S+++AG   G     +  +  ++  K+     EA I E  +KG
Sbjct: 185 -AAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKG 243

Query: 292 KIPFYI 297
            +PFY+
Sbjct: 244 YVPFYV 249

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497

 Score =  279 bits (716), Expect = 2e-91
 Identities = 39/243 (16%), Positives = 88/243 (36%), Gaps = 15/243 (6%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPE-TAPDTPDTWQEVMSDI 118
              EF          + +  E +        ++P  L   I      +     + V+ D+
Sbjct: 30  GSAEFASVMSHTTSAMKSVFEQVN--APYSGMDPKALEDAINAVDLDNKNAPLKSVIDDV 87

Query: 119 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLD 178
             ++         P   A+  T    PA+ A+ +  ++     +W  + + T +E  +++
Sbjct: 88  AELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVN 147

Query: 179 WLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPD-WKDSDI 237
           WL    DL ++          G+     +++  + L+ A+     ++           D 
Sbjct: 148 WLCDKYDLSEK--------ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDY 199

Query: 238 IANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIP 294
              L   CS ++H +V+++    G+    +  + A+    +    L+  I +   +G IP
Sbjct: 200 ADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIP 259

Query: 295 FYI 297
           F I
Sbjct: 260 FAI 262

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515

 Score =  278 bits (713), Expect = 6e-91
 Identities = 42/239 (17%), Positives = 93/239 (38%), Gaps = 19/239 (7%)

Query: 62  NEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERV 121
              +     +VD       ++  ++V    EP  L+ L+        ++ ++++     V
Sbjct: 41  ALLRAVFGVVVDEAIQKGTSVS-QKVCEWKEPEELKQLLDLELRSQGESQKQILERCRAV 99

Query: 122 IMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLG 181
           I   V   H P+F     +     A+   I+++S+    +T+  +P    +E  +L  L 
Sbjct: 100 IRYSVKTGH-PRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLR 158

Query: 182 KMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL 241
            ++             G G+     S + + A+  A+ +     K+          +  L
Sbjct: 159 ALVGWS---------SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGL-----RTLPPL 204

Query: 242 VGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
             + S + H S+++     G+   ++R + AD+  K+  + LE  I     +G +PF +
Sbjct: 205 ALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLV 263

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514

 Score = 71.5 bits (175), Expect = 4e-14
 Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 22/225 (9%)

Query: 64  FKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIM 123
            +    A  D   ++L ++R +     ++P   R       P       E++++I  +  
Sbjct: 36  IQSQPPARRDPTMDWLASLRSQ-----IKPYRDRFPSHARLPRAGLPRAEILAEIAAMGA 90

Query: 124 PGVTHWHSPKFHAYFPTANSYP-AIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK 182
                W            + +  A + ++ +             P+  + E  ++     
Sbjct: 91  AESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAH 150

Query: 183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV 242
           ML         +GG   G +    +E+ L+A+   +           P           V
Sbjct: 151 MLGGDA-----AGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAP---------EAV 196

Query: 243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED 287
                 AH++ ++A    G+ +   P D  Y+    A+  AI  +
Sbjct: 197 --VPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPN 239

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 31/216 (14%), Positives = 72/216 (33%), Gaps = 26/216 (12%)

Query: 75  VGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVI-MPGVTHWHSPK 133
           V    ++I D  ++ +       P +P           +V+ ++ ++  +   T W   K
Sbjct: 14  VTKVKQSIEDE-LIRSDSQLMNFPQLPSNGIP----QDDVIEELNKLNDLIPHTQWKEGK 68

Query: 134 FHAYFPTANSYPA-IVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLA 192
                         +                   PA  ++E  ++  + +M + P +   
Sbjct: 69  VSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSD--- 125

Query: 193 CSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS 252
                G G      +E+ L+A L AK   +       P          ++      AH+ 
Sbjct: 126 ----TGCGTTTSGGTESLLLACLSAKMYALHHRGITEP---------EII--APVTAHAG 170

Query: 253 VERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEED 287
            ++A    G+ +R +  D  +Y++    ++  I ++
Sbjct: 171 FDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFINKN 206

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 27/184 (14%), Positives = 60/184 (32%), Gaps = 20/184 (10%)

Query: 105 PDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWI 164
            +   + +E++ ++++        +          +      I   I+   +        
Sbjct: 6   QEKGVSEKEILEELKKYRS-LDLKYEDGNIFGSMCSNV--LPITRKIVDIFLETNLGDPG 62

Query: 165 ASPACTELEVVMLDWLGKMLDLPKEFLA-CSGGKGGGVIQGTASEATLVALLGAKAKTMQ 223
                  LE   +  LG +L+    +    SGG          +EA L+AL   K    +
Sbjct: 63  LFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGG----------TEANLMALRCIKNIWRE 112

Query: 224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAA 283
           + ++     +   II          AH S E+   +  +     P  + Y +    ++ A
Sbjct: 113 KRRKGLSKNEHPKII------VPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDA 166

Query: 284 IEED 287
           +E+ 
Sbjct: 167 VEDY 170

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score = 50.4 bits (120), Expect = 3e-07
 Identities = 16/132 (12%), Positives = 40/132 (30%), Gaps = 26/132 (19%)

Query: 166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRV 225
           +   + +  +    L              G     +    ++  ++   L A  K     
Sbjct: 125 ASGASIMYALTNKILESFFKQL-------GLNVHAIATPISTGMSISLCLSAARK----- 172

Query: 226 KEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGG---VTIRGLPADDSYKLRGDALEA 282
                    S+++          +H S  +A    G     +  +   D   +  + +E 
Sbjct: 173 ------KYGSNVV-----IYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIEN 221

Query: 283 AIEEDLKKGKIP 294
           AI+++++ G  P
Sbjct: 222 AIKKEIELGNRP 233

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 9e-05
 Identities = 41/291 (14%), Positives = 82/291 (28%), Gaps = 120/291 (41%)

Query: 33  VGNY------LENIRDRYVQL-----QRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLEN 81
           + N       LE ++    Q+      R     SNI   ++  +                
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS-SNIKLRIHSIQA--------------- 232

Query: 82  IRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAY---- 137
              RR+L      Y   L+             V+ ++           ++  ++A+    
Sbjct: 233 -ELRRLL--KSKPYENCLL-------------VLLNV----------QNAKAWNAFNLSC 266

Query: 138 ---FPTANSYPAIVADILSDSIAC--------IGFTWIASPACTELEVVMLDWLG-KMLD 185
                T       V D LS +           +  T        E++ ++L +L  +  D
Sbjct: 267 KILLTTRFKQ---VTDFLSAATTTHISLDHHSMTLT------PDEVKSLLLKYLDCRPQD 317

Query: 186 LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPD-WKDSDIIANLVGY 244
           LP+E    +                 ++++        R   A  D WK  +        
Sbjct: 318 LPRE--VLTTN------------PRRLSIIAE----SIRDGLATWDNWKHVNC------- 352

Query: 245 CSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAI-EEDLKKGKIP 294
             D+  + +E        ++  L   + Y+   D L  ++         IP
Sbjct: 353 --DKLTTIIE-------SSLNVLEPAE-YRKMFDRL--SVFPPSA---HIP 388

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	297
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	100.0
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	100.0
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	100.0
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	100.0
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	100.0
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	100.0
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	100.0
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.85
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.81
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.77
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.76
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.74
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.59
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.54
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.48
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	98.78
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	98.72
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	98.65
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	98.65
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	98.61
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	98.58
1svv_A	359	Threonine aldolase; structural genomics, structura	98.57
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	98.57
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	98.52
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	98.51
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	98.5
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	98.47
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	98.45
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	98.44
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	98.38
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	98.37
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	98.34
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	98.31
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	98.31
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	98.3
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	98.3
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	98.3
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	98.22
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	98.2
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	98.18
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	98.15
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	98.15
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	98.15
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	98.14
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	98.14
3nra_A	407	Aspartate aminotransferase; structural genomics, j	98.14
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	98.12
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	98.12
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	98.12
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	98.08
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	98.08
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	98.08
1iug_A	352	Putative aspartate aminotransferase; wild type, py	98.07
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	98.05
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	98.05
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	98.04
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	98.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	98.0
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	98.0
1vp4_A	425	Aminotransferase, putative; structural genomics, j	97.99
3rq1_A	418	Aminotransferase class I and II; structural genomi	97.99
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	97.99
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	97.98
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	97.97
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	97.97
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	97.96
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	97.96
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	97.96
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	97.96
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	97.95
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	97.94
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	97.93
3ele_A	398	Amino transferase; RER070207001803, structural gen	97.92
2fnu_A	375	Aminotransferase; protein-product complex, structu	97.92
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	97.9
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	97.88
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	97.87
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	97.87
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	97.86
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	97.86
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	97.86
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	97.86
1o69_A	394	Aminotransferase; structural genomics, unknown fun	97.84
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	97.84
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	97.83
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	97.83
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	97.83
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	97.83
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	97.82
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	97.82
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	97.81
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	97.81
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	97.8
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	97.8
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	97.77
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	97.76
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	97.76
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	97.75
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	97.75
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	97.74
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	97.74
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	97.74
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	97.73
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	97.72
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	97.7
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	97.69
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	97.68
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	97.67
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	97.66
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	97.65
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	97.65
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	97.64
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	97.64
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	97.63
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	97.62
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	97.61
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	97.61
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	97.6
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	97.6
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	97.58
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	97.55
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	97.5
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	97.49
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	97.49
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	97.48
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	97.44
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	97.39
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	97.38
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	97.36
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	97.35
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	97.34
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	97.34
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	97.32
3pj0_A	359	LMO0305 protein; structural genomics, joint center	97.32
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	97.3
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	97.29
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	97.29
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	97.29
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	97.24
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	97.2
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	97.18
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	97.17
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	97.16
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	97.15
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	97.15
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	97.13
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	97.12
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	97.1
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	97.08
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	97.06
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	97.06
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	97.01
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	97.01
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	97.0
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	96.98
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	96.98
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	96.96
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	96.0
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	96.94
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	96.92
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	96.89
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	96.87
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	96.86
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	96.85
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	96.83
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	96.78
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	96.77
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	96.75
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	96.74
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	96.73
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	96.72
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	96.71
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	96.68
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	96.66
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	96.65
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	96.64
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	96.64
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	96.6
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	96.59
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	96.59
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	96.55
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	96.53
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	96.5
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	96.47
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	96.47
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	96.45
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	96.43
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	96.36
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	96.36
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	96.34
1z7d_A	433	Ornithine aminotransferase; structural genomics co	96.32
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	96.31
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	96.25
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	96.09
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	96.02
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	96.02
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	96.01
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	95.99
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	95.97
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	95.96
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	95.92
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	95.86
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	95.77
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	95.74
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	95.57
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	95.52
3hmu_A	472	Aminotransferase, class III; structural genomics,	95.51
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	95.44
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	95.39
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	95.34
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	95.29
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	95.29
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	95.28
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	95.25
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	95.13
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	95.12
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	95.1
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	94.93
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	94.88
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	94.86
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	94.79
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	94.67
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	94.19
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	94.02
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	93.81
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	93.22
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	92.8
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	92.72
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	92.2
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	91.36
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	90.35
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	89.0
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	88.4
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	82.5

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=100.00  E-value=1.1e-44  Score=349.97  Aligned_cols=238  Identities=72%  Similarity=1.248  Sum_probs=213.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhhhhhcchhhhhccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhh
Q psy1678          17 GDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYL   96 (297)
Q Consensus        17 ~~~~~f~~~~~~~vd~i~~y~~~~~~~~v~~~v~p~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p~~l   96 (297)
                      ||+++||+++++|||+|+||++++++|||.|.++|+                                          ++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~------------------------------------------~l   38 (475)
T 3k40_A            1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPG------------------------------------------YL   38 (475)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCSSCTT------------------------------------------CS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHH------------------------------------------HH
Confidence            899999999999999999999999999998888765                                          34


Q ss_pred             hccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHH
Q psy1678          97 RPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVM  176 (297)
Q Consensus        97 ~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v  176 (297)
                      ++.++..+|++|.+++++++++.+.+.++.++|+||+|+||+++++.+++++++++++.+|+|+..|..+|++++||+++
T Consensus        39 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v  118 (475)
T 3k40_A           39 KPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVM  118 (475)
T ss_dssp             GGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSSCCCCCHHHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHH
T ss_pred             HHhcCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCcCceeeCCCCCcHHHHHHHHHHHHhCccccCccCCcHHHHHHHHH
Confidence            56677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678         177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA  256 (297)
Q Consensus       177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka  256 (297)
                      ++|+++++|+|++++..+.+.++|+||+|||+||++|+++||++.+.+.+..++++.+.+..++.+||+|+.+|+|+.|+
T Consensus       119 ~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~  198 (475)
T 3k40_A          119 MDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERA  198 (475)
T ss_dssp             HHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHH
T ss_pred             HHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHH
Confidence            99999999999865443344568999999999999999999999876655445544433334678999999999999999


Q ss_pred             HHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678         257 GLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI  297 (297)
Q Consensus       257 a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v  297 (297)
                      ++++|++++.||+|++| ||+++|+++|+++.++|.+|++|
T Consensus       199 ~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v  238 (475)
T 3k40_A          199 GLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYA  238 (475)
T ss_dssp             HHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEE
Confidence            99999999999999999 99999999999999999988864

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.2e-43  Score=343.12  Aligned_cols=242  Identities=48%  Similarity=0.933  Sum_probs=214.7

Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHHhhhhhcchhhhhccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCh
Q psy1678          14 IIMGDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEP   93 (297)
Q Consensus        14 ~~~~~~~~f~~~~~~~vd~i~~y~~~~~~~~v~~~v~p~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p   93 (297)
                      ..-||+++||+++++|+|+|+||++++++|||.|+++|+                                         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------------------------------   41 (481)
T 4e1o_A            3 LGSMEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPG-----------------------------------------   41 (481)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHHHHSGGGSCSSCCCCTT-----------------------------------------
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHH-----------------------------------------
Confidence            346999999999999999999999999999988887754                                         


Q ss_pred             hhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHH
Q psy1678          94 GYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELE  173 (297)
Q Consensus        94 ~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE  173 (297)
                       ++++.++..+|++|.+++++++++.+.+.++.++|+||+|++|+++++.+++++++++.+++|+|+..|..+|++++||
T Consensus        42 -~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~p~~~~lE  120 (481)
T 4e1o_A           42 -YLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELE  120 (481)
T ss_dssp             -TTGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHHHCCCCSSTTTCHHHHHHH
T ss_pred             -HHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCCHHHHHHHHHHHHhCcccCCcCCCcHHHHHH
Confidence             3456777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCccccc-cCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch
Q psy1678         174 VVMLDWLGKMLDLPKEFLA-CSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS  252 (297)
Q Consensus       174 ~~v~~~l~~llg~~~~~~~-~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S  252 (297)
                      +++++|+++++|+|..++. .+.+.++|+||+|||+||++|+++||++.+.+.+..++++.+.+..++.+||+|+.+|+|
T Consensus       121 ~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s  200 (481)
T 4e1o_A          121 MNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSS  200 (481)
T ss_dssp             HHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHH
T ss_pred             HHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHH
Confidence            9999999999999976421 122345799999999999999999999987766555655544344478899999999999


Q ss_pred             HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678         253 VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI  297 (297)
Q Consensus       253 i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v  297 (297)
                      +.|++.++|.+++.||+|++|+||+++|+++|+++.++|.+|++|
T Consensus       201 ~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~v  245 (481)
T 4e1o_A          201 VEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFV  245 (481)
T ss_dssp             HHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEE
Confidence            999999999999999999999999999999999999999999865

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=100.00  E-value=1.3e-38  Score=307.34  Aligned_cols=239  Identities=56%  Similarity=1.034  Sum_probs=202.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhhhhhcchhhhhccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhh
Q psy1678          17 GDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYL   96 (297)
Q Consensus        17 ~~~~~f~~~~~~~vd~i~~y~~~~~~~~v~~~v~p~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p~~l   96 (297)
                      ||+++||+.+++|+|+|++|+++++++||.|.++|+                                          ++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~   38 (486)
T 1js3_A            1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPG------------------------------------------YL   38 (486)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCCCCTT------------------------------------------CS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCHH------------------------------------------HH
Confidence            789999999999999999999999988888776654                                          34


Q ss_pred             hccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHH
Q psy1678          97 RPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVM  176 (297)
Q Consensus        97 ~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v  176 (297)
                      ++.++..+|++|.+.+++++++.+.+.++..+|+||+|+||++++++++++++++++.++|+|...|..+|..+++|.++
T Consensus        39 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~  118 (486)
T 1js3_A           39 RPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVM  118 (486)
T ss_dssp             GGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHH
T ss_pred             HHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeCCCCCCHHHHHHHHHHHHhCcCccccccChhHHHHHHHH
Confidence            46677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678         177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA  256 (297)
Q Consensus       177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka  256 (297)
                      ++|+++++|++..+.....+.++|+||+|||+||++|++++|+...++.+..+.++.+.+..++.+||+|+.+|+|+.|+
T Consensus       119 ~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~  198 (486)
T 1js3_A          119 MDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERA  198 (486)
T ss_dssp             HHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHH
T ss_pred             HHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHH
Confidence            99999999998643211112346999999999999999999987554332221111110001356799999999999999


Q ss_pred             HHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678         257 GLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI  297 (297)
Q Consensus       257 a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v  297 (297)
                      +.++|++++.||+|++|+||+++|+++|++++++|.+|++|
T Consensus       199 ~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~v  239 (486)
T 1js3_A          199 GLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV  239 (486)
T ss_dssp             HHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEE
Confidence            99999999999999999999999999999999999988765

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=100.00  E-value=3.1e-35  Score=286.38  Aligned_cols=225  Identities=22%  Similarity=0.342  Sum_probs=188.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCChhhhhcc---CCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccc
Q psy1678          60 DVNEFKDFAKAMVDYVGNYLENIRDR--RVLPTVEPGYLRPL---IPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKF  134 (297)
Q Consensus        60 ~~e~f~~~l~~v~d~i~~~~~~~~~~--pv~~~~~p~~l~~~---~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~  134 (297)
                      +.++++++++++++.+++|+++..++  +|.++..|++++..   ++..+|++|.+.+++++++.+.+.++ ..|+||+|
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~p~f   98 (511)
T 3vp6_A           20 GEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYG-VRTGHPRF   98 (511)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHHCBTTBCCCCCSSCCCHHHHHHHHHHHHHTS-CCTTSTTE
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHhhcc-CCCCCCCc
Confidence            34445555555555555555544332  46667778888887   88899999999999999999987766 56899999


Q ss_pred             cccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHH
Q psy1678         135 HAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVAL  214 (297)
Q Consensus       135 ~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al  214 (297)
                      |||+++++.+++++++++++.+|+|...|..+|..+++|.++++|+++++|++.+.       .+|+||+|||+||++|+
T Consensus        99 ~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~-------~~~~~t~ggt~a~~~al  171 (511)
T 3vp6_A           99 FNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKD-------GDGIFSPGGAISNMYSI  171 (511)
T ss_dssp             ESSSSCCCCHHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSS-------CEEEEESSHHHHHHHHH
T ss_pred             eEeecCCCcHHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCC-------CceEECCchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998531       47999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCC---ceEEeeCCCCCCcCHHHHHHHHHHHHHCC
Q psy1678         215 LGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKG  291 (297)
Q Consensus       215 ~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~---~v~~Vp~d~~~~md~~~L~~~i~~~~~~G  291 (297)
                      +++|++.+++.+..|.  .   ..++.+||+|+.+|+|+.|+++++|+   +++.||+|++|+||+++|+++|+++.++|
T Consensus       172 ~~a~~~~~~~~~~~G~--~---~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g  246 (511)
T 3vp6_A          172 MAARYKYFPEVKTKGM--A---AVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKG  246 (511)
T ss_dssp             HHHHHHHCTHHHHHCG--G---GSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhhhhcCc--c---cCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcC
Confidence            9999976443333331  0   12577899999999999999999999   99999999999999999999999999999


Q ss_pred             CccEEc
Q psy1678         292 KIPFYI  297 (297)
Q Consensus       292 ~~Pf~v  297 (297)
                      ..|++|
T Consensus       247 ~~~~~v  252 (511)
T 3vp6_A          247 YVPFYV  252 (511)
T ss_dssp             CEEEEE
T ss_pred             CCcEEE
Confidence            988875

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=100.00  E-value=3.6e-34  Score=277.77  Aligned_cols=232  Identities=22%  Similarity=0.331  Sum_probs=193.2

Q ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHhhhhhcchhhhhccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q psy1678          13 SIIMGDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVE   92 (297)
Q Consensus        13 ~~~~~~~~~f~~~~~~~vd~i~~y~~~~~~~~v~~~v~p~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~   92 (297)
                      .|-.||+++||+.+++|+|+|++|++++.+++                                        ++|.++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~   51 (504)
T 2okj_A           12 LPAKNGEEQTVQFLLEVVDILLNYVRKTFDRS----------------------------------------TKVLDFHH   51 (504)
T ss_dssp             TTSTTCHHHHHHHHHHHHHHHHHHHHHHTCTT----------------------------------------SCSCCCCC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHhhccCC----------------------------------------CCCCCCCC
Confidence            34458888888888888888888888777654                                        24555666


Q ss_pred             hhhhhcc---CCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchh
Q psy1678          93 PGYLRPL---IPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPAC  169 (297)
Q Consensus        93 p~~l~~~---~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~  169 (297)
                      |+++++.   ++..+|++|.+.+++++++++.+.++. .+.||+|++|++++..+.+++++++++++|+|...|..+|..
T Consensus        52 p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~  130 (504)
T 2okj_A           52 PHQLLEGMEGFNLELSDHPESLEQILVDCRDTLKYGV-RTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVF  130 (504)
T ss_dssp             HHHHHSCBTTBCCCCCSSCCCHHHHHHHHHHHHHTSC-CTTCTTEESSSSCCCCHHHHHHHHHHHHHCCBSSCTTTCHHH
T ss_pred             HHHHHHHhhccCCCCCCCCCCHHHHHHHHHHHhhccC-CCCCCCEEEEccCCCCHHHHHHHHHHHhhccCCCchhhChHH
Confidence            7777777   788999999999999999988776555 556999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      +++|.++++|+++++|++.+       ..+|+||+|||+||++|++++|++.++..+..|.  .   ..++++|++|+.+
T Consensus       131 ~~le~~~~~~la~~~g~~~~-------~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~--~---~~~~~~v~~s~~~  198 (504)
T 2okj_A          131 VLMEQITLKKMREIVGWSSK-------DGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGM--A---AVPKLVLFTSEQS  198 (504)
T ss_dssp             HHHHHHHHHHHHHHHTCCSS-------SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCG--G---GSCCEEEEEETTS
T ss_pred             HHHHHHHHHHHHHHhCCCCC-------CCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCc--c---ccCCeEEEECCcc
Confidence            99999999999999999831       1369999999999999999999865432211120  0   0135689999999


Q ss_pred             cchHHHHHHhcCC---ceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678         250 HSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI  297 (297)
Q Consensus       250 H~Si~Kaa~~lg~---~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v  297 (297)
                      |+|+.|++.++|+   +++.||+|++|+||+++|+++|+++.++|..|++|
T Consensus       199 h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V  249 (504)
T 2okj_A          199 HYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYV  249 (504)
T ss_dssp             CTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             hHHHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEE
Confidence            9999999999988   89999999999999999999999999999888765

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=100.00  E-value=5.8e-32  Score=263.16  Aligned_cols=227  Identities=19%  Similarity=0.285  Sum_probs=199.2

Q ss_pred             CCCCChHHHHHHHHHHHHHHHH-HHHhcCC--CCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCc
Q psy1678          56 NIMGDVNEFKDFAKAMVDYVGN-YLENIRD--RRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSP  132 (297)
Q Consensus        56 ~~p~~~e~f~~~l~~v~d~i~~-~~~~~~~--~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p  132 (297)
                      +.++++++|+++++++++.+.+ |+++..+  +||.++..|++++..++..+|++|.+.+++++++++.+.++. .+.||
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~p  109 (515)
T 2jis_A           31 SLAGDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRSQGESQKQILERCRAVIRYSV-KTGHP  109 (515)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHTTTGGGCTTSCSCCCCCHHHHHHHHCCCCCSSCCCHHHHHHHHHHHHHHSC-CTTST
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCHHHHHhhcccCCCCCCCCHHHHHHHHHHHhcCCC-CCCCC
Confidence            3458999999999999999999 9988765  499999999999988899999999999999999988766555 55699


Q ss_pred             cccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHH
Q psy1678         133 KFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLV  212 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~  212 (297)
                      +|++|++++..+.++++++++..+|+|...|..+|.++++|.++++|+++++|++.         .+|+||+|||+||++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~---------~~~~~t~ggtea~~~  180 (515)
T 2jis_A          110 RFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSS---------GDGIFCPGGSISNMY  180 (515)
T ss_dssp             TEESSSCCCCCHHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSS---------CEEEEESSHHHHHHH
T ss_pred             CeEEEeeCCCCHHHHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhCCCC---------CCeEEcCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999984         369999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCC---ceEEeeCCCCCCcCHHHHHHHHHHHHH
Q psy1678         213 ALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDALEAAIEEDLK  289 (297)
Q Consensus       213 Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~---~v~~Vp~d~~~~md~~~L~~~i~~~~~  289 (297)
                      |++++|++.++..+..|.     ...++++|++|+.+|+|+.|++.++|+   +++.||+|++|+||+++|+++|+++.+
T Consensus       181 al~~ar~~~~~~~~~~G~-----~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~  255 (515)
T 2jis_A          181 AVNLARYQRYPDCKQRGL-----RTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEA  255 (515)
T ss_dssp             HHHHHHHHHCTTHHHHCG-----GGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHhhcCc-----cccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHh
Confidence            999999865321111120     002467899999999999999999998   899999999999999999999999999


Q ss_pred             CCCccEEc
Q psy1678         290 KGKIPFYI  297 (297)
Q Consensus       290 ~G~~Pf~v  297 (297)
                      +|..|++|
T Consensus       256 ~g~~~~~V  263 (515)
T 2jis_A          256 EGAVPFLV  263 (515)
T ss_dssp             TTCEEEEE
T ss_pred             CCCCcEEE
Confidence            99888765

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=100.00  E-value=1.6e-31  Score=258.80  Aligned_cols=239  Identities=16%  Similarity=0.249  Sum_probs=204.6

Q ss_pred             hhhccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhccCCC-CCCCCCCCHHHHHHHHHHHHcCC
Q psy1678          47 LQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPE-TAPDTPDTWQEVMSDIERVIMPG  125 (297)
Q Consensus        47 ~~v~p~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p~~l~~~~~~-~lP~~g~~~~~il~~l~~~~~~~  125 (297)
                      +.++..+-...+++.++|++.++.+++.+.+|+++.. +| .+...|+++++.++. .+|++|.+.+++++++.+.+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~   94 (497)
T 2qma_A           17 EEWKKHFIHTGELGSAEFASVMSHTTSAMKSVFEQVN-AP-YSGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAKN   94 (497)
T ss_dssp             HHHGGGBCCSSTTTTHHHHHHHHHHHHHHHHHHHHCC-SS-SCCCCHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHTTTT
T ss_pred             chHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhhcc-CC-CCCCCHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhcC
Confidence            3344456667788999999999999999999999873 34 677789999988886 58999999999999999999999


Q ss_pred             CCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCC
Q psy1678         126 VTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGT  205 (297)
Q Consensus       126 ~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsG  205 (297)
                      .++|+||+|++|+.+++.+++++++++...+|+|...|..+|+.+++|+++++|+++++|+++.        ..|+||+|
T Consensus        95 ~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~--------~~~~~t~g  166 (497)
T 2qma_A           95 AIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEK--------ADGIFTSG  166 (497)
T ss_dssp             SCCTTSTTBCSSSCCCCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTT--------CEEEEESS
T ss_pred             CCCCCCCCeeEeCCCCCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCC--------CCeEEcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999752        36999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCC---CceEEEecCCCcchHHHHHHhcCC---ceEEeeCCCCCCcCHHH
Q psy1678         206 ASEATLVALLGAKAKTMQRVKEAHPDWKDSDII---ANLVGYCSDQAHSSVERAGLLGGV---TIRGLPADDSYKLRGDA  279 (297)
Q Consensus       206 GT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~---~~~~i~~s~~aH~Si~Kaa~~lg~---~v~~Vp~d~~~~md~~~  279 (297)
                      ||+||++|+++||++...+..  ++.....|..   ++.+|++|+.+|+|+.|++.++|+   +++.||+|++|+||+++
T Consensus       167 gt~a~~~al~~ar~~~~~~~~--~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~  244 (497)
T 2qma_A          167 GTQSNQMGLMLARDWIADKLS--GHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITK  244 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH--CCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGG
T ss_pred             chHHHHHHHHHHHHHHHHhhc--ccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHH
Confidence            999999999999987553210  1110001111   356899999999999999999987   89999999999999999


Q ss_pred             HHHHHHHHHHCCCccEEc
Q psy1678         280 LEAAIEEDLKKGKIPFYI  297 (297)
Q Consensus       280 L~~~i~~~~~~G~~Pf~v  297 (297)
                      |+++|+++.++|.+|++|
T Consensus       245 L~~~i~~~~~~~~~~~~v  262 (497)
T 2qma_A          245 LDEVIAQAKAEGLIPFAI  262 (497)
T ss_dssp             HHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHCCCcceEE
Confidence            999999998889877654

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.85  E-value=2e-20  Score=178.62  Aligned_cols=178  Identities=13%  Similarity=0.093  Sum_probs=140.1

Q ss_pred             hhhhhccCCCCCCCCCCCHHHHHHHHHHHH-cCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhH
Q psy1678          93 PGYLRPLIPETAPDTPDTWQEVMSDIERVI-MPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTE  171 (297)
Q Consensus        93 p~~l~~~~~~~lP~~g~~~~~il~~l~~~~-~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~  171 (297)
                      ...++..++..+|++|.+.+++++++.+.+ .++..+++||+|++   ++..  ..+.+++..++|.|...|..+|.+.+
T Consensus         7 ~~~~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~---~~~~--~~v~e~~~~a~~~~~~~~~~~~~~~~   81 (452)
T 2dgk_A            7 KSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQ---TWDD--ENVHKLMDLSINKNWIDKEEYPQSAA   81 (452)
T ss_dssp             --------CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC---CCCC--HHHHHHHHHTTTCBTTCTTTCHHHHH
T ss_pred             hHHhhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC---CCch--HHHHHHHHHHhccCCCChhhChhHHH
Confidence            334556677889999999999999999988 67787899999887   2222  35799999999999889999999999


Q ss_pred             HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc
Q psy1678         172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS  251 (297)
Q Consensus       172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~  251 (297)
                      +|.++.+|+++++|.+.+..    +..+|+||+|||+||++|++++|++...+.+..|..      ..+..|++|+ +|+
T Consensus        82 l~~~~~~~la~l~g~~~~~~----~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~------~~~~~vi~~~-~h~  150 (452)
T 2dgk_A           82 IDLRCVNMVADLWHAPAPKN----GQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKP------TDKPNLVCGP-VQI  150 (452)
T ss_dssp             HHHHHHHHHHHHTTCCCCTT----SCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCC------CSCCEEEESS-CCH
T ss_pred             HHHHHHHHHHHHhCCCcccc----cCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCC------CCCcEEEECC-CcH
Confidence            99999999999999986310    012499999999999999999988654432222210      1234677888 999


Q ss_pred             hHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         252 SVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       252 Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      |+.+++.++|++++.||+|+ +|+||+++|+++|++
T Consensus       151 ~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i~~  186 (452)
T 2dgk_A          151 CWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDE  186 (452)
T ss_dssp             HHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT
T ss_pred             HHHHHHHHcCceEEEEecCCCCCeECHHHHHHHHhh
Confidence            99999999999999999997 899999999999965

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.81  E-value=8.3e-19  Score=170.07  Aligned_cols=185  Identities=18%  Similarity=0.182  Sum_probs=147.2

Q ss_pred             CCCCCChhhhhccCCC-CCCCCCCCHHHHHHHHHHHHcCCCCCCCCcccc-ccCCCCCCHHHHHHHHHHHhccccccccc
Q psy1678          87 VLPTVEPGYLRPLIPE-TAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFH-AYFPTANSYPAIVADILSDSIACIGFTWI  164 (297)
Q Consensus        87 v~~~~~p~~l~~~~~~-~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~-g~~~s~~~~~svl~d~l~~~lN~n~~~~~  164 (297)
                      ..+.-.+.++++.++. .+|++|.+.+++++.+.+.+..    ..||+++ +.+.+. .+...+.+++..++|.|...|.
T Consensus        14 ~~~~~~~~~~~~~lp~~~~p~~~~~~~~~~~~~~~~i~l----~gnp~~~l~s~~t~-~~~~~v~~~l~~~~~~~~~~~~   88 (502)
T 3hbx_A           14 VHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELML----DGNPRLNLASFVTT-WMEPECDKLIMSSINKNYVDMD   88 (502)
T ss_dssp             CSCTTTSSGGGSCCCSSSCCSSCCCHHHHHHHHHHHGGG----SCCGGGBTTCCSCC-CCCHHHHHHHHHTTTCBTTCTT
T ss_pred             ccccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHhcc----CCCCCceeccccCC-CCCHHHHHHHHHHhccCCCChh
Confidence            3344467888888887 9999999999999999987642    3568753 332222 2233578899999999999999


Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      .+|.++++|.++++|+++++|++.+.    .....|++|+|||+||+++++++++....+.+..|..      ..+..|+
T Consensus        89 ~~p~~~~le~~~~~~la~l~g~~~~~----~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~------~~~~~vi  158 (502)
T 3hbx_A           89 EYPVTTELQNRCVNMIAHLFNAPLEE----AETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKP------VDKPNIV  158 (502)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCCS----SCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCC------CSCCEEE
T ss_pred             cChhHHHHHHHHHHHHHHHhCCCccc----ccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCC------CCCcEEE
Confidence            99999999999999999999998210    1124689999999999999999988766554433421      2345789


Q ss_pred             ecCCCcchHHHHHHhcCCceEEeeCCCC-CCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~-~~md~~~L~~~i~~  286 (297)
                      +|+.+|+|+.++++++|+.++.||++++ |+||+++|+++|++
T Consensus       159 ~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~  201 (502)
T 3hbx_A          159 TGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDE  201 (502)
T ss_dssp             EETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHCCT
T ss_pred             EcCCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHHhh
Confidence            9999999999999999999999999876 99999999999875

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.77  E-value=3.5e-18  Score=164.68  Aligned_cols=169  Identities=16%  Similarity=0.207  Sum_probs=142.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHcC-CCCCCCCccccccCCCCC-CHHHHHHHHHHHhccccccccccCchhhHHHHHHH
Q psy1678         100 IPETAPDTPDTWQEVMSDIERVIMP-GVTHWHSPKFHAYFPTAN-SYPAIVADILSDSIACIGFTWIASPACTELEVVML  177 (297)
Q Consensus       100 ~~~~lP~~g~~~~~il~~l~~~~~~-~~~~~~~p~~~g~~~s~~-~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~  177 (297)
                      ....+|++|.+.+++++++++.... ....|.+|+++|+++.++ ....++.+.+....+.|...|..+|...++|.++.
T Consensus        34 ~~~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  113 (497)
T 3mc6_A           34 NFPQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVV  113 (497)
T ss_dssp             CCSSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHH
T ss_pred             cccCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHH
Confidence            3468999999999999999998764 567899999999987664 44566677777777778888999999999999999


Q ss_pred             HHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHH
Q psy1678         178 DWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAG  257 (297)
Q Consensus       178 ~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa  257 (297)
                      +|+++++|++..       ...++||+|||+||.+++.++|++...+   .|        ..+..|+++..+|+++.+++
T Consensus       114 ~~la~~~g~~~~-------~~~~~~~~ggt~a~~~a~~a~~~~~~~~---~g--------~~~~~Vi~~~~~h~~~~~~~  175 (497)
T 3mc6_A          114 SMVLRMFNAPSD-------TGCGTTTSGGTESLLLACLSAKMYALHH---RG--------ITEPEIIAPVTAHAGFDKAA  175 (497)
T ss_dssp             HHHHHHTTCCTT-------TCCEEEESSHHHHHHHHHHHHHHHHHHH---SC--------CSSCEEEEETTSCHHHHHHH
T ss_pred             HHHHHHhCCCCC-------CCeEEEcCcHHHHHHHHHHHHHHHHHhc---CC--------CCCceEEEeCCccHHHHHHH
Confidence            999999999821       1379999999999999999999875432   11        12347889999999999999


Q ss_pred             HhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         258 LLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       258 ~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      .++|++++.||+|+ +|+||+++|+++|++
T Consensus       176 ~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~  205 (497)
T 3mc6_A          176 YYFGMKLRHVELDPTTYQVDLGKVKKFINK  205 (497)
T ss_dssp             HHSCCEEEEECBCTTTCSBCTTTTGGGCCS
T ss_pred             HHcCCeEEEEecCcccCcCCHHHHHHHHhh
Confidence            99999999999998 899999999998864

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.76  E-value=2e-18  Score=164.40  Aligned_cols=154  Identities=11%  Similarity=0.041  Sum_probs=120.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHcCCCCCCC-----------------CccccccCCCCCCHHHHHHHHHHHhccccccccc
Q psy1678         102 ETAPDTPDTWQEVMSDIERVIMPGVTHWH-----------------SPKFHAYFPTANSYPAIVADILSDSIACIGFTWI  164 (297)
Q Consensus       102 ~~lP~~g~~~~~il~~l~~~~~~~~~~~~-----------------~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~  164 (297)
                      ..+|++|++.++|..+|.+.-......|.                 .||||||+++.    ++.+||++.    |. .|.
T Consensus        21 ~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~----~~~~d~l~~----~~-~~~   91 (450)
T 3bc8_A           21 GKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI----GRSGDISAV----QP-KAA   91 (450)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB----CC-----------CC-SBH
T ss_pred             ccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecch----hHHHHHHHh----Cc-ccc
Confidence            47999999999999999887655555552                 36899999986    456788887    44 889


Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh-HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS-EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG  243 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT-~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i  243 (297)
                      .+|++..+|+.++.|+.+++|+|+.        .+|++++||| ++++++|.+||+...+               .+.+|
T Consensus        92 ~~~~~~~~e~~~~~~~~~~lGlp~~--------~~~~lV~GaT~~~~a~~L~aar~~~~~---------------~~~vi  148 (450)
T 3bc8_A           92 GSSLLNKITNSLVLNVIKLAGVHSV--------ASCFVVPMATGMSLTLCFLTLRHKRPK---------------AKYII  148 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTC--------CEEEEESSCHHHHHHHHHHHHHHHCTT---------------CCEEE
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCC--------ceEEEECCHHHHHHHHHHHHcchhhcC---------------CCEEE
Confidence            9999999999999999999999975        3589999998 9999999999884210               23344


Q ss_pred             EecCCCcchHHHHHHhcCCceEEeeC---CCCCCcCHHHHHHHHHHHH
Q psy1678         244 YCSDQAHSSVERAGLLGGVTIRGLPA---DDSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       244 ~~s~~aH~Si~Kaa~~lg~~v~~Vp~---d~~~~md~~~L~~~i~~~~  288 (297)
                       ++..+|.|+.||+.++|+..+.|++   ++.++||+++|+++|+++.
T Consensus       149 -v~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~  195 (450)
T 3bc8_A          149 -WPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELG  195 (450)
T ss_dssp             -EECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHC
T ss_pred             -EECCcHHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcC
Confidence             4567999999999999997666654   7789999999999999875

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.74  E-value=7.4e-18  Score=163.37  Aligned_cols=169  Identities=15%  Similarity=0.151  Sum_probs=145.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCC-CCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHH
Q psy1678         102 ETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA-NSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWL  180 (297)
Q Consensus       102 ~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~-~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l  180 (297)
                      ..+|++|.+.+++++++.+.+.++...|.+|+|+|+++.+ +.....+.+.+...++.|...+..+|....+|.++.+|+
T Consensus        69 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~l  148 (514)
T 3mad_A           69 ARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMT  148 (514)
T ss_dssp             SSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHH
Confidence            5789999999999999999988888889999999998765 456678889999999999999999999999999999999


Q ss_pred             HHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhc
Q psy1678         181 GKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLG  260 (297)
Q Consensus       181 ~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~l  260 (297)
                      ++++|++.+.     ...+|+||+|||++|..+++++|+....+.   |        ..+..|+++..+|+++.+++..+
T Consensus       149 a~~~g~~~~~-----~~v~~~~t~ggt~a~~~al~a~~~~g~~~~---g--------~~~d~Vi~~~~~~~~~~~~~~~~  212 (514)
T 3mad_A          149 AHMLGGDAAG-----GTVCGTVTSGGTESLLLAMKTYRDWARATK---G--------ITAPEAVVPVSAHAAFDKAAQYF  212 (514)
T ss_dssp             HHHTTGGGGT-----SCCEEEEESSHHHHHHHHHHHHHHHHHHHH---C--------CSSCEEEEETTSCTHHHHHHHHH
T ss_pred             HHHcCCCCcc-----CCcceEEcCcHHHHHHHHHHHHHHHhhhhc---C--------CCCCeEEEeCccchHHHHHHHHc
Confidence            9999998310     014689999999999999999988754321   2        23457889999999999999999


Q ss_pred             CCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         261 GVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       261 g~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      |++++.||+|++|+||+++|+++|++
T Consensus       213 G~~v~~v~~~~~~~~d~~~Le~~i~~  238 (514)
T 3mad_A          213 GIKLVRTPLDADYRADVAAMREAITP  238 (514)
T ss_dssp             TCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred             CCeeEEeeeCCCCCCCHHHHHHHhcc
Confidence            99999999999999999999999864

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.59  E-value=7.4e-14  Score=128.80  Aligned_cols=166  Identities=14%  Similarity=0.059  Sum_probs=132.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHH
Q psy1678         103 TAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGK  182 (297)
Q Consensus       103 ~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~  182 (297)
                      .+|+.|.+.+++++.+.+.. +....|.+|+|+|+..+++.+ . +.+.+...+..+...+...|....++.++.+|+++
T Consensus         4 ~lp~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~-~-v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~   80 (397)
T 3f9t_A            4 NMQEKGVSEKEILEELKKYR-SLDLKYEDGNIFGSMCSNVLP-I-TRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGS   80 (397)
T ss_dssp             SCCSSCCCHHHHHHHHHHHH-TTSCCGGGTCBCSCSCCCCCT-H-HHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCeEEEecCCCcH-H-HHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHH
Confidence            57999999999999999875 455568889999999876654 3 35566666665544555667788999999999999


Q ss_pred             HcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCC
Q psy1678         183 MLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGV  262 (297)
Q Consensus       183 llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~  262 (297)
                      ++|.+..         ..+||+|||++|..++.+++.....+.. .+.     +..+.-.|+++..+|+++.+++..+|+
T Consensus        81 ~~~~~~~---------~i~~~~ggt~a~~~~~~~~~~~~~~~~~-~~~-----~~~~gd~vl~~~~~~~~~~~~~~~~g~  145 (397)
T 3f9t_A           81 LLNNKDA---------YGHIVSGGTEANLMALRCIKNIWREKRR-KGL-----SKNEHPKIIVPITAHFSFEKGREMMDL  145 (397)
T ss_dssp             HTTCTTC---------EEEEESCHHHHHHHHHHHHHHHHHHHHH-TTC-----CCCSSCEEEEETTCCTHHHHHHHHHTC
T ss_pred             HhCCCCC---------CEEEecCcHHHHHHHHHHHHHHHHhhhh-hcc-----cCCCCeEEEECCcchhHHHHHHHHcCc
Confidence            9999763         5899999999999999999876433211 111     012344788899999999999999999


Q ss_pred             ceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         263 TIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       263 ~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +++.||+|+++++|+++|+++|++
T Consensus       146 ~~~~v~~~~~~~~d~~~l~~~i~~  169 (397)
T 3f9t_A          146 EYIYAPIKEDYTIDEKFVKDAVED  169 (397)
T ss_dssp             EEEEECBCTTSSBCHHHHHHHHHH
T ss_pred             eeEEEeeCCCCcCCHHHHHHHHhh
Confidence            999999999999999999999976

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.54  E-value=4.6e-14  Score=134.89  Aligned_cols=184  Identities=14%  Similarity=0.078  Sum_probs=127.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccC
Q psy1678          59 GDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYF  138 (297)
Q Consensus        59 ~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~  138 (297)
                      +-+..|.+.++++++...+++++.-              .  ...+|++|.+.+++.+.+.+.......     .|+.+.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~~lp~~g~~~~~i~~~~~~~~~~~~~-----~yld~a   87 (456)
T 2z67_A           29 LIPKNMEKRGELVLNEYLKEIEDVF--------------N--HRKIPENGIDDEKIKLFLKFLSMMDTD-----KDPKSV   87 (456)
T ss_dssp             SSCHHHHHHHHHHHHHHTHHHHHHH--------------H--HCSCCSSCCCHHHHHHHHHHHHTTBGG-----GCTTCE
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhh--------------c--cCCCCCCCCCHHHHHHHHHHHHhcccc-----cccccc
Confidence            4467888888888887777666521              1  146788999999988887776443221     244333


Q ss_pred             CCCCCHHHHHHHHHH--------------HhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcC
Q psy1678         139 PTANSYPAIVADILS--------------DSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQG  204 (297)
Q Consensus       139 ~s~~~~~svl~d~l~--------------~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~ts  204 (297)
                      ..++.+..++..+..              ..+..|. .|..+|.+..+|.++.+|+++++|++.         . ++||+
T Consensus        88 a~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~g~~~---------~-~~~t~  156 (456)
T 2z67_A           88 RIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQP-KASGASIMYALTNKILESFFKQLGLNV---------H-AIATP  156 (456)
T ss_dssp             ECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCT-TBHHHHHHHHHHHHHHHHHHHHTTCCC---------E-EEEES
T ss_pred             ccccccccccccccCccccccCCCccHHHHHHhhCc-ccccCcHHHHHHHHHHHHHHHHcCCCC---------C-EEEeC
Confidence            222222221111111              1122333 566777889999999999999999975         2 99999


Q ss_pred             Chh-HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeC---CCCCCcCHHHH
Q psy1678         205 TAS-EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPA---DDSYKLRGDAL  280 (297)
Q Consensus       205 GGT-~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~---d~~~~md~~~L  280 (297)
                      ||| ++|+.++.++|.+.       +         .+ .|+++..+|+|+.++++..|+.++.||+   |++|++|+++|
T Consensus       157 g~te~a~~~al~~~~~~~-------~---------~~-~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l  219 (456)
T 2z67_A          157 ISTGMSISLCLSAARKKY-------G---------SN-VVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDI  219 (456)
T ss_dssp             SCHHHHHHHHHHHHHHHH-------C---------CC-EEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHH
T ss_pred             cHHHHHHHHHHHHHHHhc-------C---------CC-EEEEECCCcHHHHHHHHHcCCCceEEEEeccCCCCCcCHHHH
Confidence            999 67887888876531       1         12 3555667999999999999999998887   78899999999


Q ss_pred             HHHHHHHHHCC
Q psy1678         281 EAAIEEDLKKG  291 (297)
Q Consensus       281 ~~~i~~~~~~G  291 (297)
                      +++|+++..++
T Consensus       220 ~~~i~~~~~~~  230 (456)
T 2z67_A          220 ENAIKKEIELG  230 (456)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHhhCC
Confidence            99995444344

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.48  E-value=9.3e-13  Score=126.40  Aligned_cols=171  Identities=13%  Similarity=0.056  Sum_probs=124.8

Q ss_pred             hhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccc-cCchhhH
Q psy1678          93 PGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWI-ASPACTE  171 (297)
Q Consensus        93 p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~-~~p~~~~  171 (297)
                      |+.++...+..+|  +.+..++++++.+....+...+.+..++|. +.+...+.++..++..+.+.|..... .++...+
T Consensus        31 p~~~~~~~~~~lp--~~~e~~~~~~~~~l~~~~~~~~~~~~~lg~-~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~  107 (474)
T 1wyu_B           31 PKEHLREVPPRLP--EVDELTLVRHYTGLSRRQVGVDTTFYPLGS-CTMKYNPKLHEEAARLFADLHPYQDPRTAQGALR  107 (474)
T ss_dssp             CGGGBCSSCCCCC--CCCHHHHHHHHHHHHTTCCCTTTSCCCBTT-TCCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHH
T ss_pred             CHHHhccCCCCCC--CCCHHHHHHHHHHHHhCCCCcccCcccccc-ccccCCHHHHHHHHHHHHhcCCCCchhhChHHHH
Confidence            3445433345688  789999999999987665544455667773 32333344554554443333333333 5788889


Q ss_pred             HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc
Q psy1678         172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS  251 (297)
Q Consensus       172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~  251 (297)
                      ++.++.+|+++++|++.          ..++|+|||++|+.|++++|.....+    |. .     .++..|++++.+|.
T Consensus       108 l~~~l~~~la~~~g~~~----------~~~~~~ggt~a~~~al~~~~~~~~~~----Gd-~-----~~r~~Vlv~~~~h~  167 (474)
T 1wyu_B          108 LMWELGEYLKALTGMDA----------ITLEPAAGAHGELTGILIIRAYHEDR----GE-G-----RTRRVVLVPDSAHG  167 (474)
T ss_dssp             HHHHHHHHHHHHHTCSE----------EECCCSSHHHHHHHHHHHHHHHHHHT----TC-T-----TTCCEEEEETTSCT
T ss_pred             HHHHHHHHHHHHHCCCc----------eeecChHHHHHHHHHHHHHHHHHHhc----CC-c-----cCCCEEEEeCCcCh
Confidence            99999999999999975          37789999999999999998754321    10 0     13446778999999


Q ss_pred             hHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         252 SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       252 Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +..+++...|++++.||+|++|++|+++|+++|.+
T Consensus       168 ~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~~  202 (474)
T 1wyu_B          168 SNPATASMAGYQVREIPSGPEGEVDLEALKRELGP  202 (474)
T ss_dssp             HHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCST
T ss_pred             hhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhCC
Confidence            99999999999999999999999999999999864

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=98.78  E-value=5.4e-08  Score=88.77  Aligned_cols=100  Identities=14%  Similarity=0.099  Sum_probs=79.5

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      +..+.....+..++.+|+++++|.+++         ..++|+|||+++..++.+.......               +.-.
T Consensus        35 ~~~~~~~~~~~~~~~~~la~~~~~~~~---------~i~~~~g~~~a~~~~~~~~~~~~~~---------------~gd~   90 (382)
T 4hvk_A           35 HSYGFKAREAVQEAREKVAKLVNGGGG---------TVVFTSGATEANNLAIIGYAMRNAR---------------KGKH   90 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTCTTE---------EEEEESSHHHHHHHHHHHHHHHHGG---------------GCCE
T ss_pred             chHHHHHHHHHHHHHHHHHHHcCCCcC---------eEEEECCchHHHHHHHHHhhhhhcC---------------CCCE
Confidence            333345567777899999999999753         4899999999999999886532111               1225


Q ss_pred             EEecCCCcchHHHHHHhc---CCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~l---g~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      |+++...|+++..++.++   |++++.||+|+++.+|+++|+++|++
T Consensus        91 vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  137 (382)
T 4hvk_A           91 ILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD  137 (382)
T ss_dssp             EEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred             EEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc
Confidence            778999999999988774   99999999999999999999998864

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=98.72  E-value=9.1e-08  Score=87.61  Aligned_cols=97  Identities=14%  Similarity=0.130  Sum_probs=77.9

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      ++.......++.+++++++|.+++         ..++|+|||+++..++.+.+.+...               +.-.|++
T Consensus        38 ~~~~~~~~~~l~~~la~~~g~~~~---------~v~~~~g~t~a~~~~~~~l~~~~~~---------------~gd~Vl~   93 (382)
T 4eb5_A           38 GFKAREAVQEAREKVAKLVNGGGG---------TVVFTSGATEANNLAIIGYAMRNAR---------------KGKHILV   93 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTE---------EEEEESSHHHHHHHHHHHHHHHHGG---------------GCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCC---------eEEEcCchHHHHHHHHHHHHhhccC---------------CCCEEEE
Confidence            344566777899999999998743         4899999999999999988643211               1125778


Q ss_pred             cCCCcchHHHHHHh---cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~Si~Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++.+|+++.+++.+   .|++++.||+|++|.+|+++|+++|++
T Consensus        94 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  137 (382)
T 4eb5_A           94 SAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD  137 (382)
T ss_dssp             ETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT
T ss_pred             CCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC
Confidence            89999999888875   588999999999999999999998864

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=98.65  E-value=2.8e-07  Score=87.59  Aligned_cols=156  Identities=11%  Similarity=0.057  Sum_probs=101.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHH-HHHHHHHHH-------hccccccccccCc---h--
Q psy1678         102 ETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYP-AIVADILSD-------SIACIGFTWIASP---A--  168 (297)
Q Consensus       102 ~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~-svl~d~l~~-------~lN~n~~~~~~~p---~--  168 (297)
                      ..+|++|++.+.|--.|.+.-..++..     |.+.+ +.++-+ -+...++..       .....+...+.=|   +  
T Consensus        39 r~~P~~g~~d~~ie~~l~~la~mdsnn-----~~~~~-g~GERE~Rv~s~lv~rrh~~~~HGiGRSGd~~~~QPKAaGss  112 (501)
T 3hl2_A           39 GKCPENGWDESTLELFLHELAIMDSNN-----FLGNC-GVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSS  112 (501)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHTTBGGG-----CSSCC-CCSSCCCCCSCHHHHHHTTTCCSCBSCSSCTTCCCTTBHHHH
T ss_pred             CCCCccCCCHHHHHHHHHHHHhhccCC-----CcccC-CcccchHHHHHHHHHhhccCcccCCCCccccccCCCCccchH
Confidence            478999999888877777765544433     33332 111111 111222221       1222332222222   1  


Q ss_pred             --hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         169 --CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       169 --~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                        ...-|..+++||+.+ |+|..        +..++++|+|-+++..++++-....+              ..+ .|+++
T Consensus       113 ll~~ltn~l~ld~L~~~-G~~~~--------~~~flVnGsTgg~lamilaa~r~~rp--------------g~d-~VIvp  168 (501)
T 3hl2_A          113 LLNKITNSLVLDIIKLA-GVHTV--------ANCFVVPMATGMSLTLCFLTLRHKRP--------------KAK-YIIWP  168 (501)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCTTC--------CEEEEESSCHHHHHHHHHHHHHHHCT--------------TCC-EEEEE
T ss_pred             HHHHHHHHHHHHHHHHc-CCCCC--------CcEEEECcHHHHHHHHHHHHcCcccC--------------CCC-EEEEe
Confidence              244588899999999 99974        35888999996666666665322110              012 45569


Q ss_pred             CCCcchHHHHHHhcCCceEEeeC---CCCCCcCHHHHHHHHHHH
Q psy1678         247 DQAHSSVERAGLLGGVTIRGLPA---DDSYKLRGDALEAAIEED  287 (297)
Q Consensus       247 ~~aH~Si~Kaa~~lg~~v~~Vp~---d~~~~md~~~L~~~i~~~  287 (297)
                      ..+|.|+.||+.++|+..+.|+.   ++.+.||+++|+++|++.
T Consensus       169 Rn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~  212 (501)
T 3hl2_A          169 RIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQEL  212 (501)
T ss_dssp             CCCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhc
Confidence            99999999999999999888876   557899999999999986

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=98.65  E-value=1.2e-07  Score=88.33  Aligned_cols=95  Identities=17%  Similarity=0.105  Sum_probs=78.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      .......++.+++++++|.+.+         ..+||+|||+|+..++.+.++...+               +.-.|+++.
T Consensus        65 ~~~~~~~~l~~~la~~~~~~~~---------~v~~~~ggt~a~~~a~~~l~~~~~~---------------~gd~Vl~~~  120 (423)
T 3lvm_A           65 QAEEAVDIARNQIADLVGADPR---------EIVFTSGATESDNLAIKGAANFYQK---------------KGKHIITSK  120 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGG---------GEEEESSHHHHHHHHHHHHHHHHTT---------------TCCEEEEET
T ss_pred             HHHHHHHHHHHHHHHHcCCCCC---------eEEEeCChHHHHHHHHHHHHHhhcc---------------CCCEEEECC
Confidence            4456667889999999999754         5899999999999999987764211               123577889


Q ss_pred             CCcchHHHHHHhc---CCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         248 QAHSSVERAGLLG---GVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       248 ~aH~Si~Kaa~~l---g~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .+|+++..++..+   |++++.||+++++.+|+++|+++|++
T Consensus       121 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  162 (423)
T 3lvm_A          121 TEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRD  162 (423)
T ss_dssp             TSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCT
T ss_pred             ccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCC
Confidence            9999999988666   99999999999999999999998864

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=98.61  E-value=4.3e-07  Score=85.66  Aligned_cols=152  Identities=12%  Similarity=0.117  Sum_probs=96.2

Q ss_pred             ChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCC----CHHHHHHHHH--HHhccc-cccccc
Q psy1678          92 EPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTAN----SYPAIVADIL--SDSIAC-IGFTWI  164 (297)
Q Consensus        92 ~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~----~~~svl~d~l--~~~lN~-n~~~~~  164 (297)
                      -|+.++.. +..+| +|.+..++++++.....++..     +|..+...+.    .+ .++.+++  ...+.. +....+
T Consensus        30 ~p~~~~~~-~~~lp-~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~g~~~~~~p-~~v~~~~~~~~~~~~~~~~~~~  101 (438)
T 1wyu_A           30 LPKEILSP-PIDLP-EPLPEWKVLEELRRLAAQNLP-----AHKAFLGGGVRSHHVP-PVVQALAARGEFLTAYTPYQPE  101 (438)
T ss_dssp             SCGGGSSC-CCCCC-CCCCHHHHHHHHHHHHHTSCC-----CTTCCCCSSCCCCCCC-HHHHHHHTSHHHHHCCSCCSGG
T ss_pred             CcHHHhcC-CCCCC-CCCCHHHHHHHHHHHHhcCcC-----ccccccCCCccCCcCc-HHHHHHHhcchhhhcCCCCcch
Confidence            36666655 77899 889999999999887554321     1222222221    22 2333333  222222 122224


Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      .++...+++.++.+++++++|.+..         .+++|+|||.++..++++.+.   .               ++-.|+
T Consensus       102 ~~~g~~~~~~~~~~~la~~~g~~~~---------~i~~~~g~taa~ea~~~a~~~---~---------------~gd~Vi  154 (438)
T 1wyu_A          102 VSQGVLQATFEYQTMIAELAGLEIA---------NASMYDGATALAEGVLLALRE---T---------------GRMGVL  154 (438)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHTSSEE---------CSCBSSHHHHHHHHHHHHHHH---H---------------TCCEEE
T ss_pred             hhhhHHHHHHHHHHHHHHHhCCCcc---------ceEEeCcHHHHHHHHHHHHhc---C---------------CCCEEE
Confidence            5778888999999999999999753         578999999433322222221   1               122577


Q ss_pred             ecCCCcchHHHHH----HhcCCceEEeeCCCCCCcCHHH
Q psy1678         245 CSDQAHSSVERAG----LLGGVTIRGLPADDSYKLRGDA  279 (297)
Q Consensus       245 ~s~~aH~Si~Kaa----~~lg~~v~~Vp~d~~~~md~~~  279 (297)
                      +++.+|+|...+.    +..|++++.||+ ++|++|+++
T Consensus       155 v~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~  192 (438)
T 1wyu_A          155 VSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPLPE  192 (438)
T ss_dssp             EETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCCCC
T ss_pred             EcCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCccCHHH
Confidence            8999999998655    558999999997 567777655

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=98.58  E-value=2.7e-07  Score=85.18  Aligned_cols=131  Identities=11%  Similarity=0.046  Sum_probs=89.6

Q ss_pred             cccccCCCCCCHHHHHH---HHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHH
Q psy1678         133 KFHAYFPTANSYPAIVA---DILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEA  209 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl~---d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~a  209 (297)
                      .|+++-.+++.++.++.   +.+...+.+....+..+.....+..++.+|+++++|.+++         ..++|+|||++
T Consensus        22 iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~---------~v~~~~g~t~a   92 (400)
T 3vax_A           22 TYLDAAATTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPD---------ELIFTSGATES   92 (400)
T ss_dssp             CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGG---------GEEEESCHHHH
T ss_pred             EEecCCCCCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCC---------cEEEeCCHHHH
Confidence            45555444444444433   3333222221112333344456667799999999999754         58999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhc---CCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         210 TLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLG---GVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       210 nl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~l---g~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +..++.+.+.+....              .+..|+++...|+++..++..+   |.+++.||+++++.+|+++|+++|++
T Consensus        93 l~~~~~~l~~~~~~~--------------gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  158 (400)
T 3vax_A           93 NNIALLGLAPYGERT--------------GRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRP  158 (400)
T ss_dssp             HHHHHHTTHHHHHHH--------------TCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCT
T ss_pred             HHHHHHHHHHhhccC--------------CCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCC
Confidence            999999875432211              1214677889999998877764   88999999999999999999998854

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=98.57  E-value=2.8e-07  Score=83.45  Aligned_cols=107  Identities=18%  Similarity=0.141  Sum_probs=82.7

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +.+.+...+..    +..+.....+..++.+|+++++|.+.+         ..+||+|||++|..++.++++        
T Consensus        30 v~~a~~~~~~~----~~~~~g~~~~~~~~~~~l~~~~g~~~~---------~v~~~~g~t~a~~~~~~~~~~--------   88 (359)
T 1svv_A           30 ILDLMARDNMT----QHAGYGQDSHCAKAARLIGELLERPDA---------DVHFISGGTQTNLIACSLALR--------   88 (359)
T ss_dssp             HHHHHHHHTTC----CCCSTTCSHHHHHHHHHHHHHHTCTTS---------EEEEESCHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHhh----ccccccccHHHHHHHHHHHHHhCCCCc---------cEEEeCCchHHHHHHHHHHhC--------
Confidence            34445555442    223344567888899999999997653         589999999999999988632        


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHH--HHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVER--AGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~K--aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                                 +.-.|++++.+|++..+  .+...|.+++.||.+ ++.+|+++|+++|++.
T Consensus        89 -----------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~  138 (359)
T 1svv_A           89 -----------PWEAVIATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHEN  138 (359)
T ss_dssp             -----------TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHS
T ss_pred             -----------CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHH
Confidence                       12267789999999988  478889999999997 7999999999999764

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=98.57  E-value=5e-07  Score=84.50  Aligned_cols=145  Identities=9%  Similarity=0.031  Sum_probs=90.3

Q ss_pred             cccccCCCCCCHHHHHHHHHHHhcc--cc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHH
Q psy1678         133 KFHAYFPTANSYPAIVADILSDSIA--CI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEA  209 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl~d~l~~~lN--~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~a  209 (297)
                      .|+++-.+++.++.++..+....-+  .+ ...+..++....+..++.+++++++|.+++         ..+||+|||++
T Consensus        20 ~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~---------~v~~~~g~t~a   90 (432)
T 3a9z_A           20 VYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQ---------DIIFTSGGTES   90 (432)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGG---------GEEEESCHHHH
T ss_pred             EEeeCCccCCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcC---------eEEEeCChHHH
Confidence            4665554444444444333222211  11 122333444566778899999999998753         58999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCC--CCcCCCCceEEEecCCCcchHHHHHHh----cCCceEEeeCCC-CCCcCHHHHHH
Q psy1678         210 TLVALLGAKAKTMQRVKEAHPDW--KDSDIIANLVGYCSDQAHSSVERAGLL----GGVTIRGLPADD-SYKLRGDALEA  282 (297)
Q Consensus       210 nl~Al~~AR~~~~~~~~~~~~~~--~~~~~~~~~~i~~s~~aH~Si~Kaa~~----lg~~v~~Vp~d~-~~~md~~~L~~  282 (297)
                      |..++.+..+.........|..+  ..++......|++|..+|+|+.++...    .|.+++.||+++ ++.+|+++|++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~  170 (432)
T 3a9z_A           91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILA  170 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHH
T ss_pred             HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHH
Confidence            99999988532211000011100  111111224788999999999776644    589999999986 89999999999


Q ss_pred             HHHH
Q psy1678         283 AIEE  286 (297)
Q Consensus       283 ~i~~  286 (297)
                      +|++
T Consensus       171 ~i~~  174 (432)
T 3a9z_A          171 AVRP  174 (432)
T ss_dssp             TCCT
T ss_pred             hccC
Confidence            8853

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=98.52  E-value=7.1e-07  Score=81.55  Aligned_cols=94  Identities=14%  Similarity=0.085  Sum_probs=75.2

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ......++.+++++++|.+.+         ..++|+|||+++..++.+.+....               .+.-.|++++.
T Consensus        42 ~~~~~~~l~~~la~~~g~~~~---------~v~~~~g~t~a~~~~~~~~~~~~~---------------~~gd~vl~~~~   97 (384)
T 1eg5_A           42 ANLHMEKAREKVAKVLGVSPS---------EIFFTSCATESINWILKTVAETFE---------------KRKRTIITTPI   97 (384)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGG---------GEEEESCHHHHHHHHHHHHHHHTT---------------TTCCEEEECTT
T ss_pred             HHHHHHHHHHHHHHHcCCCCC---------eEEEECCHHHHHHHHHHhhhhhcc---------------CCCCEEEECCC
Confidence            455667788999999998754         589999999999999998764210               01125778889


Q ss_pred             CcchHHHHH---HhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         249 AHSSVERAG---LLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       249 aH~Si~Kaa---~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +|+++..++   ...|.+++.||+++++.+|+++|+++|++
T Consensus        98 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  138 (384)
T 1eg5_A           98 EHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE  138 (384)
T ss_dssp             SCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT
T ss_pred             CchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC
Confidence            999997776   66799999999999999999999998864

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=98.51  E-value=7.3e-07  Score=82.44  Aligned_cols=128  Identities=11%  Similarity=0.018  Sum_probs=92.1

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678         128 HWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS  207 (297)
Q Consensus       128 ~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT  207 (297)
                      ...+|.++-+.++|.....-+.+.+..   +...  ..+|....+..++.+++++++|.+...        ..++|+|||
T Consensus         8 ~~~~~~~~~~~pgp~~~~~~v~~a~~~---~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~--------~v~~~~sgt   74 (411)
T 3nnk_A            8 QLNPPSRLLMGPGPINADPRVLRAMSS---QLIG--QYDPAMTHYMNEVMALYRGVFRTENRW--------TMLVDGTSR   74 (411)
T ss_dssp             SCCCCCCEEESSSCCCCCHHHHHHHTS---CCCC--TTCHHHHHHHHHHHHHHHHHHTCCCSE--------EEEEESCHH
T ss_pred             ccCCccceeecCCCCCCCHHHHHHhhc---cccc--cccHHHHHHHHHHHHHHHHHhCCCCCc--------EEEECCCcH
Confidence            345676666666664433333333322   2111  224556677788999999999997531        367889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch--HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         208 EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       208 ~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S--i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      +++..++.+..    .               +.-.|+++..+|++  +.+++...|++++.||++.++.+|+++|+++|+
T Consensus        75 ~al~~~~~~~~----~---------------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~  135 (411)
T 3nnk_A           75 AGIEAILVSAI----R---------------PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVK  135 (411)
T ss_dssp             HHHHHHHHHHC----C---------------TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhc----C---------------CCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHh
Confidence            99999888751    1               12256778899988  889999999999999999999999999999998


Q ss_pred             HH
Q psy1678         286 ED  287 (297)
Q Consensus       286 ~~  287 (297)
                      +.
T Consensus       136 ~~  137 (411)
T 3nnk_A          136 RI  137 (411)
T ss_dssp             HH
T ss_pred             hC
Confidence            64

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=98.50  E-value=9.4e-07  Score=81.84  Aligned_cols=126  Identities=12%  Similarity=0.051  Sum_probs=88.3

Q ss_pred             CCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeE-EcCChh
Q psy1678         129 WHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGV-IQGTAS  207 (297)
Q Consensus       129 ~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~-~tsGGT  207 (297)
                      ..+|+++.+.+++......+.+.+..   . . ....++....+..++.+|+++++|.+..         ..+ +|+|||
T Consensus         7 ~~~~~~~~~~p~p~~~~~~v~~a~~~---~-~-~~~~~~~~~~~~~~l~~~la~~~g~~~~---------~~~~~~~s~t   72 (416)
T 3isl_A            7 LCTPLRTIMTPGPVEVDPRVLRVMST---P-V-VGQFDPAFTGIMNETMEMLRELFQTKNR---------WAYPIDGTSR   72 (416)
T ss_dssp             CCCCCCEECSSSSCCCCHHHHHHTTS---C-C-CCTTSHHHHHHHHHHHHHHHHHTTCCCS---------EEEEEESCHH
T ss_pred             cCcccceeecCCCcCcCHHHHHHhcc---c-C-CCCccHHHHHHHHHHHHHHHHHhCCCCC---------cEEEecCcHH
Confidence            44556655555554333322222222   1 1 1223345567788899999999998753         244 889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch--HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         208 EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       208 ~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S--i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      +++..++.+.    ..               +.-.|+++..+|++  +.+++...|++++.||++.++.+|+++|+++|+
T Consensus        73 ~al~~~~~~l----~~---------------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~  133 (416)
T 3isl_A           73 AGIEAVLASV----IE---------------PEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIK  133 (416)
T ss_dssp             HHHHHHHHHH----CC---------------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHh----cC---------------CCCEEEEecCCcccHHHHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHh
Confidence            9998887764    11               12256677789998  888999999999999999999999999999998


Q ss_pred             HH
Q psy1678         286 ED  287 (297)
Q Consensus       286 ~~  287 (297)
                      +.
T Consensus       134 ~~  135 (416)
T 3isl_A          134 KV  135 (416)
T ss_dssp             HH
T ss_pred             hC
Confidence            53

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=98.47  E-value=1.7e-07  Score=84.62  Aligned_cols=93  Identities=14%  Similarity=0.088  Sum_probs=74.1

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      +|.....+.++.+++++++|.+...       ...++|+|||+++..++.+.++                     -.|++
T Consensus        28 ~~~~~~~~~~l~~~la~~~g~~~~~-------~~v~~t~g~t~a~~~~~~~~~~---------------------d~vl~   79 (353)
T 2yrr_A           28 DPEVLRVNRAIQERLAALFDPGEGA-------LVAALAGSGSLGMEAGLANLDR---------------------GPVLV   79 (353)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCTTC-------EEEEESSCHHHHHHHHHHTCSC---------------------CCEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCC-------ceEEEcCCcHHHHHHHHHHhcC---------------------CcEEE
Confidence            5666677888999999999996110       1489999999999988876421                     13566


Q ss_pred             cCCCcch--HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~S--i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++.+|++  +.+++...|++++.||+|+++.+|+++|+++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  122 (353)
T 2yrr_A           80 LVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKR  122 (353)
T ss_dssp             EECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             EcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHh
Confidence            7788988  4677788999999999999999999999999975

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=98.45  E-value=6.7e-07  Score=81.90  Aligned_cols=93  Identities=9%  Similarity=0.054  Sum_probs=76.9

Q ss_pred             CchhhHHHHHHHHHHHHHcCCC-ccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         166 SPACTELEVVMLDWLGKMLDLP-KEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~-~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ++....+..++.+++++++|.+ ..         ..++|+|||+++..++.+..+                   +.-.|+
T Consensus        48 ~~~~~~~~~~~~~~la~~~g~~~~~---------~v~~~~g~t~a~~~~~~~l~~-------------------~gd~vl   99 (386)
T 2dr1_A           48 SKEYRKVHMDTVERLREFLEVEKGE---------VLLVPSSGTGIMEASIRNGVS-------------------KGGKVL   99 (386)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCSSSE---------EEEESSCHHHHHHHHHHHHSC-------------------TTCEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCc---------EEEEeCChHHHHHHHHHHhhc-------------------CCCeEE
Confidence            3445778888999999999997 22         488999999999999887511                   112567


Q ss_pred             ecCCCcch--HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~S--i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +++.+|++  +.+++...|++++.||++.++.+|+++|+++|++
T Consensus       100 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  143 (386)
T 2dr1_A          100 VTIIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALRK  143 (386)
T ss_dssp             EEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             EEcCCchhHHHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHhc
Confidence            78889998  8899999999999999999999999999999965

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=98.44  E-value=1.2e-06  Score=80.75  Aligned_cols=94  Identities=15%  Similarity=0.045  Sum_probs=77.0

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      +....+..++.+++++++|.+++        ...+||+|||+++..++.+..+                   +.-.|+++
T Consensus        63 ~~~~~~~~~~~~~la~~~g~~~~--------~~v~~t~g~t~al~~~~~~~~~-------------------~gd~Vl~~  115 (393)
T 1vjo_A           63 PAFLALMDEIQSLLRYVWQTENP--------LTIAVSGTGTAAMEATIANAVE-------------------PGDVVLIG  115 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCS--------CEEEESSCHHHHHHHHHHHHCC-------------------TTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCC--------cEEEEeCchHHHHHHHHHhccC-------------------CCCEEEEE
Confidence            44556777899999999999642        1389999999999999988621                   11246677


Q ss_pred             CCCcch--HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         247 DQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       247 ~~aH~S--i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      +.+|++  +.+++...|.+++.||+++++.+|+++|+++|++.
T Consensus       116 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~  158 (393)
T 1vjo_A          116 VAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETH  158 (393)
T ss_dssp             ESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH
T ss_pred             cCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhhC
Confidence            889999  99999999999999999999999999999999763

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=98.38  E-value=2e-06  Score=79.06  Aligned_cols=122  Identities=12%  Similarity=0.054  Sum_probs=84.9

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHH
Q psy1678         131 SPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEAT  210 (297)
Q Consensus       131 ~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~an  210 (297)
                      ++.|+.+-.+++.++.++ +.+...+..     ..++.......++.+++++++|.+++         ..++|+|||+++
T Consensus         8 ~~~yl~~~~~~~~~~~v~-~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g~~~~---------~v~~t~g~t~a~   72 (392)
T 2z9v_A            8 DPVITLTAGPVNAYPEVL-RGLGRTVLY-----DYDPAFQLLYEKVVDKAQKAMRLSNK---------PVILHGEPVLGL   72 (392)
T ss_dssp             CCSEECSSSCCCCCHHHH-HHTTSCCCC-----TTSHHHHHHHHHHHHHHHHHTTCSSC---------CEEESSCTHHHH
T ss_pred             CcceeecCCCcCCCHHHH-HHHhccccc-----cccHHHHHHHHHHHHHHHHHhCCCCC---------EEEEeCCchHHH
Confidence            445666554444444443 333333322     12344556667789999999998643         589999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH--HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         211 LVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       211 l~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si--~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ..++.+..    .               +.-.|+++..+|++.  .+.+...|.+++.||+|+++.+|+++|+++|++
T Consensus        73 ~~~~~~~~----~---------------~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  131 (392)
T 2z9v_A           73 EAAAASLI----S---------------PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKA  131 (392)
T ss_dssp             HHHHHHHC----C---------------TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHhc----C---------------CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhc
Confidence            99988761    1               111466778899886  344455799999999999999999999999975

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=98.37  E-value=1.3e-06  Score=80.12  Aligned_cols=126  Identities=9%  Similarity=-0.043  Sum_probs=86.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHH
Q psy1678         130 HSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEA  209 (297)
Q Consensus       130 ~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~a  209 (297)
                      ..|+++.+.+++...+..+.+.+..   +...  ...|....+..++.+++++++|.+...        ..+||+|||++
T Consensus        20 ~~~~~~~~~p~p~~~~~~v~~a~~~---~~~~--~~~~~~~~~~~~l~~~la~~~~~~~~~--------~v~~~~gg~~a   86 (393)
T 3kgw_A           20 SVPTRLLLGPGPSNLAPRVLAAGSL---RMIG--HMQKEMLQIMEEIKQGIQYVFQTRNPL--------TLVVSGSGHCA   86 (393)
T ss_dssp             CCCCCEECSSSCCCCCHHHHHHTTC---CCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSE--------EEEESCCTTTH
T ss_pred             CCccceeccCCCCCCCHHHHHHhcc---cccC--cccHHHHHHHHHHHHHHHHHhCCCCCc--------EEEEeCCcHHH
Confidence            3456666666654333223333322   1111  123455667778899999999987531        37899999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc--hHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         210 TLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS--SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       210 nl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~--Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      +..++.+..+                   +.-.|+++..+||  .+.+++...|.+++.+|++.++.+|+++|+++|++.
T Consensus        87 l~~~~~~~~~-------------------~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~  147 (393)
T 3kgw_A           87 METALFNLLE-------------------PGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQH  147 (393)
T ss_dssp             HHHHHHHHCC-------------------TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHhcCC-------------------CCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhC
Confidence            9988886511                   1123555667776  447888889999999999999999999999999863

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=98.34  E-value=1.2e-06  Score=80.09  Aligned_cols=130  Identities=8%  Similarity=-0.063  Sum_probs=82.9

Q ss_pred             ccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHH
Q psy1678         132 PKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATL  211 (297)
Q Consensus       132 p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl  211 (297)
                      |+.+.+.+++......+.+.+...+..    + .+|.......++.++++++++.....     .....+||+|||++|.
T Consensus         4 ~~~~~~~p~p~~~~~~v~~a~~~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~v~~~~g~t~al~   73 (385)
T 2bkw_A            4 SVDTLLIPGPIILSGAVQKALDVPSLG----H-TSPEFVSIFQRVLKNTRAVFKSAAAS-----KSQPFVLAGSGTLGWD   73 (385)
T ss_dssp             CCCEECSSSSCCCCHHHHHTTSCCCCC----T-TSHHHHHHHHHHHHHHHHHTTCCGGG-----TCEEEEEESCTTHHHH
T ss_pred             ccceeecCCCcCchHHHHHHHhccccc----c-CCHHHHHHHHHHHHHHHHHhCCCCCC-----CCceEEEcCchHHHHH
Confidence            344555555543333333333332221    1 25555555666888999999875210     0125899999999999


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe-cCCCcchHHHHHHhcCCceEEeeC-CCCCCcCHHHHHHHHHH
Q psy1678         212 VALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC-SDQAHSSVERAGLLGGVTIRGLPA-DDSYKLRGDALEAAIEE  286 (297)
Q Consensus       212 ~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~-s~~aH~Si~Kaa~~lg~~v~~Vp~-d~~~~md~~~L~~~i~~  286 (297)
                      .++.+.... ..              ..+-+++. +..-|.++.+++...|++++.||+ ++++.+|+++|+++|++
T Consensus        74 ~~~~~~~~~-~~--------------~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~  135 (385)
T 2bkw_A           74 IFASNFILS-KA--------------PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ  135 (385)
T ss_dssp             HHHHHHSCT-TC--------------SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHhcc-CC--------------CCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc
Confidence            998875210 00              11223333 445566666788889999999999 88999999999999975

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=98.31  E-value=1.3e-06  Score=79.69  Aligned_cols=87  Identities=18%  Similarity=0.161  Sum_probs=73.0

Q ss_pred             HHHHHHHH-HHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678         172 LEVVMLDW-LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH  250 (297)
Q Consensus       172 iE~~v~~~-l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH  250 (297)
                      ...++.++ +++++|.+ .          .+||+|||+++..++.+...                   +.-.|++++.+|
T Consensus        54 ~~~~l~~~~la~~~~~~-~----------v~~~~g~t~a~~~~~~~~~~-------------------~gd~vl~~~~~~  103 (371)
T 2e7j_A           54 PIHDFIHNQLPKFLGCD-V----------ARVTNGAREAKFAVMHSLAK-------------------KDAWVVMDENCH  103 (371)
T ss_dssp             CHHHHHHTHHHHHTTSS-E----------EEEESSHHHHHHHHHHHHCC-------------------TTCEEEEETTCC
T ss_pred             HHHHHHHHHHHHHcCCC-E----------EEEeCChHHHHHHHHHHHhC-------------------CCCEEEEccCcc
Confidence            44457778 99999986 3          89999999999999988621                   122577899999


Q ss_pred             chHHHHHHhcCCceEEee--CCCCCCcCHHHHHHHHHHHH
Q psy1678         251 SSVERAGLLGGVTIRGLP--ADDSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       251 ~Si~Kaa~~lg~~v~~Vp--~d~~~~md~~~L~~~i~~~~  288 (297)
                      ++...++...|++++.||  +|+++.+|+++|+++|++..
T Consensus       104 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~  143 (371)
T 2e7j_A          104 YSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETK  143 (371)
T ss_dssp             HHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHT
T ss_pred             hHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhc
Confidence            999999999999999999  88889999999999998653

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=98.31  E-value=2.5e-06  Score=78.46  Aligned_cols=94  Identities=10%  Similarity=0.007  Sum_probs=72.9

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      +|.......++.+++++++|.+..        ...++|+|||++|..++.+..+                   +.-.|++
T Consensus        47 ~~~~~~~~~~l~~~la~~~g~~~~--------~~i~~~~g~t~a~~~~~~~~~~-------------------~gd~vl~   99 (393)
T 2huf_A           47 HPETLKIMDDIKEGVRYLFQTNNI--------ATFCLSASGHGGMEATLCNLLE-------------------DGDVILI   99 (393)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCCS--------EEEEESSCHHHHHHHHHHHHCC-------------------TTCEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCC--------cEEEEcCcHHHHHHHHHHHHhC-------------------CCCEEEE
Confidence            444556777899999999998642        1478999999999999887511                   1124667


Q ss_pred             cCCCcchH--HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~Si--~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +..+|++.  .+.+...|.+++.||+++++.+|+++|+++|++
T Consensus       100 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  142 (393)
T 2huf_A          100 GHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLI  142 (393)
T ss_dssp             EESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhc
Confidence            77889884  345566899999999999999999999999975

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=98.30  E-value=1.7e-06  Score=78.92  Aligned_cols=94  Identities=14%  Similarity=0.057  Sum_probs=74.1

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      ++....+..++.+++++++|.+...       ...+||+|||+++. ++.+.    +               .+.-.|++
T Consensus        30 ~~~~~~~~~~~~~~la~~~~~~~~~-------~~v~~~~g~t~al~-~~~~~----~---------------~~gd~vi~   82 (384)
T 3zrp_A           30 SKEFVEALAYSLKGLRYVMGASKNY-------QPLIIPGGGTSAME-SVTSL----L---------------KPNDKILV   82 (384)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCTTS-------EEEEEESCHHHHHH-HGGGG----C---------------CTTCEEEE
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCC-------cEEEEcCCcHHHHH-HHHhh----c---------------CCCCEEEE
Confidence            4555677788999999999997510       14899999999998 77543    1               01225667


Q ss_pred             cCCCcch--HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~S--i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++.+|++  +...+...|.+++.||++.++.+|+++|+++|++
T Consensus        83 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  125 (384)
T 3zrp_A           83 VSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRK  125 (384)
T ss_dssp             ECSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHH
T ss_pred             ecCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHh
Confidence            7889977  6677788899999999999999999999999976

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=98.30  E-value=5.7e-06  Score=76.51  Aligned_cols=93  Identities=13%  Similarity=0.077  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHHcCC-CccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         170 TELEVVMLDWLGKMLDL-PKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~-~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      .....++.+++++++|. ++.         ..++|+|||+++..++.+.+....               .+.-.|+++..
T Consensus        71 ~~~~~~l~~~la~~~~~~~~~---------~v~~~~g~t~a~~~~~~~~~~~~~---------------~~gd~Vl~~~~  126 (420)
T 1t3i_A           71 TDAYEAVRNKVAKFINARSPR---------EIVYTRNATEAINLVAYSWGMNNL---------------KAGDEIITTVM  126 (420)
T ss_dssp             HHHHHHHHHHHHHHTTCSCGG---------GEEEESSHHHHHHHHHHHTHHHHC---------------CTTCEEEEETT
T ss_pred             HHHHHHHHHHHHHHcCCCCCC---------eEEEcCChHHHHHHHHHHhhhccc---------------CCCCEEEECcc
Confidence            44555688899999998 433         589999999999999998753211               11225778889


Q ss_pred             Ccch----HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         249 AHSS----VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       249 aH~S----i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +|++    +.+++...|++++.||+++++.+|+++|+++|++
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  168 (420)
T 1t3i_A          127 EHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE  168 (420)
T ss_dssp             CCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT
T ss_pred             hhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC
Confidence            9998    6778888999999999999999999999998854

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=98.30  E-value=2.9e-06  Score=78.10  Aligned_cols=95  Identities=12%  Similarity=-0.002  Sum_probs=74.4

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      +|.......++.+++++++|.+.+        ...++|+|||+++..++.+..+                   +.-.|++
T Consensus        46 ~~~~~~~~~~l~~~la~~~~~~~~--------~~v~~~~g~t~al~~~~~~~~~-------------------~gd~vl~   98 (396)
T 2ch1_A           46 HAELFRTMDEVKDGLRYIFQTENR--------ATMCVSGSAHAGMEAMLSNLLE-------------------EGDRVLI   98 (396)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCCS--------CEEEESSCHHHHHHHHHHHHCC-------------------TTCEEEE
T ss_pred             ChhHHHHHHHHHHHHHHHhCCCCC--------cEEEECCcHHHHHHHHHHHhcC-------------------CCCeEEE
Confidence            454445667789999999998752        1378999999999998887511                   1114667


Q ss_pred             cCCCcchHH--HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         246 SDQAHSSVE--RAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       246 s~~aH~Si~--Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      ++.+|++..  +++...|.+++.||++.++.+|+++|+++|++.
T Consensus        99 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~  142 (396)
T 2ch1_A           99 AVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELH  142 (396)
T ss_dssp             EESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHH
T ss_pred             EcCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhC
Confidence            778898874  578889999999999999999999999999763

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=98.22  E-value=8.6e-06  Score=75.32  Aligned_cols=101  Identities=22%  Similarity=0.087  Sum_probs=78.7

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |...+...++++.+.+|+.+..|++.+.       ...++|+|||+++..++.+.++                   +.-.
T Consensus        71 y~~~~~~~~l~~~la~~~~~~~g~~~~~-------~~v~~t~g~t~a~~~~~~~~~~-------------------~gd~  124 (407)
T 2zc0_A           71 YTPANGIPELREELAAFLKKYDHLEVSP-------ENIVITIGGTGALDLLGRVLID-------------------PGDV  124 (407)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHSCCCCCG-------GGEEEESHHHHHHHHHHHHHCC-------------------TTCE
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCCc-------ceEEEecCHHHHHHHHHHHhcC-------------------CCCE
Confidence            4333456889999999999888964211       2589999999999999888631                   1114


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHC
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKK  290 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~  290 (297)
                      |++...+|+++..++...|.+++.||+++++ +|+++|+++|++...+
T Consensus       125 vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~  171 (407)
T 2zc0_A          125 VITENPSYINTLLAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAK  171 (407)
T ss_dssp             EEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHT
T ss_pred             EEEeCCChHHHHHHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhcc
Confidence            6678889999999999999999999998776 9999999999855444

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=98.20  E-value=4.7e-06  Score=75.39  Aligned_cols=118  Identities=14%  Similarity=0.046  Sum_probs=80.8

Q ss_pred             cccCCCCC-CHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHH
Q psy1678         135 HAYFPTAN-SYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVA  213 (297)
Q Consensus       135 ~g~~~s~~-~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~A  213 (297)
                      +.+.+++. .++.++..+...+.+........+|....+..++.+++++++|.++.        ...++|+|||+++..+
T Consensus         6 ~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--------~~v~~~~g~t~al~~~   77 (362)
T 3ffr_A            6 IYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSN--------YEVLFLASATEIWERI   77 (362)
T ss_dssp             EEECSSSCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTT--------EEEEEESCHHHHHHHH
T ss_pred             eeccCCCcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCC--------cEEEEeCCchHHHHHH
Confidence            33444443 33344444444444433222335677778888999999999999642        1588999999999988


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch--HHHHHHhcCCceEEeeCCCCCCcCHHHHH
Q psy1678         214 LLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALE  281 (297)
Q Consensus       214 l~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S--i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~  281 (297)
                      +.+..                   .+  .+++....||+  +...+...|++++.||++.++.+|+++|+
T Consensus        78 ~~~l~-------------------~~--~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~  126 (362)
T 3ffr_A           78 IQNCV-------------------EK--KSFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT  126 (362)
T ss_dssp             HHHHC-------------------SS--EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC
T ss_pred             HHhcc-------------------CC--cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh
Confidence            87641                   12  34445567777  34566778999999999999999999987

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=98.18  E-value=7.7e-06  Score=75.16  Aligned_cols=112  Identities=11%  Similarity=0.001  Sum_probs=83.7

Q ss_pred             HHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhh
Q psy1678         149 ADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEA  228 (297)
Q Consensus       149 ~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~  228 (297)
                      .+.+...++.....|...+....+++.+.+|+.+.+|.+-+.       ...++|+|||+++..++.+..+         
T Consensus        49 ~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~-------~~v~~~~g~~~a~~~~~~~~~~---------  112 (388)
T 1j32_A           49 VEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA-------DNILVTNGGKQSIFNLMLAMIE---------  112 (388)
T ss_dssp             HHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-------GGEEEESHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh-------hhEEEcCCHHHHHHHHHHHhcC---------
Confidence            344444443322334444557889999999999999874211       2589999999999999887621         


Q ss_pred             CCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         229 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       229 ~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                                +.-.|+++..+|+++..++...|.+++.||+++  ++.+|+++|+++|++
T Consensus       113 ----------~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  162 (388)
T 1j32_A          113 ----------PGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP  162 (388)
T ss_dssp             ----------TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT
T ss_pred             ----------CCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc
Confidence                      112577788999999999999999999999985  678999999998863

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=98.15  E-value=3.6e-05  Score=70.74  Aligned_cols=117  Identities=12%  Similarity=-0.033  Sum_probs=79.1

Q ss_pred             HHHHHHHHHH-hcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCC--CeEEcCChhHHHHHHHHHHHHH
Q psy1678         145 PAIVADILSD-SIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKG--GGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       145 ~svl~d~l~~-~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~--~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      +.+ .+.+.. .+... ...|...+....+.+.+.+|+....+.+-+       ..  .-++|+|||+++..++...+..
T Consensus        47 ~~v-~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~-------~~~~~i~~t~g~~~a~~~~~~~~~~~  118 (397)
T 3fsl_A           47 QAV-AEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLK-------QQRVATIQTLGGSGALKVGADFLKRY  118 (397)
T ss_dssp             HHH-HHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-------TTCEEEEEESHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCccccc-------ccceEEEEcCCcHHHHHHHHHHHHhc
Confidence            444 444444 44432 233444455567777777777655442101       01  3789999999999887543221


Q ss_pred             HHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeC--CCCCCcCHHHHHHHHHH
Q psy1678         221 TMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPA--DDSYKLRGDALEAAIEE  286 (297)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~--d~~~~md~~~L~~~i~~  286 (297)
                        .               +.-.|+++.-+|.+...++...|.+++.||+  ++++.+|+++|++.|++
T Consensus       119 --~---------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  169 (397)
T 3fsl_A          119 --F---------------PESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKT  169 (397)
T ss_dssp             --C---------------TTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTT
T ss_pred             --C---------------CCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHh
Confidence              0               1114667889999999999999999999999  56899999999999874

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=98.15  E-value=4.5e-06  Score=77.13  Aligned_cols=93  Identities=10%  Similarity=0.005  Sum_probs=70.5

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ......++.+++++++|.++.         ..+||+|||+++..++.+.+.. .               .+.-.|+++..
T Consensus        67 ~~~~~~~l~~~la~~~g~~~~---------~v~~~~g~t~al~~~~~~l~~~-~---------------~~gd~vi~~~~  121 (406)
T 3cai_A           67 SAAVLDAAREAVADLVNADPG---------GVVLGADRAVLLSLLAEASSSR-A---------------GLGYEVIVSRL  121 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGG---------GEEEESCHHHHHHHHHHHTGGG-G---------------BTTCEEEEETT
T ss_pred             HHHHHHHHHHHHHHHhCCCCC---------eEEEeCChHHHHHHHHHHHhhc-c---------------CCCCEEEEcCC
Confidence            455666788999999999753         5899999999988776643110 1               01125778889


Q ss_pred             CcchHHHHHHh----cCCceEEeeCC-CCCCcCHHHHHHHHHH
Q psy1678         249 AHSSVERAGLL----GGVTIRGLPAD-DSYKLRGDALEAAIEE  286 (297)
Q Consensus       249 aH~Si~Kaa~~----lg~~v~~Vp~d-~~~~md~~~L~~~i~~  286 (297)
                      +|.+...+...    .|.+++.||++ ++|.+|+++|+++|++
T Consensus       122 ~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~  164 (406)
T 3cai_A          122 DDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK  164 (406)
T ss_dssp             SCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT
T ss_pred             ccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC
Confidence            99987776654    69999999999 7899999999998853

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=98.15  E-value=1.4e-05  Score=73.35  Aligned_cols=112  Identities=13%  Similarity=0.145  Sum_probs=83.4

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCC-CeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKG-GGVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~-~G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      +.+.+...+......|...+....+++.+.+|+.+.+|.+-+       .. ..++|+|||+++..++.+..    .   
T Consensus        48 v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~-------~~~~v~~~~g~~~a~~~~~~~~~----~---  113 (386)
T 1u08_A           48 LQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPD-------ADSDITVTAGATEALYAAITALV----R---  113 (386)
T ss_dssp             HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCC-------TTTTEEEESSHHHHHHHHHHHHC----C---
T ss_pred             HHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCC-------CCCCEEEcCChHHHHHHHHHHhC----C---
Confidence            445555544432233444445688999999999999987521       12 58999999999998887741    0   


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE  285 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~  285 (297)
                                  +.-.|++++.+|+++..++...|.+++.||+++ ++.+|+++|+++|+
T Consensus       114 ------------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~  161 (386)
T 1u08_A          114 ------------NGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLS  161 (386)
T ss_dssp             ------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC
T ss_pred             ------------CCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhc
Confidence                        112466778899999999999999999999986 68999999999884

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=98.14  E-value=1e-05  Score=74.30  Aligned_cols=93  Identities=15%  Similarity=0.034  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHHHcCC-CccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         170 TELEVVMLDWLGKMLDL-PKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~-~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      .....++.+++++++|. ++.         ..+||+|||+++..++.+.+....               .+.-.|+++..
T Consensus        66 ~~~~~~l~~~la~~~~~~~~~---------~v~~~~g~t~a~~~~~~~~~~~~~---------------~~gd~vl~~~~  121 (406)
T 1kmj_A           66 TEKMENVRKRASLFINARSAE---------ELVFVRGTTEGINLVANSWGNSNV---------------RAGDNIIISQM  121 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCSCGG---------GEEEESSHHHHHHHHHHHTHHHHC---------------CTTCEEEEETT
T ss_pred             HHHHHHHHHHHHHHcCCCCCC---------eEEEeCChhHHHHHHHHHhhhhcC---------------CCCCEEEEecc
Confidence            44556788899999998 332         589999999999999998864211               01225677888


Q ss_pred             CcchHH----HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         249 AHSSVE----RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       249 aH~Si~----Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +|++..    ..+...|.+++.||+++++.+|+++|+++|++
T Consensus       122 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~  163 (406)
T 1kmj_A          122 EHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE  163 (406)
T ss_dssp             CCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT
T ss_pred             cchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhcc
Confidence            887653    45677899999999999999999999998853

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=98.14  E-value=6.9e-06  Score=75.78  Aligned_cols=95  Identities=13%  Similarity=0.087  Sum_probs=70.9

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..+...++|+    .+++++|.+.           .+||++||+||..++.+++.+..       .     +..+.-.|+
T Consensus        32 ~~~~~~~l~~----~la~~~~~~~-----------~i~~~sGt~a~~~al~~~~~~~~-------~-----~~~~g~~Vi   84 (390)
T 3b8x_A           32 MGEYVKQYET----QFAKTFGSKY-----------AVMVSSGSTANLLMIAALFFTKK-------P-----RLKKGDEII   84 (390)
T ss_dssp             SCHHHHHHHH----HHHHHHTCSE-----------EEEESCHHHHHHHHHHHTTSSSS-------C-----SCCTTCEEE
T ss_pred             CChHHHHHHH----HHHHHHCCCc-----------EEEECCHHHHHHHHHHHHHhhhh-------c-----CCCCcCEEE
Confidence            3445555554    5666777752           79999999999999988642100       0     001223577


Q ss_pred             ecCCCcchHHHHHHhcCCceEEeeCCCC-CCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~-~~md~~~L~~~i~~  286 (297)
                      ++..+|.++..++...|.+++.+|+|++ +.+|+++|+++|++
T Consensus        85 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~  127 (390)
T 3b8x_A           85 VPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD  127 (390)
T ss_dssp             EESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT
T ss_pred             ECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCc
Confidence            8999999999999999999999999975 99999999998864

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=98.14  E-value=5.9e-06  Score=76.27  Aligned_cols=99  Identities=11%  Similarity=0.022  Sum_probs=78.2

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |...+....+...+.+|+++.+|.+-+.      ....+||+|||++|..++.+...                   +.-.
T Consensus        74 y~~~~g~~~l~~~l~~~l~~~~g~~~~~------~~~i~~~~g~~~a~~~~~~~l~~-------------------~gd~  128 (407)
T 3nra_A           74 YTEYRGDLGIRDLLAPRLAAFTGAPVDA------RDGLIITPGTQGALFLAVAATVA-------------------RGDK  128 (407)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHTSCCCT------TTSEEEESHHHHHHHHHHHTTCC-------------------TTCE
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhCCCCCC------CCcEEEeCCcHHHHHHHHHHhCC-------------------CCCE
Confidence            4444556788889999999999985210      02589999999999988875310                   1125


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEeeC------CCCCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGLPA------DDSYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~------d~~~~md~~~L~~~i~~  286 (297)
                      |+++..+|.++..++...|.+++.+|+      ++++.+|+++|+++|++
T Consensus       129 vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  178 (407)
T 3nra_A          129 VAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA  178 (407)
T ss_dssp             EEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT
T ss_pred             EEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh
Confidence            777889999999999999999999999      47899999999999975

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=98.12  E-value=7.6e-06  Score=75.22  Aligned_cols=113  Identities=15%  Similarity=0.100  Sum_probs=82.9

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCC-eEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGG-GVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~-G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      +.+.+...+......|...+....+++.+.+|+.+.+|.+-+       ... .++|+|||+++..++.+..+       
T Consensus        44 v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~-------~~~~v~~~~g~~~a~~~~~~~~~~-------  109 (389)
T 1gd9_A           44 IKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEAD-------PKTEIMVLLGANQAFLMGLSAFLK-------  109 (389)
T ss_dssp             HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC-------TTTSEEEESSTTHHHHHHHTTTCC-------
T ss_pred             HHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCC-------CCCeEEEcCChHHHHHHHHHHhCC-------
Confidence            344444444332223444445788999999999999896421       026 89999999999988876410       


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                                  +.-.|++++.+|+++..++...|.+++.||+++  .+.+|+++|+++|++
T Consensus       110 ------------~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  159 (389)
T 1gd9_A          110 ------------DGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD  159 (389)
T ss_dssp             ------------TTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT
T ss_pred             ------------CCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcCc
Confidence                        112567788999999999999999999999985  468999999998864

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=98.12  E-value=2.7e-06  Score=76.92  Aligned_cols=87  Identities=15%  Similarity=0.115  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .....++.+|+++++| ++         ...+||+|||++|..++.++++                   +.-.|+++...
T Consensus        42 ~~~~~~l~~~la~~~g-~~---------~~v~~~~~gt~a~~~al~~~~~-------------------~gd~vi~~~~~   92 (356)
T 1v72_A           42 DELTAQVKRKFCEIFE-RD---------VEVFLVPTGTAANALCLSAMTP-------------------PWGNIYCHPAS   92 (356)
T ss_dssp             SHHHHHHHHHHHHHHT-SC---------CEEEEESCHHHHHHHHHHTSCC-------------------TTEEEEECTTS
T ss_pred             chHHHHHHHHHHHHhC-CC---------CcEEEeCCccHHHHHHHHHhcC-------------------CCCEEEEcCcc
Confidence            4567778899999999 43         1379999999999998887532                   12357778899


Q ss_pred             cchHHHH--HHhc--CCceEEeeCCCCCCcCHHHHHH-HHHH
Q psy1678         250 HSSVERA--GLLG--GVTIRGLPADDSYKLRGDALEA-AIEE  286 (297)
Q Consensus       250 H~Si~Ka--a~~l--g~~v~~Vp~d~~~~md~~~L~~-~i~~  286 (297)
                      |++..++  +..+  |..++.||++ ++.+|+++|++ +|++
T Consensus        93 ~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~  133 (356)
T 1v72_A           93 HINNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREK  133 (356)
T ss_dssp             HHHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSS
T ss_pred             chhhhhchHHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhc
Confidence            9998877  7877  9999999986 58999999999 8864

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=98.12  E-value=3e-05  Score=74.53  Aligned_cols=110  Identities=10%  Similarity=-0.014  Sum_probs=87.2

Q ss_pred             ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCC
Q psy1678         160 GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA  239 (297)
Q Consensus       160 ~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~  239 (297)
                      ...|..++....+++.+.+|+.+..|++-..       ..-++|+|||+++..++.+...                  .+
T Consensus       127 ~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~-------~~i~~t~G~~~al~~~~~~l~~------------------~~  181 (500)
T 3tcm_A          127 TGAYSHSQGIHGLRDAIASGIASRDGFPANA-------DDIFLTDGASPGVHLMMQLLIR------------------NE  181 (500)
T ss_dssp             SSSCCCTTCCHHHHHHHHHHHHHHHSSCCCG-------GGEEEESSSHHHHHHHHHHHCC------------------ST
T ss_pred             CCCcCCCcChHHHHHHHHHHHHhhcCCCCCc-------ccEEEcCCHHHHHHHHHHHHcC------------------CC
Confidence            3456666777889999999999988875321       2589999999999888876410                  01


Q ss_pred             ceEEEecCCCcchHHHHHHhcCCceEEeeCCCC--CCcCHHHHHHHHHHHHHCCCcc
Q psy1678         240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIEEDLKKGKIP  294 (297)
Q Consensus       240 ~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~--~~md~~~L~~~i~~~~~~G~~P  294 (297)
                      .-.|+++.-.|+++..++...|.+++.+|+|++  +.+|+++|+++|++...+|..|
T Consensus       182 gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~  238 (500)
T 3tcm_A          182 KDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINV  238 (500)
T ss_dssp             TEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEE
T ss_pred             CCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCc
Confidence            235778899999999999999999999999864  5999999999999887776544

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.08  E-value=1.4e-05  Score=73.70  Aligned_cols=113  Identities=12%  Similarity=0.011  Sum_probs=83.9

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +.+.+...+......|...+...++++.+.+|+.+..|.+-+.       ...++|+|||+++..++.+..+        
T Consensus        59 v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~-------~~v~~~~g~t~al~~~~~~l~~--------  123 (389)
T 1o4s_A           59 VVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISP-------DQVVVTNGAKQALFNAFMALLD--------  123 (389)
T ss_dssp             HHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCG-------GGEEEESHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCH-------HHEEEecCHHHHHHHHHHHhCC--------
Confidence            3445555554333344444567889999999999988874110       2589999999999998877511        


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                                 +.-.|++++.+|+++..++...|.+++.||.++  ++.+|+++|+++|++
T Consensus       124 -----------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  173 (389)
T 1o4s_A          124 -----------PGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG  173 (389)
T ss_dssp             -----------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT
T ss_pred             -----------CCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc
Confidence                       112467788899999999999999999999985  578999999998854

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=98.08  E-value=1.6e-05  Score=76.58  Aligned_cols=121  Identities=10%  Similarity=-0.004  Sum_probs=77.7

Q ss_pred             CChHHHHHHHHHHHHHHHH-HHhhhhhc--chhhhhccc-----cCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy1678          17 GDVNEFKDFAKAMVDYVGN-YLENIRDR--YVQLQRFSQ-----MGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVL   88 (297)
Q Consensus        17 ~~~~~f~~~~~~~vd~i~~-y~~~~~~~--~v~~~v~p~-----l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~   88 (297)
                      ||+++||+.+++|+|+|+| |++++.++  ||.|.++|+     ++...|..+..++++++++.+. ..   .    .+.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~-~~---~----~~~  105 (515)
T 2jis_A           34 GDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRSQGESQKQILERCRAV-IR---Y----SVK  105 (515)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTTGGGCTTSCSCCCCCHHHHHHHHCCCCCSSCCCHHHHHHHHHHH-HH---H----SCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCHHHHHhhcccCCCCCCCCHHHHHHHHHHH-hc---C----CCC
Confidence            9999999999999999999 99999865  999999997     5666777777777777775443 22   1    121


Q ss_pred             CCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCC--CCHHHHHHHHHHHhcccc
Q psy1678          89 PTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA--NSYPAIVADILSDSIACI  159 (297)
Q Consensus        89 ~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~--~~~~svl~d~l~~~lN~n  159 (297)
                      . .+|.++ ...+     .+.....++.++.....       .+..++|..++  ......+.++++.+++..
T Consensus       106 ~-~~p~~~-~~~~-----~~~~~~~~~~~~l~~~~-------n~~~~~~~~s~~~~~le~~~~~~la~l~g~~  164 (515)
T 2jis_A          106 T-GHPRFF-NQLF-----SGLDPHALAGRIITESL-------NTSQYTYEIAPVFVLMEEEVLRKLRALVGWS  164 (515)
T ss_dssp             T-TSTTEE-SSSC-----CCCCHHHHHHHHHHHHH-------CCCTTCTTTCHHHHHHHHHHHHHHHHHHTCS
T ss_pred             C-CCCCeE-EEee-----CCCCHHHHHHHHHHHHh-------ccCCCchhhchHHHHHHHHHHHHHHHHhCCC
Confidence            1 245555 2222     23456666665544321       12223333333  233456678899888864

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=98.08  E-value=2.4e-05  Score=74.08  Aligned_cols=114  Identities=17%  Similarity=0.150  Sum_probs=82.4

Q ss_pred             HHHHHHHHhccccc---cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHH
Q psy1678         147 IVADILSDSIACIG---FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQ  223 (297)
Q Consensus       147 vl~d~l~~~lN~n~---~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~  223 (297)
                      .+.+.+...+....   ..|...+....+++.+.+|+.+..|.+ +.       ...++|+|||+++..++.+..+    
T Consensus        95 ~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~-------~~v~~t~G~~~al~~~~~~l~~----  162 (448)
T 3aow_A           95 IIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-QD-------NDIMITSGSQQALDLIGRVFLN----  162 (448)
T ss_dssp             HHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TT-------SEEEEESSHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-Ch-------hhEEEeCcHHHHHHHHHHHHcC----
Confidence            34444444443321   234334456788888888888888984 21       2589999999999988877421    


Q ss_pred             HHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678         224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~  288 (297)
                                     +.-.|++.+-+|++...++...|.+++.||+|++| +|+++|+++|+.+.
T Consensus       163 ---------------~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~  211 (448)
T 3aow_A          163 ---------------PGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELK  211 (448)
T ss_dssp             ---------------TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHH
T ss_pred             ---------------CCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhh
Confidence                           11246678889999999999999999999998876 99999999997443

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=98.07  E-value=3.8e-06  Score=75.77  Aligned_cols=89  Identities=13%  Similarity=0.037  Sum_probs=69.9

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      ++.......++.+++++++|.+++         ..++|+|||++|..++.+..+                   +.-.|++
T Consensus        29 ~~~~~~~~~~l~~~la~~~g~~~~---------~i~~~~g~t~a~~~~~~~~~~-------------------~gd~vl~   80 (352)
T 1iug_A           29 TEAAREVFLKARGLLREAFRTEGE---------VLILTGSGTLAMEALVKNLFA-------------------PGERVLV   80 (352)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCSSE---------EEEEESCHHHHHHHHHHHHCC-------------------TTCEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCc---------eEEEcCchHHHHHHHHHhccC-------------------CCCeEEE
Confidence            455556667899999999998743         589999999999999887521                   1125677


Q ss_pred             cCCCcchHH--HHHHhcCCceEEeeCCCCCCcCHHHHHH
Q psy1678         246 SDQAHSSVE--RAGLLGGVTIRGLPADDSYKLRGDALEA  282 (297)
Q Consensus       246 s~~aH~Si~--Kaa~~lg~~v~~Vp~d~~~~md~~~L~~  282 (297)
                      +..+|++..  +.+...|.+++.||+++++.+|+++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~  119 (352)
T 1iug_A           81 PVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK  119 (352)
T ss_dssp             EECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC
T ss_pred             EeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc
Confidence            888999975  4455579999999999999999998876

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=98.05  E-value=1.6e-05  Score=74.10  Aligned_cols=86  Identities=14%  Similarity=0.064  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc
Q psy1678         172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS  251 (297)
Q Consensus       172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~  251 (297)
                      +-.++.+++++++|.+.           .+++++||+++..++.+.+   .               .+.-.|+++..+|+
T Consensus        43 l~~~l~~~la~~~g~~~-----------~i~~~~gt~al~~~~~~~~---~---------------~~gd~Vl~~~~~~~   93 (418)
T 2c81_A           43 MERKFAKAFADFNGVPY-----------CVPTTSGSTALMLALEALG---I---------------GEGDEVIVPSLTWI   93 (418)
T ss_dssp             HHHHHHHHHHHHHTCSE-----------EEEESCHHHHHHHHHHHTT---C---------------CTTCEEEEESSSCT
T ss_pred             HHHHHHHHHHHHhCCCc-----------EEEeCCHHHHHHHHHHHcC---C---------------CCcCEEEECCCccH
Confidence            34456678889999863           7889999999999888752   0               01125778899999


Q ss_pred             hHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         252 SVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       252 Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      +...++...|.+++.||+++ ++.+|+++|+++|++
T Consensus        94 ~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~  129 (418)
T 2c81_A           94 ATATAVLNVNALPVFVDVEADTYCIDPQLIKSAITD  129 (418)
T ss_dssp             HHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCT
T ss_pred             hHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCC
Confidence            99999999999999999986 899999999988853

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=98.05  E-value=1.6e-05  Score=72.80  Aligned_cols=110  Identities=11%  Similarity=0.065  Sum_probs=80.6

Q ss_pred             HHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhh
Q psy1678         149 ADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEA  228 (297)
Q Consensus       149 ~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~  228 (297)
                      .+.+...+......+.  +....++.++.+|+++++|.+-..       ..-++|+|||+++..++.+..+         
T Consensus        51 ~~a~~~~~~~~~~~y~--~~~~~~~~~l~~~l~~~~g~~~~~-------~~v~~~~g~~~a~~~~~~~~~~---------  112 (391)
T 4dq6_A           51 IDSLKNRLEQEIYGYT--TRPDSYNESIVNWLYRRHNWKIKS-------EWLIYSPGVIPAISLLINELTK---------  112 (391)
T ss_dssp             HHHHHHHHTTCCCCCB--CCCHHHHHHHHHHHHHHHCCCCCG-------GGEEEESCHHHHHHHHHHHHSC---------
T ss_pred             HHHHHHHHhCCCCCCC--CCCHHHHHHHHHHHHHHhCCCCcH-------HHeEEcCChHHHHHHHHHHhCC---------
Confidence            4444444443332332  334788889999999999943210       2589999999999998887521         


Q ss_pred             CCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC--C--CCCcCHHHHHHHHHH
Q psy1678         229 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--D--SYKLRGDALEAAIEE  286 (297)
Q Consensus       229 ~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~--~~~md~~~L~~~i~~  286 (297)
                                +.-.|+++..+|.++..++...|.+++.||++  +  ++.+|+++|+++|++
T Consensus       113 ----------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  164 (391)
T 4dq6_A          113 ----------ANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD  164 (391)
T ss_dssp             ----------TTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT
T ss_pred             ----------CCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc
Confidence                      11256788899999999999999999999988  3  446999999998865

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=98.00  E-value=1.2e-05  Score=74.64  Aligned_cols=112  Identities=17%  Similarity=0.140  Sum_probs=83.0

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCC-CeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKG-GGVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~-~G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      +.+.+...+......|...+....+++.+.+|+.+.+|.+..       .. ..++|+|||+++..++.+..+       
T Consensus        43 v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~-------~~~~v~~t~g~~~al~~~~~~~~~-------  108 (411)
T 2o0r_A           43 MLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYD-------PETEVLVTVGATEAIAAAVLGLVE-------  108 (411)
T ss_dssp             HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC-------TTTSEEEEEHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCC-------CCceEEEeCCHHHHHHHHHHHhcC-------
Confidence            344444444432233444445678999999999999997522       12 589999999999998877521       


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC---CCcCHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS---YKLRGDALEAAIE  285 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~---~~md~~~L~~~i~  285 (297)
                                  +.-.|+++..+|+++..++...|.+++.||++++   +.+|+++|+++|+
T Consensus       109 ------------~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~  158 (411)
T 2o0r_A          109 ------------PGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVT  158 (411)
T ss_dssp             ------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCC
T ss_pred             ------------CCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhc
Confidence                        1125677889999999999999999999999753   7899999999885

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=98.00  E-value=3e-05  Score=70.93  Aligned_cols=109  Identities=9%  Similarity=-0.007  Sum_probs=80.2

Q ss_pred             HHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhh
Q psy1678         149 ADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEA  228 (297)
Q Consensus       149 ~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~  228 (297)
                      .+.+...+......+.  +....++..+.+|+++.+|++-+.       ..-+||+|||+++..++.+...         
T Consensus        46 ~~a~~~~~~~~~~~y~--~~~~~l~~~la~~l~~~~g~~~~~-------~~i~~~~g~~~a~~~~~~~l~~---------  107 (391)
T 3dzz_A           46 MASMEEKLKVAAFGYE--SVPAEYYKAVADWEEIEHRARPKE-------DWCVFASGVVPAISAMVRQFTS---------  107 (391)
T ss_dssp             HHHHHHHHTTCCCCCB--CCCHHHHHHHHHHHHHHHSCCCCG-------GGEEEESCHHHHHHHHHHHHSC---------
T ss_pred             HHHHHHHHhcCcCCCC--CCCHHHHHHHHHHHHHHhCCCCCH-------HHEEECCCHHHHHHHHHHHhCC---------
Confidence            3444444443322232  225788899999999999954211       2589999999999998887511         


Q ss_pred             CCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC---CCCCcCHHHHHHHHH
Q psy1678         229 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD---DSYKLRGDALEAAIE  285 (297)
Q Consensus       229 ~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d---~~~~md~~~L~~~i~  285 (297)
                                +.-.|+++..+|.++..++...|.+++.+|++   .++.+|+++|+++|+
T Consensus       108 ----------~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~  157 (391)
T 3dzz_A          108 ----------PGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLA  157 (391)
T ss_dssp             ----------TTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHT
T ss_pred             ----------CCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHh
Confidence                      11257789999999999999999999999996   234599999999986

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=98.00  E-value=3.6e-06  Score=77.17  Aligned_cols=89  Identities=20%  Similarity=0.144  Sum_probs=69.9

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      .+|...++|    +.+++++|.+           ..++|+|||+|+..++.+++-                  .+.-.|+
T Consensus        33 ~~~~~~~l~----~~la~~~~~~-----------~~~~~~sGt~al~~al~~~~~------------------~~gd~Vi   79 (367)
T 3nyt_A           33 LGPEVTELE----DRLADFVGAK-----------YCISCANGTDALQIVQMALGV------------------GPGDEVI   79 (367)
T ss_dssp             SCHHHHHHH----HHHHHHHTCS-----------EEEEESCHHHHHHHHHHHTTC------------------CTTCEEE
T ss_pred             CChHHHHHH----HHHHHHhCCC-----------cEEEeCCHHHHHHHHHHHhCC------------------CCcCEEE
Confidence            445555555    4666777775           289999999999999987631                  1122577


Q ss_pred             ecCCCcchHHHHHHhcCCceEEeeCCCC-CCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~-~~md~~~L~~~i~~  286 (297)
                      ++..+|.+...++...|.+++.+++|++ +.+|+++|+++|++
T Consensus        80 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~  122 (367)
T 3nyt_A           80 TPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITP  122 (367)
T ss_dssp             EESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCT
T ss_pred             ECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCc
Confidence            8899999999999999999999999965 99999999988743

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=97.99  E-value=2.3e-05  Score=73.27  Aligned_cols=114  Identities=14%  Similarity=0.019  Sum_probs=83.5

Q ss_pred             HHHHHHHHHhcccc---ccccccCchhhHHHHHHHHHHHHHcCCC---ccccccCCCCCCeEEcCChhHHHHHHHHHHHH
Q psy1678         146 AIVADILSDSIACI---GFTWIASPACTELEVVMLDWLGKMLDLP---KEFLACSGGKGGGVIQGTASEATLVALLGAKA  219 (297)
Q Consensus       146 svl~d~l~~~lN~n---~~~~~~~p~~~~iE~~v~~~l~~llg~~---~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~  219 (297)
                      ..+.+.+...+..+   ...|...+...++++.+.+|+.+.+|++   ++         ..++|+|||+++..++.+..+
T Consensus        61 ~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~---------~v~~t~G~~~al~~~~~~l~~  131 (425)
T 1vp4_A           61 KELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDED---------NLIFTVGSQQALDLIGKLFLD  131 (425)
T ss_dssp             HHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGG---------GEEEEEHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcc---------cEEEeccHHHHHHHHHHHhCC
Confidence            33455555554432   1234334456789999999998887854   32         589999999999888876411


Q ss_pred             HHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678         220 KTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~  288 (297)
                                         +.-.|++...+|+++..++...|.+++.||+++++ +|+++|+++|++..
T Consensus       132 -------------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~  180 (425)
T 1vp4_A          132 -------------------DESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFD  180 (425)
T ss_dssp             -------------------TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHH
T ss_pred             -------------------CCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhh
Confidence                               11246677889999999999999999999998875 99999999998743

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=97.99  E-value=5.8e-05  Score=70.08  Aligned_cols=114  Identities=5%  Similarity=-0.105  Sum_probs=81.8

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +.+.+....+.....|.......++.+.+.+|+....|....        ...++|+|||+++..++.+..+        
T Consensus        61 v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~--------~~i~~t~g~~~al~~~~~~l~~--------  124 (418)
T 3rq1_A           61 VKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGH--------IRSIATAGGTGGIHHLIHNYTE--------  124 (418)
T ss_dssp             HHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSE--------EEEEEESHHHHHHHHHHHHHSC--------
T ss_pred             HHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCcccc--------ccEEECCchHHHHHHHHHHhcC--------
Confidence            344444444322233444445677888888888777664311        1489999999999988875311        


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC-CCCCcCHHHHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d-~~~~md~~~L~~~i~~~~  288 (297)
                                 +.-.|+++.-+|.+...++...|.+++.||++ +++.+|+++|+++|++..
T Consensus       125 -----------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~  175 (418)
T 3rq1_A          125 -----------PGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELA  175 (418)
T ss_dssp             -----------TTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHH
T ss_pred             -----------CCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhh
Confidence                       11246778899999999999999999999995 567999999999998743

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=97.99  E-value=4.6e-05  Score=71.31  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=77.7

Q ss_pred             CchhhHHHHHHHHHHHHHcCC----CccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         166 SPACTELEVVMLDWLGKMLDL----PKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~----~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .+...++++.+.+|+.+..|+    +.+         ..+||+|||++|..++.+.++                   +.-
T Consensus        85 ~~g~~~l~~~la~~~~~~~~~~~~~~~~---------~v~~~~gg~~a~~~~~~~l~~-------------------~gd  136 (435)
T 3piu_A           85 YHGLPAFKKAMVDFMAEIRGNKVTFDPN---------HLVLTAGATSANETFIFCLAD-------------------PGE  136 (435)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTTSSCCCGG---------GEEEEEHHHHHHHHHHHHHCC-------------------TTC
T ss_pred             CCCcHHHHHHHHHHHHHhhCCCCCCCHH---------HEEEcCChHHHHHHHHHHhcC-------------------CCC
Confidence            344578999999999887763    232         589999999999998877521                   112


Q ss_pred             EEEecCCCcchHHHHHH-hcCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCCC
Q psy1678         242 VGYCSDQAHSSVERAGL-LGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKGK  292 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~-~lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G~  292 (297)
                      .|++.+..|.++..++. ..|.+++.+|.++  .+.+|+++|+++|++...++.
T Consensus       137 ~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~  190 (435)
T 3piu_A          137 AVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNL  190 (435)
T ss_dssp             EEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTC
T ss_pred             eEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCC
Confidence            56778889999999888 7899999999986  467999999999988766654

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=97.98  E-value=2.4e-05  Score=70.81  Aligned_cols=85  Identities=12%  Similarity=0.118  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH
Q psy1678         174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV  253 (297)
Q Consensus       174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si  253 (297)
                      .++.+++++++|.+.+         .-++|+|||+++..++.+..+                   +.-.|+++..+|.++
T Consensus        54 ~~l~~~la~~~~~~~~---------~i~~~~g~~~a~~~~~~~l~~-------------------~gd~vl~~~~~~~~~  105 (354)
T 3ly1_A           54 LMLGNKLAAHHQVEAP---------SILLTAGSSEGIRAAIEAYAS-------------------LEAQLVIPELTYGDG  105 (354)
T ss_dssp             HHHHHHHHHHTTSCGG---------GEEEESHHHHHHHHHHHHHCC-------------------TTCEEEEESSSCTHH
T ss_pred             HHHHHHHHHHhCCChH---------HEEEeCChHHHHHHHHHHHhC-------------------CCCeEEECCCCchHH
Confidence            3567889999998654         589999999999988876411                   112466788999999


Q ss_pred             HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         254 ERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       254 ~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ..++...|.+++.||.++++.+|+++|+++|++
T Consensus       106 ~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~  138 (354)
T 3ly1_A          106 EHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAA  138 (354)
T ss_dssp             HHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHT
T ss_pred             HHHHHHcCCEEEEecCCCCCCCCHHHHHHHhcc
Confidence            999999999999999998899999999999973

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=97.97  E-value=1.3e-05  Score=72.51  Aligned_cols=90  Identities=16%  Similarity=0.121  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc
Q psy1678         172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS  251 (297)
Q Consensus       172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~  251 (297)
                      ...++.+++++++|.+.+.       ...+||+|||+++..++.+.+.                  ..+-+++++...|.
T Consensus        38 ~~~~l~~~la~~~g~~~~~-------~~v~~~~g~t~a~~~~~~~~~~------------------~gd~vi~~~~~~~~   92 (366)
T 1m32_A           38 VVEQIRQQLTALATASEGY-------TSVLLQGSGSYAVEAVLGSALG------------------PQDKVLIVSNGAYG   92 (366)
T ss_dssp             THHHHHHHHHHHHCSSSSE-------EEEEEESCHHHHHHHHHHHSCC------------------TTCCEEEEESSHHH
T ss_pred             HHHHHHHHHHHHhCCCCcC-------cEEEEecChHHHHHHHHHHhcC------------------CCCeEEEEeCCCcc
Confidence            3445777888999843210       1489999999999999887631                  01235667778887


Q ss_pred             h-HHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         252 S-VERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       252 S-i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      + +.+++...|++++.||++.++.+|+++|+++|++
T Consensus        93 ~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  128 (366)
T 1m32_A           93 ARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNA  128 (366)
T ss_dssp             HHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhc
Confidence            6 5678888999999999999999999999999976

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=97.97  E-value=6.1e-05  Score=69.17  Aligned_cols=91  Identities=14%  Similarity=0.077  Sum_probs=67.4

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      +..++...++|+    .+++++|.+.           .+++++||+||..++.+.+   .               .+.-.
T Consensus        34 ~~~~~~~~~l~~----~la~~~~~~~-----------~i~~~sGt~al~~~l~~l~---~---------------~~gd~   80 (388)
T 1b9h_A           34 RMGGDEVNSFER----EFAAHHGAAH-----------ALAVTNGTHALELALQVMG---V---------------GPGTE   80 (388)
T ss_dssp             TTTCSHHHHHHH----HHHHHTTCSE-----------EEEESCHHHHHHHHHHHTT---C---------------CTTCE
T ss_pred             ecCCHHHHHHHH----HHHHHhCCCe-----------EEEeCCHHHHHHHHHHHcC---C---------------CCcCE
Confidence            334455555554    5667777753           4555556999999888752   1               01125


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      |+++..+|+++..++...|+.++.||+|+ ++.+|+++|+++|++
T Consensus        81 Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~  125 (388)
T 1b9h_A           81 VIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP  125 (388)
T ss_dssp             EEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT
T ss_pred             EEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc
Confidence            77899999999999999999999999997 489999999998853

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=97.96  E-value=1.5e-05  Score=75.53  Aligned_cols=115  Identities=10%  Similarity=0.065  Sum_probs=79.4

Q ss_pred             HHHHHHHhccccccccccC-chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIACIGFTWIAS-PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~-p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      +.+.+....+.+...|..+ +....+..++.+|+++++|.+++         .-+||+|+|+++..++.+..+.      
T Consensus        87 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~---------~v~~t~g~t~al~~~~~~~~~~------  151 (465)
T 3e9k_A           87 LEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEK---------EIALMNALTVNLHLLMLSFFKP------  151 (465)
T ss_dssp             HHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGG---------GEEECSCHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcC---------CEEEECCHHHHHHHHHHHhccc------
Confidence            4455544334433333332 23344556688999999999864         5889999999988877764210      


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcch----HHHHHHhcCCc-----eEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSS----VERAGLLGGVT-----IRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~S----i~Kaa~~lg~~-----v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                        +        ..+-.|+++..+|+|    +...++..|+.     +..+|.+.++.+|+++|+++|++.
T Consensus       152 --~--------~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~  211 (465)
T 3e9k_A          152 --T--------PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKE  211 (465)
T ss_dssp             --C--------SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHH
T ss_pred             --c--------CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhc
Confidence              1        123468889999988    55577788986     345678889999999999999754

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=97.96  E-value=8.6e-05  Score=68.46  Aligned_cols=150  Identities=7%  Similarity=-0.085  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhcc-ccccccccCchhhHHHHHHHHHHHHHcCCCcccc
Q psy1678         113 EVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIA-CIGFTWIASPACTELEVVMLDWLGKMLDLPKEFL  191 (297)
Q Consensus       113 ~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN-~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~  191 (297)
                      .+.+.+...-.+.....+.+.|+.+...++..+.+ .+.+..... .....|........+-+.+.+|+....|.+-+  
T Consensus        17 ~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v-~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~--   93 (401)
T 7aat_A           17 GVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCV-RKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFK--   93 (401)
T ss_dssp             HHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHH-HHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH--
T ss_pred             HHHHHHhhCCCCCceeeeeeeEECCCCCEechHHH-HHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccc--
Confidence            34444443322333444445454444334333333 333333332 12223433344556666677777766664311  


Q ss_pred             ccCCCCCCeEE--cCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeC
Q psy1678         192 ACSGGKGGGVI--QGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPA  269 (297)
Q Consensus       192 ~~~~~~~~G~~--tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~  269 (297)
                           ...-++  |+|||+++..++.+.+... .               +.-.|+++.-+|.+...+++..|.+++.+|+
T Consensus        94 -----~~~i~~v~t~G~~~al~~~~~~l~~~~-~---------------~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~  152 (401)
T 7aat_A           94 -----SGRYVTVQGISGTGSLRVGANFLQRFF-K---------------FSRDVYLPKPSWGNHTPIFRDAGLQLQAYRY  152 (401)
T ss_dssp             -----TTCEEEEEEEHHHHHHHHHHHHHHHHC-T---------------TCCEEEEEESCCTTHHHHHHHTTCEEEEEEC
T ss_pred             -----cCceEEEecCcchHHHHHHHHHHHHhc-c---------------CCCEEEEcCCCchhHHHHHHHcCCeeEeeee
Confidence                 014555  9999999999987764321 0               1125667888999999999999999999998


Q ss_pred             C--CCCCcCHHHHHHHHHH
Q psy1678         270 D--DSYKLRGDALEAAIEE  286 (297)
Q Consensus       270 d--~~~~md~~~L~~~i~~  286 (297)
                      +  +++.+|++.|++.+++
T Consensus       153 ~~~~~~~~d~~~l~~~l~~  171 (401)
T 7aat_A          153 YDPKTCSLDFTGAMEDISK  171 (401)
T ss_dssp             EETTTTEECHHHHHHHHTT
T ss_pred             eccccCccCHHHHHHHHHh
Confidence            6  4799999999888875

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=97.96  E-value=4.6e-05  Score=69.66  Aligned_cols=92  Identities=9%  Similarity=-0.023  Sum_probs=73.7

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ..++++.+.+|+.+.+|++-..       ..-++|+|||+++..++.+..+                   +.-.|++++.
T Consensus        71 ~~~l~~~la~~l~~~~g~~~~~-------~~v~~~~G~~~al~~~~~~l~~-------------------~gd~Vl~~~~  124 (369)
T 3cq5_A           71 AVELRDELAAYITKQTGVAVTR-------DNLWAANGSNEILQQLLQAFGG-------------------PGRTALGFQP  124 (369)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCG-------GGEEEESHHHHHHHHHHHHHCS-------------------TTCEEEEEES
T ss_pred             HHHHHHHHHHhhhhcccCCCCh-------HhEEECCChHHHHHHHHHHhcC-------------------CCCEEEEcCC
Confidence            3688999999999987765210       2588999999999888766411                   1124677789


Q ss_pred             CcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         249 AHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       249 aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +|.++..++...|.+++.||.|+++.+|+++|+++|++
T Consensus       125 ~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  162 (369)
T 3cq5_A          125 SYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRA  162 (369)
T ss_dssp             SCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhc
Confidence            99999999999999999999998889999999999975

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=97.95  E-value=8.8e-05  Score=69.41  Aligned_cols=82  Identities=11%  Similarity=0.028  Sum_probs=64.4

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .....++.+++++++|.+.           .+++++||++|+.++.+.    ..               +.-.|+++...
T Consensus       108 ~~~~~~l~~~la~~~g~~~-----------~i~~~sGs~a~~~al~~l----~~---------------~gd~vl~~~~~  157 (427)
T 2w8t_A          108 FHDHMEVEQALRDFYGTTG-----------AIVFSTGYMANLGIISTL----AG---------------KGEYVILDADS  157 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCSE-----------EEEESCHHHHHHHHHHHH----SC---------------TTCEEEEETTC
T ss_pred             cHHHHHHHHHHHHHhCCCc-----------eEEecCcHHHHHHHHHHh----cC---------------CCCEEEECCcc
Confidence            4566667788889888763           678888899999877763    11               12257788999


Q ss_pred             cchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         250 HSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       250 H~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      |.++..++...|.+++.+|.     +|+++|++.|++
T Consensus       158 h~~~~~~~~~~g~~~~~~~~-----~d~~~le~~l~~  189 (427)
T 2w8t_A          158 HASIYDGCQQGNAEIVRFRH-----NSVEDLDKRLGR  189 (427)
T ss_dssp             CHHHHHHHHHSCSEEEEECT-----TCHHHHHHHHHT
T ss_pred             cHHHHHHHHHcCCeeEEeCC-----CCHHHHHHHHHh
Confidence            99999999999999888873     799999999975

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=97.94  E-value=1.9e-05  Score=73.19  Aligned_cols=98  Identities=8%  Similarity=-0.034  Sum_probs=77.3

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |...+...++++.+.+|+.+..|++-+.       ...++|+|||+++..++.+..+                   +.-.
T Consensus        74 y~~~~g~~~l~~~la~~l~~~~g~~~~~-------~~v~~t~g~~~al~~~~~~l~~-------------------~gd~  127 (406)
T 1xi9_A           74 YGDSEGLPELRKAIVEREKRKNGVDITP-------DDVRVTAAVTEALQLIFGALLD-------------------PGDE  127 (406)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHCCCCCG-------GGEEEESHHHHHHHHHHHHHCC-------------------TTCE
T ss_pred             CCCCCCcHHHHHHHHHHHHHhcCCCCCH-------HHEEEcCChHHHHHHHHHHhCC-------------------CCCE
Confidence            4444456789999999999988865321       2589999999999998887511                   1125


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                      |+++..+|.++..++...|.+++.||+++  .+.+|+++|+++|++
T Consensus       128 Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  173 (406)
T 1xi9_A          128 ILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD  173 (406)
T ss_dssp             EEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT
T ss_pred             EEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCc
Confidence            67788999999999999999999999984  567999999998864

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=97.93  E-value=0.00015  Score=67.43  Aligned_cols=151  Identities=9%  Similarity=-0.039  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccc-cccccccCchhhHHHHHHHHHHHHHcCCCcc
Q psy1678         111 WQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIAC-IGFTWIASPACTELEVVMLDWLGKMLDLPKE  189 (297)
Q Consensus       111 ~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~-n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~  189 (297)
                      .-.+...+.+.-.++......+-|...-..++.++.+ .+.+...+.. ....|........+.+.+.+|+....+.+-.
T Consensus        36 i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v-~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~  114 (420)
T 4f4e_A           36 ILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAV-RDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIA  114 (420)
T ss_dssp             HHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHH-HHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHH-HHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccc
Confidence            3444444444323334444444333222222222343 3444444443 2223444445566777777777655442101


Q ss_pred             ccccCCCCC--CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEe
Q psy1678         190 FLACSGGKG--GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGL  267 (297)
Q Consensus       190 ~~~~~~~~~--~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~V  267 (297)
                             ..  ..++|+|||+++..++....-.  .               +.-.|++++-+|.+...++...|.+++.|
T Consensus       115 -------~~~~~i~~t~G~t~al~~~~~~~~~~--~---------------~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v  170 (420)
T 4f4e_A          115 -------AGRVVTAQALGGTGALKIGADFLRTL--N---------------PKAKVAISDPSWENHRALFDMAGFEVVAY  170 (420)
T ss_dssp             -------TTCEEEEEEEHHHHHHHHHHHHHHHH--C---------------TTCCEEEEESCCHHHHHHHHHTTCCEEEE
T ss_pred             -------cCceEEEECCccHHHHHHHHHHHHHh--C---------------CCCEEEEeCCCcHhHHHHHHHcCCeEEEe
Confidence                   01  3799999999999986543211  0               11146678899999999999999999999


Q ss_pred             eC--CCCCCcCHHHHHHHHHH
Q psy1678         268 PA--DDSYKLRGDALEAAIEE  286 (297)
Q Consensus       268 p~--d~~~~md~~~L~~~i~~  286 (297)
                      |+  ++++.+|++.|++.|++
T Consensus       171 ~~~~~~~~~~d~~~l~~~l~~  191 (420)
T 4f4e_A          171 PYYDAKTNGVNFDGMLAALNG  191 (420)
T ss_dssp             ECEETTTTEECHHHHHHHHTT
T ss_pred             eeeccccCccCHHHHHHHHHh
Confidence            99  45799999999999864

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=97.92  E-value=4.2e-05  Score=70.44  Aligned_cols=99  Identities=13%  Similarity=0.078  Sum_probs=77.0

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |...+....+.+.+.+|+.+.+|++-+.       ..-+||+|||+++..++.+..+                  ..+-.
T Consensus        72 y~~~~g~~~lr~~la~~l~~~~g~~~~~-------~~i~~~~g~~~al~~~~~~l~~------------------~g~d~  126 (398)
T 3ele_A           72 YTSAQGDVETRAAIAEFLNNTHGTHFNA-------DNLYMTMGAAASLSICFRALTS------------------DAYDE  126 (398)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHCCCCCG-------GGEEEESSHHHHHHHHHHHHCC------------------STTCE
T ss_pred             cCCCCCcHHHHHHHHHHHHHHhCCCCCh-------HHEEEccCHHHHHHHHHHHHcC------------------CCCCE
Confidence            4334455788899999999999864221       2589999999999998887511                  11125


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      |++...+|.++..++...|.+++.||+++ ++.+|+++|+++|++
T Consensus       127 vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~  171 (398)
T 3ele_A          127 FITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERINA  171 (398)
T ss_dssp             EEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCCT
T ss_pred             EEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhCc
Confidence            66788899999999999999999999985 579999999988753

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=97.92  E-value=1.5e-05  Score=72.66  Aligned_cols=85  Identities=15%  Similarity=0.030  Sum_probs=68.9

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+.+++++|.+           ..++|+|||+++..++.+.+.+ .               .+.-.|+++..+|++..
T Consensus        36 ~l~~~la~~~~~~-----------~v~~~~ggt~al~~~~~~~~~~-~---------------~~gd~Vl~~~~~~~~~~   88 (375)
T 2fnu_A           36 LFEEALCEFLGVK-----------HALVFNSATSALLTLYRNFSEF-S---------------ADRNEIITTPISFVATA   88 (375)
T ss_dssp             HHHHHHHHHHTCS-----------EEEEESCHHHHHHHHHHHSSCC-C---------------TTSCEEEECSSSCTHHH
T ss_pred             HHHHHHHHHhCCC-----------eEEEeCCHHHHHHHHHHHhccc-C---------------CCCCEEEECCCccHhHH
Confidence            4556778888876           2899999999999999886321 0               01225778999999999


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .++...|++++.||+++++.+|+++|+++|++
T Consensus        89 ~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~  120 (375)
T 2fnu_A           89 NMLLESGYTPVFAGIKNDGNIDELALEKLINE  120 (375)
T ss_dssp             HHHHHTTCEEEECCBCTTSSBCGGGSGGGCCT
T ss_pred             HHHHHCCCEEEEeccCCCCCCCHHHHHhhcCc
Confidence            99999999999999998889999999988853

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=97.90  E-value=5.2e-05  Score=70.73  Aligned_cols=91  Identities=14%  Similarity=0.072  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .+++..+.+|+++.+|++...       ..-+||+|||+||..++.+++.                   +.-.|++...+
T Consensus        99 ~~l~~~l~~~l~~~~g~~~~~-------~~v~~~~g~~ea~~~a~~~~~~-------------------~gd~Vi~~~~~  152 (421)
T 3l8a_A           99 DDLYQAVIDWERKEHDYAVVK-------EDILFIDGVVPAISIALQAFSE-------------------KGDAVLINSPV  152 (421)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCG-------GGEEEESCHHHHHHHHHHHHSC-------------------TEEEEEEEESC
T ss_pred             HHHHHHHHHHHHHHhCCCCCH-------HHEEEcCCHHHHHHHHHHHhcC-------------------CCCEEEECCCC
Confidence            678889999999999965221       2589999999999999987521                   12356778899


Q ss_pred             cchHHHHHHhcCCceEEeeCC-C--CCCcCHHHHHHHHHH
Q psy1678         250 HSSVERAGLLGGVTIRGLPAD-D--SYKLRGDALEAAIEE  286 (297)
Q Consensus       250 H~Si~Kaa~~lg~~v~~Vp~d-~--~~~md~~~L~~~i~~  286 (297)
                      |+++..++...|.+++.+|.+ .  ++.+|+++|+++|++
T Consensus       153 y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~  192 (421)
T 3l8a_A          153 YYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID  192 (421)
T ss_dssp             CHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH
T ss_pred             cHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc
Confidence            999999999999999999986 3  347999999999974

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=97.88  E-value=6.2e-05  Score=70.15  Aligned_cols=112  Identities=13%  Similarity=0.087  Sum_probs=82.0

Q ss_pred             HHHHHHHhccc---cccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCC-CeEEcCChhHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIAC---IGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKG-GGVIQGTASEATLVALLGAKAKTMQ  223 (297)
Q Consensus       148 l~d~l~~~lN~---n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~-~G~~tsGGT~anl~Al~~AR~~~~~  223 (297)
                      +.+.+...++.   ....|...+....+++.+.+|+.+.+|.+.+       .. ..+||+|||+++..++.+...    
T Consensus        55 v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~-------~~~~v~~~~g~~~a~~~~~~~~~~----  123 (429)
T 1yiz_A           55 ALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTIN-------PMTEVLVTVGAYEALYATIQGHVD----  123 (429)
T ss_dssp             HHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCC-------TTTSEEEESHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCC-------CcCCEEEecChHHHHHHHHHHhcC----
Confidence            34555555543   1223333344678988999999998886521       12 589999999999998887521    


Q ss_pred             HHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC----------CCCcCHHHHHHHHH
Q psy1678         224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD----------SYKLRGDALEAAIE  285 (297)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~----------~~~md~~~L~~~i~  285 (297)
                                     +.-.|+++..+|.++..++...|.+++.||++.          ++.+|+++|+++|+
T Consensus       124 ---------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  180 (429)
T 1yiz_A          124 ---------------EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN  180 (429)
T ss_dssp             ---------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC
T ss_pred             ---------------CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHHhc
Confidence                           112466778899999999999999999999986          46899999999885

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=97.87  E-value=6.1e-05  Score=69.36  Aligned_cols=91  Identities=10%  Similarity=-0.089  Sum_probs=72.1

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ..++++.+.+|+.+.+|++...       ..-++|+|||+++..++.+..+                   +.-.|++...
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~-------~~v~~t~g~~~a~~~~~~~l~~-------------------~gd~vl~~~p  121 (399)
T 1c7n_A           68 TEEYKKTVKKWMKDRHQWDIQT-------DWIINTAGVVPAVFNAVREFTK-------------------PGDGVIIITP  121 (399)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCG-------GGEEEESSHHHHHHHHHHHHCC-------------------TTCEEEECSS
T ss_pred             cHHHHHHHHHHHHHHhCCCCCh-------hhEEEcCCHHHHHHHHHHHhcC-------------------CCCEEEEcCC
Confidence            6788889999999988854211       2589999999999988876421                   1125677889


Q ss_pred             CcchHHHHHHhcCCceEEeeCC-CC--CCcCHHHHHHHHH
Q psy1678         249 AHSSVERAGLLGGVTIRGLPAD-DS--YKLRGDALEAAIE  285 (297)
Q Consensus       249 aH~Si~Kaa~~lg~~v~~Vp~d-~~--~~md~~~L~~~i~  285 (297)
                      +|.++..++...|.+++.||++ ++  +.+|+++|+++|+
T Consensus       122 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~  161 (399)
T 1c7n_A          122 VYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSK  161 (399)
T ss_dssp             CCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHT
T ss_pred             CcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhc
Confidence            9999999999999999999986 43  3699999999986

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=97.87  E-value=7.4e-06  Score=75.04  Aligned_cols=91  Identities=15%  Similarity=0.095  Sum_probs=70.1

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      +..++...++|+    .+++++|.+           ..+||+|||+||..++.+.+   .               .+.-.
T Consensus        32 ~~~~~~~~~l~~----~la~~~~~~-----------~~i~~~sgt~al~~~l~~l~---~---------------~~gd~   78 (373)
T 3frk_A           32 FILGDEDKKFEQ----EFADYCNVN-----------YCIGCGNGLDALHLILKGYD---I---------------GFGDE   78 (373)
T ss_dssp             CSSSHHHHHHHH----HHHHHHTSS-----------EEEEESCHHHHHHHHHHHTT---C---------------CTTCE
T ss_pred             ccCCchHHHHHH----HHHHHhCCC-----------eEEEeCCHHHHHHHHHHHcC---C---------------CCcCE
Confidence            334455555555    566667765           28999999999999888752   0               11225


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEeeCC-CCCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d-~~~~md~~~L~~~i~~  286 (297)
                      |+++..+|+++..++...|.+++.+++| +++.+|+++|+++|++
T Consensus        79 Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~  123 (373)
T 3frk_A           79 VIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITE  123 (373)
T ss_dssp             EEEETTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCT
T ss_pred             EEECCCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCC
Confidence            7789999999999999999999999998 6799999999988754

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=97.86  E-value=0.00054  Score=64.58  Aligned_cols=151  Identities=5%  Similarity=-0.126  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhc--c-ccccccccCchhhHHHHHHHHHHHHHcCCC
Q psy1678         111 WQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSI--A-CIGFTWIASPACTELEVVMLDWLGKMLDLP  187 (297)
Q Consensus       111 ~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~l--N-~n~~~~~~~p~~~~iE~~v~~~l~~llg~~  187 (297)
                      .-.+.+.++..-.+.......+.|+.+-..+....++ .+.+....  + .....|...+....+.+.+.+|+   +|.+
T Consensus        36 i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av-~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l---~g~~  111 (448)
T 3meb_A           36 ILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAV-KEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLM---FGKD  111 (448)
T ss_dssp             THHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHH-HHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHH---HCTT
T ss_pred             HHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHH-HHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHh---cCCC
Confidence            4455555554433333444444454443333333333 33333333  1 11223333334445555555555   2654


Q ss_pred             ccccccCCCCCCeEE--cCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHH----hcC
Q psy1678         188 KEFLACSGGKGGGVI--QGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGL----LGG  261 (297)
Q Consensus       188 ~~~~~~~~~~~~G~~--tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~----~lg  261 (297)
                      ....    ....-++  |+|||+|+..++...+..  .               +.-.|+++.-+|.+....+.    ..|
T Consensus       112 ~~~~----~~~~i~~~~t~ggt~al~l~~~~~~~~--~---------------~gd~Vlv~~p~~~~~~~~~~~~~~~~G  170 (448)
T 3meb_A          112 SKAA----QEGRIASCQSLSGTGSLHIGFEFLHLW--M---------------PKAEFYMPSTTWPNHYGIYDKVFNKLK  170 (448)
T ss_dssp             CHHH----HTTCEEEEEESHHHHHHHHHHHHHHHH--C---------------TTCCEEEESSCCTHHHHHHHHHHCTTT
T ss_pred             cccc----CcCcEEEEECCcHHHHHHHHHHHHHHh--C---------------CCCEEEECCCCCHhHHHHHHhhHHhCC
Confidence            1000    0025778  999999998765433221  0               11246778899999999999    999


Q ss_pred             CceEEeeC-CCC--CCcCHHHHHHHHHH
Q psy1678         262 VTIRGLPA-DDS--YKLRGDALEAAIEE  286 (297)
Q Consensus       262 ~~v~~Vp~-d~~--~~md~~~L~~~i~~  286 (297)
                      .+++.+|+ |++  +.+|+++|+++|++
T Consensus       171 ~~v~~~~~~~~~~~~~~d~e~l~~~l~~  198 (448)
T 3meb_A          171 VPYKEYTYLRKDGELEIDFSNTKKDIQS  198 (448)
T ss_dssp             SCCEEECCBCTTSCSSBCHHHHHHHHHH
T ss_pred             CeEEEEeccccccCCCcCHHHHHHHHHh
Confidence            99999999 764  89999999999975

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=97.86  E-value=3.7e-05  Score=73.62  Aligned_cols=122  Identities=10%  Similarity=0.084  Sum_probs=83.1

Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHhhhhhcchhhhhccc-----cCCC-CCCChHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy1678          15 IMGDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQ-----MGSN-IMGDVNEFKDFAKAMVDYVGNYLENIRDRRVL   88 (297)
Q Consensus        15 ~~~~~~~f~~~~~~~vd~i~~y~~~~~~~~v~~~v~p~-----l~~~-~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~   88 (297)
                      ..|+.++||+.+++|+|+|++|+++++  ++.+.+.|+     ++.. .|.+++.++++++++.+.+.+        ...
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--------~~~   96 (497)
T 2qma_A           27 GELGSAEFASVMSHTTSAMKSVFEQVN--APYSGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAK--------NAI   96 (497)
T ss_dssp             STTTTHHHHHHHHHHHHHHHHHHHHCC--SSSCCCCHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHTTT--------TSC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCCHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhc--------CCC
Confidence            468999999999999999999999993  448888886     5654 477888888888887776553        345


Q ss_pred             CCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCC--CCHHHHHHHHHHHhcccc
Q psy1678          89 PTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTA--NSYPAIVADILSDSIACI  159 (297)
Q Consensus        89 ~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~--~~~~svl~d~l~~~lN~n  159 (297)
                      ++.+|.++ ..+..     +.....+++.+.......       ....|-.++  ......+.+|++.+++.+
T Consensus        97 ~~~~~~yl-~~~~~-----~~~~~~v~~~~~~~~~n~-------~~~~~~~~~~~~~le~~~~~~la~~~g~~  156 (497)
T 2qma_A           97 FTQHPDCI-AHLHT-----PPLMPAVAAEAMIAALNQ-------SMDSWDQASSATYVEQKVVNWLCDKYDLS  156 (497)
T ss_dssp             CTTSTTBC-SSSCC-----CCBHHHHHHHHHHHHHCC-------CTTCGGGCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCee-EeCCC-----CCcHHHHHHHHHHHhhcc-------cccchhhChHHHHHHHHHHHHHHHHhCCC
Confidence            66677766 33222     356777888776554311       112222222  234566788899999763

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=97.86  E-value=3.5e-05  Score=70.02  Aligned_cols=84  Identities=12%  Similarity=0.105  Sum_probs=68.5

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+++++++|.+.+         ..+||+|||+++..++.+...                   +.-.|+++..+|+++.
T Consensus        71 ~lr~~la~~~~~~~~---------~v~~~~g~t~a~~~~~~~~~~-------------------~gd~vl~~~~~~~~~~  122 (363)
T 3ffh_A           71 SLRKEVADFYQLEEE---------ELIFTAGVDELIELLTRVLLD-------------------TTTNTVMATPTFVQYR  122 (363)
T ss_dssp             HHHHHHHHHHTCCGG---------GEEEESSHHHHHHHHHHHHCS-------------------TTCEEEEEESSCHHHH
T ss_pred             HHHHHHHHHhCCChh---------hEEEeCCHHHHHHHHHHHHcc-------------------CCCEEEEcCCChHHHH
Confidence            455678888887654         589999999999998876411                   1124667778999999


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .++...|.+++.||.++++.+|+++|+++|++
T Consensus       123 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  154 (363)
T 3ffh_A          123 QNALIEGAEVREIPLLQDGEHDLEGMLNAIDE  154 (363)
T ss_dssp             HHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT
T ss_pred             HHHHHcCCEEEEecCCCCCCcCHHHHHHhccc
Confidence            99999999999999998999999999998853

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=97.86  E-value=0.00013  Score=67.59  Aligned_cols=150  Identities=7%  Similarity=-0.068  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHH-hcccc-ccccccCchhhHHHHHHHHHHHHHcCCCcc
Q psy1678         112 QEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSD-SIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKE  189 (297)
Q Consensus       112 ~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~-~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~  189 (297)
                      -.+.+.+.+.-.+.....+++.++++-.....++. +.+.+.. .+... ...|...+....+.+.+.+|+....|.+-+
T Consensus        17 ~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~-v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~   95 (412)
T 1yaa_A           17 FGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPS-VKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQ   95 (412)
T ss_dssp             HHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHH-HHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHH-HHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCC
Confidence            34444443321123344555544333222122233 4455555 54422 223433445667777777777665553211


Q ss_pred             ccccCCCCCCeEE--cCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEe
Q psy1678         190 FLACSGGKGGGVI--QGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGL  267 (297)
Q Consensus       190 ~~~~~~~~~~G~~--tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~V  267 (297)
                             ...-++  |+|||+|+..++...+..  .               +.-.|+++.-+|.+...++...|.+++.|
T Consensus        96 -------~~~i~~~~t~g~~~a~~~~~~~~~~~--~---------------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v  151 (412)
T 1yaa_A           96 -------EDRVISVQSLSGTGALHISAKFFSKF--F---------------PDKLVYLSKPTWANHMAIFENQGLKTATY  151 (412)
T ss_dssp             -------TTCEEEEEEEHHHHHHHHHHHHHHHH--C---------------TTCCEEEEESCCTTHHHHHHTTTCCEEEE
T ss_pred             -------cceEEEEeccchHhHHHHHHHHHHHh--C---------------CCCEEEEeCCCCccHHHHHHHcCceEEEE
Confidence                   025788  999999999886554321  0               11135667789999999999999999999


Q ss_pred             eC-CC-CCCcCHHHHHHHHHH
Q psy1678         268 PA-DD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       268 p~-d~-~~~md~~~L~~~i~~  286 (297)
                      |. ++ ++.+|+++|+++|++
T Consensus       152 ~~~~~~~~~~d~~~l~~~l~~  172 (412)
T 1yaa_A          152 PYWANETKSLDLNGFLNAIQK  172 (412)
T ss_dssp             ECEETTTTEECHHHHHHHHHH
T ss_pred             eeecCCCCccCHHHHHHHHHh
Confidence            98 53 789999999999975

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=97.84  E-value=4.5e-05  Score=70.54  Aligned_cols=87  Identities=16%  Similarity=0.065  Sum_probs=68.7

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      |...++|+    .+++++|.+           ..++|+|||+++..++.+.+   .               .+.-.|+++
T Consensus        32 ~~~~~l~~----~la~~~~~~-----------~v~~~~ggt~al~~~~~~l~---~---------------~~gd~Vl~~   78 (394)
T 1o69_A           32 EFVNRFEQ----SVKDYSKSE-----------NALALNSATAALHLALRVAG---V---------------KQDDIVLAS   78 (394)
T ss_dssp             HHHHHHHH----HHHHHHCCS-----------EEEEESCHHHHHHHHHHHTT---C---------------CTTCEEEEE
T ss_pred             hHHHHHHH----HHHHHhCCC-----------cEEEeCCHHHHHHHHHHHcC---C---------------CCCCEEEEC
Confidence            43445554    556666763           38999999999999988752   1               011257788


Q ss_pred             CCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         247 DQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       247 ~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ..+|.+...++...|.+++.+|+++++.+|+++|+++|++
T Consensus        79 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~  118 (394)
T 1o69_A           79 SFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKE  118 (394)
T ss_dssp             SSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhc
Confidence            9999999999999999999999998999999999999975

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=97.84  E-value=0.00026  Score=64.89  Aligned_cols=97  Identities=12%  Similarity=0.037  Sum_probs=70.9

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEE--cCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVI--QGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN  240 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~--tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~  240 (297)
                      |...+...++.+.+.+|+... +.+++         .-+|  |+|||+|+..++.+.+... +     |          +
T Consensus        65 y~~~~g~~~lr~~la~~~~~~-~~~~~---------~v~~~~~~g~~~a~~~~~~~~~~~~-~-----g----------d  118 (394)
T 2ay1_A           65 YAGLSGEPEFQKAMGELILGD-GLKSE---------TTATLATVGGTGALRQALELARMAN-P-----D----------L  118 (394)
T ss_dssp             CCCSSCCHHHHHHHHHHHHGG-GCCGG---------GEEEEEEEHHHHHHHHHHHHHHHHC-T-----T----------C
T ss_pred             CCCCCCcHHHHHHHHHHHhCC-CCCcc---------cEEEEecCCchhHHHHHHHHHHhcC-C-----C----------C
Confidence            433344567777777776432 22332         4677  9999999999998775421 0     1          1


Q ss_pred             eEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678         241 LVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE  286 (297)
Q Consensus       241 ~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~  286 (297)
                       .|+++.-+|.+...++...|.+++.+|.+  +++.+|+++|+++|++
T Consensus       119 -~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  165 (394)
T 2ay1_A          119 -RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAA  165 (394)
T ss_dssp             -CEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHT
T ss_pred             -EEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHh
Confidence             35567789999999999999999999996  6789999999999874

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=97.83  E-value=7.7e-05  Score=67.94  Aligned_cols=89  Identities=7%  Similarity=-0.125  Sum_probs=71.7

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .++++.+.+|+.+..|.+-..       ..-+||+|||+++..++.+..+                   +.-.|+++..+
T Consensus        61 ~~lr~~la~~~~~~~~~~~~~-------~~i~~t~g~~~a~~~~~~~~~~-------------------~gd~vl~~~~~  114 (377)
T 3fdb_A           61 SLLSQATAEFYADRYGYQARP-------EWIFPIPDVVRGLYIAIDHFTP-------------------AQSKVIVPTPA  114 (377)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCG-------GGEEEESCHHHHHHHHHHHHSC-------------------TTCCEEEEESC
T ss_pred             HHHHHHHHHHHHHHhCCCCCH-------HHEEEeCChHHHHHHHHHHhcC-------------------CCCEEEEcCCC
Confidence            678888899999888865321       2589999999999988876421                   11135677889


Q ss_pred             cchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         250 HSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       250 H~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      |.++..++...|.+++.+|++++  +|+++|+++|++
T Consensus       115 ~~~~~~~~~~~g~~~~~~~~~~~--~d~~~l~~~l~~  149 (377)
T 3fdb_A          115 YPPFFHLLSATQREGIFIDATGG--INLHDVEKGFQA  149 (377)
T ss_dssp             CTHHHHHHHHHTCCEEEEECTTS--CCHHHHHHHHHT
T ss_pred             cHhHHHHHHHcCCEEEEccCCCC--CCHHHHHHHhcc
Confidence            99999999999999999999987  999999999875

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=97.83  E-value=2e-05  Score=71.84  Aligned_cols=85  Identities=15%  Similarity=0.197  Sum_probs=68.2

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+++++++|.++.        ...+||+|||+++..++.+..+                   +.-.|+++..+|.++.
T Consensus        71 ~l~~~la~~~g~~~~--------~~i~~~~g~t~a~~~~~~~~~~-------------------~gd~Vl~~~~~~~~~~  123 (367)
T 3euc_A           71 ALRAKLKEVMQVPAG--------MEVLLGNGSDEIISMLALAAAR-------------------PGAKVMAPVPGFVMYA  123 (367)
T ss_dssp             HHHHHHHHHHTCCTT--------CEEEEEEHHHHHHHHHHHHTCC-------------------TTCEEEEEESCSCCSC
T ss_pred             HHHHHHHHHhCCCCc--------ceEEEcCCHHHHHHHHHHHHcC-------------------CCCEEEEcCCCHHHHH
Confidence            455677888888321        2589999999999988876411                   1124667788999999


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .++...|.+++.||+++++.+|+++|+++|++
T Consensus       124 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~  155 (367)
T 3euc_A          124 MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAE  155 (367)
T ss_dssp             HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhc
Confidence            99999999999999999999999999999976

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=97.83  E-value=0.00016  Score=66.92  Aligned_cols=89  Identities=13%  Similarity=0.111  Sum_probs=69.7

Q ss_pred             CchhhHHHHHHHHHH-HHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         166 SPACTELEVVMLDWL-GKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l-~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      +|...++|+.    + ++++|..+          ..++|+|||+++..++.+..   +.               +.-.|+
T Consensus        35 ~~~~~~l~~~----~~a~~~g~~~----------~~v~~~sgt~al~~al~~l~---~~---------------~Gd~Vi   82 (377)
T 3ju7_A           35 GPINQRFEQT----IMSGFFQNRG----------AVTTVANATLGLMAAIQLKK---RK---------------KGKYAL   82 (377)
T ss_dssp             CHHHHHHHHH----HHHHTSTTCS----------EEEEESCHHHHHHHHHHHHS---CT---------------TCCEEE
T ss_pred             CHHHHHHHHH----HHHHHhCCCC----------eEEEeCCHHHHHHHHHHHcC---CC---------------CcCEEE
Confidence            5666667764    5 77888322          38999999999998887641   10               112577


Q ss_pred             ecCCCcchHHHHHHhcCCceEEeeCC-CCCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si~Kaa~~lg~~v~~Vp~d-~~~~md~~~L~~~i~~  286 (297)
                      ++..+|.+...++...|..++.|++| +++.+|+++|+++|..
T Consensus        83 ~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~  125 (377)
T 3ju7_A           83 MPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEE  125 (377)
T ss_dssp             EESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHH
T ss_pred             ECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhc
Confidence            89999999999999999999999998 5799999999999843

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=97.83  E-value=0.00016  Score=73.13  Aligned_cols=83  Identities=13%  Similarity=0.133  Sum_probs=66.2

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      +.-+.+++++|.+.          .-++|+|+|++|..++.+...                   +.-.|+++..+|+|+.
T Consensus       209 ~~ee~la~l~G~d~----------~i~~~~Gtt~a~~~~i~al~~-------------------~GD~Vlv~~~~h~s~~  259 (755)
T 2vyc_A          209 ESEKYAARVFGADR----------SWSVVVGTSGSNRTIMQACMT-------------------DNDVVVVDRNCHKSIE  259 (755)
T ss_dssp             HHHHHHHHHHTCSE----------EEEESSHHHHHHHHHHHHHCC-------------------TTCEEEEESSCCHHHH
T ss_pred             HHHHHHHHHhCCCc----------eEEECCcHHHHHHHHHHHhcC-------------------CCCEEEECCCchHHHH
Confidence            35578999999875          367788888999988887411                   1125778999999999


Q ss_pred             HHHHhcCCceEEeeCCCC-----CCc-----CHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDS-----YKL-----RGDALEAAIEE  286 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~-----~~m-----d~~~L~~~i~~  286 (297)
                      .++.+.|..++.++++.+     |.|     |+++|+++|++
T Consensus       260 ~~~~~~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~  301 (755)
T 2vyc_A          260 QGLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISE  301 (755)
T ss_dssp             HHHHHHCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHh
Confidence            999999999999998743     456     99999999986

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=97.82  E-value=3.8e-05  Score=70.34  Aligned_cols=105  Identities=17%  Similarity=0.169  Sum_probs=74.5

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +.+.+...+.. ...|...+...++++    .+++++|.+++         ..+||+|||+++..++.+..+        
T Consensus        43 v~~a~~~~~~~-~~~y~~~~~~~~l~~----~la~~~~~~~~---------~v~~~~g~~~a~~~~~~~~~~--------  100 (381)
T 1v2d_A           43 LLEAVRRALGR-QDQYAPPAGLPALRE----ALAEEFAVEPE---------SVVVTSGATEALYVLLQSLVG--------  100 (381)
T ss_dssp             HHHHHHHHTTT-SCSCCCTTCCHHHHH----HHHHHHTSCGG---------GEEEESSHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHHH-hcCCCCCCCCHHHHH----HHHHhcCCChh---------hEEEcCChHHHHHHHHHHhCC--------
Confidence            34444444443 223333333444554    55566787653         489999999999999887621        


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC---CCCCcCHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD---DSYKLRGDALEAAIE  285 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d---~~~~md~~~L~~~i~  285 (297)
                                 +.-.|++++.+|.++..+++..|.+++.||++   +++.+|+++|+++|+
T Consensus       101 -----------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~  150 (381)
T 1v2d_A          101 -----------PGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT  150 (381)
T ss_dssp             -----------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC
T ss_pred             -----------CCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC
Confidence                       11256778889999999999999999999998   578999999998874

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=97.82  E-value=2.7e-05  Score=71.12  Aligned_cols=90  Identities=13%  Similarity=0.090  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .....++.+.+++++|.+.+         ..++|+|||+++..++.+.+   ..               +.-.|+++..+
T Consensus        58 ~~~~~~l~~~la~~~g~~~~---------~v~~~~g~t~a~~~~~~~~~---~~---------------~gd~vl~~~~~  110 (390)
T 1elu_A           58 QQLIAQLRQALAETFNVDPN---------TITITDNVTTGCDIVLWGLD---WH---------------QGDEILLTDCE  110 (390)
T ss_dssp             HHHHHHHHHHHHHHTTSCGG---------GEEEESSHHHHHHHHHHHSC---CC---------------TTCEEEEETTC
T ss_pred             HHHHHHHHHHHHHHcCCCHH---------HEEEeCChHHHHHHHHhCCC---CC---------------CCCEEEEecCc
Confidence            34556788899999998753         48999999999999888763   10               11256778899


Q ss_pred             cchHHH----HHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678         250 HSSVER----AGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE  286 (297)
Q Consensus       250 H~Si~K----aa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~  286 (297)
                      |.+...    .+...|.+++.||++  +++.+|+++|+++|++
T Consensus       111 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~  153 (390)
T 1elu_A          111 HPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP  153 (390)
T ss_dssp             CHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT
T ss_pred             ccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC
Confidence            998654    467789999999998  6899999999988853

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=97.81  E-value=1.8e-05  Score=72.13  Aligned_cols=104  Identities=15%  Similarity=0.159  Sum_probs=76.0

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +.+.+...+...  .+...+...++|    +.+++++|.+           ..++|+|||+++..++.+.+   .     
T Consensus        21 ~~~~~~~~~~~~--~~~~~~~~~~l~----~~la~~~~~~-----------~~~~~~~gt~a~~~~~~~~~---~-----   75 (374)
T 3uwc_A           21 YLNDLREFIKTA--DFTLGAELEKFE----KRFAALHNAP-----------HAIGVGTGTDALAMSFKMLN---I-----   75 (374)
T ss_dssp             HHHHHHHHHHHT--CCSSCHHHHHHH----HHHHHHTTCS-----------EEEEESCHHHHHHHHHHHTT---C-----
T ss_pred             HHHHHHHHHHcC--CcccChhHHHHH----HHHHHHhCCC-----------cEEEeCCHHHHHHHHHHHcC---C-----
Confidence            445555554432  233344444444    5777788875           28999999999988887652   0     


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                                .+.-.|+++..+|++...++...|++++.||+++++.+|+++|+++|++
T Consensus        76 ----------~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~  124 (374)
T 3uwc_A           76 ----------GAGDEVITCANTFIASVGAIVQAGATPVLVDSENGYVIDPEKIEAAITD  124 (374)
T ss_dssp             ----------CTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCCT
T ss_pred             ----------CCCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCCC
Confidence                      1122577889999999999999999999999998999999999988754

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=97.81  E-value=0.00027  Score=65.77  Aligned_cols=100  Identities=15%  Similarity=0.155  Sum_probs=74.7

Q ss_pred             hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      ...++++.+.+|+.+.+|++...     .....++|+|||+++..++.+..+                   +.-.|+++.
T Consensus        84 g~~~lr~~la~~~~~~~g~~~~~-----~~~~i~~~~G~~~ai~~~~~~~~~-------------------~gd~Vl~~~  139 (428)
T 1iay_A           84 GLPEFRKAIAKFMEKTRGGRVRF-----DPERVVMAGGATGANETIIFCLAD-------------------PGDAFLVPS  139 (428)
T ss_dssp             CCHHHHHHHHHHHHHHTTTCSCC-----CTTSCEEEEHHHHHHHHHHHHHCC-------------------TTCEEEEES
T ss_pred             CcHHHHHHHHHHHHHhcCCCCCC-----ChhhEEEccChHHHHHHHHHHhCC-------------------CCCeEEEcc
Confidence            36789999999999888854100     012588999999999988887521                   111466788


Q ss_pred             CCcchHHHHHH-hcCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCC
Q psy1678         248 QAHSSVERAGL-LGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKG  291 (297)
Q Consensus       248 ~aH~Si~Kaa~-~lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G  291 (297)
                      .+|.++..++. ..|+.++.||.+.  .+.+|+++|+++|++....|
T Consensus       140 p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  186 (428)
T 1iay_A          140 PYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSN  186 (428)
T ss_dssp             SCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTT
T ss_pred             CCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcC
Confidence            89999887554 7899999999974  46899999999998765555

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=97.80  E-value=3.1e-05  Score=71.32  Aligned_cols=88  Identities=15%  Similarity=0.075  Sum_probs=68.5

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      ++...++|    +.+++++|.+           .+++|+|||+++..++.+++-                  .+.-.|++
T Consensus        55 ~~~~~~l~----~~la~~~~~~-----------~~i~~~~gt~al~~~l~~~~~------------------~~gd~vl~  101 (391)
T 3dr4_A           55 GRFIVEFE----KAFADYCGVK-----------HAIACNNGTTALHLALVAMGI------------------GPGDEVIV  101 (391)
T ss_dssp             SHHHHHHH----HHHHHHHTCS-----------EEEEESSHHHHHHHHHHHHTC------------------CTTCEEEE
T ss_pred             ChHHHHHH----HHHHHHhCCC-----------cEEEeCCHHHHHHHHHHHcCC------------------CCcCEEEE
Confidence            34444454    4666777775           289999999999999887621                  11225778


Q ss_pred             cCCCcchHHHHHHhcCCceEEeeCC-CCCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSSVERAGLLGGVTIRGLPAD-DSYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~Si~Kaa~~lg~~v~~Vp~d-~~~~md~~~L~~~i~~  286 (297)
                      +..+|++...++...|.+++.||+| +++.+|+++|+++|++
T Consensus       102 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~  143 (391)
T 3dr4_A          102 PSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITP  143 (391)
T ss_dssp             ESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCCT
T ss_pred             CCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcCC
Confidence            8999999999999999999999999 6789999999988753

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=97.80  E-value=0.00012  Score=67.11  Aligned_cols=90  Identities=12%  Similarity=-0.017  Sum_probs=68.5

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .....++.+++++++|.++           .+++++||++|..++.+..                   .+.-.|+++...
T Consensus        87 ~~~~~~l~~~la~~~~~~~-----------~i~~~sGt~a~~~~l~~~~-------------------~~gd~v~~~~~~  136 (399)
T 3tqx_A           87 QTIHKELEKDISEFLGTDD-----------TILYSSCFDANGGLFETLL-------------------GPEDAIISDELN  136 (399)
T ss_dssp             BHHHHHHHHHHHHHHTCSE-----------EEEESCHHHHHHTTHHHHC-------------------CTTCEEEEETTC
T ss_pred             chHHHHHHHHHHHHHCCCc-----------EEEECchHHHHHHHHHHhc-------------------CCCCEEEECCcc
Confidence            4455567788999998763           5667778999988776531                   112357789999


Q ss_pred             cchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCcc
Q psy1678         250 HSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIP  294 (297)
Q Consensus       250 H~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~P  294 (297)
                      |.++..++...|.+++.+|.     +|+++|++.|++...+|..+
T Consensus       137 ~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~  176 (399)
T 3tqx_A          137 HASIIDGIRLCKAQRYRYKN-----NAMGDLEAKLKEADEKGARF  176 (399)
T ss_dssp             CHHHHHHHHSCCSEEEEECT-----TCTTHHHHHHHHHHTTTCSS
T ss_pred             cHHHHHHHHHcCCceeEeCC-----CCHHHHHHHHHhhhccCCCc
Confidence            99999999999999999986     57889999998876654333

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=97.77  E-value=5.7e-05  Score=68.81  Aligned_cols=94  Identities=6%  Similarity=-0.007  Sum_probs=66.7

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      +|....+..++.+|+++++|.+.+.       ...++|+|||+++..++.+..+                  ..+ .|++
T Consensus        47 ~~~~~~~~~~~~~~la~~~g~~~~~-------~~i~~~~ggt~al~~~~~~~~~------------------~gd-~vi~  100 (376)
T 3f0h_A           47 TTEFSSTMLENEKFMLEYAKAPEGS-------KAVFMTCSSTGSMEAVVMNCFT------------------KKD-KVLV  100 (376)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCTTC-------EEEEESSCHHHHHHHHHHHHCC------------------TTC-CEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCc-------eEEEEcCChhHHHHHHHHhccC------------------CCC-eEEE
Confidence            4555567778999999999997531       1244489999999998876521                  012 2344


Q ss_pred             cCCCcchH--HHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         246 SDQAHSSV--ERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       246 s~~aH~Si--~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      +...+++.  .+.+...|..++.||++.++.+|+++|++.+.
T Consensus       101 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~  142 (376)
T 3f0h_A          101 IDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDN  142 (376)
T ss_dssp             EESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTT
T ss_pred             EeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhc
Confidence            44445543  24567789999999999999999999988653

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=97.76  E-value=0.00023  Score=65.33  Aligned_cols=101  Identities=14%  Similarity=0.014  Sum_probs=71.1

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEE--cCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCC
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVI--QGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA  239 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~--tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~  239 (297)
                      .|...+....+.+.+.+|+...-+.+-+       ...-+|  |+|||+++..++.+.+...                 +
T Consensus        64 ~y~~~~g~~~lr~~la~~~~~~~~~~~~-------~~~v~~~~~~g~~~a~~~~~~~~~~~~-----------------~  119 (396)
T 2q7w_A           64 NYLGIDGIPEFGRCTQELLFGKGSALIN-------DKRARTAQTPGGTGALRVAADFLAKNT-----------------S  119 (396)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHCTTCHHHH-------TTCEEEEEESHHHHHHHHHHHHHHHHS-----------------C
T ss_pred             CCCCCCCCHHHHHHHHHHHhcCCCCccc-------cccEEEEecccchhhHHHHHHHHHHhC-----------------C
Confidence            3433445667777777776543222100       014566  9999999999987764320                 1


Q ss_pred             ceEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678         240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE  286 (297)
Q Consensus       240 ~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~  286 (297)
                      .-.|++..-+|++...++...|.+++.+|.+  +++.+|+++|+++|++
T Consensus       120 gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  168 (396)
T 2q7w_A          120 VKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNE  168 (396)
T ss_dssp             CCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT
T ss_pred             CCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHh
Confidence            1146667789999999999999999999996  6789999999999864

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=97.76  E-value=9e-06  Score=77.08  Aligned_cols=130  Identities=10%  Similarity=-0.055  Sum_probs=82.4

Q ss_pred             HHHHHHHHHcCCCCCCCCccccccCCCCC-CHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccc
Q psy1678         114 VMSDIERVIMPGVTHWHSPKFHAYFPTAN-SYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLA  192 (297)
Q Consensus       114 il~~l~~~~~~~~~~~~~p~~~g~~~s~~-~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~  192 (297)
                      +++.+.++...+...|+.|.   |..+.. .....+ +  ..-+| ....++.....+....++.+++++ +|.++    
T Consensus         6 ~~~~l~~~~~~~~~~~~~p~---h~~~~~~~~~~~~-~--~~d~~-~~~~~d~~~~~~~~~~~~~~~la~-~g~~~----   73 (446)
T 2x3l_A            6 ILNKLESLNQEEAISLHVPG---HKNMTIGHLSQLS-M--TMDKT-EIPGLDDLHHPEEVILKSMKQVEK-HSDYD----   73 (446)
T ss_dssp             HHHHHHHHHHTTCEEESSST---TTTTTSSSGGGCC-G--GGCCC-SCTTSCCTTSCSSHHHHHHHHHCS-CTTEE----
T ss_pred             HHHHHHHHHcCCCeeeeCCC---cCCCCcccchhhh-h--hcccc-CCCCCccccCcchHHHHHHHHHHh-cCCCc----
Confidence            56667777766666777773   332220 101111 1  11122 122222222223345678889999 99863    


Q ss_pred             cCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeC--C
Q psy1678         193 CSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPA--D  270 (297)
Q Consensus       193 ~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~--d  270 (297)
                            ..+||+|||++|..++.++..                   +.-.|+++..+|.|+.+++.+.|..++.|++  |
T Consensus        74 ------~v~~~~G~t~a~~~~~~a~~~-------------------~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~  128 (446)
T 2x3l_A           74 ------GYFLVNGTTSGILSVIQSFSQ-------------------KKGDILMARNVHKSVLHALDISQQEGHFIETHQS  128 (446)
T ss_dssp             ------EEEESSHHHHHHHHHHHTTTT-------------------SSSCEEECTTCCHHHHHHHHHHTCCEEECEEEEC
T ss_pred             ------eEEEeCCHHHHHHHHHHHhcC-------------------CCCEEEEecCccHHHHHHHHHcCCeEEEEeCeec
Confidence                  378999999999999987611                   1124778999999999999999999999998  7


Q ss_pred             CC----CCcCHHHH
Q psy1678         271 DS----YKLRGDAL  280 (297)
Q Consensus       271 ~~----~~md~~~L  280 (297)
                      ++    +.+|+++|
T Consensus       129 ~~~~~~~~~d~~~l  142 (446)
T 2x3l_A          129 PLTNHYNKVNLSRL  142 (446)
T ss_dssp             TTTSSEEEEEC---
T ss_pred             cccCcCCCCCHHHH
Confidence            65    68999887

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=97.75  E-value=9.6e-05  Score=68.10  Aligned_cols=87  Identities=16%  Similarity=0.105  Sum_probs=66.3

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      +...++++.+.+|+    |.+++         ..++|+|||+++..++.+..+                   +.-.|++.
T Consensus        74 ~~~~~l~~~la~~~----g~~~~---------~v~~~~g~~~al~~~~~~~~~-------------------~gd~Vl~~  121 (397)
T 2zyj_A           74 EGYAPLRAFVAEWI----GVRPE---------EVLITTGSQQALDLVGKVFLD-------------------EGSPVLLE  121 (397)
T ss_dssp             TCCHHHHHHHHHHH----TSCGG---------GEEEESHHHHHHHHHHHHHCC-------------------TTCEEEEE
T ss_pred             CCCHHHHHHHHHHh----CCChh---------hEEEeccHHHHHHHHHHHhCC-------------------CCCEEEEe
Confidence            34556666555554    76543         589999999999888876421                   11246677


Q ss_pred             CCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         247 DQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       247 ~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ..+|.+...++...|.+++.||.++++ +|+++|+++|++
T Consensus       122 ~p~y~~~~~~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~  160 (397)
T 2zyj_A          122 APSYMGAIQAFRLQGPRFLTVPAGEEG-PDLDALEEVLKR  160 (397)
T ss_dssp             ESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHcCCEEEecCcCCCC-CCHHHHHHHHhh
Confidence            789999999999999999999998766 999999999975

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=97.75  E-value=0.00013  Score=66.93  Aligned_cols=111  Identities=9%  Similarity=-0.018  Sum_probs=79.7

Q ss_pred             HHHHHHHhccccccccccCchhhH-HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIACIGFTWIASPACTE-LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~-iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      +.+.+...++.....|...  ... +++.+.+|+.+..|++.+.       ..-++|+|||+++..++.+..+       
T Consensus        46 v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~-------~~v~~t~g~~~al~~~~~~l~~-------  109 (390)
T 1d2f_A           46 IIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDS-------QTVVYGPSVIYMVSELIRQWSE-------  109 (390)
T ss_dssp             HHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCG-------GGEEEESCHHHHHHHHHHHSSC-------
T ss_pred             HHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCH-------HHEEEcCCHHHHHHHHHHHhcC-------
Confidence            4455555554322233322  567 8889999999988854211       2589999999999888876421       


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC---CCcCHHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS---YKLRGDALEAAIEE  286 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~---~~md~~~L~~~i~~  286 (297)
                                  +.-.|++...+|.++..++...|.+++.||++.+   +.+|+++|+++|++
T Consensus       110 ------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~  160 (390)
T 1d2f_A          110 ------------TGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK  160 (390)
T ss_dssp             ------------TTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS
T ss_pred             ------------CCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc
Confidence                        1124667788999999999999999999999754   36999999998863

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=97.74  E-value=7.3e-05  Score=68.57  Aligned_cols=82  Identities=15%  Similarity=0.051  Sum_probs=65.4

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +.+.+++++|.+           ..++|+|||+++..++.+.+   .               .+.-.|+++..+|++..+
T Consensus        44 l~~~la~~~~~~-----------~~~~~~~gt~al~~~~~~~~---~---------------~~gd~Vl~~~~~~~~~~~   94 (393)
T 1mdo_A           44 LEAAFCRLTGNQ-----------YAVAVSSATAGMHIALMALG---I---------------GEGDEVITPSMTWVSTLN   94 (393)
T ss_dssp             HHHHHHHHHCCS-----------EEEEESCHHHHHHHHHHHTT---C---------------CTTCEEEEESSSCHHHHH
T ss_pred             HHHHHHHHhCCC-----------cEEEecChHHHHHHHHHHcC---C---------------CCCCEEEeCCCccHhHHH
Confidence            445666777764           38999999999999988752   1               012257788999999999


Q ss_pred             HHHhcCCceEEeeCCCC-CCcCHHHHHHHHHH
Q psy1678         256 AGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  286 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~~-~~md~~~L~~~i~~  286 (297)
                      ++...|++++.||+|++ +.+|+++|+++|++
T Consensus        95 ~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~  126 (393)
T 1mdo_A           95 MIVLLGANPVMVDVDRDTLMVTPEHIEAAITP  126 (393)
T ss_dssp             HHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT
T ss_pred             HHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC
Confidence            99999999999999875 78999999998864

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=97.74  E-value=8.7e-05  Score=68.18  Aligned_cols=110  Identities=13%  Similarity=0.054  Sum_probs=75.8

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +.+.+...+......+........+++.+.+|+.+.+|.+-..       ..-+||+|||+++..++.+..+        
T Consensus        49 v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------~~v~~t~g~~~al~~~~~~l~~--------  113 (391)
T 3h14_A           49 AVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDP-------GRVVITPGSSGGFLLAFTALFD--------  113 (391)
T ss_dssp             HHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCG-------GGEEEESSHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCH-------HHEEEecChHHHHHHHHHHhcC--------
Confidence            3445555554433344444446788999999999998865321       2589999999999988776421        


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC--CCcCHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAA  283 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~--~~md~~~L~~~  283 (297)
                                 +.-.|+++..+|.+...++..+|.+++.||++++  +.+|+++|+++
T Consensus       114 -----------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  160 (391)
T 3h14_A          114 -----------SGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL  160 (391)
T ss_dssp             -----------TTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS
T ss_pred             -----------CCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc
Confidence                       1124667888999999999999999999999864  47899988765

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=97.74  E-value=0.00019  Score=66.38  Aligned_cols=120  Identities=8%  Similarity=-0.071  Sum_probs=77.6

Q ss_pred             HHHHHHHhc-c-ccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEE--cCChhHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSI-A-CIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVI--QGTASEATLVALLGAKAKTMQ  223 (297)
Q Consensus       148 l~d~l~~~l-N-~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~--tsGGT~anl~Al~~AR~~~~~  223 (297)
                      +.+.+...+ + .....|...+....+++.+.+|+....|.+-.       ...-+|  |+|||+|+..++..++..  .
T Consensus        53 v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~-------~~~v~~~~t~gg~~a~~~~~~~~~~~--~  123 (412)
T 1ajs_A           53 VRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQ-------EKRVGGVQSLGGTGALRIGAEFLARW--Y  123 (412)
T ss_dssp             HHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-------TTCEEEEEEEHHHHHHHHHHHHHHHH--S
T ss_pred             HHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccC-------CCcEEEEECCCcHHHHHHHHHHHHHh--C
Confidence            444455444 2 12223433445567777777777554443201       025888  999999999997655432  0


Q ss_pred             HHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCc-eEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678         224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVT-IRGLPAD--DSYKLRGDALEAAIEE  286 (297)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~-v~~Vp~d--~~~~md~~~L~~~i~~  286 (297)
                          .|..      ..+-.|+++.-+|.+...++...|.+ ++.+|.+  +++.+|+++|+++|++
T Consensus       124 ----~g~~------~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~  179 (412)
T 1ajs_A          124 ----NGTN------NKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN  179 (412)
T ss_dssp             ----SSSS------CCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHH
T ss_pred             ----cCcC------CCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHh
Confidence                0100      00023566778999999999999999 9999994  5789999999999975

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=97.73  E-value=0.00015  Score=66.27  Aligned_cols=114  Identities=9%  Similarity=0.006  Sum_probs=79.9

Q ss_pred             HHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       148 l~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      +.+.+...+... ...|...+....+++.+.+|+.+.+|.+-+.      ....+||+|||+++..++.+..+       
T Consensus        43 v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~------~~~v~~~~g~~~a~~~~~~~l~~-------  109 (376)
T 2dou_A           43 PLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDP------RREALALIGSQEGLAHLLLALTE-------  109 (376)
T ss_dssp             HHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCT------TTSEEEESSHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CccEEEcCCcHHHHHHHHHHhcC-------
Confidence            344555555332 1122222356678888888888888986210      01589999999999988876421       


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                                  +.-.|++...+|.+...++...|.+++.||+++.+.+|+++|+++|..
T Consensus       110 ------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~  157 (376)
T 2dou_A          110 ------------PEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVWR  157 (376)
T ss_dssp             ------------TTCEEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHHH
T ss_pred             ------------CCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhcc
Confidence                        112466788899999999999999999999955567999999998863

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=97.72  E-value=0.00011  Score=68.52  Aligned_cols=101  Identities=10%  Similarity=0.030  Sum_probs=75.5

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |.......++++.+.+|+....|++-+.       ..-+||+|||+++..++.+...  ..    .|         .+..
T Consensus        78 y~~~~g~~~lr~~la~~~~~~~g~~~~~-------~~i~~t~g~t~al~~~~~~l~~--~~----~g---------d~~~  135 (437)
T 3g0t_A           78 YPNLDGLPELKQEASRFAKLFVNIDIPA-------RACVPTVGSMQGCFVSFLVANR--TH----KN---------REYG  135 (437)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHCCCCCG-------GGEEEESHHHHHHHHHHHHHTT--SC----TT---------CSCC
T ss_pred             CCCCCChHHHHHHHHHHHHHhhCCCCCc-------ccEEEeCCHHHHHHHHHHHHhc--CC----CC---------CccE
Confidence            3333345788999999999888875321       2589999999999998877530  00    01         1113


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIE  285 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~  285 (297)
                      |+++..+|.++..++...|.+++.||+++ .+.+|+++|+++|+
T Consensus       136 Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~  179 (437)
T 3g0t_A          136 TLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQ  179 (437)
T ss_dssp             EEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHT
T ss_pred             EEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHh
Confidence            66678899999999999999999999974 45799999999984

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=97.70  E-value=0.00018  Score=67.79  Aligned_cols=97  Identities=11%  Similarity=0.015  Sum_probs=64.9

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |...+...+++    +++++++|.+           ..+||+|||+||..|+.+++++...    .|        ..+..
T Consensus        72 y~~~~~~~~l~----~~la~~~~~~-----------~v~~t~ggt~A~~~al~~~~~~~~~----~G--------d~~~~  124 (467)
T 1ax4_A           72 YAGSRNYYDLK----DKAKELFNYD-----------YIIPAHQGRGAENILFPVLLKYKQK----EG--------KAKNP  124 (467)
T ss_dssp             SSSCHHHHHHH----HHHHHHHCCC-----------EEEEESSHHHHHHHHHHHHHHHHHH----TT--------CCSSC
T ss_pred             cccCccHHHHH----HHHHHHcCCC-----------cEEEcCCcHHHHHHHHHHHHHhhcc----CC--------Cccce
Confidence            44444444444    5677777764           3899999999999999998764211    11        11112


Q ss_pred             EEecCCCcchH-HHHHHhcCCceEEeeCC----------CCCCcCHHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSV-ERAGLLGGVTIRGLPAD----------DSYKLRGDALEAAIEED  287 (297)
Q Consensus       243 i~~s~~aH~Si-~Kaa~~lg~~v~~Vp~d----------~~~~md~~~L~~~i~~~  287 (297)
                      |+++ ..||.. ..+....|..++.++.+          .++.+|+++|+++|++.
T Consensus       125 viv~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~  179 (467)
T 1ax4_A          125 VFIS-NFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQH  179 (467)
T ss_dssp             EEEE-SSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHH
T ss_pred             EEEe-ccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhc
Confidence            4455 677554 56777888888776543          15789999999999863

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=97.69  E-value=0.00015  Score=67.30  Aligned_cols=114  Identities=9%  Similarity=0.026  Sum_probs=81.7

Q ss_pred             HHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       148 l~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      +.+.+...+... ...|...+....+++.+.+|+.+.+|.+-+.      ....++|+|||+++..++.+..+       
T Consensus        65 v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~------~~~v~~t~G~~~al~~~~~~l~~-------  131 (404)
T 2o1b_A           65 IIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDK------EDEVCILYGTKNGLVAVPTCVIN-------  131 (404)
T ss_dssp             HHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCT------TTSEEEESSHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC------cccEEEcCCcHHHHHHHHHHhcC-------
Confidence            344555544322 2223333456789999999999988986210      01589999999999988886421       


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                                  +.-.|++...+|.++..++...|.+++.||.++ .+.+|+++|+++|+.
T Consensus       132 ------------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~  180 (404)
T 2o1b_A          132 ------------PGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQIID  180 (404)
T ss_dssp             ------------TTCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH
T ss_pred             ------------CCCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhcc
Confidence                        112466778899999999999999999999986 456999999999863

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=97.68  E-value=0.00023  Score=66.30  Aligned_cols=85  Identities=16%  Similarity=0.073  Sum_probs=67.0

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      +...++|    +.+++++|.+           ..++|+|||+++..++.+.+    .     |           -.|+++
T Consensus        52 ~~~~~l~----~~la~~~~~~-----------~v~~~~ggt~al~~~l~~l~----~-----g-----------d~Vlv~   96 (424)
T 2po3_A           52 PLVREFE----ERVAGLAGVR-----------HAVATCNATAGLQLLAHAAG----L-----T-----------GEVIMP   96 (424)
T ss_dssp             HHHHHHH----HHHHHHHTSS-----------EEEEESCHHHHHHHHHHHHT----C-----C-----------SEEEEE
T ss_pred             HHHHHHH----HHHHHHhCCC-----------eEEEeCCHHHHHHHHHHHcC----C-----C-----------CEEEEC
Confidence            4444454    4566666664           38999999999999988752    0     1           147788


Q ss_pred             CCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         247 DQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       247 ~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      ..+|.+...++...|+.++.||+|+ ++.+|+++|+++|++
T Consensus        97 ~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~  137 (424)
T 2po3_A           97 SMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVTP  137 (424)
T ss_dssp             SSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCCT
T ss_pred             CCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhCc
Confidence            9999999999999999999999986 789999999988753

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=97.67  E-value=0.00032  Score=64.31  Aligned_cols=98  Identities=14%  Similarity=0.035  Sum_probs=74.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCC-ccccccCCCCC-CeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         168 ACTELEVVMLDWLGKMLDLP-KEFLACSGGKG-GGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~llg~~-~~~~~~~~~~~-~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      ...++++.+.+|+.+.+|.+ -+       .. .-++|+|||+++..++.+.++.        |.      ...+-.|++
T Consensus        67 g~~~lr~~la~~l~~~~g~~~~~-------~~~~i~~t~g~~~al~~~~~~~~~~--------g~------~~~~d~vl~  125 (396)
T 3jtx_A           67 GLPELRQACANWLKRRYDGLTVD-------ADNEILPVLGSREALFSFVQTVLNP--------VS------DGIKPAIVS  125 (396)
T ss_dssp             CCHHHHHHHHHHHHHHTTTCCCC-------TTTSEEEESSHHHHHHHHHHHHCCC-----------------CCCCEEEE
T ss_pred             CcHHHHHHHHHHHHHhcCCCCCC-------CCCeEEEcCCcHHHHHHHHHHHhCC--------CC------ccCCCEEEE
Confidence            35688899999999999975 11       12 5899999999999988775220        00      000135677


Q ss_pred             cCCCcchHHHHHHhcCCceEEeeCCCC-CCcCHHHHHHHHHH
Q psy1678         246 SDQAHSSVERAGLLGGVTIRGLPADDS-YKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~Si~Kaa~~lg~~v~~Vp~d~~-~~md~~~L~~~i~~  286 (297)
                      +.-+|.++..++...|.+++.||++++ +.+|+++|+++|.+
T Consensus       126 ~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~  167 (396)
T 3jtx_A          126 PNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWK  167 (396)
T ss_dssp             EESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH
T ss_pred             cCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhcc
Confidence            888999999999999999999999754 47899999998875

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=97.66  E-value=0.00026  Score=64.40  Aligned_cols=107  Identities=13%  Similarity=-0.013  Sum_probs=77.5

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +.+.+...+......|...+...++++.+.+|+.+..|.+-+.       ...++|+|||+++..++.+..+        
T Consensus        47 v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~-------~~v~~~~g~~~a~~~~~~~~~~--------  111 (370)
T 2z61_A           47 IVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIP-------DNIIITGGSSLGLFFALSSIID--------  111 (370)
T ss_dssp             HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCG-------GGEEEESSHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCCh-------hhEEECCChHHHHHHHHHHhcC--------
Confidence            3444444443322234334456789999999999988865321       2589999999999999887521        


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                                 +.-.|++++.+|.++..++...|.+++.||      +|+++|+++|++
T Consensus       112 -----------~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~------~d~~~l~~~l~~  153 (370)
T 2z61_A          112 -----------DGDEVLIQNPCYPCYKNFIRFLGAKPVFCD------FTVESLEEALSD  153 (370)
T ss_dssp             -----------TTCEEEEESSCCTHHHHHHHHTTCEEEEEC------SSHHHHHHHCCS
T ss_pred             -----------CCCEEEEeCCCchhHHHHHHHcCCEEEEeC------CCHHHHHHhccc
Confidence                       112567788999999999999999999888      899999888753

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=97.65  E-value=0.00038  Score=66.81  Aligned_cols=106  Identities=10%  Similarity=-0.044  Sum_probs=78.3

Q ss_pred             cccccCchhhHHHHHHHHHHHHHcC-CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCC
Q psy1678         161 FTWIASPACTELEVVMLDWLGKMLD-LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA  239 (297)
Q Consensus       161 ~~~~~~p~~~~iE~~v~~~l~~llg-~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~  239 (297)
                      ..|..+.....+.+.+.+|+.+..| ++-+.       ..-++|+|+|+++.+++.+..+          +     +..+
T Consensus       123 ~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~-------~~i~~t~G~~~ai~~~~~~l~~----------~-----gd~~  180 (498)
T 3ihj_A          123 GSYSASQGVNCIREDVAAYITRRDGGVPADP-------DNIYLTTGASDGISTILKILVS----------G-----GGKS  180 (498)
T ss_dssp             -----CCSCHHHHHHHHHHHHHHTTTCCCCG-------GGEEEESSHHHHHHHHHHHHCC----------C-----CGGG
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhcCCCCCCc-------ccEEEcCCHHHHHHHHHHHHcC----------C-----CCCC
Confidence            4456666677899999999999985 64211       2589999999999888775311          0     0001


Q ss_pred             ceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHHHH
Q psy1678         240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEEDL  288 (297)
Q Consensus       240 ~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~  288 (297)
                      +-.|+++.-.|.++..++...|..++.+++|+  ++.+|+++|+++|++..
T Consensus       181 ~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~  231 (498)
T 3ihj_A          181 RTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAK  231 (498)
T ss_dssp             SEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhh
Confidence            23677888999999999999999999999986  46999999999998753

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=97.65  E-value=0.0001  Score=66.71  Aligned_cols=119  Identities=11%  Similarity=-0.005  Sum_probs=76.3

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHhcc-ccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHH
Q psy1678         131 SPKFHAYFPTANSYPAIVADILSDSIA-CIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEA  209 (297)
Q Consensus       131 ~p~~~g~~~s~~~~~svl~d~l~~~lN-~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~a  209 (297)
                      +..|+|.-..+ ....++.+++..... .....+...|...++|    +++++++|.+.           .++++|||++
T Consensus        11 ~~~~l~~~~~p-~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~----~~la~~~~~~~-----------~i~~~~G~~a   74 (357)
T 3lws_A           11 QTTGQISGHGK-RNVGVLKTAFAAVADEMASDQYGTGAIIEPFE----QKFADVLGMDD-----------AVFFPSGTMA   74 (357)
T ss_dssp             TCSEESSBSSC-CBHHHHHHHHTTSCTTCBCEETTEETTHHHHH----HHHHHHHTCSE-----------EEEESCHHHH
T ss_pred             hhcccccCCCC-CCHHHHHHHHHHhhcccCcccccCChHHHHHH----HHHHHHhCCCc-----------EEEecCcHHH
Confidence            34566665544 344555555543211 1112233345555555    57888888753           6888999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH---HHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678         210 TLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER---AGLLGGVTIRGLPADDSYKLRGDALEAA  283 (297)
Q Consensus       210 nl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K---aa~~lg~~v~~Vp~d~~~~md~~~L~~~  283 (297)
                      |..++.+....        +         .+.+|+++...|++..+   .+.+.|..++.||. +++.+|+++|+++
T Consensus        75 ~~~al~~~~~~--------g---------d~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~  133 (357)
T 3lws_A           75 QQVALRIWSDE--------T---------DNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA-ADRLMTLDEIKAL  133 (357)
T ss_dssp             HHHHHHHHHHH--------H---------TCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC-TTSCCCHHHHHTC
T ss_pred             HHHHHHHHhhc--------C---------CCcEEEecccceeeeeccchhhhccCcEEEEecC-CCCCcCHHHHhcC
Confidence            99988876432        0         12256778889988866   35566888888885 5678999999876

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=97.64  E-value=5.9e-05  Score=70.01  Aligned_cols=109  Identities=11%  Similarity=0.038  Sum_probs=79.5

Q ss_pred             HHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhh
Q psy1678         149 ADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEA  228 (297)
Q Consensus       149 ~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~  228 (297)
                      .+.+ ..+......|...+....+++.+.+|+....|++.+.       ...++|+|||+++..++.+...         
T Consensus        62 ~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~-------~~v~~~~g~t~a~~~~~~~~~~---------  124 (409)
T 2gb3_A           62 FERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKP-------ENVLVTNGGSEAILFSFAVIAN---------  124 (409)
T ss_dssp             HHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCG-------GGEEEESHHHHHHHHHHHHHCC---------
T ss_pred             HHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCH-------HHEEEeCCHHHHHHHHHHHhCC---------
Confidence            4444 5554433344444557889999999999988865321       2589999999999999887511         


Q ss_pred             CCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHH
Q psy1678         229 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE  285 (297)
Q Consensus       229 ~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~  285 (297)
                                +.-.|++++.+|+++..++...|.+++.||+++  .+.+ +++|+++|+
T Consensus       125 ----------~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~  172 (409)
T 2gb3_A          125 ----------PGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN  172 (409)
T ss_dssp             ----------TTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCC
T ss_pred             ----------CCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhC
Confidence                      112567788999999999999999999999985  4455 777777764

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=97.64  E-value=0.00014  Score=66.24  Aligned_cols=111  Identities=9%  Similarity=-0.048  Sum_probs=77.7

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCC--ccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLP--KEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRV  225 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~--~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~  225 (297)
                      +.+.+...+. ....|........+++.+.+|+.+.+|.+  ++         .-+||+|||+++..++.+..+.     
T Consensus        41 v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~---------~i~~t~g~~~al~~~~~~~~~~-----  105 (376)
T 3ezs_A           41 IQDALKNHTH-SLNIYPKSAFEESLRAAQRGFFKRRFKIELKEN---------ELISTLGSREVLFNFPSFVLFD-----  105 (376)
T ss_dssp             HHHHHHTTGG-GGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGG---------GEEEESSSHHHHHHHHHHHTTT-----
T ss_pred             HHHHHHHhhh-hcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHH---------HEEECcCcHHHHHHHHHHHcCC-----
Confidence            3444444442 22233333345788999999999999983  32         5899999999999988775210     


Q ss_pred             HhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         226 KEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       226 ~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                                  ...-.|++...+|.++..++...|.+++.+|.++++.+++ +|++++.+
T Consensus       106 ------------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~~  153 (376)
T 3ezs_A          106 ------------YQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP-SLNEKELQ  153 (376)
T ss_dssp             ------------CSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC-CCCHHHHH
T ss_pred             ------------CCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch-hHHhhhcc
Confidence                        0012566788999999999999999999999987655666 66666654

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=97.63  E-value=0.00023  Score=65.44  Aligned_cols=83  Identities=13%  Similarity=0.087  Sum_probs=68.3

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ...+..++.+++++++|.+           ..++|+|||+++..++.+..+                   +.-.|+++..
T Consensus        86 ~~~~~~~l~~~la~~~g~~-----------~v~~~~ggt~a~~~~~~~~~~-------------------~gd~V~~~~p  135 (398)
T 3a2b_A           86 TLDIHVELEEKLSAYVGKE-----------AAILFSTGFQSNLGPLSCLMG-------------------RNDYILLDER  135 (398)
T ss_dssp             CCHHHHHHHHHHHHHHTCS-----------EEEEESSHHHHHHHHHHHSSC-------------------TTCEEEEETT
T ss_pred             CcHHHHHHHHHHHHHhCCC-----------cEEEECCHHHHHHHHHHHHhC-------------------CCCEEEECCc
Confidence            3466677889999999974           389999999999998887521                   1225778899


Q ss_pred             CcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         249 AHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       249 aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .|.+...++...|.+++.||+     +|+++|++.|++
T Consensus       136 ~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~  168 (398)
T 3a2b_A          136 DHASIIDGSRLSFSKVIKYGH-----NNMEDLRAKLSR  168 (398)
T ss_dssp             CCHHHHHHHHHSSSEEEEECT-----TCHHHHHHHHHT
T ss_pred             cCHHHHHHHHHcCCceEEeCC-----CCHHHHHHHHHh
Confidence            999999999999999999987     689999998875

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=97.62  E-value=0.00032  Score=64.39  Aligned_cols=94  Identities=10%  Similarity=-0.002  Sum_probs=73.0

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      .....+.+.+.+|+....|.+-+.       ..-++|+|||+++..++.+..    .               +.-.|+++
T Consensus        68 ~g~~~lr~~ia~~~~~~~g~~~~~-------~~i~~t~g~~~al~~~~~~l~----~---------------~gd~Vlv~  121 (385)
T 1b5p_A           68 AGIPELREALAEKFRRENGLSVTP-------EETIVTVGGSQALFNLFQAIL----D---------------PGDEVIVL  121 (385)
T ss_dssp             TCCHHHHHHHHHHHHHTTCCCCCG-------GGEEEESHHHHHHHHHHHHHC----C---------------TTCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCh-------HHEEEcCChHHHHHHHHHHhc----C---------------CCCEEEEc
Confidence            346788888999999888864210       158999999999998887641    1               11246677


Q ss_pred             CCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         247 DQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       247 ~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                      .-+|.++..++...|..++.||+++  ++.+|+++|+++|.+
T Consensus       122 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  163 (385)
T 1b5p_A          122 SPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP  163 (385)
T ss_dssp             ESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT
T ss_pred             CCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC
Confidence            7899999999999999999999985  568999999988753

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.0001  Score=69.51  Aligned_cols=113  Identities=12%  Similarity=0.062  Sum_probs=82.1

Q ss_pred             HHHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHH
Q psy1678         147 IVADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRV  225 (297)
Q Consensus       147 vl~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~  225 (297)
                      .+.+.+...+... ...|........+++.+.+|+.+.+|.+-+.       ...++|+|||+++..++.+..+      
T Consensus        74 ~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~-------~~v~~t~G~~~al~~~~~~l~~------  140 (447)
T 3b46_A           74 FAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKA-------ENVTVTTGANEGILSCLMGLLN------  140 (447)
T ss_dssp             HHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCG-------GGEEEESHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCh-------hhEEEeCCHHHHHHHHHHHHcC------
Confidence            3455555555542 2234333346788889999999888864211       1589999999999999887521      


Q ss_pred             HhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC------------CCCcCHHHHHHHHH
Q psy1678         226 KEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD------------SYKLRGDALEAAIE  285 (297)
Q Consensus       226 ~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~------------~~~md~~~L~~~i~  285 (297)
                                   +.-.|++++-.|.+...++...|..++.||+++            ++.+|+++|+++|.
T Consensus       141 -------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  199 (447)
T 3b46_A          141 -------------AGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT  199 (447)
T ss_dssp             -------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC
T ss_pred             -------------CCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc
Confidence                         112466777899999999999999999999865            46899999998875

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=97.61  E-value=8.1e-05  Score=67.65  Aligned_cols=82  Identities=9%  Similarity=-0.041  Sum_probs=66.4

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+.+++++|.+.+         .-++|+|||+++..++.+..+                   +.-.|+++..+|.++.
T Consensus        69 ~lr~~la~~~~~~~~---------~v~~~~g~~~a~~~~~~~l~~-------------------~gd~vl~~~~~~~~~~  120 (365)
T 3get_A           69 ELKSTLAQKYKVQNE---------NIIIGAGSDQVIEFAIHSKLN-------------------SKNAFLQAGVTFAMYE  120 (365)
T ss_dssp             HHHHHHHHHHTCCGG---------GEEEESSHHHHHHHHHHHHCC-------------------TTCEEEECSSCCTHHH
T ss_pred             HHHHHHHHHhCCCcc---------eEEECCCHHHHHHHHHHHHhC-------------------CCCEEEEeCCChHHHH
Confidence            455677888888654         589999999999988876411                   1125677889999999


Q ss_pred             HHHHhcCCceEEeeC-CCCCCcCHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPA-DDSYKLRGDALEAAIE  285 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~-d~~~~md~~~L~~~i~  285 (297)
                      .++...|.+++.||+ ++++ +|+++|+++|+
T Consensus       121 ~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~  151 (365)
T 3get_A          121 IYAKQCGAKCYKTQSITHNL-DEFKKLYETHK  151 (365)
T ss_dssp             HHHHHHTCEEEECSSSSCCH-HHHHHHHHHTT
T ss_pred             HHHHHcCCEEEEEecCCCCC-CCHHHHHHHhC
Confidence            999999999999999 6788 99999999886

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=97.60  E-value=0.00017  Score=66.88  Aligned_cols=99  Identities=9%  Similarity=0.061  Sum_probs=75.2

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |........+++.+.+|+.+.+|++-..      ...-+||+|||+++..++.+..+                   +.-.
T Consensus        63 y~~~~g~~~lr~~la~~~~~~~g~~~~~------~~~i~~~~g~~~a~~~~~~~~~~-------------------~gd~  117 (422)
T 3fvs_A           63 YTKTFGYPPLTKILASFFGELLGQEIDP------LRNVLVTVGGYGALFTAFQALVD-------------------EGDE  117 (422)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHTCCCCH------HHHEEEESHHHHHHHHHHHHHCC-------------------TTCE
T ss_pred             CCCCCCCHHHHHHHHHHHHHhhCCCCCC------CCcEEEECChHHHHHHHHHHHcC-------------------CCCE
Confidence            3333445788889999999999976210      01489999999999998876511                   1124


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEeeCCC------------CCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGLPADD------------SYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~------------~~~md~~~L~~~i~~  286 (297)
                      |+++..+|.++..++...|.+++.+|++.            ++++|+++|++++++
T Consensus       118 vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~  173 (422)
T 3fvs_A          118 VIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS  173 (422)
T ss_dssp             EEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT
T ss_pred             EEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCC
Confidence            66778899999999999999999999986            447999999988753

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=97.60  E-value=8.6e-05  Score=67.18  Aligned_cols=80  Identities=15%  Similarity=0.049  Sum_probs=66.3

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+++++++|.+++         .-+||+|||+++..++.+.      .                 .|+++..+|.++.
T Consensus        65 ~l~~~la~~~~~~~~---------~i~~~~g~t~al~~~~~~~------d-----------------~vi~~~~~~~~~~  112 (361)
T 3ftb_A           65 RLNKSIENYLKLKDI---------GIVLGNGASEIIELSISLF------E-----------------KILIIVPSYAEYE  112 (361)
T ss_dssp             HHHHHHHHHHTCCSC---------EEEEESSHHHHHHHHHTTC------S-----------------EEEEEESCCTHHH
T ss_pred             HHHHHHHHHhCCCcc---------eEEEcCCHHHHHHHHHHHc------C-----------------cEEEecCChHHHH
Confidence            455677777787543         5899999999999888765      1                 3667788999999


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .++...|.+++.+|+++++.+++++|+++|++
T Consensus       113 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~  144 (361)
T 3ftb_A          113 INAKKHGVSVVFSYLDENMCIDYEDIISKIDD  144 (361)
T ss_dssp             HHHHHTTCEEEEEECCTTSCCCHHHHHHHTTT
T ss_pred             HHHHHcCCeEEEeecCcccCCCHHHHHHhccC
Confidence            99999999999999999999999999988864

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=97.55  E-value=0.00022  Score=65.90  Aligned_cols=82  Identities=15%  Similarity=-0.016  Sum_probs=65.3

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +.+.+++++|.+.           .++++|||+++..++.+.+   .               .+.-.|+++..+|+++.+
T Consensus        68 l~~~la~~~~~~~-----------~v~~~~Gt~a~~~~l~~~~---~---------------~~gd~vl~~~~~~~~~~~  118 (399)
T 2oga_A           68 FEAEFAAYCETDH-----------AVGVNSGMDALQLALRGLG---I---------------GPGDEVIVPSHTYIASWL  118 (399)
T ss_dssp             HHHHHHHHTTSSE-----------EEEESCHHHHHHHHHHHTT---C---------------CTTCEEEEESSSCTHHHH
T ss_pred             HHHHHHHHHCCCe-----------EEEecCHHHHHHHHHHHhC---C---------------CCcCEEEECCCccHHHHH
Confidence            4456777788752           7899999999999887752   1               011256778899999999


Q ss_pred             HHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         256 AGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      ++...|.+++.||+++ ++.+|+++|+++|++
T Consensus       119 ~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~  150 (399)
T 2oga_A          119 AVSATGATPVPVEPHEDHPTLDPLLVEKAITP  150 (399)
T ss_dssp             HHHHTTCEEEEECBCSSSSSBCHHHHHHHCCT
T ss_pred             HHHHCCCEEEEEecCCCCCCcCHHHHHHhcCC
Confidence            9999999999999987 689999999998864

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=97.50  E-value=0.00071  Score=60.43  Aligned_cols=79  Identities=9%  Similarity=-0.021  Sum_probs=64.8

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+.+++++|.+++         .-+||+|+|+++..++.+.     +     |          + .|+++..+|.++.
T Consensus        55 ~lr~~la~~~~~~~~---------~i~~t~G~~~~l~~~~~~~-----~-----g----------d-~vl~~~p~~~~~~  104 (337)
T 3p1t_A           55 RVMRKLAEHFSCPED---------NLMLVRGIDECFDRISAEF-----S-----S----------M-RFVTAWPGFDGYR  104 (337)
T ss_dssp             HHHHHHHHHHTSCGG---------GEEEESHHHHHHHHHHHHS-----T-----T----------S-EEEEESSSCSHHH
T ss_pred             HHHHHHHHHhCcCHH---------HEEEeCCHHHHHHHHHHhc-----C-----C----------C-eEEEeCCCcHHHH
Confidence            455677888888754         5899999999988877653     1     1          1 4667889999999


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAA  283 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~  283 (297)
                      .++...|++++.||+++++.+|+++|++.
T Consensus       105 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~  133 (337)
T 3p1t_A          105 ARIAVSGLRHFEIGLTDDLLLDPNDLAQV  133 (337)
T ss_dssp             HHHTTSCCEEEEECBCTTSSBCHHHHTTC
T ss_pred             HHHHHcCCEEEEecCCCCCCCCHHHHHhh
Confidence            99999999999999999999999999875

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=97.49  E-value=0.00029  Score=64.88  Aligned_cols=112  Identities=11%  Similarity=-0.007  Sum_probs=79.6

Q ss_pred             HHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         149 ADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       149 ~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      .+.+...+... ...|........+++.+.+|+.+.+|.+-..      ...-++|+|||+++..++.+..+        
T Consensus        42 ~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~------~~~i~~~~g~~~a~~~~~~~~~~--------  107 (410)
T 3e2y_A           42 KEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDP------NEEILVAVGAYGSLFNSIQGLVD--------  107 (410)
T ss_dssp             HHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCT------TTSEEEESHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCC------CCCEEEeCCcHHHHHHHHHHhcC--------
Confidence            34444444332 2233333345788889999999998875320      02589999999999998877511        


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC-----------CCCCcCHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD-----------DSYKLRGDALEAAIE  285 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d-----------~~~~md~~~L~~~i~  285 (297)
                                 +.-.|+++..+|.+...++...|.+++.||++           .++.+|+++|+++++
T Consensus       108 -----------~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~  165 (410)
T 3e2y_A          108 -----------PGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS  165 (410)
T ss_dssp             -----------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC
T ss_pred             -----------CCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcC
Confidence                       11246677889999999999999999999987           466799999998874

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=97.49  E-value=0.00036  Score=65.54  Aligned_cols=89  Identities=13%  Similarity=0.085  Sum_probs=66.0

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      +..++...++++    .+++++|.+           ..++|+|||+||..++.++.+                  ..+  
T Consensus        71 y~~~~~~~~l~~----~la~~~~~~-----------~~~~~~~gt~a~~~al~~l~~------------------~gd--  115 (456)
T 2ez2_A           71 YAGSENFYHLER----TVQELFGFK-----------HIVPTHQGRGAENLLSQLAIK------------------PGQ--  115 (456)
T ss_dssp             SSSCHHHHHHHH----HHHHHHCCS-----------EEEEESSHHHHHHHHHHHHCC------------------TTC--
T ss_pred             cccChhHHHHHH----HHHHHhCCC-----------cEEEeCCcHHHHHHHHHHhCC------------------CCC--
Confidence            444555555655    556666764           389999999999999877511                  123  


Q ss_pred             EEecCCCc-chHHHHHHhcCCceEEeeCCC----------CCCcCHHHHHHHHHHH
Q psy1678         243 GYCSDQAH-SSVERAGLLGGVTIRGLPADD----------SYKLRGDALEAAIEED  287 (297)
Q Consensus       243 i~~s~~aH-~Si~Kaa~~lg~~v~~Vp~d~----------~~~md~~~L~~~i~~~  287 (297)
                       +++..+| .+...++...|..++.|++++          ++.+|+++|+++|++.
T Consensus       116 -i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~  170 (456)
T 2ez2_A          116 -YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEK  170 (456)
T ss_dssp             -EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHH
T ss_pred             -EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhc
Confidence             3456677 777889999999999999874          2799999999999864

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=97.48  E-value=0.00084  Score=67.33  Aligned_cols=83  Identities=11%  Similarity=0.174  Sum_probs=63.2

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +-+.+|+++|.+..          -++|+|+|.||..++.+.    ..               +.-.|+++..+|.|+..
T Consensus       200 aE~~lA~~fGa~~a----------~~v~nGts~An~~ai~al----~~---------------pGD~VLv~r~~H~S~~~  250 (715)
T 3n75_A          200 AEQYIARVFNADRS----------YMVTNGTSTANKIVGMYS----AP---------------AGSTILIDRNCHKSLTH  250 (715)
T ss_dssp             HHHHHHHHHTCSEE----------EEESSHHHHHHHHHHHHH----CC---------------TTCEEEEESSCCHHHHH
T ss_pred             HHHHHHHHhCCCCc----------eEECcHHHHHHHHHHHHh----CC---------------CCCEEEECCCccHHHHH
Confidence            44578999999752          455777789998877764    11               12257789999999999


Q ss_pred             HHHhcCCceEEeeCCC-CCC----c-----CHHHHHHHHHHH
Q psy1678         256 AGLLGGVTIRGLPADD-SYK----L-----RGDALEAAIEED  287 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~-~~~----m-----d~~~L~~~i~~~  287 (297)
                      ++.+.|..++.++++. ++.    +     |+++|+++|++.
T Consensus       251 ~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~  292 (715)
T 3n75_A          251 LMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKET  292 (715)
T ss_dssp             HHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHS
T ss_pred             HHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhC
Confidence            9999999999998763 233    4     899999999864

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=97.44  E-value=0.00032  Score=64.95  Aligned_cols=113  Identities=9%  Similarity=0.081  Sum_probs=77.7

Q ss_pred             HHHHHHHhcccc-ccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIACI-GFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       148 l~d~l~~~lN~n-~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      +.+.+...+... ...|...+....+++.+.+|+.+..|.+-+.      ....++|+|||+++..++.+..+       
T Consensus        55 v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~------~~~v~~t~g~~~a~~~~~~~~~~-------  121 (412)
T 2x5d_A           55 IVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDP------ESEAIVTIGSKEGLAHLMLATLD-------  121 (412)
T ss_dssp             HHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCT------TTSEEEESCHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCC------CcCEEEcCChHHHHHHHHHHhCC-------
Confidence            344455544332 2234334456788888999998888874210      01589999999999998877411       


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC--CCcCHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS--YKLRGDALEAAIE  285 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~--~~md~~~L~~~i~  285 (297)
                                  +.-.|+++..+|.++..++...|.+++.||.+++  +.+|+++|+++|+
T Consensus       122 ------------~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~  170 (412)
T 2x5d_A          122 ------------HGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESI  170 (412)
T ss_dssp             ------------TTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEE
T ss_pred             ------------CCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcc
Confidence                        1124677888999999999999999999999874  3488999988775

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=97.39  E-value=0.00016  Score=65.83  Aligned_cols=92  Identities=9%  Similarity=-0.011  Sum_probs=67.5

Q ss_pred             ccccCchhhHHHHHHHHHHHHHc-CCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678         162 TWIASPACTELEVVMLDWLGKML-DLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN  240 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~ll-g~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~  240 (297)
                      .+...+...++++.+.    +++ +.+.+         ..++|+|||++|..++.+..+                   +.
T Consensus        58 ~y~~~~g~~~l~~~la----~~~~~~~~~---------~v~~~~g~~~a~~~~~~~l~~-------------------~g  105 (375)
T 3op7_A           58 NYGWIEGSPAFKKSVS----QLYTGVKPE---------QILQTNGATGANLLVLYSLIE-------------------PG  105 (375)
T ss_dssp             SSCCTTCCHHHHHHHH----TTSSSCCGG---------GEEEESHHHHHHHHHHHHHCC-------------------TT
T ss_pred             CCCCCCChHHHHHHHH----HHhccCChh---------hEEEcCChHHHHHHHHHHhcC-------------------CC
Confidence            3444444556666544    444 34443         589999999999998876411                   11


Q ss_pred             eEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHH
Q psy1678         241 LVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE  285 (297)
Q Consensus       241 ~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~  285 (297)
                      -.|++...+|.+...++...|.+++.||++.  .+.+|+++|+++|+
T Consensus       106 d~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~  152 (375)
T 3op7_A          106 DHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIR  152 (375)
T ss_dssp             CEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC
T ss_pred             CEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhc
Confidence            2567788999999999999999999999873  56699999999886

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=97.38  E-value=0.00024  Score=64.69  Aligned_cols=84  Identities=11%  Similarity=0.090  Sum_probs=66.1

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+.+++.+|.+++         .-++|+|||+++..++.+..+                  ..+-.|+++.-+|.+..
T Consensus        62 ~lr~~la~~~~~~~~---------~v~~~~G~~~ai~~~~~~~~~------------------~g~d~Vl~~~p~~~~~~  114 (356)
T 1fg7_A           62 AVIENYAQYAGVKPE---------QVLVSRGADEGIELLIRAFCE------------------PGKDAILYCPPTYGMYS  114 (356)
T ss_dssp             HHHHHHHHHHTSCGG---------GEEEESHHHHHHHHHHHHHCC------------------TTTCEEEECSSSCTHHH
T ss_pred             HHHHHHHHHhCCChH---------HEEEcCCHHHHHHHHHHHHhC------------------CCCCEEEEeCCChHHHH
Confidence            345566777788753         589999999999888876521                  01125677889999999


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      .++...|.+++.||.++++.+|+++|+++++
T Consensus       115 ~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~  145 (356)
T 1fg7_A          115 VSAETIGVECRTVPTLDNWQLDLQGISDKLD  145 (356)
T ss_dssp             HHHHHHTCEEEECCCCTTSCCCHHHHHTSCT
T ss_pred             HHHHHcCCEEEEeeCCCCCCCCHHHHHHHhc
Confidence            9999999999999999888999999988774

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=97.36  E-value=0.00034  Score=70.48  Aligned_cols=83  Identities=11%  Similarity=0.030  Sum_probs=63.2

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++-+.+|+++|.+.          .-++|+|+|++|..++.+...                   +.-.|+++...|.|+.
T Consensus       177 e~e~~lA~~~gae~----------~i~v~nGtt~an~~ai~al~~-------------------pGD~VLv~~~~H~S~~  227 (730)
T 1c4k_A          177 AAEKHAARVYNADK----------TYFVLGGSSNANNTVTSALVS-------------------NGDLVLFDRNNHKSVY  227 (730)
T ss_dssp             HHHHHHHHHTTCSE----------EEEESSHHHHHHHHHHHHHCC-------------------TTCEEEEETTCCHHHH
T ss_pred             HHHHHHHHHHCCCc----------EEEECCHHHHHHHHHHHHhcC-------------------CCCEEEEcCCchHHHH
Confidence            45678899999875          367788888999988887411                   1125778999999999


Q ss_pred             HH-HHhcCCceEEeeCCCC-----CCcCHHHH-----HHHHHH
Q psy1678         255 RA-GLLGGVTIRGLPADDS-----YKLRGDAL-----EAAIEE  286 (297)
Q Consensus       255 Ka-a~~lg~~v~~Vp~d~~-----~~md~~~L-----~~~i~~  286 (297)
                      .+ +.+.|..++.++.+.+     |.+|+++|     +++|++
T Consensus       228 ~~~~~l~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~  270 (730)
T 1c4k_A          228 NSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAK  270 (730)
T ss_dssp             HHHTTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTT
T ss_pred             HHHHHHCCCEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhc
Confidence            99 8888999988887532     45899999     666653

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=97.35  E-value=0.0014  Score=61.65  Aligned_cols=98  Identities=14%  Similarity=0.094  Sum_probs=58.4

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCC-c
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA-N  240 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~-~  240 (297)
                      .|..+|...++|    +++++++|.+           ..+||+|||+||..|+.++++.....   .|.       .+ +
T Consensus        69 ~y~~~~~~~~l~----~~la~~~~~~-----------~v~~t~~gt~A~~~al~~~~~~~~~~---~G~-------~~~d  123 (467)
T 2oqx_A           69 AYSGSRSYYALA----ESVKNIFGYQ-----------YTIPTHQGRGAEQIYIPVLIKKREQE---KGL-------DRSK  123 (467)
T ss_dssp             CSSSCHHHHHHH----HHHHHHHCCS-----------EEEEEC--CCSHHHHHHHHHHHHHHH---HCC-------CTTT
T ss_pred             eeccCchhHHHH----HHHHHHhCcC-----------cEEEcCCcHHHHHHHHHHHhcccccc---CCC-------Cccc
Confidence            344455544554    4677777764           38999999999999999997642111   110       01 2


Q ss_pred             eEEEecCCCcchHHHH-HHhcCCceEEe------eCC----CCCCcCHHHHHHHHHH
Q psy1678         241 LVGYCSDQAHSSVERA-GLLGGVTIRGL------PAD----DSYKLRGDALEAAIEE  286 (297)
Q Consensus       241 ~~i~~s~~aH~Si~Ka-a~~lg~~v~~V------p~d----~~~~md~~~L~~~i~~  286 (297)
                      - |+++ ..|+.-..+ ....|..+...      +++    .+|.+|+++|+++|++
T Consensus       124 ~-Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~  178 (467)
T 2oqx_A          124 M-VAFS-NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEE  178 (467)
T ss_dssp             C-EEEE-SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHH
T ss_pred             e-EEec-ccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHh
Confidence            2 4455 578654333 23345544332      333    4678999999999986

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=97.34  E-value=7.4e-05  Score=67.59  Aligned_cols=94  Identities=10%  Similarity=0.028  Sum_probs=68.5

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCCh-hHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTA-SEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGG-T~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ++....+..++.+++++++|.++.        ...+||+|+ |+++..++.+.-..        +        .+..+|+
T Consensus        43 ~~~~~~~~~~l~~~la~~~g~~~~--------~~v~~~~g~gt~al~~~~~~l~~~--------~--------~~g~~vi   98 (360)
T 1w23_A           43 SQSYEEVHEQAQNLLRELLQIPND--------YQILFLQGGASLQFTMLPMNLLTK--------G--------TIGNYVL   98 (360)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCTT--------EEEEEESSHHHHHHHHHHHHHCCT--------T--------CEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCC--------ceEEEECCcchHHHHHHHHHhcCC--------C--------CcccEEE
Confidence            555566667799999999999631        148899998 99998877653110        0        1223677


Q ss_pred             ecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHH-HHH
Q psy1678         245 CSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEA-AIE  285 (297)
Q Consensus       245 ~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~-~i~  285 (297)
                      ++..+|++.. .+..+| +++.||+|+ +|.+|+++|++ +|.
T Consensus        99 ~~~~~~~~~~-~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~  139 (360)
T 1w23_A           99 TGSWSEKALK-EAKLLG-ETHIAASTKANSYQSIPDFSEFQLN  139 (360)
T ss_dssp             CSHHHHHHHH-HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCC
T ss_pred             ecchhHHHHH-HHHHhC-CeEEeecccccCcCCccchHhhccC
Confidence            8888888854 456679 999999986 78899999988 663

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=97.34  E-value=0.0004  Score=64.26  Aligned_cols=95  Identities=13%  Similarity=0.115  Sum_probs=70.1

Q ss_pred             CchhhHHHHHHHHHHHHH------cCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCC
Q psy1678         166 SPACTELEVVMLDWLGKM------LDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA  239 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~l------lg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~  239 (297)
                      .+...++++.+.+|+.+.      .|++-.       ....++|+|||+++..++.+..+                   +
T Consensus        74 ~~~~~~lr~~la~~~~~~~~~~~~~~~~~~-------~~~v~~~~g~~~al~~~~~~l~~-------------------~  127 (416)
T 1bw0_A           74 TVGSPEAREAVATWWRNSFVHKEELKSTIV-------KDNVVLCSGGSHGILMAITAICD-------------------A  127 (416)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCCSTTTGGGCC-------GGGEEEESHHHHHHHHHHHHHCC-------------------T
T ss_pred             CCCCHHHHHHHHHHHHhhhcccccCCCCCC-------cceEEEeCChHHHHHHHHHHhCC-------------------C
Confidence            345677888888888743      232211       02589999999999988877511                   1


Q ss_pred             ceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       240 ~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                      .-.|+++..+|.++..++...|.+++.||+++  .+.+|+++|+++|++
T Consensus       128 gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  176 (416)
T 1bw0_A          128 GDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDD  176 (416)
T ss_dssp             TCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT
T ss_pred             CCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhcc
Confidence            12466778899999999999999999999875  378999999998853

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=97.32  E-value=0.0016  Score=59.72  Aligned_cols=85  Identities=13%  Similarity=0.020  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH  250 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH  250 (297)
                      ....++.+.+++++|.++           .+++++||+++..++.+..    .               +.-.|+++...|
T Consensus        90 ~~~~~l~~~la~~~g~~~-----------~i~~~sGs~a~~~~~~~~~----~---------------~gd~v~~~~~~~  139 (401)
T 1fc4_A           90 DSHKELEQKLAAFLGMED-----------AILYSSCFDANGGLFETLL----G---------------AEDAIISDALNH  139 (401)
T ss_dssp             HHHHHHHHHHHHHHTCSE-----------EEEESCHHHHHHTTHHHHC----C---------------TTCEEEEETTCC
T ss_pred             HHHHHHHHHHHHHhCCCc-----------EEEeCChHHHHHHHHHHHc----C---------------CCCEEEEcchhH
Confidence            445567778888888862           5677778999998776641    1               112567788999


Q ss_pred             chHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHC
Q psy1678         251 SSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKK  290 (297)
Q Consensus       251 ~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~  290 (297)
                      .+...++...|..++.+|.     +|+++|++.|++...+
T Consensus       140 ~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~  174 (401)
T 1fc4_A          140 ASIIDGVRLCKAKRYRYAN-----NDMQELEARLKEAREA  174 (401)
T ss_dssp             HHHHHHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCceEEECC-----CCHHHHHHHHHHhhcc
Confidence            9999999999999988873     5899999999875543

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=97.32  E-value=0.0003  Score=63.59  Aligned_cols=80  Identities=16%  Similarity=0.042  Sum_probs=60.4

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+++++++|.+.           .+|++|||++|..++.+.....                 .+.+|+++...|++..
T Consensus        52 ~l~~~la~~~~~~~-----------~i~~~~g~~a~~~a~~~~~~~g-----------------~~~vvi~~~~~~~~~~  103 (359)
T 3pj0_A           52 DFETKIAKILGKQS-----------AVFFPSGTMAQQIALRIWADRK-----------------ENRRVAYHPLSHLEIH  103 (359)
T ss_dssp             HHHHHHHHHHTCSE-----------EEEESCHHHHHHHHHHHHHHHH-----------------TCCEEEECTTCHHHHS
T ss_pred             HHHHHHHHHhCCCc-----------EEEeCCHHHHHHHHHHHHHhcC-----------------CCcEEEEeccceeeeh
Confidence            45568888998864           5888999999999988865421                 1235677888898876


Q ss_pred             HH---HHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678         255 RA---GLLGGVTIRGLPADDSYKLRGDALEAA  283 (297)
Q Consensus       255 Ka---a~~lg~~v~~Vp~d~~~~md~~~L~~~  283 (297)
                      ..   +...|..++.||. +++.+|+++|+++
T Consensus       104 ~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~  134 (359)
T 3pj0_A          104 EQDGLKELQQITPLLLGT-ANQLLTIDDIKSL  134 (359)
T ss_dssp             STTHHHHHHCCEEEECSC-TTSCCCHHHHHTC
T ss_pred             hcchHHHhcCceEEecCC-cCCCcCHHHHHhc
Confidence            43   2456999999988 5689999999876

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=97.30  E-value=0.0014  Score=60.58  Aligned_cols=78  Identities=15%  Similarity=0.085  Sum_probs=60.6

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+++++++|.+.           .+++++||++|..++.+..+                   +.-.|+++...|.+..
T Consensus       108 ~l~~~la~~~g~~~-----------~i~~~sGt~a~~~~l~~~~~-------------------~gd~Vl~~~~~~~~~~  157 (409)
T 3kki_A          108 MIEKRLAKFTGFDE-----------CLLSQSGWNANVGLLQTICQ-------------------PNTNVYIDFFAHMSLW  157 (409)
T ss_dssp             HHHHHHHHHHTCSE-----------EEEESCHHHHHHHHHHHHCC-------------------TTCEEEEETTSCHHHH
T ss_pred             HHHHHHHHHhCCCe-----------EEEecchHHHHHHHHHHhcC-------------------CCCEEEECCCcCHHHH
Confidence            34567788888764           57778889999988875411                   1225678999999999


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      .++.+.|.+++.++.     +|+++|+++|++.
T Consensus       158 ~~~~~~g~~~~~~~~-----~d~~~le~~l~~~  185 (409)
T 3kki_A          158 EGARYANAQAHPFMH-----NNCDHLRMLIQRH  185 (409)
T ss_dssp             HHHHHTTCEEEEECT-----TCHHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEecC-----CCHHHHHHHHHhc
Confidence            999999999888765     6899999999864

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=97.29  E-value=0.00025  Score=63.85  Aligned_cols=89  Identities=15%  Similarity=0.159  Sum_probs=63.2

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      +...|...++|    +++++++|.+.           .++|+|||++|..++.+..    .               +.-.
T Consensus        34 y~~~~~~~~l~----~~la~~~g~~~-----------~~~~~~gt~a~~~~~~~~~----~---------------~gd~   79 (347)
T 1jg8_A           34 YGEDPTINELE----RLAAETFGKEA-----------ALFVPSGTMGNQVSIMAHT----Q---------------RGDE   79 (347)
T ss_dssp             GTCCHHHHHHH----HHHHHHHTCSE-----------EEEESCHHHHHHHHHHHHC----C---------------TTCE
T ss_pred             cCCChHHHHHH----HHHHHHhCCce-----------EEEecCcHHHHHHHHHHhc----C---------------CCCE
Confidence            33344444444    57788888753           7899999999988876531    0               1124


Q ss_pred             EEecCCCcchHHH---HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVER---AGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~Si~K---aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      |+++..+|++...   ++...|.+++.| .+++|.+|+++|+++|++
T Consensus        80 Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~  125 (347)
T 1jg8_A           80 VILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRP  125 (347)
T ss_dssp             EEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCC
T ss_pred             EEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhcc
Confidence            6678889987654   567789998888 667888999999998853

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=97.29  E-value=0.00056  Score=63.76  Aligned_cols=98  Identities=14%  Similarity=0.032  Sum_probs=71.4

Q ss_pred             hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      +...+-+.+.+|+.+..|.+......+.+...-++|+|||+++..++.+..+                   +.-.|++.+
T Consensus        79 G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~-------------------~gd~Vlv~~  139 (425)
T 2r2n_A           79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN-------------------PGDNVLLDE  139 (425)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC-------------------TTCEEEEES
T ss_pred             CCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC-------------------CCCEEEEeC
Confidence            3446677788899888887631000000001489999999999888877411                   112466788


Q ss_pred             CCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         248 QAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       248 ~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      -+|.+...++...|.+++.||++++| +|+++|+++|+
T Consensus       140 p~y~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~  176 (425)
T 2r2n_A          140 PAYSGTLQSLHPLGCNIINVASDESG-IVPDSLRDILS  176 (425)
T ss_dssp             SCCHHHHHHHGGGTCEEEEECEETTE-ECHHHHHHHHT
T ss_pred             CCcHHHHHHHHHcCCEEEEeCcCCCC-CCHHHHHHHHH
Confidence            89999999999999999999998765 99999999986

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=97.29  E-value=0.0011  Score=61.77  Aligned_cols=91  Identities=10%  Similarity=0.024  Sum_probs=70.5

Q ss_pred             hhhHHHHHHHHHHHHHc-CCCccccccCCCCCC---eEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678         168 ACTELEVVMLDWLGKML-DLPKEFLACSGGKGG---GVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG  243 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~ll-g~~~~~~~~~~~~~~---G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i  243 (297)
                      ....+++.+.+|+.+.. +.+++         .   -++|+|||+++..++.+..+                   +.-.|
T Consensus        89 g~~~lr~~ia~~~~~~~~~~~~~---------~~~~i~~t~g~~~al~~~~~~l~~-------------------~gd~V  140 (430)
T 2x5f_A           89 GIEELRDLWQQKMLRDNPELSID---------NMSRPIVTNALTHGLSLVGDLFVN-------------------QDDTI  140 (430)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCGG---------GBCCCEEESHHHHHHHHHHHHHCC-------------------TTCEE
T ss_pred             CCHHHHHHHHHHHhccCcccCCC---------ccceEEEcCCchHHHHHHHHHHhC-------------------CCCEE
Confidence            46678887878876663 33332         4   78999999999988876521                   11246


Q ss_pred             EecCCCcchHHHHHHh-cCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         244 YCSDQAHSSVERAGLL-GGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       244 ~~s~~aH~Si~Kaa~~-lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      ++++-+|.+...++.. .|.+++.+|+++ ++.+|+++|+++|++
T Consensus       141 l~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~  185 (430)
T 2x5f_A          141 LLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQS  185 (430)
T ss_dssp             EEESSCCTHHHHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHH
T ss_pred             EEcCCcCccHHHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHh
Confidence            6788899999999999 999999999976 578999999999975

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=97.24  E-value=0.00082  Score=61.88  Aligned_cols=92  Identities=10%  Similarity=0.004  Sum_probs=58.6

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      +....+|..+.+++++++|.+..          -+++++||++|..++.+..+                   +.-.|+++
T Consensus        67 ~~~~~~~~~~~~~la~~~g~~~~----------~i~~~sGt~a~~~~~~~~~~-------------------~gd~vl~~  117 (417)
T 3n0l_A           67 EFVDEIETLAIERCKKLFNCKFA----------NVQPNSGSQANQGVYAALIN-------------------PGDKILGM  117 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSEE----------ECCCSSHHHHHHHHHHHHSC-------------------TTCEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCc----------ceEeccHHHHHHHHHHHhcC-------------------CCCEEEec
Confidence            45568898899999999998653          34445559999998877511                   11246677


Q ss_pred             CCCcchHHH---HHHhcCC--ceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         247 DQAHSSVER---AGLLGGV--TIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       247 ~~aH~Si~K---aa~~lg~--~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      ..+|.++..   .....|.  .++.+++++++.+|+++|+++|++.
T Consensus       118 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~  163 (417)
T 3n0l_A          118 DLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE  163 (417)
T ss_dssp             CC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhc
Confidence            788877655   3344444  5667778888999999999999753

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=97.20  E-value=0.0017  Score=59.87  Aligned_cols=82  Identities=12%  Similarity=0.017  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      ...-.++.+++++++|.++           .+++++||++|..++.+...                   +.-.|+++..+
T Consensus        63 ~~~~~~l~~~la~~~g~~~-----------~i~~~sG~~a~~~~l~~~~~-------------------~gd~vi~~~~~  112 (398)
T 2rfv_A           63 NPTTDALEKKLAVLERGEA-----------GLATASGISAITTTLLTLCQ-------------------QGDHIVSASAI  112 (398)
T ss_dssp             CHHHHHHHHHHHHHHTCSE-----------EEEESSHHHHHHHHHHHHCC-------------------TTCEEEEESSS
T ss_pred             ChHHHHHHHHHHHHhCCCc-----------EEEECCHHHHHHHHHHHHhC-------------------CCCEEEEcCCC
Confidence            3444567789999999862           67888899999999887611                   11257788999


Q ss_pred             cchHHHHH----HhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         250 HSSVERAG----LLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       250 H~Si~Kaa----~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      |.++..++    ...|..++.||++     |+++|+++|++
T Consensus       113 ~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~  148 (398)
T 2rfv_A          113 YGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMRP  148 (398)
T ss_dssp             CHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCT
T ss_pred             cccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcCC
Confidence            99998876    7789999999886     78888888753

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=97.18  E-value=0.00094  Score=61.92  Aligned_cols=90  Identities=11%  Similarity=-0.018  Sum_probs=63.5

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHH--HHHHHHHHHHHHHHHhhCC--CCCCcCCCCceEEEecCCCcc
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATL--VALLGAKAKTMQRVKEAHP--DWKDSDIIANLVGYCSDQAHS  251 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl--~Al~~AR~~~~~~~~~~~~--~~~~~~~~~~~~i~~s~~aH~  251 (297)
                      +.+.+++.++.+++         .-++|+|||+++.  .++.+..+.. +     |.  .|.+    ..-.|++..-+|.
T Consensus        75 lr~~ia~~~~~~~~---------~i~~t~G~~~al~~~~~~~~l~~~~-~-----g~~~~~~~----~gd~Vlv~~p~y~  135 (423)
T 3ez1_A           75 ARALFAGYLDVKAE---------NVLVWNNSSLELQGLVLTFALLHGV-R-----GSTGPWLS----QTPKMIVTVPGYD  135 (423)
T ss_dssp             HHHHHHHHTTSCGG---------GEEECSSCHHHHHHHHHHHHHHTCC-T-----TCSSCGGG----GCCEEEEEESCCH
T ss_pred             HHHHHHHHhCCChh---------hEEEeCCcHHHHHHHHHHHHHhccC-C-----CccccccC----CCCEEEEcCCCcH
Confidence            34456666687654         5899999999997  5555432100 0     00  0000    0135677889999


Q ss_pred             hHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         252 SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       252 Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      ....++...|.+++.||++++| +|+++|+++|+
T Consensus       136 ~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~  168 (423)
T 3ez1_A          136 RHFLLLQTLGFELLTVDMQSDG-PDVDAVERLAG  168 (423)
T ss_dssp             HHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEeccCCCCC-CCHHHHHHHHh
Confidence            9999999999999999999875 99999999985

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=97.17  E-value=0.00057  Score=63.81  Aligned_cols=97  Identities=13%  Similarity=0.065  Sum_probs=68.4

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |...+...++++.+.+++... |.+-.       ...-++|+|||+++..++.+.++                   +.-.
T Consensus        92 y~~~~g~~~lr~~la~~~~~~-~~~~~-------~~~v~~t~g~t~al~~~~~~l~~-------------------~gd~  144 (427)
T 3dyd_A           92 YAPSIGFLSSREEIASYYHCP-EAPLE-------AKDVILTSGCSQAIDLCLAVLAN-------------------PGQN  144 (427)
T ss_dssp             CCCTTCCHHHHHHHHHHHCBT-TBCCC-------GGGEEEESSHHHHHHHHHHHHCC-------------------TTCE
T ss_pred             CCCCCCcHHHHHHHHHHHhhc-CCCCC-------hHHEEEecCcHHHHHHHHHHhcC-------------------CCCE
Confidence            333444556666555555433 33211       02589999999999998887521                   1124


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~~  286 (297)
                      |+++.-+|.....++...|++++.+|.+  .++.+|+++|++.|++
T Consensus       145 vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  190 (427)
T 3dyd_A          145 ILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDE  190 (427)
T ss_dssp             EEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCT
T ss_pred             EEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc
Confidence            6778889999999999999999999986  3678999999887753

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=97.16  E-value=0.0016  Score=60.06  Aligned_cols=86  Identities=16%  Similarity=0.090  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc
Q psy1678         172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS  251 (297)
Q Consensus       172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~  251 (297)
                      .-.++.+++++++|.+.+         ..+||+|||+++..++.+++.....  +  .        ..+-+|+++...|.
T Consensus        72 ~~~~l~~~la~~~g~~~~---------~v~~~~g~t~al~~al~~~~~~~~~--~--~--------~gd~vii~~~~~~~  130 (416)
T 1qz9_A           72 LSERLGNRLATLIGARDG---------EVVVTDTTSINLFKVLSAALRVQAT--R--S--------PERRVIVTETSNFP  130 (416)
T ss_dssp             HHHHHHHHHHTTTTCCTT---------SEEECSCHHHHHHHHHHHHHHHHHH--H--S--------TTCCEEEEETTSCH
T ss_pred             HHHHHHHHHHHHcCCCcc---------cEEEeCChhHHHHHHHHhhcccccc--c--C--------CCCcEEEEcCCCCC
Confidence            444688899999998643         5889999999998888887642110  0  0        11235777888999


Q ss_pred             hHHHHHH----hc--CCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         252 SVERAGL----LG--GVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       252 Si~Kaa~----~l--g~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      |...+..    ..  |.+++.||+       +++|+++|.
T Consensus       131 ~~~~~~~~~~~~~~~g~~~~~v~~-------~~~l~~~i~  163 (416)
T 1qz9_A          131 TDLYIAEGLADMLQQGYTLRLVDS-------PEELPQAID  163 (416)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEESS-------GGGHHHHCS
T ss_pred             chHHHHHHHHHHhcCCceEEEeCc-------HHHHHHHhC
Confidence            8776543    23  888887775       555555553

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=97.15  E-value=0.0022  Score=58.84  Aligned_cols=92  Identities=16%  Similarity=0.058  Sum_probs=64.9

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      ++.+.++-.++.+++++++|.++          .-+||+|||++|..++...     ..              .+ .|++
T Consensus        30 ~~~~~~~~~~~~~~l~~~~~~~~----------~v~~~~sgt~a~~~~~~~~-----~~--------------gd-~vi~   79 (379)
T 3ke3_A           30 SKAFQEVMNDLLSNLKTVYNAEA----------AVIIPGSGTYGMEAVARQL-----TI--------------DE-DCLI   79 (379)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCSE----------EEEEESCHHHHHHHHHHHH-----CT--------------TC-EEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCC----------EEEEcCChhHHHHHHHHhC-----CC--------------CC-eEEE
Confidence            56666777789999999999873          4788999999998875321     10              11 3555


Q ss_pred             cCCCcchH--HHHHHhcCC--ceEEeeCCCC---------CCcCHHHHHHHHHHH
Q psy1678         246 SDQAHSSV--ERAGLLGGV--TIRGLPADDS---------YKLRGDALEAAIEED  287 (297)
Q Consensus       246 s~~aH~Si--~Kaa~~lg~--~v~~Vp~d~~---------~~md~~~L~~~i~~~  287 (297)
                      ++..|++.  ...+...|+  .++.++++..         +.+|+++|+++|++.
T Consensus        80 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~  134 (379)
T 3ke3_A           80 IRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKED  134 (379)
T ss_dssp             EECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHH
T ss_pred             EeCCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhc
Confidence            66777764  344555665  7788887642         369999999999753

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=97.15  E-value=0.0061  Score=55.86  Aligned_cols=82  Identities=12%  Similarity=0.013  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc
Q psy1678         172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS  251 (297)
Q Consensus       172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~  251 (297)
                      ...++.+.+++++|.++          .-++|+| +.+|+.++.+.....                 +.-.|+++...|.
T Consensus        92 ~~~~l~~~la~~~~~~~----------~i~~~sG-~~a~~~~~~~l~~~~-----------------~gd~Vl~~~~~~~  143 (401)
T 2bwn_A           92 YHRRLEAEIAGLHQKEA----------ALVFSSA-YNANDATLSTLRVLF-----------------PGLIIYSDSLNHA  143 (401)
T ss_dssp             HHHHHHHHHHHHTTCSE----------EEEESCH-HHHHHHHHHHHHHHS-----------------TTCEEEEETTCCH
T ss_pred             HHHHHHHHHHHHhCCCc----------EEEECCc-HHHHHHHHHHHhcCC-----------------CCCEEEECchhhH
Confidence            33456677888888753          3556555 558888776542210                 1125777889999


Q ss_pred             hHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         252 SVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       252 Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++..++...|..++.||.+     |+++|++.|++
T Consensus       144 ~~~~~~~~~g~~~~~v~~~-----d~~~le~~l~~  173 (401)
T 2bwn_A          144 SMIEGIKRNAGPKRIFRHN-----DVAHLRELIAA  173 (401)
T ss_dssp             HHHHHHHHSCCCEEEECTT-----CHHHHHHHHHH
T ss_pred             HHHHHHHHcCCeEEEEcCC-----CHHHHHHHHHh
Confidence            9999999999999999986     79999998875

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=97.13  E-value=0.0014  Score=62.97  Aligned_cols=98  Identities=12%  Similarity=0.001  Sum_probs=53.5

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..+...++|..+.+++++++|.+....      ..-+++++||+||+.++.+.    +.               +.-.|+
T Consensus        94 G~~~~~~lE~~a~~~~a~l~g~~~~~~------~~~v~~~sGt~An~~al~al----~~---------------pGD~Vl  148 (490)
T 2a7v_A           94 GAEVVDEIELLCQRRALEAFDLDPAQW------GVNVQPYSGSPANLAVYTAL----LQ---------------PHDRIM  148 (490)
T ss_dssp             ----CTHHHHHHHHHHHHHTTCCTTTE------EEECCCSSHHHHHHHHHHHH----CC---------------SCEECC
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcccC------ceEEeCCchHHHHHHHHHHH----cC---------------CCCEec
Confidence            346667999999999999999975310      01456779999999988764    11               112345


Q ss_pred             ecCCCcc------hHH--HHHHhcCCc--eEEeeCC-CCCCcCHHHHHHHHHHH
Q psy1678         245 CSDQAHS------SVE--RAGLLGGVT--IRGLPAD-DSYKLRGDALEAAIEED  287 (297)
Q Consensus       245 ~s~~aH~------Si~--Kaa~~lg~~--v~~Vp~d-~~~~md~~~L~~~i~~~  287 (297)
                      ++...|.      ++.  +++.+.|..  ++.+++| ++|.+|+++|+++|.+.
T Consensus       149 ~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~  202 (490)
T 2a7v_A          149 GLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLF  202 (490)
T ss_dssp             C-------------------------------CCBCTTTCSBCHHHHHHHHHHH
T ss_pred             ccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhc
Confidence            5554443      322  234456654  4455566 57999999999999753

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=97.12  E-value=0.00028  Score=64.83  Aligned_cols=92  Identities=8%  Similarity=0.054  Sum_probs=65.2

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      .|....+|+.+.+++++++|.+..          -+++++||++|..++.++..                   +.-.|++
T Consensus        64 ~~~~~~l~~~~r~~la~~~g~~~~----------~i~~~sGt~a~~~a~~~~~~-------------------~gd~Vl~  114 (405)
T 2vi8_A           64 CEYVDIVEELARERAKQLFGAEHA----------NVQPHSGAQANMAVYFTVLE-------------------HGDTVLG  114 (405)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCSEE----------ECCCSSHHHHHHHHHHHHCC-------------------TTCEEEE
T ss_pred             chHHHHHHHHHHHHHHHHhCCCce----------EEEecCcHHHHHHHHHHhcC-------------------CCCEEEE
Confidence            355678888899999999998752          34455569999999887621                   1124566


Q ss_pred             cCCCcchHHH-HH--HhcC--CceEEeeCC-CCCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSSVER-AG--LLGG--VTIRGLPAD-DSYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~Si~K-aa--~~lg--~~v~~Vp~d-~~~~md~~~L~~~i~~  286 (297)
                      +...|.+... ++  ...|  +.++.++++ +++.+|+++|+++|++
T Consensus       115 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~  161 (405)
T 2vi8_A          115 MNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARL  161 (405)
T ss_dssp             ECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH
T ss_pred             ecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHh
Confidence            7778877653 11  2334  367777776 6789999999999975

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=97.10  E-value=0.0011  Score=61.54  Aligned_cols=92  Identities=13%  Similarity=0.113  Sum_probs=61.7

Q ss_pred             HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHH--HHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATL--VALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl--~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      .+.+++.++.+++         .-++|+|+|+++.  .++.+..+.. +  + ....|..   .+.-.|++.+-+|.+..
T Consensus        84 r~~ia~~~~~~~~---------~i~~t~G~~~al~~~~~~~~l~~~~-~--g-~~~~~~~---~~gd~V~v~~p~y~~~~  147 (427)
T 3ppl_A           84 RQIWADLLGVPVE---------QVLAGDASSLNIMFDVISWSYIFGN-N--D-SVQPWSK---EETVKWICPVPGYDRHF  147 (427)
T ss_dssp             HHHHHHHHTSCGG---------GEEECSSCHHHHHHHHHHHHHHHCC-T--T-CSSCGGG---SSCCEEEEEESCCHHHH
T ss_pred             HHHHHHHhCCCcc---------eEEEeCCcHHHHHHHHHHHHHhccC-C--c-ccccccC---CCCCEEEEcCCCcHHHH
Confidence            3445555577654         5899999999994  4444432200 0  0 0000000   00225667889999999


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      .++...|.+++.||+|++| +|+++|+++|+
T Consensus       148 ~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~  177 (427)
T 3ppl_A          148 SITERFGFEMISVPMNEDG-PDMDAVEELVK  177 (427)
T ss_dssp             HHHHHTTCEEEEEEEETTE-ECHHHHHHHTT
T ss_pred             HHHHHcCCEEEEeCCCCCC-CCHHHHHHHHh
Confidence            9999999999999999876 99999999883

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=97.08  E-value=0.0034  Score=57.11  Aligned_cols=81  Identities=11%  Similarity=0.055  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH  250 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH  250 (297)
                      ....++.+.+++++|.++           .+++++||+++..++.+..    .               +.-.|+++...|
T Consensus        84 ~~~~~l~~~la~~~g~~~-----------~i~~~sGt~a~~~~~~~~~----~---------------~gd~v~~~~~~~  133 (384)
T 1bs0_A           84 VVHQALEEELAEWLGYSR-----------ALLFISGFAANQAVIAAMM----A---------------KEDRIAADRLSH  133 (384)
T ss_dssp             HHHHHHHHHHHHHHTCSE-----------EEEESCHHHHHHHHHHHHC----C---------------TTCEEEEETTCC
T ss_pred             HHHHHHHHHHHHHhCCCc-----------EEEeCCcHHHHHHHHHHhC----C---------------CCcEEEEccccc
Confidence            445567778888888863           6677777999999877631    1               112567888999


Q ss_pred             chHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         251 SSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       251 ~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .+...++...|.+++.+|.     +|+++|++.|++
T Consensus       134 ~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~  164 (384)
T 1bs0_A          134 ASLLEAASLSPSQLRRFAH-----NDVTHLARLLAS  164 (384)
T ss_dssp             HHHHHHHHTSSSEEEEECT-----TCHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHh
Confidence            9999999999999999884     589999988864

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=97.06  E-value=0.00035  Score=64.23  Aligned_cols=91  Identities=10%  Similarity=0.040  Sum_probs=64.4

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      |....+|..+.+++++++|.+..          -+++++||+++..++.++..                   +.-.|+++
T Consensus        65 ~~~~~~e~~ar~~la~~~g~~~~----------~i~~~sGt~a~~~~~~~~~~-------------------~gd~Vl~~  115 (407)
T 2dkj_A           65 EVIDRVESLAIERAKALFGAAWA----------NVQPHSGSQANMAVYMALME-------------------PGDTLMGM  115 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSEE----------ECCCSSHHHHHHHHHHHHCC-------------------TTCEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHhCCCcc----------eEEecchHHHHHHHHHHhcC-------------------CCCEEEEe
Confidence            33447887778899999998752          35566678899988887621                   11256677


Q ss_pred             CCCcchH---HHHHHhcCCceEEeeC--C-CCCCcCHHHHHHHHHH
Q psy1678         247 DQAHSSV---ERAGLLGGVTIRGLPA--D-DSYKLRGDALEAAIEE  286 (297)
Q Consensus       247 ~~aH~Si---~Kaa~~lg~~v~~Vp~--d-~~~~md~~~L~~~i~~  286 (297)
                      ..+|.+.   ..++...|..++.+++  + +++.+|+++|+++|++
T Consensus       116 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~  161 (407)
T 2dkj_A          116 DLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE  161 (407)
T ss_dssp             CGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH
T ss_pred             cccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh
Confidence            8888877   4566666764455554  5 3789999999999975

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=97.06  E-value=0.0032  Score=58.07  Aligned_cols=102  Identities=8%  Similarity=-0.103  Sum_probs=69.1

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCe--EEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCC
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGG--VIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA  239 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G--~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~  239 (297)
                      .|...+....+++.+.+|+.   |......    ....-  ..|+|||+++..+..+.+...                .+
T Consensus        74 ~y~~~~g~~~lr~~ia~~~~---~~~~~~~----~~~~i~~~~~~~g~ga~~~~~~~~~~~~----------------~~  130 (409)
T 4eu1_A           74 DYAPVTGIASFVEEAQKLCF---GPTCAAL----RDGRIASCQTLGGTGALRIGGDLLNRFV----------------AN  130 (409)
T ss_dssp             CCCCTTCCHHHHHHHHHHHH---CSSCHHH----HTTCEEEEEESHHHHHHHHHHHHGGGTS----------------SS
T ss_pred             cCCCCCCcHHHHHHHHHHHc---CCCchhh----ccCceeeeecccchHHHHHHHHHHHHhc----------------CC
Confidence            34444455677777777773   4331000    00122  459999999987765543211                11


Q ss_pred             ceEEEecCCCcchHHHHHHhcCCceEEeeC--CCCCCcCHHHHHHHHHH
Q psy1678         240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPA--DDSYKLRGDALEAAIEE  286 (297)
Q Consensus       240 ~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~--d~~~~md~~~L~~~i~~  286 (297)
                      .-.|+++.-+|.+...++...|.+++.+|+  ++++.+|+++|++.|++
T Consensus       131 gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  179 (409)
T 4eu1_A          131 CNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDK  179 (409)
T ss_dssp             CCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHh
Confidence            125677889999999999999999999998  35789999999999975

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=97.01  E-value=0.0056  Score=56.95  Aligned_cols=90  Identities=16%  Similarity=0.068  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .....++.+++++++|.+           ..+||+|||+||..|++++|.+...+ +..         .+.-+|+....-
T Consensus        98 ~~~~~~l~~~la~~~g~~-----------~v~~~~ggteA~~~al~~~~~~~~~~-~~~---------g~~~vi~~~~~y  156 (420)
T 2pb2_A           98 NEPALRLGRKLIDATFAE-----------RVLFMNSGTEANETAFKLARHYACVR-HSP---------FKTKIIAFHNAF  156 (420)
T ss_dssp             CHHHHHHHHHHHHHSSCS-----------EEEEESSHHHHHHHHHHHHHHHHHHH-TCT---------TCCEEEEETTCC
T ss_pred             CHHHHHHHHHHHhhCCCC-----------eEEEeCCHHHHHHHHHHHHHHHhhhc-cCC---------CCCEEEEEeCCc
Confidence            345556777888888742           38999999999999999998754321 100         112355555677


Q ss_pred             cchHHHHHHhcCCc------------eEEeeCCCCCCcCHHHHHHHHH
Q psy1678         250 HSSVERAGLLGGVT------------IRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       250 H~Si~Kaa~~lg~~------------v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      |.+...++.+.|..            ++.+|.+     |+++|+++|+
T Consensus       157 h~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~  199 (420)
T 2pb2_A          157 HGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMD  199 (420)
T ss_dssp             CCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCC
T ss_pred             CCcCHHHHHhcCCccccccCCCCCCCeEEecCC-----CHHHHHHHhc
Confidence            77777777666642            5555543     6777777664

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=97.01  E-value=0.003  Score=58.42  Aligned_cols=91  Identities=15%  Similarity=-0.016  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHcCCCc-cccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         171 ELEVVMLDWLGKMLDLPK-EFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~-~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      ....++.+.++++++.+. +         ..+||+|||++|..++..||...       +         +.-+++.+..-
T Consensus        84 ~~~~~l~~~la~~~~~~~~~---------~v~~~~g~~~a~~~~~~~a~~~~-------~---------~~~vi~~~p~y  138 (426)
T 1sff_A           84 EPYLELCEIMNQKVPGDFAK---------KTLLVTTGSEAVENAVKIARAAT-------K---------RSGTIAFSGAY  138 (426)
T ss_dssp             HHHHHHHHHHHHHSSCSSCE---------EEEEESSHHHHHHHHHHHHHHHH-------T---------CCEEEEETTCC
T ss_pred             HHHHHHHHHHHHhCCccccc---------EEEEeCchHHHHHHHHHHHHHhh-------C---------CCeEEEECCCc
Confidence            344556777888883221 2         48999999999999999876531       1         22356666777


Q ss_pred             cchHHHHHHhcCCc-------------eEEeeCCC-----CCCcCHHHHHHHHHH
Q psy1678         250 HSSVERAGLLGGVT-------------IRGLPADD-----SYKLRGDALEAAIEE  286 (297)
Q Consensus       250 H~Si~Kaa~~lg~~-------------v~~Vp~d~-----~~~md~~~L~~~i~~  286 (297)
                      |.+...++.+.|..             ++.||++.     .+.+|+++|+++|++
T Consensus       139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~  193 (426)
T 1sff_A          139 HGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKN  193 (426)
T ss_dssp             CCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHH
T ss_pred             CCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHh
Confidence            87887788877653             78888864     346899999999974

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=97.00  E-value=0.00082  Score=64.16  Aligned_cols=99  Identities=11%  Similarity=-0.019  Sum_probs=63.1

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |..++...++|..+.+|+++++|.+.+..     ...-++|| |+.+|+.++.+.    +.               +.-.
T Consensus        82 y~~~~~~~~le~~~~~~~a~~~g~~~~~~-----~~~V~~~s-Gs~an~~~~~al----l~---------------pGD~  136 (483)
T 1rv3_A           82 YGGTEHIDELETLCQKRALQAYGLDPQCW-----GVNVQPYS-GSPANFAVYTAL----VE---------------PHGR  136 (483)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTTCCTTTE-----EEECCCSS-HHHHHHHHHHHH----TC---------------TTCE
T ss_pred             cCcchhHHHHHHHHHHHHHHHhCCCcccC-----ceEEEECC-cHHHHHHHHHHh----cC---------------CCCE
Confidence            34455678899999999999999974200     00134455 558887766653    11               1124


Q ss_pred             EEecCCCcchHHH--------HHHhcCCceEEe--eCC-CCCCcCHHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVER--------AGLLGGVTIRGL--PAD-DSYKLRGDALEAAIEE  286 (297)
Q Consensus       243 i~~s~~aH~Si~K--------aa~~lg~~v~~V--p~d-~~~~md~~~L~~~i~~  286 (297)
                      |++++..|.+...        ++.+.|..++.|  ++| ++|.+|+++|+++|.+
T Consensus       137 Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~  191 (483)
T 1rv3_A          137 IMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARL  191 (483)
T ss_dssp             EEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH
T ss_pred             EEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHhh
Confidence            6667777766543        334445334444  457 6799999999999974

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=96.98  E-value=0.0021  Score=59.73  Aligned_cols=98  Identities=19%  Similarity=0.076  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .....++.+|+++.++.+.+         .-+||+||||+|..|+++++.....+    |.      ..+..+|+....-
T Consensus        71 ~~~~~~l~~~la~~~~~~~~---------~v~~~~gg~ea~~~al~~~~~~~~~~----g~------~~~~~vi~~~~~y  131 (430)
T 3i4j_A           71 SDVLEEYAGRLARFVGLPTF---------RFWAVSGGSEATESAVKLARQYHVER----GE------PGRFKVITRVPSY  131 (430)
T ss_dssp             EHHHHHHHHHHHHHTTCTTC---------EEEEESSHHHHHHHHHHHHHHHHHHT----TC------TTCCEEEEETTC-
T ss_pred             CHHHHHHHHHHHHhCCCCCC---------EEEEeCcHHHHHHHHHHHHHHHHHhc----CC------CCCcEEEEEeCCc
Confidence            34555677899999987543         58999999999999999998754321    10      0123344444444


Q ss_pred             cchHHHHHHhcCC--------------ceEEeeCCCC---CCcCHHHHHHHHHH
Q psy1678         250 HSSVERAGLLGGV--------------TIRGLPADDS---YKLRGDALEAAIEE  286 (297)
Q Consensus       250 H~Si~Kaa~~lg~--------------~v~~Vp~d~~---~~md~~~L~~~i~~  286 (297)
                      |.+..-+..+.+.              ++..+|.+..   +..|+++|+++|++
T Consensus       132 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~  185 (430)
T 3i4j_A          132 HGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLER  185 (430)
T ss_dssp             ------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHH
T ss_pred             CCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHh
Confidence            4443333333222              5566776654   45788999999975

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=96.98  E-value=0.0046  Score=56.67  Aligned_cols=70  Identities=16%  Similarity=-0.047  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH  250 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH  250 (297)
                      ....++.+++++++|.+           ..+||+|||+||..++.+++.....+    +.      ..++-+|+.+..-|
T Consensus        81 ~~~~~l~~~la~~~~~~-----------~v~~~~gg~~a~~~al~~~~~~~~~~----~~------~g~~~vi~~~~~y~  139 (406)
T 4adb_A           81 EPVLRLAKKLIDATFAD-----------RVFFCNSGAEANEAALKLARKFAHDR----YG------SHKSGIVAFKNAFH  139 (406)
T ss_dssp             HHHHHHHHHHHHHSSCS-----------EEEEESSHHHHHHHHHHHHHHHHHHH----TC------TTCCEEEEETTCCC
T ss_pred             HHHHHHHHHHHhhCCCC-----------eEEEeCcHHHHHHHHHHHHHHHHHhc----CC------CCCcEEEEECCCcC
Confidence            34456778999999865           38999999999999999987753322    10      01234566666667


Q ss_pred             chHHHHHHhcC
Q psy1678         251 SSVERAGLLGG  261 (297)
Q Consensus       251 ~Si~Kaa~~lg  261 (297)
                      .+...+..+.|
T Consensus       140 ~~~~~~~~~~~  150 (406)
T 4adb_A          140 GRTLFTVSAGG  150 (406)
T ss_dssp             CSSHHHHHHSS
T ss_pred             CCcHHHhhccC
Confidence            66555554433

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=96.96  E-value=0.0057  Score=56.04  Aligned_cols=89  Identities=12%  Similarity=0.012  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .....++.+++++++|. +          ..+||+|||++|..++.+++.....  +..         .+.-+|+.+..-
T Consensus        81 ~~~~~~l~~~la~~~g~-~----------~v~~~~gg~~a~~~al~~~~~~~~~--~~~---------~~~~vi~~~~~y  138 (397)
T 2ord_A           81 NRPQMELAELLSKNTFG-G----------KVFFANTGTEANEAAIKIARKYGKK--KSE---------KKYRILSAHNSF  138 (397)
T ss_dssp             EHHHHHHHHHHHHTTTS-C----------EEEEESSHHHHHHHHHHHHHHHHHH--HCT---------TCCEEEEEBTCC
T ss_pred             CHHHHHHHHHHHHhcCC-C----------eEEEeCCHHHHHHHHHHHHHHHhhc--CCC---------CCceEEEEcCCc
Confidence            34555677788888883 2          4899999999999999988754211  000         122355566677


Q ss_pred             cchHHHHHHhcCCc------------eEEeeCCCCCCcCHHHHHHHHH
Q psy1678         250 HSSVERAGLLGGVT------------IRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       250 H~Si~Kaa~~lg~~------------v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      |.+...++.+.|..            ++.+|.+     |+++|+++|+
T Consensus       139 h~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~  181 (397)
T 2ord_A          139 HGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMS  181 (397)
T ss_dssp             CCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCC
T ss_pred             CCCchhhhhccCChhhccccCCCCCCeeEecCC-----CHHHHHHHhh
Confidence            88888888888775            7777764     7888887775

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=96.00  E-value=0.00013  Score=67.24  Aligned_cols=92  Identities=15%  Similarity=0.117  Sum_probs=71.5

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ...++..+.+|+.+.+|++.+.       ..-++|+|||+++..++.+..+.                   .-.|++...
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~-------~~v~~~~g~~~a~~~~~~~~~~~-------------------gd~vl~~~p  121 (392)
T 3b1d_A           68 SDELLQAVLDWEKSEHQYSFDK-------EDIVFVEGVVPAISIAIQAFTKE-------------------GEAVLINSP  121 (392)
Confidence            6678888999999988854211       25889999999999888876321                   113567788


Q ss_pred             CcchHHHHHHhcCCceEEeeCC-C--CCCcCHHHHHHHHHH
Q psy1678         249 AHSSVERAGLLGGVTIRGLPAD-D--SYKLRGDALEAAIEE  286 (297)
Q Consensus       249 aH~Si~Kaa~~lg~~v~~Vp~d-~--~~~md~~~L~~~i~~  286 (297)
                      +|.+...++...|.+++.+|.+ +  ++++|+++|+++|++
T Consensus       122 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~  162 (392)
T 3b1d_A          122 VYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE  162 (392)
Confidence            9999999999999999999985 3  356999999999873

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=96.94  E-value=0.011  Score=54.94  Aligned_cols=93  Identities=14%  Similarity=-0.072  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH
Q psy1678         174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV  253 (297)
Q Consensus       174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si  253 (297)
                      .++.+.+++++|.+.+         ..+||+|||+||..|+.+++.....+    |.       .++-+|+....-|.+.
T Consensus        89 ~~l~~~la~~~~~~~~---------~v~~~~ggtea~~~ai~~~~~~~~~~----g~-------~~~~vi~~~~~yh~~~  148 (429)
T 1s0a_A           89 IELCRKLVAMTPQPLE---------CVFLADSGSVAVEVAMKMALQYWQAK----GE-------ARQRFLTFRNGYHGDT  148 (429)
T ss_dssp             HHHHHHHHHHSCTTCC---------EEEEESSHHHHHHHHHHHHHHHHHHH----TC-------CCCEEEEETTCCCCSS
T ss_pred             HHHHHHHHHhCCCCCC---------EEEEeCCHHHHHHHHHHHHHHHhccc----CC-------CCCeEEEECCCCCCCc
Confidence            3455678888886543         58999999999999999887532111    10       1223444444667666


Q ss_pred             HHHHHhcC-------------CceEEeeCCC------CCCcCHHHHHHHHHH
Q psy1678         254 ERAGLLGG-------------VTIRGLPADD------SYKLRGDALEAAIEE  286 (297)
Q Consensus       254 ~Kaa~~lg-------------~~v~~Vp~d~------~~~md~~~L~~~i~~  286 (297)
                      .-++.+.|             .+++.||++.      .+.+|+++|+++|++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  200 (429)
T 1s0a_A          149 FGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAA  200 (429)
T ss_dssp             HHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHH
T ss_pred             hhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHh
Confidence            55554433             1466777652      347999999999975

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=96.92  E-value=0.0025  Score=60.03  Aligned_cols=83  Identities=10%  Similarity=0.112  Sum_probs=60.8

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEE---cCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVI---QGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~---tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      ...+|    +.+++++|.+.           .++   +++||+||..++.+.    +.               +.-.|++
T Consensus        75 ~~~Le----~~lA~l~g~e~-----------alv~p~~~sGt~Ai~~al~al----l~---------------pGD~Vl~  120 (427)
T 3i16_A           75 RDSLD----AVYARVFNTES-----------ALVRPHFVNGTHALGAALFGN----LR---------------PGNTMLS  120 (427)
T ss_dssp             HHHHH----HHHHHHHTCSE-----------EEEETTCCSHHHHHHHHHHHH----CC---------------TTCEEEE
T ss_pred             HHHHH----HHHHHHhCCcc-----------eEEeCCCccHHHHHHHHHHHH----hC---------------CCCEEEE
Confidence            34555    46889999864           356   899999998877653    11               1124556


Q ss_pred             cC-CCcchHH-----------HHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         246 SD-QAHSSVE-----------RAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       246 s~-~aH~Si~-----------Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      +. ..|....           +++...|++++.||++++|++|+++|+++|+
T Consensus       121 ~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~  172 (427)
T 3i16_A          121 VCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLK  172 (427)
T ss_dssp             SSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHH
T ss_pred             eCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhh
Confidence            66 6676655           4455679999999999999999999999997

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=96.89  E-value=0.0056  Score=57.00  Aligned_cols=92  Identities=12%  Similarity=-0.074  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHHHHHHcCCCc-cccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         169 CTELEVVMLDWLGKMLDLPK-EFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~-~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      ......++.++++++++... +         ..+||+|||++|..|+.++|...       +         +.-+|++..
T Consensus        84 ~~~~~~~l~~~la~~~~~~~~~---------~v~~~~ggsea~~~al~~~~~~~-------~---------~~~vi~~~~  138 (439)
T 3dxv_A           84 SNAPAVTLAERLLASFPGEGTH---------KIWFGHSGSDANEAAYRAIVKAT-------G---------RSGVIAFAG  138 (439)
T ss_dssp             EEHHHHHHHHHHHHTTTCTTTE---------EEEEESSHHHHHHHHHHHHHHHH-------S---------CCEEEEETT
T ss_pred             CCHHHHHHHHHHHHhCCCCCCC---------EEEEeCCHHHHHHHHHHHHHHHh-------C---------CCEEEEECC
Confidence            44566678889999985432 2         48999999999999999987532       1         233566677


Q ss_pred             CCcchHHHHHHhcCCc--------------eEEeeCCCCCCc-----CHHHHHHHHH
Q psy1678         248 QAHSSVERAGLLGGVT--------------IRGLPADDSYKL-----RGDALEAAIE  285 (297)
Q Consensus       248 ~aH~Si~Kaa~~lg~~--------------v~~Vp~d~~~~m-----d~~~L~~~i~  285 (297)
                      .-|.+..-+..+.|..              +..+|.+..+.-     |+++|+++|+
T Consensus       139 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~  195 (439)
T 3dxv_A          139 AYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLA  195 (439)
T ss_dssp             CCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHH
Confidence            7788877777665532              345665543333     7999999985

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=96.87  E-value=0.0031  Score=60.96  Aligned_cols=120  Identities=8%  Similarity=0.026  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcC--CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         144 YPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLD--LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       144 ~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg--~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      ++.++..+...+...+  .+........+++.+.+++.+..|  .+...      ...-++|+|||+++.+++.+...+.
T Consensus       117 ~~~~v~a~~~~~~~~~--y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~------~~~i~~t~G~t~al~~~~~~l~~~~  188 (533)
T 3f6t_A          117 RDKVVAEWVNGAVANN--YPVPDRCLVNTEKIINYFLQELSYKDANLAE------QTDLFPTEGGTAAIVYAFHSLAENH  188 (533)
T ss_dssp             HHHHHHHHHHHHHTCS--CCSSSSCCHHHHHHHHHHHHHHHTTTCCCGG------GEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHhCC--CCCCcccHHHHHHHHHHHHHHhcCCCCCCCC------cceEEEECCHHHHHHHHHHHhhhhh
Confidence            4566666665555321  112334567899999999977733  22110      0148999999999999887632211


Q ss_pred             HHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC----CCCCcCHHHHHHHHH
Q psy1678         222 MQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD----DSYKLRGDALEAAIE  285 (297)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d----~~~~md~~~L~~~i~  285 (297)
                      +-              .+.-.|+++.-+|.+...++...|.+++.||++    .++.+|+++|+++++
T Consensus       189 l~--------------~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~  242 (533)
T 3f6t_A          189 LL--------------KKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD  242 (533)
T ss_dssp             SS--------------CTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC
T ss_pred             cc--------------CCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC
Confidence            10              122367788999999999999999999999985    468999999998874

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=96.86  E-value=0.0078  Score=55.02  Aligned_cols=86  Identities=16%  Similarity=-0.001  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .....++.+++++++|.+.+         ..++|+|||++|..++.+++...                .+.-+|+.+..-
T Consensus        86 ~~~~~~l~~~la~~~~~~~~---------~v~~~~gg~~a~~~al~~~~~~~----------------~~~~vi~~~~~y  140 (395)
T 1vef_A           86 TPMRGEFYRTLTAILPPELN---------RVFPVNSGTEANEAALKFARAHT----------------GRKKFVAAMRGF  140 (395)
T ss_dssp             CHHHHHHHHHHHHTSCTTEE---------EEEEESSHHHHHHHHHHHHHHHH----------------SCCEEEEETTCC
T ss_pred             CHHHHHHHHHHHHhcCCCcC---------EEEEcCcHHHHHHHHHHHHHHHh----------------CCCeEEEEcCCc
Confidence            34555677889999987543         48999999999999998876421                012345555556


Q ss_pred             cchHHHHHHhcCCc------------eEEeeCCCCCCcCHHHHHHHHH
Q psy1678         250 HSSVERAGLLGGVT------------IRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       250 H~Si~Kaa~~lg~~------------v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      |.+...++.+.|..            +..+|.     .|+++|+++|+
T Consensus       141 ~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~  183 (395)
T 1vef_A          141 SGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVD  183 (395)
T ss_dssp             CCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCC
T ss_pred             CCCchhhhhhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhc
Confidence            77777777777764            333332     47888877775

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=96.85  E-value=0.0016  Score=59.85  Aligned_cols=90  Identities=14%  Similarity=0.088  Sum_probs=57.7

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ...+|..+.+++++++|.+..          -+++++||++|..++.+...                   +.-.|+++..
T Consensus        74 ~~~~~~~~~~~la~~~~~~~~----------~v~~~sGs~a~~~a~~~~~~-------------------~gd~v~~~~~  124 (420)
T 3gbx_A           74 VDVVEQLAIDRAKELFGADYA----------NVQPHSGSQANFAVYTALLQ-------------------PGDTVLGMNL  124 (420)
T ss_dssp             CHHHHHHHHHHHHHHHTCSEE----------ECCCSSHHHHHHHHHHHHCC-------------------TTCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCc----------eeEecCcHHHHHHHHHHhcC-------------------CCCEEEecch
Confidence            356787788999999999653          34455669999988866411                   1124666778


Q ss_pred             CcchHHH---HHHhcCC--ceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         249 AHSSVER---AGLLGGV--TIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       249 aH~Si~K---aa~~lg~--~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      .|.+...   .....|.  ..+.+++|+++.+|+++|+++|++.
T Consensus       125 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~  168 (420)
T 3gbx_A          125 AQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEH  168 (420)
T ss_dssp             C------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHH
T ss_pred             hhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhc
Confidence            8877442   2223343  4556677888999999999999864

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=96.83  E-value=0.0012  Score=60.81  Aligned_cols=119  Identities=10%  Similarity=0.052  Sum_probs=73.5

Q ss_pred             cccCCCCC-CHHHHHHHHHHHhcc--ccc-cccc---cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEE-cCCh
Q psy1678         135 HAYFPTAN-SYPAIVADILSDSIA--CIG-FTWI---ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVI-QGTA  206 (297)
Q Consensus       135 ~g~~~s~~-~~~svl~d~l~~~lN--~n~-~~~~---~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~-tsGG  206 (297)
                      +.+.++++ .++.|+..+...+.+  .|+ ..++   .++-+..+=.++.+.+++++|.++..        .-+| |+||
T Consensus         7 ~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~--------~v~f~t~~~   78 (361)
T 3m5u_A            7 INFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDY--------EVLFLQGGA   78 (361)
T ss_dssp             EECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTE--------EEEEESSHH
T ss_pred             EeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCc--------eEEEEcCcH
Confidence            33444443 455655544443332  222 2221   24445555557899999999997431        4777 9999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCC--cCHHH
Q psy1678         207 SEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYK--LRGDA  279 (297)
Q Consensus       207 T~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~--md~~~  279 (297)
                      |+++-.++...-    +     +        ..-.+++++..+|.++..+.+ .|++|+.|++|.++.  .+++.
T Consensus        79 T~a~n~~~~~~~----~-----~--------~~~~~i~~~~~~~~~~~~a~~-~G~~v~~~~~~~~g~~~~~~~~  135 (361)
T 3m5u_A           79 SLQFAMIPMNLA----L-----N--------GVCEYANTGVWTKKAIKEAQI-LGVNVKTVASSEESNFDHIPRV  135 (361)
T ss_dssp             HHHHHHHHHHHC----C-----S--------SCEEEEECSHHHHHHHHHHHH-TTCCEEEEEECTTTTSCSCCCC
T ss_pred             HHHHHHHHHhcC----C-----C--------CeEEEEeCCHHHHHHHHHHHH-cCCceEEEecccCcCCCcCChh
Confidence            999988777531    1     1        122357777777766655444 589999999998875  56655

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=96.78  E-value=0.0045  Score=57.48  Aligned_cols=79  Identities=18%  Similarity=0.134  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc
Q psy1678         172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS  251 (297)
Q Consensus       172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~  251 (297)
                      .-.++.+++++++|.+           ..+||+|||+||..++.+..    .               +.-.|+++...|.
T Consensus        57 ~~~~l~~~la~~~g~~-----------~~~~~~~gt~a~~~al~~l~----~---------------~gd~vi~~~~~~~  106 (412)
T 2cb1_A           57 TAKALEERLKALEGAL-----------EAVVLASGQAATFAALLALL----R---------------PGDEVVAAKGLFG  106 (412)
T ss_dssp             HHHHHHHHHHHHHTCS-----------EEEEESSHHHHHHHHHHTTC----C---------------TTCEEEEETTCCH
T ss_pred             HHHHHHHHHHHHhCCC-----------cEEEECCHHHHHHHHHHHHh----C---------------CCCEEEEeCCCch
Confidence            3445667888999875           28899999999999988751    1               1125677889999


Q ss_pred             hHHHHH----HhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         252 SVERAG----LLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       252 Si~Kaa----~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +.....    ...|++++.+|+|      +++|+++|++
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~~~------~~~l~~~i~~  139 (412)
T 2cb1_A          107 QTIGLFGQVLSLMGVTVRYVDPE------PEAVREALSA  139 (412)
T ss_dssp             HHHHHHHHTTTTTTCEEEEECSS------HHHHHHHCCT
T ss_pred             hHHHHHHHHHHHcCCEEEEECCC------HHHHHHHhcc
Confidence            877764    4468888888875      7788777753

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=96.77  E-value=0.011  Score=54.85  Aligned_cols=88  Identities=10%  Similarity=0.003  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHcCCC-ccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc
Q psy1678         173 EVVMLDWLGKMLDLP-KEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS  251 (297)
Q Consensus       173 E~~v~~~l~~llg~~-~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~  251 (297)
                      ..++.+.+++.+|.+ .+         .-+||+||||+|..|+.+++...                 ++-+|+....-|.
T Consensus        88 ~~~l~~~la~~~~~~~~~---------~v~~~~gg~ea~~~ai~~~~~~~-----------------~~~vi~~~p~yh~  141 (419)
T 2eo5_A           88 QLELAKKLVTYSPGNFQK---------KVFFSNSGTEAIEASIKVVKNTG-----------------RKYIIAFLGGFHG  141 (419)
T ss_dssp             HHHHHHHHHHHSSCSSCE---------EEEEESSHHHHHHHHHHHHHTTS-----------------CCEEEEETTCCCC
T ss_pred             HHHHHHHHHHhCCCCcCC---------EEEEeCchHHHHHHHHHHHHHhh-----------------CCcEEEECCCcCC
Confidence            345667889999885 32         48999999999999999886421                 1234555556676


Q ss_pred             hHHHHHHhcC-------------CceEEeeCCCCCC----------------cCHHHHH-HHHHH
Q psy1678         252 SVERAGLLGG-------------VTIRGLPADDSYK----------------LRGDALE-AAIEE  286 (297)
Q Consensus       252 Si~Kaa~~lg-------------~~v~~Vp~d~~~~----------------md~~~L~-~~i~~  286 (297)
                      +..-++.+.|             .+++.||.+++++                +|+++|+ ++|++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~  206 (419)
T 2eo5_A          142 RTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVN  206 (419)
T ss_dssp             SSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHH
T ss_pred             CCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhh
Confidence            6666654432             2688899876654                4788999 88874

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=96.75  E-value=0.0048  Score=57.31  Aligned_cols=98  Identities=10%  Similarity=0.013  Sum_probs=61.8

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHH-HHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATL-VALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl-~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      ...+.+.    +++.+|.+++         .-++|+|++++++ ..+..+-.   ... ..|....  .....-.|++.+
T Consensus        78 ~~~lr~~----ia~~~~~~~~---------~i~~t~G~~~al~l~~~~~~l~---~~~-~~g~~~~--~~~d~~~Vl~~~  138 (422)
T 3d6k_A           78 IADIREL----WAEALGLPAD---------LVVAQDGSSLNIMFDLISWSYT---WGN-NDSSRPW--SAEEKVKWLCPV  138 (422)
T ss_dssp             CHHHHHH----HHHHHTCCGG---------GEEECSSCHHHHHHHHHHHHHH---HCC-TTCSSCG--GGSSCCEEEEEE
T ss_pred             CHHHHHH----HHHHhCCChh---------HEEEecchHHHHHHHHHHHHhc---Ccc-ccccccc--ccCCCCEEEEeC
Confidence            4445544    4444577654         5889999999974 33322211   100 0000000  000012466778


Q ss_pred             CCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         248 QAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       248 ~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      -+|.....++...|.+++.||+|++| +|+++|++++++
T Consensus       139 p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~  176 (422)
T 3d6k_A          139 PGYDRHFTITEHFGFEMINVPMTDEG-PDMGVVRELVKD  176 (422)
T ss_dssp             SCCHHHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHTS
T ss_pred             CccHHHHHHHHHcCCEEEecCCCCCC-CCHHHHHHHHhc
Confidence            89999999999999999999998876 999999998853

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=96.74  E-value=0.0035  Score=58.65  Aligned_cols=79  Identities=8%  Similarity=0.026  Sum_probs=58.5

Q ss_pred             HHHHHHcCCCccccccCCCCCCeEE---cCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC-CCcchH
Q psy1678         178 DWLGKMLDLPKEFLACSGGKGGGVI---QGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD-QAHSSV  253 (297)
Q Consensus       178 ~~l~~llg~~~~~~~~~~~~~~G~~---tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-~aH~Si  253 (297)
                      +.+++++|.+.           .++   |++||+||..++.+.    +.               +.-.|+++. ..|...
T Consensus        66 ~~lA~l~g~e~-----------alv~p~~~sGt~Ai~~al~al----l~---------------~GD~Vl~~~~~~y~~~  115 (409)
T 3jzl_A           66 RVYATVFKTEA-----------ALVRPQIISGTHAISTVLFGI----LR---------------PDDELLYITGQPYDTL  115 (409)
T ss_dssp             HHHHHHHTCSE-----------EEEETTSCSHHHHHHHHHHHH----CC---------------TTCEEEECSSSCCTTH
T ss_pred             HHHHHHhCCCc-----------EEEECCCccHHHHHHHHHHHh----cC---------------CCCEEEEeCCCCcHhH
Confidence            36788888864           455   899999998887753    11               112455665 777777


Q ss_pred             HH----------HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         254 ER----------AGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       254 ~K----------aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ..          .+...|+.++.||++++|.+|+++|+++|++
T Consensus       116 ~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~  158 (409)
T 3jzl_A          116 EEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP  158 (409)
T ss_dssp             HHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT
T ss_pred             HHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC
Confidence            64          3455688999999999999999999998864

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=96.73  E-value=0.007  Score=54.65  Aligned_cols=73  Identities=8%  Similarity=0.038  Sum_probs=56.4

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+++++++|.+.+         .-+||+|||+++..++.+..+                   +.-.|+++..+|.++.
T Consensus        69 ~lr~~la~~~g~~~~---------~i~~t~g~~~al~~~~~~l~~-------------------~gd~Vl~~~p~~~~~~  120 (360)
T 3hdo_A           69 KLREVAGELYGFDPS---------WIIMANGSDEVLNNLIRAFAA-------------------EGEEIGYVHPSYSYYG  120 (360)
T ss_dssp             HHHHHHHHHHTCCGG---------GEEEESSHHHHHHHHHHHHCC-------------------TTCEEEEESSSCTHHH
T ss_pred             HHHHHHHHHhCcCcc---------eEEEcCCHHHHHHHHHHHHhC-------------------CCCEEEEcCCChHHHH
Confidence            455677778887653         589999999999998876411                   1124667889999999


Q ss_pred             HHHHhcCCceEEeeCCCCCCc
Q psy1678         255 RAGLLGGVTIRGLPADDSYKL  275 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~m  275 (297)
                      .++...|.+++.||+++++.+
T Consensus       121 ~~~~~~g~~~~~v~~~~~~~~  141 (360)
T 3hdo_A          121 TLAEVQGARVRTFGLTGDFRI  141 (360)
T ss_dssp             HHHHHHTCEEEEECBCTTSSB
T ss_pred             HHHHHCCCEEEEeeCCCCCCH
Confidence            999999999999998877665

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=96.72  E-value=0.00054  Score=63.61  Aligned_cols=125  Identities=12%  Similarity=0.069  Sum_probs=77.1

Q ss_pred             cccCCCCCCHHHHHHHHHHHhccc--cc-cc---cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEE-cCChh
Q psy1678         135 HAYFPTANSYPAIVADILSDSIAC--IG-FT---WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVI-QGTAS  207 (297)
Q Consensus       135 ~g~~~s~~~~~svl~d~l~~~lN~--n~-~~---~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~-tsGGT  207 (297)
                      ++..++.+.+..|+..+...+.|.  |+ ..   ...++-+..+=.++.+.+++++|.++..        .-+| |+|||
T Consensus        16 ~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~--------evif~t~~~T   87 (377)
T 3e77_A           16 ENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNY--------KVIFLQGGGC   87 (377)
T ss_dssp             CCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTE--------EEEEESSHHH
T ss_pred             ccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCC--------eEEEEcCchH
Confidence            444455566777766555544322  22 21   2234556666667999999999997531        4788 58999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHh---cCCceEEeeCCCCCCcCHHHHHHHH
Q psy1678         208 EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAI  284 (297)
Q Consensus       208 ~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~i  284 (297)
                      +++-.++...-.   ++             ..+ .+....+.|++- +.+.+   .|+.++.+|+|.++..+++.++.+|
T Consensus        88 ~a~n~a~~~l~~---~~-------------~Gd-~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i  149 (377)
T 3e77_A           88 GQFSAVPLNLIG---LK-------------AGR-CADYVVTGAWSA-KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNL  149 (377)
T ss_dssp             HHHHHHHHHHGG---GS-------------TTC-EEEECCCSHHHH-HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCC
T ss_pred             HHHHHHHHhccC---CC-------------CCC-eEEEEECCHHHH-HHHHHHHHhCCceEEeccCCCcCCCCChHHhcc
Confidence            999888775311   00             011 233455677764 44444   4767777899877788888776555


Q ss_pred             H
Q psy1678         285 E  285 (297)
Q Consensus       285 ~  285 (297)
                      +
T Consensus       150 ~  150 (377)
T 3e77_A          150 N  150 (377)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=96.71  E-value=0.0073  Score=55.47  Aligned_cols=82  Identities=13%  Similarity=-0.031  Sum_probs=55.1

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEE-cCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVI-QGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG  243 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~-tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i  243 (297)
                      .+|....+..++.+++++++|.+..        ...+| |+|||++|..++.+..                   .++ ++
T Consensus        72 ~~~~~~~~~~~~~~~la~~~g~~~~--------~~i~~~t~g~t~al~~~~~~l~-------------------~~g-v~  123 (398)
T 2fyf_A           72 RQAPVKNLVGRVRSGLAELFSLPDG--------YEVILGNGGATAFWDAAAFGLI-------------------DKR-SL  123 (398)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTTCCTT--------CEEEEEETCHHHHHHHHHHHTC-------------------SSC-EE
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCC--------ceEEEeCCchhHHHHHHHHHhc-------------------CCC-eE
Confidence            3566666777899999999999732        14788 9999999998887741                   012 23


Q ss_pred             EecCCCcch-HHHHHHhc--CCceEEeeCCCCCCc
Q psy1678         244 YCSDQAHSS-VERAGLLG--GVTIRGLPADDSYKL  275 (297)
Q Consensus       244 ~~s~~aH~S-i~Kaa~~l--g~~v~~Vp~d~~~~m  275 (297)
                      +++...|.. ..+.+...  |..++.||++ +|.+
T Consensus       124 ~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~g~~  157 (398)
T 2fyf_A          124 HLTYGEFSAKFASAVSKNPFVGEPIIITSD-PGSA  157 (398)
T ss_dssp             EEECSHHHHHHHHHHHHCTTSCCCEEEECC-TTCC
T ss_pred             EEeCCHHHHHHHHHHHHhCCCCceEEEecC-CCCC
Confidence            335455532 23345555  7889999998 4443

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=96.68  E-value=0.0056  Score=56.26  Aligned_cols=89  Identities=12%  Similarity=0.161  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      ..+|....+++++++|.+..          -++|+|||++|..++.+..+                   +.-.|+++..+
T Consensus        77 ~~~~~~a~~~~~~~~~~~~~----------~v~~~~Gs~a~~~al~~~~~-------------------~gd~Vi~~~~~  127 (425)
T 3ecd_A           77 DEVEALAIERVKRLFNAGHA----------NVQPHSGAQANGAVMLALAK-------------------PGDTVLGMSLD  127 (425)
T ss_dssp             CHHHHHHHHHHHHHHTCSEE----------ECCCSSHHHHHHHHHHHHCC-------------------TTCEEEEECC-
T ss_pred             HHHHHHHHHHHHHHhCCCCc----------eeecCchHHHHHHHHHHccC-------------------CCCEEEEcccc
Confidence            45676666889999998752          45699999999988876511                   11246677888


Q ss_pred             cch-HHHHHH--hcCC--ceEEeeCC-CCCCcCHHHHHHHHHHH
Q psy1678         250 HSS-VERAGL--LGGV--TIRGLPAD-DSYKLRGDALEAAIEED  287 (297)
Q Consensus       250 H~S-i~Kaa~--~lg~--~v~~Vp~d-~~~~md~~~L~~~i~~~  287 (297)
                      |.+ +..++.  ..|.  .++.++++ +++.+|+++|+++|.+.
T Consensus       128 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~  171 (425)
T 3ecd_A          128 AGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQH  171 (425)
T ss_dssp             -----------------CEEEEECCCTTTSSCCHHHHHHHHHHH
T ss_pred             cccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhc
Confidence            988 333333  4455  44556666 45899999999999753

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=96.66  E-value=0.0079  Score=56.84  Aligned_cols=97  Identities=14%  Similarity=-0.083  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH  250 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH  250 (297)
                      ....++.++++++++.+.+         ..+||+|||+||..|++++|.....+    |.      ..++.+|.....-|
T Consensus       118 ~~~~~L~e~la~~~~~~~~---------~v~~~~sGseA~~~Alk~a~~~~~~~----g~------~g~~~ii~~~~~yh  178 (457)
T 3tfu_A          118 EPAARLAKLLVDITPAGLD---------TVFFSDSGSVSVEVAAKMALQYWRGR----GL------PGKRRLMTWRGGYH  178 (457)
T ss_dssp             HHHHHHHHHHHHHSSTTEE---------EEEEESSHHHHHHHHHHHHHHHHHHT----TC------TTCCEEEEETTCCC
T ss_pred             HHHHHHHHHHHHhCCCCcC---------EEEEeCcHHHHHHHHHHHHHHHHHhc----CC------CCCceEEEEcCCcC
Confidence            3445677889999976543         48999999999999999999864321    10      01223444444555


Q ss_pred             chHHHHHHhc-------------CCceEEeeC--CCCCCcCHHHHHHHHHH
Q psy1678         251 SSVERAGLLG-------------GVTIRGLPA--DDSYKLRGDALEAAIEE  286 (297)
Q Consensus       251 ~Si~Kaa~~l-------------g~~v~~Vp~--d~~~~md~~~L~~~i~~  286 (297)
                      -+..-+..+.             ...+..+|.  +..+..|+++|+++|++
T Consensus       179 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~  229 (457)
T 3tfu_A          179 GDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQ  229 (457)
T ss_dssp             CSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred             CccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHh
Confidence            4443333331             113444444  33344689999999975

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=96.65  E-value=0.0033  Score=58.57  Aligned_cols=111  Identities=7%  Similarity=-0.033  Sum_probs=65.5

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCC-CCCcCCCCce
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPD-WKDSDIIANL  241 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~-~~~~~~~~~~  241 (297)
                      |........+++.+.+|+.+..|++-+.       ..-+||+|||++|..++.+....     + ...+ +.+.+.....
T Consensus        79 y~~~~g~~~lr~~ia~~l~~~~g~~~~~-------~~i~~t~G~t~al~~~~~~l~~~-----g-d~~~~~~~~~~g~~~  145 (444)
T 3if2_A           79 YSNPQGDSAFIDALVGFFNRHYDWNLTS-------ENIALTNGSQNAFFYLFNLFGGA-----F-VNEHSQDKESKSVDK  145 (444)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHCCCCCG-------GGEEEESSHHHHHHHHHHHSSEE-----E-ECC-------CEEEE
T ss_pred             cCCCCCCHHHHHHHHHHHHhhcCCCCCH-------HHEEEecCcHHHHHHHHHHHhCC-----C-ccccccccccccccc
Confidence            4444456789999999999888865221       25899999999999988775211     0 0000 0000000001


Q ss_pred             EEEec-CCCcchHHHHH------HhcCCceEEeeCCC-C----CCcCHHHHHHHHHH
Q psy1678         242 VGYCS-DQAHSSVERAG------LLGGVTIRGLPADD-S----YKLRGDALEAAIEE  286 (297)
Q Consensus       242 ~i~~s-~~aH~Si~Kaa------~~lg~~v~~Vp~d~-~----~~md~~~L~~~i~~  286 (297)
                      .++++ .-+|.+...++      .-.|..++.+|+|+ +    +.+|+++|+++|++
T Consensus       146 ~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~  202 (444)
T 3if2_A          146 SILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPAL  202 (444)
T ss_dssp             EEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHH
T ss_pred             eEEEeCCCCccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHh
Confidence            23443 44555554432      22456778888876 3    37999999988654

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=96.64  E-value=0.0071  Score=55.87  Aligned_cols=77  Identities=19%  Similarity=-0.003  Sum_probs=58.2

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+.+++++|.+.           .++|+|||+||..++.+...                   +.-.|+++...|.+..
T Consensus        70 ~l~~~la~~~g~~~-----------~~~~~sGt~A~~~al~~~~~-------------------~gd~Vi~~~~~y~~~~  119 (392)
T 3qhx_A           70 ALEAALAAVEDAAF-----------GRAFSSGMAAADCALRAMLR-------------------PGDHVVIPDDAYGGTF  119 (392)
T ss_dssp             HHHHHHHHHTTCSE-----------EEEESSHHHHHHHHHHHHCC-------------------TTCEEEEETTCCHHHH
T ss_pred             HHHHHHHHHhCCCc-----------EEEECCHHHHHHHHHHHHhC-------------------CCCEEEEeCCCcchHH
Confidence            34557788888753           88999999999999886511                   1125778899998877


Q ss_pred             HHH----HhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 RAG----LLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa----~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ..+    ...|++++.||++     |+++|+++|++
T Consensus       120 ~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~  150 (392)
T 3qhx_A          120 RLIDKVFTGWNVEYTPVALA-----DLDAVRAAIRP  150 (392)
T ss_dssp             HHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCT
T ss_pred             HHHHHHHHhcCcEEEEeCCC-----CHHHHHHhhCC
Confidence            766    5578888888876     88888888763

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=96.64  E-value=0.0022  Score=57.55  Aligned_cols=73  Identities=15%  Similarity=0.155  Sum_probs=56.9

Q ss_pred             HHHHHHHHcC---CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch
Q psy1678         176 MLDWLGKMLD---LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS  252 (297)
Q Consensus       176 v~~~l~~llg---~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S  252 (297)
                      +.+.+++++|   .+++         .-++|+|||+++..++.+.     .                + .|++. -+|.+
T Consensus        61 lr~~la~~~~~~~~~~~---------~v~~~~G~~~al~~~~~~~-----g----------------d-~Vl~~-p~y~~  108 (335)
T 1uu1_A           61 LIEKILSYLDTDFLSKN---------NVSVGNGADEIIYVMMLMF-----D----------------R-SVFFP-PTYSC  108 (335)
T ss_dssp             HHHHHHHHHTCSSCCGG---------GEEEESSHHHHHHHHHHHS-----S----------------E-EEECS-SSCHH
T ss_pred             HHHHHHHHcCCCCCCHH---------HEEEcCChHHHHHHHHHHh-----C----------------C-cEEEC-CCcHH
Confidence            4445666666   5543         5899999999998887764     1                1 46677 89999


Q ss_pred             HHHHHHhcCCceEEeeCCCCCCcCHHHH
Q psy1678         253 VERAGLLGGVTIRGLPADDSYKLRGDAL  280 (297)
Q Consensus       253 i~Kaa~~lg~~v~~Vp~d~~~~md~~~L  280 (297)
                      ...++...|.+++.||+++++.+|+++|
T Consensus       109 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l  136 (335)
T 1uu1_A          109 YRIFAKAVGAKFLEVPLTKDLRIPEVNV  136 (335)
T ss_dssp             HHHHHHHHTCEEEECCCCTTSCCCCCCC
T ss_pred             HHHHHHHcCCeEEEeccCCCCCCCHHHc
Confidence            9999999999999999988888888776

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=96.60  E-value=0.0089  Score=55.85  Aligned_cols=77  Identities=16%  Similarity=0.011  Sum_probs=57.6

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.++++++.|.+           ..++|+||++++..++.+...                   +.-.|+++..+|.+..
T Consensus        85 ~l~~~la~~~g~~-----------~~~~~~sG~~Ai~~al~~l~~-------------------~Gd~Vi~~~~~y~~~~  134 (414)
T 3ndn_A           85 VFEERLRLIEGAP-----------AAFATASGMAAVFTSLGALLG-------------------AGDRLVAARSLFGSCF  134 (414)
T ss_dssp             HHHHHHHHHHTCS-----------EEEEESSHHHHHHHHHHTTCC-------------------TTCEEEEESCCCHHHH
T ss_pred             HHHHHHHHHHCCC-----------cEEEECCHHHHHHHHHHHHhC-------------------CCCEEEEcCCccchHH
Confidence            3446788888864           378999999999888766411                   1125677888999887


Q ss_pred             HHHHh----cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 RAGLL----GGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa~~----lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .++..    +|++++.||.+     |+++|+++|++
T Consensus       135 ~~~~~~~~~~g~~~~~v~~~-----d~~~l~~ai~~  165 (414)
T 3ndn_A          135 VVCSEILPRWGVQTVFVDGD-----DLSQWERALSV  165 (414)
T ss_dssp             HHHHTHHHHTTCEEEEECTT-----CHHHHHHHTSS
T ss_pred             HHHHHHHHHcCcEEEEeCCC-----CHHHHHHhcCC
Confidence            77754    89999999887     88988888753

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=96.59  E-value=0.0098  Score=55.93  Aligned_cols=83  Identities=19%  Similarity=0.144  Sum_probs=61.4

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|....+|    +++++++|.+.           .+++++|++||..++.+.    +.               +.-.|+
T Consensus        80 ~~p~~~~le----~~lA~l~g~~~-----------~v~~~sG~~Ai~~al~al----~~---------------~Gd~Vi  125 (430)
T 3ri6_A           80 SNPTVEDLE----QRLKNLTGALG-----------VLALGSGMAAISTAILTL----AR---------------AGDSVV  125 (430)
T ss_dssp             CCHHHHHHH----HHHHHHHTCSE-----------EEEESCHHHHHHHHHHHH----CC---------------TTCEEE
T ss_pred             CCHHHHHHH----HHHHHHHCCCc-----------EEEECCHHHHHHHHHHHH----hC---------------CCCEEE
Confidence            345555555    47788888753           778888999999888765    11               122577


Q ss_pred             ecCCCcchHHH----HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSVER----AGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si~K----aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...|.+...    .+..+|++++.|+.+     |+++|+++|++
T Consensus       126 ~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-----d~~~l~~ai~~  166 (430)
T 3ri6_A          126 TTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-----DSLAVEHACDE  166 (430)
T ss_dssp             EETTCCHHHHHHHHTHHHHTTCEEEEECTT-----CHHHHHHHCCT
T ss_pred             EcCCCchhHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhhCC
Confidence            88999988887    667789999999887     88888888753

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=96.59  E-value=0.0025  Score=60.03  Aligned_cols=87  Identities=11%  Similarity=0.043  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC-CCcc
Q psy1678         173 EVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD-QAHS  251 (297)
Q Consensus       173 E~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-~aH~  251 (297)
                      ..++.+++++++|.+...        .-+++++||+||..++.+..    .              ..+ .|+++. ..|.
T Consensus        67 ~~~l~~~la~~~g~~~~~--------~~i~~~sGt~Ai~~al~al~----~--------------~Gd-~Vl~~~~~~y~  119 (431)
T 3ht4_A           67 RDTLEKVYADVFGAEAGL--------VRPQIISGTHAISTALFGIL----R--------------PGD-ELLYITGKPYD  119 (431)
T ss_dssp             HHHHHHHHHHHTTCSEEC--------CBTTSCSHHHHHHHHHHTTC----C--------------TTC-EEEECSSSCCT
T ss_pred             HHHHHHHHHHHhCCCccc--------ccceeeCHHHHHHHHHHHhC----C--------------CCC-EEEEeCCCCch
Confidence            345667899999997531        12224578999988876531    0              112 455565 7899


Q ss_pred             hHHHHHHh----------cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         252 SVERAGLL----------GGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       252 Si~Kaa~~----------lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +...++.+          +|++++.||.+++|.+|+++|+++|++
T Consensus       120 ~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~  164 (431)
T 3ht4_A          120 TLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS  164 (431)
T ss_dssp             THHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT
T ss_pred             hHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC
Confidence            88877654          688999999999999999999998863

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=96.55  E-value=0.027  Score=52.53  Aligned_cols=97  Identities=18%  Similarity=0.064  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH  250 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH  250 (297)
                      ....++.+.++++++.+.+         .-+||+|||+||..|+.+++.....+    |.      ..++-+|+.+..-|
T Consensus        93 ~~~~~l~~~la~~~~~~~~---------~v~~~~ggsea~~~al~~~~~~~~~~----g~------~~~~~vi~~~~~yh  153 (449)
T 3a8u_X           93 PLSFQLAEKITDLTPGNLN---------HVFFTDSGSECALTAVKMVRAYWRLK----GQ------ATKTKMIGRARGYH  153 (449)
T ss_dssp             HHHHHHHHHHHTTSSTTEE---------EEEEESSHHHHHHHHHHHHHHHHHHT----TC------TTCCEEEEETTCCC
T ss_pred             HHHHHHHHHHHHhCCCCCC---------EEEEcCcHHHHHHHHHHHHHHHHHhc----CC------CCCCEEEEECCCcC
Confidence            3444566788888865443         48999999999999999998643211    10      01234555677778


Q ss_pred             chHHHHHHhcCC------------ceEEeeCCCCC-----CcC--------HHHHHHHHHH
Q psy1678         251 SSVERAGLLGGV------------TIRGLPADDSY-----KLR--------GDALEAAIEE  286 (297)
Q Consensus       251 ~Si~Kaa~~lg~------------~v~~Vp~d~~~-----~md--------~~~L~~~i~~  286 (297)
                      .+...+..+.|.            +++.|+++..+     .+|        +++|+++|++
T Consensus       154 g~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~  214 (449)
T 3a8u_X          154 GVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIEL  214 (449)
T ss_dssp             CSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHH
T ss_pred             CCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHh
Confidence            777777766552            46777765422     257        9999999975

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=96.53  E-value=0.011  Score=53.36  Aligned_cols=88  Identities=13%  Similarity=0.076  Sum_probs=57.7

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      +|....+-.++.+++++++|.+++.       ..-++|+|||++|..++.+.    +.              ..+ .|++
T Consensus        44 ~~~~~~~~~~~~~~la~~~g~~~~~-------~~i~~t~g~t~a~~~~~~~l----~~--------------~gd-~vl~   97 (362)
T 2c0r_A           44 GAVYEAVHNEAQARLLALLGNPTGY-------KVLFIQGGASTQFAMIPMNF----LK--------------EGQ-TANY   97 (362)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCSSE-------EEEEESSHHHHHHHHHHHHH----CC--------------TTC-EEEE
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCCCc-------EEEEECCCchHHHHHHHHhc----CC--------------CCC-eEEE
Confidence            4555556667999999999997521       02467899999999887763    11              012 2334


Q ss_pred             cCCCcch--HHHHHHhcCCceEEeeCCC--CC--CcCHHHH
Q psy1678         246 SDQAHSS--VERAGLLGGVTIRGLPADD--SY--KLRGDAL  280 (297)
Q Consensus       246 s~~aH~S--i~Kaa~~lg~~v~~Vp~d~--~~--~md~~~L  280 (297)
                      ....|++  +...+...| +++.||++.  ++  ..|.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~  137 (362)
T 2c0r_A           98 VMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEI  137 (362)
T ss_dssp             EECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGC
T ss_pred             EecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHc
Confidence            4466776  346777789 999999872  22  3566554

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=96.50  E-value=0.012  Score=54.54  Aligned_cols=77  Identities=8%  Similarity=-0.030  Sum_probs=57.7

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+.+++++|.++           .++++||++++..++.+.    ..               +.-.|+++...|.+..
T Consensus        66 ~l~~~ia~~~g~~~-----------~i~~~~g~~ai~~~~~~l----~~---------------~gd~Vl~~~~~y~~~~  115 (404)
T 1e5e_A           66 NLEGKIAFLEKTEA-----------CVATSSGMGAIAATVLTI----LK---------------AGDHLISDECLYGCTH  115 (404)
T ss_dssp             HHHHHHHHHHTCSE-----------EEEESSHHHHHHHHHHHH----CC---------------TTCEEEEESCCCHHHH
T ss_pred             HHHHHHHHHhCCCc-----------EEEeCChHHHHHHHHHHH----hC---------------CCCEEEEeCCCchhHH
Confidence            34557777778752           788899999998888764    11               1125677899999988


Q ss_pred             H----HHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 R----AGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 K----aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .    ++...|++++.||++     |+++|+++|++
T Consensus       116 ~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~  146 (404)
T 1e5e_A          116 ALFEHALTKFGIQVDFINTA-----IPGEVKKHMKP  146 (404)
T ss_dssp             HHHHTHHHHTTCEEEEECTT-----STTHHHHHCCT
T ss_pred             HHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCC
Confidence            8    788889999999887     77888877753

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=96.47  E-value=0.00014  Score=67.72  Aligned_cols=94  Identities=10%  Similarity=-0.006  Sum_probs=58.4

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEE-cCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc-eEE
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVI-QGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN-LVG  243 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~-tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~-~~i  243 (297)
                      ++.+..+=.++...+++++|.++..        .-+| |+|||+++.+++...    +.    .+         .+ +++
T Consensus        67 ~~~~~~~~~~ar~~la~ll~~~~~~--------evif~t~~~T~a~n~ai~~l----~~----~g---------d~v~~~  121 (386)
T 3qm2_A           67 GKEFIQVAEEAEQDFRDLLNIPSNY--------KVLFCHGGGRGQFAGVPLNL----LG----DK---------TTADYV  121 (386)
T ss_dssp             ------CCHHHHHHHHHHHTCCTTE--------EEEEEESCTTHHHHHHHHHH----CT----TC---------CEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCc--------eEEEEcCCchHHHHHHHHhc----cC----CC---------CeEEEE
Confidence            3444444456889999999997521        3788 699999998887653    11    01         12 234


Q ss_pred             EecCCCcchHHHHHHhcCCceEEeeCC--CCCC-cCHHHHHHHHHH
Q psy1678         244 YCSDQAHSSVERAGLLGGVTIRGLPAD--DSYK-LRGDALEAAIEE  286 (297)
Q Consensus       244 ~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~-md~~~L~~~i~~  286 (297)
                      .++..+|.++.. ++-.| .|+.||+|  +.|. ++++.++++|++
T Consensus       122 ~~~~~~~~~~~~-a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~  165 (386)
T 3qm2_A          122 DAGYWAASAIKE-AKKYC-APQIIDAKITVDGKRAVKPMREWQLSD  165 (386)
T ss_dssp             ESSHHHHHHHHH-HTTTS-EEEEEECEEEETTEEEECCGGGCCCCT
T ss_pred             eCCHHHHHHHHH-HHHhC-CeEEEecCcccCCCCCCchHHHhhcCC
Confidence            444444543333 33457 89999999  7786 888888776654

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=96.47  E-value=0.0067  Score=54.49  Aligned_cols=67  Identities=10%  Similarity=0.048  Sum_probs=54.4

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+++++++|.+++         .-++|+|||+++..++.+..          |          + .|+++.-+|.++.
T Consensus        54 ~lr~~la~~~~~~~~---------~i~~t~g~~~al~~~~~~l~----------g----------d-~Vi~~~p~~~~~~  103 (350)
T 3fkd_A           54 TLRQMLAKRNSVDNN---------AILVTNGPTAAFYQIAQAFR----------G----------S-RSLIAIPSFAEYE  103 (350)
T ss_dssp             HHHHHHHHHTTCCGG---------GEEEESHHHHHHHHHHHHTT----------T----------C-EEEEEESCCHHHH
T ss_pred             HHHHHHHHHhCcCHH---------HEEEcCCHHHHHHHHHHHHC----------C----------C-EEEEeCCCcHHHH
Confidence            466788999998754         58999999999988887643          1          1 4667788999999


Q ss_pred             HHHHhcCCceEEeeC-CC
Q psy1678         255 RAGLLGGVTIRGLPA-DD  271 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~-d~  271 (297)
                      .++...|.+++.||+ ++
T Consensus       104 ~~~~~~g~~~~~v~~~~~  121 (350)
T 3fkd_A          104 DACRMYEHEVCFYPSNED  121 (350)
T ss_dssp             HHHHHTTCEEEEEETTSC
T ss_pred             HHHHHcCCeEEEEecCCc
Confidence            999999999999998 65

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=96.45  E-value=0.014  Score=53.66  Aligned_cols=77  Identities=14%  Similarity=-0.006  Sum_probs=57.1

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+.+++++|.+.           .+++++||+||..++.+...                   +.-.|+++...|.+..
T Consensus        69 ~l~~~la~~~g~~~-----------~i~~~sG~~a~~~~l~~~~~-------------------~gd~vl~~~~~~~~~~  118 (398)
T 1gc0_A           69 LLEARMASLEGGEA-----------GLALASGMGAITSTLWTLLR-------------------PGDEVLLGNTLYGCTF  118 (398)
T ss_dssp             HHHHHHHHHHTCSE-----------EEEESSHHHHHHHHHHHHCC-------------------TTCEEEEESSCCSHHH
T ss_pred             HHHHHHHHHhCCCc-----------EEEECCHHHHHHHHHHHHhc-------------------CCCEEEEeCCCchhHH
Confidence            34557778888762           67788889999999887611                   1125778899999988


Q ss_pred             HHH----HhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 RAG----LLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Kaa----~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .++    ...|+.++.++.+     |+++|+++|++
T Consensus       119 ~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~  149 (398)
T 1gc0_A          119 AFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTP  149 (398)
T ss_dssp             HHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCT
T ss_pred             HHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCC
Confidence            876    5678888888874     78888888753

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=96.43  E-value=0.026  Score=52.56  Aligned_cols=76  Identities=14%  Similarity=0.045  Sum_probs=56.5

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +.+.+++++|.+.           .+++++||+||..++.+..    .               +.-.|+++..+|.+...
T Consensus        63 l~~~la~~~g~~~-----------~v~~~sGt~A~~~~l~~~~----~---------------~gd~vi~~~~~~~~~~~  112 (421)
T 2ctz_A           63 LEKRLAALEGGKA-----------ALATASGHAAQFLALTTLA----Q---------------AGDNIVSTPNLYGGTFN  112 (421)
T ss_dssp             HHHHHHHHHTCSE-----------EEEESSHHHHHHHHHHHHC----C---------------TTCEEEECSCCCHHHHH
T ss_pred             HHHHHHHHhCCCc-----------eEEecCHHHHHHHHHHHHh----C---------------CCCEEEEeCCCchHHHH
Confidence            4456777888753           5677778999999988751    1               12257789999999888


Q ss_pred             HH----HhcCCceEEe-eCCCCCCcCHHHHHHHHHH
Q psy1678         256 AG----LLGGVTIRGL-PADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       256 aa----~~lg~~v~~V-p~d~~~~md~~~L~~~i~~  286 (297)
                      ++    ...|++++.+ +++     |+++|+++|++
T Consensus       113 ~~~~~~~~~g~~~~~~~~~~-----d~~~l~~~i~~  143 (421)
T 2ctz_A          113 QFKVTLKRLGIEVRFTSREE-----RPEEFLALTDE  143 (421)
T ss_dssp             HHHTHHHHTTCEEEECCTTC-----CHHHHHHHCCT
T ss_pred             HHHHHHHHcCCEEEEECCCC-----CHHHHHHhhcc
Confidence            76    6789999888 765     78998888754

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=96.36  E-value=0.025  Score=51.66  Aligned_cols=41  Identities=17%  Similarity=0.062  Sum_probs=32.6

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      .....++.+|+++++|. +          ..+||+|||+||..|+.+++...
T Consensus        77 ~~~~~~l~~~la~~~~~-~----------~v~~~~gg~ea~~~al~~~~~~~  117 (395)
T 3nx3_A           77 NENIAAAAKNLAKASAL-E----------RVFFTNSGTESIEGAMKTARKYA  117 (395)
T ss_dssp             CHHHHHHHHHHHHHHTC-S----------EEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCC-C----------eEEEeCCHHHHHHHHHHHHHHHh
Confidence            34555677889999883 2          48999999999999999998753

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=96.36  E-value=0.035  Score=51.94  Aligned_cols=97  Identities=13%  Similarity=-0.052  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .....++.+|++++++...+         ..+||+|||+||..|++++|......    |.      ..++-+|+....-
T Consensus        86 ~~~~~~la~~l~~~~~~~~~---------~v~~~~sGseA~~~al~~~~~~~~~~----G~------~~~~~vi~~~~~y  146 (448)
T 3dod_A           86 NVPATQLAETLIDISPKKLT---------RVFYSDSGAEAMEIALKMAFQYWKNI----GK------PEKQKFIAMKNGY  146 (448)
T ss_dssp             EHHHHHHHHHHHHHSCTTEE---------EEEEESSHHHHHHHHHHHHHHHHHHT----TC------TTCCEEEEEC---
T ss_pred             CHHHHHHHHHHHHhCCCCCC---------EEEEeCchHHHHHHHHHHHHHHHHhh----CC------CCCCEEEEECCCC
Confidence            44556678899999865433         48999999999999999999753211    10      0123344444444


Q ss_pred             cchHHHHHHhcC------------CceEEeeCCCCCCc-----------CHHHHHHHHH
Q psy1678         250 HSSVERAGLLGG------------VTIRGLPADDSYKL-----------RGDALEAAIE  285 (297)
Q Consensus       250 H~Si~Kaa~~lg------------~~v~~Vp~d~~~~m-----------d~~~L~~~i~  285 (297)
                      |-+..-+..+.|            ..+..+|.+..++.           |+++|+++|+
T Consensus       147 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~  205 (448)
T 3dod_A          147 HGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLE  205 (448)
T ss_dssp             --------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHH
Confidence            544433333322            24667777766665           4899999997

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=96.34  E-value=0.045  Score=50.61  Aligned_cols=91  Identities=18%  Similarity=0.037  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH  250 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH  250 (297)
                      ....++.+.+++++|.+.+         .-+||+|||++|..|+.++|...       +         ++-+|+....-|
T Consensus        85 ~~~~~l~~~la~~~~~~~~---------~v~~~~gg~ea~~~a~~~~~~~~-------~---------~~~vi~~~~~yh  139 (433)
T 1zod_A           85 RPVVDLATRLANITPPGLD---------RALLLSTGAESNEAAIRMAKLVT-------G---------KYEIVGFAQSWH  139 (433)
T ss_dssp             HHHHHHHHHHHHHSCTTCC---------EEEEESCHHHHHHHHHHHHHHHH-------T---------CCEEEEETTCCC
T ss_pred             HHHHHHHHHHHHhCCCCcC---------EEEEeCchHHHHHHHHHHHHHhh-------C---------CCeEEEECCCcC
Confidence            3445566788888886532         48999999999999999887531       1         123454555667


Q ss_pred             chHHHHHHhcC-----------CceEEeeCCCCC------------CcCHHHHHHHHHH
Q psy1678         251 SSVERAGLLGG-----------VTIRGLPADDSY------------KLRGDALEAAIEE  286 (297)
Q Consensus       251 ~Si~Kaa~~lg-----------~~v~~Vp~d~~~------------~md~~~L~~~i~~  286 (297)
                      .+..-+..+.+           .+++.|+++...            .+|+++|+++|++
T Consensus       140 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~  198 (433)
T 1zod_A          140 GMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDR  198 (433)
T ss_dssp             CSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHH
T ss_pred             CCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHh
Confidence            66655554421           256777664322            3579999999975

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=96.32  E-value=0.029  Score=52.36  Aligned_cols=91  Identities=13%  Similarity=0.058  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH  250 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH  250 (297)
                      ....++.+.+++++|.+           ..+||+|||+||..|+.++|.+...+.   |  .. +  .++-+|+....-|
T Consensus       107 ~~~~~l~~~la~~~g~~-----------~v~~~~sGseA~~~al~~a~~~~~~~~---g--~~-~--gr~~vi~~~~~yh  167 (433)
T 1z7d_A          107 VPLGICERYLTNLLGYD-----------KVLMMNTGAEANETAYKLCRKWGYEVK---K--IP-E--NMAKIVVCKNNFS  167 (433)
T ss_dssp             HHHHHHHHHHHHHHTCS-----------EEEEESSHHHHHHHHHHHHHHHHHHTS---C--CC-T--TCCEEEEETTC--
T ss_pred             HHHHHHHHHHHhhcCCC-----------eEEEeCCHHHHHHHHHHHHHHHhhhcc---C--CC-C--CCCeEEEEeCCcC
Confidence            34445556777777743           388999999999999999986432110   0  00 0  0133444444566


Q ss_pred             chHHHHHHhcC------------CceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         251 SSVERAGLLGG------------VTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       251 ~Si~Kaa~~lg------------~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      .+...++.+.|            .+++.+|.+     |+++|+++|+
T Consensus       168 g~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~  209 (433)
T 1z7d_A          168 GRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELK  209 (433)
T ss_dssp             ------------------------CEEEECTT-----CHHHHHHHHT
T ss_pred             CcchhhhcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhC
Confidence            66665555544            245566653     7888888874

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=96.31  E-value=0.011  Score=54.50  Aligned_cols=78  Identities=10%  Similarity=-0.038  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchH
Q psy1678         174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSV  253 (297)
Q Consensus       174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si  253 (297)
                      .++.+++++++|.+.           .+++++||++|..++.+..    .               +.-.|+++...|.+.
T Consensus        62 ~~l~~~la~~~g~~~-----------~i~~~sG~~ai~~~~~~~~----~---------------~gd~vl~~~~~y~~~  111 (389)
T 3acz_A           62 EQFEEMVCSIEGAAG-----------SAAFGSGMGAISSSTLAFL----Q---------------KGDHLIAGDTLYGCT  111 (389)
T ss_dssp             HHHHHHHHHHHTCSE-----------EEEESSHHHHHHHHHTTTC----C---------------TTCEEEEESSCCHHH
T ss_pred             HHHHHHHHHHhCCCe-----------EEEeCCHHHHHHHHHHHHh----C---------------CCCEEEEeCCCchHH
Confidence            345567888888762           6788889999988887641    0               112567788999987


Q ss_pred             HHH----HHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         254 ERA----GLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       254 ~Ka----a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ..+    +...|++++.||.+     |+++|+++|++
T Consensus       112 ~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~  143 (389)
T 3acz_A          112 VSLFTHWLPRFGIEVDLIDTS-----DVEKVKAAWKP  143 (389)
T ss_dssp             HHHHHHHHHHTTCEEEEECTT-----CHHHHHHTCCT
T ss_pred             HHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCC
Confidence            776    57789998888873     78888777753

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=96.25  E-value=0.02  Score=53.16  Aligned_cols=89  Identities=18%  Similarity=0.074  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc
Q psy1678         172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS  251 (297)
Q Consensus       172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~  251 (297)
                      ...++.+.++++++-++          ..+||+|||++|..|++++|...       +         ++.+|+....-|.
T Consensus        94 ~~~~l~~~la~~~~~~~----------~v~~~~~Gsea~~~ai~~a~~~~-------~---------~~~vi~~~~~yhg  147 (429)
T 3k28_A           94 IENKLAKLVIERVPSIE----------IVRMVNSGTEATMSALRLARGYT-------G---------RNKILKFIGCYHG  147 (429)
T ss_dssp             HHHHHHHHHHHHSTTCS----------EEEEESSHHHHHHHHHHHHHHHH-------T---------CCEEEEEETCCCC
T ss_pred             HHHHHHHHHHHhCCCCC----------EEEEeCChHHHHHHHHHHHHHhh-------C---------CCEEEEECCCcCC
Confidence            34455667788875222          48999999999999999998641       1         2234545555565


Q ss_pred             hHHHHHHhcCCceEEeeCCCCCCc--------------CHHHHHHHHHH
Q psy1678         252 SVERAGLLGGVTIRGLPADDSYKL--------------RGDALEAAIEE  286 (297)
Q Consensus       252 Si~Kaa~~lg~~v~~Vp~d~~~~m--------------d~~~L~~~i~~  286 (297)
                      +...+....|..+..++......+              |+++|++.|++
T Consensus       148 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~  196 (429)
T 3k28_A          148 HGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQ  196 (429)
T ss_dssp             SCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHH
T ss_pred             CcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHh
Confidence            444444333332222222111111              89999999875

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=96.09  E-value=0.023  Score=53.19  Aligned_cols=87  Identities=14%  Similarity=0.024  Sum_probs=56.5

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+++++++|.+           ..+||+|||+||..|+.++|.+...+.   |  .. +  .++-+|+....-|.+..
T Consensus       122 ~l~~~la~~~g~~-----------~v~~~~sGseA~~~al~~~~~~~~~~~---g--~~-~--g~~~vi~~~~~yhg~~~  182 (439)
T 2oat_A          122 EYEEYITKLFNYH-----------KVLPMNTGVEAGETACKLARKWGYTVK---G--IQ-K--YKAKIVFAAGNFWGRTL  182 (439)
T ss_dssp             HHHHHHHHHHTCS-----------EEEEESSHHHHHHHHHHHHHHHHHHTT---C--CC-T--TCCEEEEETTCCCCSSH
T ss_pred             HHHHHHHHhcCCC-----------EEEEeCCHHHHHHHHHHHHHHHhhhcc---C--CC-C--CCCeEEEEcCCCCCCCH
Confidence            4455666767743           388999999999999999986532110   1  00 0  11335555556777777


Q ss_pred             HHHHhcC------------CceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         255 RAGLLGG------------VTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       255 Kaa~~lg------------~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      .++.+.|            .+++.+|.+     |+++|+++|+
T Consensus       183 ~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~  220 (439)
T 2oat_A          183 SAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQ  220 (439)
T ss_dssp             HHHTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHTT
T ss_pred             hHhhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHhC
Confidence            7776655            366777754     7888888885

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=96.02  E-value=0.072  Score=49.97  Aligned_cols=98  Identities=14%  Similarity=-0.044  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .....++.++++++++.+.+         .-+||+|||+||..|++++|.....+    |.      ..+..+|.....-
T Consensus        94 ~~~~~~la~~l~~~~~~~~~---------~v~~~~gGseA~~~al~~~~~~~~~~----g~------~~~~~vi~~~~~y  154 (460)
T 3gju_A           94 TEASITLAKMIIDRAPKGMS---------RVYFGLSGSDANETNIKLIWYYNNVL----GR------PEKKKIISRWRGY  154 (460)
T ss_dssp             CHHHHHHHHHHHHHSCTTEE---------EEEEESSHHHHHHHHHHHHHHHHHHT----TC------TTCCEEEEETTCC
T ss_pred             CHHHHHHHHHHHhhCCCCcC---------EEEEeCchHHHHHHHHHHHHHHHHhc----CC------CCCCEEEEECCCc
Confidence            34555677888888765543         48999999999999999999764221    10      0123455555666


Q ss_pred             cchHHHHHHhcCC------------ceEEeeCCC-----CCCcC--------HHHHHHHHHH
Q psy1678         250 HSSVERAGLLGGV------------TIRGLPADD-----SYKLR--------GDALEAAIEE  286 (297)
Q Consensus       250 H~Si~Kaa~~lg~------------~v~~Vp~d~-----~~~md--------~~~L~~~i~~  286 (297)
                      |-+..-+..+.|.            .++.+|+..     +..++        +++|+++|++
T Consensus       155 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~  216 (460)
T 3gju_A          155 HGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILA  216 (460)
T ss_dssp             CCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHh
Confidence            6655555544332            567777532     22344        5888888874

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=96.02  E-value=0.0037  Score=58.72  Aligned_cols=92  Identities=13%  Similarity=-0.013  Sum_probs=60.7

Q ss_pred             chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      +....+|....+++++++|.+.          .-+++++||++|..++.+.++.                  .+ .|+++
T Consensus        87 ~~~~~~e~~a~~~la~~~g~~~----------~~v~~~sGs~a~~~a~~~~~~~------------------Gd-~Vl~~  137 (447)
T 3h7f_A           87 EHVDVVENLARDRAKALFGAEF----------ANVQPHSGAQANAAVLHALMSP------------------GE-RLLGL  137 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSE----------EECCCSSHHHHHHHHHHHHCCT------------------TC-EEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCCc----------eEEEeCCHHHHHHHHHHHhcCC------------------CC-EEEec
Confidence            3444667666699999999875          2444788999999888775321                  12 45666


Q ss_pred             CCCcch-HHHH--HHhc--CCceEEeeCC-CCCCcCHHHHHHHHHHH
Q psy1678         247 DQAHSS-VERA--GLLG--GVTIRGLPAD-DSYKLRGDALEAAIEED  287 (297)
Q Consensus       247 ~~aH~S-i~Ka--a~~l--g~~v~~Vp~d-~~~~md~~~L~~~i~~~  287 (297)
                      ..+|.+ +..+  ..+.  ++.++.+|++ +++.+|+++|++++++.
T Consensus       138 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~  184 (447)
T 3h7f_A          138 DLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEF  184 (447)
T ss_dssp             CGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHH
T ss_pred             CcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhc
Confidence            666655 2111  1122  3456667777 57899999999999753

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=96.01  E-value=0.015  Score=54.73  Aligned_cols=78  Identities=10%  Similarity=0.074  Sum_probs=55.8

Q ss_pred             HHHHHHcCCCccccccCCCCCCeEE---cCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC-CCcchH
Q psy1678         178 DWLGKMLDLPKEFLACSGGKGGGVI---QGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD-QAHSSV  253 (297)
Q Consensus       178 ~~l~~llg~~~~~~~~~~~~~~G~~---tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-~aH~Si  253 (297)
                      +.+++++|.+.           .++   +++||+||..++.+.    +.               +.-.|++++ ..|...
T Consensus        81 ~~lA~l~g~e~-----------alv~p~~~sGt~A~~~al~al----l~---------------pGD~Vl~~~~~~y~~~  130 (427)
T 3hvy_A           81 RVYANIFNTES-----------AFVRPHFVNGTHAIGAALFGN----LR---------------PNDTMMSICGMPYDTL  130 (427)
T ss_dssp             HHHHHHHTCSE-----------EEEETTCCSHHHHHHHHHHHT----CC---------------TTCEEEECSSSCCGGG
T ss_pred             HHHHHHhCCCc-----------eEEeCCCCcHHHHHHHHHHHh----cC---------------CCCEEEEeCCCCchhH
Confidence            46788888864           466   899999998877653    11               112455565 566544


Q ss_pred             H-----------HHHHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         254 E-----------RAGLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       254 ~-----------Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      .           +.+...|+.++.||. ++|.+|+++|+++|++
T Consensus       131 ~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~  173 (427)
T 3hvy_A          131 HDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKK  173 (427)
T ss_dssp             HHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHH
T ss_pred             HHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhC
Confidence            4           445557889999999 7899999999999974

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=95.99  E-value=0.037  Score=51.99  Aligned_cols=97  Identities=13%  Similarity=-0.024  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .....++.+|++++++.+.+         .-+||+|||+||..|++++|+....+    |.      ..++.+|.....-
T Consensus        93 ~~~~~~la~~l~~~~~~~~~---------~v~~~~ggseA~~~al~~~~~~~~~~----g~------~~~~~vi~~~~~y  153 (459)
T 4a6r_A           93 HPAVVELSSLLAEVTPAGFD---------RVFYTNSGSESVDTMIRMVRRYWDVQ----GK------PEKKTLIGRWNGY  153 (459)
T ss_dssp             CHHHHHHHHHHHHHSCTTCC---------EEEEESSHHHHHHHHHHHHHHHHHHT----TC------TTCCEEEEETTCC
T ss_pred             CHHHHHHHHHHHHhCCCCCC---------EEEEeCchHHHHHHHHHHHHHHHHhc----CC------CCCCEEEEECCCc
Confidence            44556678899999876542         48999999999999999999864321    10      0123345555555


Q ss_pred             cchHHHHHHhcC------------CceEEeeCCC-----CCCcC--------HHHHHHHHHH
Q psy1678         250 HSSVERAGLLGG------------VTIRGLPADD-----SYKLR--------GDALEAAIEE  286 (297)
Q Consensus       250 H~Si~Kaa~~lg------------~~v~~Vp~d~-----~~~md--------~~~L~~~i~~  286 (297)
                      |-+..-+..+.|            .++..+|+..     ++ +|        +++|++.|++
T Consensus       154 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~  214 (459)
T 4a6r_A          154 HGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILE  214 (459)
T ss_dssp             CCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHH
Confidence            644444444322            1456666432     23 66        7888888864

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=95.97  E-value=0.054  Score=51.08  Aligned_cols=77  Identities=16%  Similarity=0.057  Sum_probs=55.6

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+++++++|.+.           .+++++|+++|..++.+..    .               +.-.|+++...|.+..
T Consensus       118 ~l~~~lA~l~g~~~-----------~v~~~sG~~Ai~~al~~l~----~---------------~Gd~Vi~~~~~y~~~~  167 (445)
T 1qgn_A          118 VLEEKISALEGAES-----------TLLMASGMCASTVMLLALV----P---------------AGGHIVTTTDCYRKTR  167 (445)
T ss_dssp             HHHHHHHHHHTCSE-----------EEEESCHHHHHHHHHHHHS----C---------------SSCEEEEETTSCHHHH
T ss_pred             HHHHHHHHHhCCCc-----------EEEeCCHHHHHHHHHHHHh----C---------------CCCEEEEcCCCchhHH
Confidence            34457788888753           5666777799999887531    0               1124667888898877


Q ss_pred             HH----HHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         255 RA----GLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       255 Ka----a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ..    +..+|+.++.||.+     |+++|+++|++
T Consensus       168 ~~~~~~~~~~G~~v~~v~~~-----d~~~l~~ai~~  198 (445)
T 1qgn_A          168 IFIETILPKMGITATVIDPA-----DVGALELALNQ  198 (445)
T ss_dssp             HHHHHTGGGGTCEEEEECSS-----CHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCEEEEeCCC-----CHHHHHHHhcc
Confidence            64    45678999999876     89999999975

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=95.96  E-value=0.044  Score=50.73  Aligned_cols=40  Identities=20%  Similarity=0.175  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      ....++.+++++.++-++          ..+||+|||++|..|++++|..
T Consensus        95 ~~~~~l~~~la~~~~~~~----------~v~~~~sGsea~~~ai~~a~~~  134 (434)
T 3l44_A           95 ALEVKFAKMLKEAMPALD----------KVRFVNSGTEAVMTTIRVARAY  134 (434)
T ss_dssp             HHHHHHHHHHHHHCTTCS----------EEEEESSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCC----------EEEEeCchHHHHHHHHHHHHHh
Confidence            344456678888886222          4899999999999999999864

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=95.92  E-value=0.0085  Score=54.15  Aligned_cols=71  Identities=13%  Similarity=0.115  Sum_probs=52.8

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +.+.+++++|.+.+         .-+||+|||+++..++.+.      +    +          + .|++...+|.++..
T Consensus        64 l~~~la~~~~~~~~---------~v~~~~g~~~al~~~~~~~------~----g----------d-~vl~~~p~y~~~~~  113 (364)
T 1lc5_A           64 LHQALARHHQVPAS---------WILAGNGETESIFTVASGL------K----P----------R-RAMIVTPGFAEYGR  113 (364)
T ss_dssp             HHHHHHHHHTSCGG---------GEEEESSHHHHHHHHHHHH------C----C----------S-EEEEEESCCTHHHH
T ss_pred             HHHHHHHHHCcCHH---------HEEECCCHHHHHHHHHHHc------C----C----------C-eEEEeCCCcHHHHH
Confidence            44456666687653         5899999999999888775      1    1          1 35567789999999


Q ss_pred             HHHhcCCceEEeeCCCCCCcC
Q psy1678         256 AGLLGGVTIRGLPADDSYKLR  276 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~~~~md  276 (297)
                      ++...|.+++.||.+....++
T Consensus       114 ~~~~~g~~~~~v~~~~~~~~~  134 (364)
T 1lc5_A          114 ALAQSGCEIRRWSLREADGWQ  134 (364)
T ss_dssp             HHHHTTCEEEEEECCGGGTTC
T ss_pred             HHHHcCCeEEEEeCCcccccc
Confidence            999999999999998532344

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=95.86  E-value=0.022  Score=51.94  Aligned_cols=37  Identities=16%  Similarity=0.022  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         173 EVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       173 E~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      ..++.+|+++++| ++          ..+||+|||+||..|+.+++..
T Consensus        80 ~~~l~~~la~~~g-~~----------~v~~~~~gt~a~~~al~~~~~~  116 (392)
T 3ruy_A           80 LGPWYEKVAKLTN-KE----------MVLPMNTGAEAVETAIKTARRW  116 (392)
T ss_dssp             HHHHHHHHHHHHT-CS----------EEEEESSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CC----------EEEEeCcHHHHHHHHHHHHHHh
Confidence            3456678899998 33          4899999999999999988764

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=95.77  E-value=0.028  Score=51.96  Aligned_cols=42  Identities=17%  Similarity=0.088  Sum_probs=33.6

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      ......++.+|+++.++-++          ..+||+|||++|..|+++||..
T Consensus        90 ~~~~~~~la~~l~~~~~~~~----------~v~~~~ggsea~~~al~~a~~~  131 (427)
T 3fq8_A           90 PCALENVLAEMVNDAVPSIE----------MVRFVNSGTEACMAVLRIMRAY  131 (427)
T ss_dssp             CCHHHHHHHHHHHHHSTTCS----------EEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCC----------EEEEeCCHHHHHHHHHHHHHHh
Confidence            34566678889999987322          4899999999999999998764

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=95.74  E-value=0.045  Score=49.87  Aligned_cols=76  Identities=14%  Similarity=0.024  Sum_probs=53.5

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +.+.+++++|.++           .+++++||++|..++.+...                   +.-.|+++..+|.++..
T Consensus        57 l~~~la~~~~~~~-----------~i~~~sGt~a~~~~~~~~~~-------------------~g~~vl~~~~~~~~~~~  106 (386)
T 1cs1_A           57 VQRALAELEGGAG-----------AVLTNTGMSAIHLVTTVFLK-------------------PGDLLVAPHDCYGGSYR  106 (386)
T ss_dssp             HHHHHHHHHTCSE-----------EEEESSHHHHHHHHHHHHCC-------------------TTCEEEEETTCCHHHHH
T ss_pred             HHHHHHHHhCCCc-----------EEEeCCHHHHHHHHHHHHhC-------------------CCCEEEEecCCcHhHHH
Confidence            4456677777763           45556669999998887511                   11246778889988555


Q ss_pred             H----HHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         256 A----GLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       256 a----a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +    +...|++++.+|.+     |+++|+++|++
T Consensus       107 ~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~  136 (386)
T 1cs1_A          107 LFDSLAKRGCYRVLFVDQG-----DEQALRAALAE  136 (386)
T ss_dssp             HHHHHHTTTSCEEEEECTT-----CHHHHHHHHHT
T ss_pred             HHHHHHHhcCCEEEEeCCC-----CHHHHHHhhcc
Confidence            4    46678899988875     89999998864

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=95.57  E-value=0.065  Score=48.26  Aligned_cols=36  Identities=14%  Similarity=-0.025  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHH
Q psy1678         174 VVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKA  219 (297)
Q Consensus       174 ~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~  219 (297)
                      .++.+++++++|.|+          ..++|+|||+++..++.++|.
T Consensus        73 ~~l~~~la~~~g~~~----------~v~~~~g~t~a~~~~~~~~~~  108 (375)
T 2eh6_A           73 EELAHKLVKHFWTEG----------KVFFANSGTESVEAAIKLARK  108 (375)
T ss_dssp             HHHHHHHHHTSSSCE----------EEEEESSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCC----------eEEEeCchHHHHHHHHHHHHH
Confidence            345678899999853          489999999999999988764

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=95.52  E-value=0.21  Score=46.47  Aligned_cols=97  Identities=13%  Similarity=0.017  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ......++.+|++++++.+.         . -+||+|||+||..|++++|.....    .|.      ..++-+|+....
T Consensus        89 ~~~~~~~la~~l~~~~~~~~---------~-v~~~~ggseA~~~al~~~~~~~~~----~g~------~~~~~vi~~~~~  148 (452)
T 3n5m_A           89 SHEPAIKLAEKLNEWLGGEY---------V-IFFSNSGSEANETAFKIARQYYAQ----KGE------PHRYKFMSRYRG  148 (452)
T ss_dssp             EEHHHHHHHHHHHHHHTSCE---------E-EEEESSHHHHHHHHHHHHHHHHHT----TTC------TTCCEEEEETTC
T ss_pred             CCHHHHHHHHHHHHhCCCCc---------e-EEEeCchHHHHHHHHHHHHHHHHh----cCC------CCCCEEEEECCC
Confidence            44566678889999988754         2 889999999999999999865321    110      012345555556


Q ss_pred             CcchHHHHHHhcCC------------ceEEeeCCCCCCc------------CHHHHHHHHH
Q psy1678         249 AHSSVERAGLLGGV------------TIRGLPADDSYKL------------RGDALEAAIE  285 (297)
Q Consensus       249 aH~Si~Kaa~~lg~------------~v~~Vp~d~~~~m------------d~~~L~~~i~  285 (297)
                      -|-+..-+..+.|.            .+..+|.....+.            ++++|+++|+
T Consensus       149 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~  209 (452)
T 3n5m_A          149 YHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMT  209 (452)
T ss_dssp             CCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHH
T ss_pred             cCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHH
Confidence            66555545544332            3556665322222            2899999987

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=95.51  E-value=0.2  Score=47.27  Aligned_cols=97  Identities=15%  Similarity=0.130  Sum_probs=60.4

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .....++.+.++++++.+.+         .-+||+||||||..|++++|.....+    |.      ..++.+|.....-
T Consensus        98 ~~~~~~lae~l~~~~~~~~~---------~v~~~~sGseA~~~aik~a~~~~~~~----g~------~~~~~ii~~~~~y  158 (472)
T 3hmu_A           98 HVPAIALAQKLAELAPGDLN---------HVFFAGGGSEANDTNIRMVRTYWQNK----GQ------PEKTVIISRKNAY  158 (472)
T ss_dssp             CHHHHHHHHHHHHHSCTTEE---------EEEEESSHHHHHHHHHHHHHHHHHHT----TC------TTCCEEEEETTCC
T ss_pred             CHHHHHHHHHHHHhCCCCCC---------EEEEeCCHHHHHHHHHHHHHHHHHhc----CC------CCCCEEEEEcCcC
Confidence            34455567788888865433         48999999999999999999864321    10      0123345455556


Q ss_pred             cchHHHHHHhcCC-----------ceEEeeCCC-----CCCcC--------HHHHHHHHHH
Q psy1678         250 HSSVERAGLLGGV-----------TIRGLPADD-----SYKLR--------GDALEAAIEE  286 (297)
Q Consensus       250 H~Si~Kaa~~lg~-----------~v~~Vp~d~-----~~~md--------~~~L~~~i~~  286 (297)
                      |-+..-+..+.|.           .+..||...     ++ +|        +++|++.|++
T Consensus       159 Hg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~  218 (472)
T 3hmu_A          159 HGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILE  218 (472)
T ss_dssp             CCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHh
Confidence            6555444444332           466677532     22 45        7888888864

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=95.44  E-value=0.07  Score=49.41  Aligned_cols=42  Identities=19%  Similarity=0.075  Sum_probs=31.9

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      ......++.++++++++-++          ..+||+|||+||..|+.+||..
T Consensus        94 ~~~~~~~l~~~la~~~~~~~----------~v~~~~sgseA~~~al~~ar~~  135 (434)
T 2epj_A           94 PGEAEVLLAEKILGYVKRGG----------MIRFVNSGTEATMTAIRLARGY  135 (434)
T ss_dssp             CCHHHHHHHHHHHHHHCTTC----------EEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCC----------EEEEeCCHHHHHHHHHHHHHHh
Confidence            34555667788888884122          4889999999999999999753

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=95.39  E-value=0.092  Score=49.18  Aligned_cols=43  Identities=19%  Similarity=0.135  Sum_probs=33.2

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      .....++.++++++++.+..        ..-+||+||||||..|+++||..
T Consensus       103 ~~~~~~la~~l~~~~~~~~~--------~~v~~~~sGseA~~~Alk~a~~~  145 (451)
T 3oks_A          103 YEGYVAVCEQLNRLTPVRGD--------KRSALFNSGSEAVENAVKIARSH  145 (451)
T ss_dssp             CHHHHHHHHHHHHHSSCCSS--------EEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCcCCC--------CEEEEeCcHHHHHHHHHHHHHHh
Confidence            44555778899999864311        14899999999999999999875

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=95.34  E-value=0.089  Score=49.07  Aligned_cols=42  Identities=29%  Similarity=0.260  Sum_probs=35.1

Q ss_pred             hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHH
Q psy1678         168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKA  219 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~  219 (297)
                      ....++.++.+|++++++ ..+         .-+||+|||+||..|+.+||.
T Consensus        94 ~~~~~~~~la~~l~~~~~-~~~---------~v~~~~gg~eA~~~al~~ar~  135 (453)
T 2cy8_A           94 ASHPLEVRWAERIVAAFP-SIR---------KLRFTGSGTETTLLALRVARA  135 (453)
T ss_dssp             SSCHHHHHHHHHHHHHCT-TCS---------EEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhhCC-CCC---------EEEEeCCHHHHHHHHHHHHHH
Confidence            356788999999999986 222         488999999999999999985

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=95.29  E-value=0.21  Score=46.35  Aligned_cols=102  Identities=10%  Similarity=-0.056  Sum_probs=71.9

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|....+..++-+.+.+|+.+.-+.+-..     .....++|+||++|...++.+..+.                 .+ -
T Consensus        67 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~~-----~~i~i~~t~G~~~al~~~~~~l~~~-----------------~~-d  123 (405)
T 3k7y_A           67 PYLLGNGTEDFSTLTQNLIFGNNSKYIED-----KKICTIQCIGGTGAIFVLLEFLKML-----------------NV-E  123 (405)
T ss_dssp             CCCTTSSCHHHHHHHHHHHHCSSCTTTTT-----TCEEEEEEEHHHHHHHHHHHHHHTT-----------------TC-C
T ss_pred             CCCCCCCcHHHHHHHHHHHcCCCCccccc-----cceEEEEcCchHHHHHHHHHHHHhc-----------------CC-C
Confidence            45555566677777888886554433110     0013589999999988877654221                 12 3


Q ss_pred             EEEecCCCcchHHHHHHhcCCceEEeeC-CC-CCCcCHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERAGLLGGVTIRGLPA-DD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~-d~-~~~md~~~L~~~i~~  286 (297)
                      .|++++-+-+....+++..|.+++.||+ ++ ++.+|+++|+++|++
T Consensus       124 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  170 (405)
T 3k7y_A          124 TLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRN  170 (405)
T ss_dssp             EEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHH
T ss_pred             EEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHh
Confidence            5677778888888999999999999998 44 589999999999975

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=95.29  E-value=0.039  Score=50.42  Aligned_cols=78  Identities=14%  Similarity=0.001  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC-
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ-  248 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~-  248 (297)
                      ..+|..+-+++++++|.++.        ...++|+|||+++..++.+.     +     |          + .|+++.. 
T Consensus        57 ~~~~~~~~~~~a~~~g~~~~--------~~~~~~~ggt~a~~~~~~~~-----~-----g----------d-~Vl~~~~~  107 (374)
T 2aeu_A           57 SYFAEKVNEYGLKHLGGDEN--------DKCVGFNRTSSAILATILAL-----K-----P----------K-KVIHYLPE  107 (374)
T ss_dssp             HHHHHHHHHHHHHHHTCCTT--------EEEEEESSHHHHHHHHHHHH-----C-----C----------S-EEEEECSS
T ss_pred             hHHHHHHHHHHHHHhCCCCc--------ceEEEEcChHHHHHHHHHhC-----C-----C----------C-EEEEecCC
Confidence            34667788888899998411        13799999999999988864     1     1          1 3445555 


Q ss_pred             --CcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678         249 --AHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAA  283 (297)
Q Consensus       249 --aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~  283 (297)
                        +|+++.+++...|.+++.|       +|+++|+++
T Consensus       108 y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~  137 (374)
T 2aeu_A          108 LPGHPSIERSCKIVNAKYFES-------DKVGEILNK  137 (374)
T ss_dssp             SSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT
T ss_pred             CCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc
Confidence              5788777888888877766       367766654

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=95.28  E-value=0.056  Score=49.93  Aligned_cols=67  Identities=10%  Similarity=0.048  Sum_probs=46.6

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      .+...++++.+.+|+.+-++.+++         .-+||+|+++++.. +.+    .+.               +.-.|++
T Consensus        97 ~~g~~~l~~~ia~~~~~~~~~~~~---------~i~~t~G~~~al~~-l~~----l~~---------------~gd~Vl~  147 (432)
T 3ei9_A           97 EQGAKPLRAAIAKTFYGGLGIGDD---------DVFVSDGAKCDISR-LQV----MFG---------------SNVTIAV  147 (432)
T ss_dssp             TTCCHHHHHHHHHHHHTTTTCCGG---------GEEEESCHHHHHHH-HHH----HHC---------------TTCCEEE
T ss_pred             CCCCHHHHHHHHHHHHccCCCCcc---------eEEECCChHHHHHH-HHH----HcC---------------CCCEEEE
Confidence            345578899899998875555543         58999999998764 221    111               1124667


Q ss_pred             cCCCcchHHHHHHhcC
Q psy1678         246 SDQAHSSVERAGLLGG  261 (297)
Q Consensus       246 s~~aH~Si~Kaa~~lg  261 (297)
                      ++-.|.++..++...|
T Consensus       148 ~~p~y~~~~~~~~~~g  163 (432)
T 3ei9_A          148 QDPSYPAYVDSSVIMG  163 (432)
T ss_dssp             EESCCTHHHHHHHHHT
T ss_pred             eCCCCHHHHHHHHHcC
Confidence            8899999999888777

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=95.25  E-value=0.036  Score=51.77  Aligned_cols=82  Identities=11%  Similarity=0.003  Sum_probs=54.0

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|...++|+    .+++++|.+.           .++++|||+||..++.+.    +.               +.-.|+
T Consensus        80 ~~p~~~~le~----~lA~l~g~~~-----------~i~~ssGt~Ai~~al~~l----~~---------------~Gd~Vi  125 (415)
T 2fq6_A           80 GTLTHFSLQQ----AMCELEGGAG-----------CVLFPCGAAAVANSILAF----IE---------------QGDHVL  125 (415)
T ss_dssp             CCHHHHHHHH----HHHHHHTCSE-----------EEEESSHHHHHHHHHHTT----CC---------------TTCEEE
T ss_pred             CCchHHHHHH----HHHHHhCCCe-----------EEEeCCHHHHHHHHHHHH----hC---------------CCCEEE
Confidence            4566566665    5677888752           678899999998887752    11               112567


Q ss_pred             ecCCCcchHHHHH----HhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         245 CSDQAHSSVERAG----LLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       245 ~s~~aH~Si~Kaa----~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      ++...|.+....+    ...|+.++.|+.+     |+++|+++|+
T Consensus       126 ~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~-----d~~~le~ai~  165 (415)
T 2fq6_A          126 MTNTAYEPSQDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQ  165 (415)
T ss_dssp             EETTSCHHHHHHHHHTGGGGTCEEEEECTT-----CGGGGGGGCC
T ss_pred             EeCCCchHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhhc
Confidence            7888998887655    3457777777654     5555555554

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=95.13  E-value=0.14  Score=47.36  Aligned_cols=40  Identities=23%  Similarity=0.214  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      ....++.++++++++.++          ..+||+|||+||..|+++||..
T Consensus        93 ~~~~~la~~l~~~~~~~~----------~v~~~~sGsea~~~al~~a~~~  132 (429)
T 4e77_A           93 EMEVKMAQLVTDLVPTMD----------MVRMVNSGTEATMSAIRLARGY  132 (429)
T ss_dssp             HHHHHHHHHHHHHSTTCS----------EEEEESSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCC----------EEEEeCcHHHHHHHHHHHHHHh
Confidence            455566778888886332          4899999999999999998764

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=95.12  E-value=0.037  Score=52.45  Aligned_cols=78  Identities=14%  Similarity=0.092  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcc
Q psy1678         172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHS  251 (297)
Q Consensus       172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~  251 (297)
                      .-.++.+|+++++|.++           .++++|||+++..++.     .+.               +.-.|+++...|.
T Consensus       134 ~~~~l~~~la~~~g~~~-----------~i~~~sGt~al~~~l~-----~~~---------------~Gd~Vi~~~~~y~  182 (464)
T 1ibj_A          134 TRDALESLLAKLDKADR-----------AFCFTSGMAALSAVTH-----LIK---------------NGEEIVAGDDVYG  182 (464)
T ss_dssp             HHHHHHHHHHHHHTCSE-----------EEEESSHHHHHHHHHT-----TSC---------------TTCEEEEESSCCH
T ss_pred             HHHHHHHHHHHHhCCCe-----------EEEECCHHHHHHHHHH-----HhC---------------CCCEEEEECCCch
Confidence            44567889999999752           7888999988765442     111               1124667888998


Q ss_pred             hHHHH----HHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         252 SVERA----GLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       252 Si~Ka----a~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      +...+    +...|..++.||++     |+++|+++|+
T Consensus       183 ~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~i~  215 (464)
T 1ibj_A          183 GSDRLLSQVVPRSGVVVKRVNTT-----KLDEVAAAIG  215 (464)
T ss_dssp             HHHHHHHHTSGGGTCEEEEECTT-----SHHHHHHHCC
T ss_pred             hHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHHhc
Confidence            88764    45678899999875     8888888875

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=95.10  E-value=0.36  Score=45.13  Aligned_cols=44  Identities=16%  Similarity=0.052  Sum_probs=33.8

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      ......++.++++++++.+..        ..-+||+||||||..|+++||..
T Consensus       105 ~~~~~~~la~~l~~~~~~~~~--------~~v~~~~sGseA~~~alk~a~~~  148 (453)
T 4ffc_A          105 PYEQYVQVAELLNALTPGDHD--------KRTALFNSGAEAVENAIKVARLA  148 (453)
T ss_dssp             CCHHHHHHHHHHHHHSSCSSC--------EEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCC--------cEEEEeCcHHHHHHHHHHHHHHh
Confidence            345556778899999874321        14899999999999999999864

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=94.93  E-value=0.068  Score=47.36  Aligned_cols=75  Identities=9%  Similarity=-0.057  Sum_probs=53.4

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +.+.+++++|.+.           .+++++||+++..++.+..    .               +.-.|+++..+|.+...
T Consensus         3 l~~~la~~~g~~~-----------~i~~~sG~~a~~~~~~~~~----~---------------~g~~v~~~~~~~~~~~~   52 (331)
T 1pff_A            3 LEGKIAKLEHAEA-----------CAATASGMGAIAASVWTFL----K---------------AGDHLISDDCLYGCTHA   52 (331)
T ss_dssp             HHHHHHHHHTCSE-----------EEEESSHHHHHHHHHHHHC----C---------------TTCEEEEESCCCHHHHH
T ss_pred             HHHHHHHHhCCCe-----------EEEeCChHHHHHHHHHHhc----C---------------CCCEEEEcCCCcchHHH
Confidence            3457788888762           5667777999998887641    1               11246778899999877


Q ss_pred             HH----HhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         256 AG----LLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       256 aa----~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      ++    ...|++++.+|.     +|+++|+++|+
T Consensus        53 ~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~   81 (331)
T 1pff_A           53 LFEHQLRKFGVEVDFIDM-----AVPGNIEKHLK   81 (331)
T ss_dssp             HHHTHHHHTTCEEEEECT-----TSTTHHHHTCC
T ss_pred             HHHHHHHhcCCEEEEeCC-----CCHHHHHHhhc
Confidence            75    347888888876     47777777765

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=94.88  E-value=0.12  Score=47.75  Aligned_cols=42  Identities=21%  Similarity=0.114  Sum_probs=32.4

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      ......++.++++++++ ..+         .-+||+|||++|..|+.+||..
T Consensus        90 ~~~~~~~l~~~l~~~~~-~~~---------~v~~~~~g~ea~~~al~~ar~~  131 (424)
T 2e7u_A           90 PSPLEVALAKKVKRAYP-FVD---------LVRFVNSGTEATMSALRLARGY  131 (424)
T ss_dssp             CCHHHHHHHHHHHHHCT-TCC---------EEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCC-CCC---------EEEEeCCHHHHHHHHHHHHHHh
Confidence            34566677788888885 221         4889999999999999998754

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=94.86  E-value=0.27  Score=44.83  Aligned_cols=74  Identities=15%  Similarity=0.006  Sum_probs=48.5

Q ss_pred             chhhHHHHHHHHHHHHHcC-CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         167 PACTELEVVMLDWLGKMLD-LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       167 p~~~~iE~~v~~~l~~llg-~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      +....+++.+.+|+.  .| .+++         .-++|+|+|+++..++.+     +.               +.-.|++
T Consensus        75 ~g~~~lr~~la~~l~--~g~~~~~---------~v~~~~G~~~al~~~~~~-----~~---------------~gd~Vl~  123 (400)
T 3asa_A           75 FGLPALRQKLSEDFY--RGFVDAK---------EIFISDGAKVDLFRLLSF-----FG---------------PNQTVAI  123 (400)
T ss_dssp             TCCHHHHHHHHHTTS--TTSSCGG---------GEEEESCHHHHHHHHHHH-----HC---------------SSCEEEE
T ss_pred             CCCHHHHHHHHHHHH--cCCCCHH---------HEEEccChHHHHHHHHHH-----cC---------------CCCEEEE
Confidence            345556655554432  46 4433         589999999998764321     11               1114566


Q ss_pred             cCCCcchHHHHHHhcCCc-eEEeeCCC
Q psy1678         246 SDQAHSSVERAGLLGGVT-IRGLPADD  271 (297)
Q Consensus       246 s~~aH~Si~Kaa~~lg~~-v~~Vp~d~  271 (297)
                      ..-+|.+...++...|.. ++.||+++
T Consensus       124 ~~p~y~~~~~~~~~~g~~~~~~~~~~~  150 (400)
T 3asa_A          124 QDPSYPAYLDIARLTGAKEIIALPCLQ  150 (400)
T ss_dssp             EESCCHHHHHHHHHTTCSEEEEEECCG
T ss_pred             CCCCcHHHHHHHHHcCCcceEecccch
Confidence            778899999999989988 88888764

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=94.79  E-value=0.3  Score=46.11  Aligned_cols=99  Identities=14%  Similarity=-0.033  Sum_probs=62.6

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ......++.+|++++++.+.+         .-+||+||||||..|++++|.....+    |.      ..++.+|.....
T Consensus        95 ~~~~~~~la~~l~~~~~~~~~---------~v~~~~sGseA~~~Aik~a~~~~~~~----g~------~~~~~vi~~~~~  155 (476)
T 3i5t_A           95 ATSPAARLAEKIATLTPGDLN---------RIFFTTGGSTAVDSALRFSEFYNNVL----GR------PQKKRIIVRYDG  155 (476)
T ss_dssp             BCHHHHHHHHHHHTTSSTTCC---------EEEEESSHHHHHHHHHHHHHHHHHHT----TC------TTCCEEEEETTC
T ss_pred             CCHHHHHHHHHHHhcCCCCcC---------EEEEeCchHHHHHHHHHHHHHHHHhc----CC------CCCCEEEEEcCC
Confidence            345666788899999975432         48999999999999999999864321    10      012345555566


Q ss_pred             CcchHHHHHHhcCC------------ceEEeeCCCC--C-CcC--------HHHHHHHHHH
Q psy1678         249 AHSSVERAGLLGGV------------TIRGLPADDS--Y-KLR--------GDALEAAIEE  286 (297)
Q Consensus       249 aH~Si~Kaa~~lg~------------~v~~Vp~d~~--~-~md--------~~~L~~~i~~  286 (297)
                      -|-+..-+..+.|.            ++..++....  + .+|        +++|++.|++
T Consensus       156 yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~  216 (476)
T 3i5t_A          156 YHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIES  216 (476)
T ss_dssp             CCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHh
Confidence            67665555554432            3455554321  1 223        7888888874

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=94.67  E-value=0.11  Score=48.13  Aligned_cols=80  Identities=9%  Similarity=-0.052  Sum_probs=55.0

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |...+...++++.+.+|+.  .|++-..       ..-+||+||++++..+ .+.    +.               +.-.
T Consensus       107 y~~~~g~~~lr~~ia~~~~--~g~~~~~-------~~i~~t~G~~~al~~~-~~l----~~---------------~gd~  157 (449)
T 3qgu_A          107 YGAEQGQGALREAVASTFY--GHAGRAA-------DEIFISDGSKCDIARI-QMM----FG---------------SKPT  157 (449)
T ss_dssp             STTTTCCHHHHHHHHHHHH--TTTTCCG-------GGEEEESCHHHHHHHH-HHH----HC---------------SSSC
T ss_pred             CCCCCCcHHHHHHHHHHHH--cCCCCCH-------HHEEEccCHHHHHHHH-HHH----hC---------------CCCE
Confidence            3333446778888888877  5553211       2589999999988765 221    11               1124


Q ss_pred             EEecCCCcchHHHHHHhcCCc----------eEEeeCCC
Q psy1678         243 GYCSDQAHSSVERAGLLGGVT----------IRGLPADD  271 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~----------v~~Vp~d~  271 (297)
                      |++++-+|.++..++...|.+          ++.+|+++
T Consensus       158 Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~  196 (449)
T 3qgu_A          158 VAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNP  196 (449)
T ss_dssp             EEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCG
T ss_pred             EEEcCCCChhHHHHHHHcCCcccccccccceeEEEeccc
Confidence            667889999999999999987          88888864

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=94.19  E-value=0.068  Score=49.22  Aligned_cols=74  Identities=12%  Similarity=0.051  Sum_probs=49.6

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+.+++++|.++           .+++++||+||..++. .    +.              ..+ .|+++...|.+..
T Consensus        59 ~lr~~la~~~g~~~-----------~i~~~sGt~a~~~al~-~----~~--------------~gd-~Vi~~~~~y~~~~  107 (393)
T 1n8p_A           59 NLERAVAALENAQY-----------GLAFSSGSATTATILQ-S----LP--------------QGS-HAVSIGDVYGGTH  107 (393)
T ss_dssp             HHHHHHHHHTTCSE-----------EEEESCHHHHHHHHHH-T----SC--------------SSC-EEEEESSCCHHHH
T ss_pred             HHHHHHHHHhCCCc-----------EEEECChHHHHHHHHH-H----cC--------------CCC-EEEEeCCCchHHH
Confidence            35567888888763           5666677999998876 2    11              012 4566777887555


Q ss_pred             H----HHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         255 R----AGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       255 K----aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      .    .+...|++++.||++     | ++|+++|+
T Consensus       108 ~~~~~~~~~~G~~v~~v~~~-----d-~~l~~~i~  136 (393)
T 1n8p_A          108 RYFTKVANAHGVETSFTNDL-----L-NDLPQLIK  136 (393)
T ss_dssp             HHHHHTSTTTCSCCEEESSH-----H-HHHHHHSC
T ss_pred             HHHHHHHHHcCcEEEEeCCC-----h-HHHHHhcc
Confidence            5    345568888888876     6 77777664

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=94.02  E-value=0.091  Score=49.18  Aligned_cols=42  Identities=12%  Similarity=-0.084  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHcC-CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         171 ELEVVMLDWLGKMLD-LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       171 ~iE~~v~~~l~~llg-~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      ....++.+.+++++| .+.         ..-+||+|||+||..|+++||.+.
T Consensus       101 ~~~~~la~~la~~~~~~~~---------~~v~~~~~gseA~~~aik~a~~~~  143 (449)
T 2cjg_A          101 VAMARFVETFARVLGDPAL---------PHLFFVEGGALAVENALKAAFDWK  143 (449)
T ss_dssp             HHHHHHHHHHHHHHCCTTC---------CEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCC---------CEEEEeCchHHHHHHHHHHHHHHh
Confidence            334455667777776 222         248999999999999999998643

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=93.81  E-value=0.11  Score=48.06  Aligned_cols=81  Identities=20%  Similarity=0.121  Sum_probs=53.9

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      .|....+|+    .+++++|.+.           .+++++|++++..++. .    +.               +.-.|++
T Consensus        66 ~p~~~~l~~----~la~~~g~~~-----------~i~~~sG~~ai~~~~~-l----~~---------------~gd~Vl~  110 (403)
T 3cog_A           66 NPTRNCLEK----AVAALDGAKY-----------CLAFASGLAATVTITH-L----LK---------------AGDQIIC  110 (403)
T ss_dssp             CHHHHHHHH----HHHHHHTCSE-----------EEEESCHHHHHHHHHT-T----SC---------------TTCEEEE
T ss_pred             CchHHHHHH----HHHHHhCCCc-----------EEEECCHHHHHHHHHH-H----hC---------------CCCEEEE
Confidence            355555555    5566677652           5666667888877765 2    11               1125777


Q ss_pred             cCCCcchHHHH----HHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSSVERA----GLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~Si~Ka----a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +...|.+....    +...|++++.||++     |+++|+++|++
T Consensus       111 ~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~~i~~  150 (403)
T 3cog_A          111 MDDVYGGTNRYFRQVASEFGLKISFVDCS-----KIKLLEAAITP  150 (403)
T ss_dssp             ESSCCHHHHHHHHHTGGGGTCEEEEECTT-----SHHHHHHHCCT
T ss_pred             eCCCcchHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCc
Confidence            88999885543    45679999999886     88888888753

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=93.22  E-value=0.3  Score=45.08  Aligned_cols=82  Identities=15%  Similarity=0.036  Sum_probs=53.5

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      ..|...++|+    .++++.|.+.           .+++++|++|+..++..     ..               +.-.|+
T Consensus        65 ~~p~~~~l~~----~la~l~g~~~-----------~~~~~sG~~Ai~~~~~l-----~~---------------~gd~Vi  109 (400)
T 3nmy_A           65 HNPTRFAYER----CVAALEGGTR-----------AFAFASGMAATSTVMEL-----LD---------------AGSHVV  109 (400)
T ss_dssp             CCHHHHHHHH----HHHHHHTCSE-----------EEEESSHHHHHHHHHTT-----SC---------------TTCEEE
T ss_pred             CCHHHHHHHH----HHHHHhCCCC-----------EEEecCHHHHHHHHHHH-----cC---------------CCCEEE
Confidence            3455556665    5777888753           67888889888753211     11               112567


Q ss_pred             ecCCCcchHHHHHHh-----cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         245 CSDQAHSSVERAGLL-----GGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       245 ~s~~aH~Si~Kaa~~-----lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ++...|.+.......     .|+.++.|+.+     |+++|+++|++
T Consensus       110 ~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~  151 (400)
T 3nmy_A          110 AMDDLYGGTFRLFERVRRRTAGLDFSFVDLT-----DPAAFKAAIRA  151 (400)
T ss_dssp             EESSCCHHHHHHHHHTHHHHHCCEEEEECTT-----SHHHHHHHCCT
T ss_pred             EeCCCchHHHHHHHHhhHhhcCeEEEEECCC-----CHHHHHHHhcc
Confidence            788899866665433     58888888876     78888887753

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=92.80  E-value=0.16  Score=48.03  Aligned_cols=44  Identities=7%  Similarity=-0.208  Sum_probs=32.9

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      ..+++..+.+.|+++++...+         ..+||+||||||..|+++||.+.
T Consensus       108 ~~~l~~~la~~l~~~~~~~~~---------~v~f~~sGseA~~~Aik~a~~~~  151 (472)
T 1ohv_A          108 PENFVEKLRESLLSVAPKGMS---------QLITMACGSCSNENAFKTIFMWY  151 (472)
T ss_dssp             BTTHHHHHHHTGGGGCCTTCC---------EEEEESSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCcC---------EEEEeCCchhHHHHHHHHHHHHh
Confidence            356777677777777643221         48899999999999999998653

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=92.72  E-value=0.13  Score=46.93  Aligned_cols=65  Identities=12%  Similarity=0.007  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhccccc-----cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHH
Q psy1678         146 AIVADILSDSIACIG-----FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGA  217 (297)
Q Consensus       146 svl~d~l~~~lN~n~-----~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~A  217 (297)
                      ..+.+.+...+..+.     ..|...+...++.+.+.+|+.+..|++-+.       ..-+||+|||+++..++.+.
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------~~i~~t~G~t~al~~~~~~l  118 (417)
T 3g7q_A           49 DYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEP-------QNIALTNGSQSAFFYLFNLF  118 (417)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCG-------GGEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCc-------ccEEEeCCcHHHHHHHHHHH
Confidence            445555555543321     234444556678888889998887765321       25899999999999998876

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=92.20  E-value=0.33  Score=45.91  Aligned_cols=41  Identities=22%  Similarity=0.105  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      ..|.+.-+.|++++..-+          .-.|+++|||||..|+++||.+.
T Consensus       127 ~~~~~lae~l~~~~p~~~----------~v~f~~SGsEA~e~AiklAr~~t  167 (454)
T 4ao9_A          127 LLEGRLARLICERFPQIE----------QLRFTNSGTEANLMALTAALHFT  167 (454)
T ss_dssp             SSHHHHHHHHHHHSTTCS----------EEEEESSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCC----------EEEEeCchHHHHHHHHHHHHhcc
Confidence            345556667788875332          37899999999999999999863

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=91.36  E-value=0.51  Score=43.07  Aligned_cols=81  Identities=11%  Similarity=-0.042  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .++.+.+.+|+. ..|++-..      ...-++|+|+++++..++.+..+    .    |       ...+..|++++-.
T Consensus        71 ~~lr~aia~~~~-~~g~~~~~------~~~i~~t~G~~~al~~~~~~l~~----~----G-------d~~~~~Vlv~~P~  128 (391)
T 3bwn_A           71 PELEDAIKDLHG-VVGNAATE------DRYIVVGTGSTQLCQAAVHALSS----L----A-------RSQPVSVVAAAPF  128 (391)
T ss_dssp             HHHHHHHHHHHH-HHCSBCCS------SSEEEEEEHHHHHHHHHHHHHHH----T----S-------SSSSEEEEECSSC
T ss_pred             HHHHHHHHHHHH-hcCCCCCC------CCeEEEeCChHHHHHHHHHHhcC----C----C-------CCCcceEEEcCCC
Confidence            677777777776 44553210      02589999999999888776421    0    1       0112257788899


Q ss_pred             cchHHHHHHhcCCceEEeeCCCC
Q psy1678         250 HSSVERAGLLGGVTIRGLPADDS  272 (297)
Q Consensus       250 H~Si~Kaa~~lg~~v~~Vp~d~~  272 (297)
                      |.++..+++..|.+++.+++|.+
T Consensus       129 y~~~~~~~~~~g~~~~~~~~d~~  151 (391)
T 3bwn_A          129 YSTYVEETTYVRSGMYKWEGDAW  151 (391)
T ss_dssp             CTHHHHHHHTTCBTTEEEEEEST
T ss_pred             chhHHHHHHHcCCeEEEecCCHH
Confidence            99999999999998888888754

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=90.35  E-value=0.15  Score=47.38  Aligned_cols=91  Identities=7%  Similarity=-0.133  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHHHHcCC--CccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec
Q psy1678         169 CTELEVVMLDWLGKMLDL--PKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS  246 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~--~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s  246 (297)
                      ..++++.+.+|+...-+.  ++         ..-++|+|+|+++..++.+-.... .    ..+      ..+.-.|+++
T Consensus       102 ~~~lr~aia~~~~~~~~~~~~~---------~~iv~t~G~~~al~~~~~~l~~~~-~----~~~------~~~Gd~Vlv~  161 (427)
T 2hox_A          102 SFELEKTIKELHEVVGNAAAKD---------RYIVFGVGVTQLIHGLVISLSPNM-T----ATP------DAPESKVVAH  161 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCBCCTT---------CEEEEESHHHHHHHHHHHHHSCCT-T----TCT------TSCCEEEEEC
T ss_pred             hHHHHHHHHHHHHHhCCcCCCC---------CEEEEeCCHHHHHHHHHHHHhhcc-c----ccc------CCCCCEEEEe
Confidence            577888888888765442  22         248999999999988776531000 0    000      0122367788


Q ss_pred             CCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         247 DQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       247 ~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      .-.|.++..+++..|..++.      +.+|+++|++++.
T Consensus       162 ~P~y~~~~~~~~~~g~~~~~------~~~d~~~l~~~~~  194 (427)
T 2hox_A          162 APFYPVFREQTKYFDKKGYV------WAGNAANYVNVSN  194 (427)
T ss_dssp             SSCCHHHHHHHHHSCBTTEE------EEEEGGGGTTCSC
T ss_pred             CCCcccHHHHHHHcCCeeee------ecCCHHHHHHhhc
Confidence            89999999999999987763      4577778777664

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=89.00  E-value=1.3  Score=41.89  Aligned_cols=44  Identities=11%  Similarity=-0.025  Sum_probs=32.9

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHH
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTM  222 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~  222 (297)
                      +..+.++.+.|+++...+-+         --.|+++|||||-.|++.||.+..
T Consensus       110 ~~~~~~lAe~L~~~~p~~~~---------~v~f~~sGsEA~e~AiKlAr~~~~  153 (473)
T 4e3q_A          110 SDQTVMLSEKLVEVSPFDSG---------RVFYTNSGSEANDTMVKMLWFLHA  153 (473)
T ss_dssp             EHHHHHHHHHHHHHSSCSSC---------EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhCCCCcc---------EEEEeCchHHHHHHHHHHHHHHHH
Confidence            34455566788888865422         377999999999999999998643

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=88.40  E-value=0.58  Score=45.10  Aligned_cols=93  Identities=11%  Similarity=0.014  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHcCC---CccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         171 ELEVVMLDWLGKMLDL---PKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~---~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      ..|..+-.|+.+..+.   +...       ..-++|+|+++++..++.+...+.+-              .+.-.|++++
T Consensus       143 lr~~ia~~~~~~~~~~~~~~~~~-------~~I~~t~G~~eal~~~~~~l~~~~l~--------------~~Gd~Vlv~~  201 (546)
T 2zy4_A          143 ISEKIVRQYIIREMGADAIPSES-------VNLFAVEGGTAAMAYIFESLKLNGLL--------------KAGDKVAIGM  201 (546)
T ss_dssp             HHHHHHHHHHHHHTTCTTSCGGG-------EEEEEEEHHHHHHHHHHHHHHHTTSS--------------CTTCEEEEEE
T ss_pred             HHHHHHHHHHHHhccCCCCCCCc-------ceEEEECCHHHHHHHHHHHhhhhhcC--------------CCCCEEEEeC
Confidence            4455555677766543   2110       15889999999998887663111110              1112466777


Q ss_pred             CCcchHHHHHHhc--CCceEEeeCCC--CCCcCHHHHHHHH
Q psy1678         248 QAHSSVERAGLLG--GVTIRGLPADD--SYKLRGDALEAAI  284 (297)
Q Consensus       248 ~aH~Si~Kaa~~l--g~~v~~Vp~d~--~~~md~~~L~~~i  284 (297)
                      -+|+....++.+.  |+.++.||+++  ++.+|+++|++.+
T Consensus       202 P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~  242 (546)
T 2zy4_A          202 PVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLK  242 (546)
T ss_dssp             SCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGG
T ss_pred             CCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhh
Confidence            8899988887765  56888898875  3579999998765

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=82.50  E-value=0.29  Score=46.41  Aligned_cols=39  Identities=23%  Similarity=0.188  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHcC-CCccccccCCCCCCeEEcCChhHHHHHHHHHHHHH
Q psy1678         171 ELEVVMLDWLGKMLD-LPKEFLACSGGKGGGVIQGTASEATLVALLGAKAK  220 (297)
Q Consensus       171 ~iE~~v~~~l~~llg-~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~  220 (297)
                      ..+.++.+.|+++++ .+           .-.|+++|||||..|+++||..
T Consensus       140 ~~~~~Lae~L~~~~p~~~-----------~v~~~nSGseA~~~Aik~ar~~  179 (465)
T 2yky_A          140 ENEALFAEAVCDRFPSID-----------LVRFTNSGTEANLMALATATAI  179 (465)
Confidence            344555567777774 32           3789999999999999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	297
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	6e-79
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	9e-24
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	3e-15
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	0.001

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  245 bits (626), Expect = 6e-79
 Identities = 139/238 (58%), Positives = 183/238 (76%)

Query: 60  DVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIE 119
           + ++F+   K MVDY+ +YLE I  R+V P V+PGYLRPLIP TAP  PDT+++++ D+E
Sbjct: 2   NASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVE 61

Query: 120 RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDW 179
           ++IMPGVTHWHSP F AYFPTA+SYPA++AD+L  +I CIGF+W ASPACTELE VM+DW
Sbjct: 62  KIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDW 121

Query: 180 LGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIA 239
           LGKML LP+ FLA   G+GGGVIQG+ASEATLVALL A+ K ++R++ A P      ++ 
Sbjct: 122 LGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLE 181

Query: 240 NLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
            LV Y SDQAHSSVERAGL+GGV ++ +P+D  + +R  AL+ A+E D   G IPF++
Sbjct: 182 KLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV 239

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score = 98.0 bits (243), Expect = 9e-24
 Identities = 26/220 (11%), Positives = 65/220 (29%), Gaps = 23/220 (10%)

Query: 69  KAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTH 128
           K + D     L++    + + T+         P         +Q +  ++    + G   
Sbjct: 2   KQVTDLRSELLDSRFGAKSISTIAE---SKRFPLHEMRDDVAFQIINDEL---YLDGNAR 55

Query: 129 WHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPK 188
            +   F   +         V  ++  SI          P    +++  ++ +  +   P 
Sbjct: 56  QNLATFCQTW-----DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPA 110

Query: 189 EFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ 248
                  G+  G     +SEA ++  +  K +  +R++ A           +        
Sbjct: 111 PK----NGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPT-------DKPNLVCGP 159

Query: 249 AHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEED 287
                 +      V +R +P       +    +  A +E+
Sbjct: 160 VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDEN 199

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 73.4 bits (179), Expect = 3e-15
 Identities = 32/254 (12%), Positives = 75/254 (29%), Gaps = 48/254 (18%)

Query: 53  MGSNIMGDV-NEFKDFAKAMVDYVGNYLENIRDRRVLPT--VEPGYLRPLIPETAPDTPD 109
           +  NI G +    +   + +++     +E++ + R +P   ++   ++  +   +    D
Sbjct: 2   LDFNIEGLIPKNMEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTD 61

Query: 110 TWQEVMSDIE---RVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIAS 166
              + +   E   R          S   H    + N     + D    +           
Sbjct: 62  KDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGN-----LVDPQPKASGASIMYA--- 113

Query: 167 PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK 226
                L   +L+   K L          G     +    ++  ++   L A  K      
Sbjct: 114 -----LTNKILESFFKQL----------GLNVHAIATPISTGMSISLCLSAARKKYGS-- 156

Query: 227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGG---VTIRGLPADDSYKLRGDALEAA 283
                          V      +H S  +A    G     +  +   D   +  + +E A
Sbjct: 157 --------------NVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENA 202

Query: 284 IEEDLKKGKIPFYI 297
           I+++++ G  P  +
Sbjct: 203 IKKEIELGNRPCVL 216

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 19/172 (11%), Positives = 44/172 (25%), Gaps = 26/172 (15%)

Query: 129 WHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPK 188
               +  +       Y  I     S  I+ +      S    ++   ++  + K+  +  
Sbjct: 52  EREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHS 111

Query: 189 EFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ 248
                        +   A+  +L                       +  I          
Sbjct: 112 V--------ASCFVVPMATGMSLTLCFLT----------LRHKRPKAKYI-----IWPRI 148

Query: 249 AHSSVERAGLLGG---VTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI 297
              S  ++ +  G   V I  +   D  +    A+EA I+E   +  +  + 
Sbjct: 149 DQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHS 200

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	297
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	100.0
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.94
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.7
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.56
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	98.62
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	98.5
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	98.27
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	98.24
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	97.95
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	97.94
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	97.66
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	97.62
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	97.62
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	97.44
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	97.39
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	97.35
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	97.32
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	97.3
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	97.0
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	96.94
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	96.87
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	96.87
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	96.82
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	96.51
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	96.48
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	96.38
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	96.36
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	96.35
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	96.28
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	96.24
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	96.23
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	96.16
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	96.08
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	95.89
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	95.65
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	95.63
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	95.53
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	95.42
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	95.14
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	95.1
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	95.03
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	94.77
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	94.11
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	94.07
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	93.93
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	93.67
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	93.67
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	92.8
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	92.21
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	91.93
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	91.75
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	91.31
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	89.88
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	88.4
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	87.79
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	87.34
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	85.24
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	84.19
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	82.86
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	81.28

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.4e-53  Score=409.69  Aligned_cols=239  Identities=56%  Similarity=1.034  Sum_probs=219.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHhhhhhcchhhhhccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhh
Q psy1678          17 GDVNEFKDFAKAMVDYVGNYLENIRDRYVQLQRFSQMGSNIMGDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYL   96 (297)
Q Consensus        17 ~~~~~f~~~~~~~vd~i~~y~~~~~~~~v~~~v~p~l~~~~p~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p~~l   96 (297)
                      ||+|+||+.|++|||||+||++++++|||.|.++|+                                          ++
T Consensus         1 m~~~~fr~~~~~~~d~i~d~~~~~~~~~v~~~~~p~------------------------------------------~l   38 (476)
T d1js3a_           1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPG------------------------------------------YL   38 (476)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCCCCTT------------------------------------------CS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChH------------------------------------------HH
Confidence            899999999999999999999999999888776654                                          35


Q ss_pred             hccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHH
Q psy1678          97 RPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVM  176 (297)
Q Consensus        97 ~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v  176 (297)
                      ++.++..+|++|.+.+++++++.+.+.+++++|+||||+||+++++++++++++++++++|+|+.+|+.||++++||++|
T Consensus        39 ~~~~~~~~P~~g~~~~~~l~~~~~~i~~~~~~~~~P~f~~~~~~~~~~~~~l~~~~~~~~n~n~~~~~~sp~~t~iE~~v  118 (476)
T d1js3a_          39 RPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVM  118 (476)
T ss_dssp             GGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHH
T ss_pred             HHhcCcccCcCCCCHHHHHHHHHHHHhCCCCCCCCCCeeEeCCCCCCHHHHHHHHHHHhhcccccchhhhhhHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678         177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA  256 (297)
Q Consensus       177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka  256 (297)
                      ++||++|+|+|+++.....+.++|+||+|||+||++||++||++.+++.+..+.++.+.+..+++++|||+++|||+.||
T Consensus       119 ~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka  198 (476)
T d1js3a_         119 MDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERA  198 (476)
T ss_dssp             HHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHH
T ss_pred             HHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHHHHH
Confidence            99999999999987655566789999999999999999999999887766555444433334689999999999999999


Q ss_pred             HHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCccEEc
Q psy1678         257 GLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKIPFYI  297 (297)
Q Consensus       257 a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~Pf~v  297 (297)
                      |.++|+++++||+|++|+||+++|+++|++++++|+.||+|
T Consensus       199 ~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~V  239 (476)
T d1js3a_         199 GLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFV  239 (476)
T ss_dssp             HHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEE
Confidence            99999999999999999999999999999999999999986

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.3e-26  Score=217.19  Aligned_cols=170  Identities=13%  Similarity=0.115  Sum_probs=137.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHc-CCCCCCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCchhhHHHHHHHHHH
Q psy1678         102 ETAPDTPDTWQEVMSDIERVIM-PGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASPACTELEVVMLDWL  180 (297)
Q Consensus       102 ~~lP~~g~~~~~il~~l~~~~~-~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l  180 (297)
                      ..+|++|.+.+++.+.+.+.+. ++..+++   +..++.+..  ...+.++++.++|+|...++.+|++++||++|++||
T Consensus        28 ~~~p~~~~~~~~~~~~i~d~l~~dg~~~~n---~asf~~t~~--~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~l  102 (450)
T d1pmma_          28 KRFPLHEMRDDVAFQIINDELYLDGNARQN---LATFCQTWD--DENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMV  102 (450)
T ss_dssp             SSCCCSCCCHHHHHHHHHHHGGGSCCGGGB---CSCCSCCCC--CHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHH
T ss_pred             ccCCccCCCHHHHHHHHHHHhccCCCcccc---ccccccCCC--CHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHH
Confidence            4789999999999999987643 3322222   333333322  245789999999999999999999999999999999


Q ss_pred             HHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhc
Q psy1678         181 GKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLG  260 (297)
Q Consensus       181 ~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~l  260 (297)
                      ++|+|+|+.+    .+.++|++|+||||||++|+++||+++..+.+..|.       .....+|+|.++|+|+.|||+++
T Consensus       103 a~L~~~p~~~----~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~-------~~~~~~~~~~~~H~s~~Kaa~~~  171 (450)
T d1pmma_         103 ADLWHAPAPK----NGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGK-------PTDKPNLVCGPVQICWHKFARYW  171 (450)
T ss_dssp             HHHTTCCCCT----TSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTC-------CCSCCEEEESSCCHHHHHHHHHT
T ss_pred             HHHhCCCccc----cCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCC-------CCCCceEEecccHHHHHHHHHHc
Confidence            9999999742    235679999999999999999999998777655443       22335677889999999999999


Q ss_pred             CCceEEeeCCC-CCCcCHHHHHHHHHHH
Q psy1678         261 GVTIRGLPADD-SYKLRGDALEAAIEED  287 (297)
Q Consensus       261 g~~v~~Vp~d~-~~~md~~~L~~~i~~~  287 (297)
                      |++++.||+++ +|+||+++|+++|+++
T Consensus       172 gi~~~~v~~~~~~~~~d~~~L~~~i~~~  199 (450)
T d1pmma_         172 DVELREIPMRPGQLFMDPKRMIEACDEN  199 (450)
T ss_dssp             TCEEEECCCBTTBCSCCHHHHHHHCCTT
T ss_pred             CCCceEeeecCCCCcCcHHHHHHHhhhC
Confidence            99999999986 6999999999998764

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.4e-17  Score=154.45  Aligned_cols=162  Identities=9%  Similarity=-0.037  Sum_probs=116.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHHHhcccccccccc-------------Cch
Q psy1678         102 ETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIA-------------SPA  168 (297)
Q Consensus       102 ~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~-------------~p~  168 (297)
                      ..+|++|.+.++++..+.++...+.     +.|.+++..+.....+.++++...++.+...+..             ++.
T Consensus        17 ~~lP~~G~~~~~i~~~l~~~~~~d~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (445)
T d3bc8a1          17 GKCPEDGWDESTLELFLHELAVMDS-----NNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSL   91 (445)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHTBG-----GGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCBCC-------CCSBHHHHH
T ss_pred             CCCCcCCCCHHHHHHHHHHHHhccC-----CcccCcccccccCccccHHHHHHHHHhhccccccCcchhhhhhhhccchH
Confidence            4689999999999999888754332     2344433332222223344555554443333221             224


Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ...||.++++|+++++|++..        +.|++|+|||+++++++++|+.+..               .++.+|++|..
T Consensus        92 ~~~le~~~~~~~~~l~g~~~~--------~~~~~~~~~t~~~~~~~l~a~~~~~---------------~~~~~vi~~~~  148 (445)
T d3bc8a1          92 LNKITNSLVLNVIKLAGVHSV--------ASCFVVPMATGMSLTLCFLTLRHKR---------------PKAKYIIWPRI  148 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTC--------CEEEEESSCHHHHHHHHHHHHHHHC---------------TTCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHhCCCcc--------cCccccccchHHHHHHHHHHHHHhC---------------CCCCEEEEcCc
Confidence            578999999999999999875        4799999999988887777764321               13447889999


Q ss_pred             CcchHHHHHHhcCCceEEee---CCCCCCcCHHHHHHHHHHHHHCC
Q psy1678         249 AHSSVERAGLLGGVTIRGLP---ADDSYKLRGDALEAAIEEDLKKG  291 (297)
Q Consensus       249 aH~Si~Kaa~~lg~~v~~Vp---~d~~~~md~~~L~~~i~~~~~~G  291 (297)
                      +|+|+.||+.++|+..+.|+   ++++++||+++|+++|++....+
T Consensus       149 ~H~s~~~a~~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~~  194 (445)
T d3bc8a1         149 DQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEH  194 (445)
T ss_dssp             CCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGGG
T ss_pred             ccHHHHHHHHHcCCeeEEEEeeccCcccccCHHHHHHHHHhccccC
Confidence            99999999999999877664   57889999999999999876554

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.56  E-value=5.6e-14  Score=130.87  Aligned_cols=195  Identities=14%  Similarity=0.073  Sum_probs=130.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccC
Q psy1678          59 GDVNEFKDFAKAMVDYVGNYLENIRDRRVLPTVEPGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYF  138 (297)
Q Consensus        59 ~~~e~f~~~l~~v~d~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~  138 (297)
                      +-++.+++..+.+++...+.++++.              +.  ..+|++|.+.+++++.+.+....+...|.+....|..
T Consensus         9 ~ip~~~~~~~~~~~~~~~~~~~~l~--------------~~--~~lP~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~g~~   72 (434)
T d2z67a1           9 LIPKNMEKRGELVLNEYLKEIEDVF--------------NH--RKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGER   72 (434)
T ss_dssp             SSCHHHHHHHHHHHHHHTHHHHHHH--------------HH--CSCCSSCCCHHHHHHHHHHHHTTBGGGCTTCEECSSC
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHH--------------hc--ccCCCCCCCHHHHHHHHHHHHhcCcccccccccccce
Confidence            3457788888888888777666532              11  3579999999999999999876665566655545543


Q ss_pred             CCCCCHHHHHHHHHHH---hcccccccccc------CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHH
Q psy1678         139 PTANSYPAIVADILSD---SIACIGFTWIA------SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEA  209 (297)
Q Consensus       139 ~s~~~~~svl~d~l~~---~lN~n~~~~~~------~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~a  209 (297)
                      ... .+..++......   ....+......      +.....+|.+++.|+++++|.+..         ++.+..||+++
T Consensus        73 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~---------~~~~~~~t~~~  142 (434)
T d2z67a1          73 EAR-TYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH---------AIATPISTGMS  142 (434)
T ss_dssp             CCC-CSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE---------EEEESSCHHHH
T ss_pred             ecc-cchhHHhhcccccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHhcCCCcc---------eeecCcHHHHH
Confidence            322 122223222111   11111111111      123468999999999999999863         23334455555


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEee---CCCCCCcCHHHHHHHHHH
Q psy1678         210 TLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLP---ADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       210 nl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp---~d~~~~md~~~L~~~i~~  286 (297)
                      +..+|.++|...                 ++..|++|..+|+|+.|++.+.|+..+.|+   .+++++||+++|+++|++
T Consensus       143 ~~~~l~a~r~~~-----------------~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~  205 (434)
T d2z67a1         143 ISLCLSAARKKY-----------------GSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKK  205 (434)
T ss_dssp             HHHHHHHHHHHH-----------------CCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh-----------------cCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHh
Confidence            555555554431                 234788999999999999999999776665   467899999999999999


Q ss_pred             HHHCCCccEE
Q psy1678         287 DLKKGKIPFY  296 (297)
Q Consensus       287 ~~~~G~~Pf~  296 (297)
                      +.+.|.++++
T Consensus       206 ~~~~~~~~~v  215 (434)
T d2z67a1         206 EIELGNRPCV  215 (434)
T ss_dssp             HHHTTCCEEE
T ss_pred             hhhcCCceEE
Confidence            9998877754

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.62  E-value=1e-07  Score=84.75  Aligned_cols=89  Identities=21%  Similarity=0.283  Sum_probs=72.6

Q ss_pred             HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678         177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA  256 (297)
Q Consensus       177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka  256 (297)
                      -+.+|+++|.++           .+||+|||+||+.++.+.-    .               +.-.|++++.+|+|+..+
T Consensus        53 ~~~~A~~~g~e~-----------~~~t~g~t~a~~~~~~al~----~---------------~gd~Vi~~~~~h~s~~~~  102 (364)
T d2e7ja1          53 HNQLPKFLGCDV-----------ARVTNGAREAKFAVMHSLA----K---------------KDAWVVMDENCHYSSYVA  102 (364)
T ss_dssp             HTHHHHHTTSSE-----------EEEESSHHHHHHHHHHHHC----C---------------TTCEEEEETTCCHHHHHH
T ss_pred             HHHHHHHhCcCE-----------EEEECcHHHHHHHHHHHHh----C---------------CCcEEEeecccccccchH
Confidence            356788999864           7899999999999887641    1               122577899999999999


Q ss_pred             HHhcCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCCCccE
Q psy1678         257 GLLGGVTIRGLPADD--SYKLRGDALEAAIEEDLKKGKIPF  295 (297)
Q Consensus       257 a~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G~~Pf  295 (297)
                      +...|.+++.||+++  ++.+|++.|++.|++..+++...+
T Consensus       103 ~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~l  143 (364)
T d2e7ja1         103 AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVL  143 (364)
T ss_dssp             HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEE
T ss_pred             HHhccceEEEeeeccccccccCHHHHHhhhhhhcccCCceE
Confidence            999999999999874  789999999999998877665443

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=3.2e-07  Score=82.85  Aligned_cols=130  Identities=16%  Similarity=0.125  Sum_probs=91.5

Q ss_pred             ccccccCCCCCCHHHHHHHHHHHhccccc-------cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcC
Q psy1678         132 PKFHAYFPTANSYPAIVADILSDSIACIG-------FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQG  204 (297)
Q Consensus       132 p~~~g~~~s~~~~~svl~d~l~~~lN~n~-------~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~ts  204 (297)
                      |-|+.|--+++.++.++ +.+..++....       ..+..+..++.+=.++.+-+++++|.+++         .-+||+
T Consensus         3 ~iYlD~aa~~p~~~~v~-ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~---------~I~~~~   72 (391)
T d1p3wa_           3 PIYLDYSATTPVDPRVA-EKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR---------EIVFTS   72 (391)
T ss_dssp             SEECBTTTCCCCCHHHH-HHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG---------GEEEES
T ss_pred             eEEeeCccccCCCHHHH-HHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCC---------cEEEEC
Confidence            56888777777777765 55555543221       11111212233333577889999999875         589999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHH---hcCCceEEeeCCCCCCcCHHHHH
Q psy1678         205 TASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGL---LGGVTIRGLPADDSYKLRGDALE  281 (297)
Q Consensus       205 GGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~---~lg~~v~~Vp~d~~~~md~~~L~  281 (297)
                      |+|+++..++.+.....+.               +.-.|++++..|+|+....+   ..|++++.||.|++|.+|+++++
T Consensus        73 ~~t~~l~~~~~~~~~~~~~---------------~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~  137 (391)
T d1p3wa_          73 GATESDNLAIKGAANFYQK---------------KGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELE  137 (391)
T ss_dssp             SHHHHHHHHHHHHHHHHGG---------------GCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHH
T ss_pred             CHHHHHHHHHhhhhhhhcC---------------CCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHH
Confidence            9999998888876554332               11267889999999876554   45999999999999999999999


Q ss_pred             HHHHH
Q psy1678         282 AAIEE  286 (297)
Q Consensus       282 ~~i~~  286 (297)
                      ++|++
T Consensus       138 ~~i~~  142 (391)
T d1p3wa_         138 AAMRD  142 (391)
T ss_dssp             HHCCT
T ss_pred             HhCCC
Confidence            99864

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.27  E-value=2.8e-06  Score=76.00  Aligned_cols=128  Identities=13%  Similarity=0.058  Sum_probs=83.1

Q ss_pred             ccccCCCCCCHHHHHHHHHHHhccc--cccc-cccC-chhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHH
Q psy1678         134 FHAYFPTANSYPAIVADILSDSIAC--IGFT-WIAS-PACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEA  209 (297)
Q Consensus       134 ~~g~~~s~~~~~svl~d~l~~~lN~--n~~~-~~~~-p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~a  209 (297)
                      |+.+--+++.+.+++..+...+-+.  |... +..+ .+...+| ++.+.+++++|.+++         .-+||+|+|++
T Consensus         4 yld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~-~aR~~ia~l~~~~~~---------~i~~~~~~T~~   73 (376)
T d1eg5a_           4 YFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHME-KAREKVAKVLGVSPS---------EIFFTSCATES   73 (376)
T ss_dssp             ECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHH-HHHHHHHHHHTSCGG---------GEEEESCHHHH
T ss_pred             EEECcccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHH-HHHHHHHHHcCCCCC---------cEEEECCHHHH
Confidence            5666555555666554433322222  1111 1111 1233344 467899999999875         58999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHh---cCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         210 TLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       210 nl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      +..++.+......               .+.-.++.+...|++..-..+.   .|++|+.||+|++|++|+++|+++|++
T Consensus        74 l~~~~~~~~~~~~---------------~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~  138 (376)
T d1eg5a_          74 INWILKTVAETFE---------------KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE  138 (376)
T ss_dssp             HHHHHHHHHHHTT---------------TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT
T ss_pred             HHhhhhccccccc---------------ccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcCC
Confidence            8887765433211               1223566777778777665544   499999999999999999999999864

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=98.24  E-value=3.8e-07  Score=78.99  Aligned_cols=112  Identities=12%  Similarity=0.061  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHH
Q psy1678         145 PAIVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQR  224 (297)
Q Consensus       145 ~svl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~  224 (297)
                      +.++.-+..+..+ ....|...|.    ..++.+++|+++|.+.          ..+||+|||+||+.|+.+++..    
T Consensus        17 P~v~~A~~~a~~~-~~~~~~~~~~----~~~l~~~la~~~g~~~----------~v~f~~sGt~An~~a~~~~~~~----   77 (345)
T d1v72a1          17 PEVAQALVKHSSG-QAGPYGTDEL----TAQVKRKFCEIFERDV----------EVFLVPTGTAANALCLSAMTPP----   77 (345)
T ss_dssp             HHHHHHHHHTTSS-CCCSTTCSHH----HHHHHHHHHHHHTSCC----------EEEEESCHHHHHHHHHHTSCCT----
T ss_pred             HHHHHHHHHHhcc-CccccCCCHH----HHHHHHHHHHHHCCCc----------EEEECCchHHHHHHHHHHHHhc----
Confidence            4555544443332 2334544444    4456678899999864          4889999999999999876431    


Q ss_pred             HHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHh---cCCceEEeeCCCCCCcCHHHHHHHHHHHHHC
Q psy1678         225 VKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEEDLKK  290 (297)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~  290 (297)
                                     .-.++.....|+++...+.+   .+..+..++.+.++.++++.|++.+.+....
T Consensus        78 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  131 (345)
T d1v72a1          78 ---------------WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGD  131 (345)
T ss_dssp             ---------------TEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTC
T ss_pred             ---------------CCccccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhcccccc
Confidence                           22456778889998876543   4567888888889999999999988765443

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=3.1e-05  Score=70.07  Aligned_cols=130  Identities=12%  Similarity=0.013  Sum_probs=85.6

Q ss_pred             cccccCCCCCCHHHHHHHH---HHHhc-ccccccccc-CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678         133 KFHAYFPTANSYPAIVADI---LSDSI-ACIGFTWIA-SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS  207 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl~d~---l~~~l-N~n~~~~~~-~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT  207 (297)
                      -||.+-.+++.+..++-.+   +...+ |.+...+.. ..+...+| ++.+.+++++|..+..        ..+||+|+|
T Consensus        24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e-~~R~~ia~~l~~~~~~--------~i~~~~~~T   94 (405)
T d1jf9a_          24 AYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKME-NVRKRASLFINARSAE--------ELVFVRGTT   94 (405)
T ss_dssp             EECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHH-HHHHHHHHHTTCSCGG--------GEEEESSHH
T ss_pred             EEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHH-HHHHHHHHHcCCCCcc--------cccccCcHH
Confidence            3787776666666554333   22221 222111111 12234455 5889999999965421        589999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHH----HhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678         208 EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAG----LLGGVTIRGLPADDSYKLRGDALEAA  283 (297)
Q Consensus       208 ~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa----~~lg~~v~~Vp~d~~~~md~~~L~~~  283 (297)
                      +++...+........               .+.-.|+++...|+|...+.    .-.|++|+.||+|++|.+|++.++++
T Consensus        95 ~~~~~~~~~~~~~~~---------------~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~  159 (405)
T d1jf9a_          95 EGINLVANSWGNSNV---------------RAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTL  159 (405)
T ss_dssp             HHHHHHHHHHHHHHC---------------CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHH
T ss_pred             HHHHHHHhccccccc---------------CCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHh
Confidence            999887766433211               12336788899999965544    45699999999999999999999887


Q ss_pred             HHH
Q psy1678         284 IEE  286 (297)
Q Consensus       284 i~~  286 (297)
                      +.+
T Consensus       160 i~~  162 (405)
T d1jf9a_         160 FDE  162 (405)
T ss_dssp             CCT
T ss_pred             ccC
Confidence            654

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=97.94  E-value=6.7e-06  Score=73.51  Aligned_cols=125  Identities=11%  Similarity=0.048  Sum_probs=79.0

Q ss_pred             cccccCCCCCCHHHHH---HHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHH
Q psy1678         133 KFHAYFPTANSYPAIV---ADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEA  209 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl---~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~a  209 (297)
                      -||++-..++.+..++   .+++....++.......+.....+..++.+.+++++|.+++         ..+||+|||++
T Consensus         9 ~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~---------~i~~~~g~t~a   79 (381)
T d1elua_           9 TYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPN---------TITITDNVTTG   79 (381)
T ss_dssp             EECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGG---------GEEEESSHHHH
T ss_pred             EEeeCCcccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcc---------cEEEECChHHH
Confidence            3777665555555443   33343333333333444444445555688899999999764         48999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHH----hcCCceEEeeCCCCCCcC--HHHHHHH
Q psy1678         210 TLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGL----LGGVTIRGLPADDSYKLR--GDALEAA  283 (297)
Q Consensus       210 nl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~----~lg~~v~~Vp~d~~~~md--~~~L~~~  283 (297)
                      +.+++.+.+.                  .+.-.|+++...|+|+..+..    ..|+.++.||.+.....+  .+.|+++
T Consensus        80 ~~~~~~~l~~------------------~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~  141 (381)
T d1elua_          80 CDIVLWGLDW------------------HQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANH  141 (381)
T ss_dssp             HHHHHHHSCC------------------CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTT
T ss_pred             hhhcchhhhh------------------cCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhh
Confidence            9887765311                  122256778899988766544    468999999987655443  3444444


Q ss_pred             H
Q psy1678         284 I  284 (297)
Q Consensus       284 i  284 (297)
                      +
T Consensus       142 i  142 (381)
T d1elua_         142 L  142 (381)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=97.66  E-value=0.00015  Score=65.40  Aligned_cols=130  Identities=12%  Similarity=0.016  Sum_probs=86.9

Q ss_pred             cccccCCCCCCHHHHHHHHHHHhccccc----cccccCch-hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678         133 KFHAYFPTANSYPAIVADILSDSIACIG----FTWIASPA-CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS  207 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl~d~l~~~lN~n~----~~~~~~p~-~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT  207 (297)
                      -||.+-.+++.+..++-.+....-|.+.    ..+..+-. ...+|+ +.+-+++++|.+...        ..+||+++|
T Consensus        24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~-aR~~ia~llga~~~~--------~i~~~~~tt   94 (408)
T d1t3ia_          24 VYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEA-VRNKVAKFINARSPR--------EIVYTRNAT   94 (408)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHH-HHHHHHHHTTCSCGG--------GEEEESSHH
T ss_pred             EEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHH-HHHHHHHHhCCCCcc--------cEEeecchH
Confidence            3888887777776665443332322221    12222222 245554 788999999997431        488999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH----HHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678         208 EATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA----GLLGGVTIRGLPADDSYKLRGDALEAA  283 (297)
Q Consensus       208 ~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka----a~~lg~~v~~Vp~d~~~~md~~~L~~~  283 (297)
                      +++...+.......+               .+.-.|++++..|.|+.-+    +.-.|+.++.||.+.++..+.+.|+++
T Consensus        95 ~~~n~~~~~~~~~~~---------------~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~  159 (408)
T d1t3ia_          95 EAINLVAYSWGMNNL---------------KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTL  159 (408)
T ss_dssp             HHHHHHHHHTHHHHC---------------CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHH
T ss_pred             HHHHHHHhhcccccc---------------CCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhc
Confidence            998776666433211               1223678899999886554    445699999999999999999999988


Q ss_pred             HHH
Q psy1678         284 IEE  286 (297)
Q Consensus       284 i~~  286 (297)
                      +.+
T Consensus       160 ~~~  162 (408)
T d1t3ia_         160 LSE  162 (408)
T ss_dssp             CCT
T ss_pred             cCC
Confidence            754

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=97.62  E-value=8.7e-05  Score=62.58  Aligned_cols=40  Identities=15%  Similarity=0.140  Sum_probs=33.0

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHH
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAK  218 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR  218 (297)
                      .....++.+.+++++|.++.         .++||+||||||++|+..++
T Consensus        34 ~~~~~~lr~~ia~~~g~~~~---------~v~~tsggtean~~a~~~~~   73 (340)
T d1svva_          34 DSHCAKAARLIGELLERPDA---------DVHFISGGTQTNLIACSLAL   73 (340)
T ss_dssp             SHHHHHHHHHHHHHHTCTTS---------EEEEESCHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHhCCCcc---------eEEEcCCHHHHHHHHHHHHh
Confidence            44556788999999999863         59999999999999888753

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.62  E-value=0.00011  Score=65.10  Aligned_cols=90  Identities=18%  Similarity=0.122  Sum_probs=73.7

Q ss_pred             ccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEE
Q psy1678         164 IASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVG  243 (297)
Q Consensus       164 ~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i  243 (297)
                      ..+|...++|+    .+++++|...           .++|+.||.|+..|+.+..   +               .+.-.|
T Consensus        28 ~~G~~v~~~E~----~la~~~g~~~-----------ai~~~sgt~Al~~al~al~---~---------------~~gdeV   74 (376)
T d1mdoa_          28 TTGPKNQELEA----AFCRLTGNQY-----------AVAVSSATAGMHIALMALG---I---------------GEGDEV   74 (376)
T ss_dssp             SSSHHHHHHHH----HHHHHHCCSE-----------EEEESCHHHHHHHHHHHTT---C---------------CTTCEE
T ss_pred             cCCHHHHHHHH----HHHHHHCcCe-----------EEEeCCHHHHHHHHHHHhC---C---------------CCCCEE
Confidence            35788888885    7889999853           7889999999999987631   1               122367


Q ss_pred             EecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         244 YCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       244 ~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      +++..+|.|...|....|..++.+++|. ++.||++.|+++|.+
T Consensus        75 i~~~~~~~~~~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~  118 (376)
T d1mdoa_          75 ITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP  118 (376)
T ss_dssp             EEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT
T ss_pred             EEecccccccccchhccccceeeecccccccCCCHHHHHHhcCC
Confidence            8899999999999999999999999996 689999999998864

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=97.44  E-value=0.00028  Score=64.57  Aligned_cols=100  Identities=10%  Similarity=-0.013  Sum_probs=68.7

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|..+|...++|+    .+++++|.+.           .+||++||+||..|++++++.....    +        ..+.
T Consensus        70 ~y~~~~~~~~le~----~~a~l~g~~~-----------~~~~~sGt~A~~~a~~~~~~~g~~~----~--------~~~~  122 (465)
T d1ax4a_          70 AYAGSRNYYDLKD----KAKELFNYDY-----------IIPAHQGRGAENILFPVLLKYKQKE----G--------KAKN  122 (465)
T ss_dssp             CSSSCHHHHHHHH----HHHHHHCCCE-----------EEEESSHHHHHHHHHHHHHHHHHHT----T--------CCSS
T ss_pred             hhccChHHHHHHH----HHHHHHCCCE-----------EEECCCcHHHHHHHHHHHHHHHHhc----C--------CCCC
Confidence            3556777777886    4678889864           8999999999999999998864221    1        1222


Q ss_pred             EEEecCCCcchHHHHHHhcCCceEEeeC----------CCCCCcCHHHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERAGLLGGVTIRGLPA----------DDSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~----------d~~~~md~~~L~~~i~~~~  288 (297)
                      .++.+...|.+...-....|...+.+++          +.+|.+|+++|+++|++..
T Consensus       123 ~~i~~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~  179 (465)
T d1ax4a_         123 PVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG  179 (465)
T ss_dssp             CEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHC
T ss_pred             eEEeccchhhhhHHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhc
Confidence            2334444455555556667776554432          3478999999999998754

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=97.39  E-value=0.00066  Score=60.66  Aligned_cols=103  Identities=14%  Similarity=0.050  Sum_probs=79.5

Q ss_pred             HHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCC
Q psy1678         151 ILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHP  230 (297)
Q Consensus       151 ~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~  230 (297)
                      .+...++........+|.+..+|+    .+++++|.+.           .++|+.||.|+..|+.+.-   +        
T Consensus        18 ~~~~~l~~g~~~~~~g~~v~~fE~----~~a~~~g~~~-----------~v~~~SGt~Al~lal~~l~---~--------   71 (384)
T d1b9ha_          18 GLVRALEQGQWWRMGGDEVNSFER----EFAAHHGAAH-----------ALAVTNGTHALELALQVMG---V--------   71 (384)
T ss_dssp             HHHHHHHTSCCBTTTCSHHHHHHH----HHHHHTTCSE-----------EEEESCHHHHHHHHHHHTT---C--------
T ss_pred             HHHHHHHcCCeeecCCHHHHHHHH----HHHHHHCcCe-----------EEEeCCHHHHHHHHHHHcC---C--------
Confidence            455556554333356788899997    6788888874           7899999999999987630   0        


Q ss_pred             CCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         231 DWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       231 ~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                             .+.-.|++|..++.+...+....|..++.+++++ ++.||++.+++.+..
T Consensus        72 -------~~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~  121 (384)
T d1b9ha_          72 -------GPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP  121 (384)
T ss_dssp             -------CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT
T ss_pred             -------CCCCEEEEeccccccccccccccccccccccccccccccchhhhcccccc
Confidence                   1222577899999999999999999999999985 789999999987643

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.35  E-value=3.8e-05  Score=65.97  Aligned_cols=91  Identities=14%  Similarity=0.210  Sum_probs=56.3

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|...|...++|+    ++|+++|.+.           ++||+|||+||+.|+.+++..                  .. 
T Consensus        29 ~yg~~p~~~~le~----~lA~~~G~~~-----------~~~~~sGt~A~~~al~a~~~~------------------g~-   74 (343)
T d1m6sa_          29 VYGEDPTINELER----LAAETFGKEA-----------ALFVPSGTMGNQVSIMAHTQR------------------GD-   74 (343)
T ss_dssp             GGTCCHHHHHHHH----HHHHHTTCSE-----------EEEESCHHHHHHHHHHHHCCT------------------TC-
T ss_pred             ccCCCHHHHHHHH----HHHHHHCCCe-----------EEEeCCHHHHHHHHHHHHhcc------------------CC-
Confidence            4666788888886    6789999863           899999999999999876432                  12 


Q ss_pred             EEEecCCCcchHHHHHHh---cCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERAGLL---GGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~~---lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      .+++....|++....+..   .+..++.++.+ .+.+|++.+++.|...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~  122 (343)
T d1m6sa_          75 EVILEADSHIFWYEVGAMAVLSGVMPHPVPGK-NGAMDPDDVRKAIRPR  122 (343)
T ss_dssp             EEEEETTCHHHHSSTTHHHHHTCCEEEEECEE-TTEECHHHHHHHSCCS
T ss_pred             ceeccccccceeeecccccccccceeeccccc-cCccCHHHHHHhhhhh
Confidence            233455666665443322   22233333322 3455666666655443

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=97.32  E-value=0.00055  Score=62.42  Aligned_cols=68  Identities=10%  Similarity=-0.065  Sum_probs=48.1

Q ss_pred             HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678         177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA  256 (297)
Q Consensus       177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka  256 (297)
                      -+.+|+++|.+.           .+|+++||.++..|+..+-   +               .+.-.|+++..+|.|+..+
T Consensus        72 e~~~A~~~ga~~-----------a~f~~~Gtt~~n~a~i~a~---~---------------~~gd~Vi~~~~~H~Sv~~~  122 (462)
T d1c4ka2          72 EKHAARVYNADK-----------TYFVLGGSSNANNTVTSAL---V---------------SNGDLVLFDRNNHKSVYNS  122 (462)
T ss_dssp             HHHHHHHTTCSE-----------EEEESSHHHHHHHHHHHHH---C---------------CTTCEEEEETTCCHHHHHH
T ss_pred             HHHHHHHhCCCe-----------EEEECCchHHHHHHHHHHh---c---------------CCCCeEEecccchHHHHHH
Confidence            357899999864           6788888777776665541   1               1223688999999999999


Q ss_pred             HHhcCC---ceEEeeCCCCC
Q psy1678         257 GLLGGV---TIRGLPADDSY  273 (297)
Q Consensus       257 a~~lg~---~v~~Vp~d~~~  273 (297)
                      +.+++.   .++.+++|+.|
T Consensus       123 ~~~l~~~~~~~~~~~~~~~g  142 (462)
T d1c4ka2         123 ALAMAGGRPVYLQTNRNPYG  142 (462)
T ss_dssp             HTTTTCCEEEEECEEECTTC
T ss_pred             HHHHhcCCceeeeccccccc
Confidence            887754   44556667765

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.0006  Score=62.36  Aligned_cols=103  Identities=14%  Similarity=0.059  Sum_probs=75.7

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .|..+|...++|+    .+++++|.+.           .++|++||+||..|+.+++........   .       ...-
T Consensus        69 ~Y~~~~~~~~le~----~~a~l~G~~~-----------~~~~~sGt~A~~~a~~~~~~~g~~~~~---~-------~~~~  123 (467)
T d2v1pa1          69 AFSGSRSYYALAE----SVKNIFGYQY-----------TIPTHQGRGAEQIYIPVLIKKREQEKG---L-------DRSK  123 (467)
T ss_dssp             CSSSCHHHHHHHH----HHHHHTCCSE-----------EEEECSSTTTHHHHHHHHHHHHHHHHC---C-------CTTT
T ss_pred             hhcCCchHHHHHH----HHHHHHCCCE-----------EEECCCCHHHHHHHHHHHhhccceEec---C-------CCCc
Confidence            4667788888886    4688999874           799999999999999999876433211   0       1111


Q ss_pred             EEEecCCCcchHHHHHHhcCCceEEeeCCC----------CCCcCHHHHHHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERAGLLGGVTIRGLPADD----------SYKLRGDALEAAIEEDLK  289 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~----------~~~md~~~L~~~i~~~~~  289 (297)
                      .+..+...|+.-.-++.+.|..++.++.+.          .+.+|+++|++.|++...
T Consensus       124 ~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~  181 (467)
T d2v1pa1         124 MVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP  181 (467)
T ss_dssp             CEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCG
T ss_pred             EEEEecccccccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCc
Confidence            244555566777777888899988887753          578999999999987543

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=97.00  E-value=0.0048  Score=56.61  Aligned_cols=171  Identities=12%  Similarity=0.056  Sum_probs=102.2

Q ss_pred             hhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCcccccc--CCCCCCHHHHHHHHHHHhccccccccccCchhh
Q psy1678          93 PGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAY--FPTANSYPAIVADILSDSIACIGFTWIASPACT  170 (297)
Q Consensus        93 p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~--~~s~~~~~svl~d~l~~~lN~n~~~~~~~p~~~  170 (297)
                      |++++..-+..||+  .+.-++++++.....++.....+..++|.  .+=.|.....+..|+ .+|.+.. ..+.|.+.-
T Consensus        30 P~~~~~~~~l~LP~--~sE~El~r~~~~la~kN~~~~~~~~~lG~~~~hy~P~v~~~~~~~~-TaYTPYQ-PaEiSQG~L  105 (471)
T d1wyub1          30 PKEHLREVPPRLPE--VDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNPKLHEEAARLF-ADLHPYQ-DPRTAQGAL  105 (471)
T ss_dssp             CGGGBCSSCCCCCC--CCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCCCCCHHHHHHHHTT-SSCCTTS-CGGGCHHHH
T ss_pred             CHHHHcCCCCCCCC--CCHHHHHHHHHHHHhCCCCccccccCCccccCccCcchhhhHHHHH-hccCCCC-CHHHHHHHH
Confidence            44454334457784  89999999999988776533344445562  111222222233332 1222221 013455543


Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH  250 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH  250 (297)
                      ++=-+--.|+|+|.|++-..         - -.-.|..|-..|+++|+.....+    +.      .....+++.+...|
T Consensus       106 QalfEfQtmi~eLTGMdvaN---------a-S~yDGatA~aeA~~ma~r~~~~~----~~------~~~~~~~~~~~~~~  165 (471)
T d1wyub1         106 RLMWELGEYLKALTGMDAIT---------L-EPAAGAHGELTGILIIRAYHEDR----GE------GRTRRVVLVPDSAH  165 (471)
T ss_dssp             HHHHHHHHHHHHHHTCSEEE---------C-CCSSHHHHHHHHHHHHHHHHHHT----TC------TTTCCEEEEETTSC
T ss_pred             HHHHHHHHHHHHHhCCCccc---------c-ccchHHHHHHHHHHHHHHHhhhc----cc------ccccccccCCcccc
Confidence            33233345999999998531         1 12345556778888877653322    10      01234566677777


Q ss_pred             chHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         251 SSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       251 ~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      ..........+..++.++.+..+..|.+.+...+..+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (471)
T d1wyub1         166 GSNPATASMAGYQVREIPSGPEGEVDLEALKRELGPH  202 (471)
T ss_dssp             THHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCSTT
T ss_pred             cceeeeeecccceeecccccccccccchhhhhhhhcc
Confidence            7788888888899999999999999999998876543

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00061  Score=59.86  Aligned_cols=83  Identities=11%  Similarity=0.080  Sum_probs=67.9

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      ++.+++++.+|.+++         ..++|+|+++++.+++.+-.+                  .++-+|+++.-+.....
T Consensus        60 ~Lr~~ia~~~gv~pe---------~I~it~Gs~eai~~~~~~~~~------------------pgd~~Vl~~~P~y~~~~  112 (354)
T d1fg7a_          60 AVIENYAQYAGVKPE---------QVLVSRGADEGIELLIRAFCE------------------PGKDAILYCPPTYGMYS  112 (354)
T ss_dssp             HHHHHHHHHHTSCGG---------GEEEESHHHHHHHHHHHHHCC------------------TTTCEEEECSSSCTHHH
T ss_pred             HHHHHHHHHhCCChH---------HeeeccCchHHHHHHHHHhhc------------------cccccccccccccccch
Confidence            467889999999875         599999999999888775311                  12335677778888888


Q ss_pred             HHHHhcCCceEEeeCCCCCCcCHHHHHHHH
Q psy1678         255 RAGLLGGVTIRGLPADDSYKLRGDALEAAI  284 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i  284 (297)
                      .++..+|..++.+|.++++.+|+++|++++
T Consensus       113 ~~~~~~g~~v~~~~~~~~~~~d~~~l~~~~  142 (354)
T d1fg7a_         113 VSAETIGVECRTVPTLDNWQLDLQGISDKL  142 (354)
T ss_dssp             HHHHHHTCEEEECCCCTTSCCCHHHHHTSC
T ss_pred             hhhhccCceeeccccccccccchhhhhhcc
Confidence            999999999999999999999999998765

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=96.87  E-value=0.00023  Score=63.50  Aligned_cols=77  Identities=14%  Similarity=0.018  Sum_probs=46.5

Q ss_pred             cccccCCCCCCHHHHHHHHHHHhc-cc--cc--cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678         133 KFHAYFPTANSYPAIVADILSDSI-AC--IG--FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS  207 (297)
Q Consensus       133 ~~~g~~~s~~~~~svl~d~l~~~l-N~--n~--~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT  207 (297)
                      .||++-..++.+..++ +.+..++ +.  |.  ..|........+| ++.+-+++++|.+++         .-+||+++|
T Consensus        29 iYLd~as~g~~p~~v~-~a~~~~l~~~~~~~~~~~~~~~~~~~~~e-~~R~~iA~llga~~~---------ei~~~~~~T   97 (404)
T d1qz9a_          29 IYLDGNSLGARPVAAL-ARAQAVIAEEWGNGLIRSWNSAGWRDLSE-RLGNRLATLIGARDG---------EVVVTDTTS   97 (404)
T ss_dssp             EECCTTTSCCCBTTHH-HHHHHHHHTCCCCCGGGHHHHTSGGGHHH-HHHHHHHTTTTCCTT---------SEEECSCHH
T ss_pred             EEcCCcccccCCHHHH-HHHHHHHHHHhcccCcccccchhHHHHHH-HHHHHHHHHhCCCCC---------cEEEecCch
Confidence            3666554444443433 2222222 22  22  2233333334444 689999999999875         699999999


Q ss_pred             HHHHHHHHHHHHH
Q psy1678         208 EATLVALLGAKAK  220 (297)
Q Consensus       208 ~anl~Al~~AR~~  220 (297)
                      +++...+..+...
T Consensus        98 ~~~~~~~~~~~~~  110 (404)
T d1qz9a_          98 INLFKVLSAALRV  110 (404)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhh
Confidence            9998877665443

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.87  E-value=0.0034  Score=55.31  Aligned_cols=114  Identities=16%  Similarity=0.116  Sum_probs=78.9

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +-+.+..+++.....|....+..++-+.+.+|+.+..+....      .....++|+|++++...++.+-    +     
T Consensus        43 v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~------~~~~i~~t~G~~~~l~~~~~~l----~-----  107 (388)
T d1gdea_          43 IKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEAD------PKTEIMVLLGANQAFLMGLSAF----L-----  107 (388)
T ss_dssp             HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC------TTTSEEEESSTTHHHHHHHTTT----C-----
T ss_pred             HHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCC------ChheeeeccCcchHHHHHHHHh----c-----
Confidence            445555555543333444444567777788898877665321      1135889999999988776652    1     


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIEE  286 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~~  286 (297)
                                .+.-.|++..-++.....++..+|.+++.+|+++  ++++|+++|++.+.+
T Consensus       108 ----------~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~  158 (388)
T d1gdea_         108 ----------KDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTD  158 (388)
T ss_dssp             ----------CTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCCT
T ss_pred             ----------CCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCcc
Confidence                      1112456667889999999999999999999974  569999999988753

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=96.82  E-value=0.00062  Score=60.34  Aligned_cols=92  Identities=14%  Similarity=0.002  Sum_probs=72.2

Q ss_pred             ccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCce
Q psy1678         162 TWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANL  241 (297)
Q Consensus       162 ~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~  241 (297)
                      .+..+|....+|+    .+++.+|...           .++|+.||.|+..|+.+....        .        ..+.
T Consensus        26 ~~~~G~~v~~fE~----~~~~~~g~k~-----------ai~~~Sgt~Al~~al~al~~~--------~--------~~~~   74 (371)
T d2fnua1          26 QLTQGKRSLLFEE----ALCEFLGVKH-----------ALVFNSATSALLTLYRNFSEF--------S--------ADRN   74 (371)
T ss_dssp             CCSSSHHHHHHHH----HHHHHHTCSE-----------EEEESCHHHHHHHHHHHSSCC--------C--------TTSC
T ss_pred             CccCCHHHHHHHH----HHHHHHCcCe-----------EEEEecHHHHHHHHHHHhccc--------C--------CCCC
Confidence            3456888899997    6788888863           788999999999988874211        0        1233


Q ss_pred             EEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHH
Q psy1678         242 VGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAI  284 (297)
Q Consensus       242 ~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i  284 (297)
                      .|++|..++.+..-|....|..++-|.+|+++.++++.+++.+
T Consensus        75 eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~~~~~~~~~~~~~~  117 (371)
T d2fnua1          75 EIITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLI  117 (371)
T ss_dssp             EEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGC
T ss_pred             eeecccccccccceeeeccCcccccccccccccccchhhhhhc
Confidence            5778999999999999999999999999998888887776554

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=96.51  E-value=0.0069  Score=54.02  Aligned_cols=122  Identities=16%  Similarity=0.038  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHhccccc---cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         145 PAIVADILSDSIACIG---FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       145 ~svl~d~l~~~lN~n~---~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      ...+.+.+..++....   ..|....+...+-+.+.+|+.+..|.+...      ...-++|+|+++++..++.+-    
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~------~~~I~it~G~~~al~~~~~~~----  124 (420)
T d1vp4a_          55 RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLD------EDNLIFTVGSQQALDLIGKLF----  124 (420)
T ss_dssp             HHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCC------GGGEEEEEHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCC------HHHeEeccchhhhHHHHHHhh----
Confidence            3445555555554322   234444455677788999999998875210      125899999999988776652    


Q ss_pred             HHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCC
Q psy1678         222 MQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGK  292 (297)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~  292 (297)
                      .      +         +.-.|++.+-++.....++...|..++.||.|+. .+|++.|+..+.+....+.
T Consensus       125 ~------~---------~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~  179 (420)
T d1vp4a_         125 L------D---------DESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD-GMDLNVLERKLSEFDKNGK  179 (420)
T ss_dssp             C------C---------TTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-EECHHHHHHHHHHHHHTTC
T ss_pred             h------c---------cccccccccccccchhHHHHHHhhhccccccccc-ccccchhhhhhhhhHHHhh
Confidence            1      1         1124566778888999999999999999999875 5899999999887665543

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.012  Score=52.54  Aligned_cols=83  Identities=14%  Similarity=0.037  Sum_probs=64.9

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVER  255 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~K  255 (297)
                      +-+.+++++|.+.           .+++++|+++|..++.+..                   .+.-+|++.+.+|.|+..
T Consensus        95 lE~~lA~~~g~e~-----------al~~~SG~~An~~~i~~l~-------------------~~~d~i~~d~~~h~s~~~  144 (401)
T d1fc4a_          95 LEQKLAAFLGMED-----------AILYSSCFDANGGLFETLL-------------------GAEDAIISDALNHASIID  144 (401)
T ss_dssp             HHHHHHHHHTCSE-----------EEEESCHHHHHHTTHHHHC-------------------CTTCEEEEETTCCHHHHH
T ss_pred             HHHHHHHhhcCCc-----------eEEecchhhhhHHHHHHhc-------------------CCCcEEEeCCcchHHHHc
Confidence            3445678888864           7899999999999886531                   123468889999999999


Q ss_pred             HHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHHHCCCc
Q psy1678         256 AGLLGGVTIRGLPADDSYKLRGDALEAAIEEDLKKGKI  293 (297)
Q Consensus       256 aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~~~G~~  293 (297)
                      ++.+.+.++++++     ..|.++|++.+++..+++..
T Consensus       145 G~~~~~a~~~~~~-----~~d~~~le~~~~~~~~~~~~  177 (401)
T d1fc4a_         145 GVRLCKAKRYRYA-----NNDMQELEARLKEAREAGAR  177 (401)
T ss_dssp             HHHTSCSEEEEEC-----TTCHHHHHHHHHHHHHTTCS
T ss_pred             cccccCceEEEEc-----CCChHHHHHHHHHhhhcccC
Confidence            9999888888775     44789999999888877654

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0028  Score=55.82  Aligned_cols=96  Identities=11%  Similarity=0.070  Sum_probs=68.4

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      .++-+..+-.++.+.|++++|.++++        .-+||+|||+++..++...    +.               +.-.++
T Consensus        46 Rs~~f~~i~~ea~~~l~~llg~~~~~--------~ii~~gsgT~a~~~~i~~l----~~---------------~~~~~~   98 (388)
T d1h0ca_          46 MSKDMYQIMDEIKEGIQYVFQTRNPL--------TLVISGSGHCALEAALVNV----LE---------------PGDSFL   98 (388)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCCCSE--------EEEESSCHHHHHHHHHHHH----CC---------------SSCCEE
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCc--------EEEEcCcHHHHHHHHHHHh----hc---------------cCCcee
Confidence            46667788888999999999998653        4789999999988777753    11               111244


Q ss_pred             ecCCCcchHHHH--HHhcCCceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         245 CSDQAHSSVERA--GLLGGVTIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       245 ~s~~aH~Si~Ka--a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      +....|++..-+  +...+..++.++.+..+..|.+.+++.+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (388)
T d1h0ca_          99 VGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQH  143 (388)
T ss_dssp             ECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHH
T ss_pred             eecccceeeeeccccccccccccccccCCccccchHHHHHHhccC
Confidence            455777776443  3345677888888888999999988887653

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.36  E-value=0.0081  Score=52.65  Aligned_cols=85  Identities=13%  Similarity=0.021  Sum_probs=64.9

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      .+|....+|+    .+++.+|...           .++|+.||.|++.||.+..   +               .+.-.|+
T Consensus        19 ~G~~~~~fE~----~~~~~~~~~~-----------~~~~~SgT~Al~lal~~l~---~---------------~~gdeVi   65 (374)
T d1o69a_          19 LGEFVNRFEQ----SVKDYSKSEN-----------ALALNSATAALHLALRVAG---V---------------KQDDIVL   65 (374)
T ss_dssp             TTHHHHHHHH----HHHHHHCCSE-----------EEEESCHHHHHHHHHHHTT---C---------------CTTCEEE
T ss_pred             CCHHHHHHHH----HHHHHHCcCe-----------EEEeCCHHHHHHHHHHHcC---C---------------CCcCEEE
Confidence            3788899998    4567778763           8899999999999998641   0               1222577


Q ss_pred             ecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHH
Q psy1678         245 CSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEA  282 (297)
Q Consensus       245 ~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~  282 (297)
                      +|..++.+...+....|..++-|.+|++..++......
T Consensus        66 ~p~~t~~a~~~~~~~~g~~pv~~Di~~~~~~~~~~~~~  103 (374)
T d1o69a_          66 ASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKL  103 (374)
T ss_dssp             EESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHH
T ss_pred             eCCcchHhhHHHHhhccceeEecccccccccccccccc
Confidence            89999999999999999999999999765444444333

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=96.35  E-value=0.016  Score=51.95  Aligned_cols=103  Identities=16%  Similarity=0.154  Sum_probs=73.9

Q ss_pred             hhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCC
Q psy1678         169 CTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQ  248 (297)
Q Consensus       169 ~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~  248 (297)
                      ..++=+.+.+|+.+..|..-..     ....-++|+|+|+++..++.+-    ..              ... .|+++.-
T Consensus        86 ~~~LR~aiA~~l~~~~~~~~~~-----~pe~I~it~G~~~al~~~~~~l----~~--------------pGd-~Vlv~~P  141 (431)
T d1m7ya_          86 LPAFKKAMVDFMAEIRGNKVTF-----DPNHLVLTAGATSANETFIFCL----AD--------------PGE-AVLIPTP  141 (431)
T ss_dssp             CHHHHHHHHHHHHHHTTTSSCC-----CGGGEEEEEHHHHHHHHHHHHH----CC--------------TTC-EEEEEES
T ss_pred             cHHHHHHHHHHHHHHhCCCCCC-----CcceEEECCCHHHHHHHHHHHh----cC--------------CCC-EEEEeCC
Confidence            3456667888999988743110     0125889999999998877763    10              112 4566777


Q ss_pred             CcchHHHHHHh-cCCceEEeeCCC--CCCcCHHHHHHHHHHHHHCCCccE
Q psy1678         249 AHSSVERAGLL-GGVTIRGLPADD--SYKLRGDALEAAIEEDLKKGKIPF  295 (297)
Q Consensus       249 aH~Si~Kaa~~-lg~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G~~Pf  295 (297)
                      .+......+.+ .|+.++.|++++  .+.+|++++++.+++..+.+..+.
T Consensus       142 ~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  191 (431)
T d1m7ya_         142 YYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVK  191 (431)
T ss_dssp             CCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEE
T ss_pred             CchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcce
Confidence            88888888875 578999999875  468999999999999888876543

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=96.28  E-value=0.017  Score=51.67  Aligned_cols=103  Identities=15%  Similarity=0.138  Sum_probs=73.9

Q ss_pred             hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecC
Q psy1678         168 ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSD  247 (297)
Q Consensus       168 ~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~  247 (297)
                      +..++-+.+.+|+.+..|..-..     ....-++|+|+|+++..++.+-    .      +         +.-.|+++.
T Consensus        84 G~~~LR~aiA~~l~~~~~~~~~~-----~~e~Ivit~G~~~al~~~~~~l----~------~---------~Gd~Vlv~~  139 (428)
T d1iaya_          84 GLPEFRKAIAKFMEKTRGGRVRF-----DPERVVMAGGATGANETIIFCL----A------D---------PGDAFLVPS  139 (428)
T ss_dssp             CCHHHHHHHHHHHHHHTTTCSCC-----CTTSCEEEEHHHHHHHHHHHHH----C------C---------TTCEEEEES
T ss_pred             chHHHHHHHHHHHHHHhCCCCCC-----ChhhEEEcCCHHHHHHHHHHHh----C------C---------CCCEEEEcc
Confidence            34567777889999998753210     0125899999999998877652    1      0         112456677


Q ss_pred             CCcchHHHHHHhc-CCceEEeeCCC--CCCcCHHHHHHHHHHHHHCCCcc
Q psy1678         248 QAHSSVERAGLLG-GVTIRGLPADD--SYKLRGDALEAAIEEDLKKGKIP  294 (297)
Q Consensus       248 ~aH~Si~Kaa~~l-g~~v~~Vp~d~--~~~md~~~L~~~i~~~~~~G~~P  294 (297)
                      -++.++...+.+. |++++.|+++.  ++.+|+++++.+++.....+..+
T Consensus       140 P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  189 (428)
T d1iaya_         140 PYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKV  189 (428)
T ss_dssp             SCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCE
T ss_pred             CCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCc
Confidence            7888888888764 88999999874  67999999999998877666543

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.24  E-value=0.03  Score=49.94  Aligned_cols=126  Identities=13%  Similarity=0.072  Sum_probs=80.4

Q ss_pred             CCCCccccccCCCCCCHHHHHHHHHHHhccccccccccCc---hhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcC
Q psy1678         128 HWHSPKFHAYFPTANSYPAIVADILSDSIACIGFTWIASP---ACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQG  204 (297)
Q Consensus       128 ~~~~p~~~g~~~s~~~~~svl~d~l~~~lN~n~~~~~~~p---~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~ts  204 (297)
                      .|++-.|+|.-..+ .....+.+.+..    .+.....|+   +...+..++=+.+++++|.+.           .++.+
T Consensus        49 ~FsSndYLGL~~~p-~v~~a~~~al~~----yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~-----------all~~  112 (396)
T d2bwna1          49 VWCGNDYLGMGQHP-VVLAAMHEALEA----VGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEA-----------ALVFS  112 (396)
T ss_dssp             ECSCSCTTSGGGCH-HHHHHHHHHHHH----HCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSE-----------EEEES
T ss_pred             EEEcccccCcCCCH-HHHHHHHHHHHH----hCCCccccccccCCchHHHHHHHHHHHHhCCCc-----------eeeee
Confidence            46666777764332 222333333332    222222221   223444455568899999975           77788


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHH
Q psy1678         205 TASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKLRGDALEAAI  284 (297)
Q Consensus       205 GGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i  284 (297)
                      .|..+|+..+.+--..                 .+..+|+.-+..|.|+..++++-+.++++.+.+     |.++|++.+
T Consensus       113 sG~~An~~~i~~l~~~-----------------~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-----d~~~l~~l~  170 (396)
T d2bwna1         113 SAYNANDATLSTLRVL-----------------FPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-----DVAHLRELI  170 (396)
T ss_dssp             CHHHHHHHHHHHHHHH-----------------STTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-----CHHHHHHHH
T ss_pred             cchHHHHHHHHHHhcc-----------------cCCCceeehhhhhhccchhhhccccCceEeecc-----hHHHhhhHH
Confidence            8999998877653211                 123478899999999999999999998887654     577888887


Q ss_pred             HHHHHCC
Q psy1678         285 EEDLKKG  291 (297)
Q Consensus       285 ~~~~~~G  291 (297)
                      +....++
T Consensus       171 ~~~~~~~  177 (396)
T d2bwna1         171 AADDPAA  177 (396)
T ss_dssp             HHSCTTS
T ss_pred             hhhcccC
Confidence            7654444

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=96.23  E-value=0.015  Score=51.34  Aligned_cols=112  Identities=11%  Similarity=0.031  Sum_probs=77.2

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +-+.+...+......|....+..++=+.+.+|+.+..|.+-+.       ..-++|+|+++++..++.+.    ..    
T Consensus        48 v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~-------~~i~it~G~~~al~~~~~~~----~~----  112 (388)
T d1j32a_          48 IVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA-------DNILVTNGGKQSIFNLMLAM----IE----  112 (388)
T ss_dssp             HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-------GGEEEESHHHHHHHHHHHHH----CC----
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCC-------ceEEEcCCHHHHHHHHHHHH----hC----
Confidence            3445555544333334444444556667788999888875321       25889999999998876542    11    


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE  285 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~  285 (297)
                                 +.-.|++.+-+.+.....+...|..++.+|.+.  ++.+|+++|+++++
T Consensus       113 -----------~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~  161 (388)
T d1j32a_         113 -----------PGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT  161 (388)
T ss_dssp             -----------TTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC
T ss_pred             -----------CCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCC
Confidence                       112466777888899999999999999999864  56899999998875

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=96.16  E-value=0.011  Score=52.02  Aligned_cols=112  Identities=10%  Similarity=0.035  Sum_probs=78.1

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +-+.+..++......|....+...+-+.+.+|+.+..|++-+.       ..-++|+|+++++..++.+-    ..    
T Consensus        49 i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~-------~~i~it~G~~~al~~~~~~l----~~----  113 (382)
T d1b5pa_          49 VKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTP-------EETIVTVGGSQALFNLFQAI----LD----  113 (382)
T ss_dssp             HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCG-------GGEEEESHHHHHHHHHHHHH----CC----
T ss_pred             HHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhccccccc-------ccceecCCHHHHHHHHHHHh----CC----
Confidence            3445555555444445555556677778889999888765221       25889999999887766653    11    


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE  285 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~  285 (297)
                                ..+ .|++..-+......++...|..++.||.++  .+.+|++.|++++.
T Consensus       114 ----------~gd-~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~  162 (382)
T d1b5pa_         114 ----------PGD-EVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT  162 (382)
T ss_dssp             ----------TTC-EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC
T ss_pred             ----------CCC-EEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCC
Confidence                      112 456666788888899999999999999874  56889999988764

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.021  Score=49.46  Aligned_cols=91  Identities=11%  Similarity=-0.019  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      .++.+.+.+|+.+.+|++-+.       ..-++|+|+++++..++.+.    ..               +.-.|++.+-.
T Consensus        38 ~~lr~~ia~~~~~~~g~~~~~-------~~i~it~G~~~~l~~~~~~l----~~---------------~gd~Vlv~~P~   91 (361)
T d1d2fa_          38 DEFLAAIAHWFSTQHYTAIDS-------QTVVYGPSVIYMVSELIRQW----SE---------------TGEGVVIHTPA   91 (361)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCG-------GGEEEESCHHHHHHHHHHHS----SC---------------TTCEEEEEESC
T ss_pred             HHHHHHHHHHHHHHhCCCCCc-------ceEEEeCCHHHHHHHHhhhc----cc---------------ccccccccccc
Confidence            356667888999999986321       25899999999976655542    10               11146667778


Q ss_pred             cchHHHHHHhcCCceEEeeCC---CCCCcCHHHHHHHHHH
Q psy1678         250 HSSVERAGLLGGVTIRGLPAD---DSYKLRGDALEAAIEE  286 (297)
Q Consensus       250 H~Si~Kaa~~lg~~v~~Vp~d---~~~~md~~~L~~~i~~  286 (297)
                      |.....++...|.+++.|+.+   +++.+|++.+++.+.+
T Consensus        92 y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~  131 (361)
T d1d2fa_          92 YDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK  131 (361)
T ss_dssp             CHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS
T ss_pred             ccchhHHHHhhcceEEeecccccccccccccccchhhccc
Confidence            889999999999999988875   3457999998888754

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.042  Score=48.08  Aligned_cols=115  Identities=13%  Similarity=0.141  Sum_probs=81.2

Q ss_pred             HHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         147 IVADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       147 vl~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      .+-+.+...++.....|....+..++=+.+.+|+.+..|.+-..      ...-++|+|+++++..++.+.-+       
T Consensus        43 ~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~------~~~I~vt~G~~~al~~~~~~l~~-------  109 (382)
T d1u08a_          43 YLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDA------DSDITVTAGATEALYAAITALVR-------  109 (382)
T ss_dssp             HHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCT------TTTEEEESSHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCC------CceEEeccchHHHHHHHHhhccc-------
Confidence            45566666666554456555566677777889999999976321      12478999999999888765311       


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                                  +.-.|++.+-..+....++...|..+..+++++ .+.+|.++|++.+.+
T Consensus       110 ------------~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~  158 (382)
T d1u08a_         110 ------------NGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSE  158 (382)
T ss_dssp             ------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCT
T ss_pred             ------------ccceEEEecccccchhhhhhhccccceecccccccccCCHHHHhhhhcc
Confidence                        112455666788888889999998888888874 678899988876653

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.031  Score=49.41  Aligned_cols=83  Identities=11%  Similarity=0.043  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCc
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAH  250 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH  250 (297)
                      .+-.++-+.|++++|.+.           .++++.|+++|+.++.+..                   .+.-.|++-+..|
T Consensus        83 ~~~~~lE~~LA~~~g~e~-----------al~~~SG~~an~~~i~al~-------------------~~~d~v~~d~~~h  132 (383)
T d1bs0a_          83 VVHQALEEELAEWLGYSR-----------ALLFISGFAANQAVIAAMM-------------------AKEDRIAADRLSH  132 (383)
T ss_dssp             HHHHHHHHHHHHHHTCSE-----------EEEESCHHHHHHHHHHHHC-------------------CTTCEEEEETTCC
T ss_pred             hHHHHHHHHHHHhcCCCc-----------eEEecccchhhHHHHHhhc-------------------CCCceEEeecccc
Confidence            333444457889999874           7888999999999886631                   1334688899999


Q ss_pred             chHHHHHHhcCCceEEeeCCCCCCcCHHHHHHHHHHHH
Q psy1678         251 SSVERAGLLGGVTIRGLPADDSYKLRGDALEAAIEEDL  288 (297)
Q Consensus       251 ~Si~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~i~~~~  288 (297)
                      .|+..+++..+-.++..+-     -|+++|++.+.+..
T Consensus       133 ~si~~g~~~~~~~~~~~~h-----nd~~~le~~l~~~~  165 (383)
T d1bs0a_         133 ASLLEAASLSPSQLRRFAH-----NDVTHLARLLASPC  165 (383)
T ss_dssp             HHHHHHHHTSSSEEEEECT-----TCHHHHHHHHHSCC
T ss_pred             HHHhhccccCCCcceEecc-----hHHHHHHHHhcccC
Confidence            9999999998888887764     57888988887543

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=95.63  E-value=0.022  Score=51.70  Aligned_cols=93  Identities=13%  Similarity=-0.018  Sum_probs=61.8

Q ss_pred             cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCc
Q psy1678         161 FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIAN  240 (297)
Q Consensus       161 ~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~  240 (297)
                      ..|..+|....+|+.    +++++|...           +++|+.||+||..++.+..    .               +.
T Consensus        69 d~Y~~dpt~~~lE~~----~a~l~G~e~-----------al~~~SGt~An~~a~~~l~----~---------------~G  114 (456)
T d1c7ga_          69 EAYAGSENFYHLEKT----VKELFGFKH-----------IVPTHQGRGAENLLSQLAI----K---------------PG  114 (456)
T ss_dssp             CCSSSCHHHHHHHHH----HHHHHCCSE-----------EEEESSHHHHHHHHHHHHC----C---------------TT
T ss_pred             hhccCCchHHHHHHH----HHHHhCCCe-----------EEECCCHHHHHHHHHHHhc----C---------------CC
Confidence            357789999999974    578899974           8999999999999887631    1               11


Q ss_pred             eEEEecCCCcchHHHH-HHhcCCceEEeeC----------CCCCCcCHHHHHHHHHHHHH
Q psy1678         241 LVGYCSDQAHSSVERA-GLLGGVTIRGLPA----------DDSYKLRGDALEAAIEEDLK  289 (297)
Q Consensus       241 ~~i~~s~~aH~Si~Ka-a~~lg~~v~~Vp~----------d~~~~md~~~L~~~i~~~~~  289 (297)
                      -.|++.  .|+--..+ ....|...+.+.+          ..+|.+|+++|++.|++...
T Consensus       115 d~Vi~~--~~f~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~  172 (456)
T d1c7ga_         115 QYVAGN--MYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGA  172 (456)
T ss_dssp             EEEEES--SCCHHHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG
T ss_pred             CeEecC--cchHHHHHHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCC
Confidence            245554  34322222 2234544443332          23689999999999987643

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=95.53  E-value=0.048  Score=47.81  Aligned_cols=102  Identities=12%  Similarity=0.042  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhccccc---cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         145 PAIVADILSDSIACIG---FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       145 ~svl~d~l~~~lN~n~---~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      ...+.+.+...+....   ..|....+..++.+.+.+|+.+..|++-+.       ..-++|+|+++++..++.+..+  
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~-------~~I~it~G~~~al~~~~~~l~~--  116 (403)
T d1wsta1          46 VETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSK-------VEIMTVAGSQQALDLIGRVFLN--  116 (403)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTT-------CEEEEESSHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCh-------HHeeecccchHHHHHHHHHHhh--
Confidence            3445555555543322   234545556678888999999998875321       3589999999999887776311  


Q ss_pred             HHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCC
Q psy1678         222 MQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDS  272 (297)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~  272 (297)
                                       +.-.|++.+-+++.....+..+|.+++.||.+++
T Consensus       117 -----------------~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~  150 (403)
T d1wsta1         117 -----------------PGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDK  150 (403)
T ss_dssp             -----------------TTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT
T ss_pred             -----------------cCCccccCCCcchhhhHHHhhccccceeEeeccc
Confidence                             1124556778899999999999999988887754

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=95.42  E-value=0.0093  Score=52.01  Aligned_cols=81  Identities=21%  Similarity=0.201  Sum_probs=59.1

Q ss_pred             HHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHHHH
Q psy1678         177 LDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERA  256 (297)
Q Consensus       177 ~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Ka  256 (297)
                      .+.+++.++.+++         .-++|+|||+++..++.+.    ..               +.-.|+++.-.|......
T Consensus        67 r~aiA~~~~~~~~---------~Iiit~G~~~al~~~~~~l----~~---------------~~d~v~~~~p~~~~~~~~  118 (368)
T d1v2da_          67 REALAEEFAVEPE---------SVVVTSGATEALYVLLQSL----VG---------------PGDEVVVLEPFFDVYLPD  118 (368)
T ss_dssp             HHHHHHHHTSCGG---------GEEEESSHHHHHHHHHHHH----CC---------------TTCEEEEEESCCTTHHHH
T ss_pred             HHHHHhhcccCCc---------ceeeccchHHHHHHHhhcc----cc---------------ccccccccCCcchhhhhH
Confidence            3455666788764         5899999999998887653    11               112466677788899999


Q ss_pred             HHhcCCceEEeeCC---CCCCcCHHHHHHHHH
Q psy1678         257 GLLGGVTIRGLPAD---DSYKLRGDALEAAIE  285 (297)
Q Consensus       257 a~~lg~~v~~Vp~d---~~~~md~~~L~~~i~  285 (297)
                      +...|.+++.++++   +.+.+|++.|+++++
T Consensus       119 ~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~  150 (368)
T d1v2da_         119 AFLAGAKARLVRLDLTPEGFRLDLSALEKALT  150 (368)
T ss_dssp             HHHTTCEEEEEECEEETTEEECCHHHHHTTCC
T ss_pred             HHhcCCccceeccccccccccCCHHHHHHhhc
Confidence            99999988888774   456788887776653

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.14  E-value=0.077  Score=46.70  Aligned_cols=103  Identities=12%  Similarity=0.114  Sum_probs=67.7

Q ss_pred             cccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceE
Q psy1678         163 WIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLV  242 (297)
Q Consensus       163 ~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~  242 (297)
                      |....+..++=+.+.+|+.+.++...... .....-.-++|+|+++++..++.+-    ..               +.-.
T Consensus        68 Y~~~~G~~~LReaia~~~~~~~~~~~~~~-~~~~~~~I~it~G~~~al~~~~~~l----~~---------------~Gd~  127 (412)
T d1bw0a_          68 YFPTVGSPEAREAVATWWRNSFVHKEELK-STIVKDNVVLCSGGSHGILMAITAI----CD---------------AGDY  127 (412)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHCCSTTTG-GGCCGGGEEEESHHHHHHHHHHHHH----CC---------------TTCE
T ss_pred             CCCCcCCHHHHHHHHHHHHHhcCcccccC-CCCCCCeEEEecccccchhhhhhhh----hc---------------cccc
Confidence            43333344555567888888765432100 0001125899999999998877652    11               1124


Q ss_pred             EEecCCCcchHHHHHHhcCCceEEeeCCC--CCCcCHHHHHHHHH
Q psy1678         243 GYCSDQAHSSVERAGLLGGVTIRGLPADD--SYKLRGDALEAAIE  285 (297)
Q Consensus       243 i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~--~~~md~~~L~~~i~  285 (297)
                      |++++-+.......+...|++++.+|+++  ++..+++.|++.+.
T Consensus       128 Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~  172 (412)
T d1bw0a_         128 ALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD  172 (412)
T ss_dssp             EEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC
T ss_pred             eeeeeccchhhhhhhhccCccccccccccccccchhhHHHHhhhh
Confidence            55677788888899999999999999874  56788888877653

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.10  E-value=0.039  Score=48.64  Aligned_cols=112  Identities=8%  Similarity=-0.053  Sum_probs=76.8

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +-+.+...++.....|....+..++-+.+.+|+.+..|++-+.       ..-++|+|+++++..++.+..+        
T Consensus        51 i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-------~~i~i~~G~~~~~~~~~~~~~~--------  115 (395)
T d1xi9a_          51 MKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITP-------DDVRVTAAVTEALQLIFGALLD--------  115 (395)
T ss_dssp             HHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG-------GGEEEESHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccc-------cccccccccchhhhhhhhhhcC--------
Confidence            3444554444332234444455667778899999998886431       2477899999988776654211        


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIE  285 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~  285 (297)
                                 +.-.|++.+-+.......+...|..++.||.+  +++.+|.++|++.+.
T Consensus       116 -----------~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~  164 (395)
T d1xi9a_         116 -----------PGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT  164 (395)
T ss_dssp             -----------TTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC
T ss_pred             -----------CCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhc
Confidence                       11145566678888899999999999999865  467899999988774

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=95.03  E-value=0.068  Score=46.85  Aligned_cols=107  Identities=9%  Similarity=-0.083  Sum_probs=71.2

Q ss_pred             HHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhC
Q psy1678         150 DILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAH  229 (297)
Q Consensus       150 d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~  229 (297)
                      +.+...++.+...|..  ...++.+.+.+|+.+..|++-+.       -.-++|+|+++++..++.+.-+          
T Consensus        51 ~al~~~~~~~~~~Y~~--g~~~Lr~aia~~~~~~~g~~~~~-------~~I~vt~G~~~al~~~~~~~~~----------  111 (394)
T d1c7na_          51 EGLKKYLDETVLGYTG--PTEEYKKTVKKWMKDRHQWDIQT-------DWIINTAGVVPAVFNAVREFTK----------  111 (394)
T ss_dssp             HHHHHHHHHCCCSSBC--CCHHHHHHHHHHHHHHHCCCCCG-------GGEEEESSHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHHhCCCcCCCC--CCHHHHHHHHHHHHHhcCCCCCC-------cceEeeccchhhhhhhhccccc----------
Confidence            4444444433333422  23578889999999998886321       2589999999999988876311          


Q ss_pred             CCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC---CCCCcCHHHHHHHH
Q psy1678         230 PDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD---DSYKLRGDALEAAI  284 (297)
Q Consensus       230 ~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d---~~~~md~~~L~~~i  284 (297)
                               +.-.|++..-..+....+....|...+.++.+   ..+.+|.+.++..+
T Consensus       112 ---------pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~  160 (394)
T d1c7na_         112 ---------PGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLS  160 (394)
T ss_dssp             ---------TTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHH
T ss_pred             ---------cccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhh
Confidence                     11235556678888888888888877777753   34567777766655

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=94.77  E-value=0.25  Score=44.31  Aligned_cols=149  Identities=14%  Similarity=0.101  Sum_probs=89.0

Q ss_pred             hhhhhccCCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCccccccCCCCCCHHHHHHHHHH--Hhcccc-ccccccCchh
Q psy1678          93 PGYLRPLIPETAPDTPDTWQEVMSDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADILS--DSIACI-GFTWIASPAC  169 (297)
Q Consensus        93 p~~l~~~~~~~lP~~g~~~~~il~~l~~~~~~~~~~~~~p~~~g~~~s~~~~~svl~d~l~--~~lN~n-~~~~~~~p~~  169 (297)
                      |+.++ .-+..|| ++.+..++++.+.+...++..- .+ .|.|-=++.--.++++..++.  .+++.. ..-.+.+.+.
T Consensus        31 P~~~~-~~~~~lp-~~~sE~e~~r~~~~ls~kN~~~-~~-~fig~G~~~~~~p~~i~~~~~~~~~~t~ytPyqpE~sQG~  106 (437)
T d1wyua1          31 PKEIL-SPPIDLP-EPLPEWKVLEELRRLAAQNLPA-HK-AFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGV  106 (437)
T ss_dssp             CGGGS-SCCCCCC-CCCCHHHHHHHHHHHHHTSCCC-TT-CCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHH
T ss_pred             cHHHh-cCCCCCC-CCCCHHHHHHHHHHHHhCCCCc-Cc-cccCcccCCceeCHHHHHHHhChhhhhhCCCcchHHHHHH
Confidence            55553 2245667 3578999999999987665321 11 133321222222344443332  234332 2334666666


Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCC
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQA  249 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~a  249 (297)
                      -++=.+.-.||+++.|++...          .-.-.|+.+-+.|++.+|....                .+ .++.++..
T Consensus       107 Lq~l~e~q~~l~eltGmd~~n----------~s~~~ga~a~~~~~~~~~~~~~----------------~~-~~~v~~~~  159 (437)
T d1wyua1         107 LQATFEYQTMIAELAGLEIAN----------ASMYDGATALAEGVLLALRETG----------------RM-GVLVSQGV  159 (437)
T ss_dssp             HHHHHHHHHHHHHHHTSSEEC----------SCBSSHHHHHHHHHHHHHHHHT----------------CC-EEEEETTS
T ss_pred             HHHHHHHHHHHHHhhCCCccc----------cCchHHHHHHHHHHHHHHhhhc----------------cc-cccccccc
Confidence            666667778999999998631          1123577788999998876421                11 34567788


Q ss_pred             cchH----HHHHHhcCCceEEeeCCCC
Q psy1678         250 HSSV----ERAGLLGGVTIRGLPADDS  272 (297)
Q Consensus       250 H~Si----~Kaa~~lg~~v~~Vp~d~~  272 (297)
                      |.+-    .-.|...|++++.||.++.
T Consensus       160 ~p~~~~v~~t~a~~~g~~vv~v~~~~~  186 (437)
T d1wyua1         160 HPEYRAVLRAYLEAVGAKLLTLPLEGG  186 (437)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECCBTT
T ss_pred             ChHHhhhhhhhcccceeeEEeeecccc
Confidence            8654    3345678999999998654

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=94.11  E-value=0.12  Score=44.55  Aligned_cols=94  Identities=12%  Similarity=0.009  Sum_probs=63.7

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      ++-+.++=.++.+.|++++|.++.        ..-+||+|||+++-.++.....                  ..+ .+++
T Consensus        45 ~~ef~~i~~~~r~~L~~ll~~~~~--------~~i~~~gsgT~a~ea~~~~l~~------------------~~~-~vl~   97 (388)
T d2ch1a1          45 HAELFRTMDEVKDGLRYIFQTENR--------ATMCVSGSAHAGMEAMLSNLLE------------------EGD-RVLI   97 (388)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCCS--------CEEEESSCHHHHHHHHHHHHCC------------------TTC-EEEE
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCC--------eEEEEcCcHHHHHHHHHHHhcc------------------ccc-cccc
Confidence            556666667899999999998653        2356677899988765554311                  012 2444


Q ss_pred             cCCCcchHHHH--HHhcCCceEEeeCCCCCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSSVERA--GLLGGVTIRGLPADDSYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~Si~Ka--a~~lg~~v~~Vp~d~~~~md~~~L~~~i~~  286 (297)
                      ..+.|++..-+  +...+..++.++.+.....+.+..++.+..
T Consensus        98 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (388)
T d2ch1a1          98 AVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIEL  140 (388)
T ss_dssp             EESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHH
T ss_pred             cccccccccchhhhhhhcccccccccccccccchhhhhhhhcc
Confidence            45677776543  445678888888888888888887777644

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=94.07  E-value=0.24  Score=42.29  Aligned_cols=94  Identities=15%  Similarity=0.069  Sum_probs=59.9

Q ss_pred             cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEE
Q psy1678         165 ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGY  244 (297)
Q Consensus       165 ~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (297)
                      .++.+..+=.++.+.|++++|.|+..        .-+||+|||+++..++...    ..               +.-.++
T Consensus        45 r~~ef~~i~~~~r~~l~~ll~~~~~~--------~i~~~g~gT~~~~~~~~~~----~~---------------~~~~~~   97 (377)
T d1vjoa_          45 LDPAFLALMDEIQSLLRYVWQTENPL--------TIAVSGTGTAAMEATIANA----VE---------------PGDVVL   97 (377)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHTCCCSC--------EEEESSCHHHHHHHHHHHH----CC---------------TTCEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCCe--------EEEEcCcHHHHHHHHHHhc----cc---------------cccccc
Confidence            35667777778999999999998642        4677888999988776553    11               111233


Q ss_pred             ecCCCcchHHH--HHHhcCCceEEeeCCCCCCcCHHHHHHHHH
Q psy1678         245 CSDQAHSSVER--AGLLGGVTIRGLPADDSYKLRGDALEAAIE  285 (297)
Q Consensus       245 ~s~~aH~Si~K--aa~~lg~~v~~Vp~d~~~~md~~~L~~~i~  285 (297)
                      +....|++...  .+...+.....+........+.+..+....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (377)
T d1vjoa_          98 IGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALE  140 (377)
T ss_dssp             EEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH
T ss_pred             eeeechhhhhhhhhhhhhcccccccccCCCCcccchhhhhhhh
Confidence            44456665533  334455666666666666666666655544

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.93  E-value=0.035  Score=48.54  Aligned_cols=65  Identities=18%  Similarity=0.146  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEec-CCCc
Q psy1678         172 LEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCS-DQAH  250 (297)
Q Consensus       172 iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s-~~aH  250 (297)
                      .+.++.+..++.++..+.        ...++|+||+++|+.++.+- .                  .+.-+++.+ ..+|
T Consensus        51 ~~~~l~~~~~~~~~~~~~--------e~~~~~~~~~~a~~~~l~al-~------------------~~~~vi~~~~~~~~  103 (366)
T d2aeua1          51 FAEKVNEYGLKHLGGDEN--------DKCVGFNRTSSAILATILAL-K------------------PKKVIHYLPELPGH  103 (366)
T ss_dssp             HHHHHHHHHHHHHTCCTT--------EEEEEESSHHHHHHHHHHHH-C------------------CSEEEEECSSSSCC
T ss_pred             hHHHHHHHHHHHccCCCc--------cEEEEeCCHHHHHHHHHHHh-C------------------CCCEEEEecCCCcc
Confidence            444555566676776543        24888999999998877652 1                  123344544 5799


Q ss_pred             chHHHHHHhcCCc
Q psy1678         251 SSVERAGLLGGVT  263 (297)
Q Consensus       251 ~Si~Kaa~~lg~~  263 (297)
                      .|+..++++.|.+
T Consensus       104 ~~~~~~~~l~g~~  116 (366)
T d2aeua1         104 PSIERSCKIVNAK  116 (366)
T ss_dssp             THHHHHHHHTTCE
T ss_pred             hhHHHHHHhcCCe
Confidence            9999999998874

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=93.67  E-value=0.18  Score=44.27  Aligned_cols=101  Identities=11%  Similarity=0.001  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhccccc---cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHH
Q psy1678         146 AIVADILSDSIACIG---FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTM  222 (297)
Q Consensus       146 svl~d~l~~~lN~n~---~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~  222 (297)
                      ..+-+.+..++....   ..|....+..++=+.+.+|+.+..|.+-..      ...-++|+|+++++..++.+.-+   
T Consensus        42 ~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p------~~~I~it~G~~~al~~~~~~l~~---  112 (418)
T d2r5ea1          42 KYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINP------MTEVLVTVGAYEALYATIQGHVD---  112 (418)
T ss_dssp             HHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCT------TTSEEEESHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCc------cceEEEcCCCchhhhhhhhhccc---
Confidence            344555555554321   124444445566666889999999876320      12589999999999877766311   


Q ss_pred             HHHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCC
Q psy1678         223 QRVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADD  271 (297)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~  271 (297)
                                      +.-.|++..-..++....+...|..++.|+++.
T Consensus       113 ----------------~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~  145 (418)
T d2r5ea1         113 ----------------EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKP  145 (418)
T ss_dssp             ----------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEECEE
T ss_pred             ----------------cccceeccccccchhhHHHHHcCCeEEEEEecc
Confidence                            122455677788999999999998888887753

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=93.67  E-value=0.051  Score=46.85  Aligned_cols=126  Identities=7%  Similarity=-0.010  Sum_probs=77.1

Q ss_pred             cccccCCCCC-CHHHHHHHHHHHhcccc---ccccc---cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCC
Q psy1678         133 KFHAYFPTAN-SYPAIVADILSDSIACI---GFTWI---ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGT  205 (297)
Q Consensus       133 ~~~g~~~s~~-~~~svl~d~l~~~lN~n---~~~~~---~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsG  205 (297)
                      |-++|-++|. .+..|+..+-..+.|.+   ....+   .++.+..+=.++.+-|+++||.+++.        .-+|++|
T Consensus         3 ~~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~--------~i~~~~g   74 (361)
T d2c0ra1           3 RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGY--------KVLFIQG   74 (361)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSE--------EEEEESS
T ss_pred             CCcccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCC--------EEEEECC
Confidence            4445556554 45677666666665532   22212   26777788788999999999998642        3688888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcch--HHHHHHhcCCceEEeeCCCCCCcCHHHHHHH
Q psy1678         206 ASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSS--VERAGLLGGVTIRGLPADDSYKLRGDALEAA  283 (297)
Q Consensus       206 GT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~S--i~Kaa~~lg~~v~~Vp~d~~~~md~~~L~~~  283 (297)
                      |+.+++.|+..   ....              ..+.++.++ ..+++  +.+.+...|..+..++.+.....+++.+++.
T Consensus        75 s~t~~~ea~~~---~l~~--------------~~~~~l~~~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  136 (361)
T d2c0ra1          75 GASTQFAMIPM---NFLK--------------EGQTANYVM-TGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEI  136 (361)
T ss_dssp             HHHHHHHHHHH---HHCC--------------TTCEEEEEE-CSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGC
T ss_pred             CchHHHHHHHh---cccc--------------CCCceEEEe-echhhhhhhhhhhhcCceeeeeccccccccchhhhhhh
Confidence            88877765443   2111              112233332 22322  2345566788888888888778887777654


Q ss_pred             H
Q psy1678         284 I  284 (297)
Q Consensus       284 i  284 (297)
                      +
T Consensus       137 ~  137 (361)
T d2c0ra1         137 Q  137 (361)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.80  E-value=0.26  Score=41.85  Aligned_cols=94  Identities=15%  Similarity=0.081  Sum_probs=56.5

Q ss_pred             HHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhh
Q psy1678         149 ADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEA  228 (297)
Q Consensus       149 ~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~  228 (297)
                      .+.+...++.....+.-.+...++...+.+|+..- +.+++         .-++|+|+++++...+.+            
T Consensus        38 ~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~-~v~~d---------~I~it~G~~~~l~~l~~~------------   95 (334)
T d2f8ja1          38 VDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTD-FLSKN---------NVSVGNGADEIIYVMMLM------------   95 (334)
T ss_dssp             HHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCS-SCCGG---------GEEEEEHHHHHHHHHHHH------------
T ss_pred             HHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhccc-CCCcc---------eEEecCcchhHHHHHhhh------------
Confidence            44444555544433333334445555555555332 34443         478899988876543221            


Q ss_pred             CCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCCCCCCc
Q psy1678         229 HPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPADDSYKL  275 (297)
Q Consensus       229 ~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d~~~~m  275 (297)
                      +         .  .|++..-+......++.++|.+++.||+++++..
T Consensus        96 ~---------d--~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~  131 (334)
T d2f8ja1          96 F---------D--RSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRI  131 (334)
T ss_dssp             S---------S--EEEECSSCCHHHHHHHHHHTCCEEECCCCTTSCC
T ss_pred             c---------c--ccccccccccccccchhccCCccccccccccccc
Confidence            1         1  2445666788888999999999999988776654

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.21  E-value=0.39  Score=41.21  Aligned_cols=100  Identities=8%  Similarity=-0.063  Sum_probs=64.2

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      +|....+=.++.+.+.++++.....     ....-+||+|||+++-.++...    ...       +     .+.-.+++
T Consensus        31 ~~~f~~~~~~~~~~~r~~~~~~~~~-----~~~~i~~t~sgT~a~~~~~~~l----~~~-------~-----~~gd~vlv   89 (382)
T d2bkwa1          31 SPEFVSIFQRVLKNTRAVFKSAAAS-----KSQPFVLAGSGTLGWDIFASNF----ILS-------K-----APNKNVLV   89 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCGGG-----TCEEEEEESCTTHHHHHHHHHH----SCT-------T-----CSCCEEEE
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhcCC-----CCeEEEEeCcHHHHHHHHHHHH----HHh-------c-----CCCCceEE
Confidence            4556666667889999999863210     0124889999999998877653    110       0     11124556


Q ss_pred             cCCCcchHH--HHHHhcCCceEEeeCCC-CCCcCHHHHHHHHHH
Q psy1678         246 SDQAHSSVE--RAGLLGGVTIRGLPADD-SYKLRGDALEAAIEE  286 (297)
Q Consensus       246 s~~aH~Si~--Kaa~~lg~~v~~Vp~d~-~~~md~~~L~~~i~~  286 (297)
                      ....|++..  ..+...|..++.+...+ ....+.+.+++.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (382)
T d2bkwa1          90 VSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ  133 (382)
T ss_dssp             ECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH
T ss_pred             EEechhhhhhhhhccccccccccccccCCCCccchhHHHHHhhh
Confidence            778888754  34455677777776544 456788888877764

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=91.93  E-value=0.67  Score=39.57  Aligned_cols=109  Identities=12%  Similarity=0.054  Sum_probs=68.6

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +-+.+...++.....|....+..++-+.+.+|+.+..|.+-+.       ..-++|+||+++...++.+-    ..    
T Consensus        46 i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~-------~~i~~t~G~~~al~~~~~~l----~~----  110 (375)
T d1o4sa_          46 VVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISP-------DQVVVTNGAKQALFNAFMAL----LD----  110 (375)
T ss_dssp             HHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCG-------GGEEEESHHHHHHHHHHHHH----CC----
T ss_pred             HHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhcccccccc-------ccccccCcHHHHHHHHHHHH----hC----
Confidence            3444554554433345444456788888999999888876432       26899999999887766653    10    


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEA  282 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~  282 (297)
                                ... .|++.+-..+.....+...|..++.++++  ..+.+|.+.++.
T Consensus       111 ----------~gd-~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (375)
T d1o4sa_         111 ----------PGD-EVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEG  156 (375)
T ss_dssp             ----------TTC-EEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHH
T ss_pred             ----------CCC-EEEEccCccccchhhhhccccccccccccccccccchhHHHHH
Confidence                      012 34455566777777777788777776665  345666655544

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=91.75  E-value=0.034  Score=47.40  Aligned_cols=74  Identities=5%  Similarity=0.020  Sum_probs=48.5

Q ss_pred             cccCCCCC-CHHHHHHHHHHHhccccc---cccc---cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChh
Q psy1678         135 HAYFPTAN-SYPAIVADILSDSIACIG---FTWI---ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTAS  207 (297)
Q Consensus       135 ~g~~~s~~-~~~svl~d~l~~~lN~n~---~~~~---~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT  207 (297)
                      ++|-++|. .++.|+..+-..++|.+.   ...+   .+|-+.++=.++.+.|++++|.++..        .-+||+|++
T Consensus         3 ~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~--------~v~~~~gs~   74 (360)
T d1bjna_           3 FNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNY--------KVLFCHGGG   74 (360)
T ss_dssp             EECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTE--------EEEEESSHH
T ss_pred             EEeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCC--------EEEEECCch
Confidence            45556664 456666655555555432   2222   35666666667999999999997642        478899999


Q ss_pred             HHHHHHHHH
Q psy1678         208 EATLVALLG  216 (297)
Q Consensus       208 ~anl~Al~~  216 (297)
                      ++++.++..
T Consensus        75 t~~~~a~~~   83 (360)
T d1bjna_          75 RGQFAAVPL   83 (360)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHhhhhh
Confidence            888766543

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.41  Score=41.92  Aligned_cols=99  Identities=7%  Similarity=0.014  Sum_probs=59.7

Q ss_pred             HHHHHHHHHhccccc--cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHH
Q psy1678         146 AIVADILSDSIACIG--FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQ  223 (297)
Q Consensus       146 svl~d~l~~~lN~n~--~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~  223 (297)
                      ..+.+.+..++....  ..|....+..++-..+.+|+.+.+|++-+.      ....++|+|++++...++.+.-+    
T Consensus        41 ~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~------~~~I~it~G~~~al~~~~~~l~~----  110 (418)
T d1w7la_          41 DFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDP------LRNVLVTVGGYGALFTAFQALVD----  110 (418)
T ss_dssp             HHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCH------HHHEEEESHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCc------ccceeeccCcHHHHHHHHHhhcc----
Confidence            345566666665432  234444556677777889999998986310      01488999999998887655311    


Q ss_pred             HHHhhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeC
Q psy1678         224 RVKEAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPA  269 (297)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~  269 (297)
                                     +.-.+++..-..+...-.+...|.+++.++.
T Consensus       111 ---------------~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~  141 (418)
T d1w7la_         111 ---------------EGDEVIIIEPFFDCYEPMTMMAGGRPVFVSL  141 (418)
T ss_dssp             ---------------TTCEEEEEESCCTTHHHHHHHTTCEEEEEEC
T ss_pred             ---------------CCceeeccccccchhHHHHHHcCCEeecccc
Confidence                           1123444445555566666666665555543

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.88  E-value=0.39  Score=40.66  Aligned_cols=39  Identities=15%  Similarity=0.124  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHH
Q psy1678         171 ELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLG  216 (297)
Q Consensus       171 ~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~  216 (297)
                      .+-.++.+.+++++|.+++.       .-.+||+|||+++-.++..
T Consensus        33 ~~~~~~r~~l~~l~~~~~~~-------~~i~~t~s~T~~~~~~~~~   71 (361)
T d1m32a_          33 GVVEQIRQQLTALATASEGY-------TSVLLQGSGSYAVEAVLGS   71 (361)
T ss_dssp             TTHHHHHHHHHHHHCSSSSE-------EEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCC-------EEEEECCCHHHHHHHHHHH
Confidence            34446999999999998642       1378899999998776654

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=88.40  E-value=0.8  Score=39.86  Aligned_cols=43  Identities=23%  Similarity=0.089  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHH
Q psy1678         170 TELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKT  221 (297)
Q Consensus       170 ~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~  221 (297)
                      +..+.+....+.........         --.||++|||||-.|++.||.+.
T Consensus        78 ~~~~~~la~~l~~~~~~~~~---------~v~f~~sGseA~e~Aik~Ar~~t  120 (387)
T d1vefa1          78 TPMRGEFYRTLTAILPPELN---------RVFPVNSGTEANEAALKFARAHT  120 (387)
T ss_dssp             CHHHHHHHHHHHHTSCTTEE---------EEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhccccce---------eeccccCchHHHHHHHHHHHhhc
Confidence            44555555666666544432         36889999999999999999863

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=87.79  E-value=6.8  Score=33.05  Aligned_cols=113  Identities=12%  Similarity=0.005  Sum_probs=60.1

Q ss_pred             HHHHHHHhccccc-cccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHH
Q psy1678         148 VADILSDSIACIG-FTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVK  226 (297)
Q Consensus       148 l~d~l~~~lN~n~-~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~  226 (297)
                      +.+.+..+.+.+. ..|....+..++=+.+.+|+.+.-+....        ...++|+||+.+...++.....   .   
T Consensus        49 V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~---~---  114 (394)
T d2ay1a_          49 VHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSET--------TATLATVGGTGALRQALELARM---A---  114 (394)
T ss_dssp             HHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGG--------EEEEEEEHHHHHHHHHHHHHHH---H---
T ss_pred             HHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhcccccccc--------ccceeccCchHHHHHHHHHhhh---c---
Confidence            4555555544332 23544445555666677776654433221        2467788887776555543211   1   


Q ss_pred             hhCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC--CCCCcCHHHHHHHHH
Q psy1678         227 EAHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD--DSYKLRGDALEAAIE  285 (297)
Q Consensus       227 ~~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d--~~~~md~~~L~~~i~  285 (297)
                        +         +.-.|+++.-.-+...-.++..|.+++.+|++  ..+..+.+.+.+.+.
T Consensus       115 --~---------~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~  164 (394)
T d2ay1a_         115 --N---------PDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLA  164 (394)
T ss_dssp             --C---------TTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHH
T ss_pred             --C---------CceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHHHHh
Confidence              1         11235556555555666677777777777763  344555555544443

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=87.34  E-value=0.64  Score=39.18  Aligned_cols=75  Identities=8%  Similarity=0.074  Sum_probs=47.6

Q ss_pred             ccccCCCCC-CHHHHHHHHHHHhccccc---cccc---cCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCCh
Q psy1678         134 FHAYFPTAN-SYPAIVADILSDSIACIG---FTWI---ASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTA  206 (297)
Q Consensus       134 ~~g~~~s~~-~~~svl~d~l~~~lN~n~---~~~~---~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGG  206 (297)
                      .|+|-++|. .+..|+..+-...+|-+.   ...+   .+|.+..+=.++.+-+++++|.|++.        ..+|++|+
T Consensus         4 ~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~--------~i~~~~gt   75 (360)
T d1w23a_           4 VFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDY--------QILFLQGG   75 (360)
T ss_dssp             CEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTE--------EEEEESSH
T ss_pred             eeEeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCC--------EEEEeCCc
Confidence            345555553 456666555555554321   1111   36777778778999999999998652        37788888


Q ss_pred             hHHHHHHHHH
Q psy1678         207 SEATLVALLG  216 (297)
Q Consensus       207 T~anl~Al~~  216 (297)
                      +.++..+...
T Consensus        76 ~~~~~~~~~~   85 (360)
T d1w23a_          76 ASLQFTMLPM   85 (360)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777654443

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=85.24  E-value=0.53  Score=41.66  Aligned_cols=96  Identities=14%  Similarity=0.075  Sum_probs=65.7

Q ss_pred             CchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEe
Q psy1678         166 SPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYC  245 (297)
Q Consensus       166 ~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~  245 (297)
                      +-..-++|..+++...++||....          -+-..+||.||+.++.+-    +..    |        ..=+.+=.
T Consensus        67 ~~~iD~iE~la~~ra~~lF~a~~a----------nVqp~SGs~AN~av~~Al----l~p----G--------D~Il~l~l  120 (416)
T d1dfoa_          67 CEYVDIVEQLAIDRAKELFGADYA----------NVQPHSGSQANFAVYTAL----LEP----G--------DTVLGMNL  120 (416)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCSEE----------ECCCSSHHHHHHHHHHHH----CCT----T--------CEEEEECT
T ss_pred             ChhHHHHHHHHHHHHHHHhCCCcc----------eeecccCccHHHHHHHHh----cCC----C--------Ceeeeccc
Confidence            345678999999999999998542          344567999998877753    110    1        01112224


Q ss_pred             cCCCcchHHHHHHhcCC--ceEEeeCCCCCCcCHHHHHHHHHHH
Q psy1678         246 SDQAHSSVERAGLLGGV--TIRGLPADDSYKLRGDALEAAIEED  287 (297)
Q Consensus       246 s~~aH~Si~Kaa~~lg~--~v~~Vp~d~~~~md~~~L~~~i~~~  287 (297)
                      +.-.|.|--..+...|.  +.+..++|+++.+|.++|++..++-
T Consensus       121 ~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~  164 (416)
T d1dfoa_         121 AHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEH  164 (416)
T ss_dssp             TTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHH
T ss_pred             cccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHh
Confidence            56677776555544443  6777788999999999999998764

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=84.19  E-value=1.4  Score=37.05  Aligned_cols=66  Identities=14%  Similarity=0.087  Sum_probs=40.9

Q ss_pred             HHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHhhCCCCCCcCCCCceEEEecCCCcchHH
Q psy1678         175 VMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKEAHPDWKDSDIIANLVGYCSDQAHSSVE  254 (297)
Q Consensus       175 ~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~aH~Si~  254 (297)
                      +..+++|+.+|.++.         .-++|+|++++++..+.+.     .              .+..+|.++  .+....
T Consensus        61 ~Lr~aia~~~~v~~~---------~I~~~~g~~~~~~~~~~~~-----~--------------~~~~~v~~p--~~~~~~  110 (355)
T d1lc5a_          61 HLHQALARHHQVPAS---------WILAGNGETESIFTVASGL-----K--------------PRRAMIVTP--GFAEYG  110 (355)
T ss_dssp             HHHHHHHHHHTSCGG---------GEEEESSHHHHHHHHHHHH-----C--------------CSEEEEEES--CCTHHH
T ss_pred             HHHHHHHHHhCCCHH---------HEEecccHHHHHHHHHhhh-----c--------------cccccccCC--ccceec
Confidence            356677888899875         4777888887766544321     0              123344433  344455


Q ss_pred             HHHHhcCCceEEeeCC
Q psy1678         255 RAGLLGGVTIRGLPAD  270 (297)
Q Consensus       255 Kaa~~lg~~v~~Vp~d  270 (297)
                      ......+.+++.||++
T Consensus       111 ~~~~~~~~~~~~v~~~  126 (355)
T d1lc5a_         111 RALAQSGCEIRRWSLR  126 (355)
T ss_dssp             HHHHHTTCEEEEEECC
T ss_pred             cccccccccceeeeee
Confidence            6667778888888876

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=82.86  E-value=1.5  Score=37.37  Aligned_cols=118  Identities=10%  Similarity=0.035  Sum_probs=70.4

Q ss_pred             HHHHHHHhccccccccccCchhhHHHHHHHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHHHHHHh
Q psy1678         148 VADILSDSIACIGFTWIASPACTELEVVMLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTMQRVKE  227 (297)
Q Consensus       148 l~d~l~~~lN~n~~~~~~~p~~~~iE~~v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~~~~~~  227 (297)
                      +-+.+....+ ....|....+..++=+.+.+|+.+..|.+-+.       -.-++|+|++++...++.+-.+        
T Consensus        46 ~~~al~~~~~-~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~-------~~I~it~G~~~~l~~~~~~l~~--------  109 (389)
T d2gb3a1          46 FFERIYENKP-EVVYYSHSAGIWELREAFASYYKRRQRVDVKP-------ENVLVTNGGSEAILFSFAVIAN--------  109 (389)
T ss_dssp             HHHHHHHTCC-SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCG-------GGEEEESHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHhcCC-CCCCCCCCcCCHHHHHHHHHHHHHhcCCCccc-------ceEEeccccccccccccccccc--------
Confidence            3444544332 23345444445666677889999888875221       2588999999987776655311        


Q ss_pred             hCCCCCCcCCCCceEEEecCCCcchHHHHHHhcCCceEEeeCC-----------------------------CCC-CcCH
Q psy1678         228 AHPDWKDSDIIANLVGYCSDQAHSSVERAGLLGGVTIRGLPAD-----------------------------DSY-KLRG  277 (297)
Q Consensus       228 ~~~~~~~~~~~~~~~i~~s~~aH~Si~Kaa~~lg~~v~~Vp~d-----------------------------~~~-~md~  277 (297)
                                 +.-.|++..-..+.....+...|..++.++++                             +.| .++.
T Consensus       110 -----------~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~  178 (389)
T d2gb3a1         110 -----------PGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGK  178 (389)
T ss_dssp             -----------TTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCH
T ss_pred             -----------CCCeEEEeCCCCccccccccccCccccccccccccccchhhhhhhhcccCccEEEeCCCCccccccchH
Confidence                       11134455567777777777777655544443                             333 3566


Q ss_pred             HHHHHHHHHHHHCCC
Q psy1678         278 DALEAAIEEDLKKGK  292 (297)
Q Consensus       278 ~~L~~~i~~~~~~G~  292 (297)
                      +.+++.++-+.+.+.
T Consensus       179 ~~~~~i~~~a~~~~~  193 (389)
T d2gb3a1         179 DEMRYLVEIAERHGL  193 (389)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhcccCCE
Confidence            666766666666663

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.28  E-value=4.9  Score=34.69  Aligned_cols=36  Identities=19%  Similarity=0.109  Sum_probs=28.1

Q ss_pred             HHHHHHHHcCCCccccccCCCCCCeEEcCChhHHHHHHHHHHHHHHH
Q psy1678         176 MLDWLGKMLDLPKEFLACSGGKGGGVIQGTASEATLVALLGAKAKTM  222 (297)
Q Consensus       176 v~~~l~~llg~~~~~~~~~~~~~~G~~tsGGT~anl~Al~~AR~~~~  222 (297)
                      ..+.++++.++..           -.|+..|||||-.|++.||.+..
T Consensus        88 ~~~~~~~~~~~~~-----------v~~~~sGseA~e~Aik~ar~~~~  123 (404)
T d2byla1          88 YEEYITKLFNYHK-----------VLPMNTGVEAGETACKLARKWGY  123 (404)
T ss_dssp             HHHHHHHHHTCSE-----------EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhcccccc-----------cccccCccccchhHHHHHHHHhh
Confidence            3346677777753           67899999999999999998743